Query 042374
Match_columns 714
No_of_seqs 430 out of 4624
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 05:37:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042374.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042374hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 3.1E-82 6.6E-87 742.6 62.3 684 1-706 96-910 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 2.1E-60 4.5E-65 527.6 25.0 432 60-504 161-625 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 5.1E-38 1.1E-42 317.3 13.3 254 62-320 1-268 (287)
4 PLN00113 leucine-rich repeat r 100.0 1.6E-28 3.5E-33 290.0 22.2 329 384-712 141-498 (968)
5 PLN00113 leucine-rich repeat r 100.0 4.8E-28 1E-32 286.0 22.6 327 384-711 165-521 (968)
6 KOG4194 Membrane glycoprotein 99.9 1.1E-27 2.4E-32 239.2 4.1 353 331-709 83-464 (873)
7 KOG4194 Membrane glycoprotein 99.9 7.1E-27 1.5E-31 233.4 7.5 336 353-712 81-439 (873)
8 KOG0444 Cytoskeletal regulator 99.9 1.6E-25 3.4E-30 225.3 -3.1 335 324-686 32-380 (1255)
9 KOG0444 Cytoskeletal regulator 99.9 1.3E-25 2.8E-30 225.9 -3.9 334 343-706 25-379 (1255)
10 KOG0472 Leucine-rich repeat pr 99.9 6.3E-25 1.4E-29 210.2 -8.8 251 343-609 61-317 (565)
11 PLN03210 Resistant to P. syrin 99.9 2.2E-20 4.7E-25 220.8 24.0 307 346-685 584-910 (1153)
12 KOG0472 Leucine-rich repeat pr 99.9 3.2E-24 7E-29 205.3 -7.9 217 343-574 84-306 (565)
13 KOG0618 Serine/threonine phosp 99.8 3.7E-22 8E-27 210.7 -3.2 345 343-702 38-489 (1081)
14 PRK15387 E3 ubiquitin-protein 99.8 6E-19 1.3E-23 193.0 15.1 240 384-686 223-463 (788)
15 PRK15387 E3 ubiquitin-protein 99.7 4.7E-17 1E-21 178.2 15.4 261 405-709 201-465 (788)
16 PRK15370 E3 ubiquitin-protein 99.7 5.4E-17 1.2E-21 179.1 12.6 204 385-606 180-384 (754)
17 KOG0618 Serine/threonine phosp 99.7 1.1E-18 2.4E-23 184.8 -3.2 261 384-680 220-488 (1081)
18 PRK15370 E3 ubiquitin-protein 99.7 3.6E-16 7.9E-21 172.6 12.2 244 405-681 178-428 (754)
19 KOG0617 Ras suppressor protein 99.6 3.3E-17 7.2E-22 139.1 -5.4 167 396-607 24-191 (264)
20 KOG0617 Ras suppressor protein 99.5 2.9E-16 6.4E-21 133.4 -2.1 172 422-655 28-200 (264)
21 KOG4237 Extracellular matrix p 99.5 9.1E-16 2E-20 147.7 -1.3 85 583-680 268-358 (498)
22 cd00116 LRR_RI Leucine-rich re 99.5 1E-14 2.2E-19 150.2 0.4 248 426-700 22-318 (319)
23 KOG4237 Extracellular matrix p 99.4 3.4E-15 7.4E-20 143.8 -3.6 281 388-701 51-358 (498)
24 cd00116 LRR_RI Leucine-rich re 99.4 3.6E-14 7.8E-19 146.1 1.0 242 432-700 3-289 (319)
25 PRK00411 cdc6 cell division co 99.3 1.6E-10 3.4E-15 122.3 22.3 243 55-312 28-307 (394)
26 PF01637 Arch_ATPase: Archaeal 99.3 1.7E-11 3.7E-16 119.9 13.1 193 59-260 1-233 (234)
27 TIGR03015 pepcterm_ATPase puta 99.2 1.1E-09 2.5E-14 109.2 22.3 179 80-265 43-242 (269)
28 TIGR02928 orc1/cdc6 family rep 99.2 2.2E-09 4.7E-14 112.4 24.9 247 55-312 13-299 (365)
29 PF05729 NACHT: NACHT domain 99.1 4.9E-10 1.1E-14 103.0 12.7 143 81-230 1-163 (166)
30 KOG4658 Apoptotic ATPase [Sign 99.1 5.4E-11 1.2E-15 134.1 6.2 194 384-579 524-731 (889)
31 KOG0532 Leucine-rich repeat (L 99.1 7.3E-12 1.6E-16 126.7 -3.3 172 410-607 55-229 (722)
32 PRK04841 transcriptional regul 99.1 6.4E-09 1.4E-13 123.0 20.1 242 55-314 12-278 (903)
33 KOG3207 Beta-tubulin folding c 99.0 7.4E-11 1.6E-15 115.9 -0.4 131 539-681 195-339 (505)
34 PF14580 LRR_9: Leucine-rich r 99.0 2.8E-10 6.2E-15 102.4 3.2 33 643-675 111-147 (175)
35 COG3899 Predicted ATPase [Gene 99.0 1.2E-08 2.6E-13 115.9 16.5 260 58-320 1-327 (849)
36 PRK06893 DNA replication initi 99.0 1.2E-08 2.7E-13 98.1 14.1 151 80-261 39-203 (229)
37 PTZ00112 origin recognition co 98.9 3.6E-08 7.8E-13 106.6 18.5 172 55-232 753-951 (1164)
38 PF14580 LRR_9: Leucine-rich r 98.9 1.1E-09 2.3E-14 98.7 4.6 126 538-700 16-151 (175)
39 PRK00080 ruvB Holliday junctio 98.9 1.1E-08 2.5E-13 104.5 12.8 223 55-315 23-274 (328)
40 KOG1259 Nischarin, modulator o 98.9 3.6E-10 7.8E-15 105.5 1.1 127 517-661 283-415 (490)
41 TIGR00635 ruvB Holliday juncti 98.9 1E-08 2.2E-13 104.3 11.4 189 57-263 4-203 (305)
42 COG4886 Leucine-rich repeat (L 98.9 3.5E-09 7.6E-14 112.2 8.3 142 524-682 146-291 (394)
43 KOG1909 Ran GTPase-activating 98.9 1.3E-10 2.8E-15 111.2 -2.5 230 426-680 29-310 (382)
44 COG2256 MGS1 ATPase related to 98.9 3E-08 6.5E-13 97.5 12.9 150 78-255 46-206 (436)
45 KOG0532 Leucine-rich repeat (L 98.8 2.8E-10 6.2E-15 115.5 -2.3 162 519-699 99-270 (722)
46 PRK13342 recombination factor 98.8 4.9E-08 1.1E-12 102.9 14.3 174 56-260 11-195 (413)
47 KOG3207 Beta-tubulin folding c 98.8 1.2E-09 2.6E-14 107.6 0.9 172 515-699 143-336 (505)
48 KOG1259 Nischarin, modulator o 98.8 1.2E-09 2.6E-14 102.1 0.8 127 538-681 281-412 (490)
49 PF05496 RuvB_N: Holliday junc 98.8 4.8E-08 1E-12 89.7 10.6 181 54-266 21-226 (233)
50 COG1474 CDC6 Cdc6-related prot 98.7 7.5E-07 1.6E-11 91.0 19.3 192 55-253 15-229 (366)
51 COG4886 Leucine-rich repeat (L 98.7 1.2E-08 2.6E-13 108.0 5.7 39 622-660 251-292 (394)
52 PRK14956 DNA polymerase III su 98.7 1.7E-07 3.6E-12 97.3 13.5 195 55-257 16-218 (484)
53 PRK14961 DNA polymerase III su 98.7 1.2E-06 2.6E-11 90.6 20.0 196 55-258 14-217 (363)
54 TIGR03420 DnaA_homol_Hda DnaA 98.7 3.7E-07 8E-12 88.5 15.0 168 62-263 22-203 (226)
55 PRK14963 DNA polymerase III su 98.7 2.3E-07 5E-12 99.0 14.1 192 56-258 13-214 (504)
56 PRK07003 DNA polymerase III su 98.7 1.8E-06 4E-11 93.4 20.5 193 56-256 15-215 (830)
57 PF13173 AAA_14: AAA domain 98.7 1E-07 2.2E-12 82.7 9.2 120 80-222 2-127 (128)
58 PRK14949 DNA polymerase III su 98.7 9.9E-07 2.2E-11 97.3 18.3 194 55-259 14-218 (944)
59 PF13191 AAA_16: AAA ATPase do 98.7 4.8E-08 1E-12 91.5 7.0 50 58-107 1-51 (185)
60 PRK12402 replication factor C 98.6 7E-07 1.5E-11 92.5 16.1 196 57-258 15-223 (337)
61 PRK14960 DNA polymerase III su 98.6 1.4E-06 2.9E-11 93.3 18.1 192 55-258 13-216 (702)
62 PRK08727 hypothetical protein; 98.6 1.1E-06 2.3E-11 84.9 15.8 147 81-258 42-201 (233)
63 KOG1909 Ran GTPase-activating 98.6 2.2E-09 4.8E-14 102.9 -3.4 234 446-701 26-310 (382)
64 PLN03025 replication factor C 98.6 9.4E-07 2E-11 90.0 15.2 180 56-257 12-196 (319)
65 PF00308 Bac_DnaA: Bacterial d 98.6 1.7E-06 3.7E-11 82.3 15.9 178 59-258 11-205 (219)
66 PF13401 AAA_22: AAA domain; P 98.6 2.3E-07 5E-12 81.2 9.0 114 79-199 3-125 (131)
67 PRK12323 DNA polymerase III su 98.6 2E-06 4.3E-11 91.8 16.8 197 56-260 15-224 (700)
68 PRK07940 DNA polymerase III su 98.6 2.4E-06 5.3E-11 88.2 17.1 187 57-261 5-213 (394)
69 PRK05564 DNA polymerase III su 98.5 3E-06 6.5E-11 86.1 16.9 177 57-260 4-189 (313)
70 PRK04195 replication factor C 98.5 1.8E-06 3.9E-11 93.1 16.1 177 56-259 13-200 (482)
71 PRK14957 DNA polymerase III su 98.5 3E-06 6.5E-11 90.6 17.2 195 55-261 14-221 (546)
72 PRK00440 rfc replication facto 98.5 7.2E-06 1.6E-10 84.2 19.5 181 57-258 17-200 (319)
73 cd00009 AAA The AAA+ (ATPases 98.5 9.8E-07 2.1E-11 79.1 11.6 124 60-201 1-131 (151)
74 PRK05896 DNA polymerase III su 98.5 1.3E-06 2.9E-11 93.3 14.1 189 55-256 14-215 (605)
75 PRK14962 DNA polymerase III su 98.5 3.8E-06 8.2E-11 89.0 17.1 201 55-263 12-221 (472)
76 PRK06645 DNA polymerase III su 98.5 5E-06 1.1E-10 88.4 17.6 193 55-258 19-226 (507)
77 PRK07994 DNA polymerase III su 98.5 5.3E-06 1.2E-10 90.2 18.0 193 55-259 14-218 (647)
78 TIGR02397 dnaX_nterm DNA polym 98.5 2.4E-06 5.1E-11 89.2 15.0 195 55-261 12-218 (355)
79 PRK05642 DNA replication initi 98.5 3.7E-06 8.1E-11 81.1 15.1 148 81-259 46-206 (234)
80 PTZ00202 tuzin; Provisional 98.5 1.3E-05 2.8E-10 80.9 18.9 162 55-229 260-433 (550)
81 PRK13341 recombination factor 98.5 2.7E-06 5.9E-11 94.4 15.7 169 55-255 26-211 (725)
82 PRK08691 DNA polymerase III su 98.5 4.5E-06 9.7E-11 90.3 16.3 196 55-258 14-217 (709)
83 PRK15386 type III secretion pr 98.5 5.9E-07 1.3E-11 91.0 9.1 152 519-701 53-212 (426)
84 PRK08084 DNA replication initi 98.5 4.9E-06 1.1E-10 80.4 15.1 148 80-259 45-207 (235)
85 PRK07471 DNA polymerase III su 98.5 2.4E-05 5.1E-10 80.3 20.7 197 55-262 17-239 (365)
86 KOG2028 ATPase related to the 98.4 1.6E-06 3.6E-11 83.8 11.3 176 55-256 136-331 (554)
87 TIGR00678 holB DNA polymerase 98.4 7E-06 1.5E-10 76.7 15.5 90 160-257 95-187 (188)
88 COG2909 MalT ATP-dependent tra 98.4 4.6E-06 1E-10 90.1 15.8 240 55-315 17-285 (894)
89 TIGR01242 26Sp45 26S proteasom 98.4 1.1E-06 2.3E-11 91.4 10.9 174 56-255 121-328 (364)
90 PRK15386 type III secretion pr 98.4 6.5E-07 1.4E-11 90.7 8.8 136 537-700 48-188 (426)
91 PRK14964 DNA polymerase III su 98.4 7.9E-06 1.7E-10 86.1 17.1 190 56-258 12-214 (491)
92 PRK09087 hypothetical protein; 98.4 2.3E-06 5E-11 81.7 12.0 138 80-260 44-194 (226)
93 PRK09112 DNA polymerase III su 98.4 6.5E-06 1.4E-10 83.9 15.7 196 55-262 21-241 (351)
94 PRK14951 DNA polymerase III su 98.4 1.3E-05 2.8E-10 87.0 18.9 193 55-258 14-222 (618)
95 PLN03150 hypothetical protein; 98.4 4.7E-07 1E-11 100.5 7.7 80 521-600 421-501 (623)
96 PRK08903 DnaA regulatory inact 98.4 5.6E-06 1.2E-10 80.0 14.3 168 61-265 23-203 (227)
97 PRK14958 DNA polymerase III su 98.4 8.5E-06 1.8E-10 87.4 16.7 190 55-258 14-217 (509)
98 PRK14087 dnaA chromosomal repl 98.4 8.6E-06 1.9E-10 86.2 15.7 165 80-262 141-320 (450)
99 PRK14969 DNA polymerase III su 98.4 1.1E-05 2.4E-10 87.1 16.5 193 56-256 15-215 (527)
100 KOG0531 Protein phosphatase 1, 98.3 1.1E-07 2.3E-12 100.9 0.3 233 426-701 71-317 (414)
101 PRK14955 DNA polymerase III su 98.3 1.1E-05 2.4E-10 84.5 15.3 196 55-258 14-225 (397)
102 PRK09111 DNA polymerase III su 98.3 2.1E-05 4.6E-10 85.6 17.5 193 55-258 22-230 (598)
103 PRK14952 DNA polymerase III su 98.3 5.8E-05 1.2E-09 81.8 20.6 190 55-256 11-214 (584)
104 PRK14950 DNA polymerase III su 98.3 1E-05 2.2E-10 89.1 14.9 193 55-259 14-219 (585)
105 COG3903 Predicted ATPase [Gene 98.3 6.8E-07 1.5E-11 88.9 5.2 232 79-320 13-258 (414)
106 PLN03150 hypothetical protein; 98.3 9.7E-07 2.1E-11 98.0 6.5 102 542-656 419-526 (623)
107 PRK03992 proteasome-activating 98.3 9.8E-06 2.1E-10 84.5 13.5 174 56-255 130-337 (389)
108 PRK07133 DNA polymerase III su 98.3 2.9E-05 6.4E-10 85.0 17.5 190 56-256 17-214 (725)
109 PF13855 LRR_8: Leucine rich r 98.3 9.8E-07 2.1E-11 65.0 4.4 58 519-576 2-60 (61)
110 PRK07764 DNA polymerase III su 98.3 7.2E-05 1.6E-09 84.5 21.0 189 56-256 14-216 (824)
111 PRK14970 DNA polymerase III su 98.3 3.4E-05 7.3E-10 80.6 17.0 179 55-256 15-204 (367)
112 TIGR03345 VI_ClpV1 type VI sec 98.3 3.1E-05 6.7E-10 88.5 17.8 195 39-255 169-390 (852)
113 PRK14959 DNA polymerase III su 98.3 0.00011 2.4E-09 79.4 20.9 193 56-263 15-223 (624)
114 TIGR02639 ClpA ATP-dependent C 98.3 1.3E-05 2.9E-10 90.8 14.8 170 39-230 164-358 (731)
115 PRK14953 DNA polymerase III su 98.2 7.2E-05 1.6E-09 79.8 19.1 197 55-259 14-218 (486)
116 TIGR02881 spore_V_K stage V sp 98.2 2.2E-05 4.7E-10 77.5 14.1 153 59-232 8-193 (261)
117 KOG2227 Pre-initiation complex 98.2 3.3E-05 7.3E-10 77.9 15.0 174 54-231 147-339 (529)
118 PRK14954 DNA polymerase III su 98.2 4.6E-05 1E-09 83.1 17.5 194 55-256 14-223 (620)
119 PRK06305 DNA polymerase III su 98.2 8E-05 1.7E-09 79.0 18.9 186 55-256 15-217 (451)
120 TIGR00362 DnaA chromosomal rep 98.2 4.4E-05 9.6E-10 80.7 17.1 179 80-280 136-337 (405)
121 PHA02544 44 clamp loader, smal 98.2 9.1E-05 2E-09 75.8 18.9 148 56-228 20-171 (316)
122 PRK00149 dnaA chromosomal repl 98.2 2.5E-05 5.4E-10 83.7 15.3 199 59-280 125-349 (450)
123 KOG2982 Uncharacterized conser 98.2 6.8E-07 1.5E-11 84.1 2.4 46 641-686 220-267 (418)
124 PRK14088 dnaA chromosomal repl 98.2 3.6E-05 7.8E-10 81.5 15.3 158 80-258 130-302 (440)
125 PF13855 LRR_8: Leucine rich r 98.2 1.1E-06 2.3E-11 64.8 2.7 41 566-606 2-42 (61)
126 KOG1859 Leucine-rich repeat pr 98.2 2.3E-08 5E-13 104.6 -8.5 19 467-485 102-120 (1096)
127 PRK08451 DNA polymerase III su 98.2 5.7E-05 1.2E-09 80.6 16.6 190 55-259 12-216 (535)
128 KOG0989 Replication factor C, 98.2 2E-05 4.2E-10 75.1 11.6 180 54-255 33-224 (346)
129 PRK09376 rho transcription ter 98.2 3.8E-06 8.2E-11 84.3 7.3 93 78-172 167-267 (416)
130 CHL00095 clpC Clp protease ATP 98.2 2.6E-05 5.6E-10 89.6 14.9 169 39-229 161-353 (821)
131 KOG0531 Protein phosphatase 1, 98.2 4.1E-07 8.8E-12 96.5 0.1 236 405-682 72-319 (414)
132 TIGR02903 spore_lon_C ATP-depe 98.2 4E-05 8.6E-10 84.6 15.5 203 55-264 152-398 (615)
133 cd01128 rho_factor Transcripti 98.2 2.7E-06 5.8E-11 82.0 5.6 93 79-173 15-115 (249)
134 PRK05563 DNA polymerase III su 98.1 0.00018 3.8E-09 78.5 19.8 190 55-257 14-216 (559)
135 COG2255 RuvB Holliday junction 98.1 4.6E-05 9.9E-10 71.9 12.7 180 55-266 24-228 (332)
136 PRK14948 DNA polymerase III su 98.1 0.00017 3.8E-09 79.2 19.2 193 55-259 14-220 (620)
137 TIGR03689 pup_AAA proteasome A 98.1 2.7E-05 5.9E-10 82.5 11.8 159 57-230 182-378 (512)
138 PRK10865 protein disaggregatio 98.1 5.6E-05 1.2E-09 86.7 15.2 66 39-106 160-225 (857)
139 KOG2120 SCF ubiquitin ligase, 98.1 1.9E-07 4.1E-12 87.7 -3.9 171 518-702 185-376 (419)
140 TIGR02880 cbbX_cfxQ probable R 98.1 9.3E-05 2E-09 73.6 14.6 153 58-231 23-209 (284)
141 COG1222 RPT1 ATP-dependent 26S 98.1 7.5E-05 1.6E-09 72.9 13.2 174 56-256 150-358 (406)
142 PRK06647 DNA polymerase III su 98.1 0.00029 6.2E-09 76.6 19.3 192 55-258 14-217 (563)
143 PRK12422 chromosomal replicati 98.1 7.8E-05 1.7E-09 78.7 14.6 152 80-254 141-306 (445)
144 CHL00181 cbbX CbbX; Provisiona 98.1 0.0004 8.8E-09 69.0 18.9 154 58-232 24-211 (287)
145 PRK14971 DNA polymerase III su 98.0 0.00018 3.8E-09 79.2 17.6 195 56-257 16-218 (614)
146 PRK14086 dnaA chromosomal repl 98.0 0.00013 2.8E-09 78.5 16.0 154 81-256 315-483 (617)
147 PRK11034 clpA ATP-dependent Cl 98.0 4.7E-05 1E-09 85.2 13.3 171 39-230 168-362 (758)
148 TIGR03346 chaperone_ClpB ATP-d 98.0 6.2E-05 1.4E-09 86.8 14.7 170 39-230 155-349 (852)
149 PF14516 AAA_35: AAA-like doma 98.0 0.00032 7E-09 71.5 18.4 205 55-268 9-246 (331)
150 PTZ00454 26S protease regulato 98.0 4.7E-05 1E-09 79.0 12.2 175 56-256 144-352 (398)
151 PRK14965 DNA polymerase III su 98.0 0.00013 2.8E-09 79.9 16.3 189 55-255 14-214 (576)
152 PRK06620 hypothetical protein; 98.0 9.9E-05 2.1E-09 69.9 13.4 132 81-257 45-185 (214)
153 PRK05707 DNA polymerase III su 98.0 0.0002 4.4E-09 72.4 16.3 167 80-261 22-203 (328)
154 PRK07399 DNA polymerase III su 98.0 0.00028 6.1E-09 71.0 17.1 193 57-261 4-221 (314)
155 TIGR00767 rho transcription te 98.0 1.7E-05 3.6E-10 80.2 8.1 94 78-173 166-267 (415)
156 PF05673 DUF815: Protein of un 98.0 0.00058 1.2E-08 64.2 17.4 53 55-107 25-79 (249)
157 KOG2120 SCF ubiquitin ligase, 98.0 1.4E-07 3.1E-12 88.5 -6.8 173 406-598 186-372 (419)
158 KOG2543 Origin recognition com 97.9 0.00036 7.9E-09 68.7 15.7 165 56-229 5-192 (438)
159 PTZ00361 26 proteosome regulat 97.9 3.4E-05 7.5E-10 80.5 9.2 152 57-231 183-368 (438)
160 COG3267 ExeA Type II secretory 97.9 0.0003 6.5E-09 65.7 14.0 182 78-264 49-248 (269)
161 KOG4341 F-box protein containi 97.9 3E-07 6.4E-12 90.6 -6.0 264 406-680 139-438 (483)
162 KOG4341 F-box protein containi 97.9 4.2E-07 9.1E-12 89.6 -5.1 266 427-704 138-441 (483)
163 KOG1859 Leucine-rich repeat pr 97.9 1.5E-06 3.2E-11 91.6 -1.6 105 581-701 179-291 (1096)
164 PF00004 AAA: ATPase family as 97.9 3.5E-05 7.6E-10 67.4 7.3 23 83-105 1-23 (132)
165 CHL00176 ftsH cell division pr 97.9 0.0001 2.3E-09 81.0 12.3 174 56-255 182-388 (638)
166 PLN03194 putative disease resi 97.8 2.6E-05 5.7E-10 69.4 5.5 44 2-55 108-152 (187)
167 PF12799 LRR_4: Leucine Rich r 97.8 1.7E-05 3.8E-10 53.2 3.1 41 645-686 1-41 (44)
168 COG0593 DnaA ATPase involved i 97.8 0.00065 1.4E-08 69.5 15.8 133 79-232 112-259 (408)
169 PRK08116 hypothetical protein; 97.8 0.00013 2.9E-09 71.7 10.1 103 81-200 115-221 (268)
170 TIGR01241 FtsH_fam ATP-depende 97.8 0.00014 3E-09 78.9 11.3 173 57-255 55-260 (495)
171 COG1373 Predicted ATPase (AAA+ 97.8 0.00036 7.8E-09 72.8 13.8 118 82-225 39-162 (398)
172 CHL00195 ycf46 Ycf46; Provisio 97.7 0.00029 6.3E-09 74.9 12.4 176 57-256 228-430 (489)
173 PRK08181 transposase; Validate 97.7 0.00018 3.9E-09 70.3 9.8 36 80-115 106-141 (269)
174 PF05621 TniB: Bacterial TniB 97.7 0.001 2.2E-08 64.7 14.7 196 56-257 33-257 (302)
175 smart00382 AAA ATPases associa 97.7 0.00014 3.1E-09 64.4 8.4 35 81-115 3-37 (148)
176 PRK08769 DNA polymerase III su 97.7 0.0018 3.9E-08 64.9 16.7 95 160-262 112-209 (319)
177 TIGR02639 ClpA ATP-dependent C 97.7 0.00051 1.1E-08 78.1 14.3 116 56-184 453-577 (731)
178 PRK08058 DNA polymerase III su 97.7 0.0017 3.7E-08 66.2 16.6 158 59-229 7-181 (329)
179 PRK06090 DNA polymerase III su 97.7 0.0043 9.2E-08 62.2 18.9 176 66-262 12-202 (319)
180 COG0542 clpA ATP-binding subun 97.7 0.00076 1.6E-08 74.2 14.6 171 40-230 153-346 (786)
181 COG0542 clpA ATP-binding subun 97.7 0.00015 3.2E-09 79.6 9.2 122 55-186 489-619 (786)
182 PLN00020 ribulose bisphosphate 97.7 0.0015 3.1E-08 65.3 15.1 30 78-107 146-175 (413)
183 PRK10536 hypothetical protein; 97.7 0.00011 2.3E-09 70.0 6.9 138 56-200 54-213 (262)
184 PRK12377 putative replication 97.7 0.00024 5.2E-09 68.5 9.4 36 80-115 101-136 (248)
185 COG2812 DnaX DNA polymerase II 97.7 0.00028 6.1E-09 74.3 10.6 193 55-255 14-214 (515)
186 KOG0991 Replication factor C, 97.6 0.00081 1.8E-08 61.5 11.8 47 57-105 27-73 (333)
187 PRK06871 DNA polymerase III su 97.6 0.0036 7.7E-08 62.9 17.8 177 66-259 11-201 (325)
188 COG0466 Lon ATP-dependent Lon 97.6 0.0002 4.4E-09 76.4 9.0 162 55-230 321-508 (782)
189 PRK11331 5-methylcytosine-spec 97.6 0.00025 5.4E-09 73.2 9.3 102 57-173 175-284 (459)
190 PRK07993 DNA polymerase III su 97.6 0.0025 5.5E-08 64.7 16.1 177 66-261 11-204 (334)
191 KOG2228 Origin recognition com 97.6 0.00078 1.7E-08 65.3 11.4 175 55-230 22-219 (408)
192 TIGR00602 rad24 checkpoint pro 97.6 0.00079 1.7E-08 73.6 12.9 51 55-105 82-135 (637)
193 KOG0733 Nuclear AAA ATPase (VC 97.6 0.001 2.2E-08 69.5 12.8 153 56-231 189-375 (802)
194 TIGR01243 CDC48 AAA family ATP 97.5 0.00082 1.8E-08 76.7 13.4 173 57-255 453-657 (733)
195 PF01695 IstB_IS21: IstB-like 97.5 0.00013 2.7E-09 66.9 5.5 36 80-115 47-82 (178)
196 PF13177 DNA_pol3_delta2: DNA 97.5 0.0014 3.1E-08 59.1 12.0 134 61-218 1-162 (162)
197 KOG1514 Origin recognition com 97.5 0.0033 7.2E-08 67.2 16.0 170 55-233 394-592 (767)
198 PRK09183 transposase/IS protei 97.5 0.00036 7.8E-09 68.3 8.6 35 80-114 102-136 (259)
199 PF04665 Pox_A32: Poxvirus A32 97.5 0.00028 6.1E-09 66.9 7.5 34 82-115 15-48 (241)
200 PRK06921 hypothetical protein; 97.5 0.00021 4.5E-09 70.2 6.7 37 79-115 116-153 (266)
201 COG1223 Predicted ATPase (AAA+ 97.5 0.0016 3.5E-08 60.7 11.8 174 55-254 119-318 (368)
202 PRK07952 DNA replication prote 97.5 0.00068 1.5E-08 65.2 10.0 36 80-115 99-134 (244)
203 KOG3665 ZYG-1-like serine/thre 97.5 5.3E-05 1.1E-09 84.1 2.7 35 562-598 170-204 (699)
204 PRK06526 transposase; Provisio 97.5 0.00027 5.8E-09 68.7 6.9 35 80-114 98-132 (254)
205 TIGR01243 CDC48 AAA family ATP 97.5 0.0011 2.4E-08 75.7 12.9 174 57-256 178-382 (733)
206 TIGR03346 chaperone_ClpB ATP-d 97.5 0.0019 4.1E-08 74.8 14.8 134 56-199 564-717 (852)
207 COG5238 RNA1 Ran GTPase-activa 97.4 1.7E-05 3.7E-10 73.9 -1.5 138 535-681 86-255 (388)
208 COG5238 RNA1 Ran GTPase-activa 97.4 1E-05 2.2E-10 75.4 -3.0 231 426-681 29-316 (388)
209 PRK13531 regulatory ATPase Rav 97.4 0.0014 3.1E-08 68.4 12.1 45 57-105 20-64 (498)
210 TIGR02640 gas_vesic_GvpN gas v 97.4 0.0026 5.7E-08 62.6 13.5 25 81-105 22-46 (262)
211 PF07693 KAP_NTPase: KAP famil 97.4 0.0094 2E-07 61.3 18.3 74 63-136 2-79 (325)
212 KOG2982 Uncharacterized conser 97.4 5.8E-05 1.3E-09 71.4 1.7 175 519-705 72-265 (418)
213 PRK10865 protein disaggregatio 97.4 0.0028 6E-08 73.1 15.1 119 56-184 567-694 (857)
214 PRK08118 topology modulation p 97.4 0.00012 2.6E-09 66.5 3.2 34 81-114 2-38 (167)
215 PRK06964 DNA polymerase III su 97.4 0.02 4.4E-07 58.1 19.3 93 160-262 131-226 (342)
216 PRK11034 clpA ATP-dependent Cl 97.4 0.003 6.4E-08 71.1 14.4 115 56-183 457-580 (758)
217 TIGR03345 VI_ClpV1 type VI sec 97.3 0.0012 2.7E-08 75.7 11.1 133 56-198 565-717 (852)
218 PRK09361 radB DNA repair and r 97.3 0.00099 2.1E-08 64.3 9.0 48 68-115 11-58 (225)
219 PRK08939 primosomal protein Dn 97.3 0.0015 3.2E-08 65.5 10.2 119 61-199 135-260 (306)
220 KOG1644 U2-associated snRNP A' 97.3 0.00022 4.9E-09 63.8 3.7 60 542-603 43-102 (233)
221 CHL00095 clpC Clp protease ATP 97.3 0.0011 2.4E-08 76.4 10.1 135 56-200 508-662 (821)
222 PRK06835 DNA replication prote 97.2 0.0014 3.1E-08 66.1 9.5 35 81-115 184-218 (329)
223 PF12799 LRR_4: Leucine Rich r 97.2 0.00023 4.9E-09 47.8 2.5 35 519-553 2-36 (44)
224 KOG1644 U2-associated snRNP A' 97.2 0.00041 8.9E-09 62.2 4.8 98 566-678 43-150 (233)
225 TIGR02902 spore_lonB ATP-depen 97.2 0.0043 9.4E-08 67.5 13.8 48 55-104 63-110 (531)
226 PRK08699 DNA polymerase III su 97.2 0.0086 1.9E-07 60.6 15.0 89 160-258 112-203 (325)
227 KOG2035 Replication factor C, 97.2 0.012 2.6E-07 55.6 14.6 226 58-299 14-282 (351)
228 COG0470 HolB ATPase involved i 97.2 0.0026 5.6E-08 65.5 11.7 142 58-219 2-170 (325)
229 COG1484 DnaC DNA replication p 97.2 0.0015 3.3E-08 63.5 9.2 75 79-172 104-178 (254)
230 KOG0744 AAA+-type ATPase [Post 97.2 0.0016 3.5E-08 62.7 8.9 77 80-171 177-260 (423)
231 KOG0735 AAA+-type ATPase [Post 97.2 0.0048 1E-07 65.9 13.1 155 80-255 431-609 (952)
232 PRK12608 transcription termina 97.2 0.0018 3.8E-08 65.5 9.7 101 68-172 122-231 (380)
233 PRK10787 DNA-binding ATP-depen 97.2 0.0008 1.7E-08 76.2 8.2 161 56-230 321-506 (784)
234 PF10443 RNA12: RNA12 protein; 97.2 0.014 3E-07 59.7 16.0 195 62-267 1-284 (431)
235 KOG4579 Leucine-rich repeat (L 97.2 2.7E-05 5.8E-10 64.9 -2.8 105 542-662 28-140 (177)
236 KOG0730 AAA+-type ATPase [Post 97.2 0.0042 9.1E-08 66.0 12.1 171 59-255 436-637 (693)
237 KOG4579 Leucine-rich repeat (L 97.2 4.3E-05 9.3E-10 63.7 -2.0 77 590-679 54-134 (177)
238 PF02562 PhoH: PhoH-like prote 97.2 0.0014 2.9E-08 60.8 7.5 124 62-200 5-156 (205)
239 PRK04132 replication factor C 97.2 0.014 3.1E-07 65.9 16.8 153 85-258 569-728 (846)
240 COG2607 Predicted ATPase (AAA+ 97.1 0.004 8.7E-08 57.6 10.0 115 57-200 60-183 (287)
241 KOG0734 AAA+-type ATPase conta 97.1 0.0041 8.8E-08 64.1 11.0 49 56-104 303-361 (752)
242 KOG0741 AAA+-type ATPase [Post 97.1 0.023 4.9E-07 58.8 16.2 130 78-229 536-685 (744)
243 PF14532 Sigma54_activ_2: Sigm 97.1 0.00058 1.3E-08 60.0 4.3 45 60-104 1-45 (138)
244 cd00561 CobA_CobO_BtuR ATP:cor 97.1 0.0088 1.9E-07 53.0 11.6 119 81-201 3-139 (159)
245 PRK05541 adenylylsulfate kinas 97.1 0.0013 2.8E-08 60.7 6.7 37 79-115 6-42 (176)
246 TIGR00763 lon ATP-dependent pr 97.1 0.0046 9.9E-08 70.9 12.5 52 57-108 320-375 (775)
247 cd03228 ABCC_MRP_Like The MRP 97.1 0.0032 6.9E-08 57.7 9.2 130 79-214 27-167 (171)
248 TIGR02237 recomb_radB DNA repa 97.1 0.0018 3.8E-08 61.7 7.8 38 78-115 10-47 (209)
249 cd01133 F1-ATPase_beta F1 ATP 97.1 0.0015 3.3E-08 63.3 7.1 92 79-172 68-174 (274)
250 smart00763 AAA_PrkA PrkA AAA d 97.0 0.00062 1.3E-08 68.4 4.4 49 58-106 52-104 (361)
251 KOG3665 ZYG-1-like serine/thre 97.0 0.00059 1.3E-08 75.9 4.6 85 514-600 144-231 (699)
252 cd01131 PilT Pilus retraction 97.0 0.0019 4.1E-08 60.7 7.3 112 81-205 2-114 (198)
253 KOG0731 AAA+-type ATPase conta 97.0 0.012 2.6E-07 64.6 14.0 179 55-258 309-521 (774)
254 PF00158 Sigma54_activat: Sigm 97.0 0.0017 3.6E-08 58.9 6.5 45 59-103 1-45 (168)
255 KOG2123 Uncharacterized conser 97.0 4.2E-05 9.1E-10 71.6 -3.9 86 564-685 18-105 (388)
256 PF00448 SRP54: SRP54-type pro 97.0 0.0021 4.5E-08 59.9 6.9 36 80-115 1-36 (196)
257 KOG2004 Mitochondrial ATP-depe 97.0 0.00057 1.2E-08 72.7 3.4 159 55-230 409-596 (906)
258 PF13207 AAA_17: AAA domain; P 97.0 0.00065 1.4E-08 58.2 3.3 23 82-104 1-23 (121)
259 KOG0739 AAA+-type ATPase [Post 97.0 0.011 2.3E-07 56.5 11.3 173 57-255 133-335 (439)
260 cd01394 radB RadB. The archaea 96.9 0.0024 5.3E-08 61.2 7.6 49 67-115 6-54 (218)
261 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.9 0.0049 1.1E-07 54.5 8.7 105 79-205 25-132 (144)
262 PRK04296 thymidine kinase; Pro 96.9 0.0048 1E-07 57.4 8.8 111 81-201 3-117 (190)
263 cd01120 RecA-like_NTPases RecA 96.9 0.0049 1.1E-07 55.9 8.6 34 82-115 1-34 (165)
264 PRK11889 flhF flagellar biosyn 96.9 0.018 3.8E-07 58.6 12.8 37 79-115 240-276 (436)
265 KOG2739 Leucine-rich acidic nu 96.8 0.00079 1.7E-08 63.2 3.0 55 644-700 90-154 (260)
266 PF13671 AAA_33: AAA domain; P 96.8 0.0057 1.2E-07 54.1 8.5 24 82-105 1-24 (143)
267 cd01123 Rad51_DMC1_radA Rad51_ 96.8 0.0038 8.2E-08 60.7 8.0 47 69-115 8-60 (235)
268 TIGR02974 phageshock_pspF psp 96.8 0.0069 1.5E-07 61.6 10.0 45 59-103 1-45 (329)
269 PHA00729 NTP-binding motif con 96.8 0.0071 1.5E-07 56.8 9.1 27 79-105 16-42 (226)
270 cd01393 recA_like RecA is a b 96.8 0.0072 1.6E-07 58.4 9.7 48 68-115 7-60 (226)
271 COG0464 SpoVK ATPases of the A 96.8 0.011 2.3E-07 64.6 11.8 171 59-253 244-445 (494)
272 PF07728 AAA_5: AAA domain (dy 96.8 0.00052 1.1E-08 60.5 1.2 23 83-105 2-24 (139)
273 PF10236 DAP3: Mitochondrial r 96.8 0.046 9.9E-07 55.1 15.3 47 211-257 258-305 (309)
274 KOG0728 26S proteasome regulat 96.8 0.09 2E-06 49.0 15.5 145 60-230 150-331 (404)
275 PRK07261 topology modulation p 96.8 0.0064 1.4E-07 55.5 8.3 23 82-104 2-24 (171)
276 cd03247 ABCC_cytochrome_bd The 96.7 0.0057 1.2E-07 56.4 8.0 127 79-214 27-169 (178)
277 KOG1969 DNA replication checkp 96.7 0.0043 9.4E-08 66.5 7.8 76 78-173 324-399 (877)
278 cd03230 ABC_DR_subfamily_A Thi 96.7 0.014 3E-07 53.6 10.4 122 79-205 25-160 (173)
279 PRK06696 uridine kinase; Valid 96.7 0.0027 5.9E-08 60.9 5.9 46 62-107 3-49 (223)
280 cd03223 ABCD_peroxisomal_ALDP 96.7 0.007 1.5E-07 55.0 8.2 127 79-214 26-160 (166)
281 KOG0733 Nuclear AAA ATPase (VC 96.7 0.012 2.7E-07 61.8 10.7 129 80-231 545-693 (802)
282 COG1618 Predicted nucleotide k 96.7 0.0019 4.1E-08 55.8 4.1 36 80-115 5-42 (179)
283 PRK06067 flagellar accessory p 96.7 0.0099 2.1E-07 57.7 9.7 49 67-115 12-60 (234)
284 cd03214 ABC_Iron-Siderophores_ 96.7 0.013 2.8E-07 54.2 9.9 122 79-204 24-162 (180)
285 PRK10733 hflB ATP-dependent me 96.7 0.0099 2.1E-07 66.5 10.7 128 81-231 186-336 (644)
286 TIGR01817 nifA Nif-specific re 96.7 0.012 2.5E-07 64.9 11.0 50 55-104 194-243 (534)
287 PRK15455 PrkA family serine pr 96.6 0.002 4.4E-08 68.2 4.4 50 57-106 76-129 (644)
288 cd01121 Sms Sms (bacterial rad 96.6 0.0094 2E-07 61.4 9.2 50 66-115 68-117 (372)
289 KOG0652 26S proteasome regulat 96.6 0.078 1.7E-06 49.7 14.1 163 55-244 169-370 (424)
290 COG4608 AppF ABC-type oligopep 96.6 0.0093 2E-07 56.9 8.4 124 79-206 38-176 (268)
291 PRK06762 hypothetical protein; 96.6 0.046 9.9E-07 49.8 12.9 25 80-104 2-26 (166)
292 cd02027 APSK Adenosine 5'-phos 96.6 0.026 5.7E-07 50.2 10.9 24 82-105 1-24 (149)
293 PRK05022 anaerobic nitric oxid 96.6 0.016 3.5E-07 63.1 11.4 50 55-104 185-234 (509)
294 TIGR03499 FlhF flagellar biosy 96.6 0.013 2.9E-07 58.2 9.9 37 79-115 193-231 (282)
295 cd03238 ABC_UvrA The excision 96.6 0.016 3.4E-07 53.0 9.4 24 79-102 20-43 (176)
296 COG1136 SalX ABC-type antimicr 96.6 0.023 5E-07 53.3 10.7 62 152-215 151-216 (226)
297 cd03222 ABC_RNaseL_inhibitor T 96.6 0.014 3E-07 53.4 9.1 116 79-215 24-146 (177)
298 COG0572 Udk Uridine kinase [Nu 96.6 0.0049 1.1E-07 57.1 6.1 30 78-107 6-35 (218)
299 KOG2739 Leucine-rich acidic nu 96.6 0.00073 1.6E-08 63.4 0.7 40 563-602 63-104 (260)
300 TIGR03574 selen_PSTK L-seryl-t 96.5 0.013 2.8E-07 57.4 9.5 25 83-107 2-26 (249)
301 PRK14722 flhF flagellar biosyn 96.5 0.011 2.5E-07 60.3 9.1 37 79-115 136-174 (374)
302 COG4088 Predicted nucleotide k 96.5 0.019 4.1E-07 51.9 9.2 33 81-113 2-34 (261)
303 cd03216 ABC_Carb_Monos_I This 96.5 0.0078 1.7E-07 54.5 7.1 118 79-204 25-146 (163)
304 KOG2123 Uncharacterized conser 96.5 0.00018 3.9E-09 67.5 -3.7 97 539-651 17-123 (388)
305 PRK07667 uridine kinase; Provi 96.5 0.0057 1.2E-07 57.2 6.2 42 66-107 3-44 (193)
306 PRK15429 formate hydrogenlyase 96.5 0.02 4.4E-07 65.0 11.8 50 55-104 374-423 (686)
307 KOG0729 26S proteasome regulat 96.5 0.019 4E-07 53.9 9.2 29 78-106 209-237 (435)
308 cd03233 ABC_PDR_domain1 The pl 96.5 0.03 6.5E-07 52.8 11.0 27 78-104 31-57 (202)
309 KOG0727 26S proteasome regulat 96.4 0.036 7.7E-07 51.6 10.7 52 57-108 155-217 (408)
310 PRK12723 flagellar biosynthesi 96.4 0.039 8.4E-07 57.0 12.3 27 79-105 173-199 (388)
311 COG1124 DppF ABC-type dipeptid 96.4 0.017 3.6E-07 54.0 8.6 25 78-102 31-55 (252)
312 COG1224 TIP49 DNA helicase TIP 96.4 0.011 2.4E-07 58.0 7.7 53 55-107 37-92 (450)
313 TIGR02012 tigrfam_recA protein 96.4 0.0098 2.1E-07 59.5 7.6 49 67-115 41-90 (321)
314 PRK09354 recA recombinase A; P 96.4 0.01 2.2E-07 59.8 7.8 50 66-115 45-95 (349)
315 PF07726 AAA_3: ATPase family 96.4 0.003 6.5E-08 53.0 3.2 29 83-111 2-30 (131)
316 cd03246 ABCC_Protease_Secretio 96.4 0.015 3.2E-07 53.4 8.2 128 79-214 27-168 (173)
317 COG1875 NYN ribonuclease and A 96.4 0.013 2.8E-07 57.9 7.9 25 78-102 243-267 (436)
318 TIGR02858 spore_III_AA stage I 96.4 0.015 3.2E-07 57.0 8.5 120 79-205 110-234 (270)
319 cd00983 recA RecA is a bacter 96.4 0.011 2.5E-07 59.1 7.8 49 67-115 41-90 (325)
320 COG1066 Sms Predicted ATP-depe 96.4 0.023 5E-07 57.2 9.7 99 66-173 79-180 (456)
321 KOG0735 AAA+-type ATPase [Post 96.3 0.068 1.5E-06 57.5 13.6 175 57-257 667-872 (952)
322 PRK13695 putative NTPase; Prov 96.3 0.0093 2E-07 54.8 6.7 25 82-106 2-26 (174)
323 TIGR00708 cobA cob(I)alamin ad 96.3 0.024 5.3E-07 50.9 8.9 121 80-201 5-141 (173)
324 PRK11608 pspF phage shock prot 96.3 0.0092 2E-07 60.8 7.1 47 57-103 6-52 (326)
325 KOG0743 AAA+-type ATPase [Post 96.3 0.028 6.1E-07 57.5 10.2 152 80-268 235-417 (457)
326 COG0563 Adk Adenylate kinase a 96.3 0.012 2.6E-07 53.8 7.0 23 82-104 2-24 (178)
327 TIGR00390 hslU ATP-dependent p 96.3 0.01 2.2E-07 60.9 7.0 52 57-108 12-75 (441)
328 COG2884 FtsE Predicted ATPase 96.3 0.036 7.8E-07 49.7 9.4 54 152-207 146-204 (223)
329 KOG0726 26S proteasome regulat 96.3 0.043 9.4E-07 52.3 10.5 54 55-108 183-247 (440)
330 cd03237 ABC_RNaseL_inhibitor_d 96.3 0.033 7.2E-07 54.3 10.4 25 79-103 24-48 (246)
331 PRK12726 flagellar biosynthesi 96.3 0.056 1.2E-06 54.9 12.0 37 79-115 205-241 (407)
332 cd03232 ABC_PDR_domain2 The pl 96.3 0.034 7.4E-07 52.0 10.0 24 79-102 32-55 (192)
333 TIGR01359 UMP_CMP_kin_fam UMP- 96.2 0.04 8.8E-07 51.1 10.5 23 82-104 1-23 (183)
334 PF01583 APS_kinase: Adenylyls 96.2 0.0078 1.7E-07 53.1 5.1 36 80-115 2-37 (156)
335 TIGR03877 thermo_KaiC_1 KaiC d 96.2 0.021 4.5E-07 55.4 8.6 48 68-115 9-56 (237)
336 cd03229 ABC_Class3 This class 96.2 0.02 4.4E-07 52.8 8.2 25 79-103 25-49 (178)
337 PRK00889 adenylylsulfate kinas 96.2 0.041 9E-07 50.5 10.3 28 79-106 3-30 (175)
338 cd03278 ABC_SMC_barmotin Barmo 96.2 0.038 8.2E-07 51.8 10.0 21 82-102 24-44 (197)
339 PRK10867 signal recognition pa 96.2 0.085 1.8E-06 55.4 13.4 29 79-107 99-127 (433)
340 PRK00771 signal recognition pa 96.2 0.06 1.3E-06 56.6 12.2 36 79-114 94-129 (437)
341 COG1121 ZnuC ABC-type Mn/Zn tr 96.2 0.06 1.3E-06 51.5 11.1 124 79-205 29-204 (254)
342 cd03217 ABC_FeS_Assembly ABC-t 96.2 0.032 7E-07 52.5 9.4 25 79-103 25-49 (200)
343 TIGR00416 sms DNA repair prote 96.2 0.02 4.4E-07 60.8 8.9 50 66-115 80-129 (454)
344 PF00910 RNA_helicase: RNA hel 96.1 0.0036 7.9E-08 52.0 2.6 26 83-108 1-26 (107)
345 TIGR01420 pilT_fam pilus retra 96.1 0.015 3.2E-07 59.8 7.6 112 80-203 122-233 (343)
346 PF13604 AAA_30: AAA domain; P 96.1 0.035 7.7E-07 51.9 9.5 116 66-202 7-133 (196)
347 KOG1947 Leucine rich repeat pr 96.1 0.00078 1.7E-08 73.7 -2.0 78 622-704 358-442 (482)
348 PF06068 TIP49: TIP49 C-termin 96.1 0.012 2.5E-07 58.9 6.3 57 55-111 22-81 (398)
349 PF13238 AAA_18: AAA domain; P 96.1 0.0042 9.2E-08 53.7 3.1 22 83-104 1-22 (129)
350 cd01122 GP4d_helicase GP4d_hel 96.1 0.058 1.3E-06 53.7 11.6 56 79-140 29-85 (271)
351 PRK08533 flagellar accessory p 96.1 0.029 6.3E-07 53.9 9.1 38 78-115 22-59 (230)
352 PRK12727 flagellar biosynthesi 96.1 0.03 6.5E-07 59.3 9.7 29 79-107 349-377 (559)
353 cd00267 ABC_ATPase ABC (ATP-bi 96.1 0.017 3.6E-07 52.1 7.0 126 79-214 24-153 (157)
354 PF00485 PRK: Phosphoribulokin 96.1 0.03 6.5E-07 52.4 9.0 26 82-107 1-26 (194)
355 PRK05986 cob(I)alamin adenolsy 96.1 0.033 7.1E-07 50.9 8.6 121 80-201 22-159 (191)
356 PRK05703 flhF flagellar biosyn 96.1 0.037 8E-07 58.3 10.4 36 80-115 221-258 (424)
357 TIGR00064 ftsY signal recognit 96.1 0.034 7.5E-07 54.8 9.4 38 78-115 70-107 (272)
358 PRK14974 cell division protein 96.1 0.068 1.5E-06 54.1 11.7 29 79-107 139-167 (336)
359 PF08433 KTI12: Chromatin asso 96.1 0.029 6.3E-07 55.1 8.8 35 81-115 2-36 (270)
360 CHL00206 ycf2 Ycf2; Provisiona 96.0 0.061 1.3E-06 64.8 12.5 26 79-104 1629-1654(2281)
361 PF07724 AAA_2: AAA domain (Cd 96.0 0.0059 1.3E-07 55.5 3.5 36 80-115 3-39 (171)
362 COG4618 ArpD ABC-type protease 96.0 0.045 9.8E-07 56.7 9.9 23 80-102 362-384 (580)
363 PRK05201 hslU ATP-dependent pr 96.0 0.015 3.3E-07 59.6 6.5 52 57-108 15-78 (443)
364 PF03215 Rad17: Rad17 cell cyc 96.0 0.078 1.7E-06 57.2 12.1 50 64-115 26-78 (519)
365 PRK07132 DNA polymerase III su 95.9 1.1 2.4E-05 44.7 19.4 125 80-229 18-161 (299)
366 PRK11823 DNA repair protein Ra 95.9 0.033 7.2E-07 59.2 9.3 50 66-115 66-115 (446)
367 PRK04301 radA DNA repair and r 95.9 0.028 6E-07 57.3 8.4 59 67-129 89-153 (317)
368 cd03213 ABCG_EPDR ABCG transpo 95.9 0.052 1.1E-06 50.8 9.7 27 78-104 33-59 (194)
369 cd03240 ABC_Rad50 The catalyti 95.9 0.043 9.4E-07 51.7 9.2 60 154-215 132-196 (204)
370 PTZ00301 uridine kinase; Provi 95.9 0.0071 1.5E-07 56.9 3.8 29 80-108 3-31 (210)
371 cd03115 SRP The signal recogni 95.9 0.039 8.4E-07 50.6 8.7 33 82-114 2-34 (173)
372 KOG0736 Peroxisome assembly fa 95.9 0.13 2.9E-06 56.0 13.4 50 57-106 672-731 (953)
373 cd03263 ABC_subfamily_A The AB 95.9 0.053 1.1E-06 52.0 9.9 24 79-102 27-50 (220)
374 cd02019 NK Nucleoside/nucleoti 95.9 0.0063 1.4E-07 45.8 2.7 23 82-104 1-23 (69)
375 cd03369 ABCC_NFT1 Domain 2 of 95.9 0.078 1.7E-06 50.3 10.8 24 79-102 33-56 (207)
376 COG2274 SunT ABC-type bacterio 95.9 0.05 1.1E-06 60.9 10.6 24 79-102 498-521 (709)
377 PF00560 LRR_1: Leucine Rich R 95.9 0.0029 6.3E-08 35.1 0.5 21 646-666 1-21 (22)
378 PRK13543 cytochrome c biogenes 95.9 0.055 1.2E-06 51.6 9.6 24 79-102 36-59 (214)
379 KOG1051 Chaperone HSP104 and r 95.9 0.087 1.9E-06 59.5 12.2 104 57-173 562-672 (898)
380 PTZ00088 adenylate kinase 1; P 95.8 0.028 6.1E-07 53.7 7.4 23 82-104 8-30 (229)
381 COG1120 FepC ABC-type cobalami 95.8 0.04 8.6E-07 53.0 8.3 25 78-102 26-50 (258)
382 PRK13539 cytochrome c biogenes 95.8 0.05 1.1E-06 51.6 9.2 25 79-103 27-51 (207)
383 PRK10820 DNA-binding transcrip 95.8 0.029 6.3E-07 61.2 8.4 49 55-103 202-250 (520)
384 PRK09270 nucleoside triphospha 95.8 0.012 2.6E-07 56.8 4.9 30 78-107 31-60 (229)
385 PRK11174 cysteine/glutathione 95.8 0.033 7.2E-07 62.4 9.1 26 79-104 375-400 (588)
386 TIGR00150 HI0065_YjeE ATPase, 95.8 0.011 2.4E-07 50.6 4.0 26 79-104 21-46 (133)
387 COG1419 FlhF Flagellar GTP-bin 95.8 0.049 1.1E-06 55.4 9.1 86 80-171 203-291 (407)
388 cd03283 ABC_MutS-like MutS-lik 95.8 0.061 1.3E-06 50.4 9.4 23 81-103 26-48 (199)
389 cd03244 ABCC_MRP_domain2 Domai 95.8 0.087 1.9E-06 50.6 10.8 24 79-102 29-52 (221)
390 TIGR02868 CydC thiol reductant 95.8 0.044 9.5E-07 60.6 9.8 25 78-102 359-383 (529)
391 PRK00279 adk adenylate kinase; 95.8 0.05 1.1E-06 51.9 8.9 23 82-104 2-24 (215)
392 PRK14247 phosphate ABC transpo 95.8 0.095 2.1E-06 51.4 11.1 26 79-104 28-53 (250)
393 PF03308 ArgK: ArgK protein; 95.8 0.021 4.6E-07 54.2 6.1 43 65-107 14-56 (266)
394 PRK13657 cyclic beta-1,2-gluca 95.8 0.036 7.7E-07 62.1 9.1 24 79-102 360-383 (588)
395 TIGR00235 udk uridine kinase. 95.7 0.0096 2.1E-07 56.5 3.9 28 78-105 4-31 (207)
396 PRK04040 adenylate kinase; Pro 95.7 0.0095 2.1E-07 55.2 3.7 26 80-105 2-27 (188)
397 PRK05480 uridine/cytidine kina 95.7 0.0094 2E-07 56.7 3.7 26 79-104 5-30 (209)
398 COG0468 RecA RecA/RadA recombi 95.7 0.06 1.3E-06 52.6 9.2 38 78-115 58-95 (279)
399 cd03215 ABC_Carb_Monos_II This 95.7 0.094 2E-06 48.5 10.2 25 79-103 25-49 (182)
400 PRK10416 signal recognition pa 95.7 0.1 2.2E-06 52.7 11.1 36 79-114 113-148 (318)
401 PRK03839 putative kinase; Prov 95.7 0.0088 1.9E-07 55.3 3.2 24 82-105 2-25 (180)
402 PRK09544 znuC high-affinity zi 95.7 0.054 1.2E-06 53.0 8.9 25 79-103 29-53 (251)
403 TIGR02236 recomb_radA DNA repa 95.7 0.05 1.1E-06 55.3 9.0 48 68-115 83-136 (310)
404 PRK00625 shikimate kinase; Pro 95.7 0.0087 1.9E-07 54.5 3.0 24 82-105 2-25 (173)
405 COG2401 ABC-type ATPase fused 95.7 0.025 5.4E-07 56.8 6.3 132 80-211 409-579 (593)
406 PRK14527 adenylate kinase; Pro 95.7 0.031 6.7E-07 52.2 6.8 26 79-104 5-30 (191)
407 TIGR01069 mutS2 MutS2 family p 95.6 0.03 6.4E-07 63.7 7.8 24 80-103 322-345 (771)
408 PRK04328 hypothetical protein; 95.6 0.049 1.1E-06 53.2 8.4 48 68-115 11-58 (249)
409 COG0465 HflB ATP-dependent Zn 95.6 0.097 2.1E-06 56.5 11.1 177 55-257 148-357 (596)
410 TIGR00958 3a01208 Conjugate Tr 95.6 0.052 1.1E-06 62.1 9.9 25 79-103 506-530 (711)
411 cd03253 ABCC_ATM1_transporter 95.6 0.074 1.6E-06 51.7 9.7 25 79-103 26-50 (236)
412 PRK08233 hypothetical protein; 95.6 0.0093 2E-07 55.3 3.2 26 80-105 3-28 (182)
413 PF03205 MobB: Molybdopterin g 95.6 0.016 3.4E-07 50.7 4.4 28 81-108 1-28 (140)
414 TIGR01425 SRP54_euk signal rec 95.6 0.17 3.7E-06 52.9 12.5 36 79-114 99-134 (429)
415 cd03251 ABCC_MsbA MsbA is an e 95.6 0.069 1.5E-06 51.8 9.4 25 79-103 27-51 (234)
416 cd03281 ABC_MSH5_euk MutS5 hom 95.6 0.027 5.8E-07 53.4 6.3 119 80-206 29-160 (213)
417 TIGR02238 recomb_DMC1 meiotic 95.6 0.042 9.1E-07 55.3 7.9 60 67-130 83-148 (313)
418 cd01125 repA Hexameric Replica 95.6 0.12 2.7E-06 50.1 11.1 24 82-105 3-26 (239)
419 PRK05917 DNA polymerase III su 95.6 0.44 9.5E-06 47.0 14.6 128 66-217 6-154 (290)
420 COG0467 RAD55 RecA-superfamily 95.6 0.036 7.7E-07 54.7 7.2 39 77-115 20-58 (260)
421 PRK14259 phosphate ABC transpo 95.6 0.13 2.9E-06 50.9 11.3 25 79-103 38-62 (269)
422 PRK14721 flhF flagellar biosyn 95.5 0.076 1.7E-06 55.3 9.8 25 79-103 190-214 (420)
423 cd03254 ABCC_Glucan_exporter_l 95.5 0.08 1.7E-06 51.1 9.6 25 79-103 28-52 (229)
424 PF00625 Guanylate_kin: Guanyl 95.5 0.012 2.7E-07 54.5 3.7 36 80-115 2-37 (183)
425 cd03264 ABC_drug_resistance_li 95.5 0.1 2.2E-06 49.7 10.0 21 82-102 27-47 (211)
426 TIGR02655 circ_KaiC circadian 95.5 0.047 1E-06 59.0 8.5 50 66-115 249-298 (484)
427 PRK14528 adenylate kinase; Pro 95.5 0.073 1.6E-06 49.3 8.7 24 81-104 2-25 (186)
428 PRK14261 phosphate ABC transpo 95.5 0.12 2.6E-06 50.8 10.7 24 79-102 31-54 (253)
429 PRK05973 replicative DNA helic 95.5 0.067 1.5E-06 51.1 8.5 50 79-134 63-112 (237)
430 cd03248 ABCC_TAP TAP, the Tran 95.5 0.098 2.1E-06 50.4 9.9 25 79-103 39-63 (226)
431 PF01078 Mg_chelatase: Magnesi 95.5 0.015 3.2E-07 53.7 3.8 43 56-102 2-44 (206)
432 COG0541 Ffh Signal recognition 95.5 0.2 4.3E-06 51.3 12.0 41 66-106 79-126 (451)
433 PF06309 Torsin: Torsin; Inte 95.4 0.056 1.2E-06 45.4 6.8 45 59-103 27-76 (127)
434 TIGR02203 MsbA_lipidA lipid A 95.4 0.044 9.5E-07 61.3 8.3 25 79-103 357-381 (571)
435 PRK14249 phosphate ABC transpo 95.4 0.13 2.9E-06 50.4 10.9 25 79-103 29-53 (251)
436 COG5635 Predicted NTPase (NACH 95.4 0.13 2.8E-06 59.7 12.2 197 81-281 223-448 (824)
437 PRK06547 hypothetical protein; 95.4 0.014 3.1E-07 53.0 3.6 27 78-104 13-39 (172)
438 cd03289 ABCC_CFTR2 The CFTR su 95.4 0.11 2.3E-06 51.6 10.0 26 79-104 29-54 (275)
439 cd03287 ABC_MSH3_euk MutS3 hom 95.4 0.036 7.7E-07 52.7 6.3 119 79-206 30-160 (222)
440 PRK11176 lipid transporter ATP 95.4 0.045 9.8E-07 61.3 8.2 25 79-103 368-392 (582)
441 COG1117 PstB ABC-type phosphat 95.4 0.091 2E-06 48.1 8.4 25 78-102 31-55 (253)
442 PF08423 Rad51: Rad51; InterP 95.4 0.05 1.1E-06 53.2 7.4 64 68-136 26-95 (256)
443 cd02021 GntK Gluconate kinase 95.4 0.16 3.6E-06 45.1 10.3 22 82-103 1-22 (150)
444 PF13306 LRR_5: Leucine rich r 95.4 0.063 1.4E-06 46.3 7.4 59 537-597 8-66 (129)
445 PRK14237 phosphate transporter 95.4 0.14 3.1E-06 50.7 10.9 26 79-104 45-70 (267)
446 cd02028 UMPK_like Uridine mono 95.4 0.019 4.1E-07 52.8 4.3 25 82-106 1-25 (179)
447 PRK00131 aroK shikimate kinase 95.4 0.013 2.8E-07 54.0 3.2 26 80-105 4-29 (175)
448 TIGR01360 aden_kin_iso1 adenyl 95.4 0.013 2.9E-07 54.6 3.3 26 79-104 2-27 (188)
449 TIGR03796 NHPM_micro_ABC1 NHPM 95.4 0.046 1E-06 62.7 8.4 24 79-102 504-527 (710)
450 PRK13948 shikimate kinase; Pro 95.4 0.024 5.3E-07 52.0 4.9 28 79-106 9-36 (182)
451 PRK07276 DNA polymerase III su 95.3 1.1 2.3E-05 44.5 16.5 68 160-228 103-173 (290)
452 KOG1532 GTPase XAB1, interacts 95.3 0.017 3.7E-07 54.5 3.7 32 79-110 18-49 (366)
453 TIGR00455 apsK adenylylsulfate 95.3 0.15 3.3E-06 47.2 10.2 28 79-106 17-44 (184)
454 COG0396 sufC Cysteine desulfur 95.3 0.11 2.5E-06 48.2 8.9 61 152-212 153-216 (251)
455 PRK10744 pstB phosphate transp 95.3 0.17 3.8E-06 49.9 11.2 25 79-103 38-62 (260)
456 cd03250 ABCC_MRP_domain1 Domai 95.3 0.24 5.3E-06 46.7 11.8 26 78-103 29-54 (204)
457 COG2842 Uncharacterized ATPase 95.3 0.19 4.1E-06 48.7 10.7 119 55-184 70-189 (297)
458 PRK10751 molybdopterin-guanine 95.3 0.031 6.8E-07 50.4 5.2 28 79-106 5-32 (173)
459 KOG0736 Peroxisome assembly fa 95.3 0.38 8.3E-06 52.6 13.9 174 58-256 402-599 (953)
460 PF00406 ADK: Adenylate kinase 95.3 0.048 1E-06 48.7 6.5 20 85-104 1-20 (151)
461 PRK13947 shikimate kinase; Pro 95.3 0.014 2.9E-07 53.6 3.0 25 82-106 3-27 (171)
462 PRK10463 hydrogenase nickel in 95.3 0.033 7.2E-07 54.6 5.7 35 78-112 102-136 (290)
463 TIGR03375 type_I_sec_LssB type 95.2 0.059 1.3E-06 61.6 8.7 24 79-102 490-513 (694)
464 KOG0058 Peptide exporter, ABC 95.2 0.065 1.4E-06 58.2 8.3 24 79-102 493-516 (716)
465 PRK06995 flhF flagellar biosyn 95.2 0.1 2.2E-06 55.4 9.6 27 79-105 255-281 (484)
466 PLN03187 meiotic recombination 95.2 0.071 1.5E-06 54.1 8.2 58 69-130 115-178 (344)
467 cd00227 CPT Chloramphenicol (C 95.2 0.016 3.4E-07 53.3 3.2 25 81-105 3-27 (175)
468 COG0703 AroK Shikimate kinase 95.2 0.015 3.3E-07 51.7 2.9 28 81-108 3-30 (172)
469 PRK03846 adenylylsulfate kinas 95.2 0.028 6.1E-07 52.8 5.0 37 78-114 22-58 (198)
470 COG1428 Deoxynucleoside kinase 95.2 0.016 3.5E-07 53.0 3.0 26 80-105 4-29 (216)
471 TIGR03740 galliderm_ABC gallid 95.2 0.13 2.9E-06 49.4 9.6 25 79-103 25-49 (223)
472 PRK05342 clpX ATP-dependent pr 95.2 0.022 4.8E-07 59.5 4.5 50 57-106 71-134 (412)
473 TIGR02857 CydD thiol reductant 95.2 0.085 1.8E-06 58.3 9.4 24 79-102 347-370 (529)
474 TIGR03600 phage_DnaB phage rep 95.2 0.36 7.8E-06 51.4 13.8 56 79-140 193-249 (421)
475 TIGR01846 type_I_sec_HlyB type 95.2 0.059 1.3E-06 61.6 8.4 24 79-102 482-505 (694)
476 TIGR01193 bacteriocin_ABC ABC- 95.1 0.058 1.3E-06 61.9 8.3 24 79-102 499-522 (708)
477 COG1131 CcmA ABC-type multidru 95.1 0.27 5.8E-06 49.3 12.0 26 79-104 30-55 (293)
478 COG1703 ArgK Putative periplas 95.1 0.045 9.7E-07 52.9 6.0 47 66-112 37-83 (323)
479 PRK05537 bifunctional sulfate 95.1 0.029 6.3E-07 61.4 5.5 52 55-106 367-418 (568)
480 KOG1970 Checkpoint RAD17-RFC c 95.1 0.15 3.3E-06 53.4 10.2 41 64-104 89-134 (634)
481 PF13504 LRR_7: Leucine rich r 95.1 0.01 2.2E-07 30.5 1.0 17 645-661 1-17 (17)
482 cd02025 PanK Pantothenate kina 95.1 0.084 1.8E-06 50.4 8.0 24 82-105 1-24 (220)
483 PRK14723 flhF flagellar biosyn 95.1 0.17 3.6E-06 56.7 11.3 25 80-104 185-209 (767)
484 TIGR03522 GldA_ABC_ATP gliding 95.1 0.21 4.6E-06 50.4 11.3 25 78-102 26-50 (301)
485 COG1102 Cmk Cytidylate kinase 95.1 0.017 3.6E-07 50.2 2.7 24 82-105 2-25 (179)
486 TIGR02329 propionate_PrpR prop 95.1 0.059 1.3E-06 58.4 7.6 48 56-103 211-258 (526)
487 cd00071 GMPK Guanosine monopho 95.1 0.015 3.2E-07 50.8 2.5 25 83-107 2-26 (137)
488 smart00534 MUTSac ATPase domai 95.1 0.11 2.3E-06 48.3 8.3 21 82-102 1-21 (185)
489 PF03266 NTPase_1: NTPase; In 95.1 0.019 4.1E-07 52.0 3.2 24 83-106 2-25 (168)
490 PRK14526 adenylate kinase; Pro 95.1 0.068 1.5E-06 50.5 7.0 22 83-104 3-24 (211)
491 cd01124 KaiC KaiC is a circadi 95.1 0.045 9.9E-07 50.9 5.9 33 83-115 2-34 (187)
492 COG2019 AdkA Archaeal adenylat 95.1 0.022 4.7E-07 49.7 3.3 25 80-104 4-28 (189)
493 PRK13949 shikimate kinase; Pro 95.0 0.017 3.7E-07 52.5 2.9 24 82-105 3-26 (169)
494 PF12775 AAA_7: P-loop contain 95.0 0.014 3.1E-07 57.5 2.5 25 80-104 33-57 (272)
495 PRK12724 flagellar biosynthesi 95.0 0.099 2.1E-06 54.1 8.6 25 80-104 223-247 (432)
496 cd01428 ADK Adenylate kinase ( 95.0 0.18 3.8E-06 47.3 9.8 22 83-104 2-23 (194)
497 PF00560 LRR_1: Leucine Rich R 95.0 0.012 2.7E-07 32.6 1.1 21 690-711 1-21 (22)
498 cd03243 ABC_MutS_homologs The 95.0 0.037 7.9E-07 52.3 5.1 22 81-102 30-51 (202)
499 COG0488 Uup ATPase components 95.0 0.12 2.6E-06 55.8 9.5 134 80-216 348-511 (530)
500 TIGR00959 ffh signal recogniti 95.0 0.22 4.7E-06 52.3 11.1 26 80-105 99-124 (428)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.1e-82 Score=742.62 Aligned_cols=684 Identities=38% Similarity=0.626 Sum_probs=585.0
Q ss_pred CCCCEEEeEeeccCccccccccCchHHHHHHHHhhC-hhHHHHHHHHHHHhccCC-------------------------
Q 042374 1 MNGQIVIPVFYHVDPSDVRKQSGSFGEAFVEYEKNF-PHKVQKWRDALTEASNST------------------------- 54 (714)
Q Consensus 1 ~~~~~~~pv~~~v~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------------------- 54 (714)
+.||+|+||||+|+|++||+|+|.|+++|.+++.+. .+++++|++|+.++++..
T Consensus 96 ~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l 175 (1153)
T PLN03210 96 ELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKL 175 (1153)
T ss_pred hcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhh
Confidence 358999999999999999999999999999988654 378999999999998776
Q ss_pred ------CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeec--hhcc---c-
Q 042374 55 ------DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANV--REES---N- 122 (714)
Q Consensus 55 ------~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~~~---~- 122 (714)
+.+.+|||+.+++++..++..+.++.++|+||||||+||||||+++|+++..+|+..+|+... .... .
T Consensus 176 ~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~ 255 (1153)
T PLN03210 176 NLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSS 255 (1153)
T ss_pred ccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhccc
Confidence 456799999999999999987777899999999999999999999999999999999888531 1100 0
Q ss_pred ----cc-ChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCCHHHHHHHhcCCCCCCCCcEEEEEc
Q 042374 123 ----KM-GAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDGFTQLESLAGELDKFTTGSRIIITT 197 (714)
Q Consensus 123 ----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IliTt 197 (714)
.. ....++++++.++++........ ...+++.++++|+||||||||+. .+|+.+.....+.++||+|||||
T Consensus 256 ~~~~~~~~~~~l~~~~l~~il~~~~~~~~~---~~~~~~~L~~krvLLVLDdv~~~-~~l~~L~~~~~~~~~GsrIIiTT 331 (1153)
T PLN03210 256 ANPDDYNMKLHLQRAFLSEILDKKDIKIYH---LGAMEERLKHRKVLIFIDDLDDQ-DVLDALAGQTQWFGSGSRIIVIT 331 (1153)
T ss_pred ccccccchhHHHHHHHHHHHhCCCCcccCC---HHHHHHHHhCCeEEEEEeCCCCH-HHHHHHHhhCccCCCCcEEEEEe
Confidence 01 12345666677766554332221 25677889999999999999998 88999988777778999999999
Q ss_pred CChhHHHhcCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHhhhhhccCCHHHHHHHH
Q 042374 198 RDKQVLDKCGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVLGSSLYQKSKQQWEDRL 277 (714)
Q Consensus 198 R~~~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~l 277 (714)
|+..++..+++.++|+++.++.++||+||+++||+...++.++.+++++|+++|+|+|||++++|+.+++++..+|+.++
T Consensus 332 rd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l 411 (1153)
T PLN03210 332 KDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDML 411 (1153)
T ss_pred CcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999988878889999999999999999999998877777889999999999999999999999999999999999999
Q ss_pred HHHhcCCCchHHHHHHHhhhcCch-hhHhhhhhccccccCcccc------------------------------------
Q 042374 278 HNLRLISEPNIYKVLKISYDELNS-KEKEMFLDIACFFKGEDLD------------------------------------ 320 (714)
Q Consensus 278 ~~l~~~~~~~~~~~l~ls~~~L~~-~~k~~~~~~~~fp~~~~~~------------------------------------ 320 (714)
++++...+.++..++++||++|++ ..|.||+++|+|+.++.++
T Consensus 412 ~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MH 491 (1153)
T PLN03210 412 PRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMH 491 (1153)
T ss_pred HHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhh
Confidence 999988888999999999999986 5899999999999886654
Q ss_pred -------------------------------------ccccceeeeecccCCCceeeeCHHHHhcccCceEEEEeCCCCC
Q 042374 321 -------------------------------------LGTDNIEGIFLNLSKINDLHLSPQAFAKMSNLRLLKFYMPEHD 363 (714)
Q Consensus 321 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 363 (714)
.+...++++..+........+.+.+|..|.+|++|.+..+...
T Consensus 492 dLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~ 571 (1153)
T PLN03210 492 SLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWD 571 (1153)
T ss_pred hHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccccc
Confidence 1112345555566666667788999999999999999876543
Q ss_pred CCCcccceeeccCCcccCCCCceEEEecCCCCCCCCCCCCCCCcccccCCCCCCccccCCcc-cccccEEeccCCccccc
Q 042374 364 GVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTLPFDFEPENLTELSLPYSKVEQSWGGKR-LLSSKFIDLSHSQYLIR 442 (714)
Q Consensus 364 ~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~-~~~L~~L~l~~~~~~~~ 442 (714)
. ......+++.++..+|..++.|++.++++..+|..+.+.+|+.|++.+|++..+|.+.. +++|+.|++++|.....
T Consensus 572 ~--~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ 649 (1153)
T PLN03210 572 Q--KKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKE 649 (1153)
T ss_pred c--cccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCc
Confidence 2 12245667788889999999999999999999999999999999999999999988765 99999999999988888
Q ss_pred cCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccce
Q 042374 443 MPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTK 522 (714)
Q Consensus 443 ~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~ 522 (714)
+|+++.+++|++|++++|..+..+|..++++++|+.|++++|..++.+|..+.+.+|+.|.+++|..+..+|....+|+.
T Consensus 650 ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~ 729 (1153)
T PLN03210 650 IPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISW 729 (1153)
T ss_pred CCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCe
Confidence 89999999999999999999999999999999999999999999999999889999999999999999999998899999
Q ss_pred EecccccceEeccccCCCCCCcEEecCCCCCCc-------cccccccCCCCCCEEEecCCCCCCCCchhhhccccccccc
Q 042374 523 LILWETAIKEVPSSVGCLTNLKVLSLSQCPRLK-------RISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNA 595 (714)
Q Consensus 523 L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~-------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 595 (714)
|++.+|.+..+|..+ .+++|++|.+.++.... ..+......++|+.|++++|.....+|..++++++|+.|+
T Consensus 730 L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~ 808 (1153)
T PLN03210 730 LDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLE 808 (1153)
T ss_pred eecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEE
Confidence 999999999999876 58899999988754211 1111223457899999999988888999999999999999
Q ss_pred cCCc-cccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc-C-CCCCCCCEEECCCCCCcccchhhccCCCCCe
Q 042374 596 LGRT-KIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL-N-GCLSSLEYLDLSGNDFESLPASIKQLSRLRK 672 (714)
Q Consensus 596 l~~~-~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-~-~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~ 672 (714)
+++| .++.+|.. + ++++|+.|++++|.... + ...++|+.|+|++|.++.+|.++..+++|+.
T Consensus 809 Ls~C~~L~~LP~~--------------~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~ 873 (1153)
T PLN03210 809 IENCINLETLPTG--------------I-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSF 873 (1153)
T ss_pred CCCCCCcCeeCCC--------------C-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCE
Confidence 9985 57666653 3 68899999999986433 2 3356899999999999999999999999999
Q ss_pred eccccCccccccCCC---cCcccEeecccCccccccc
Q 042374 673 LHLCYCDKLQSIPEL---PLSLKWLDASNCERLQTFP 706 (714)
Q Consensus 673 L~l~~~~~~~~lp~~---~~~L~~L~l~~c~~l~~lp 706 (714)
|++++|+.+..+|.. +++|+.+++++|++|+.++
T Consensus 874 L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 874 LDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred EECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 999999999988863 4678899999999998664
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-60 Score=527.58 Aligned_cols=432 Identities=25% Similarity=0.339 Sum_probs=346.5
Q ss_pred ccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHH--H-HhhcccceEEeeechhcccccChHHHHHHHHHH
Q 042374 60 VGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFH--Q-ISRHFQGKCFMANVREESNKMGAIHVRDEVISQ 136 (714)
Q Consensus 60 vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~--~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (714)
||.+..++.+.+.|..++. ++++|+||||+||||||+.+++ . ++.+|+.++||. +|..++...++++|+..
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHH
Confidence 9999999999999976543 8999999999999999999998 3 788999999999 89999999999999998
Q ss_pred HhCCCCCcccc-hhhH-HHHHHHhcCCcEEEEEeCCCCCHHHHHHHhcCCCCCCCCcEEEEEcCChhHHHh-cCCCeEEe
Q 042374 137 VLGDKNLKIGT-LVIH-QNIRKRLRQVKMLIVLDAVHDGFTQLESLAGELDKFTTGSRIIITTRDKQVLDK-CGVNYVYE 213 (714)
Q Consensus 137 ~~~~~~~~~~~-~~~~-~~l~~~l~~k~~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~v~~~-~~~~~~~~ 213 (714)
+...+...... .+.. ..+.+.|.++|+++|+||||+. ..|+.+..++|....||+|++|||+.+|+.. +++...++
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~-~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~ 313 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE-VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIE 313 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc-ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccc
Confidence 43322222221 1333 8889999999999999999998 8899999999988889999999999999998 78888999
Q ss_pred cCCCCHHHHHHHHHHhhhhc-CCCChhHHHHHHHHHHHhcCCChhhHHhhhhhccC-CHHHHHHHHHHHhcC-C------
Q 042374 214 VEGLEHNKAFELFYRKAFRQ-NNYPPDFLGLSLEVVHYARNNPLALEVLGSSLYQK-SKQQWEDRLHNLRLI-S------ 284 (714)
Q Consensus 214 l~~L~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~-~~~~w~~~l~~l~~~-~------ 284 (714)
++.|+++|||.||++.+|.. ....+...++|++++++|+|+|||++++|+.|+.+ +.++|+++.+.+.+. .
T Consensus 314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~ 393 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGM 393 (889)
T ss_pred ccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCch
Confidence 99999999999999999876 34445688999999999999999999999999988 688999999988665 1
Q ss_pred CchHHHHHHHhhhcCchhhHhhhhhccccccCcccccc----ccceeeeecccC-CCceeeeCHHHHhcccCceEEEEeC
Q 042374 285 EPNIYKVLKISYDELNSKEKEMFLDIACFFKGEDLDLG----TDNIEGIFLNLS-KINDLHLSPQAFAKMSNLRLLKFYM 359 (714)
Q Consensus 285 ~~~~~~~l~ls~~~L~~~~k~~~~~~~~fp~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~L~~L~l~~ 359 (714)
.+.+++++.+||+.||.+.|.||+|||.||+|++++.. .|..+|++.... .....+.+.++++++.+...+.-..
T Consensus 394 ~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 394 EESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred hhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence 34688999999999999999999999999999999944 466688765522 3445678899999999888776654
Q ss_pred CCCCCCCcccceeeccCCcccCC----C-----CceEEEecCCCCCCCCCCCCCCCcccccCCCCCCccccCCccccccc
Q 042374 360 PEHDGVPITSSKVHLDQGLEYLP----E-----ELRYLHWHEYPLKTLPFDFEPENLTELSLPYSKVEQSWGGKRLLSSK 430 (714)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~l~----~-----~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~ 430 (714)
.. .....+.++|.++.++ . .-+.+.-.+......|........+.+.+.+|.+..+.....++.|+
T Consensus 474 ~~-----~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~ 548 (889)
T KOG4658|consen 474 DE-----GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLR 548 (889)
T ss_pred cc-----cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccc
Confidence 32 1113445555544431 1 11122233345555666667788899999999999888888888999
Q ss_pred EEeccCCcc-ccccC--CCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCC-CCCCcEEEe
Q 042374 431 FIDLSHSQY-LIRMP--DLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLH-FVCPVTINC 504 (714)
Q Consensus 431 ~L~l~~~~~-~~~~~--~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l 504 (714)
+|-+..|.. ....+ .|..++.|++|||++|.....+|.++++|.+||||++++ +.+..+|..+. +..|.+|++
T Consensus 549 tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl 625 (889)
T KOG4658|consen 549 TLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNL 625 (889)
T ss_pred eEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheecc
Confidence 999999863 33334 288899999999999999999999999999999999988 33444554443 344444433
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=5.1e-38 Score=317.35 Aligned_cols=254 Identities=32% Similarity=0.511 Sum_probs=201.1
Q ss_pred chhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHH--HhhcccceEEeeechhcccccChHHHHHHHHHHHhC
Q 042374 62 LNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQ--ISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLG 139 (714)
Q Consensus 62 r~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (714)
||.++++|.+.|.....+.++|+|+||||+||||||++++++ ++.+|+.++|+. .+.......++++++.++..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~----~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS----LSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE----EES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc----cccccccccccccccccccc
Confidence 789999999999876678999999999999999999999987 889999999998 56666668888998888544
Q ss_pred CCCC--cccchhhH-HHHHHHhcCCcEEEEEeCCCCCHHHHHHHhcCCCCCCCCcEEEEEcCChhHHHhcCC-CeEEecC
Q 042374 140 DKNL--KIGTLVIH-QNIRKRLRQVKMLIVLDAVHDGFTQLESLAGELDKFTTGSRIIITTRDKQVLDKCGV-NYVYEVE 215 (714)
Q Consensus 140 ~~~~--~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~v~~~~~~-~~~~~l~ 215 (714)
.... ...+.+.. +.+.+.+.++++|+||||||+. ..|+.+...++....|++||||||+..++..++. ...++++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~-~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE-EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE 155 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH-HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc-cccccccccccccccccccccccccccccccccccccccccc
Confidence 4221 23334445 8899999999999999999998 7888888877777789999999999988876644 6789999
Q ss_pred CCCHHHHHHHHHHhhhhcC-CCChhHHHHHHHHHHHhcCCChhhHHhhhhhccC-CHHHHHHHHHHHhcCC------Cch
Q 042374 216 GLEHNKAFELFYRKAFRQN-NYPPDFLGLSLEVVHYARNNPLALEVLGSSLYQK-SKQQWEDRLHNLRLIS------EPN 287 (714)
Q Consensus 216 ~L~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~-~~~~w~~~l~~l~~~~------~~~ 287 (714)
+|+.+|+++||.+.++... ...+...+.+++|+++|+|+|||+.++|++++.+ +..+|+.+++++.... ...
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 235 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRS 235 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999987655 2334445789999999999999999999999644 6788999998876543 356
Q ss_pred HHHHHHHhhhcCchhhHhhhhhccccccCcccc
Q 042374 288 IYKVLKISYDELNSKEKEMFLDIACFFKGEDLD 320 (714)
Q Consensus 288 ~~~~l~ls~~~L~~~~k~~~~~~~~fp~~~~~~ 320 (714)
+..++.+||+.|+++.|.||.||++||.++.++
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~ 268 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEGVPIP 268 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EE
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCCceEC
Confidence 899999999999999999999999999998887
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=1.6e-28 Score=289.99 Aligned_cols=329 Identities=21% Similarity=0.216 Sum_probs=218.4
Q ss_pred CceEEEecCCCCC-CCCCCC-CCCCcccccCCCCCCccccCCc--ccccccEEeccCCccccccC-CCCCCCCCcEEecC
Q 042374 384 ELRYLHWHEYPLK-TLPFDF-EPENLTELSLPYSKVEQSWGGK--RLLSSKFIDLSHSQYLIRMP-DLSEAPNLERINLL 458 (714)
Q Consensus 384 ~l~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~i~~~~~~~--~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~ 458 (714)
.+++|++++|.+. .+|..+ .+.+|++|++++|.+....+.. .+++|++|++++|.+....| .+..+++|++|+++
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 5666666666654 334433 5566666666666665433322 26666666666666655555 46666667777776
Q ss_pred CCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCC-CCCCcEEEeCCCcCCCccccc---ccccceEecccccce-Ee
Q 042374 459 NCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLH-FVCPVTINCGGCVNLTEFPQI---SGSVTKLILWETAIK-EV 533 (714)
Q Consensus 459 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~---~~~L~~L~l~~~~i~-~l 533 (714)
+|.....+|..++++++|++|++++|.....+|..+. +.+|+.|+++++.....+|.. ..+|++|++++|.+. .+
T Consensus 221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 300 (968)
T PLN00113 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC
Confidence 6665556666666777777777766665555665554 666777777665544444422 346667777777765 45
Q ss_pred ccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCcccc-ccCccccC--
Q 042374 534 PSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIR-ELPSTFEK-- 610 (714)
Q Consensus 534 p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~~~~~~~~-- 610 (714)
|..+..+++|+.|++++|.+.+..|..+..+++|+.|++.+|.+.+.+|..++.+++|+.|++++|.+. .+|..+..
T Consensus 301 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~ 380 (968)
T PLN00113 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG 380 (968)
T ss_pred ChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC
Confidence 666777777777777777777777777777777777777777777677777777778888888777765 33433322
Q ss_pred --------CCCCcccCCCccCCCCCCCceeccCCCcCc-----CCCCCCCCEEECCCCCCc-ccchhhccCCCCCeeccc
Q 042374 611 --------GEGTESQLPSSVADTNDLEGLSLYLRNYAL-----NGCLSSLEYLDLSGNDFE-SLPASIKQLSRLRKLHLC 676 (714)
Q Consensus 611 --------~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-----~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~l~ 676 (714)
.+...+.+|..+..+++|+.|++.+|.+.. +..+++|+.|++++|.++ .+|..+..+++|+.|+++
T Consensus 381 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 460 (968)
T PLN00113 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460 (968)
T ss_pred CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECc
Confidence 122234566667777888888888887653 556778888888888877 456666778888888888
Q ss_pred cCccccccCCC--cCcccEeecccCcccccccCccccc
Q 042374 677 YCDKLQSIPEL--PLSLKWLDASNCERLQTFPEISSYL 712 (714)
Q Consensus 677 ~~~~~~~lp~~--~~~L~~L~l~~c~~l~~lp~~~~~~ 712 (714)
+|.+.+.+|.. .++|+.|++++|.....+|..+.++
T Consensus 461 ~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l 498 (968)
T PLN00113 461 RNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSL 498 (968)
T ss_pred CceeeeecCcccccccceEEECcCCccCCccChhhhhh
Confidence 88887777763 3678888888887666777665443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=4.8e-28 Score=285.99 Aligned_cols=327 Identities=21% Similarity=0.216 Sum_probs=200.5
Q ss_pred CceEEEecCCCCC-CCCCCC-CCCCcccccCCCCCCccccCCc--ccccccEEeccCCccccccC-CCCCCCCCcEEecC
Q 042374 384 ELRYLHWHEYPLK-TLPFDF-EPENLTELSLPYSKVEQSWGGK--RLLSSKFIDLSHSQYLIRMP-DLSEAPNLERINLL 458 (714)
Q Consensus 384 ~l~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~i~~~~~~~--~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~ 458 (714)
++++|++++|.+. .+|..+ .+.+|++|++++|.+....+.. .+.+|++|++++|.+....| .++.+++|++|+++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence 5667777666654 444444 5666777777777665433322 26677777777776665555 46667777777777
Q ss_pred CCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCC-CCCCcEEEeCCCcCCCcccc---cccccceEecccccce-Ee
Q 042374 459 NCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLH-FVCPVTINCGGCVNLTEFPQ---ISGSVTKLILWETAIK-EV 533 (714)
Q Consensus 459 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~~~i~-~l 533 (714)
+|.....+|..++++++|++|++++|.....+|..+. +.+|+.|++++|.....+|. ...+|+.|++.+|.+. .+
T Consensus 245 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 324 (968)
T PLN00113 245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324 (968)
T ss_pred CceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC
Confidence 7665556666677777777777776665555665554 66777777766654444443 2345666777666665 44
Q ss_pred ccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCcccc-ccCccccC--
Q 042374 534 PSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIR-ELPSTFEK-- 610 (714)
Q Consensus 534 p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~~~~~~~~-- 610 (714)
|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+. .+|..+..
T Consensus 325 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 404 (968)
T PLN00113 325 PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACR 404 (968)
T ss_pred ChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCC
Confidence 555666777777777777666666666667777777777776666566666666666666666666554 22322111
Q ss_pred --------CCCCcccCCCccCCCCCCCceeccCCCcCc-----CCCCCCCCEEECCCCCCc-ccchhhccCCCCCeeccc
Q 042374 611 --------GEGTESQLPSSVADTNDLEGLSLYLRNYAL-----NGCLSSLEYLDLSGNDFE-SLPASIKQLSRLRKLHLC 676 (714)
Q Consensus 611 --------~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-----~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~l~ 676 (714)
.+...+.+|..+..+++|+.|++++|.+.. +..+++|+.|++++|++. .+|..+ ..++|+.|+++
T Consensus 405 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls 483 (968)
T PLN00113 405 SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLS 483 (968)
T ss_pred CCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECc
Confidence 111223455556667777777777776654 345667777777777665 344433 34667777777
Q ss_pred cCccccccCCC---cCcccEeecccCcccccccCcccc
Q 042374 677 YCDKLQSIPEL---PLSLKWLDASNCERLQTFPEISSY 711 (714)
Q Consensus 677 ~~~~~~~lp~~---~~~L~~L~l~~c~~l~~lp~~~~~ 711 (714)
+|.+.+.+|.. +++|+.|++++|.....+|+.+.+
T Consensus 484 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 521 (968)
T PLN00113 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS 521 (968)
T ss_pred CCccCCccChhhhhhhccCEEECcCCcceeeCChHHcC
Confidence 77766666642 356677777777555566655443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=1.1e-27 Score=239.17 Aligned_cols=353 Identities=17% Similarity=0.133 Sum_probs=268.0
Q ss_pred cccCCCceeeeCHHHHhcccCceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCCCCCCC--CCCCcc
Q 042374 331 LNLSKINDLHLSPQAFAKMSNLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTLPFDF--EPENLT 408 (714)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~--~~~~L~ 408 (714)
++++...--++....|.++++|+.+++..|.+..++ .+.....++..|++.+|.+..+.... .+..|+
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP----------~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIP----------RFGHESGHLEKLDLRHNLISSVTSEELSALPALR 152 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeeccchhhhcc----------cccccccceeEEeeeccccccccHHHHHhHhhhh
Confidence 455555555677888999999999999888765432 22233346889999999988886554 567899
Q ss_pred cccCCCCCCccccCCcc--cccccEEeccCCccccccC-CCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCC
Q 042374 409 ELSLPYSKVEQSWGGKR--LLSSKFIDLSHSQYLIRMP-DLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCK 485 (714)
Q Consensus 409 ~L~l~~~~i~~~~~~~~--~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 485 (714)
+|+|+.|.|+.++...+ -.++++|+|++|.++.... .|..+.+|-+|.|+.|+...-.+..|.+|++|+.|+|..|.
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence 99999999999887766 5789999999999877655 58888899999999987655445778889999999998864
Q ss_pred CCCcc-C-CCCCCCCCcEEEeCCCcCCCccc----ccccccceEecccccceEeccc-cCCCCCCcEEecCCCCCCcccc
Q 042374 486 SLRSF-P-SNLHFVCPVTINCGGCVNLTEFP----QISGSVTKLILWETAIKEVPSS-VGCLTNLKVLSLSQCPRLKRIS 558 (714)
Q Consensus 486 ~~~~~-~-~~~~~~~L~~L~l~~~~~l~~~~----~~~~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~ 558 (714)
. +.+ - ..-++.+|+.|.+... .+..+. -...++++|+|..|++..+..+ +.+++.|+.|++++|.+...-+
T Consensus 233 i-rive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~ 310 (873)
T KOG4194|consen 233 I-RIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI 310 (873)
T ss_pred e-eeehhhhhcCchhhhhhhhhhc-CcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence 3 322 1 2223777777776542 222222 2345788899999988888655 6788899999999988877777
Q ss_pred ccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCc
Q 042374 559 TSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNY 638 (714)
Q Consensus 559 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 638 (714)
+++..+++|+.|+++.|.+...-+..|..+..|+.|.|++|.+..+.... +..+.+|+.|+|.+|.+
T Consensus 311 d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a-------------f~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGA-------------FVGLSSLHKLDLRSNEL 377 (873)
T ss_pred chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhH-------------HHHhhhhhhhcCcCCeE
Confidence 77888889999999988877766778888889999999999888776665 77889999999999987
Q ss_pred Cc--------CCCCCCCCEEECCCCCCcccch-hhccCCCCCeeccccCccccccCCCc--CcccEeecc------cCcc
Q 042374 639 AL--------NGCLSSLEYLDLSGNDFESLPA-SIKQLSRLRKLHLCYCDKLQSIPELP--LSLKWLDAS------NCER 701 (714)
Q Consensus 639 ~~--------~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~~~~~~~lp~~~--~~L~~L~l~------~c~~ 701 (714)
.. +..++.|+.|.+.||++..+|. .+.++++|+.|+|.+|.+-..-|..+ -.|++|.+. +| .
T Consensus 378 s~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDC-q 456 (873)
T KOG4194|consen 378 SWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDC-Q 456 (873)
T ss_pred EEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEec-c
Confidence 55 6679999999999999999886 68889999999999998765555432 255655543 44 3
Q ss_pred cccccCcc
Q 042374 702 LQTFPEIS 709 (714)
Q Consensus 702 l~~lp~~~ 709 (714)
|+.+++|+
T Consensus 457 l~Wl~qWl 464 (873)
T KOG4194|consen 457 LKWLAQWL 464 (873)
T ss_pred HHHHHHHH
Confidence 45555544
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=7.1e-27 Score=233.41 Aligned_cols=336 Identities=19% Similarity=0.133 Sum_probs=271.3
Q ss_pred eEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCCCCCCC-CCCCcccccCCCCCCccccCCcc--cccc
Q 042374 353 RLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTLPFDF-EPENLTELSLPYSKVEQSWGGKR--LLSS 429 (714)
Q Consensus 353 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~~~~~~~--~~~L 429 (714)
+.|++++|.+..+.. .++..+| +++.+.+..|.+..+|... ...+++.|+|.+|.|+.+..... ++.|
T Consensus 81 ~~LdlsnNkl~~id~--------~~f~nl~-nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~al 151 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDF--------EFFYNLP-NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPAL 151 (873)
T ss_pred eeeeccccccccCcH--------HHHhcCC-cceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhh
Confidence 458899987665322 2234455 8899999999999999887 44679999999999998876544 9999
Q ss_pred cEEeccCCccccccC-CCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCC-CCCCcEEEeCCC
Q 042374 430 KFIDLSHSQYLIRMP-DLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLH-FVCPVTINCGGC 507 (714)
Q Consensus 430 ~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~ 507 (714)
++|||+.|.+..... .|..-.++++|+|++|++...-...|.++.+|..|.|+.|...+--+..++ +.+|+.|++...
T Consensus 152 rslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 152 RSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence 999999998876543 688888999999999987665557788999999999999665444445555 899999988763
Q ss_pred cCCCcc----cccccccceEecccccceEeccc-cCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCc
Q 042374 508 VNLTEF----PQISGSVTKLILWETAIKEVPSS-VGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFP 582 (714)
Q Consensus 508 ~~l~~~----~~~~~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 582 (714)
.++.. ....++|+.|.+.+|.|..+.++ |..|.++++|+|..|.+...-..++.++++|+.|+++.|.+....+
T Consensus 232 -~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~ 310 (873)
T KOG4194|consen 232 -RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI 310 (873)
T ss_pred -ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence 23222 24567899999999999999877 7899999999999998877777789999999999999999887778
Q ss_pred hhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc-----CCCCCCCCEEECCCCCC
Q 042374 583 EILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL-----NGCLSSLEYLDLSGNDF 657 (714)
Q Consensus 583 ~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-----~~~l~~L~~L~L~~n~l 657 (714)
......++|+.|+|++|.|+.++..- +..+..|+.|.|+.|.+.. +..+.+|++|+|++|.+
T Consensus 311 d~WsftqkL~~LdLs~N~i~~l~~~s-------------f~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSSNRITRLDEGS-------------FRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL 377 (873)
T ss_pred chhhhcccceeEeccccccccCChhH-------------HHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence 88888999999999999999988764 7888999999999999876 66789999999999988
Q ss_pred cc-c---chhhccCCCCCeeccccCccccccCC----CcCcccEeecccCcccccccCccccc
Q 042374 658 ES-L---PASIKQLSRLRKLHLCYCDKLQSIPE----LPLSLKWLDASNCERLQTFPEISSYL 712 (714)
Q Consensus 658 ~~-l---p~~l~~l~~L~~L~l~~~~~~~~lp~----~~~~L~~L~l~~c~~l~~lp~~~~~~ 712 (714)
+- + ...+.++++|+.|.+.+|+ ++++|. .+++|++|++.+|+.-+-=|+++++|
T Consensus 378 s~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 378 SWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred EEEEecchhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCCcceeecccccccc
Confidence 72 2 3346789999999999997 567774 46889999999986444447777765
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=1.6e-25 Score=225.31 Aligned_cols=335 Identities=21% Similarity=0.226 Sum_probs=252.4
Q ss_pred cceeeeecccCCCceeeeCHHHHhcccCceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCC--CCCCC
Q 042374 324 DNIEGIFLNLSKINDLHLSPQAFAKMSNLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLK--TLPFD 401 (714)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~--~~~~~ 401 (714)
..+.|+-++..++.. -++-+..+.+|..|.+.+|++.. ++..+.++| .+|.+.+.+|+++ .+|..
T Consensus 32 t~~~WLkLnrt~L~~---vPeEL~~lqkLEHLs~~HN~L~~---------vhGELs~Lp-~LRsv~~R~N~LKnsGiP~d 98 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQ---VPEELSRLQKLEHLSMAHNQLIS---------VHGELSDLP-RLRSVIVRDNNLKNSGIPTD 98 (1255)
T ss_pred hheeEEEechhhhhh---ChHHHHHHhhhhhhhhhhhhhHh---------hhhhhccch-hhHHHhhhccccccCCCCch
Confidence 334555444444332 26778888899999999886543 345566666 7888888888876 35544
Q ss_pred -CCCCCcccccCCCCCCccccCCcc-cccccEEeccCCccccccCC-CCCCCCCcEEecCCCCCCccCCccccCCCCCCE
Q 042374 402 -FEPENLTELSLPYSKVEQSWGGKR-LLSSKFIDLSHSQYLIRMPD-LSEAPNLERINLLNCTNLVSVPSSIQNFNHLSM 478 (714)
Q Consensus 402 -~~~~~L~~L~l~~~~i~~~~~~~~-~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 478 (714)
|.++.|+.|++++|+++..+.... ..++-+|+||+|.+...+.. |.++..|-+|+|++|+ +..+|+.+..+.+|++
T Consensus 99 iF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQT 177 (1255)
T ss_pred hcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhh
Confidence 488999999999999999887665 88899999999998766553 7888999999999974 7789999999999999
Q ss_pred EecCCCCCCC-ccCCCCCCCCCcEEEeCCCcC-CCcccc---cccccceEecccccceEeccccCCCCCCcEEecCCCCC
Q 042374 479 LCFEGCKSLR-SFPSNLHFVCPVTINCGGCVN-LTEFPQ---ISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPR 553 (714)
Q Consensus 479 L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~-l~~~~~---~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~ 553 (714)
|+|++|.... .+-..-.+++|+.|.+++... +.++|. ...||..++++.|++..+|..+.++++|+.|+|++|.+
T Consensus 178 L~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 178 LKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI 257 (1255)
T ss_pred hhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce
Confidence 9999875422 111122356777777776532 234442 34477788888888888888888888888888888875
Q ss_pred CccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceec
Q 042374 554 LKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSL 633 (714)
Q Consensus 554 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l 633 (714)
+.+.-..+...+|++|+++.|. +..+|..+.++++|+.|.+.+|.+. ...+|+.++.+.+|+.+..
T Consensus 258 -teL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~------------FeGiPSGIGKL~~Levf~a 323 (1255)
T KOG0444|consen 258 -TELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLT------------FEGIPSGIGKLIQLEVFHA 323 (1255)
T ss_pred -eeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCccc------------ccCCccchhhhhhhHHHHh
Confidence 4455566677888888888876 4468888888888888888888764 1234555888888998888
Q ss_pred cCCCcCc----CCCCCCCCEEECCCCCCcccchhhccCCCCCeeccccCccccccCC
Q 042374 634 YLRNYAL----NGCLSSLEYLDLSGNDFESLPASIKQLSRLRKLHLCYCDKLQSIPE 686 (714)
Q Consensus 634 ~~~~~~~----~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~ 686 (714)
.+|.+.. +..++.|+.|.|++|++-.+|..+--++.|+.|++..|+.+---|.
T Consensus 324 anN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 324 ANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 8888755 4567788999999999889998888889999999999887755553
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=1.3e-25 Score=225.87 Aligned_cols=334 Identities=23% Similarity=0.261 Sum_probs=266.0
Q ss_pred HHHHhcccCceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCCCCCCC-CCCCcccccCCCCCCcc--
Q 042374 343 PQAFAKMSNLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTLPFDF-EPENLTELSLPYSKVEQ-- 419 (714)
Q Consensus 343 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~-- 419 (714)
+.....|..++.|.+...++..+ ++.+..+. ++.+|.+.+|++..+.... .++.||.+.+..|+++.
T Consensus 25 P~~v~qMt~~~WLkLnrt~L~~v---------PeEL~~lq-kLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsG 94 (1255)
T KOG0444|consen 25 PHDVEQMTQMTWLKLNRTKLEQV---------PEELSRLQ-KLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSG 94 (1255)
T ss_pred chhHHHhhheeEEEechhhhhhC---------hHHHHHHh-hhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCC
Confidence 45567788888888876654332 22223332 6778889999988876665 78899999999998864
Q ss_pred ccCCcc-cccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCC-ccccCCCCCCEEecCCCCCCCccCCCCC-C
Q 042374 420 SWGGKR-LLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVP-SSIQNFNHLSMLCFEGCKSLRSFPSNLH-F 496 (714)
Q Consensus 420 ~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~ 496 (714)
++...+ +..|.+||||+|++...+..+...+++-+|+|++|+ +..+| +-+.+++.|-+|+|+.| .+..+|+.+. +
T Consensus 95 iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL 172 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRL 172 (1255)
T ss_pred CCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHH
Confidence 444444 899999999999876555578888999999999986 45566 55778999999999885 5667777776 9
Q ss_pred CCCcEEEeCCCcCC----CcccccccccceEecccccce--EeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEE
Q 042374 497 VCPVTINCGGCVNL----TEFPQISGSVTKLILWETAIK--EVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNL 570 (714)
Q Consensus 497 ~~L~~L~l~~~~~l----~~~~~~~~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 570 (714)
.+|++|.+++.+-. +.+| ...+|+.|+++++.-+ .+|.++..+.+|..++++.|. +..+|+.+.++++|+.|
T Consensus 173 ~~LqtL~Ls~NPL~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrL 250 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRL 250 (1255)
T ss_pred hhhhhhhcCCChhhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhhee
Confidence 99999999886432 2222 2346778888887644 789999999999999999875 56788889999999999
Q ss_pred EecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc------CCCC
Q 042374 571 YLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL------NGCL 644 (714)
Q Consensus 571 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~------~~~l 644 (714)
++++|.+.+ +....+...+|++|++|.|.++.+|.. +..++.|+.|.+.+|.+.. +|.+
T Consensus 251 NLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~a--------------vcKL~kL~kLy~n~NkL~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 251 NLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPDA--------------VCKLTKLTKLYANNNKLTFEGIPSGIGKL 315 (1255)
T ss_pred ccCcCceee-eeccHHHHhhhhhhccccchhccchHH--------------HhhhHHHHHHHhccCcccccCCccchhhh
Confidence 999987654 445566778899999999999887776 7899999999999998765 6788
Q ss_pred CCCCEEECCCCCCcccchhhccCCCCCeeccccCccccccCC---CcCcccEeecccCccccccc
Q 042374 645 SSLEYLDLSGNDFESLPASIKQLSRLRKLHLCYCDKLQSIPE---LPLSLKWLDASNCERLQTFP 706 (714)
Q Consensus 645 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~---~~~~L~~L~l~~c~~l~~lp 706 (714)
.+|+.+..++|++.-+|..+..|..|+.|.|+.|.+ -.+|+ +++.|+.|++..+|+|..-|
T Consensus 316 ~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrL-iTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 316 IQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRL-ITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhHHHHhhccccccCchhhhhhHHHHHhcccccce-eechhhhhhcCCcceeeccCCcCccCCC
Confidence 999999999999999999999999999999999875 45665 57899999999999998765
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=6.3e-25 Score=210.18 Aligned_cols=251 Identities=20% Similarity=0.247 Sum_probs=170.1
Q ss_pred HHHHhcccCceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCCCCCCC-CCCCcccccCCCCCCcccc
Q 042374 343 PQAFAKMSNLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTLPFDF-EPENLTELSLPYSKVEQSW 421 (714)
Q Consensus 343 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~~~ 421 (714)
......+..+..+.+++|.....+ ..+..+- .+..++.+++.+..+|... ....++.++.++|.+..++
T Consensus 61 ~~dl~nL~~l~vl~~~~n~l~~lp---------~aig~l~-~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~ 130 (565)
T KOG0472|consen 61 REDLKNLACLTVLNVHDNKLSQLP---------AAIGELE-ALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELP 130 (565)
T ss_pred cHhhhcccceeEEEeccchhhhCC---------HHHHHHH-HHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecC
Confidence 344556666666666666543321 1111111 3345566666666666555 5666777777777777766
Q ss_pred CCcc-cccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCC-CCCC
Q 042374 422 GGKR-LLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLH-FVCP 499 (714)
Q Consensus 422 ~~~~-~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L 499 (714)
+... +..+..++..+|++...++++..+..|..+++.+|. ...+|+..-+++.|++|+... +.++.+|..++ +.+|
T Consensus 131 ~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L 208 (565)
T KOG0472|consen 131 DSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESL 208 (565)
T ss_pred chHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhh
Confidence 6555 667777777777766666666666677777777754 345555555577777777765 45566666665 7777
Q ss_pred cEEEeCCCcCCCccccccc--ccceEecccccceEeccccC-CCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCC
Q 042374 500 VTINCGGCVNLTEFPQISG--SVTKLILWETAIKEVPSSVG-CLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCF 576 (714)
Q Consensus 500 ~~L~l~~~~~l~~~~~~~~--~L~~L~l~~~~i~~lp~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 576 (714)
+.|++.. +.+..+|++.+ .|++|++..|.|+.+|...+ .++++..||+.+|+ ..+.|..++-+.+|+.|++++|.
T Consensus 209 ~~LyL~~-Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 209 ELLYLRR-NKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNND 286 (565)
T ss_pred HHHHhhh-cccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCc
Confidence 7777765 44556665543 57788888888888888754 88899999999986 57788889999999999998886
Q ss_pred CCCCCchhhhccccccccccCCccccccCcccc
Q 042374 577 DLENFPEILEKMEYLNYNALGRTKIRELPSTFE 609 (714)
Q Consensus 577 ~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~ 609 (714)
+. .+|..++++ +|+.|-+.+|.+..+..++.
T Consensus 287 is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii 317 (565)
T KOG0472|consen 287 IS-SLPYSLGNL-HLKFLALEGNPLRTIRREII 317 (565)
T ss_pred cc-cCCcccccc-eeeehhhcCCchHHHHHHHH
Confidence 54 578889998 89999999988775554433
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=2.2e-20 Score=220.76 Aligned_cols=307 Identities=24% Similarity=0.369 Sum_probs=241.0
Q ss_pred Hhcc-cCceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCCCCCCC-CCCCcccccCCCCC-CccccC
Q 042374 346 FAKM-SNLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTLPFDF-EPENLTELSLPYSK-VEQSWG 422 (714)
Q Consensus 346 ~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~-i~~~~~ 422 (714)
|..+ .+|+.|.+..+..... +..+ -+.+++.|++.++.+..++... .+.+|+.|+++++. +..++.
T Consensus 584 ~~~lp~~Lr~L~~~~~~l~~l---------P~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ 652 (1153)
T PLN03210 584 FDYLPPKLRLLRWDKYPLRCM---------PSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD 652 (1153)
T ss_pred hhhcCcccEEEEecCCCCCCC---------CCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc
Confidence 4444 4688888877654332 2222 2468899999999999887766 78999999999764 677776
Q ss_pred CcccccccEEeccCCccccccC-CCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCcE
Q 042374 423 GKRLLSSKFIDLSHSQYLIRMP-DLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVT 501 (714)
Q Consensus 423 ~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 501 (714)
...+++|+.|++++|.....+| .+..+++|++|++++|..+..+|..+ ++++|++|++++|..+..+|.. ..+|+.
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~ 729 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISW 729 (1153)
T ss_pred cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCe
Confidence 6669999999999998777777 58999999999999999999999766 8999999999999888887754 468899
Q ss_pred EEeCCCcCCCccccc--ccccceEecccccceEeccc--------cCCCCCCcEEecCCCCCCccccccccCCCCCCEEE
Q 042374 502 INCGGCVNLTEFPQI--SGSVTKLILWETAIKEVPSS--------VGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLY 571 (714)
Q Consensus 502 L~l~~~~~l~~~~~~--~~~L~~L~l~~~~i~~lp~~--------~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 571 (714)
|++.++. ++.+|.. ..+|++|.+.++....++.. ...+++|+.|++++|.....+|..++++++|+.|+
T Consensus 730 L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~ 808 (1153)
T PLN03210 730 LDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLE 808 (1153)
T ss_pred eecCCCc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEE
Confidence 9998764 6666643 35777787776443333221 23357899999999988888999999999999999
Q ss_pred ecCCCCCCCCchhhhccccccccccCCc-cccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc----CCCCCC
Q 042374 572 LIQCFDLENFPEILEKMEYLNYNALGRT-KIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL----NGCLSS 646 (714)
Q Consensus 572 l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~----~~~l~~ 646 (714)
+.+|...+.+|... ++++|+.|++++| .+..+|. ...+|+.|+|++|.+.. ++.+++
T Consensus 809 Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~-----------------~~~nL~~L~Ls~n~i~~iP~si~~l~~ 870 (1153)
T PLN03210 809 IENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD-----------------ISTNISDLNLSRTGIEEVPWWIEKFSN 870 (1153)
T ss_pred CCCCCCcCeeCCCC-CccccCEEECCCCCccccccc-----------------cccccCEeECCCCCCccChHHHhcCCC
Confidence 99998888888765 7889999999985 4433332 13678899999998876 567899
Q ss_pred CCEEECCCC-CCcccchhhccCCCCCeeccccCccccccC
Q 042374 647 LEYLDLSGN-DFESLPASIKQLSRLRKLHLCYCDKLQSIP 685 (714)
Q Consensus 647 L~~L~L~~n-~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp 685 (714)
|+.|+|++| +++.+|..+..+++|+.+++++|..+..++
T Consensus 871 L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 871 LSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 999999985 688899888899999999999998776443
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=3.2e-24 Score=205.32 Aligned_cols=217 Identities=19% Similarity=0.214 Sum_probs=113.8
Q ss_pred HHHHhcccCceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCCCCCCC-CCCCcccccCCCCCCcccc
Q 042374 343 PQAFAKMSNLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTLPFDF-EPENLTELSLPYSKVEQSW 421 (714)
Q Consensus 343 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~~~ 421 (714)
+.++.++..+..++.++|+.... +..+...+ ++..++++.+.+..++..+ .+..+..++..+|++..++
T Consensus 84 p~aig~l~~l~~l~vs~n~ls~l---------p~~i~s~~-~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp 153 (565)
T KOG0472|consen 84 PAAIGELEALKSLNVSHNKLSEL---------PEQIGSLI-SLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLP 153 (565)
T ss_pred CHHHHHHHHHHHhhcccchHhhc---------cHHHhhhh-hhhhhhccccceeecCchHHHHhhhhhhhccccccccCc
Confidence 55667777777777777754432 22222222 4556666666666665554 5566666666777776666
Q ss_pred CCcc-cccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCc
Q 042374 422 GGKR-LLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPV 500 (714)
Q Consensus 422 ~~~~-~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~ 500 (714)
++.. +..|..+++.+|++....|+.-.++.|++|+...| .++.+|+.++.+.+|..|++..| .+..+|..-++..|.
T Consensus 154 ~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~ 231 (565)
T KOG0472|consen 154 EDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRN-KIRFLPEFPGCSLLK 231 (565)
T ss_pred hHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhc-ccccCCCCCccHHHH
Confidence 6554 66666666666666655555444666666666554 35566666666666666666663 344455333344444
Q ss_pred EEEeCCCcCCCcccc----cccccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecC
Q 042374 501 TINCGGCVNLTEFPQ----ISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQ 574 (714)
Q Consensus 501 ~L~l~~~~~l~~~~~----~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 574 (714)
.|.++. +.++.+|. ..+++..|++..|+++++|..++.+.+|..||+++|.+ ..+|..++++ +|+.|-+.|
T Consensus 232 Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i-s~Lp~sLgnl-hL~~L~leG 306 (565)
T KOG0472|consen 232 ELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI-SSLPYSLGNL-HLKFLALEG 306 (565)
T ss_pred HHHhcc-cHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcc-ccCCcccccc-eeeehhhcC
Confidence 444333 12222221 12233344444444444444444444444444444332 2333344444 444444433
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=3.7e-22 Score=210.73 Aligned_cols=345 Identities=21% Similarity=0.234 Sum_probs=217.0
Q ss_pred HHHHhcccCceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCCCCCCC-CCCCcccccCCCCCCcccc
Q 042374 343 PQAFAKMSNLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTLPFDF-EPENLTELSLPYSKVEQSW 421 (714)
Q Consensus 343 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~~~ 421 (714)
-++..+..+|+.|++++|.....+.. +..++ .++.|.++.|-+..+|... .+++|++|.|.+|.+..++
T Consensus 38 l~~~~~~v~L~~l~lsnn~~~~fp~~---------it~l~-~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP 107 (1081)
T KOG0618|consen 38 LEFVEKRVKLKSLDLSNNQISSFPIQ---------ITLLS-HLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLP 107 (1081)
T ss_pred hHHhhheeeeEEeeccccccccCCch---------hhhHH-HHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCc
Confidence 34445566688888888875543322 22222 5667777777777777655 6777888888888777777
Q ss_pred CCcc-cccccEEeccCCccccccCCCCCCCC-------------------CcEEecCCCCCCccCCccccCCCCCCEEec
Q 042374 422 GGKR-LLSSKFIDLSHSQYLIRMPDLSEAPN-------------------LERINLLNCTNLVSVPSSIQNFNHLSMLCF 481 (714)
Q Consensus 422 ~~~~-~~~L~~L~l~~~~~~~~~~~~~~l~~-------------------L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l 481 (714)
.... +.+|++|++++|++...++-+..+.. ++.+++..+.....++..+.++.+ .|+|
T Consensus 108 ~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldL 185 (1081)
T KOG0618|consen 108 ASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDL 185 (1081)
T ss_pred hhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeec
Confidence 6554 77888888888876544433333333 334444444444444555555555 5677
Q ss_pred CCCCCCCccCC-------------------CCCCCCCcEEEeCCCcCCCccccc-ccccceEecccccceEeccccCCCC
Q 042374 482 EGCKSLRSFPS-------------------NLHFVCPVTINCGGCVNLTEFPQI-SGSVTKLILWETAIKEVPSSVGCLT 541 (714)
Q Consensus 482 ~~~~~~~~~~~-------------------~~~~~~L~~L~l~~~~~l~~~~~~-~~~L~~L~l~~~~i~~lp~~~~~l~ 541 (714)
++|... .+.. .+...+++.|+..+|...+..... +.++++++++++.+..+|.+++.+.
T Consensus 186 r~N~~~-~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~ 264 (1081)
T KOG0618|consen 186 RYNEME-VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACA 264 (1081)
T ss_pred ccchhh-hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcc
Confidence 666544 1110 011344555555555554433333 4478899999999999998899999
Q ss_pred CCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCC----------
Q 042374 542 NLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKG---------- 611 (714)
Q Consensus 542 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~---------- 611 (714)
+|+.+++.+|.+ ..+|..+....+|+.|.+..|. ...+|...+++++|++|+|..|+|..+|..+..-
T Consensus 265 nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~ 342 (1081)
T KOG0618|consen 265 NLEALNANHNRL-VALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNV 342 (1081)
T ss_pred cceEecccchhH-HhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhh
Confidence 999999999876 6677777777777777777765 3456677777788888888888777777643320
Q ss_pred --------------------------CCCcccCCCccCCCCCCCceeccCCCcCc-----CCCCCCCCEEECCCCCCccc
Q 042374 612 --------------------------EGTESQLPSSVADTNDLEGLSLYLRNYAL-----NGCLSSLEYLDLSGNDFESL 660 (714)
Q Consensus 612 --------------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~l 660 (714)
+......-..+.++.+|+.|+|++|++.. +.++..|+.|+||||+++.+
T Consensus 343 s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L 422 (1081)
T KOG0618|consen 343 SSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL 422 (1081)
T ss_pred hhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh
Confidence 11112333336677778888888887665 44567777777777777766
Q ss_pred chhhccCCCCC----------------------eeccccCcccc-ccCC-Cc-CcccEeecccCccc
Q 042374 661 PASIKQLSRLR----------------------KLHLCYCDKLQ-SIPE-LP-LSLKWLDASNCERL 702 (714)
Q Consensus 661 p~~l~~l~~L~----------------------~L~l~~~~~~~-~lp~-~~-~~L~~L~l~~c~~l 702 (714)
|..+.+++.|+ .+|++.|.+.. .+|. .| ++|++|++++|+.+
T Consensus 423 p~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 423 PDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 65544444444 44444443321 1121 24 78888888888754
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=6e-19 Score=192.95 Aligned_cols=240 Identities=18% Similarity=0.166 Sum_probs=145.3
Q ss_pred CceEEEecCCCCCCCCCCCCCCCcccccCCCCCCccccCCcccccccEEeccCCccccccCCCCCCCCCcEEecCCCCCC
Q 042374 384 ELRYLHWHEYPLKTLPFDFEPENLTELSLPYSKVEQSWGGKRLLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNL 463 (714)
Q Consensus 384 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 463 (714)
+++.|.+.+|.++.+|.. +++|++|++++|+++.++. ..++|+.|++++|.+.
T Consensus 223 ~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~--lp~sL~~L~Ls~N~L~----------------------- 275 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLT----------------------- 275 (788)
T ss_pred CCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccC--cccccceeeccCCchh-----------------------
Confidence 455555555555555432 3445555555555554432 1344444555444432
Q ss_pred ccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEeccccCCCCCC
Q 042374 464 VSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSSVGCLTNL 543 (714)
Q Consensus 464 ~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L 543 (714)
.+|.. +.+|+.|++++|. ++.+|.. +.+|+.|+++++ .+..+|..+.+|+.|++.+|.++.+|.. ..+|
T Consensus 276 -~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~--p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~LP~l---p~~L 344 (788)
T PRK15387 276 -HLPAL---PSGLCKLWIFGNQ-LTSLPVL--PPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPTL---PSGL 344 (788)
T ss_pred -hhhhc---hhhcCEEECcCCc-ccccccc--ccccceeECCCC-ccccCCCCcccccccccccCcccccccc---cccc
Confidence 23321 1234444444432 2333321 234445554443 3444455555677777777777777652 2467
Q ss_pred cEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccC
Q 042374 544 KVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVA 623 (714)
Q Consensus 544 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~ 623 (714)
+.|++++|.+. .+|.. ..+|+.|++++|.+. .+|.. ..+|+.|++++|.++.+|..
T Consensus 345 q~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~l---------------- 400 (788)
T PRK15387 345 QELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVL---------------- 400 (788)
T ss_pred ceEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccCCCCc----------------
Confidence 78888877654 45543 246677777777654 35543 24678888888887766642
Q ss_pred CCCCCCceeccCCCcCcCCC-CCCCCEEECCCCCCcccchhhccCCCCCeeccccCccccccCC
Q 042374 624 DTNDLEGLSLYLRNYALNGC-LSSLEYLDLSGNDFESLPASIKQLSRLRKLHLCYCDKLQSIPE 686 (714)
Q Consensus 624 ~~~~L~~L~l~~~~~~~~~~-l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~ 686 (714)
.++|+.|++++|.+..+.. +.+|+.|++++|+++.+|..+.++++|+.|+|++|++.+..|.
T Consensus 401 -~s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 401 -PSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred -ccCCCEEEccCCcCCCCCcchhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHH
Confidence 2467888888888776433 3478999999999999999999999999999999998876654
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.72 E-value=4.7e-17 Score=178.23 Aligned_cols=261 Identities=17% Similarity=0.106 Sum_probs=196.5
Q ss_pred CCcccccCCCCCCccccCCcccccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCC
Q 042374 405 ENLTELSLPYSKVEQSWGGKRLLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGC 484 (714)
Q Consensus 405 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~ 484 (714)
.+-..|+++++.++.++... ..+|+.|++++|.+.. +|. ..++|++|++++|. +..+|.. .++|+.|++++|
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~-LP~--lp~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTS-LPA--LPPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CCCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCC-CCC--CCCCCcEEEecCCc-cCcccCc---ccccceeeccCC
Confidence 34567889999998877633 5689999999998765 443 25789999999985 4466643 468899999887
Q ss_pred CCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCC
Q 042374 485 KSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKL 564 (714)
Q Consensus 485 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 564 (714)
. +..+|.. +.+|+.|+++++ .++.+|..+++|+.|++++|.++.+|... .+|+.|++++|.+. .+|.. .
T Consensus 273 ~-L~~Lp~l--p~~L~~L~Ls~N-~Lt~LP~~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~-~LP~l---p 341 (788)
T PRK15387 273 P-LTHLPAL--PSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLT-SLPTL---P 341 (788)
T ss_pred c-hhhhhhc--hhhcCEEECcCC-ccccccccccccceeECCCCccccCCCCc---ccccccccccCccc-ccccc---c
Confidence 5 4556652 367888888885 57778877888999999999999887633 45778888888754 45532 2
Q ss_pred CCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCcCC-C
Q 042374 565 KSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYALNG-C 643 (714)
Q Consensus 565 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~ 643 (714)
.+|+.|++++|.+. .+|... .+|+.|++++|.+..+|.. ..+|+.|++++|.+..+. .
T Consensus 342 ~~Lq~LdLS~N~Ls-~LP~lp---~~L~~L~Ls~N~L~~LP~l-----------------~~~L~~LdLs~N~Lt~LP~l 400 (788)
T PRK15387 342 SGLQELSVSDNQLA-SLPTLP---SELYKLWAYNNRLTSLPAL-----------------PSGLKELIVSGNRLTSLPVL 400 (788)
T ss_pred cccceEecCCCccC-CCCCCC---cccceehhhccccccCccc-----------------ccccceEEecCCcccCCCCc
Confidence 47899999998765 456532 4678888999988877642 246899999999988744 3
Q ss_pred CCCCCEEECCCCCCcccchhhccCCCCCeeccccCccccccCC---CcCcccEeecccCcccccccCcc
Q 042374 644 LSSLEYLDLSGNDFESLPASIKQLSRLRKLHLCYCDKLQSIPE---LPLSLKWLDASNCERLQTFPEIS 709 (714)
Q Consensus 644 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~---~~~~L~~L~l~~c~~l~~lp~~~ 709 (714)
.++|+.|++++|+++.+|.. ..+|+.|++++|++. .+|. .+++|+.|++++|+.-...|..+
T Consensus 401 ~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 401 PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 46899999999999999864 357889999999864 7886 35789999999998766665544
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.70 E-value=5.4e-17 Score=179.06 Aligned_cols=204 Identities=18% Similarity=0.199 Sum_probs=100.0
Q ss_pred ceEEEecCCCCCCCCCCCCCCCcccccCCCCCCccccCCcccccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCc
Q 042374 385 LRYLHWHEYPLKTLPFDFEPENLTELSLPYSKVEQSWGGKRLLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLV 464 (714)
Q Consensus 385 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 464 (714)
...|++.++.+..+|..+ +.+++.|++++|+++.++... ..+|+.|++++|.+......+ ..+|+.|+|++|.. .
T Consensus 180 ~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L-~ 254 (754)
T PRK15370 180 KTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPATL--PDTIQEMELSINRI-T 254 (754)
T ss_pred ceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChhh--hccccEEECcCCcc-C
Confidence 345555555555555433 345666666666666554432 346666666666544222122 13566666666543 3
Q ss_pred cCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEeCCCcCCCcccc-cccccceEecccccceEeccccCCCCCC
Q 042374 465 SVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQ-ISGSVTKLILWETAIKEVPSSVGCLTNL 543 (714)
Q Consensus 465 ~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~L~~L~l~~~~i~~lp~~~~~l~~L 543 (714)
.+|..+. .+|++|++++| .+..+|..+. .+|+.|++++| .++.+|. ...+|+.|++++|.+..+|..+. ++|
T Consensus 255 ~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~-~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~--~sL 327 (754)
T PRK15370 255 ELPERLP--SALQSLDLFHN-KISCLPENLP-EELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETLP--PGL 327 (754)
T ss_pred cCChhHh--CCCCEEECcCC-ccCccccccC-CCCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCcccc--ccc
Confidence 5554443 35666666654 3334444331 34444444443 2333332 12345555555555555554332 455
Q ss_pred cEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCc
Q 042374 544 KVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPS 606 (714)
Q Consensus 544 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~ 606 (714)
+.|++++|.+. .+|..+. ++|+.|++++|.+. .+|..+. ++|++|++++|.+..+|.
T Consensus 328 ~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~LP~ 384 (754)
T PRK15370 328 KTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNLPE 384 (754)
T ss_pred eeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCCCH
Confidence 55555555432 2443332 45555555555433 2343332 345555555555554443
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.69 E-value=1.1e-18 Score=184.81 Aligned_cols=261 Identities=23% Similarity=0.244 Sum_probs=175.3
Q ss_pred CceEEEecCCCCCCCCCCCCCCCcccccCCCCCCccccCCcc-cccccEEeccCCccccccCCCCCCCCCcEEecCCCCC
Q 042374 384 ELRYLHWHEYPLKTLPFDFEPENLTELSLPYSKVEQSWGGKR-LLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTN 462 (714)
Q Consensus 384 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 462 (714)
++++|...+|.+..+-..+.+.+++++++++|+++.++.... +.+|+.++..+|++......+.....|+.|.+.+|.
T Consensus 220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne- 298 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE- 298 (1081)
T ss_pred chheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh-
Confidence 677788888887766666677888888888888888874433 888888888888874444457777788888888764
Q ss_pred CccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEeccc-cCCCC
Q 042374 463 LVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSS-VGCLT 541 (714)
Q Consensus 463 ~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~-~~~l~ 541 (714)
+..+|+..+.+++|++|+|..| .+..+|..+.. .....++.|+.+.+.+..+|.. =..+.
T Consensus 299 l~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~------------------v~~~~l~~ln~s~n~l~~lp~~~e~~~~ 359 (1081)
T KOG0618|consen 299 LEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLA------------------VLNASLNTLNVSSNKLSTLPSYEENNHA 359 (1081)
T ss_pred hhhCCCcccccceeeeeeehhc-cccccchHHHh------------------hhhHHHHHHhhhhccccccccccchhhH
Confidence 5667777777888888888774 34444442210 0011234444445555555532 12345
Q ss_pred CCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCc-hhhhccccccccccCCccccccCccccCCCCCcccCCC
Q 042374 542 NLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFP-EILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPS 620 (714)
Q Consensus 542 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~ 620 (714)
.|+.|.+.+|++....-+.+.+..+|+.|+++.|++. .+| ..+.+++.|++|++|+|+++.+|.+
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~t------------- 425 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPDT------------- 425 (1081)
T ss_pred HHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhhhhHH-------------
Confidence 6777777777776666566777777777777777643 344 4567777777777777777776655
Q ss_pred ccCCCCCCCceeccCCCcCc---CCCCCCCCEEECCCCCCc--ccchhhccCCCCCeeccccCcc
Q 042374 621 SVADTNDLEGLSLYLRNYAL---NGCLSSLEYLDLSGNDFE--SLPASIKQLSRLRKLHLCYCDK 680 (714)
Q Consensus 621 ~~~~~~~L~~L~l~~~~~~~---~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~l~~~~~ 680 (714)
+..+..|++|...+|.+.. +..++.|+.+|++.|+++ .+|..... ++|++|+++||..
T Consensus 426 -va~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 426 -VANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred -HHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 6677777777777776654 556777888888888777 33433322 7888888888774
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=3.6e-16 Score=172.58 Aligned_cols=244 Identities=14% Similarity=0.186 Sum_probs=164.0
Q ss_pred CCcccccCCCCCCccccCCcccccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCC
Q 042374 405 ENLTELSLPYSKVEQSWGGKRLLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGC 484 (714)
Q Consensus 405 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~ 484 (714)
.+...|++++++++.++... ..+|+.|++++|.+......+. .+|++|++++|. +..+|..+. .+|+.|++++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCC
Confidence 45678899999888877532 5789999999998775433433 589999999875 556776553 47999999987
Q ss_pred CCCCccCCCCCCCCCcEEEeCCCcCCCcccc-cccccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccC
Q 042374 485 KSLRSFPSNLHFVCPVTINCGGCVNLTEFPQ-ISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILK 563 (714)
Q Consensus 485 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 563 (714)
. +..+|..+ ..+|+.|++++ +.+..+|. ...+|+.|++++|.++.+|..+. .+|+.|++++|.+. .+|..+.
T Consensus 252 ~-L~~LP~~l-~s~L~~L~Ls~-N~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~- 324 (754)
T PRK15370 252 R-ITELPERL-PSALQSLDLFH-NKISCLPENLPEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLT-ALPETLP- 324 (754)
T ss_pred c-cCcCChhH-hCCCCEEECcC-CccCccccccCCCCcEEECCCCccccCcccch--hhHHHHHhcCCccc-cCCcccc-
Confidence 5 44666654 35678888774 45666664 33467788888877777776543 46777777777654 3454332
Q ss_pred CCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCcCC-
Q 042374 564 LKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYALNG- 642 (714)
Q Consensus 564 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~- 642 (714)
++|+.|.+.+|.+.. +|..+. ++|+.|++++|.+..+|..+ .++|+.|++++|.+..+.
T Consensus 325 -~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP~~l----------------p~~L~~LdLs~N~Lt~LP~ 384 (754)
T PRK15370 325 -PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLPETL----------------PPTITTLDVSRNALTNLPE 384 (754)
T ss_pred -ccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcCChhh----------------cCCcCEEECCCCcCCCCCH
Confidence 577777777776543 555443 57777778777777666432 246777777777766532
Q ss_pred -CCCCCCEEECCCCCCcccchhh----ccCCCCCeeccccCccc
Q 042374 643 -CLSSLEYLDLSGNDFESLPASI----KQLSRLRKLHLCYCDKL 681 (714)
Q Consensus 643 -~l~~L~~L~L~~n~l~~lp~~l----~~l~~L~~L~l~~~~~~ 681 (714)
...+|+.|++++|+++.+|..+ ..++++..|++.+|++.
T Consensus 385 ~l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 385 NLPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hHHHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 1235777777777777666543 33466777777777754
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=3.3e-17 Score=139.14 Aligned_cols=167 Identities=22% Similarity=0.234 Sum_probs=102.2
Q ss_pred CCCCCCCCCCCcccccCCCCCCccccCCcc-cccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCC
Q 042374 396 KTLPFDFEPENLTELSLPYSKVEQSWGGKR-LLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFN 474 (714)
Q Consensus 396 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~ 474 (714)
..++..+.+.+++.|.+++|+++.+++... +.+|++|++++|++....+.++.++.|+.|++.-|+ +..+|..|+.++
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p 102 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFP 102 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCc
Confidence 345556666777777777777776665544 666666666666655555556666666666665542 445566666666
Q ss_pred CCCEEecCCCCCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEeccccCCCCCCcEEecCCCCCC
Q 042374 475 HLSMLCFEGCKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRL 554 (714)
Q Consensus 475 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~ 554 (714)
-|+.||+..|+... ..+|..|..++.|+.|.+++|.+
T Consensus 103 ~levldltynnl~e------------------------------------------~~lpgnff~m~tlralyl~dndf- 139 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNE------------------------------------------NSLPGNFFYMTTLRALYLGDNDF- 139 (264)
T ss_pred hhhhhhcccccccc------------------------------------------ccCCcchhHHHHHHHHHhcCCCc-
Confidence 66666665543211 12345555566666666666653
Q ss_pred ccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCcc
Q 042374 555 KRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPST 607 (714)
Q Consensus 555 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~ 607 (714)
..+|..++++++|+.|.+..|... ++|..++.++.|+.|.+.+|+++.+|..
T Consensus 140 e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 140 EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh
Confidence 456666667777777766666543 3666666666777777777666666554
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=2.9e-16 Score=133.44 Aligned_cols=172 Identities=25% Similarity=0.348 Sum_probs=139.1
Q ss_pred CCcccccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCcE
Q 042374 422 GGKRLLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVT 501 (714)
Q Consensus 422 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 501 (714)
....+.+++.|.|++|+++...|.+..+.+|++|++.+|+ ++++|.+++.+++|+.|+++-
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgm------------------ 88 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGM------------------ 88 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecch------------------
Confidence 3334778888899999988888889999999999998875 678899999999999998865
Q ss_pred EEeCCCcCCCcccccccccceEecccccceEeccccCCCCCCcEEecCCCCCC-ccccccccCCCCCCEEEecCCCCCCC
Q 042374 502 INCGGCVNLTEFPQISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRL-KRISTSILKLKSLQNLYLIQCFDLEN 580 (714)
Q Consensus 502 L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~ 580 (714)
|.+..+|.+||.++-|+.|++.+|.+. ..+|..|..+..|+.|.+++|.+ +.
T Consensus 89 --------------------------nrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~ 141 (264)
T KOG0617|consen 89 --------------------------NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EI 141 (264)
T ss_pred --------------------------hhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-cc
Confidence 334466888999999999999988764 46788888888999999988764 56
Q ss_pred CchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCcCCCCCCCCEEECCCC
Q 042374 581 FPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYALNGCLSSLEYLDLSGN 655 (714)
Q Consensus 581 ~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~L~~L~L~~n 655 (714)
+|..++++++|+.|.+..|.+-++|.. ++.+..|+.|.+.+|++..+ .|.|-.|++-++
T Consensus 142 lp~dvg~lt~lqil~lrdndll~lpke--------------ig~lt~lrelhiqgnrl~vl--ppel~~l~l~~~ 200 (264)
T KOG0617|consen 142 LPPDVGKLTNLQILSLRDNDLLSLPKE--------------IGDLTRLRELHIQGNRLTVL--PPELANLDLVGN 200 (264)
T ss_pred CChhhhhhcceeEEeeccCchhhCcHH--------------HHHHHHHHHHhcccceeeec--Chhhhhhhhhhh
Confidence 888899999999999999988888776 78889999999999988764 344555555544
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.52 E-value=9.1e-16 Score=147.71 Aligned_cols=85 Identities=22% Similarity=0.266 Sum_probs=71.1
Q ss_pred hhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc-----CCCCCCCCEEECCCCCC
Q 042374 583 EILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL-----NGCLSSLEYLDLSGNDF 657 (714)
Q Consensus 583 ~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-----~~~l~~L~~L~L~~n~l 657 (714)
..|.++++|++|++++|+|+.+.... |.+...++.|.|..|.+.. +..+..|++|+|.+|+|
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~a-------------Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~i 334 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGA-------------FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQI 334 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhh-------------hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCee
Confidence 34888999999999999998887665 7888889999999998766 67788999999999999
Q ss_pred ccc-chhhccCCCCCeeccccCcc
Q 042374 658 ESL-PASIKQLSRLRKLHLCYCDK 680 (714)
Q Consensus 658 ~~l-p~~l~~l~~L~~L~l~~~~~ 680 (714)
+.+ |-++..+.+|.+|++-.|++
T Consensus 335 t~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 335 TTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred EEEecccccccceeeeeehccCcc
Confidence 965 66788889999999987774
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.45 E-value=1e-14 Score=150.20 Aligned_cols=248 Identities=19% Similarity=0.103 Sum_probs=140.3
Q ss_pred cccccEEeccCCccccc----cC-CCCCCCCCcEEecCCCCCC------ccCCccccCCCCCCEEecCCCCCCCccCCCC
Q 042374 426 LLSSKFIDLSHSQYLIR----MP-DLSEAPNLERINLLNCTNL------VSVPSSIQNFNHLSMLCFEGCKSLRSFPSNL 494 (714)
Q Consensus 426 ~~~L~~L~l~~~~~~~~----~~-~~~~l~~L~~L~L~~~~~~------~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~ 494 (714)
+..|+.+++++|.+... ++ .+...++|++|+++++... ..++..+..+++|++|++++|......+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 45566666666665321 11 2445566677777665432 1123445666777777777765433222211
Q ss_pred C-CCCCcEEEeCCCcCCCcccccccccceEecccccce-----EeccccCCC-CCCcEEecCCCCCCc----cccccccC
Q 042374 495 H-FVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIK-----EVPSSVGCL-TNLKVLSLSQCPRLK----RISTSILK 563 (714)
Q Consensus 495 ~-~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~-----~lp~~~~~l-~~L~~L~l~~~~~~~----~~~~~~~~ 563 (714)
. +.. . ++|++|++++|.+. .+...+..+ ++|+.|++++|.+.. .++..+..
T Consensus 102 ~~l~~-----------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 163 (319)
T cd00116 102 ESLLR-----------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRA 163 (319)
T ss_pred HHHhc-----------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHh
Confidence 1 111 1 22444444444433 122334445 677777777776652 23334556
Q ss_pred CCCCCEEEecCCCCCC----CCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcC
Q 042374 564 LKSLQNLYLIQCFDLE----NFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYA 639 (714)
Q Consensus 564 l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 639 (714)
+++|++|++.+|.+.. .++..+..+++|++|++++|.+..... ..+...+..+++|+.|++++|.+.
T Consensus 164 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~---------~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA---------SALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH---------HHHHHHhcccCCCCEEecCCCcCc
Confidence 6677777777776552 123334445577777777776653221 112223556677888888887766
Q ss_pred c----------CCCCCCCCEEECCCCCCc-----ccchhhccCCCCCeeccccCccccc----cCC---Cc-CcccEeec
Q 042374 640 L----------NGCLSSLEYLDLSGNDFE-----SLPASIKQLSRLRKLHLCYCDKLQS----IPE---LP-LSLKWLDA 696 (714)
Q Consensus 640 ~----------~~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~l~~~~~~~~----lp~---~~-~~L~~L~l 696 (714)
+ ....+.|+.|++++|.++ .++..+..+++|+++++++|.+... +.. .+ +.|+.+++
T Consensus 235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~ 314 (319)
T cd00116 235 DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWV 314 (319)
T ss_pred hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhccc
Confidence 4 112478888888888875 3455566678888888888886632 221 23 67888888
Q ss_pred ccCc
Q 042374 697 SNCE 700 (714)
Q Consensus 697 ~~c~ 700 (714)
.++|
T Consensus 315 ~~~~ 318 (319)
T cd00116 315 KDDS 318 (319)
T ss_pred CCCC
Confidence 7764
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.44 E-value=3.4e-15 Score=143.82 Aligned_cols=281 Identities=19% Similarity=0.188 Sum_probs=166.1
Q ss_pred EEecCCCCCCCCCCCCCCCcccccCCCCCCccccCCcc--cccccEEeccCCccccccC-CCCCCCCCcEEecCCCCCCc
Q 042374 388 LHWHEYPLKTLPFDFEPENLTELSLPYSKVEQSWGGKR--LLSSKFIDLSHSQYLIRMP-DLSEAPNLERINLLNCTNLV 464 (714)
Q Consensus 388 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~--~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~ 464 (714)
++.++-.+..+|... +...+.+.|..|.|+.++++.+ +++||.|||++|.+...-| .|.+++.|-.|.+.++..+.
T Consensus 51 VdCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EEccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 344444555555443 2345666667777777776665 7777777777777776666 37777777776666644455
Q ss_pred cCC-ccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEecc-ccCCCCC
Q 042374 465 SVP-SSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPS-SVGCLTN 542 (714)
Q Consensus 465 ~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~-~~~~l~~ 542 (714)
.+| ..|++|..|+.|.+.-|+..-... .......++..|.+..|.+..++. .+..+..
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~--------------------~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~ 189 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQ--------------------DALRDLPSLSLLSLYDNKIQSICKGTFQGLAA 189 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhH--------------------HHHHHhhhcchhcccchhhhhhccccccchhc
Confidence 565 457777777777776543211111 111223344555666677777776 4778888
Q ss_pred CcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCcc------------ccccCccccC
Q 042374 543 LKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTK------------IRELPSTFEK 610 (714)
Q Consensus 543 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~------------l~~~~~~~~~ 610 (714)
++++.+..|.+.. .++++.|...... .|..++.........+.+.+ .+++|+....
T Consensus 190 i~tlhlA~np~ic-----dCnL~wla~~~a~-------~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~ 257 (498)
T KOG4237|consen 190 IKTLHLAQNPFIC-----DCNLPWLADDLAM-------NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSS 257 (498)
T ss_pred cchHhhhcCcccc-----ccccchhhhHHhh-------chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhcc
Confidence 8888877765321 1122222111100 01111111111111111111 1112211111
Q ss_pred CCCCcccCCC-ccCCCCCCCceeccCCCcCc-----CCCCCCCCEEECCCCCCcccch-hhccCCCCCeeccccCccccc
Q 042374 611 GEGTESQLPS-SVADTNDLEGLSLYLRNYAL-----NGCLSSLEYLDLSGNDFESLPA-SIKQLSRLRKLHLCYCDKLQS 683 (714)
Q Consensus 611 ~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~~~~~~~ 683 (714)
.+......|. -|..+++|+.|+|++|.++. |.....+++|.|..|++..+.. .+.++..|+.|+|++|++..-
T Consensus 258 ~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~ 337 (498)
T KOG4237|consen 258 EDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTV 337 (498)
T ss_pred ccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEE
Confidence 1111111121 28899999999999999987 7788999999999999998765 578999999999999998877
Q ss_pred cCCCc---CcccEeecccCcc
Q 042374 684 IPELP---LSLKWLDASNCER 701 (714)
Q Consensus 684 lp~~~---~~L~~L~l~~c~~ 701 (714)
-|..+ .+|.+|++-.+|.
T Consensus 338 ~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 338 APGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred ecccccccceeeeeehccCcc
Confidence 77543 5788888877663
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.41 E-value=3.6e-14 Score=146.06 Aligned_cols=242 Identities=21% Similarity=0.162 Sum_probs=158.7
Q ss_pred EeccCCcccc-ccC-CCCCCCCCcEEecCCCCCCc----cCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEeC
Q 042374 432 IDLSHSQYLI-RMP-DLSEAPNLERINLLNCTNLV----SVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINCG 505 (714)
Q Consensus 432 L~l~~~~~~~-~~~-~~~~l~~L~~L~L~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 505 (714)
|+|..+.+.. ... -+..+.+|++|++++|.... .++..+...+.|++|+++++.... .+.
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~------------- 68 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPR------------- 68 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cch-------------
Confidence 4455554431 111 24556779999999986422 345567777889999998864321 111
Q ss_pred CCcCCCccccc---ccccceEecccccceE-eccccCCC---CCCcEEecCCCCCCc----cccccccCC-CCCCEEEec
Q 042374 506 GCVNLTEFPQI---SGSVTKLILWETAIKE-VPSSVGCL---TNLKVLSLSQCPRLK----RISTSILKL-KSLQNLYLI 573 (714)
Q Consensus 506 ~~~~l~~~~~~---~~~L~~L~l~~~~i~~-lp~~~~~l---~~L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~l~ 573 (714)
.+..++.. ..+|++|+++++.+.. .+..+..+ ++|++|++++|.+.. .+...+..+ ++|+.|++.
T Consensus 69 ---~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~ 145 (319)
T cd00116 69 ---GLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLG 145 (319)
T ss_pred ---HHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcC
Confidence 01111111 2356666666666652 23333333 459999999998763 233456667 899999999
Q ss_pred CCCCCC----CCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc---------
Q 042374 574 QCFDLE----NFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL--------- 640 (714)
Q Consensus 574 ~~~~~~----~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~--------- 640 (714)
+|.+.. .++..+..+++|++|++++|.+..-.. ..++..+..+++|+.|++++|.+..
T Consensus 146 ~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 146 RNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI---------RALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH---------HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 998763 234557777899999999998763110 1122235566899999999998864
Q ss_pred CCCCCCCCEEECCCCCCcc--cchhhc----cCCCCCeeccccCccc--------cccCCCcCcccEeecccCc
Q 042374 641 NGCLSSLEYLDLSGNDFES--LPASIK----QLSRLRKLHLCYCDKL--------QSIPELPLSLKWLDASNCE 700 (714)
Q Consensus 641 ~~~l~~L~~L~L~~n~l~~--lp~~l~----~l~~L~~L~l~~~~~~--------~~lp~~~~~L~~L~l~~c~ 700 (714)
+..+++|+.|++++|.++. +..... ..+.|++|++++|.+. ..++. .++|+.+++++|.
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~-~~~L~~l~l~~N~ 289 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAE-KESLLELDLRGNK 289 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhc-CCCccEEECCCCC
Confidence 5568899999999999884 211112 2489999999999875 23333 3789999999985
No 25
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.33 E-value=1.6e-10 Score=122.25 Aligned_cols=243 Identities=15% Similarity=0.096 Sum_probs=145.7
Q ss_pred CCCCcccchhhHHHHHhhhccc--CCCeEEEEEEccCchhHHHHHHHHHHHHhhcc--cceEEeeechhcccccChHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLE--SRDVRIVGIWGMGGIGKTTIASAVFHQISRHF--QGKCFMANVREESNKMGAIHVR 130 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~--~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~ 130 (714)
.++.++||++++++|...+... ......+.|+|++|+|||++++.++++..... -..+++. +....+...++
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in----~~~~~~~~~~~ 103 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN----CQIDRTRYAIF 103 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE----CCcCCCHHHHH
Confidence 6788999999999999988532 23445678999999999999999999876654 2344444 33344566778
Q ss_pred HHHHHHHhCCCCCcc-cchhhH-HHHHHHhc--CCcEEEEEeCCCCC-----HHHHHHHhcCCCCCCCCc--EEEEEcCC
Q 042374 131 DEVISQVLGDKNLKI-GTLVIH-QNIRKRLR--QVKMLIVLDAVHDG-----FTQLESLAGELDKFTTGS--RIIITTRD 199 (714)
Q Consensus 131 ~~~~~~~~~~~~~~~-~~~~~~-~~l~~~l~--~k~~LlVlDdv~~~-----~~~~~~l~~~l~~~~~gs--~IliTtR~ 199 (714)
.+++.++.+...+.. ...+.. +.+.+.+. +++.+||+|+++.. .+.+..+...... .+++ .+|.++..
T Consensus 104 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~ 182 (394)
T PRK00411 104 SEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSD 182 (394)
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECC
Confidence 888888655322221 122333 66666664 45689999999764 1234444443322 1232 35666554
Q ss_pred hhHHHhc-------CCCeEEecCCCCHHHHHHHHHHhhhhc---CCCChhHHHHHHHHHHHh----cCCChhhHHhhhhh
Q 042374 200 KQVLDKC-------GVNYVYEVEGLEHNKAFELFYRKAFRQ---NNYPPDFLGLSLEVVHYA----RNNPLALEVLGSSL 265 (714)
Q Consensus 200 ~~v~~~~-------~~~~~~~l~~L~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~i~~~~----~g~Plai~~~~~~l 265 (714)
..+.... .....+.+++++.++..+++..++... ...++ +.++.+++.+ +..+.|+..+-.+.
T Consensus 183 ~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~---~~l~~i~~~~~~~~Gd~r~a~~ll~~a~ 259 (394)
T PRK00411 183 LTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDD---EVLDLIADLTAREHGDARVAIDLLRRAG 259 (394)
T ss_pred cchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCH---hHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4332211 113467899999999999998876322 12222 3334444444 44556665543221
Q ss_pred --c---cC---CHHHHHHHHHHHhcCCCchHHHHHHHhhhcCchhhHhhhhhccc
Q 042374 266 --Y---QK---SKQQWEDRLHNLRLISEPNIYKVLKISYDELNSKEKEMFLDIAC 312 (714)
Q Consensus 266 --~---~~---~~~~w~~~l~~l~~~~~~~~~~~l~ls~~~L~~~~k~~~~~~~~ 312 (714)
. +. +.+....+++... .....-.+.+||.+.|..+..++.
T Consensus 260 ~~a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~ 307 (394)
T PRK00411 260 LIAEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVR 307 (394)
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1 11 4556666665541 122334577899988877665553
No 26
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.31 E-value=1.7e-11 Score=119.93 Aligned_cols=193 Identities=18% Similarity=0.200 Sum_probs=100.9
Q ss_pred cccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHH-----
Q 042374 59 FVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEV----- 133 (714)
Q Consensus 59 ~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~----- 133 (714)
|+||++|+++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+..++.-..++|+..... ........+
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~-----~~~~~~~~~~~~~~ 73 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEE-----SNESSLRSFIEETS 73 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTB-----SHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccc-----hhhhHHHHHHHHHH
Confidence 799999999999988543 35688999999999999999999987543334455542211 111111111
Q ss_pred --------HHHHhCCCCC-------cccchhhHHHHHHHhc--CCcEEEEEeCCCCCH-------H---HHHHHhcCCCC
Q 042374 134 --------ISQVLGDKNL-------KIGTLVIHQNIRKRLR--QVKMLIVLDAVHDGF-------T---QLESLAGELDK 186 (714)
Q Consensus 134 --------~~~~~~~~~~-------~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-------~---~~~~l~~~l~~ 186 (714)
+......... ..........+.+.+. +++++||+||++... . .+..+......
T Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~ 153 (234)
T PF01637_consen 74 LADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS 153 (234)
T ss_dssp HHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc
Confidence 1111111111 0111222244444443 446999999986542 1 12222222222
Q ss_pred CCCCcEEEEEcCChhHHHh--------cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhh
Q 042374 187 FTTGSRIIITTRDKQVLDK--------CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLAL 258 (714)
Q Consensus 187 ~~~gs~IliTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 258 (714)
..+. .+++++....+... .+....+.+++|+.+++++++...+-..... +.-....++|+..++|+|..+
T Consensus 154 ~~~~-~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l 231 (234)
T PF01637_consen 154 QQNV-SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYL 231 (234)
T ss_dssp -TTE-EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHH
T ss_pred cCCc-eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHH
Confidence 2333 45555554544432 2333459999999999999998864322111 112356799999999999987
Q ss_pred HH
Q 042374 259 EV 260 (714)
Q Consensus 259 ~~ 260 (714)
..
T Consensus 232 ~~ 233 (234)
T PF01637_consen 232 QE 233 (234)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 27
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.25 E-value=1.1e-09 Score=109.23 Aligned_cols=179 Identities=15% Similarity=0.148 Sum_probs=108.9
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHH--
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKR-- 157 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 157 (714)
.+.+.|+|++|+||||+++.+++.....--..+|+. ....+..+++..+... +|..............+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~l~~i~~~-lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTRVDAEDLLRMVAAD-FGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCCCCHHHHHHHHHHH-cCCCCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999987653211122332 2234556677676655 45433222222222333332
Q ss_pred ---hcCCcEEEEEeCCCCC-HHHHHHHhcCCC---CCCCCcEEEEEcCChhHHHhc----------CCCeEEecCCCCHH
Q 042374 158 ---LRQVKMLIVLDAVHDG-FTQLESLAGELD---KFTTGSRIIITTRDKQVLDKC----------GVNYVYEVEGLEHN 220 (714)
Q Consensus 158 ---l~~k~~LlVlDdv~~~-~~~~~~l~~~l~---~~~~gs~IliTtR~~~v~~~~----------~~~~~~~l~~L~~~ 220 (714)
..+++.++|+||++.. ...++.+..... .......|++|.... ..... .....+++++++.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 2678899999999876 234444432211 112233456665543 21111 12346889999999
Q ss_pred HHHHHHHHhhhhcCC--CChhHHHHHHHHHHHhcCCChhhHHhhhhh
Q 042374 221 KAFELFYRKAFRQNN--YPPDFLGLSLEVVHYARNNPLALEVLGSSL 265 (714)
Q Consensus 221 ~~~~l~~~~~~~~~~--~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 265 (714)
|..+++...+..... ...-..+..+.|++.++|.|..++.++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999877643221 111223688999999999999999888776
No 28
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.24 E-value=2.2e-09 Score=112.39 Aligned_cols=247 Identities=16% Similarity=0.126 Sum_probs=142.1
Q ss_pred CCCCcccchhhHHHHHhhhcc--cCCCeEEEEEEccCchhHHHHHHHHHHHHhhccc------ceEEeeechhcccccCh
Q 042374 55 DLDGFVGLNSRIEEVKSLLCL--ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQ------GKCFMANVREESNKMGA 126 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~--~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~------~~~~~~~~~~~~~~~~~ 126 (714)
.++.++||++++++|..++.. .......+.|+|++|+|||++++.+++.+.+..+ ..+|+. +....+.
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in----~~~~~~~ 88 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN----CQILDTL 88 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE----CCCCCCH
Confidence 567899999999999998864 2234457899999999999999999987654322 244554 3334455
Q ss_pred HHHHHHHHHHHh--CCCCCcc--cchhhHHHHHHHh--cCCcEEEEEeCCCCCH----HHHHHHhcCC--CCCC-CCcEE
Q 042374 127 IHVRDEVISQVL--GDKNLKI--GTLVIHQNIRKRL--RQVKMLIVLDAVHDGF----TQLESLAGEL--DKFT-TGSRI 193 (714)
Q Consensus 127 ~~~~~~~~~~~~--~~~~~~~--~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~----~~~~~l~~~l--~~~~-~gs~I 193 (714)
..++.+++.++. +...+.. ...+..+.+.+.+ .+++++||+|+++... ..+..+.... .... ....+
T Consensus 89 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~l 168 (365)
T TIGR02928 89 YQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGV 168 (365)
T ss_pred HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEE
Confidence 677888888764 3222111 1122225555555 3567899999997641 2233333321 1111 22344
Q ss_pred EEEcCChhHHHhc-------CCCeEEecCCCCHHHHHHHHHHhhhh---cCCCChhHHHHHHHHHHHhcCCChhhHHhh-
Q 042374 194 IITTRDKQVLDKC-------GVNYVYEVEGLEHNKAFELFYRKAFR---QNNYPPDFLGLSLEVVHYARNNPLALEVLG- 262 (714)
Q Consensus 194 liTtR~~~v~~~~-------~~~~~~~l~~L~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~i~~~~~g~Plai~~~~- 262 (714)
|.++......... .....+.+++++.+|..+++..++.. .....++..+...+++....|.+-.+..+.
T Consensus 169 I~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~ 248 (365)
T TIGR02928 169 IGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLR 248 (365)
T ss_pred EEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 5555433321111 11246889999999999999988641 112233333445566777778885433221
Q ss_pred hhh--c---c---CCHHHHHHHHHHHhcCCCchHHHHHHHhhhcCchhhHhhhhhccc
Q 042374 263 SSL--Y---Q---KSKQQWEDRLHNLRLISEPNIYKVLKISYDELNSKEKEMFLDIAC 312 (714)
Q Consensus 263 ~~l--~---~---~~~~~w~~~l~~l~~~~~~~~~~~l~ls~~~L~~~~k~~~~~~~~ 312 (714)
... . + -+.+..+.+.+... .....-...+||.+.+..+..+..
T Consensus 249 ~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~ 299 (365)
T TIGR02928 249 VAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIAN 299 (365)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111 1 1 13444455444431 122334566888888766665553
No 29
>PF05729 NACHT: NACHT domain
Probab=99.14 E-value=4.9e-10 Score=102.95 Aligned_cols=143 Identities=18% Similarity=0.281 Sum_probs=85.3
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhhcc------cceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHH
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISRHF------QGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNI 154 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 154 (714)
+++.|+|.+|+||||+++.++.++.... ...+|+. .+..........+...+..+. .... .... ..+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~-~~~~---~~~~--~~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISDSNNSRSLADLLFDQL-PESI---APIE--ELL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhhccccchHHHHHHHhh-ccch---hhhH--HHH
Confidence 4789999999999999999998765543 3344443 222222222223333333221 1111 1110 112
Q ss_pred HHH-hcCCcEEEEEeCCCCCHH--------HHHHHh-cCCCC-CCCCcEEEEEcCChhH---HHhcCCCeEEecCCCCHH
Q 042374 155 RKR-LRQVKMLIVLDAVHDGFT--------QLESLA-GELDK-FTTGSRIIITTRDKQV---LDKCGVNYVYEVEGLEHN 220 (714)
Q Consensus 155 ~~~-l~~k~~LlVlDdv~~~~~--------~~~~l~-~~l~~-~~~gs~IliTtR~~~v---~~~~~~~~~~~l~~L~~~ 220 (714)
... -..+++++|+|+++.... .+..+. ..+.. ..++++|+||+|.... .........+++.+|+++
T Consensus 74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 222 257899999999976511 122222 22222 3468999999998866 233344468999999999
Q ss_pred HHHHHHHHhh
Q 042374 221 KAFELFYRKA 230 (714)
Q Consensus 221 ~~~~l~~~~~ 230 (714)
+..+++.++.
T Consensus 154 ~~~~~~~~~f 163 (166)
T PF05729_consen 154 DIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHh
Confidence 9999997763
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.12 E-value=5.4e-11 Score=134.06 Aligned_cols=194 Identities=20% Similarity=0.270 Sum_probs=132.1
Q ss_pred CceEEEecCCCCCCCCCCCCCCCcccccCCCCC--CccccCC--cccccccEEeccCCccccccC-CCCCCCCCcEEecC
Q 042374 384 ELRYLHWHEYPLKTLPFDFEPENLTELSLPYSK--VEQSWGG--KRLLSSKFIDLSHSQYLIRMP-DLSEAPNLERINLL 458 (714)
Q Consensus 384 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~--i~~~~~~--~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~ 458 (714)
..|.+.+.++....++.....++|++|-+..|. +...... ..++.|++|||++|.-...+| .++++-+||+|+++
T Consensus 524 ~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS 603 (889)
T ss_pred heeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence 678888999999999888877899999999986 5666553 339999999999998888888 58999999999999
Q ss_pred CCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCC-CCCCcEEEeCCCc-CCCcc-cccccccceEecccccceEe--
Q 042374 459 NCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLH-FVCPVTINCGGCV-NLTEF-PQISGSVTKLILWETAIKEV-- 533 (714)
Q Consensus 459 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~-~l~~~-~~~~~~L~~L~l~~~~i~~l-- 533 (714)
++ .+..+|.++++|..|.+|++..+.....+|.... +.+|++|.+..-. ..... -....+|+.|..-.+.+...
T Consensus 604 ~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~ 682 (889)
T KOG4658|consen 604 DT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLL 682 (889)
T ss_pred CC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHh
Confidence 95 5779999999999999999998877777777666 8999999886533 11000 01112233332222222111
Q ss_pred ccccCCCCCCc----EEecCCCCCCccccccccCCCCCCEEEecCCCCCC
Q 042374 534 PSSVGCLTNLK----VLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLE 579 (714)
Q Consensus 534 p~~~~~l~~L~----~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 579 (714)
-..+..+++|. .+.+.+|. ....+..+..+.+|+.|.+.+|...+
T Consensus 683 ~e~l~~~~~L~~~~~~l~~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 683 LEDLLGMTRLRSLLQSLSIEGCS-KRTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred HhhhhhhHHHHHHhHhhhhcccc-cceeecccccccCcceEEEEcCCCch
Confidence 11112222222 23332222 23344566777888888888887654
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.07 E-value=7.3e-12 Score=126.75 Aligned_cols=172 Identities=23% Similarity=0.310 Sum_probs=111.5
Q ss_pred ccCCCCCCccccCCcc---cccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCC
Q 042374 410 LSLPYSKVEQSWGGKR---LLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKS 486 (714)
Q Consensus 410 L~l~~~~i~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~ 486 (714)
|.|++-+++.++.+.. +.--...|++.|++.....+++.+..|+.+.|..|. ...+|..+.++..|.+|+|+.|.
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq- 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ- 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch-
Confidence 4444444444443332 444455677777765554466666777777777654 44677888888888888888753
Q ss_pred CCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCC
Q 042374 487 LRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKS 566 (714)
Q Consensus 487 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 566 (714)
+..+|..+..- -|+.|-+++|+++.+|..++.+.+|..|+.+.|.+ ..+|..++++.+
T Consensus 133 lS~lp~~lC~l---------------------pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l~s 190 (722)
T KOG0532|consen 133 LSHLPDGLCDL---------------------PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYLTS 190 (722)
T ss_pred hhcCChhhhcC---------------------cceeEEEecCccccCCcccccchhHHHhhhhhhhh-hhchHHhhhHHH
Confidence 33444333211 24555566677777888888777888888887754 456667777777
Q ss_pred CCEEEecCCCCCCCCchhhhccccccccccCCccccccCcc
Q 042374 567 LQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPST 607 (714)
Q Consensus 567 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~ 607 (714)
|+.|.+..|+.. .+|..+..|+ |..||+++|++..+|.+
T Consensus 191 lr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis~iPv~ 229 (722)
T KOG0532|consen 191 LRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKISYLPVD 229 (722)
T ss_pred HHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCceeecchh
Confidence 887777776543 4666666443 77778888877777766
No 32
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.05 E-value=6.4e-09 Score=122.98 Aligned_cols=242 Identities=14% Similarity=0.142 Sum_probs=141.9
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
.+..+|-|+.-.+.+.+ ....+++.|+|++|.||||++..+..+ +..++|+..-. .+.+.......++
T Consensus 12 ~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~----~~~~~w~~l~~---~d~~~~~f~~~l~ 79 (903)
T PRK04841 12 RLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG----KNNLGWYSLDE---SDNQPERFASYLI 79 (903)
T ss_pred CccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh----CCCeEEEecCc---ccCCHHHHHHHHH
Confidence 45677888866665543 235789999999999999999998753 33688996221 2233333334444
Q ss_pred HHHh---CCCCC---------cccchhhH-HHHHHHhc--CCcEEEEEeCCCCCH-HHHHHHhcC-CCCCCCCcEEEEEc
Q 042374 135 SQVL---GDKNL---------KIGTLVIH-QNIRKRLR--QVKMLIVLDAVHDGF-TQLESLAGE-LDKFTTGSRIIITT 197 (714)
Q Consensus 135 ~~~~---~~~~~---------~~~~~~~~-~~l~~~l~--~k~~LlVlDdv~~~~-~~~~~l~~~-l~~~~~gs~IliTt 197 (714)
..+. ..... ........ ..+...+. +.+++||+||+.... .....+... +....++.++||||
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~s 159 (903)
T PRK04841 80 AALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLS 159 (903)
T ss_pred HHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEe
Confidence 4431 11000 00111111 33333442 678999999996531 222222222 23334566888999
Q ss_pred CChhHH---HhcCCCeEEecC----CCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHhhhhhccCCH
Q 042374 198 RDKQVL---DKCGVNYVYEVE----GLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVLGSSLYQKSK 270 (714)
Q Consensus 198 R~~~v~---~~~~~~~~~~l~----~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~ 270 (714)
|...-. .........++. +|+.+|+.++|...... . .+ .+.+.++.+.|+|.|+++..++..+.+...
T Consensus 160 R~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-~-~~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~ 234 (903)
T PRK04841 160 RNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS-P-IE---AAESSRLCDDVEGWATALQLIALSARQNNS 234 (903)
T ss_pred CCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC-C-CC---HHHHHHHHHHhCChHHHHHHHHHHHhhCCC
Confidence 974211 111112345555 99999999999765422 1 11 155788999999999999988877654321
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHH-hhhcCchhhHhhhhhccccc
Q 042374 271 QQWEDRLHNLRLISEPNIYKVLKI-SYDELNSKEKEMFLDIACFF 314 (714)
Q Consensus 271 ~~w~~~l~~l~~~~~~~~~~~l~l-s~~~L~~~~k~~~~~~~~fp 314 (714)
. -......+.......+...+.- .+..||+..+..+...++++
T Consensus 235 ~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~ 278 (903)
T PRK04841 235 S-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR 278 (903)
T ss_pred c-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc
Confidence 0 0111122221123345444333 37899999999999999986
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=7.4e-11 Score=115.94 Aligned_cols=131 Identities=21% Similarity=0.259 Sum_probs=84.8
Q ss_pred CCCCCcEEecCCCCCCc-cccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCccc
Q 042374 539 CLTNLKVLSLSQCPRLK-RISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQ 617 (714)
Q Consensus 539 ~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 617 (714)
.+++|+.|.|++|.+.- .+......+|+|+.|.+..|...........-+..|+.|+|++|.+-+++...
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~--------- 265 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGY--------- 265 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccc---------
Confidence 45677777777776642 22223445777788887777433222223344566778888887776665321
Q ss_pred CCCccCCCCCCCceeccCCCcCc-----------CCCCCCCCEEECCCCCCcccch--hhccCCCCCeeccccCccc
Q 042374 618 LPSSVADTNDLEGLSLYLRNYAL-----------NGCLSSLEYLDLSGNDFESLPA--SIKQLSRLRKLHLCYCDKL 681 (714)
Q Consensus 618 l~~~~~~~~~L~~L~l~~~~~~~-----------~~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~l~~~~~~ 681 (714)
..+.++.|..|+++.|.+.+ ...+++|++|++..|++..+++ .+..+++|+.|.+..|.+.
T Consensus 266 ---~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 266 ---KVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ---ccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 15667777777777777665 2347788888888888876664 3556677888887777754
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=2.8e-10 Score=102.36 Aligned_cols=33 Identities=30% Similarity=0.327 Sum_probs=12.7
Q ss_pred CCCCCCEEECCCCCCcccch----hhccCCCCCeecc
Q 042374 643 CLSSLEYLDLSGNDFESLPA----SIKQLSRLRKLHL 675 (714)
Q Consensus 643 ~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~l 675 (714)
.+++|+.|+|.+|.++.-+. .+..+|+|+.||-
T Consensus 111 ~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 111 SLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp G-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred cCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 34555555555555553322 2445555555554
No 35
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.96 E-value=1.2e-08 Score=115.88 Aligned_cols=260 Identities=15% Similarity=0.194 Sum_probs=153.8
Q ss_pred CcccchhhHHHHHhhhccc-CCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee--echhcccccChHHHHHHHH
Q 042374 58 GFVGLNSRIEEVKSLLCLE-SRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA--NVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 58 ~~vGr~~~~~~l~~~l~~~-~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~--~~~~~~~~~~~~~~~~~~~ 134 (714)
.++||+.+++.|...+..- .+...++.+.|.+|||||+++++|.+.+.+.+...+--. .......-..+...+++++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 3799999999999988753 345679999999999999999999997655421111000 0111111223334445555
Q ss_pred HHHhCCCCC---------------------------------cc-------cchhh-----H-HHHHHHh-cCCcEEEEE
Q 042374 135 SQVLGDKNL---------------------------------KI-------GTLVI-----H-QNIRKRL-RQVKMLIVL 167 (714)
Q Consensus 135 ~~~~~~~~~---------------------------------~~-------~~~~~-----~-~~l~~~l-~~k~~LlVl 167 (714)
.+++..... +. ...+. . ..+.... +.++.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 444222110 00 00000 0 2222233 345999999
Q ss_pred eCC-CCCHHH---HHHHhcCCC--C-CCCCcEEEEEcCCh--hHHHhcCCCeEEecCCCCHHHHHHHHHHhhhhcCCCCh
Q 042374 168 DAV-HDGFTQ---LESLAGELD--K-FTTGSRIIITTRDK--QVLDKCGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPP 238 (714)
Q Consensus 168 Ddv-~~~~~~---~~~l~~~l~--~-~~~gs~IliTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~ 238 (714)
||+ |-+... ++.+..... . .......+.|.+.. ...........+.|.||+..+...+............
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~~- 239 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLLP- 239 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccccc-
Confidence 999 555222 233333221 0 01122233333333 1112223346899999999999999987753322222
Q ss_pred hHHHHHHHHHHHhcCCChhhHHhhhhhccC-------CHHHHHHHHHHHhcCCC-chHHHHHHHhhhcCchhhHhhhhhc
Q 042374 239 DFLGLSLEVVHYARNNPLALEVLGSSLYQK-------SKQQWEDRLHNLRLISE-PNIYKVLKISYDELNSKEKEMFLDI 310 (714)
Q Consensus 239 ~~~~~~~~i~~~~~g~Plai~~~~~~l~~~-------~~~~w~~~l~~l~~~~~-~~~~~~l~ls~~~L~~~~k~~~~~~ 310 (714)
......|+++..|+|++++.+-..+... +...|+.-...+...+. +.+...+....+.||...+......
T Consensus 240 --~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~A 317 (849)
T COG3899 240 --APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAA 317 (849)
T ss_pred --chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 2678899999999999999998888653 33445544434333222 2245567788899999999999999
Q ss_pred cccccCcccc
Q 042374 311 ACFFKGEDLD 320 (714)
Q Consensus 311 ~~fp~~~~~~ 320 (714)
+++-..+..+
T Consensus 318 A~iG~~F~l~ 327 (849)
T COG3899 318 ACIGNRFDLD 327 (849)
T ss_pred HHhCccCCHH
Confidence 9986555444
No 36
>PRK06893 DNA replication initiation factor; Validated
Probab=98.95 E-value=1.2e-08 Score=98.09 Aligned_cols=151 Identities=13% Similarity=0.188 Sum_probs=92.8
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHhc
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRLR 159 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 159 (714)
.+.+.|+|++|+|||+|++.+++.+..+...+.|+.. .. ..... ..+.+.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~----~~---~~~~~---------------------~~~~~~~~ 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL----SK---SQYFS---------------------PAVLENLE 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH----HH---hhhhh---------------------HHHHhhcc
Confidence 3568999999999999999999987666666677751 10 00000 11111122
Q ss_pred CCcEEEEEeCCCCC--HHHHH-HHhcCCCCC-CCCcEEE-EEcCC---------hhHHHhcCCCeEEecCCCCHHHHHHH
Q 042374 160 QVKMLIVLDAVHDG--FTQLE-SLAGELDKF-TTGSRII-ITTRD---------KQVLDKCGVNYVYEVEGLEHNKAFEL 225 (714)
Q Consensus 160 ~k~~LlVlDdv~~~--~~~~~-~l~~~l~~~-~~gs~Il-iTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~l 225 (714)
+.-++|+||+|.. ...|+ .+...+... ..|..++ +|++. +++...++....+++++++.++.+++
T Consensus 91 -~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 91 -QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred -cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHH
Confidence 2348999999863 23344 222222221 2355554 45543 24444445566899999999999999
Q ss_pred HHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHh
Q 042374 226 FYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVL 261 (714)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 261 (714)
+.+.++...-.-+ +++..-|++.+.|..-.+..+
T Consensus 170 L~~~a~~~~l~l~--~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 170 LQRNAYQRGIELS--DEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHcCCCCC--HHHHHHHHHhccCCHHHHHHH
Confidence 9998875432211 256778888888776554433
No 37
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.95 E-value=3.6e-08 Score=106.62 Aligned_cols=172 Identities=13% Similarity=0.127 Sum_probs=104.3
Q ss_pred CCCCcccchhhHHHHHhhhcc---cCCCeEEEEEEccCchhHHHHHHHHHHHHhhc-----cc--ceEEeeechhccccc
Q 042374 55 DLDGFVGLNSRIEEVKSLLCL---ESRDVRIVGIWGMGGIGKTTIASAVFHQISRH-----FQ--GKCFMANVREESNKM 124 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~---~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~-----f~--~~~~~~~~~~~~~~~ 124 (714)
.++.++|||+|+++|...|.. +.....++.|+|++|.|||+.++.|.+++.+. .. .++++. +....
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN----Cm~Ls 828 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN----GMNVV 828 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe----CCccC
Confidence 678899999999999988864 23334677899999999999999999876432 11 244555 33334
Q ss_pred ChHHHHHHHHHHHhCCCCCcccch-hhHHHHHHHhc---CCcEEEEEeCCCCCH----HHHHHHhcCCCCCCCCcEEEE-
Q 042374 125 GAIHVRDEVISQVLGDKNLKIGTL-VIHQNIRKRLR---QVKMLIVLDAVHDGF----TQLESLAGELDKFTTGSRIII- 195 (714)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~---~k~~LlVlDdv~~~~----~~~~~l~~~l~~~~~gs~Ili- 195 (714)
....++..+..++.+......... +..+.+.+.+. ....+||||+++... +.+-.|... + ...+++|++
T Consensus 829 tp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~-~-~~s~SKLiLI 906 (1164)
T PTZ00112 829 HPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW-P-TKINSKLVLI 906 (1164)
T ss_pred CHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH-h-hccCCeEEEE
Confidence 566677777777655543332222 22244444442 224689999997541 122222222 1 123455443
Q ss_pred -EcCChhH----HHhcC---CCeEEecCCCCHHHHHHHHHHhhhh
Q 042374 196 -TTRDKQV----LDKCG---VNYVYEVEGLEHNKAFELFYRKAFR 232 (714)
Q Consensus 196 -TtR~~~v----~~~~~---~~~~~~l~~L~~~~~~~l~~~~~~~ 232 (714)
++.+.+. ...+. ....+..++++.+|..+++..++..
T Consensus 907 GISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 907 AISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred EecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh
Confidence 3432211 11111 1234677999999999999998753
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=1.1e-09 Score=98.69 Aligned_cols=126 Identities=23% Similarity=0.199 Sum_probs=42.1
Q ss_pred CCCCCCcEEecCCCCCCcccccccc-CCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcc
Q 042374 538 GCLTNLKVLSLSQCPRLKRISTSIL-KLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTES 616 (714)
Q Consensus 538 ~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 616 (714)
.+..++++|+|++|.+... +.++ .+.+|+.|++++|.+.. + +.+..+++|+.|++++|.|+.++..+
T Consensus 16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i~~~l-------- 83 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSISEGL-------- 83 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHH--------
T ss_pred ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCccccch--------
Confidence 3344566666666654321 2333 34556666666655432 2 23444555555555555554443211
Q ss_pred cCCCccCCCCCCCceeccCCCcCcCCCCCCCCEEECCCCCCcccch--hhccCCCCCeeccccCccccccCC-------C
Q 042374 617 QLPSSVADTNDLEGLSLYLRNYALNGCLSSLEYLDLSGNDFESLPA--SIKQLSRLRKLHLCYCDKLQSIPE-------L 687 (714)
Q Consensus 617 ~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~l~~~~~~~~lp~-------~ 687 (714)
...+|+|++|++++|+|.++-. .+..+++|+.|++.+||.... +. .
T Consensus 84 ------------------------~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~ 138 (175)
T PF14580_consen 84 ------------------------DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYK 138 (175)
T ss_dssp ------------------------HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH
T ss_pred ------------------------HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHH
Confidence 0136778888888888775533 467899999999999998743 43 3
Q ss_pred cCcccEeecccCc
Q 042374 688 PLSLKWLDASNCE 700 (714)
Q Consensus 688 ~~~L~~L~l~~c~ 700 (714)
.|+|+.||-....
T Consensus 139 lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 139 LPSLKVLDGQDVT 151 (175)
T ss_dssp -TT-SEETTEETT
T ss_pred cChhheeCCEEcc
Confidence 5778888765543
No 39
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.91 E-value=1.1e-08 Score=104.50 Aligned_cols=223 Identities=17% Similarity=0.156 Sum_probs=120.9
Q ss_pred CCCCcccchhhHHHHHhhhcc---cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCL---ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRD 131 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~---~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 131 (714)
....|+|+++.++.+..++.. .......+.++|++|+|||++|+.++++....+. +.. ...... ...+.
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~~~~----~~~l~ 94 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPALEK----PGDLA 94 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-cccccC----hHHHH
Confidence 446699999999998887753 2234567889999999999999999998754321 111 100111 11111
Q ss_pred HHHHHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCCH-HHHHHHhcCCC-------------------CCCCCc
Q 042374 132 EVISQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDGF-TQLESLAGELD-------------------KFTTGS 191 (714)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-~~~~~l~~~l~-------------------~~~~gs 191 (714)
.++.. + ++.-++++|+++... ...+.+...+. ...+.+
T Consensus 95 ~~l~~---------------------l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~ 152 (328)
T PRK00080 95 AILTN---------------------L-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFT 152 (328)
T ss_pred HHHHh---------------------c-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCce
Confidence 22211 1 123355566654320 11111110000 011244
Q ss_pred EEEEEcCChhHHHhc--CCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHhhhhhccCC
Q 042374 192 RIIITTRDKQVLDKC--GVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVLGSSLYQKS 269 (714)
Q Consensus 192 ~IliTtR~~~v~~~~--~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~ 269 (714)
-|..|++...+.... +....+++++++.++..+++.+.+......-+ .+.+..|++.|+|.|-.+..+...+.
T Consensus 153 li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~--~~~~~~ia~~~~G~pR~a~~~l~~~~--- 227 (328)
T PRK00080 153 LIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEID--EEGALEIARRSRGTPRIANRLLRRVR--- 227 (328)
T ss_pred EEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHcCCCchHHHHHHHHHH---
Confidence 566677755433321 22356899999999999999988654322111 25788999999999976555554331
Q ss_pred HHHHHHHHHHHhcCCC---chHHHHHHHhhhcCchhhHhhhh-hcccccc
Q 042374 270 KQQWEDRLHNLRLISE---PNIYKVLKISYDELNSKEKEMFL-DIACFFK 315 (714)
Q Consensus 270 ~~~w~~~l~~l~~~~~---~~~~~~l~ls~~~L~~~~k~~~~-~~~~fp~ 315 (714)
.|..+- .-..... ......+...+..|+...+..+. ....|+.
T Consensus 228 --~~a~~~-~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~ 274 (328)
T PRK00080 228 --DFAQVK-GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGG 274 (328)
T ss_pred --HHHHHc-CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCC
Confidence 111110 0000011 12233344556777777777664 4445543
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=3.6e-10 Score=105.53 Aligned_cols=127 Identities=25% Similarity=0.187 Sum_probs=75.3
Q ss_pred ccccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhcccccccccc
Q 042374 517 SGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNAL 596 (714)
Q Consensus 517 ~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 596 (714)
+.-|+.++|++|.|+.+..+..-.+.++.|++++|.+...- .+..+++|+.|++++|... .+..+-.++-+.+.|.+
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 33566777777777777777777777777777777654332 3566677777777776433 23334445556666677
Q ss_pred CCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc------CCCCCCCCEEECCCCCCcccc
Q 042374 597 GRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL------NGCLSSLEYLDLSGNDFESLP 661 (714)
Q Consensus 597 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~------~~~l~~L~~L~L~~n~l~~lp 661 (714)
+.|.|+++.. ++.+-+|.+|++++|++.. +|++|.|+.+.|.+|.+..+|
T Consensus 360 a~N~iE~LSG---------------L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 360 AQNKIETLSG---------------LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhhHhhhhh---------------hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 7766655432 4455555555555555433 455555555555555554443
No 41
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.89 E-value=1e-08 Score=104.34 Aligned_cols=189 Identities=14% Similarity=0.158 Sum_probs=103.7
Q ss_pred CCcccchhhHHHHHhhhccc---CCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHH
Q 042374 57 DGFVGLNSRIEEVKSLLCLE---SRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEV 133 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~~---~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (714)
..|||++..+++|..++... ......+.++|++|+|||+||+.++++....+. ... . ........ ....
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~---~~~-~---~~~~~~~~-l~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK---ITS-G---PALEKPGD-LAAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE---Eec-c---chhcCchh-HHHH
Confidence 45899999999998888531 233556889999999999999999987754321 111 0 00011111 1111
Q ss_pred HHHHhCCCC-Ccccc-----hhhHHHHHHHhcCCcEEEEEeCCCCCHHHHHHHhcCCCCCCCCcEEEEEcCChhHHHhc-
Q 042374 134 ISQVLGDKN-LKIGT-----LVIHQNIRKRLRQVKMLIVLDAVHDGFTQLESLAGELDKFTTGSRIIITTRDKQVLDKC- 206 (714)
Q Consensus 134 ~~~~~~~~~-~~~~~-----~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~v~~~~- 206 (714)
+..+ +... .-.++ .+..+.+...+.+.+..+|+|+..+. ..+. .. ..+.+-|..|++...+....
T Consensus 76 l~~~-~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~-~~~~---~~---~~~~~li~~t~~~~~l~~~l~ 147 (305)
T TIGR00635 76 LTNL-EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA-RSVR---LD---LPPFTLVGATTRAGMLTSPLR 147 (305)
T ss_pred HHhc-ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccc-ccee---ec---CCCeEEEEecCCccccCHHHH
Confidence 2111 1100 00000 00112233333444444444443332 1111 01 12345566677765443321
Q ss_pred -CCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHhhh
Q 042374 207 -GVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVLGS 263 (714)
Q Consensus 207 -~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 263 (714)
+....+++++++.+|..+++.+.+......- ..+.+..|++.|+|.|-.+..++.
T Consensus 148 sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~--~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 148 DRFGIILRLEFYTVEELAEIVSRSAGLLNVEI--EPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred hhcceEEEeCCCCHHHHHHHHHHHHHHhCCCc--CHHHHHHHHHHhCCCcchHHHHHH
Confidence 2245689999999999999988875332211 125678899999999976655554
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.89 E-value=3.5e-09 Score=112.16 Aligned_cols=142 Identities=31% Similarity=0.344 Sum_probs=66.7
Q ss_pred ecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccc
Q 042374 524 ILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRE 603 (714)
Q Consensus 524 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 603 (714)
+++++.+..+|..++.+++|+.|++++|++ ..+|...+.+++|+.|++++|.+. .+|.....+..|++|.+++|.+..
T Consensus 146 ~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~ 223 (394)
T COG4886 146 DLSDNKIESLPSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIE 223 (394)
T ss_pred cccccchhhhhhhhhccccccccccCCchh-hhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCccee
Confidence 333344444444445555555555555442 233333334455555555554432 233333344445555555553222
Q ss_pred cCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc----CCCCCCCCEEECCCCCCcccchhhccCCCCCeeccccCc
Q 042374 604 LPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL----NGCLSSLEYLDLSGNDFESLPASIKQLSRLRKLHLCYCD 679 (714)
Q Consensus 604 ~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~----~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~~~ 679 (714)
.+.. +..+.++..|.+.+|.+.. .+.+++|++|++++|.++.++. +..+.+|+.|+++++.
T Consensus 224 ~~~~--------------~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 224 LLSS--------------LSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred cchh--------------hhhcccccccccCCceeeeccchhccccccceecccccccccccc-ccccCccCEEeccCcc
Confidence 2221 3444444444444444322 3445556666666666665554 5555566666666555
Q ss_pred ccc
Q 042374 680 KLQ 682 (714)
Q Consensus 680 ~~~ 682 (714)
...
T Consensus 289 ~~~ 291 (394)
T COG4886 289 LSN 291 (394)
T ss_pred ccc
Confidence 443
No 43
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.88 E-value=1.3e-10 Score=111.17 Aligned_cols=230 Identities=19% Similarity=0.148 Sum_probs=147.9
Q ss_pred cccccEEeccCCccccccC-----CCCCCCCCcEEecCCC---CCCccCCc-------cccCCCCCCEEecCCCCCCCcc
Q 042374 426 LLSSKFIDLSHSQYLIRMP-----DLSEAPNLERINLLNC---TNLVSVPS-------SIQNFNHLSMLCFEGCKSLRSF 490 (714)
Q Consensus 426 ~~~L~~L~l~~~~~~~~~~-----~~~~l~~L~~L~L~~~---~~~~~lp~-------~~~~l~~L~~L~l~~~~~~~~~ 490 (714)
...++.++|++|.+...-. .+.+.+.|+..++++- +....+|+ .+...++|++|+||+|-.-...
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 4556666777766543321 2455567777777652 11223343 3445567888888887544333
Q ss_pred CCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceE--------------eccccCCCCCCcEEecCCCCCCcc
Q 042374 491 PSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKE--------------VPSSVGCLTNLKVLSLSQCPRLKR 556 (714)
Q Consensus 491 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~--------------lp~~~~~l~~L~~L~l~~~~~~~~ 556 (714)
+..+ ..+.....+|++|+|.+|.+.. ...-+..-++|+++....|.+-..
T Consensus 109 ~~~l----------------~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 109 IRGL----------------EELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred hHHH----------------HHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 2222 1111112234445555554431 112245567899998888865332
Q ss_pred ----ccccccCCCCCCEEEecCCCCCCC----CchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCC
Q 042374 557 ----ISTSILKLKSLQNLYLIQCFDLEN----FPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDL 628 (714)
Q Consensus 557 ----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L 628 (714)
+...+...+.|+.+.+..|.+... +-..+..+++|+.|++..|.++.-... .+...+..+++|
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~---------~LakaL~s~~~L 243 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV---------ALAKALSSWPHL 243 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH---------HHHHHhcccchh
Confidence 234466778999999998877532 335678899999999999988643321 233347778899
Q ss_pred CceeccCCCcCc----------CCCCCCCCEEECCCCCCc-----ccchhhccCCCCCeeccccCcc
Q 042374 629 EGLSLYLRNYAL----------NGCLSSLEYLDLSGNDFE-----SLPASIKQLSRLRKLHLCYCDK 680 (714)
Q Consensus 629 ~~L~l~~~~~~~----------~~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~l~~~~~ 680 (714)
+.|+++.|.+.. -...|+|+.|.+.+|.++ .+..++...+.|+.|+|++|.+
T Consensus 244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 999999999877 234899999999999987 3455667789999999999987
No 44
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.86 E-value=3e-08 Score=97.52 Aligned_cols=150 Identities=20% Similarity=0.248 Sum_probs=93.0
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKR 157 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (714)
+......+||++|+||||||+.++......|.. ++....-.+-++++++. .-...
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~---------~sAv~~gvkdlr~i~e~----------------a~~~~ 100 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEA---------LSAVTSGVKDLREIIEE----------------ARKNR 100 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHhhCCceEE---------eccccccHHHHHHHHHH----------------HHHHH
Confidence 456677899999999999999999987766542 22222222223333322 11223
Q ss_pred hcCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEE--EcCChhHH---HhcCCCeEEecCCCCHHHHHHHHHHhhh
Q 042374 158 LRQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIII--TTRDKQVL---DKCGVNYVYEVEGLEHNKAFELFYRKAF 231 (714)
Q Consensus 158 l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~Ili--TtR~~~v~---~~~~~~~~~~l~~L~~~~~~~l~~~~~~ 231 (714)
..+++.+|++|+|..- ..+-+.++.. ...|.-|+| ||.++... .......++++++|+.+|..+++.+.+.
T Consensus 101 ~~gr~tiLflDEIHRfnK~QQD~lLp~---vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~ 177 (436)
T COG2256 101 LLGRRTILFLDEIHRFNKAQQDALLPH---VENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALL 177 (436)
T ss_pred hcCCceEEEEehhhhcChhhhhhhhhh---hcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHh
Confidence 3589999999999654 3555666544 456776665 66666421 1224457899999999999999988443
Q ss_pred hcCC-CC---h-hHHHHHHHHHHHhcCCC
Q 042374 232 RQNN-YP---P-DFLGLSLEVVHYARNNP 255 (714)
Q Consensus 232 ~~~~-~~---~-~~~~~~~~i~~~~~g~P 255 (714)
.... .. . --++....+++.++|--
T Consensus 178 ~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 178 DEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred hhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 2211 11 1 11235566667777654
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.83 E-value=2.8e-10 Score=115.46 Aligned_cols=162 Identities=25% Similarity=0.354 Sum_probs=123.7
Q ss_pred ccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCC
Q 042374 519 SVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGR 598 (714)
Q Consensus 519 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 598 (714)
.|+.+.++.|.+..+|..++++..|.+|+|+.|++ ..+|..++.|+ |+.|.+++|+ ...+|..++.+..|..|+.+.
T Consensus 99 ~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~ 175 (722)
T KOG0532|consen 99 SLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSK 175 (722)
T ss_pred HHHHHHHHhccceecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhh
Confidence 46666777788888888888888888888888764 56777777764 7888887765 456788888888888888888
Q ss_pred ccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc----CCCCCCCCEEECCCCCCcccchhhccCCCCCeec
Q 042374 599 TKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL----NGCLSSLEYLDLSGNDFESLPASIKQLSRLRKLH 674 (714)
Q Consensus 599 ~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~----~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 674 (714)
|.+..+|.. ++.+.+|+.|.+..|++.. +..+ .|..||+++|+++.||-.+.++..|++|-
T Consensus 176 nei~slpsq--------------l~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 176 NEIQSLPSQ--------------LGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQ 240 (722)
T ss_pred hhhhhchHH--------------hhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeee
Confidence 888877766 7788888888888887655 3333 58889999999999999999999999999
Q ss_pred cccCccccccCC------CcCcccEeecccC
Q 042374 675 LCYCDKLQSIPE------LPLSLKWLDASNC 699 (714)
Q Consensus 675 l~~~~~~~~lp~------~~~~L~~L~l~~c 699 (714)
|.+|++. +-|. ..-=-++|++.-|
T Consensus 241 LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 241 LENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 9999853 3331 1112366666666
No 46
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.82 E-value=4.9e-08 Score=102.92 Aligned_cols=174 Identities=19% Similarity=0.231 Sum_probs=103.9
Q ss_pred CCCcccchhhHHH---HHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHH
Q 042374 56 LDGFVGLNSRIEE---VKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDE 132 (714)
Q Consensus 56 ~~~~vGr~~~~~~---l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 132 (714)
.+.+||++..+.. +.+++.. .....+.++|++|+||||+|+.+++.....|.. +. ....-....++
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~------a~~~~~~~ir~ 79 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LS------AVTSGVKDLRE 79 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Ee------cccccHHHHHH
Confidence 3568998887665 7777643 345578899999999999999999876544321 11 11111111122
Q ss_pred HHHHHhCCCCCcccchhhHHHHHH-HhcCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEE--EcCChh--HH-Hh
Q 042374 133 VISQVLGDKNLKIGTLVIHQNIRK-RLRQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIII--TTRDKQ--VL-DK 205 (714)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~Ili--TtR~~~--v~-~~ 205 (714)
++.. ... ...+++.++++|+++.. ..+.+.+...+. .|..+++ ||.+.. +. ..
T Consensus 80 ii~~-----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 80 VIEE-----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred HHHH-----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHH
Confidence 2211 111 12457889999999865 344555555443 3444444 344332 11 11
Q ss_pred cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCC-hhHHHHHHHHHHHhcCCChhhHH
Q 042374 206 CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYP-PDFLGLSLEVVHYARNNPLALEV 260 (714)
Q Consensus 206 ~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~i~~~~~g~Plai~~ 260 (714)
......+.+.+++.++..+++.+.+....... .-..+....+++.++|.+..+..
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln 195 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALN 195 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHH
Confidence 22336789999999999999988653311100 11235677889999999876543
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.2e-09 Score=107.61 Aligned_cols=172 Identities=24% Similarity=0.193 Sum_probs=122.3
Q ss_pred ccccccceEecccccceEe---ccccCCCCCCcEEecCCCCCCcccccc-ccCCCCCCEEEecCCCCCC-CCchhhhccc
Q 042374 515 QISGSVTKLILWETAIKEV---PSSVGCLTNLKVLSLSQCPRLKRISTS-ILKLKSLQNLYLIQCFDLE-NFPEILEKME 589 (714)
Q Consensus 515 ~~~~~L~~L~l~~~~i~~l---p~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~ 589 (714)
+..++++.|+|++|-+.+. -.....+++|+.|+++.|.+..-.... -..+++|+.|.+++|.+.. .+-..+..++
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 4455677777777766543 233578999999999999765432222 2357899999999998762 3345567789
Q ss_pred cccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc------CCCCCCCCEEECCCCCCccc--c
Q 042374 590 YLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL------NGCLSSLEYLDLSGNDFESL--P 661 (714)
Q Consensus 590 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~------~~~l~~L~~L~L~~n~l~~l--p 661 (714)
+|+.|++..|....... .....+..|+.|+|++|++.+ .+.+|.|..|+++.|.++++ |
T Consensus 223 sl~~L~L~~N~~~~~~~-------------~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~ 289 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKA-------------TSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEP 289 (505)
T ss_pred cHHHhhhhcccccceec-------------chhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCC
Confidence 99999999985211110 114456789999999999876 56799999999999999854 5
Q ss_pred hh-----hccCCCCCeeccccCcc--ccccCC--CcCcccEeecccC
Q 042374 662 AS-----IKQLSRLRKLHLCYCDK--LQSIPE--LPLSLKWLDASNC 699 (714)
Q Consensus 662 ~~-----l~~l~~L~~L~l~~~~~--~~~lp~--~~~~L~~L~l~~c 699 (714)
+. ...+++|++|++..|+. ..++-. ..++|+.|.+..+
T Consensus 290 d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 290 DVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred CccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 54 45689999999999986 333332 3467777776554
No 48
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.79 E-value=1.2e-09 Score=102.07 Aligned_cols=127 Identities=24% Similarity=0.154 Sum_probs=103.2
Q ss_pred CCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCccc
Q 042374 538 GCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQ 617 (714)
Q Consensus 538 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 617 (714)
...+.|.+++|++|.+ ..+.+++.-++.++.|+++.|.+... ..+..+++|+.|++++|.+..+..+
T Consensus 281 dTWq~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gw---------- 347 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGW---------- 347 (490)
T ss_pred chHhhhhhccccccch-hhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhh----------
Confidence 3346789999999864 55667788889999999999987642 4588899999999999998876544
Q ss_pred CCCccCCCCCCCceeccCCCcCc---CCCCCCCCEEECCCCCCcccc--hhhccCCCCCeeccccCccc
Q 042374 618 LPSSVADTNDLEGLSLYLRNYAL---NGCLSSLEYLDLSGNDFESLP--ASIKQLSRLRKLHLCYCDKL 681 (714)
Q Consensus 618 l~~~~~~~~~L~~L~l~~~~~~~---~~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~l~~~~~~ 681 (714)
-..+-+.+.|.|..|.+.+ ++.+-+|..|++++|+|..+. ..++++|.|+.+.+.+|++.
T Consensus 348 ----h~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 348 ----HLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ----HhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 5567889999999998776 455678999999999998664 36899999999999999964
No 49
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.78 E-value=4.8e-08 Score=89.68 Aligned_cols=181 Identities=19% Similarity=0.171 Sum_probs=99.8
Q ss_pred CCCCCcccchhhHHHHHhhhcc---cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHH
Q 042374 54 TDLDGFVGLNSRIEEVKSLLCL---ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVR 130 (714)
Q Consensus 54 ~~~~~~vGr~~~~~~l~~~l~~---~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 130 (714)
..-++|||.+.-++.+.-++.. ..+....+.+||++|+||||||+-++++....|. +.. ....... .++
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s-g~~i~k~---~dl- 92 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITS-GPAIEKA---GDL- 92 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE-CCC--SC---HHH-
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---ecc-chhhhhH---HHH-
Confidence 3668899999988887655542 2345677889999999999999999998876653 221 0001111 111
Q ss_pred HHHHHHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCC-HHHHHHHhcCCCC--------CCC-----------C
Q 042374 131 DEVISQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG-FTQLESLAGELDK--------FTT-----------G 190 (714)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~--------~~~-----------g 190 (714)
..+...+ +++-+|.+|++... ..+-+.|...+.+ .++ -
T Consensus 93 ---------------------~~il~~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 93 ---------------------AAILTNL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp ---------------------HHHHHT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred ---------------------HHHHHhc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 1111122 24457888999765 2222333222211 111 2
Q ss_pred cEEEEEcCChhHHHhcC--CCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHhhhhhc
Q 042374 191 SRIIITTRDKQVLDKCG--VNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVLGSSLY 266 (714)
Q Consensus 191 s~IliTtR~~~v~~~~~--~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~ 266 (714)
+-|=.|||...+..... .....+++..+.+|-.++..+.+..-.- +-..+.+.+|++.+.|.|--++-+-..++
T Consensus 151 TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i--~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI--EIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 23557888765544432 2345689999999999999877632111 11236789999999999987666655554
No 50
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=7.5e-07 Score=90.97 Aligned_cols=192 Identities=16% Similarity=0.164 Sum_probs=122.9
Q ss_pred CCCCcccchhhHHHHHhhhcc--cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccc--eEEeeechhcccccChHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCL--ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQG--KCFMANVREESNKMGAIHVR 130 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~--~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~~ 130 (714)
.++.+.+|+++++++...|.. ....+.-+.|+|.+|+|||+.++.+++++++.... ++++. +....+..+++
T Consensus 15 iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN----c~~~~t~~~i~ 90 (366)
T COG1474 15 IPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN----CLELRTPYQVL 90 (366)
T ss_pred CcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe----eeeCCCHHHHH
Confidence 456699999999999988864 22333448899999999999999999988765432 57777 55667778888
Q ss_pred HHHHHHHhCCCCCcccchhhHHHHHHHh--cCCcEEEEEeCCCCC--H--HHHHHHhcCCCCCCCCcE--EEEEcCChhH
Q 042374 131 DEVISQVLGDKNLKIGTLVIHQNIRKRL--RQVKMLIVLDAVHDG--F--TQLESLAGELDKFTTGSR--IIITTRDKQV 202 (714)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~--~--~~~~~l~~~l~~~~~gs~--IliTtR~~~v 202 (714)
.+++.++...........+..+.+.+.+ .++.+++|||+++.. . +.+-.|....... .++ ||..+-+..+
T Consensus 91 ~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~ 168 (366)
T COG1474 91 SKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKF 168 (366)
T ss_pred HHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHH
Confidence 9998885432222222233336677776 357899999999765 1 1222333322222 343 3444444433
Q ss_pred HHh--------cCCCeEEecCCCCHHHHHHHHHHhhh---hcCCCChhHHHHHHHHHHHhcC
Q 042374 203 LDK--------CGVNYVYEVEGLEHNKAFELFYRKAF---RQNNYPPDFLGLSLEVVHYARN 253 (714)
Q Consensus 203 ~~~--------~~~~~~~~l~~L~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~i~~~~~g 253 (714)
... .+. ..+..++-+.+|..+++..++- ......++..+++..++..-+|
T Consensus 169 ~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G 229 (366)
T COG1474 169 LDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG 229 (366)
T ss_pred HHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc
Confidence 222 222 3478999999999999988874 3333444444555555555554
No 51
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.72 E-value=1.2e-08 Score=108.05 Aligned_cols=39 Identities=33% Similarity=0.484 Sum_probs=20.7
Q ss_pred cCCCCCCCceeccCCCcCc---CCCCCCCCEEECCCCCCccc
Q 042374 622 VADTNDLEGLSLYLRNYAL---NGCLSSLEYLDLSGNDFESL 660 (714)
Q Consensus 622 ~~~~~~L~~L~l~~~~~~~---~~~l~~L~~L~L~~n~l~~l 660 (714)
+..+++++.|++++|.+.. ++.+.+|+.|++++|.+...
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred hccccccceeccccccccccccccccCccCEEeccCcccccc
Confidence 4444445555555554444 34455666666666655533
No 52
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=1.7e-07 Score=97.32 Aligned_cols=195 Identities=12% Similarity=0.025 Sum_probs=110.3
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
..+++||.+..+..|..++..+. -.+.+.++|+.|+||||+|+.+++.+...-... ... +.....-..+.....
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~-~~p----Cg~C~sC~~i~~g~~ 89 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIG-NEP----CNECTSCLEITKGIS 89 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccC-ccc----cCCCcHHHHHHccCC
Confidence 44568999999999988885432 235688999999999999999998653311000 000 000011111111100
Q ss_pred HHHhCCCCCcccchhhHHHHHHH-----hcCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEE-EEcCChhHHHh-c
Q 042374 135 SQVLGDKNLKIGTLVIHQNIRKR-----LRQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRII-ITTRDKQVLDK-C 206 (714)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~Il-iTtR~~~v~~~-~ 206 (714)
..+..-+.......+..+.+.+. ..++.-++|+|+++.. ...++.|+..+........+| .||....+... .
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 00000000001112222222222 2356679999999876 456778777765433444444 44444444322 2
Q ss_pred CCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChh
Q 042374 207 GVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLA 257 (714)
Q Consensus 207 ~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 257 (714)
...+.|.+.+++.++..+.+.+.+......-. .+....|++.++|.+--
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e--~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENVQYD--QEGLFWIAKKGDGSVRD 218 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCChHHH
Confidence 33467999999999999998887643322111 25678899999998843
No 53
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=1.2e-06 Score=90.64 Aligned_cols=196 Identities=12% Similarity=0.083 Sum_probs=110.6
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
...+++|.+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.+++.+...... . ...+.....-.++.....
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~----~-~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGI----T-SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred chhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCC----C-CCCCCCCHHHHHHhcCCC
Confidence 34568999999999998885432 34677899999999999999999876421100 0 000000000000000000
Q ss_pred HHHhCCCCCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCCh-hHHHh-c
Q 042374 135 SQVLGDKNLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDK-QVLDK-C 206 (714)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~-~v~~~-~ 206 (714)
..+...+.......+..+.+.+.+ .+++-++|+|+++.. ...++.+...+........+|++|.+. .+... .
T Consensus 88 ~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~ 167 (363)
T PRK14961 88 LDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIL 167 (363)
T ss_pred CceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHH
Confidence 000000000001112222232222 245569999999876 235667777666545566677666544 33222 2
Q ss_pred CCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhh
Q 042374 207 GVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLAL 258 (714)
Q Consensus 207 ~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 258 (714)
+....+++++++.++..+.+.+.+......-+ .+.+..|++.++|.|-.+
T Consensus 168 SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~--~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 168 SRCLQFKLKIISEEKIFNFLKYILIKESIDTD--EYALKLIAYHAHGSMRDA 217 (363)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 33468999999999999988876644321111 146678888999988643
No 54
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.70 E-value=3.7e-07 Score=88.46 Aligned_cols=168 Identities=17% Similarity=0.253 Sum_probs=97.8
Q ss_pred chhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCC
Q 042374 62 LNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDK 141 (714)
Q Consensus 62 r~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (714)
.+..++.+.+++.. .....+.|+|++|+|||+||+.++++........+++... ... .....
T Consensus 22 ~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~-~~~------~~~~~--------- 83 (226)
T TIGR03420 22 NAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA-ELA------QADPE--------- 83 (226)
T ss_pred cHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH-HHH------HhHHH---------
Confidence 33456667766532 3356788999999999999999999776554455555411 110 00001
Q ss_pred CCcccchhhHHHHHHHhcCCcEEEEEeCCCCCH--HH-HHHHhcCCCC-CCCCcEEEEEcCChh---------HHHhcCC
Q 042374 142 NLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDGF--TQ-LESLAGELDK-FTTGSRIIITTRDKQ---------VLDKCGV 208 (714)
Q Consensus 142 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~-~~~l~~~l~~-~~~gs~IliTtR~~~---------v~~~~~~ 208 (714)
+.+.+.+ .-+||+||++... .. .+.+...+.. ...+..+|+|++... +......
T Consensus 84 ------------~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~ 150 (226)
T TIGR03420 84 ------------VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAW 150 (226)
T ss_pred ------------HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhc
Confidence 1111222 2389999997541 12 2333332221 123347888887432 1222222
Q ss_pred CeEEecCCCCHHHHHHHHHHhhhhcC-CCChhHHHHHHHHHHHhcCCChhhHHhhh
Q 042374 209 NYVYEVEGLEHNKAFELFYRKAFRQN-NYPPDFLGLSLEVVHYARNNPLALEVLGS 263 (714)
Q Consensus 209 ~~~~~l~~L~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 263 (714)
...+++++++.++...++...+.... ..++ +....+++.+.|+|..+..+..
T Consensus 151 ~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~---~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 151 GLVFQLPPLSDEEKIAALQSRAARRGLQLPD---EVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred CeeEecCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhccCCHHHHHHHHH
Confidence 45799999999999999977653222 1122 4567777788888876655543
No 55
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=2.3e-07 Score=98.96 Aligned_cols=192 Identities=14% Similarity=0.073 Sum_probs=112.4
Q ss_pred CCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhh--cccceEEeeechhcccccChHHHHHHH
Q 042374 56 LDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISR--HFQGKCFMANVREESNKMGAIHVRDEV 133 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (714)
.++++|.+..++.|..++..+. -.+.+.++|++|+||||+|+.+++.+.. .+...+|.+.. +..+..-...-
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s-----c~~i~~~~h~d 86 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES-----CLAVRRGAHPD 86 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh-----hHHHhcCCCCc
Confidence 3458999999999988886432 3466799999999999999999987642 23223443210 00000000000
Q ss_pred HHHHhCCCCCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcC-ChhHHHhc
Q 042374 134 ISQVLGDKNLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTR-DKQVLDKC 206 (714)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR-~~~v~~~~ 206 (714)
+.. ++. ......+..+.+.+.+ .+++-++|+|+++.. ...++.+...+......+.+|++|. ...+....
T Consensus 87 v~e-l~~--~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I 163 (504)
T PRK14963 87 VLE-IDA--ASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTI 163 (504)
T ss_pred eEE-ecc--cccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHH
Confidence 000 000 0011122222233322 345668999999865 3457777777665445555555554 33332222
Q ss_pred -CCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhh
Q 042374 207 -GVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLAL 258 (714)
Q Consensus 207 -~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 258 (714)
.....+++.+++.++..+.+.+.+....... ..+.+..|++.++|.+--+
T Consensus 164 ~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i--~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 164 LSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA--EPEALQLVARLADGAMRDA 214 (504)
T ss_pred hcceEEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 2346799999999999999988765433211 1256788899999988544
No 56
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.68 E-value=1.8e-06 Score=93.35 Aligned_cols=193 Identities=10% Similarity=0.020 Sum_probs=109.0
Q ss_pred CCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHH
Q 042374 56 LDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVIS 135 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (714)
.+++||.+..++.|.+++..+. -.+.+.++|..|+||||+|+.+++.+...-. .-... +..+..-..+...-..
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~-~~~~P----CG~C~sCr~I~~G~h~ 88 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETG-VTSQP----CGVCRACREIDEGRFV 88 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccC-CCCCC----CcccHHHHHHhcCCCc
Confidence 3458999999999999885432 2456779999999999999999986532100 00000 0000000000000000
Q ss_pred HHhCCCCCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCChhHHH--hcC
Q 042374 136 QVLGDKNLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDKQVLD--KCG 207 (714)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~~v~~--~~~ 207 (714)
.++..+..+....+..+.+.+.. .++.-++|||+++.. ...++.|+..+.......++|+||++..-.. ...
T Consensus 89 DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrS 168 (830)
T PRK07003 89 DYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLS 168 (830)
T ss_pred eEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhh
Confidence 00000000001112222222221 245568899999876 3457777776665556778887777654221 123
Q ss_pred CCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCCh
Q 042374 208 VNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPL 256 (714)
Q Consensus 208 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 256 (714)
....+.++.++.++..+.+.+.+..+...-. .+....|++.++|..-
T Consensus 169 RCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id--~eAL~lIA~~A~GsmR 215 (830)
T PRK07003 169 RCLQFNLKQMPAGHIVSHLERILGEERIAFE--PQALRLLARAAQGSMR 215 (830)
T ss_pred heEEEecCCcCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 3467999999999999999887643322111 2556778888888653
No 57
>PF13173 AAA_14: AAA domain
Probab=98.68 E-value=1e-07 Score=82.66 Aligned_cols=120 Identities=17% Similarity=0.173 Sum_probs=76.2
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHhc
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRLR 159 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 159 (714)
.+++.|.|+.|+||||+++.++++.. ....++++. ....... ... . . +..+.+.+...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~----~~~~~~~-~~~-----~------~-----~~~~~~~~~~~ 59 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN----FDDPRDR-RLA-----D------P-----DLLEYFLELIK 59 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec----cCCHHHH-HHh-----h------h-----hhHHHHHHhhc
Confidence 35889999999999999999998765 224455554 1111110 000 0 0 00133333344
Q ss_pred CCcEEEEEeCCCCCHHHHHHHhcCCCCCCCCcEEEEEcCChhHHHh------cCCCeEEecCCCCHHHH
Q 042374 160 QVKMLIVLDAVHDGFTQLESLAGELDKFTTGSRIIITTRDKQVLDK------CGVNYVYEVEGLEHNKA 222 (714)
Q Consensus 160 ~k~~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~v~~~------~~~~~~~~l~~L~~~~~ 222 (714)
+++.++++|++... ..|......+.+..+..+|++|+........ .+....+++.||+..|.
T Consensus 60 ~~~~~i~iDEiq~~-~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYL-PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhh-ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 47789999999887 5666666555544567899999987765532 13345689999998773
No 58
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=9.9e-07 Score=97.31 Aligned_cols=194 Identities=11% Similarity=0.072 Sum_probs=111.0
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcc--cc-eEEeeechhcccccChHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHF--QG-KCFMANVREESNKMGAIHVRD 131 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f--~~-~~~~~~~~~~~~~~~~~~~~~ 131 (714)
....+||.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+.... .. .|..+ ..+..+.....
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C-----~sC~~i~~g~~ 87 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC-----SSCVEIAQGRF 87 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc-----hHHHHHhcCCC
Confidence 34568999999999998885432 245668999999999999999998764320 00 00000 00000000000
Q ss_pred HHHHHHhCCCCCcccchhhHHHHHHH-----hcCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCC-hhHHH
Q 042374 132 EVISQVLGDKNLKIGTLVIHQNIRKR-----LRQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRD-KQVLD 204 (714)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~-~~v~~ 204 (714)
..+.. + +.......+..+.+.+. ..+++-++|+|+++.. ....+.|+..+.......++|++|.+ ..+..
T Consensus 88 ~DviE-i--dAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~ 164 (944)
T PRK14949 88 VDLIE-V--DAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (944)
T ss_pred ceEEE-e--ccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchH
Confidence 00000 0 00000111111222221 2466779999999876 45677777776654556666655544 33332
Q ss_pred h-cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhH
Q 042374 205 K-CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALE 259 (714)
Q Consensus 205 ~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 259 (714)
. ......+++++++.++..+++.+.+-...... ..+.+..|++.++|.|--+.
T Consensus 165 TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~--edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 165 TVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPF--EAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred HHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 2 22346899999999999999987654322111 12567788889999885443
No 59
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.65 E-value=4.8e-08 Score=91.46 Aligned_cols=50 Identities=30% Similarity=0.468 Sum_probs=35.7
Q ss_pred CcccchhhHHHHHhhhc-ccCCCeEEEEEEccCchhHHHHHHHHHHHHhhc
Q 042374 58 GFVGLNSRIEEVKSLLC-LESRDVRIVGIWGMGGIGKTTIASAVFHQISRH 107 (714)
Q Consensus 58 ~~vGr~~~~~~l~~~l~-~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~ 107 (714)
.||||+++++++...+. ....+.+.+.|+|++|+|||+|+++++.++..+
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999995 234557899999999999999999999987776
No 60
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.64 E-value=7e-07 Score=92.49 Aligned_cols=196 Identities=12% Similarity=0.084 Sum_probs=105.3
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcc-c-ceEEeeechhcccccChHHHHHH-H
Q 042374 57 DGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHF-Q-GKCFMANVREESNKMGAIHVRDE-V 133 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f-~-~~~~~~~~~~~~~~~~~~~~~~~-~ 133 (714)
+.++|++..++.+.+++..+ ..+.+.++|++|+||||+|+.+++.+..+. . ..+++......... ...+... .
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQG--KKYLVEDPR 90 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcc--hhhhhcCcc
Confidence 56899999999999988543 334578999999999999999998764332 2 12333311100000 0000000 0
Q ss_pred HHHHhCCC-CCcccchhhHHHHHHHh------cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCCh-hHHH
Q 042374 134 ISQVLGDK-NLKIGTLVIHQNIRKRL------RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDK-QVLD 204 (714)
Q Consensus 134 ~~~~~~~~-~~~~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~-~v~~ 204 (714)
.....+.. .......+..+.+.+.. .+.+-++|+||++.. ......+...+......+++|+|+... .+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~ 170 (337)
T PRK12402 91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIP 170 (337)
T ss_pred hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCch
Confidence 00000000 00000111112211111 133458999999765 223344444443334456777776543 2222
Q ss_pred h-cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhh
Q 042374 205 K-CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLAL 258 (714)
Q Consensus 205 ~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 258 (714)
. ......+++.+++.++...++.+.+......- ..+.+..+++.++|.+-.+
T Consensus 171 ~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~--~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 171 PIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDY--DDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred hhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 2 22335788999999999999988764332211 1256778888888876544
No 61
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=1.4e-06 Score=93.28 Aligned_cols=192 Identities=13% Similarity=0.056 Sum_probs=110.7
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
..+.+||.+...+.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+.... +.... .+..+. ..+.+.
T Consensus 13 tFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~----~~~~~-pCg~C~----sC~~I~ 82 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCET----GVTST-PCEVCA----TCKAVN 82 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCc----CCCCC-CCccCH----HHHHHh
Confidence 34568999999999999886432 246788999999999999999998753211 11000 000000 000000
Q ss_pred HH----HhCCCCCcccchhhHHHHHHH-----hcCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCChh-HH
Q 042374 135 SQ----VLGDKNLKIGTLVIHQNIRKR-----LRQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDKQ-VL 203 (714)
Q Consensus 135 ~~----~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~~-v~ 203 (714)
.. +..-+.......+..+.+.+. ..++.-++|+|+++.. ....+.+...+.....+..+|++|.+.. +.
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 00 000000000112222222221 2356678999999875 3456667666655445667777766543 22
Q ss_pred -HhcCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhh
Q 042374 204 -DKCGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLAL 258 (714)
Q Consensus 204 -~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 258 (714)
........+++++++.++..+.+.+.+......-. .+....|++.++|.+-.+
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id--~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD--QDAIWQIAESAQGSLRDA 216 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 11234468999999999999998877644332111 145677888888877443
No 62
>PRK08727 hypothetical protein; Validated
Probab=98.63 E-value=1.1e-06 Score=84.88 Aligned_cols=147 Identities=14% Similarity=0.100 Sum_probs=87.9
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHhcC
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRLRQ 160 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 160 (714)
..+.|+|.+|+|||+|++.+++...++...+.|+.. .. ......+ ..+.+ .
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~----~~---~~~~~~~---------------------~~~~l-~ 92 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL----QA---AAGRLRD---------------------ALEAL-E 92 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH----HH---hhhhHHH---------------------HHHHH-h
Confidence 458999999999999999999987766556667651 10 0000111 11112 2
Q ss_pred CcEEEEEeCCCCC--HHHHH-HHhcCCCC-CCCCcEEEEEcCChh---------HHHhcCCCeEEecCCCCHHHHHHHHH
Q 042374 161 VKMLIVLDAVHDG--FTQLE-SLAGELDK-FTTGSRIIITTRDKQ---------VLDKCGVNYVYEVEGLEHNKAFELFY 227 (714)
Q Consensus 161 k~~LlVlDdv~~~--~~~~~-~l~~~l~~-~~~gs~IliTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~l~~ 227 (714)
+.-+||+||++.. ...+. .+...+.. ..+|..||+|++... +...+.....+++++++.++..+++.
T Consensus 93 ~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~ 172 (233)
T PRK08727 93 GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLR 172 (233)
T ss_pred cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHH
Confidence 3358999999643 12222 22222211 134667999998432 12222334689999999999999999
Q ss_pred HhhhhcCCCChhHHHHHHHHHHHhcCCChhh
Q 042374 228 RKAFRQNNYPPDFLGLSLEVVHYARNNPLAL 258 (714)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 258 (714)
+++....-.-+ .+....|++.+.|..-.+
T Consensus 173 ~~a~~~~l~l~--~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 173 ERAQRRGLALD--EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHcCCCCC--HHHHHHHHHhCCCCHHHH
Confidence 87754322111 256677777777655443
No 63
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.61 E-value=2.2e-09 Score=102.90 Aligned_cols=234 Identities=16% Similarity=0.139 Sum_probs=117.1
Q ss_pred CCCCCCCcEEecCCCCCCcc----CCccccCCCCCCEEecCCCCC---CCccCCCCCCCCCcEEEeCCCcCCCccccccc
Q 042374 446 LSEAPNLERINLLNCTNLVS----VPSSIQNFNHLSMLCFEGCKS---LRSFPSNLHFVCPVTINCGGCVNLTEFPQISG 518 (714)
Q Consensus 446 ~~~l~~L~~L~L~~~~~~~~----lp~~~~~l~~L~~L~l~~~~~---~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 518 (714)
...+..+..++|++|+.-.. +.+.+.+.+.|+..++++-.. ...+|..+. .+...-...+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~-------------~l~~aL~~~~ 92 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALK-------------MLSKALLGCP 92 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHH-------------HHHHHHhcCC
Confidence 45667788888888765432 234456666777777765210 001111110 0000001112
Q ss_pred ccceEecccccce-----EeccccCCCCCCcEEecCCCCCCcc-------------ccccccCCCCCCEEEecCCCCCC-
Q 042374 519 SVTKLILWETAIK-----EVPSSVGCLTNLKVLSLSQCPRLKR-------------ISTSILKLKSLQNLYLIQCFDLE- 579 (714)
Q Consensus 519 ~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~-------------~~~~~~~l~~L~~L~l~~~~~~~- 579 (714)
.|++|+|+.|-+. .+-.-+..+..|++|.|.+|.+... ...-++.-+.|+++....|+...
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 4444444444333 1111234455666666666544211 01112333456666555554321
Q ss_pred ---CCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc---------CCCCCCC
Q 042374 580 ---NFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL---------NGCLSSL 647 (714)
Q Consensus 580 ---~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~---------~~~l~~L 647 (714)
.+...|...+.|+.+.+..|.|..-.. ..+...+..+++|+.|+|..|.++. +..+++|
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~---------~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGV---------TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchh---------HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence 122335555566666666555532111 1223336677777777777777655 4456677
Q ss_pred CEEECCCCCCc-----ccchhh-ccCCCCCeeccccCccccccC-------CCcCcccEeecccCcc
Q 042374 648 EYLDLSGNDFE-----SLPASI-KQLSRLRKLHLCYCDKLQSIP-------ELPLSLKWLDASNCER 701 (714)
Q Consensus 648 ~~L~L~~n~l~-----~lp~~l-~~l~~L~~L~l~~~~~~~~lp-------~~~~~L~~L~l~~c~~ 701 (714)
+.|+++.|.++ .+-..+ ...|+|++|.+.+|.+...=- .-.+.|..|++++|..
T Consensus 244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 77777777665 222222 346777777777776542111 0146788888888743
No 64
>PLN03025 replication factor C subunit; Provisional
Probab=98.60 E-value=9.4e-07 Score=89.96 Aligned_cols=180 Identities=13% Similarity=0.153 Sum_probs=103.6
Q ss_pred CCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhh-cccceEE-eeechhcccccChHHHHHHH
Q 042374 56 LDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISR-HFQGKCF-MANVREESNKMGAIHVRDEV 133 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~-~f~~~~~-~~~~~~~~~~~~~~~~~~~~ 133 (714)
-..++|.+..++.|.+++..+ ..+.+.++|++|+||||+|+.+++.+.. .|...+. +. .+...+. +..++.
T Consensus 12 l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln----~sd~~~~-~~vr~~ 84 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN----ASDDRGI-DVVRNK 84 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec----ccccccH-HHHHHH
Confidence 345789888888888877543 3445779999999999999999997633 2321111 11 1111111 122222
Q ss_pred HHHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCCh-hHHHh-cCCCe
Q 042374 134 ISQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDK-QVLDK-CGVNY 210 (714)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~-~v~~~-~~~~~ 210 (714)
+........ . .-.++.-++|+|+++.. ....+.+...+......+++++++... .+... .....
T Consensus 85 i~~~~~~~~-~------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 85 IKMFAQKKV-T------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHhccc-c------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 222100000 0 00134668999999876 233445544444334566777766443 22111 12235
Q ss_pred EEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChh
Q 042374 211 VYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLA 257 (714)
Q Consensus 211 ~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 257 (714)
.+++++++.++..+.+.+.+....-.-+ .+....|++.++|..-.
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~i~--~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPYV--PEGLEAIIFTADGDMRQ 196 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHH
Confidence 7899999999999998887644332111 24667888888887643
No 65
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.60 E-value=1.7e-06 Score=82.34 Aligned_cols=178 Identities=15% Similarity=0.205 Sum_probs=95.4
Q ss_pred cccchhh--HHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhccc--ceEEeeechhcccccChHHHHHHHH
Q 042374 59 FVGLNSR--IEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQ--GKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 59 ~vGr~~~--~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
++|-..+ ......+..........+.|+|..|+|||.|++.+++++.+... .++|+. ..+....+.
T Consensus 11 v~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~~~~ 80 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIREFA 80 (219)
T ss_dssp --TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHHHHH
Confidence 3565443 22333333332333456889999999999999999998765433 344554 223333333
Q ss_pred HHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCC--HHHHH-HHhcCCCC-CCCCcEEEEEcCChh---------
Q 042374 135 SQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG--FTQLE-SLAGELDK-FTTGSRIIITTRDKQ--------- 201 (714)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~-~l~~~l~~-~~~gs~IliTtR~~~--------- 201 (714)
..+... ....+++.+++-. ++++||++.. ...|+ .+...+.. ...|-+||+|++...
T Consensus 81 ~~~~~~---------~~~~~~~~~~~~D-lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~ 150 (219)
T PF00308_consen 81 DALRDG---------EIEEFKDRLRSAD-LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPD 150 (219)
T ss_dssp HHHHTT---------SHHHHHHHHCTSS-EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HH
T ss_pred HHHHcc---------cchhhhhhhhcCC-EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChh
Confidence 332221 1144555555444 7889999654 12222 22222211 134668999996432
Q ss_pred HHHhcCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhh
Q 042374 202 VLDKCGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLAL 258 (714)
Q Consensus 202 v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 258 (714)
+...+....++++++.+.++..+++.+.+....-.- -++++..|++.+.+..-.+
T Consensus 151 L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l--~~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 151 LRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIEL--PEEVIEYLARRFRRDVREL 205 (219)
T ss_dssp HHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S---HHHHHHHHHHTTSSHHHH
T ss_pred hhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHhhcCCHHHH
Confidence 222334456899999999999999998875433221 1256666776666554433
No 66
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.59 E-value=2.3e-07 Score=81.21 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=70.9
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhc-----ccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhH-H
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRH-----FQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIH-Q 152 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 152 (714)
+.+.+.|+|.+|+|||++++.++++.... -..++|+. .....+...+..+++.++ +.........+.. +
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l-~~~~~~~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEAL-GLPLKSRQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHH-T-SSSSTS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHh-CccccccCCHHHHHH
Confidence 35688999999999999999999976543 24455665 344447788888888884 4333332333333 7
Q ss_pred HHHHHhcCCc-EEEEEeCCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCC
Q 042374 153 NIRKRLRQVK-MLIVLDAVHDG--FTQLESLAGELDKFTTGSRIIITTRD 199 (714)
Q Consensus 153 ~l~~~l~~k~-~LlVlDdv~~~--~~~~~~l~~~l~~~~~gs~IliTtR~ 199 (714)
.+.+.+...+ .+||+|+++.. ...++.+..... ..+.+||+..+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 7777775444 59999999653 133444433322 566677777665
No 67
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=2e-06 Score=91.80 Aligned_cols=197 Identities=10% Similarity=0.054 Sum_probs=111.5
Q ss_pred CCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcc-cceEEeeechhcccccChHHHHHHHH
Q 042374 56 LDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHF-QGKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
.+++||-+..++.|.+++..+. -.+.+.++|..|+||||+|+.+++.+...- +..--+. ......-...+.+.
T Consensus 15 FddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-----~~PCG~C~sC~~I~ 88 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-----AQPCGQCRACTEID 88 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-----CCCCcccHHHHHHH
Confidence 3458999999999999885432 245678999999999999999998653210 0000000 00000000000000
Q ss_pred H----HHhCCCCCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcC-ChhHH
Q 042374 135 S----QVLGDKNLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTR-DKQVL 203 (714)
Q Consensus 135 ~----~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR-~~~v~ 203 (714)
. .++..+.......+..+.+.+.+ .++.-++|+|+++.. ....+.|+..+.....++.+|++|. ...+.
T Consensus 89 aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 0 00000000111122222222221 355679999999876 4567778777765555666555544 44443
Q ss_pred Hh-cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHH
Q 042374 204 DK-CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEV 260 (714)
Q Consensus 204 ~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 260 (714)
.- ......+.++.++.++..+.+.+.+..+..... .+....|++.++|.|..+..
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d--~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE--VNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHH
Confidence 22 222467999999999999988877543322111 24567889999999965433
No 68
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=2.4e-06 Score=88.18 Aligned_cols=187 Identities=9% Similarity=-0.001 Sum_probs=107.0
Q ss_pred CCcccchhhHHHHHhhhcccCC--------CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHH
Q 042374 57 DGFVGLNSRIEEVKSLLCLESR--------DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIH 128 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~~~~--------~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 128 (714)
+.++|-+..++.|.+++..+.. -.+.+.++|++|+|||++|+.++..+-..... +-. +..+ .
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~~~----Cg~C----~ 74 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--EPG----CGEC----R 74 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--CCC----CCCC----H
Confidence 4589999999999998865421 25678899999999999999999865322110 000 0000 0
Q ss_pred HHHHHHHHH------hCCCCCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEE
Q 042374 129 VRDEVISQV------LGDKNLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIIT 196 (714)
Q Consensus 129 ~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliT 196 (714)
.-+.+...- .... ...-..+.++.+.+.. .+++-++|+|+++.. ....+.+...+....+++.+|++
T Consensus 75 ~C~~~~~~~hpD~~~i~~~-~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~ 153 (394)
T PRK07940 75 ACRTVLAGTHPDVRVVAPE-GLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLC 153 (394)
T ss_pred HHHHHhcCCCCCEEEeccc-cccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEE
Confidence 000000000 0000 0001111222232322 244558888999865 24456666666554556666666
Q ss_pred cCCh-hHHHh-cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHh
Q 042374 197 TRDK-QVLDK-CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVL 261 (714)
Q Consensus 197 tR~~-~v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 261 (714)
|.+. .+... ......+.+++++.++..+.+.+.. + .+ .+.+..++..++|.|..+..+
T Consensus 154 a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~---~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 154 APSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G---VD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred ECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C---CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 5554 33322 2334689999999999998886432 1 11 145678899999999755444
No 69
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=3e-06 Score=86.11 Aligned_cols=177 Identities=15% Similarity=0.161 Sum_probs=110.0
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHh------hcccceEEeeechhcccccChHHHH
Q 042374 57 DGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQIS------RHFQGKCFMANVREESNKMGAIHVR 130 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~------~~f~~~~~~~~~~~~~~~~~~~~~~ 130 (714)
..++|-+..++.+.+.+..+ .-.+...++|+.|+||||+|+.+++.+- .|.+...|.. . ......+.+ +
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~--~~~~i~v~~-i 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-I--NKKSIGVDD-I 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-c--cCCCCCHHH-H
Confidence 45789998899999988543 2356778999999999999999998652 2333223322 0 001111111 2
Q ss_pred HHHHHHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCChhHH-H-hcC
Q 042374 131 DEVISQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDKQVL-D-KCG 207 (714)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~~v~-~-~~~ 207 (714)
+++...+.. .-..+++-++|+|+++.. ...++.+...+....+++.+|++|.+.+.. . ...
T Consensus 79 r~~~~~~~~----------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 79 RNIIEEVNK----------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred HHHHHHHhc----------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 222221100 011244557777777543 367888888888767788888888765422 1 123
Q ss_pred CCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHH
Q 042374 208 VNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEV 260 (714)
Q Consensus 208 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 260 (714)
..+.+++.++++++....+.+... . .+ .+.+..++..++|.|..+..
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~~-~--~~---~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKYN-D--IK---EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHhc-C--CC---HHHHHHHHHHcCCCHHHHHH
Confidence 346899999999999888765531 1 11 13466788899998875543
No 70
>PRK04195 replication factor C large subunit; Provisional
Probab=98.54 E-value=1.8e-06 Score=93.09 Aligned_cols=177 Identities=16% Similarity=0.173 Sum_probs=106.7
Q ss_pred CCCcccchhhHHHHHhhhcc--cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHH
Q 042374 56 LDGFVGLNSRIEEVKSLLCL--ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEV 133 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~--~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (714)
...++|.++.++.+.+++.. .....+.+.|+|++|+||||+|+.+++++. ++ .+-+. .+. ......+.++
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~-~ieln----asd-~r~~~~i~~~ 84 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WE-VIELN----ASD-QRTADVIERV 84 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEc----ccc-cccHHHHHHH
Confidence 34589999999999988853 222367899999999999999999998763 22 12222 121 1122233333
Q ss_pred HHHHhCCCCCcccchhhHHHHHHHhc-CCcEEEEEeCCCCCH-----HHHHHHhcCCCCCCCCcEEEEEcCChh-HH--H
Q 042374 134 ISQVLGDKNLKIGTLVIHQNIRKRLR-QVKMLIVLDAVHDGF-----TQLESLAGELDKFTTGSRIIITTRDKQ-VL--D 204 (714)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~-----~~~~~l~~~l~~~~~gs~IliTtR~~~-v~--~ 204 (714)
+....... .+. .++-+||+|+++... ..+..+...+. ..+..||+|+.+.. .. .
T Consensus 85 i~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 85 AGEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HHHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhh
Confidence 33211110 111 367799999997641 23455544443 23345666664332 11 1
Q ss_pred hcCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhH
Q 042374 205 KCGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALE 259 (714)
Q Consensus 205 ~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 259 (714)
.......+++++++.++....+.+.+......-+ .+....|++.++|..-.+.
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~--~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD--DEALKEIAERSGGDLRSAI 200 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHH
Confidence 1223467899999999999998877644332111 2567888888888765543
No 71
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=3e-06 Score=90.62 Aligned_cols=195 Identities=11% Similarity=0.030 Sum_probs=107.3
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
....+||-+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+..... .... .+..+ .....+.
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~----~~~~-pCg~C----~sC~~i~ 83 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTG----VTAE-PCNKC----ENCVAIN 83 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCC----CCCC-CCccc----HHHHHHh
Confidence 34568999999999998885432 2456789999999999999999986532110 0000 00000 0000000
Q ss_pred H----HHhCCCCCcccchhhHHHHHHH-----hcCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEE-EEcCChhHH
Q 042374 135 S----QVLGDKNLKIGTLVIHQNIRKR-----LRQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRII-ITTRDKQVL 203 (714)
Q Consensus 135 ~----~~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~Il-iTtR~~~v~ 203 (714)
. .+..-+.......+..+.+.+. ..+++-++|+|+++.. ....+.|+..+......+.+| +||....+.
T Consensus 84 ~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil 163 (546)
T PRK14957 84 NNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIP 163 (546)
T ss_pred cCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhh
Confidence 0 0000000000001111112111 2356679999999765 345677777666544555555 454433333
Q ss_pred Hh-cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCCh-hhHHh
Q 042374 204 DK-CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPL-ALEVL 261 (714)
Q Consensus 204 ~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 261 (714)
.. ......+++.+++.++..+.+.+.+-...-.. -......|++.++|.+- |+..+
T Consensus 164 ~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~--e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 164 VTILSRCIQLHLKHISQADIKDQLKIILAKENINS--DEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred hhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 22 23347899999999999888877653322111 12456778888888664 43333
No 72
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.52 E-value=7.2e-06 Score=84.19 Aligned_cols=181 Identities=17% Similarity=0.133 Sum_probs=103.9
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHH
Q 042374 57 DGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQ 136 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (714)
..++|++..++.+..++..+ ..+.+.++|++|+||||+|+.++++.........++... .+..... ....+.+.+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~--~~~~~~~-~~~~~~i~~ 91 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELN--ASDERGI-DVIRNKIKE 91 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEec--cccccch-HHHHHHHHH
Confidence 45899999999999988543 334579999999999999999998764321111122100 0111111 111122211
Q ss_pred HhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCCh-hHHH-hcCCCeEEe
Q 042374 137 VLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDK-QVLD-KCGVNYVYE 213 (714)
Q Consensus 137 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~-~v~~-~~~~~~~~~ 213 (714)
+...... ....+-++++|+++.. ......+...+......+.+|+++... .+.. .......++
T Consensus 92 ~~~~~~~--------------~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~ 157 (319)
T PRK00440 92 FARTAPV--------------GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFR 157 (319)
T ss_pred HHhcCCC--------------CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheee
Confidence 1110000 0123568999999765 233445555444444556677766432 1211 112234689
Q ss_pred cCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhh
Q 042374 214 VEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLAL 258 (714)
Q Consensus 214 l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 258 (714)
+++++.++....+...+......- ..+.+..+++.++|.+--+
T Consensus 158 ~~~l~~~ei~~~l~~~~~~~~~~i--~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 158 FSPLKKEAVAERLRYIAENEGIEI--TDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred eCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 999999999999888765333211 1256778888899887553
No 73
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.52 E-value=9.8e-07 Score=79.12 Aligned_cols=124 Identities=19% Similarity=0.266 Sum_probs=70.8
Q ss_pred ccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhC
Q 042374 60 VGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLG 139 (714)
Q Consensus 60 vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (714)
+|++..++.+...+... ..+.+.|+|++|+|||++++.+++.+...-..++++.. ......... ...... .
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~----~~~~~~~~~-~~~~~~-~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNA----SDLLEGLVV-AELFGH-F- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEeh----hhhhhhhHH-HHHhhh-h-
Confidence 47888888888887542 35678899999999999999999987543344555541 111111110 000000 0
Q ss_pred CCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCC----HHHHHHHhcCCCCC---CCCcEEEEEcCChh
Q 042374 140 DKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG----FTQLESLAGELDKF---TTGSRIIITTRDKQ 201 (714)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----~~~~~~l~~~l~~~---~~gs~IliTtR~~~ 201 (714)
............++.++|+||++.. ...+.......... ..+..||+|+....
T Consensus 72 ---------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ---------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ---------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001112223456789999999853 12233333333221 35778888888653
No 74
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.52 E-value=1.3e-06 Score=93.31 Aligned_cols=189 Identities=13% Similarity=0.048 Sum_probs=106.5
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
....++|++..++.+.+++..+. -.+.+.++|+.|+||||+|+.+++.+... -|... ..+..+ ...+.+.
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~----~~~~~-~~Cg~C----~sCr~i~ 83 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCL----NPKDG-DCCNSC----SVCESIN 83 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCC----CCCCC-CCCccc----HHHHHHH
Confidence 44568999999999999885432 24678899999999999999999876321 11110 000000 0111111
Q ss_pred HHH----hCCCCCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEc-CChhHH
Q 042374 135 SQV----LGDKNLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITT-RDKQVL 203 (714)
Q Consensus 135 ~~~----~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTt-R~~~v~ 203 (714)
... ..-+.......+..+.+.+.. .+++-++|+|+++.. ...++.|...+......+.+|++| ....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 000 000000001112222222221 233447999999764 245666766655444455555444 433343
Q ss_pred Hh-cCCCeEEecCCCCHHHHHHHHHHhhhhcCC-CChhHHHHHHHHHHHhcCCCh
Q 042374 204 DK-CGVNYVYEVEGLEHNKAFELFYRKAFRQNN-YPPDFLGLSLEVVHYARNNPL 256 (714)
Q Consensus 204 ~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~Pl 256 (714)
.. ......+++.+++.++....+...+..... .+ .+.+..+++.++|.+-
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR 215 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLR 215 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHH
Confidence 22 233467999999999999988877643321 22 2457788889999765
No 75
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=3.8e-06 Score=88.98 Aligned_cols=201 Identities=15% Similarity=0.071 Sum_probs=106.1
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
..+++||.+...+.|..++..+. -.+.+.++|++|+||||+|+.+++.+...=. .-+.. +.....-..+...-.
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~-~~~~p----c~~c~~c~~i~~g~~ 85 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENR-KGVEP----CNECRACRSIDEGTF 85 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccC-CCCCC----CcccHHHHHHhcCCC
Confidence 44669999988888888775432 2356789999999999999999986532100 00000 000000000000000
Q ss_pred HHHhCCCCCcccchhhHHHHHHH-----hcCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEE-EcCChhHHHhc-
Q 042374 135 SQVLGDKNLKIGTLVIHQNIRKR-----LRQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIII-TTRDKQVLDKC- 206 (714)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~Ili-TtR~~~v~~~~- 206 (714)
.....-+.......+..+.+.+. ..+++-++|+|+++.. ....+.+...+........+|+ |+....+....
T Consensus 86 ~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~ 165 (472)
T PRK14962 86 MDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTII 165 (472)
T ss_pred CccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHh
Confidence 00000000000011111222222 2345679999999765 2445666666554333444444 44333343322
Q ss_pred CCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCC-ChhhHHhhh
Q 042374 207 GVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNN-PLALEVLGS 263 (714)
Q Consensus 207 ~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~~ 263 (714)
.....+++.+++.++....+.+.+......-. .+....|++.++|. +.++..+-.
T Consensus 166 SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~--~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 166 SRCQVIEFRNISDELIIKRLQEVAEAEGIEID--REALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred cCcEEEEECCccHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 33468999999999999998887643321111 25667788877655 455555543
No 76
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.50 E-value=5e-06 Score=88.42 Aligned_cols=193 Identities=12% Similarity=0.072 Sum_probs=110.6
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhccc--c-eEEeeechhcccccChHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQ--G-KCFMANVREESNKMGAIHVRD 131 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~--~-~~~~~~~~~~~~~~~~~~~~~ 131 (714)
....+||-+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+...-. . ..+.. +..+. ...
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~----C~~C~----~C~ 89 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT----CEQCT----NCI 89 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC----CCCCh----HHH
Confidence 34568999999999888775432 2467889999999999999999986532110 0 00000 00000 000
Q ss_pred HHHHH----HhCCCCCcccchhhHHHHHHH-----hcCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEE-EEcCCh
Q 042374 132 EVISQ----VLGDKNLKIGTLVIHQNIRKR-----LRQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRII-ITTRDK 200 (714)
Q Consensus 132 ~~~~~----~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~Il-iTtR~~ 200 (714)
.+... +..-+.......+..+.+.+. ..+++-++|+|+++.. ...++.|...+....+.+.+| +||+..
T Consensus 90 ~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~ 169 (507)
T PRK06645 90 SFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQ 169 (507)
T ss_pred HHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChH
Confidence 00000 000000001112222222222 2356778999999875 355777777766545555555 455544
Q ss_pred hHHHhc-CCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhh
Q 042374 201 QVLDKC-GVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLAL 258 (714)
Q Consensus 201 ~v~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 258 (714)
.+.... .....+++.+++.++..+.+.+.+......-. .+....|++.++|.+--+
T Consensus 170 kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie--~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 170 KIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD--IEALRIIAYKSEGSARDA 226 (507)
T ss_pred HhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 444332 23467999999999999999888754332111 245677888899877433
No 77
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=5.3e-06 Score=90.18 Aligned_cols=193 Identities=12% Similarity=0.073 Sum_probs=110.7
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
...++||.+..++.|.+.+..+. -.+.+.++|+.|+||||+|+.+++.+..... +. ......-...+++.
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~----~~-----~~pCg~C~~C~~i~ 83 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETG----IT-----ATPCGECDNCREIE 83 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccC----CC-----CCCCCCCHHHHHHH
Confidence 34568999999999998886432 2456789999999999999999986533210 00 00000001111111
Q ss_pred HH----HhCCCCCcccchhhHHHHHHH-----hcCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCC-hhHH
Q 042374 135 SQ----VLGDKNLKIGTLVIHQNIRKR-----LRQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRD-KQVL 203 (714)
Q Consensus 135 ~~----~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~-~~v~ 203 (714)
.. +..-+.......+..+.+.+. ..+++-++|+|+++.. ....+.|+..+.......++|++|.+ ..+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 00 000000000112222222222 2456679999999866 35677777766554455555555444 4333
Q ss_pred Hh-cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhH
Q 042374 204 DK-CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALE 259 (714)
Q Consensus 204 ~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 259 (714)
.. ......+.+++++.++..+.+.+.+-......+ ......|++.++|.+--+.
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e--~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE--PRALQLLARAADGSMRDAL 218 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHH
Confidence 22 223478999999999999999876533221111 2456788889999876443
No 78
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.49 E-value=2.4e-06 Score=89.18 Aligned_cols=195 Identities=12% Similarity=0.051 Sum_probs=108.5
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
....+||.+..++.+.+++..+. -.+.+.++|++|+||||+|+.+++.+... ...-+-. +.....- ..+.
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~-~~~~~~~----c~~c~~c----~~~~ 81 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQ-NGPDGEP----CNECESC----KEIN 81 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCC-CCCCCCC----CCCCHHH----HHHh
Confidence 34568999999999998885432 34678899999999999999999875421 0000000 0000000 0000
Q ss_pred HH----HhCCCCCcccchhhHHHHHHH-----hcCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCChh-HH
Q 042374 135 SQ----VLGDKNLKIGTLVIHQNIRKR-----LRQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDKQ-VL 203 (714)
Q Consensus 135 ~~----~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~~-v~ 203 (714)
.. +..-........+..+.+.+. ..+++-++|+|+++.. ....+.+...+......+.+|++|.+.. +.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~ 161 (355)
T TIGR02397 82 SGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIP 161 (355)
T ss_pred cCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHH
Confidence 00 000000000011111122221 1244558899998754 2345666666654445666666665443 22
Q ss_pred Hh-cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHh
Q 042374 204 DK-CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVL 261 (714)
Q Consensus 204 ~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 261 (714)
.. ......+++.+++.++..+++...+-.....-+ .+.+..+++.++|.|..+...
T Consensus 162 ~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~--~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 162 ATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE--DEALELIARAADGSLRDALSL 218 (355)
T ss_pred HHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCChHHHHHH
Confidence 22 223457899999999999999887643322111 256778889999988655433
No 79
>PRK05642 DNA replication initiation factor; Validated
Probab=98.48 E-value=3.7e-06 Score=81.09 Aligned_cols=148 Identities=15% Similarity=0.275 Sum_probs=87.9
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHhcC
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRLRQ 160 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 160 (714)
..+.|+|..|+|||.|++.+++.+..+-..++|+.. . ++.. . ...+.+.+.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~----~------~~~~----~--------------~~~~~~~~~~ 97 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL----A------ELLD----R--------------GPELLDNLEQ 97 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH----H------HHHh----h--------------hHHHHHhhhh
Confidence 568899999999999999999877655455666651 1 1110 0 0122233332
Q ss_pred CcEEEEEeCCCCC--HHHHHH-HhcCCCC-CCCCcEEEEEcCChh---------HHHhcCCCeEEecCCCCHHHHHHHHH
Q 042374 161 VKMLIVLDAVHDG--FTQLES-LAGELDK-FTTGSRIIITTRDKQ---------VLDKCGVNYVYEVEGLEHNKAFELFY 227 (714)
Q Consensus 161 k~~LlVlDdv~~~--~~~~~~-l~~~l~~-~~~gs~IliTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~l~~ 227 (714)
-. ++|+||+... ...|+. +...+.. ...|..||+|++... +...+....++++.+++.++..+++.
T Consensus 98 ~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 YE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred CC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 23 6789999632 123332 3332221 234667888887432 11122334678999999999999998
Q ss_pred HhhhhcCCCChhHHHHHHHHHHHhcCCChhhH
Q 042374 228 RKAFRQNNYPPDFLGLSLEVVHYARNNPLALE 259 (714)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 259 (714)
.++....-.-+ .++...+++.+.|..-.+.
T Consensus 177 ~ka~~~~~~l~--~ev~~~L~~~~~~d~r~l~ 206 (234)
T PRK05642 177 LRASRRGLHLT--DEVGHFILTRGTRSMSALF 206 (234)
T ss_pred HHHHHcCCCCC--HHHHHHHHHhcCCCHHHHH
Confidence 76644321111 2567777777777654443
No 80
>PTZ00202 tuzin; Provisional
Probab=98.48 E-value=1.3e-05 Score=80.88 Aligned_cols=162 Identities=17% Similarity=0.131 Sum_probs=98.1
Q ss_pred CCCCcccchhhHHHHHhhhccc-CCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLE-SRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEV 133 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~-~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (714)
+.+.|+||+.++..|...+... ....+++.|.|++|+|||||++.+..... ..+++.+. . +..+.++.+
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNp-----r-g~eElLr~L 329 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDV-----R-GTEDTLRSV 329 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECC-----C-CHHHHHHHH
Confidence 5789999999999999999643 23356999999999999999999997553 22444322 2 568888888
Q ss_pred HHHHhCCCCCcccchhhHHHHHHHh-----c-CCcEEEEEe--CCCCCHHHHHHHhcCCCCCCCCcEEEEEcCChhHHHh
Q 042374 134 ISQVLGDKNLKIGTLVIHQNIRKRL-----R-QVKMLIVLD--AVHDGFTQLESLAGELDKFTTGSRIIITTRDKQVLDK 205 (714)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~l~~~l-----~-~k~~LlVlD--dv~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~v~~~ 205 (714)
+.+ +|... .....+..+.|.+.+ . +++.+||+- +-.+......+... +-..-.-|+|++----+.+-..
T Consensus 330 L~A-LGV~p-~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~-la~drr~ch~v~evpleslt~~ 406 (550)
T PTZ00202 330 VKA-LGVPN-VEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVA-LACDRRLCHVVIEVPLESLTIA 406 (550)
T ss_pred HHH-cCCCC-cccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHH-HHccchhheeeeeehHhhcchh
Confidence 888 55422 222122223333332 2 666666663 22222111222111 1112346677765443332111
Q ss_pred ---cCCCeEEecCCCCHHHHHHHHHHh
Q 042374 206 ---CGVNYVYEVEGLEHNKAFELFYRK 229 (714)
Q Consensus 206 ---~~~~~~~~l~~L~~~~~~~l~~~~ 229 (714)
...-..|.++.++.++|.++....
T Consensus 407 ~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 407 NTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred cccCccceeEecCCCCHHHHHHHHhhc
Confidence 112346889999999999987655
No 81
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.48 E-value=2.7e-06 Score=94.44 Aligned_cols=169 Identities=19% Similarity=0.272 Sum_probs=95.4
Q ss_pred CCCCcccchhhHH---HHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHH
Q 042374 55 DLDGFVGLNSRIE---EVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRD 131 (714)
Q Consensus 55 ~~~~~vGr~~~~~---~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 131 (714)
..++|||.+..+. .+.+++.. .....+.++|++|+||||+|+.+++....+|. .+... ...+.+ .+
T Consensus 26 tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~-----~~~i~d-ir 94 (725)
T PRK13341 26 TLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNAV-----LAGVKD-LR 94 (725)
T ss_pred cHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehhh-----hhhhHH-HH
Confidence 3456899888774 45566543 34556789999999999999999987765542 11100 001111 11
Q ss_pred HHHHHHhCCCCCcccchhhHHHHHHHh--cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEE--cCChh--HHH
Q 042374 132 EVISQVLGDKNLKIGTLVIHQNIRKRL--RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIIT--TRDKQ--VLD 204 (714)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliT--tR~~~--v~~ 204 (714)
+++ +...+.+ .+++.++|+||++.. ..+.+.+...+ ..|+.++++ |.+.. +..
T Consensus 95 ~~i-----------------~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 95 AEV-----------------DRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNK 154 (725)
T ss_pred HHH-----------------HHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhh
Confidence 111 1111111 246779999999754 24556665443 235545553 44331 211
Q ss_pred h-cCCCeEEecCCCCHHHHHHHHHHhhhh------cCCCChhHHHHHHHHHHHhcCCC
Q 042374 205 K-CGVNYVYEVEGLEHNKAFELFYRKAFR------QNNYPPDFLGLSLEVVHYARNNP 255 (714)
Q Consensus 205 ~-~~~~~~~~l~~L~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~i~~~~~g~P 255 (714)
. ......+.+++++.++...++.+.+-. .... .-..+....|++.+.|.-
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v-~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKV-DLEPEAEKHLVDVANGDA 211 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCccc-CCCHHHHHHHHHhCCCCH
Confidence 1 122457999999999999999876531 1110 111234566666666653
No 82
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=4.5e-06 Score=90.32 Aligned_cols=196 Identities=11% Similarity=0.027 Sum_probs=107.7
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
..+.+||.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+...-. .-+.. +..+..-..+...-.
T Consensus 14 tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~-~~~~p----Cg~C~sCr~i~~g~~ 87 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENA-QHGEP----CGVCQSCTQIDAGRY 87 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCC-CCCCC----CcccHHHHHHhccCc
Confidence 34558999999999999886432 2467889999999999999999986532110 00000 000000000000000
Q ss_pred HHHhCCCCCcccchhhHHHHHHH-----hcCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCChh-HHHh-c
Q 042374 135 SQVLGDKNLKIGTLVIHQNIRKR-----LRQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDKQ-VLDK-C 206 (714)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~~-v~~~-~ 206 (714)
..+...+.......+.++.+.+. ..+++-++|+|+++.. ....+.|+..+......+++|++|.+.. +... .
T Consensus 88 ~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIr 167 (709)
T PRK08691 88 VDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVL 167 (709)
T ss_pred cceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHH
Confidence 00000000000111122222221 2356679999999865 2345566666554445566666665442 2211 1
Q ss_pred CCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhh
Q 042374 207 GVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLAL 258 (714)
Q Consensus 207 ~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 258 (714)
+....+.+++++.++..+.+.+.+-.....-. .+....|++.++|.+.-+
T Consensus 168 SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id--~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 168 SRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE--PPALQLLGRAAAGSMRDA 217 (709)
T ss_pred HHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHhCCCHHHH
Confidence 22356888999999999999877644332111 246788899999988544
No 83
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.46 E-value=5.9e-07 Score=91.02 Aligned_cols=152 Identities=22% Similarity=0.325 Sum_probs=73.6
Q ss_pred ccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCC
Q 042374 519 SVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGR 598 (714)
Q Consensus 519 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 598 (714)
+++.|++++|.++.+|. -..+|++|.+++|..+..+|..+ .++|+.|.+.+|.....+|.. |+.|+++.
T Consensus 53 ~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~ 121 (426)
T PRK15386 53 ASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLEIKG 121 (426)
T ss_pred CCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEEeCC
Confidence 34444455455555541 12345666665555555555433 235666666665444444432 34444444
Q ss_pred ccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcC-c--C--CCCCCCCEEECCCCCCcccchhhccCCCCCee
Q 042374 599 TKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYA-L--N--GCLSSLEYLDLSGNDFESLPASIKQLSRLRKL 673 (714)
Q Consensus 599 ~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~--~--~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L 673 (714)
+....++ .+| ++|+.|.+.+++.. . . .-.++|++|++++|....+|..+. .+|+.|
T Consensus 122 n~~~~L~-----------~LP------ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L 182 (426)
T PRK15386 122 SATDSIK-----------NVP------NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSI 182 (426)
T ss_pred CCCcccc-----------cCc------chHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEE
Confidence 3322111 111 12344444322100 0 0 112578888888777665554433 578888
Q ss_pred ccccCccc-cccC--CCcCcccEeecccCcc
Q 042374 674 HLCYCDKL-QSIP--ELPLSLKWLDASNCER 701 (714)
Q Consensus 674 ~l~~~~~~-~~lp--~~~~~L~~L~l~~c~~ 701 (714)
+++.|... -.++ .+|+++ .|++.+|-.
T Consensus 183 ~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lk 212 (426)
T PRK15386 183 TLHIEQKTTWNISFEGFPDGL-DIDLQNSVL 212 (426)
T ss_pred EecccccccccCccccccccc-Eechhhhcc
Confidence 88765321 1122 345667 778877744
No 84
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.46 E-value=4.9e-06 Score=80.43 Aligned_cols=148 Identities=12% Similarity=0.218 Sum_probs=87.1
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHhc
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRLR 159 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 159 (714)
...+.|+|++|+|||+|++.+++....+-..+.|+. ..... ... ..+.+.+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~----~~~~~---~~~---------------------~~~~~~~~ 96 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP----LDKRA---WFV---------------------PEVLEGME 96 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE----HHHHh---hhh---------------------HHHHHHhh
Confidence 357899999999999999999997765544555654 11100 000 11111121
Q ss_pred CCcEEEEEeCCCCC--HHHHHH-HhcCCCC-CCCC-cEEEEEcCChh---------HHHhcCCCeEEecCCCCHHHHHHH
Q 042374 160 QVKMLIVLDAVHDG--FTQLES-LAGELDK-FTTG-SRIIITTRDKQ---------VLDKCGVNYVYEVEGLEHNKAFEL 225 (714)
Q Consensus 160 ~k~~LlVlDdv~~~--~~~~~~-l~~~l~~-~~~g-s~IliTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~l 225 (714)
. .-++++||+... ...|+. +...+.. ...| .++|+||+... +...+....++++++++.++..++
T Consensus 97 ~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~ 175 (235)
T PRK08084 97 Q-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQA 175 (235)
T ss_pred h-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHH
Confidence 1 237899999643 123332 2111111 1233 46889887542 223334457899999999999999
Q ss_pred HHHhhhhcC-CCChhHHHHHHHHHHHhcCCChhhH
Q 042374 226 FYRKAFRQN-NYPPDFLGLSLEVVHYARNNPLALE 259 (714)
Q Consensus 226 ~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Plai~ 259 (714)
+.+++.... ..+ +++...|++.+.|..-.+.
T Consensus 176 l~~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 176 LQLRARLRGFELP---EDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhhcCCHHHHH
Confidence 988664432 122 2567777777777654443
No 85
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=2.4e-05 Score=80.25 Aligned_cols=197 Identities=11% Similarity=0.044 Sum_probs=112.6
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhc--ccceEE-e--eechhcccccChHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRH--FQGKCF-M--ANVREESNKMGAIHV 129 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~--f~~~~~-~--~~~~~~~~~~~~~~~ 129 (714)
....++|.+...+.|.+.+..+. -.+.+.++|+.|+||+|+|..+++.+-.+ ...... . ... ...... ..
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l-~~~~~c---~~ 91 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSL-AIDPDH---PV 91 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccc-cCCCCC---hH
Confidence 44668999999999999885432 24578899999999999999999865321 000000 0 000 000000 01
Q ss_pred HHHHHHHHh------C----CCCC---cccchhhHHHHHHHhc-----CCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCC
Q 042374 130 RDEVISQVL------G----DKNL---KIGTLVIHQNIRKRLR-----QVKMLIVLDAVHDG-FTQLESLAGELDKFTTG 190 (714)
Q Consensus 130 ~~~~~~~~~------~----~~~~---~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~g 190 (714)
.+.+..... . .... ..-.+++++.+.+.+. +.+-++|+|+++.. ....+.|...+.....+
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 111110000 0 0000 0001223334444432 55679999999765 35566676666544456
Q ss_pred cEEEEEcCChh-HHHh-cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHhh
Q 042374 191 SRIIITTRDKQ-VLDK-CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVLG 262 (714)
Q Consensus 191 s~IliTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 262 (714)
+.+|++|.... +... ......+.+.+++.++..+++.+.... ... .....++..++|.|..+..+.
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~~---~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LPD---DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CCH---HHHHHHHHHcCCCHHHHHHHh
Confidence 66666666553 3222 233468999999999999999776311 111 222678899999998665543
No 86
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.45 E-value=1.6e-06 Score=83.75 Aligned_cols=176 Identities=19% Similarity=0.256 Sum_probs=105.4
Q ss_pred CCCCcccchhhHHH---HHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHH
Q 042374 55 DLDGFVGLNSRIEE---VKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRD 131 (714)
Q Consensus 55 ~~~~~vGr~~~~~~---l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 131 (714)
.-..+||.+..+.+ |.+++. .+....+.+||++|+||||||+.++..-+.+ ...||. .+....-..-.+
T Consensus 136 tL~dyvGQ~hlv~q~gllrs~ie--q~~ipSmIlWGppG~GKTtlArlia~tsk~~--Syrfve----lSAt~a~t~dvR 207 (554)
T KOG2028|consen 136 TLDDYVGQSHLVGQDGLLRSLIE--QNRIPSMILWGPPGTGKTTLARLIASTSKKH--SYRFVE----LSATNAKTNDVR 207 (554)
T ss_pred hHHHhcchhhhcCcchHHHHHHH--cCCCCceEEecCCCCchHHHHHHHHhhcCCC--ceEEEE----EeccccchHHHH
Confidence 34556666654432 333332 3456778899999999999999999865554 245555 333333334445
Q ss_pred HHHHHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEE--EcCChhH---HHh
Q 042374 132 EVISQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIII--TTRDKQV---LDK 205 (714)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~Ili--TtR~~~v---~~~ 205 (714)
.++++ .+-...+..+|.++++|+|..- ..+.+.++ |...+|.-++| ||.++.. +..
T Consensus 208 ~ife~---------------aq~~~~l~krkTilFiDEiHRFNksQQD~fL---P~VE~G~I~lIGATTENPSFqln~aL 269 (554)
T KOG2028|consen 208 DIFEQ---------------AQNEKSLTKRKTILFIDEIHRFNKSQQDTFL---PHVENGDITLIGATTENPSFQLNAAL 269 (554)
T ss_pred HHHHH---------------HHHHHhhhcceeEEEeHHhhhhhhhhhhccc---ceeccCceEEEecccCCCccchhHHH
Confidence 55544 2222345678999999999543 23444443 44566765554 6776643 122
Q ss_pred cCCCeEEecCCCCHHHHHHHHHHhhh--hc-C---C--CCh---hHHHHHHHHHHHhcCCCh
Q 042374 206 CGVNYVYEVEGLEHNKAFELFYRKAF--RQ-N---N--YPP---DFLGLSLEVVHYARNNPL 256 (714)
Q Consensus 206 ~~~~~~~~l~~L~~~~~~~l~~~~~~--~~-~---~--~~~---~~~~~~~~i~~~~~g~Pl 256 (714)
.....++.|++|..++...++.+... ++ . . +.+ -...+..-++..|+|-.-
T Consensus 270 lSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 270 LSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 34456899999999999999877432 11 1 1 111 122356667777777653
No 87
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.45 E-value=7e-06 Score=76.72 Aligned_cols=90 Identities=12% Similarity=0.134 Sum_probs=62.2
Q ss_pred CCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCCh-hHHHhc-CCCeEEecCCCCHHHHHHHHHHhhhhcCCC
Q 042374 160 QVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDK-QVLDKC-GVNYVYEVEGLEHNKAFELFYRKAFRQNNY 236 (714)
Q Consensus 160 ~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~ 236 (714)
+.+-++|+||++.. ....+.+...+....+.+.+|++|++. .+.... .....+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---C
Confidence 45668999999765 345677777766555566677766644 222221 23468999999999999988776 2 1
Q ss_pred ChhHHHHHHHHHHHhcCCChh
Q 042374 237 PPDFLGLSLEVVHYARNNPLA 257 (714)
Q Consensus 237 ~~~~~~~~~~i~~~~~g~Pla 257 (714)
. .+.+..+++.++|.|..
T Consensus 170 ~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred C---HHHHHHHHHHcCCCccc
Confidence 1 25688999999998853
No 88
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.45 E-value=4.6e-06 Score=90.12 Aligned_cols=240 Identities=14% Similarity=0.150 Sum_probs=142.3
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
.+...|-|..-.+.|.+. .+.+.+.|..++|.|||||+-..+. ....-..+.|+..-. .+.+.......++
T Consensus 17 ~~~~~v~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde---~dndp~rF~~yLi 87 (894)
T COG2909 17 RPDNYVVRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDE---SDNDPARFLSYLI 87 (894)
T ss_pred CcccccccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCC---ccCCHHHHHHHHH
Confidence 455667777666665542 4688999999999999999999987 334457799997432 2344455555555
Q ss_pred HHHhCCCCCccc------------chhhH-HHHHHHhc--CCcEEEEEeCCCCC-----HHHHHHHhcCCCCCCCCcEEE
Q 042374 135 SQVLGDKNLKIG------------TLVIH-QNIRKRLR--QVKMLIVLDAVHDG-----FTQLESLAGELDKFTTGSRII 194 (714)
Q Consensus 135 ~~~~~~~~~~~~------------~~~~~-~~l~~~l~--~k~~LlVlDdv~~~-----~~~~~~l~~~l~~~~~gs~Il 194 (714)
..+....+...+ ....+ ..+...+. .++..+||||..-. ...++.+.... .++-..+
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~l~lv 164 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PENLTLV 164 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CCCeEEE
Confidence 553321111111 11112 44444443 56899999997432 23345555443 3577899
Q ss_pred EEcCChhHH---HhcCCCeEEecC----CCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHhhhhhcc
Q 042374 195 ITTRDKQVL---DKCGVNYVYEVE----GLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVLGSSLYQ 267 (714)
Q Consensus 195 iTtR~~~v~---~~~~~~~~~~l~----~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~ 267 (714)
+|||+..-. ...-....+++. .|+.+|+.++|....... -+ ..-++.+.+..+|-+-|+..++-.+++
T Consensus 165 v~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~--Ld---~~~~~~L~~~teGW~~al~L~aLa~~~ 239 (894)
T COG2909 165 VTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP--LD---AADLKALYDRTEGWAAALQLIALALRN 239 (894)
T ss_pred EEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC--CC---hHHHHHHHhhcccHHHHHHHHHHHccC
Confidence 999987422 211112233333 689999999997764111 11 145788999999999999888877763
Q ss_pred C-CHHHHHHHHHHHhcCCCchHHH-HHHHhhhcCchhhHhhhhhcccccc
Q 042374 268 K-SKQQWEDRLHNLRLISEPNIYK-VLKISYDELNSKEKEMFLDIACFFK 315 (714)
Q Consensus 268 ~-~~~~w~~~l~~l~~~~~~~~~~-~l~ls~~~L~~~~k~~~~~~~~fp~ 315 (714)
. +...--..+.... .-+.. ...--++.||++++..+.-+|+++.
T Consensus 240 ~~~~~q~~~~LsG~~----~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~ 285 (894)
T COG2909 240 NTSAEQSLRGLSGAA----SHLSDYLVEEVLDRLPPELRDFLLQTSVLSR 285 (894)
T ss_pred CCcHHHHhhhccchH----HHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH
Confidence 3 3322222221110 00100 1112356788888888888888753
No 89
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.44 E-value=1.1e-06 Score=91.43 Aligned_cols=174 Identities=18% Similarity=0.240 Sum_probs=100.4
Q ss_pred CCCcccchhhHHHHHhhhccc-----------CCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhccccc
Q 042374 56 LDGFVGLNSRIEEVKSLLCLE-----------SRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKM 124 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~~-----------~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 124 (714)
...+.|++++++++.+.+... -...+.+.++|++|+|||++|+.++++....|-.+.
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~------------ 188 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV------------ 188 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc------------
Confidence 345899999999998876421 123556899999999999999999997765432110
Q ss_pred ChHHHHHHHHHHHhCCCCCcccchhhHHHHHHH-hcCCcEEEEEeCCCCC------------H---HHHHHHhcCCCCC-
Q 042374 125 GAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKR-LRQVKMLIVLDAVHDG------------F---TQLESLAGELDKF- 187 (714)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~------------~---~~~~~l~~~l~~~- 187 (714)
...+ .....+. .......+.+. -...+.+|++|+++.. . ..+..+...+...
T Consensus 189 -~~~l----~~~~~g~------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 189 -GSEL----VRKYIGE------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred -hHHH----HHHhhhH------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 0111 1111111 00111222222 2346789999998642 0 1122333222211
Q ss_pred -CCCcEEEEEcCChhH-----HHhcCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCC
Q 042374 188 -TTGSRIIITTRDKQV-----LDKCGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNP 255 (714)
Q Consensus 188 -~~gs~IliTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 255 (714)
..+..||.||..... .+.......+.++..+.++..++|..++........ .....+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 235678888875432 211233567899999999999999888754332211 12356677777764
No 90
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.44 E-value=6.5e-07 Score=90.72 Aligned_cols=136 Identities=17% Similarity=0.235 Sum_probs=97.4
Q ss_pred cCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCc-cccccCccccCCCCCc
Q 042374 537 VGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRT-KIRELPSTFEKGEGTE 615 (714)
Q Consensus 537 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~ 615 (714)
+..+.++..|++++|. +..+|. -..+|++|.+.+|.....+|..+. ++|++|++++| .+..+|.
T Consensus 48 ~~~~~~l~~L~Is~c~-L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~--------- 112 (426)
T PRK15386 48 IEEARASGRLYIKDCD-IESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE--------- 112 (426)
T ss_pred HHHhcCCCEEEeCCCC-CcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc---------
Confidence 3456889999999994 566662 234799999999988887887553 58999999987 6654443
Q ss_pred ccCCCccCCCCCCCceeccCCCcCcCCCC-CCCCEEECCCCCC---cccchhhccCCCCCeeccccCccccccCCCcCcc
Q 042374 616 SQLPSSVADTNDLEGLSLYLRNYALNGCL-SSLEYLDLSGNDF---ESLPASIKQLSRLRKLHLCYCDKLQSIPELPLSL 691 (714)
Q Consensus 616 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~l-~~L~~L~L~~n~l---~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~~~~L 691 (714)
+|+.|++..+....++.+ ++|+.|.+.+++. ..+|..+ .++|++|++++|......+.+|.+|
T Consensus 113 -----------sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~LP~~LP~SL 179 (426)
T PRK15386 113 -----------SVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNIILPEKLPESL 179 (426)
T ss_pred -----------ccceEEeCCCCCcccccCcchHhheecccccccccccccccc--CCcccEEEecCCCcccCcccccccC
Confidence 467777877766666665 4899999865431 1223211 2689999999999664333478899
Q ss_pred cEeecccCc
Q 042374 692 KWLDASNCE 700 (714)
Q Consensus 692 ~~L~l~~c~ 700 (714)
+.|+++.+.
T Consensus 180 k~L~ls~n~ 188 (426)
T PRK15386 180 QSITLHIEQ 188 (426)
T ss_pred cEEEecccc
Confidence 999998863
No 91
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=7.9e-06 Score=86.11 Aligned_cols=190 Identities=14% Similarity=0.106 Sum_probs=108.0
Q ss_pred CCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHH
Q 042374 56 LDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVIS 135 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (714)
.+++||.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+.-..... ....+.-..-..+..
T Consensus 12 f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~---------~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPT---------SDPCGTCHNCISIKN 81 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCC---------CCCccccHHHHHHhc
Confidence 4568999999999888875432 245788999999999999999997542111000 000000000000000
Q ss_pred HHhCC-----CCCcccchhhHHHHHHH-----hcCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcC-ChhHH
Q 042374 136 QVLGD-----KNLKIGTLVIHQNIRKR-----LRQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTR-DKQVL 203 (714)
Q Consensus 136 ~~~~~-----~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR-~~~v~ 203 (714)
. ... +..+....+..+.+.+. ..+++-++|+|+++.. ....+.|...+....+.+.+|++|. ...+.
T Consensus 82 ~-~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~ 160 (491)
T PRK14964 82 S-NHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIP 160 (491)
T ss_pred c-CCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHH
Confidence 0 000 00000111112222221 1355668999999765 3456777777665556666665554 34443
Q ss_pred Hh-cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhh
Q 042374 204 DK-CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLAL 258 (714)
Q Consensus 204 ~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 258 (714)
.. ......+++.+++.++..+.+.+.+......-+ .+.+..|++.++|.+-.+
T Consensus 161 ~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~--~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 161 VTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD--EESLKLIAENSSGSMRNA 214 (491)
T ss_pred HHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 32 233467999999999999999887654332111 145678888888877533
No 92
>PRK09087 hypothetical protein; Validated
Probab=98.43 E-value=2.3e-06 Score=81.74 Aligned_cols=138 Identities=14% Similarity=0.152 Sum_probs=84.3
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHhc
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRLR 159 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 159 (714)
.+.+.|+|++|+|||+|++.++.... ..|+.. .....+++. .+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~----------~~~~~~~~~---------------------~~~ 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP----------NEIGSDAAN---------------------AAA 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH----------HHcchHHHH---------------------hhh
Confidence 45689999999999999998886532 224430 011111111 111
Q ss_pred CCcEEEEEeCCCCC---HHHHHHHhcCCCCCCCCcEEEEEcCCh---------hHHHhcCCCeEEecCCCCHHHHHHHHH
Q 042374 160 QVKMLIVLDAVHDG---FTQLESLAGELDKFTTGSRIIITTRDK---------QVLDKCGVNYVYEVEGLEHNKAFELFY 227 (714)
Q Consensus 160 ~k~~LlVlDdv~~~---~~~~~~l~~~l~~~~~gs~IliTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~l~~ 227 (714)
+ -++++||++.. ...+-.+...+. ..|..||+|++.. ++...+....++++++++.++..+++.
T Consensus 88 ~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 88 E--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred c--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 1 27888999643 123333333222 3467799988732 233334455789999999999999999
Q ss_pred HhhhhcCC-CChhHHHHHHHHHHHhcCCChhhHH
Q 042374 228 RKAFRQNN-YPPDFLGLSLEVVHYARNNPLALEV 260 (714)
Q Consensus 228 ~~~~~~~~-~~~~~~~~~~~i~~~~~g~Plai~~ 260 (714)
+.+....- .+ +++...|++.+.|..-++..
T Consensus 164 ~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 164 KLFADRQLYVD---PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHH
Confidence 88744321 22 25677778877777665543
No 93
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=6.5e-06 Score=83.86 Aligned_cols=196 Identities=11% Similarity=0.054 Sum_probs=114.1
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhc----ccceEEeeechhcccccChHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRH----FQGKCFMANVREESNKMGAIHVR 130 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~~~~ 130 (714)
....++|-+...+.+...+..+. -.+.+.|+|+.|+||||+|+.+++.+-.+ +....... ........
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~-------~~~~c~~c 92 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD-------PDPASPVW 92 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC-------CCCCCHHH
Confidence 55678999999999999885432 34578899999999999999999876431 11110000 00001112
Q ss_pred HHHHHHH------hCCC-CC------cccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCc
Q 042374 131 DEVISQV------LGDK-NL------KIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGS 191 (714)
Q Consensus 131 ~~~~~~~------~~~~-~~------~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs 191 (714)
+.+.... +... +. ..-.++.++.+.+.+ .+++-++|+|+++.. ....+.++..+......+
T Consensus 93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 2221110 0000 00 001123334444444 245679999999865 344566666555434445
Q ss_pred EE-EEEcCChhHHHhc-CCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHhh
Q 042374 192 RI-IITTRDKQVLDKC-GVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVLG 262 (714)
Q Consensus 192 ~I-liTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 262 (714)
.+ ++|++...+.... .....+++.+++.++..+++.+...... .. .+.+..+++.++|.|..+..+.
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-~~---~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-SD---GEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-CC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 44 4554444333222 2336899999999999999987432211 11 2456788999999998665443
No 94
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=1.3e-05 Score=87.03 Aligned_cols=193 Identities=12% Similarity=0.060 Sum_probs=109.1
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhc--c--cceEEeeechhcccccChHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRH--F--QGKCFMANVREESNKMGAIHVR 130 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~--f--~~~~~~~~~~~~~~~~~~~~~~ 130 (714)
..+++||-+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+.-. . .....-. +..+ ..-
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p----Cg~C----~~C 84 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP----CGVC----QAC 84 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC----CCcc----HHH
Confidence 34568999998999999886432 24677899999999999999998865310 0 0000000 0000 011
Q ss_pred HHHHHH----HhCCCCCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEc-CC
Q 042374 131 DEVISQ----VLGDKNLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITT-RD 199 (714)
Q Consensus 131 ~~~~~~----~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTt-R~ 199 (714)
+.+... +...+.......+..+.+.+.. .++.-++|+|+++.. ...++.++..+......+.+|++| ..
T Consensus 85 ~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~ 164 (618)
T PRK14951 85 RDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDP 164 (618)
T ss_pred HHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCc
Confidence 111000 0000000011122222222222 244568999999876 356777777766544555665554 43
Q ss_pred hhHHH-hcCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhh
Q 042374 200 KQVLD-KCGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLAL 258 (714)
Q Consensus 200 ~~v~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 258 (714)
..+.. .......+++++++.++..+.+.+.+......-+ .+....|++.++|.+--+
T Consensus 165 ~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie--~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 165 QKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE--PQALRLLARAARGSMRDA 222 (618)
T ss_pred hhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 33332 2233478999999999999999877643322111 145678888888877544
No 95
>PLN03150 hypothetical protein; Provisional
Probab=98.41 E-value=4.7e-07 Score=100.52 Aligned_cols=80 Identities=23% Similarity=0.203 Sum_probs=34.4
Q ss_pred ceEecccccce-EeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCc
Q 042374 521 TKLILWETAIK-EVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRT 599 (714)
Q Consensus 521 ~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 599 (714)
+.|+|.++.+. .+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|++++|.+.+.+|..++++++|++|++++|
T Consensus 421 ~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 421 DGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500 (623)
T ss_pred EEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence 33444444443 23333444444444444444444444444444444444444444444444444444444444444444
Q ss_pred c
Q 042374 600 K 600 (714)
Q Consensus 600 ~ 600 (714)
.
T Consensus 501 ~ 501 (623)
T PLN03150 501 S 501 (623)
T ss_pred c
Confidence 3
No 96
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.41 E-value=5.6e-06 Score=80.05 Aligned_cols=168 Identities=15% Similarity=0.190 Sum_probs=92.5
Q ss_pred cchhhH-HHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhC
Q 042374 61 GLNSRI-EEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLG 139 (714)
Q Consensus 61 Gr~~~~-~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (714)
|...+. ..+.++.. .......+.|+|.+|+|||+||+.+++.....-....++... . .... .
T Consensus 23 ~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~----~------~~~~-~----- 85 (227)
T PRK08903 23 GENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA----S------PLLA-F----- 85 (227)
T ss_pred CCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH----H------hHHH-H-----
Confidence 544433 33444433 222345788999999999999999999764433344444411 0 0000 0
Q ss_pred CCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCC-HHHHHHHhcCCCCC-CCCc-EEEEEcCChhHHH--------hcCC
Q 042374 140 DKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG-FTQLESLAGELDKF-TTGS-RIIITTRDKQVLD--------KCGV 208 (714)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~-~~gs-~IliTtR~~~v~~--------~~~~ 208 (714)
... ...-++|+||++.. ......+...+... ..+. .|++|++...... .+..
T Consensus 86 ----------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~ 148 (227)
T PRK08903 86 ----------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGW 148 (227)
T ss_pred ----------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhc
Confidence 001 12337889999643 12222333322211 2333 3666666432111 2222
Q ss_pred CeEEecCCCCHHHHHHHHHHhhhhcC-CCChhHHHHHHHHHHHhcCCChhhHHhhhhh
Q 042374 209 NYVYEVEGLEHNKAFELFYRKAFRQN-NYPPDFLGLSLEVVHYARNNPLALEVLGSSL 265 (714)
Q Consensus 209 ~~~~~l~~L~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 265 (714)
...+++++++.++...++.+.+.... ..++ +....+++...|++..+..+...+
T Consensus 149 ~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~---~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 149 GLVYELKPLSDADKIAALKAAAAERGLQLAD---EVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CeEEEecCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhccCCHHHHHHHHHHH
Confidence 46889999999987777766543222 1222 567777888888888776655544
No 97
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=8.5e-06 Score=87.37 Aligned_cols=190 Identities=11% Similarity=0.036 Sum_probs=107.2
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhc--ccceEEeeechhcccccChHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRH--FQGKCFMANVREESNKMGAIHVRDE 132 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~ 132 (714)
..+++||-+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+... .... . +..+. ..+.
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~---p----Cg~C~----~C~~ 81 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSAN---P----CNDCE----NCRE 81 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcc---c----CCCCH----HHHH
Confidence 34568999999999999985432 24567899999999999999999865321 1000 0 00000 0000
Q ss_pred HHHH----HhCCCCCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCCh-h
Q 042374 133 VISQ----VLGDKNLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDK-Q 201 (714)
Q Consensus 133 ~~~~----~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~-~ 201 (714)
+... +..-+.......+..+.+.+.+ .++.-++|+|+++.. ....+.+...+......+++|++|.+. .
T Consensus 82 i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~k 161 (509)
T PRK14958 82 IDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHK 161 (509)
T ss_pred HhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHh
Confidence 0000 0000000011111222222221 355668999999875 345677776665545566666655443 3
Q ss_pred HHHh-cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhh
Q 042374 202 VLDK-CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLAL 258 (714)
Q Consensus 202 v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 258 (714)
+... ......+++++++.++....+.+.+-.....-. .+....|++.++|.+.-+
T Consensus 162 l~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~--~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 162 LPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE--NAALDLLARAANGSVRDA 217 (509)
T ss_pred chHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHH
Confidence 3221 223357889999999988877666543322111 145677888888887544
No 98
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.37 E-value=8.6e-06 Score=86.21 Aligned_cols=165 Identities=12% Similarity=0.153 Sum_probs=97.2
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcc--cceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHF--QGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKR 157 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (714)
...+.|+|..|+|||+|++.+++.+.... ..++++. ..+....+...+.... +..+.+++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~~~~l~~~~-------~~~~~~~~~ 203 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKAVDILQKTH-------KEIEQFKNE 203 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHHhh-------hHHHHHHHH
Confidence 34688999999999999999999765432 2334443 1234444443321100 111334444
Q ss_pred hcCCcEEEEEeCCCCC--HH-HHHHHhcCCCC-CCCCcEEEEEcCCh-h--------HHHhcCCCeEEecCCCCHHHHHH
Q 042374 158 LRQVKMLIVLDAVHDG--FT-QLESLAGELDK-FTTGSRIIITTRDK-Q--------VLDKCGVNYVYEVEGLEHNKAFE 224 (714)
Q Consensus 158 l~~k~~LlVlDdv~~~--~~-~~~~l~~~l~~-~~~gs~IliTtR~~-~--------v~~~~~~~~~~~l~~L~~~~~~~ 224 (714)
++. .-+||+||+... .. ..+.+...+.. ...|..||+|+... . +...+...-++.+++++.++..+
T Consensus 204 ~~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~ 282 (450)
T PRK14087 204 ICQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATA 282 (450)
T ss_pred hcc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHH
Confidence 443 447889999643 11 22333222221 13455688886533 1 22223344578899999999999
Q ss_pred HHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHhh
Q 042374 225 LFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVLG 262 (714)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 262 (714)
++.+++........-..++...|++.+.|.|-.+..+.
T Consensus 283 iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 283 IIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 99988753221011223678899999999997765444
No 99
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=1.1e-05 Score=87.08 Aligned_cols=193 Identities=10% Similarity=0.046 Sum_probs=105.3
Q ss_pred CCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHH
Q 042374 56 LDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVIS 135 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (714)
..++||-+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+...... ..-. +..+..-..+...-..
T Consensus 15 f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~-~~~p----cg~C~~C~~i~~~~~~ 88 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGV-TATP----CGVCSACLEIDSGRFV 88 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCC-CCCC----CCCCHHHHHHhcCCCC
Confidence 3558999999999998885432 24567899999999999999999865321100 0000 0000000000000000
Q ss_pred HHhCCCCCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCCh-hHHHh-cC
Q 042374 136 QVLGDKNLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDK-QVLDK-CG 207 (714)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~-~v~~~-~~ 207 (714)
.+...+.......+..+.+.+.. .+++-++|+|+++.. ....+.+...+......+.+|++|.+. .+... ..
T Consensus 89 d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~S 168 (527)
T PRK14969 89 DLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLS 168 (527)
T ss_pred ceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHH
Confidence 00000000001112222222222 356679999999866 345666776665544555566555433 32211 12
Q ss_pred CCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCCh
Q 042374 208 VNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPL 256 (714)
Q Consensus 208 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 256 (714)
....+++++++.++..+.+.+.+....... ....+..|++.++|.+-
T Consensus 169 Rc~~~~f~~l~~~~i~~~L~~il~~egi~~--~~~al~~la~~s~Gslr 215 (527)
T PRK14969 169 RCLQFNLKQMPPPLIVSHLQHILEQENIPF--DATALQLLARAAAGSMR 215 (527)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 235789999999999988877654322111 11456788888999775
No 100
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.33 E-value=1.1e-07 Score=100.92 Aligned_cols=233 Identities=22% Similarity=0.171 Sum_probs=137.9
Q ss_pred cccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEeC
Q 042374 426 LLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINCG 505 (714)
Q Consensus 426 ~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 505 (714)
+..++.+.+..|.+......+..+.+|+.|++.+|.+ ..+...+..+.+|++|++++|.+ +.+...-.+
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i-~~i~~~l~~~~~L~~L~ls~N~I-~~i~~l~~l--------- 139 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKI-EKIENLLSSLVNLQVLDLSFNKI-TKLEGLSTL--------- 139 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccch-hhcccchhhhhcchheecccccc-ccccchhhc---------
Confidence 4555555566666555444566677777777777643 33332366677777777777533 221111111
Q ss_pred CCcCCCcccccccccceEecccccceEeccccCCCCCCcEEecCCCCCCcccc-ccccCCCCCCEEEecCCCCCCCCchh
Q 042374 506 GCVNLTEFPQISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRIS-TSILKLKSLQNLYLIQCFDLENFPEI 584 (714)
Q Consensus 506 ~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~ 584 (714)
..|+.|++.+|.|..++. +..+.+|+.+++++|.+...-+ . ...+.+|+.+.+.+|.+.. ...
T Consensus 140 ------------~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~ 203 (414)
T KOG0531|consen 140 ------------TLLKELNLSGNLISDISG-LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEG 203 (414)
T ss_pred ------------cchhhheeccCcchhccC-CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccc
Confidence 125566666677776633 5558889999999987644333 2 5778888888888887643 234
Q ss_pred hhccccccccccCCccccccCccccCCCCCcccCCCccCCCC--CCCceeccCCCcCc----CCCCCCCCEEECCCCCCc
Q 042374 585 LEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTN--DLEGLSLYLRNYAL----NGCLSSLEYLDLSGNDFE 658 (714)
Q Consensus 585 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~--~L~~L~l~~~~~~~----~~~l~~L~~L~L~~n~l~ 658 (714)
+..+..+..+++..|.+..+.. +..+. +|+.+++.+|.+.. +..+..+..|++..|++.
T Consensus 204 ~~~~~~l~~~~l~~n~i~~~~~---------------l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 204 LDLLKKLVLLSLLDNKISKLEG---------------LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred hHHHHHHHHhhcccccceeccC---------------cccchhHHHHHHhcccCccccccccccccccccccchhhcccc
Confidence 4455556666777777765432 22222 37888888888765 456778888888888777
Q ss_pred ccchhhccCCCCCeeccccCccccccC-------CCcCcccEeecccCcc
Q 042374 659 SLPASIKQLSRLRKLHLCYCDKLQSIP-------ELPLSLKWLDASNCER 701 (714)
Q Consensus 659 ~lp~~l~~l~~L~~L~l~~~~~~~~lp-------~~~~~L~~L~l~~c~~ 701 (714)
.+.. +...+.+..+....+++..... ...+++....+..++.
T Consensus 269 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 269 NLEG-LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred cccc-ccccchHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence 5542 3444555555555555431111 1124555566655543
No 101
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.1e-05 Score=84.53 Aligned_cols=196 Identities=9% Similarity=0.056 Sum_probs=109.7
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhc--ccceEEeeec-hhcccccChHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRH--FQGKCFMANV-REESNKMGAIHVRD 131 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~-~~~~~~~~~~~~~~ 131 (714)
..++++|.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+... .....|.... ..+..+ ..-+
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c----~~c~ 88 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGEC----ESCR 88 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCC----HHHH
Confidence 44668999999999988885432 24568899999999999999999876421 1111111000 000000 0011
Q ss_pred HHHHHH-hC---CCCCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEc-CCh
Q 042374 132 EVISQV-LG---DKNLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITT-RDK 200 (714)
Q Consensus 132 ~~~~~~-~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTt-R~~ 200 (714)
++.... .. -+.......+.++.+.+.+ .+++-++|+|+++.. ...++.+...+....+.+.+|++| +..
T Consensus 89 ~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 89 DFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred HHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 111000 00 0000011122222333333 345568899999765 245677777766555566665554 444
Q ss_pred hHHHhc-CCCeEEecCCCCHHHHHHHHHHhhhhcC-CCChhHHHHHHHHHHHhcCCChhh
Q 042374 201 QVLDKC-GVNYVYEVEGLEHNKAFELFYRKAFRQN-NYPPDFLGLSLEVVHYARNNPLAL 258 (714)
Q Consensus 201 ~v~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Plai 258 (714)
.+.... .....+++.+++.++..+.+...+-... ... .+.+..+++.++|.+--+
T Consensus 169 kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~---~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 169 KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD---ADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 443221 2235788999999999988877653222 122 256788899999987543
No 102
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=2.1e-05 Score=85.64 Aligned_cols=193 Identities=12% Similarity=0.079 Sum_probs=111.0
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhccc----ceEEeeechhcccccChHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQ----GKCFMANVREESNKMGAIHVR 130 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~----~~~~~~~~~~~~~~~~~~~~~ 130 (714)
....+||.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+..... ...+-. +..+ ...
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~----cg~c----~~C 92 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL----CGVG----EHC 92 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc----Cccc----HHH
Confidence 34568999999999999886432 2457889999999999999999987532211 000000 0000 011
Q ss_pred HHHHHHH----hCCCCCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEc-CC
Q 042374 131 DEVISQV----LGDKNLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITT-RD 199 (714)
Q Consensus 131 ~~~~~~~----~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTt-R~ 199 (714)
+.+.... ...+.......+.++.+.+.+ .+++-++|+|+++.. ....+.|...+......+.+|++| ..
T Consensus 93 ~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~ 172 (598)
T PRK09111 93 QAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEI 172 (598)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCCh
Confidence 1111100 000000111122222232222 245568999999765 345677777666555566665544 44
Q ss_pred hhHHHhc-CCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhh
Q 042374 200 KQVLDKC-GVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLAL 258 (714)
Q Consensus 200 ~~v~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 258 (714)
..+.... .....+++..++.++....+.+.+-.....-. .+.+..|++.++|.+.-+
T Consensus 173 ~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~--~eAl~lIa~~a~Gdlr~a 230 (598)
T PRK09111 173 RKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE--DEALALIARAAEGSVRDG 230 (598)
T ss_pred hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 4333222 23467999999999999999887643322111 156778888899888644
No 103
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=5.8e-05 Score=81.80 Aligned_cols=190 Identities=16% Similarity=0.064 Sum_probs=108.4
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
..+++||.+..++.|..++..+ .-.+.+.++|+.|+||||+|+.+++.+...... .+-. +..+. ..+.+.
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~-~~~p----Cg~C~----~C~~i~ 80 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGP-TATP----CGVCE----SCVALA 80 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCC-CCCc----ccccH----HHHHhh
Confidence 3456899999999999998643 234567899999999999999999865421000 0000 00000 001110
Q ss_pred HHHhC------CCCCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEE-EcCChh
Q 042374 135 SQVLG------DKNLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIII-TTRDKQ 201 (714)
Q Consensus 135 ~~~~~------~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~Ili-TtR~~~ 201 (714)
..-.+ -+.......+..+.+.+.+ .+++-++|+|+++.. ....+.|+..+......+.+|+ ||....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 00000 0000111122222232222 345668999999765 3566777776665455555554 544444
Q ss_pred HHHh-cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCCh
Q 042374 202 VLDK-CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPL 256 (714)
Q Consensus 202 v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 256 (714)
+... ......+++..++.++..+.+.+.+......-. .+.+..|++.++|.+-
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~--~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD--DAVYPLVIRAGGGSPR 214 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 4332 233578999999999999888776643322111 1456777888888764
No 104
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1e-05 Score=89.07 Aligned_cols=193 Identities=12% Similarity=0.075 Sum_probs=109.7
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
..+++||.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+.......-+-. + +.....+.+.
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~----c----~~c~~c~~i~ 84 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRP----C----GTCEMCRAIA 84 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC----C----ccCHHHHHHh
Confidence 34568999999999988885432 3456789999999999999999987632110000000 0 0011111111
Q ss_pred HHHhCCC-----CCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCC-hhH
Q 042374 135 SQVLGDK-----NLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRD-KQV 202 (714)
Q Consensus 135 ~~~~~~~-----~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~-~~v 202 (714)
.. ...+ .......+..+.+.+.+ .+++-++|+|+++.. ....+.|...+......+.+|+++.+ ..+
T Consensus 85 ~~-~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 85 EG-SAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163 (585)
T ss_pred cC-CCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhh
Confidence 11 0000 00011122222233222 245668999999755 24566676666544456666655543 333
Q ss_pred HHh-cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhH
Q 042374 203 LDK-CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALE 259 (714)
Q Consensus 203 ~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 259 (714)
... ......+++..++.++....+.+.+......-. .+.+..+++.++|.+..+.
T Consensus 164 l~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~--~eal~~La~~s~Gdlr~al 219 (585)
T PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE--PGALEAIARAATGSMRDAE 219 (585)
T ss_pred hHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHH
Confidence 322 223457889999999999888877643321111 1567788889999886543
No 105
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.30 E-value=6.8e-07 Score=88.85 Aligned_cols=232 Identities=22% Similarity=0.241 Sum_probs=149.9
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRL 158 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 158 (714)
..+-+.++|.|||||||++-.+.. ++..|....|+.....+.+.. ..-.++...++....+. ......+...+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~----~v~~~~ag~~gl~~~~g--~~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPA----LVFPTLAGALGLHVQPG--DSAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchh----HhHHHHHhhcccccccc--hHHHHHHHHHH
Confidence 467889999999999999999999 888888777776544433322 22222222233222110 11124566777
Q ss_pred cCCcEEEEEeCCCCCHHHHHHHhcCCCCCCCCcEEEEEcCChhHHHhcCCCeEEecCCCCHH-HHHHHHHHhhhhcCC--
Q 042374 159 RQVKMLIVLDAVHDGFTQLESLAGELDKFTTGSRIIITTRDKQVLDKCGVNYVYEVEGLEHN-KAFELFYRKAFRQNN-- 235 (714)
Q Consensus 159 ~~k~~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~l~~~~~~~~~~-- 235 (714)
.+++.++|+||-....+.-..+...+....+.-.|+.|+|..-. +.....+.++.|+.. ++.++|...+.-...
T Consensus 86 ~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 86 GDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 89999999999865433333333344333444568888887633 223456778888776 688888776632211
Q ss_pred -CChhHHHHHHHHHHHhcCCChhhHHhhhhhccCCHHHHHHHHHH----HhcCC------CchHHHHHHHhhhcCchhhH
Q 042374 236 -YPPDFLGLSLEVVHYARNNPLALEVLGSSLYQKSKQQWEDRLHN----LRLIS------EPNIYKVLKISYDELNSKEK 304 (714)
Q Consensus 236 -~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~l~~----l~~~~------~~~~~~~l~ls~~~L~~~~k 304 (714)
...........|.++.+|.|++|...++..+.....+-...++. ++.-. .......+.+||.-|..-.+
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~ 242 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWER 242 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHH
Confidence 11223357789999999999999999999887765444333332 22211 13356788999999988888
Q ss_pred hhhhhccccccCcccc
Q 042374 305 EMFLDIACFFKGEDLD 320 (714)
Q Consensus 305 ~~~~~~~~fp~~~~~~ 320 (714)
.-|.-++.|...+..+
T Consensus 243 ~~~~rLa~~~g~f~~~ 258 (414)
T COG3903 243 ALFGRLAVFVGGFDLG 258 (414)
T ss_pred HHhcchhhhhhhhccc
Confidence 8888888887666554
No 106
>PLN03150 hypothetical protein; Provisional
Probab=98.28 E-value=9.7e-07 Score=98.04 Aligned_cols=102 Identities=22% Similarity=0.182 Sum_probs=69.8
Q ss_pred CCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCc
Q 042374 542 NLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSS 621 (714)
Q Consensus 542 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~ 621 (714)
.++.|+|++|.+.+.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.. .+|..
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg-------------~iP~~ 485 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG-------------SIPES 485 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC-------------CCchH
Confidence 35677777777777777777777777777777777777777777777777777777777642 23333
Q ss_pred cCCCCCCCceeccCCCcCc-----CCC-CCCCCEEECCCCC
Q 042374 622 VADTNDLEGLSLYLRNYAL-----NGC-LSSLEYLDLSGND 656 (714)
Q Consensus 622 ~~~~~~L~~L~l~~~~~~~-----~~~-l~~L~~L~L~~n~ 656 (714)
++.+++|+.|+|++|.+.. ++. +.++..+++.+|.
T Consensus 486 l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 486 LGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred HhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 6777777777777777654 121 2355667777664
No 107
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.28 E-value=9.8e-06 Score=84.52 Aligned_cols=174 Identities=21% Similarity=0.268 Sum_probs=97.7
Q ss_pred CCCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhccccc
Q 042374 56 LDGFVGLNSRIEEVKSLLCL-----------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKM 124 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 124 (714)
.+.+.|++++++++.+.+.. +-...+.|.++|++|+|||++|+.++++....|- .+.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i---~v~--------- 197 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI---RVV--------- 197 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEE---Eee---------
Confidence 34578999999999887632 1133567899999999999999999987654321 111
Q ss_pred ChHHHHHHHHHHHhCCCCCcccchhhHHHHHHH-hcCCcEEEEEeCCCCC------------HHH---HHHHhcCCCCC-
Q 042374 125 GAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKR-LRQVKMLIVLDAVHDG------------FTQ---LESLAGELDKF- 187 (714)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~------------~~~---~~~l~~~l~~~- 187 (714)
... +.....|.. ......+.+. -...+.+|++|+++.. ... +..+...+...
T Consensus 198 -~~~----l~~~~~g~~------~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 198 -GSE----LVQKFIGEG------ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred -hHH----HhHhhccch------HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 011 111111110 1111222222 2346789999999642 011 22232222211
Q ss_pred -CCCcEEEEEcCChhHHH-h----cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCC
Q 042374 188 -TTGSRIIITTRDKQVLD-K----CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNP 255 (714)
Q Consensus 188 -~~gs~IliTtR~~~v~~-~----~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 255 (714)
..+..||.||...+... . ......++++..+.++..++|..++.+..... + .....+++.+.|.-
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-~--~~~~~la~~t~g~s 337 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-D--VDLEELAELTEGAS 337 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-c--CCHHHHHHHcCCCC
Confidence 13456777776543221 1 12356799999999999999988764332211 1 12345666666654
No 108
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=2.9e-05 Score=85.03 Aligned_cols=190 Identities=11% Similarity=0.080 Sum_probs=106.4
Q ss_pred CCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHH
Q 042374 56 LDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVIS 135 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (714)
...+||.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+-..-....+-. +..+.. ....-.
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p-C~~C~~------~~~~~~- 87 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP-CQECIE------NVNNSL- 87 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc-hhHHHH------hhcCCC-
Confidence 3458999999999999885432 3567789999999999999999986532100000000 000000 000000
Q ss_pred HHhCCCCCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEE-EEcCChhHHHh-cC
Q 042374 136 QVLGDKNLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRII-ITTRDKQVLDK-CG 207 (714)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~Il-iTtR~~~v~~~-~~ 207 (714)
.+...+.......+..+.+.+.+ .+++-++|+|+++.. ...++.|+..+......+.+| +|++...+... ..
T Consensus 88 Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~S 167 (725)
T PRK07133 88 DIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILS 167 (725)
T ss_pred cEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHh
Confidence 00000000001122223333333 356669999999765 355677776665444454444 55554444432 23
Q ss_pred CCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCCh
Q 042374 208 VNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPL 256 (714)
Q Consensus 208 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 256 (714)
....+++.+++.++..+.+...+........ .+.+..+++.++|.+-
T Consensus 168 Rcq~ieF~~L~~eeI~~~L~~il~kegI~id--~eAl~~LA~lS~GslR 214 (725)
T PRK07133 168 RVQRFNFRRISEDEIVSRLEFILEKENISYE--KNALKLIAKLSSGSLR 214 (725)
T ss_pred hceeEEccCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 3468999999999999888776533221111 1456778888888764
No 109
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.28 E-value=9.8e-07 Score=64.98 Aligned_cols=58 Identities=24% Similarity=0.252 Sum_probs=45.7
Q ss_pred ccceEecccccceEeccc-cCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCC
Q 042374 519 SVTKLILWETAIKEVPSS-VGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCF 576 (714)
Q Consensus 519 ~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 576 (714)
+|++|++.+|.++.+|.. +..+++|++|++++|.+...-+..|.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 567788888888888754 7788888888888887766666677888888888888875
No 110
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=7.2e-05 Score=84.46 Aligned_cols=189 Identities=12% Similarity=0.029 Sum_probs=106.6
Q ss_pred CCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHH
Q 042374 56 LDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVIS 135 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (714)
..++||.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+.-..... .-. +..+.. -+.+..
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~-~~p----Cg~C~s----C~~~~~ 83 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPT-STP----CGECDS----CVALAP 83 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCC-CCC----CcccHH----HHHHHc
Confidence 3558999999999999886432 245688999999999999999998763210000 000 000000 000000
Q ss_pred H------HhCCCCCcccchhhHHHHHHH-----hcCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEc-CChhH
Q 042374 136 Q------VLGDKNLKIGTLVIHQNIRKR-----LRQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITT-RDKQV 202 (714)
Q Consensus 136 ~------~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTt-R~~~v 202 (714)
. +...+......++.++.+.+. ..++.-++|||+++.. ....+.|+..+......+.+|++| ....+
T Consensus 84 g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kL 163 (824)
T PRK07764 84 GGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKV 163 (824)
T ss_pred CCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 0 000000000112222223222 2355568899999876 355667777666555566555554 44444
Q ss_pred HHh-cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCCh
Q 042374 203 LDK-CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPL 256 (714)
Q Consensus 203 ~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 256 (714)
... ....+.|++..++.++..+++.+.+-...... -.+....|++.++|.+.
T Consensus 164 l~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i--d~eal~lLa~~sgGdlR 216 (824)
T PRK07764 164 IGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV--EPGVLPLVIRAGGGSVR 216 (824)
T ss_pred hHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 432 23456899999999999988877653322111 11345677888888774
No 111
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=3.4e-05 Score=80.59 Aligned_cols=179 Identities=14% Similarity=0.119 Sum_probs=103.0
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhc--------ccceEEeeechhcccccCh
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRH--------FQGKCFMANVREESNKMGA 126 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~--------f~~~~~~~~~~~~~~~~~~ 126 (714)
..++++|.+..++.+.+.+..+ .-.+.+.++|++|+||||+|+.+++.+... |...+.-. . .......
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l--~-~~~~~~~ 90 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL--D-AASNNSV 90 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe--c-cccCCCH
Confidence 3456899999999999988543 234688899999999999999998875431 11111100 0 0000001
Q ss_pred HHHHHHHHHHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEc-CChhHHH
Q 042374 127 IHVRDEVISQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITT-RDKQVLD 204 (714)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTt-R~~~v~~ 204 (714)
+..++++.++.. .-..+++-++|+|+++.. ...++.+...+......+.+|+++ ....+..
T Consensus 91 -~~i~~l~~~~~~----------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 91 -DDIRNLIDQVRI----------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153 (367)
T ss_pred -HHHHHHHHHHhh----------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCH
Confidence 111122211100 001244558999999754 234566655554333445555554 3333322
Q ss_pred h-cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCCh
Q 042374 205 K-CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPL 256 (714)
Q Consensus 205 ~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 256 (714)
. ......++++++++++....+...+......-+ .+.+..+++.++|.+-
T Consensus 154 ~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~--~~al~~l~~~~~gdlr 204 (367)
T PRK14970 154 TILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE--DDALHIIAQKADGALR 204 (367)
T ss_pred HHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhCCCCHH
Confidence 2 223457899999999999988887654332111 1567778888888665
No 112
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.26 E-value=3.1e-05 Score=88.53 Aligned_cols=195 Identities=15% Similarity=0.125 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHhccCCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcc------cceE
Q 042374 39 KVQKWRDALTEASNSTDLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHF------QGKC 112 (714)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f------~~~~ 112 (714)
.+.++...+.+.+....-+.+|||+.++.++.+.|.... ..-+.++|++|+||||+|+.+++++.... ...+
T Consensus 169 ~l~~~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i 246 (852)
T TIGR03345 169 ALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRL 246 (852)
T ss_pred hHHHHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeE
Confidence 455666666666665577889999999999999886543 23456999999999999999999875431 1223
Q ss_pred EeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHh--cCCcEEEEEeCCCCCH------HHHH---HHh
Q 042374 113 FMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRL--RQVKMLIVLDAVHDGF------TQLE---SLA 181 (714)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~------~~~~---~l~ 181 (714)
|......... +.. ......+.++.+.+.+ .+++.+|++|++.... ...+ .+.
T Consensus 247 ~~l~l~~l~a----------------g~~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lk 309 (852)
T TIGR03345 247 LSLDLGLLQA----------------GAS-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLK 309 (852)
T ss_pred EEeehhhhhc----------------ccc-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhh
Confidence 3221111000 000 0001111112222222 2568999999984420 1111 233
Q ss_pred cCCCCCCCC-cEEEEEcCChhHHH-------hcCCCeEEecCCCCHHHHHHHHHHhhhhcCC-CC-hhHHHHHHHHHHHh
Q 042374 182 GELDKFTTG-SRIIITTRDKQVLD-------KCGVNYVYEVEGLEHNKAFELFYRKAFRQNN-YP-PDFLGLSLEVVHYA 251 (714)
Q Consensus 182 ~~l~~~~~g-s~IliTtR~~~v~~-------~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~-~~-~~~~~~~~~i~~~~ 251 (714)
..+ .+| -++|-||...+... ....-+.+.+++++.++..+++....-.-.. .. .-..+....+++.+
T Consensus 310 p~l---~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls 386 (852)
T TIGR03345 310 PAL---ARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELS 386 (852)
T ss_pred HHh---hCCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHc
Confidence 322 333 34555555432211 1122358999999999999997544321110 11 01124556666666
Q ss_pred cCCC
Q 042374 252 RNNP 255 (714)
Q Consensus 252 ~g~P 255 (714)
.+..
T Consensus 387 ~ryi 390 (852)
T TIGR03345 387 HRYI 390 (852)
T ss_pred cccc
Confidence 6544
No 113
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=0.00011 Score=79.39 Aligned_cols=193 Identities=12% Similarity=0.094 Sum_probs=109.8
Q ss_pred CCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcc--cceEEeeechhcccccChHHHHHHH
Q 042374 56 LDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHF--QGKCFMANVREESNKMGAIHVRDEV 133 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (714)
..++||-+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+-... .... +..+ ...+.+
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~p-------Cg~C----~sC~~i 82 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEP-------CNTC----EQCRKV 82 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCC-------Cccc----HHHHHH
Confidence 3558999988888888885431 246788999999999999999998653211 0000 0000 011111
Q ss_pred HHHH----hCCCCCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCC-hhH
Q 042374 134 ISQV----LGDKNLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRD-KQV 202 (714)
Q Consensus 134 ~~~~----~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~-~~v 202 (714)
.... ..-+.......+..+.+.+.+ .+++-++|+|+++.. ....+.|...+........+|++|.. ..+
T Consensus 83 ~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kl 162 (624)
T PRK14959 83 TQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKF 162 (624)
T ss_pred hcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhh
Confidence 1000 000000001112222232222 356679999999765 35567777666543445556655544 333
Q ss_pred HHh-cCCCeEEecCCCCHHHHHHHHHHhhhhcCC-CChhHHHHHHHHHHHhcCCC-hhhHHhhh
Q 042374 203 LDK-CGVNYVYEVEGLEHNKAFELFYRKAFRQNN-YPPDFLGLSLEVVHYARNNP-LALEVLGS 263 (714)
Q Consensus 203 ~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~P-lai~~~~~ 263 (714)
... ......+++++++.++..+.+.+.+..... ..+ +.+..|++.++|.. .|+..+..
T Consensus 163 l~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~---eal~lIA~~s~GdlR~Al~lLeq 223 (624)
T PRK14959 163 PVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDP---AAVRLIARRAAGSVRDSMSLLGQ 223 (624)
T ss_pred hHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHHHHHH
Confidence 322 222357899999999999988876644332 222 56778888888865 55555543
No 114
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.25 E-value=1.3e-05 Score=90.84 Aligned_cols=170 Identities=17% Similarity=0.245 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhccCCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhc-----c-cceE
Q 042374 39 KVQKWRDALTEASNSTDLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRH-----F-QGKC 112 (714)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~-----f-~~~~ 112 (714)
.+.++...+.+.+....-+.++||+++++.+.+.|.... ..-+.++|++|+|||++|+.+++++... + ...+
T Consensus 164 ~l~~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~ 241 (731)
T TIGR02639 164 ALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKI 241 (731)
T ss_pred HHHHHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeE
Confidence 344555566655554466789999999999999886542 3346799999999999999999976432 1 2334
Q ss_pred EeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHh-cCCcEEEEEeCCCCC----------HHHHHHHh
Q 042374 113 FMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRL-RQVKMLIVLDAVHDG----------FTQLESLA 181 (714)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~~l~ 181 (714)
|..+. ..+ .. +.... ....+....+.+.+ ..++.+|++|+++.. .+.-+.+.
T Consensus 242 ~~~~~---------~~l----~a---~~~~~-g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~ 304 (731)
T TIGR02639 242 YSLDM---------GSL----LA---GTKYR-GDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLK 304 (731)
T ss_pred EEecH---------HHH----hh---hcccc-chHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHH
Confidence 43211 111 10 00000 01111113333333 346789999998532 12223343
Q ss_pred cCCCCCCCCc-EEEEEcCChhHHH------h-cCCCeEEecCCCCHHHHHHHHHHhh
Q 042374 182 GELDKFTTGS-RIIITTRDKQVLD------K-CGVNYVYEVEGLEHNKAFELFYRKA 230 (714)
Q Consensus 182 ~~l~~~~~gs-~IliTtR~~~v~~------~-~~~~~~~~l~~L~~~~~~~l~~~~~ 230 (714)
..+ ..|. ++|-+|...+... . ...-+.++++.++.++..+++....
T Consensus 305 ~~l---~~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 305 PAL---SSGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHH---hCCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 333 2332 3444444322111 1 1123578999999999999998654
No 115
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=7.2e-05 Score=79.83 Aligned_cols=197 Identities=11% Similarity=0.014 Sum_probs=107.2
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
....++|.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.++..+...-. .-.-. +..+.+...+...-.
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~-~~~~p----c~~c~nc~~i~~g~~ 87 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNP-QEGEP----CGKCENCVEIDKGSF 87 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCC-CCCCC----CCccHHHHHHhcCCC
Confidence 34558999999999999885432 2456778999999999999999986531100 00000 000000000000000
Q ss_pred HHHhCCCCCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEE-EcCChhHHHh-c
Q 042374 135 SQVLGDKNLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIII-TTRDKQVLDK-C 206 (714)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~Ili-TtR~~~v~~~-~ 206 (714)
..+..-+.......+..+.+.+.. .+++-++|+|+++.. ....+.+...+....+...+|+ |++...+... .
T Consensus 88 ~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~ 167 (486)
T PRK14953 88 PDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTIL 167 (486)
T ss_pred CcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHH
Confidence 000000000001122222333322 356679999999765 3456667666654444555554 4443333322 2
Q ss_pred CCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhH
Q 042374 207 GVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALE 259 (714)
Q Consensus 207 ~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 259 (714)
.....+.+.+++.++....+...+-...... -.+.+..+++.++|.+..+.
T Consensus 168 SRc~~i~f~~ls~~el~~~L~~i~k~egi~i--d~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 168 SRCQRFIFSKPTKEQIKEYLKRICNEEKIEY--EEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred HhceEEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 2345789999999999998887764332111 11556778888898776443
No 116
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.23 E-value=2.2e-05 Score=77.53 Aligned_cols=153 Identities=14% Similarity=0.170 Sum_probs=82.1
Q ss_pred cccchhhHHHHHhhhcc-------------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcc--cceEEeeechhcccc
Q 042374 59 FVGLNSRIEEVKSLLCL-------------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHF--QGKCFMANVREESNK 123 (714)
Q Consensus 59 ~vGr~~~~~~l~~~l~~-------------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~ 123 (714)
++|.+..++++.++... ..+....+.++|++|+||||+|+.+++.+...- ....++. ++.
T Consensus 8 ~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~----~~~- 82 (261)
T TIGR02881 8 MVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE----VER- 82 (261)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE----ecH-
Confidence 67877776665543211 112345678999999999999999998653211 1111221 110
Q ss_pred cChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHhc-CCcEEEEEeCCCCC---------HHHHHHHhcCCCCCCCCcEE
Q 042374 124 MGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRLR-QVKMLIVLDAVHDG---------FTQLESLAGELDKFTTGSRI 193 (714)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~---------~~~~~~l~~~l~~~~~gs~I 193 (714)
.+ +.....|.. . ..+.+.+. ...-+|++|+++.. .+..+.+...+........+
T Consensus 83 ---~~----l~~~~~g~~------~---~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~v 146 (261)
T TIGR02881 83 ---AD----LVGEYIGHT------A---QKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVL 146 (261)
T ss_pred ---HH----hhhhhccch------H---HHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEE
Confidence 11 111111111 0 11122221 12348899999642 23455666555443333455
Q ss_pred EEEcCChhHHH------h--cCCCeEEecCCCCHHHHHHHHHHhhhh
Q 042374 194 IITTRDKQVLD------K--CGVNYVYEVEGLEHNKAFELFYRKAFR 232 (714)
Q Consensus 194 liTtR~~~v~~------~--~~~~~~~~l~~L~~~~~~~l~~~~~~~ 232 (714)
++++...+... . -.....+++++++.+|..+++.+.+..
T Consensus 147 ila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred EecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 55554433211 1 123456899999999999999877643
No 117
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=3.3e-05 Score=77.85 Aligned_cols=174 Identities=17% Similarity=0.176 Sum_probs=109.7
Q ss_pred CCCCCcccchhhHHHHHhhhcc--cCCCeEEEEEEccCchhHHHHHHHHHHHHhhccc--ceEEeeechhcccccChHHH
Q 042374 54 TDLDGFVGLNSRIEEVKSLLCL--ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQ--GKCFMANVREESNKMGAIHV 129 (714)
Q Consensus 54 ~~~~~~vGr~~~~~~l~~~l~~--~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~ 129 (714)
..+..++||+.|++.+.+++.. .....+.+.|.|-+|.|||.+...++.+...... .++++. +..-.....+
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~in----c~sl~~~~ai 222 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYIN----CTSLTEASAI 222 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEe----eccccchHHH
Confidence 3788999999999999999864 3345678899999999999999999987665443 346665 3333455667
Q ss_pred HHHHHHHHhCCCCCcccchhhHHHHHHHhcCC--cEEEEEeCCCCCH-HHHHHHhcCCCCC-CCCcEEEEEcC--Chh--
Q 042374 130 RDEVISQVLGDKNLKIGTLVIHQNIRKRLRQV--KMLIVLDAVHDGF-TQLESLAGELDKF-TTGSRIIITTR--DKQ-- 201 (714)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~-~~~~~l~~~l~~~-~~gs~IliTtR--~~~-- 201 (714)
+..|...+...........+..+.+.+..... .+|+|+|++|..- ..-..+...+.|. -+++++|+.-- .-+
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlT 302 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLT 302 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHH
Confidence 77777775333222222223336666666433 5999999997641 1112233333322 24666554321 111
Q ss_pred --HHHhc-----CCCeEEecCCCCHHHHHHHHHHhhh
Q 042374 202 --VLDKC-----GVNYVYEVEGLEHNKAFELFYRKAF 231 (714)
Q Consensus 202 --v~~~~-----~~~~~~~l~~L~~~~~~~l~~~~~~ 231 (714)
..... -....+..++.+.++..+++..+..
T Consensus 303 dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 303 DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS 339 (529)
T ss_pred HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 11111 1235788999999999999998863
No 118
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=4.6e-05 Score=83.14 Aligned_cols=194 Identities=10% Similarity=0.094 Sum_probs=107.7
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhc--ccceEEeeec-hhcccccChHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRH--FQGKCFMANV-REESNKMGAIHVRD 131 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~-~~~~~~~~~~~~~~ 131 (714)
...++||.+..++.|.+++..+ .-.+.+.++|+.|+||||+|+.+++.+.-. .+...|.... ..+..+ ...+
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C----~sC~ 88 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGEC----ESCR 88 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccC----HHHH
Confidence 3456899999999998888543 224568899999999999999999875321 1101111100 000000 0111
Q ss_pred HHHHHH-hC---CCCCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEE-EcCCh
Q 042374 132 EVISQV-LG---DKNLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIII-TTRDK 200 (714)
Q Consensus 132 ~~~~~~-~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~Ili-TtR~~ 200 (714)
++...- .. -+.......+.++.+.+.+ .+++-++|+|+++.. ....+.|...+......+.+|+ |++..
T Consensus 89 ~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~ 168 (620)
T PRK14954 89 DFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELH 168 (620)
T ss_pred HHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 110000 00 0000111122232232222 345558899999765 2446677776655444555554 44444
Q ss_pred hHHHh-cCCCeEEecCCCCHHHHHHHHHHhhhhcC-CCChhHHHHHHHHHHHhcCCCh
Q 042374 201 QVLDK-CGVNYVYEVEGLEHNKAFELFYRKAFRQN-NYPPDFLGLSLEVVHYARNNPL 256 (714)
Q Consensus 201 ~v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pl 256 (714)
.+... ......+++.+++.++....+.+.+.... ..++ +.+..+++.++|..-
T Consensus 169 kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~---eal~~La~~s~Gdlr 223 (620)
T PRK14954 169 KIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDA---DALQLIARKAQGSMR 223 (620)
T ss_pred hhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHhCCCHH
Confidence 44332 33457899999999999888877654322 1222 567788889998654
No 119
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=8e-05 Score=78.99 Aligned_cols=186 Identities=13% Similarity=0.158 Sum_probs=104.9
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhc---cc---ceEEeeechhcccc--cCh
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRH---FQ---GKCFMANVREESNK--MGA 126 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~---f~---~~~~~~~~~~~~~~--~~~ 126 (714)
..+.++|.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+... .+ +..... ....... .++
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~-C~~i~~~~~~d~ 92 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS-CKEISSGTSLDV 92 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH-HHHHhcCCCCce
Confidence 44568999999999998885432 24678899999999999999999865321 00 000000 0000000 000
Q ss_pred HHHHHHHHHHHhCCCCCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCC-
Q 042374 127 IHVRDEVISQVLGDKNLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRD- 199 (714)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~- 199 (714)
. .+-|.. ....+..+.+.+.+ .+++-++|+|+++.. ....+.|...+......+.+|++|..
T Consensus 93 ~--------~i~g~~---~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~ 161 (451)
T PRK06305 93 L--------EIDGAS---HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEI 161 (451)
T ss_pred E--------Eeeccc---cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCCh
Confidence 0 000000 00111222222222 256678899998754 24456666666554456666665543
Q ss_pred hhHHHh-cCCCeEEecCCCCHHHHHHHHHHhhhhcC-CCChhHHHHHHHHHHHhcCCCh
Q 042374 200 KQVLDK-CGVNYVYEVEGLEHNKAFELFYRKAFRQN-NYPPDFLGLSLEVVHYARNNPL 256 (714)
Q Consensus 200 ~~v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pl 256 (714)
..+... ......++++++++++....+.+.+-... ..+ .+.+..+++.++|.+-
T Consensus 162 ~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~---~~al~~L~~~s~gdlr 217 (451)
T PRK06305 162 HKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS---REALLPIARAAQGSLR 217 (451)
T ss_pred HhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHH
Confidence 333222 22346799999999999988877654322 122 1467788888888664
No 120
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.22 E-value=4.4e-05 Score=80.71 Aligned_cols=179 Identities=16% Similarity=0.223 Sum_probs=99.9
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcc--cceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHF--QGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKR 157 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (714)
...+.|+|.+|+|||+|++.+++++.++. ..++|+. ..+...++...+... . ...+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~----------~~~~~~~~~~~~~~~------~---~~~~~~~ 196 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS----------SEKFTNDFVNALRNN------K---MEEFKEK 196 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE----------HHHHHHHHHHHHHcC------C---HHHHHHH
Confidence 35688999999999999999999876653 2344543 112223333332211 1 1233344
Q ss_pred hcCCcEEEEEeCCCCC--HHH-HHHHhcCCCC-CCCCcEEEEEcCCh-hHH--------HhcCCCeEEecCCCCHHHHHH
Q 042374 158 LRQVKMLIVLDAVHDG--FTQ-LESLAGELDK-FTTGSRIIITTRDK-QVL--------DKCGVNYVYEVEGLEHNKAFE 224 (714)
Q Consensus 158 l~~k~~LlVlDdv~~~--~~~-~~~l~~~l~~-~~~gs~IliTtR~~-~v~--------~~~~~~~~~~l~~L~~~~~~~ 224 (714)
+.+ .-+||+||++.. .+. .+.+...+.. ...+..||+|+... ... ..+.....+++++.+.++..+
T Consensus 197 ~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 197 YRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLA 275 (405)
T ss_pred HHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHH
Confidence 433 348889999643 111 1222222211 12345677777632 211 112233578999999999999
Q ss_pred HHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHhhhhh------ccC--CHHHHHHHHHHH
Q 042374 225 LFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVLGSSL------YQK--SKQQWEDRLHNL 280 (714)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l------~~~--~~~~w~~~l~~l 280 (714)
++.+.+......-+ .++...|++.+.|..-.+.-+-..+ .++ +.+..+.++...
T Consensus 276 il~~~~~~~~~~l~--~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 276 ILQKKAEEEGLELP--DEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHHHHHHcCCCCC--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 99988754322111 2677788888888765443322211 111 455666666554
No 121
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.22 E-value=9.1e-05 Score=75.76 Aligned_cols=148 Identities=17% Similarity=0.190 Sum_probs=85.6
Q ss_pred CCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHH
Q 042374 56 LDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVIS 135 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (714)
.++++|.+...+.+..++..+ .-...+.++|++|+|||++|+.+++..... ...+. .+. .. ....++.+.
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~---~~~i~----~~~-~~-~~~i~~~l~ 89 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAE---VLFVN----GSD-CR-IDFVRNRLT 89 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCcc---ceEec----cCc-cc-HHHHHHHHH
Confidence 356899999999999888542 235677779999999999999999876332 22332 111 11 111111111
Q ss_pred HHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCChhHH-H-hcCCCeE
Q 042374 136 QVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG--FTQLESLAGELDKFTTGSRIIITTRDKQVL-D-KCGVNYV 211 (714)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~l~~~l~~~~~gs~IliTtR~~~v~-~-~~~~~~~ 211 (714)
..... ....+.+-++|+|+++.. ....+.+...+.....++++|+||...... . .......
T Consensus 90 ~~~~~---------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 90 RFAST---------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred HHHHh---------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceE
Confidence 11000 001234558899999754 122333433344445677888888654311 1 1122346
Q ss_pred EecCCCCHHHHHHHHHH
Q 042374 212 YEVEGLEHNKAFELFYR 228 (714)
Q Consensus 212 ~~l~~L~~~~~~~l~~~ 228 (714)
+.++..+.++..+++..
T Consensus 155 i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 155 IDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 77888888888776654
No 122
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.22 E-value=2.5e-05 Score=83.67 Aligned_cols=199 Identities=14% Similarity=0.195 Sum_probs=108.8
Q ss_pred cccchhh--HHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhccc--ceEEeeechhcccccChHHHHHHHH
Q 042374 59 FVGLNSR--IEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQ--GKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 59 ~vGr~~~--~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
++|.... +....++..........+.|+|.+|+|||+|++.+++++..++. .++|+. ......++.
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~----------~~~~~~~~~ 194 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT----------SEKFTNDFV 194 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHH
Confidence 4565543 23333333222223456889999999999999999998877643 244443 112222333
Q ss_pred HHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCC--HH-HHHHHhcCCCC-CCCCcEEEEEcCChh---------
Q 042374 135 SQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG--FT-QLESLAGELDK-FTTGSRIIITTRDKQ--------- 201 (714)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~-~~~~l~~~l~~-~~~gs~IliTtR~~~--------- 201 (714)
..+.. . ..+.+.+.++ +.-+||+||++.. .. ..+.+...+.. ...|..|++|+....
T Consensus 195 ~~~~~-~--------~~~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~ 264 (450)
T PRK00149 195 NALRN-N--------TMEEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEER 264 (450)
T ss_pred HHHHc-C--------cHHHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHH
Confidence 33211 0 0133444444 3448899999643 11 11222222111 123445777776431
Q ss_pred HHHhcCCCeEEecCCCCHHHHHHHHHHhhhhcC-CCChhHHHHHHHHHHHhcCCChhhHHhhhhh------ccC--CHHH
Q 042374 202 VLDKCGVNYVYEVEGLEHNKAFELFYRKAFRQN-NYPPDFLGLSLEVVHYARNNPLALEVLGSSL------YQK--SKQQ 272 (714)
Q Consensus 202 v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l------~~~--~~~~ 272 (714)
+...+....++++++.+.++..+++.+.+.... ..++ ++...|++.+.|..-.+.-+-..+ .++ +...
T Consensus 265 l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~---e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~ 341 (450)
T PRK00149 265 LRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPD---EVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLEL 341 (450)
T ss_pred HHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHH
Confidence 112223345799999999999999999875432 1222 567788888888765433221111 122 5666
Q ss_pred HHHHHHHH
Q 042374 273 WEDRLHNL 280 (714)
Q Consensus 273 w~~~l~~l 280 (714)
.+.++..+
T Consensus 342 ~~~~l~~~ 349 (450)
T PRK00149 342 AKEALKDL 349 (450)
T ss_pred HHHHHHHh
Confidence 66777655
No 123
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=6.8e-07 Score=84.07 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=30.1
Q ss_pred CCCCCCCCEEECCCCCCcccch--hhccCCCCCeeccccCccccccCC
Q 042374 641 NGCLSSLEYLDLSGNDFESLPA--SIKQLSRLRKLHLCYCDKLQSIPE 686 (714)
Q Consensus 641 ~~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~l~~~~~~~~lp~ 686 (714)
+..+|.+..|+|+.|+|.++.+ .+.++++|.-|.+.++|+...+..
T Consensus 220 se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 220 SEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred CCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 3445666667777777765543 466777777777777777665553
No 124
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.18 E-value=3.6e-05 Score=81.51 Aligned_cols=158 Identities=15% Similarity=0.193 Sum_probs=91.2
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhccc--ceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHFQ--GKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKR 157 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (714)
...+.|+|.+|+|||+|++.+++.+.+... .++|+. ..+...++...+... . .+.+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~----------~~~f~~~~~~~~~~~------~---~~~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----------SEKFLNDLVDSMKEG------K---LNEFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHhcc------c---HHHHHHH
Confidence 345899999999999999999998766542 344543 122333443332111 0 1233444
Q ss_pred hcCCcEEEEEeCCCCC--HHHH-HHHhcCCCC-CCCCcEEEEEcC-ChhHHH--------hcCCCeEEecCCCCHHHHHH
Q 042374 158 LRQVKMLIVLDAVHDG--FTQL-ESLAGELDK-FTTGSRIIITTR-DKQVLD--------KCGVNYVYEVEGLEHNKAFE 224 (714)
Q Consensus 158 l~~k~~LlVlDdv~~~--~~~~-~~l~~~l~~-~~~gs~IliTtR-~~~v~~--------~~~~~~~~~l~~L~~~~~~~ 224 (714)
...+.-+|++||++.. ...+ +.+...+.. ...|..||+||. .+.-.. .+.....+++++.+.++..+
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 4445568999999743 1111 222222211 123456888874 433211 12234578999999999999
Q ss_pred HHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhh
Q 042374 225 LFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLAL 258 (714)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 258 (714)
++.+.+......-+ .++...|++.+.|.--.+
T Consensus 271 IL~~~~~~~~~~l~--~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 271 IARKMLEIEHGELP--EEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHHHhcCCCCC--HHHHHHHHhccccCHHHH
Confidence 99888753222111 256777888777765443
No 125
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.18 E-value=1.1e-06 Score=64.77 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=19.0
Q ss_pred CCCEEEecCCCCCCCCchhhhccccccccccCCccccccCc
Q 042374 566 SLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPS 606 (714)
Q Consensus 566 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~ 606 (714)
+|++|++++|.+...-+..|..+++|++|++++|.++.++.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~ 42 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP 42 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH
Confidence 34445555444332222344555555555555555544443
No 126
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.18 E-value=2.3e-08 Score=104.64 Aligned_cols=19 Identities=42% Similarity=0.754 Sum_probs=9.9
Q ss_pred CccccCCCCCCEEecCCCC
Q 042374 467 PSSIQNFNHLSMLCFEGCK 485 (714)
Q Consensus 467 p~~~~~l~~L~~L~l~~~~ 485 (714)
|-+|..+..|++|.+.+|.
T Consensus 102 pi~ifpF~sLr~LElrg~~ 120 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCD 120 (1096)
T ss_pred CceeccccceeeEEecCcc
Confidence 3444555555555555543
No 127
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=5.7e-05 Score=80.55 Aligned_cols=190 Identities=11% Similarity=0.051 Sum_probs=108.1
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhh-cccc--eEEeeechhcccccChHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISR-HFQG--KCFMANVREESNKMGAIHVRD 131 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~-~f~~--~~~~~~~~~~~~~~~~~~~~~ 131 (714)
..+++||-+...+.|...+..+. -.+++.++|+.|+||||+|+.+++.+-. .... -+..+ .. ..
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C-----~~-------C~ 78 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC-----IQ-------CQ 78 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc-----HH-------HH
Confidence 34568999999999998885432 3456789999999999999999986531 1000 00000 00 00
Q ss_pred HHHHH----HhCCCCCcccchhhHHHHHHH-----hcCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCCh-
Q 042374 132 EVISQ----VLGDKNLKIGTLVIHQNIRKR-----LRQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDK- 200 (714)
Q Consensus 132 ~~~~~----~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~- 200 (714)
.+... +...+.......+.++.+.+. ..+++-++|+|+++.. .+..+.|+..+....+.+.+|++|.+.
T Consensus 79 ~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~ 158 (535)
T PRK08451 79 SALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPL 158 (535)
T ss_pred HHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChh
Confidence 00000 000000000011122111111 1245568899999765 355667777665555566666666553
Q ss_pred hHHH-hcCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhH
Q 042374 201 QVLD-KCGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALE 259 (714)
Q Consensus 201 ~v~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 259 (714)
.+.. .......+++.+++.++..+.+.+.+-.....-. .+.+..|++.++|.+--+.
T Consensus 159 kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~--~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 159 KLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE--PEALEILARSGNGSLRDTL 216 (535)
T ss_pred hCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHH
Confidence 2221 1223468999999999999988776543322111 2567788888999885443
No 128
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.18 E-value=2e-05 Score=75.14 Aligned_cols=180 Identities=17% Similarity=0.211 Sum_probs=109.3
Q ss_pred CCCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHh--hcccceEEeeechhcccccChHHHHH
Q 042374 54 TDLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQIS--RHFQGKCFMANVREESNKMGAIHVRD 131 (714)
Q Consensus 54 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~--~~f~~~~~~~~~~~~~~~~~~~~~~~ 131 (714)
...++++|.+..++.|.+.+.. ........+|++|.|||+-|+.++.++- +-|.+++-=.+ .+...+.. +.+
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln---aSderGis-vvr 106 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN---ASDERGIS-VVR 106 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc---cccccccc-chh
Confidence 3567799999999999988854 3467888999999999999999998653 23444433211 11111111 111
Q ss_pred HHHHHHhCCCCCcccchhhHHHHHHHh------cCCc-EEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCChh-H
Q 042374 132 EVISQVLGDKNLKIGTLVIHQNIRKRL------RQVK-MLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDKQ-V 202 (714)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~l~~~l------~~k~-~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~~-v 202 (714)
+-... . ..+.-.. ..++ -.+|||+.+.. .+.|..+...+......++.++.+.... +
T Consensus 107 ~Kik~-----------f---akl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsri 172 (346)
T KOG0989|consen 107 EKIKN-----------F---AKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRI 172 (346)
T ss_pred hhhcC-----------H---HHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhC
Confidence 10000 0 0110000 0112 47889999876 5778888888776666666554444332 2
Q ss_pred HHh-cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCC
Q 042374 203 LDK-CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNP 255 (714)
Q Consensus 203 ~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 255 (714)
... .....-++.++|..++...-+...+..+.-.-.+ +..+.|++.++|--
T Consensus 173 i~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~--~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 173 IRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDD--DALKLIAKISDGDL 224 (346)
T ss_pred ChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCH--HHHHHHHHHcCCcH
Confidence 221 1223468899999999998888887554432221 56678888888753
No 129
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.17 E-value=3.8e-06 Score=84.28 Aligned_cols=93 Identities=13% Similarity=0.109 Sum_probs=59.3
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHHhh-cccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccch--h---hH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQISR-HFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTL--V---IH 151 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~ 151 (714)
+..+..+|+|++|+||||||+.+|+.+.. +|+..+|+..+.+. ...+.++++++...+........... . ..
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER--~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ 244 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMV 244 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc--hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHH
Confidence 34567899999999999999999997643 79999999854331 13677777777543322221111111 1 11
Q ss_pred -HHHHHH-hcCCcEEEEEeCCCC
Q 042374 152 -QNIRKR-LRQVKMLIVLDAVHD 172 (714)
Q Consensus 152 -~~l~~~-l~~k~~LlVlDdv~~ 172 (714)
+..... -.+++++|++|++..
T Consensus 245 ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 245 IEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHcCCCEEEEEEChHH
Confidence 111111 268999999999954
No 130
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.16 E-value=2.6e-05 Score=89.59 Aligned_cols=169 Identities=18% Similarity=0.201 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHhccCCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhc-----c-cceE
Q 042374 39 KVQKWRDALTEASNSTDLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRH-----F-QGKC 112 (714)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~-----f-~~~~ 112 (714)
.+.++...+.+.+....-+.++||+++++++.+.|.... ..-+.++|++|+|||++|..++.++... . ...+
T Consensus 161 ~l~~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i 238 (821)
T CHL00095 161 TLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLV 238 (821)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeE
Confidence 345555556555544456779999999999999996543 2345699999999999999999976431 1 2344
Q ss_pred EeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHh-cCCcEEEEEeCCCCC---------HHHHHHHhc
Q 042374 113 FMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRL-RQVKMLIVLDAVHDG---------FTQLESLAG 182 (714)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~---------~~~~~~l~~ 182 (714)
|..+. ..+ + .|... ..+..+....+.+.+ ..++.+|++|++... .+.-+.|..
T Consensus 239 ~~l~~---------~~l----~---ag~~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp 301 (821)
T CHL00095 239 ITLDI---------GLL----L---AGTKY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKP 301 (821)
T ss_pred EEeeH---------HHH----h---ccCCC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHH
Confidence 43211 111 1 11111 111111222333322 456899999998421 011222322
Q ss_pred CCCCCCCC-cEEEEEcCChhHHH-------hcCCCeEEecCCCCHHHHHHHHHHh
Q 042374 183 ELDKFTTG-SRIIITTRDKQVLD-------KCGVNYVYEVEGLEHNKAFELFYRK 229 (714)
Q Consensus 183 ~l~~~~~g-s~IliTtR~~~v~~-------~~~~~~~~~l~~L~~~~~~~l~~~~ 229 (714)
.+ .+| -++|.+|...+... .......+.+...+.++..+++...
T Consensus 302 ~l---~rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 302 AL---ARGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HH---hCCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 22 222 34555555443321 1123356889999999998888654
No 131
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.16 E-value=4.1e-07 Score=96.49 Aligned_cols=236 Identities=19% Similarity=0.111 Sum_probs=112.6
Q ss_pred CCcccccCCCCCCccccC-CcccccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCC
Q 042374 405 ENLTELSLPYSKVEQSWG-GKRLLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEG 483 (714)
Q Consensus 405 ~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~ 483 (714)
..+..+.+..|.+..... ...+.+|..+++..|.+......+..+++|++|++++|.+.. + ..+..++.|+.|++++
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~-i-~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK-L-EGLSTLTLLKELNLSG 149 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccc-c-cchhhccchhhheecc
Confidence 445555566666655332 233666666666666654443335666667777776664332 2 2355555666666666
Q ss_pred CCCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEeccc-cCCCCCCcEEecCCCCCCcccccccc
Q 042374 484 CKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSS-VGCLTNLKVLSLSQCPRLKRISTSIL 562 (714)
Q Consensus 484 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~~ 562 (714)
|.+ ..+...-. ..+++.+++.+|.+..+... ...+.+++.+.+.+|.+... ..+.
T Consensus 150 N~i-~~~~~~~~---------------------l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~ 205 (414)
T KOG0531|consen 150 NLI-SDISGLES---------------------LKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLD 205 (414)
T ss_pred Ccc-hhccCCcc---------------------chhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchH
Confidence 432 22221111 22334444444444444332 34555566666666543221 1222
Q ss_pred CCCCCCEEEecCCCCCCCCchhhhccc--cccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc
Q 042374 563 KLKSLQNLYLIQCFDLENFPEILEKME--YLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL 640 (714)
Q Consensus 563 ~l~~L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 640 (714)
.+..+..+++..|.+... ..+..+. +|+.+++++|.+...+.. +..+..+..|++..+.+..
T Consensus 206 ~~~~l~~~~l~~n~i~~~--~~l~~~~~~~L~~l~l~~n~i~~~~~~--------------~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 206 LLKKLVLLSLLDNKISKL--EGLNELVMLHLRELYLSGNRISRSPEG--------------LENLKNLPVLDLSSNRISN 269 (414)
T ss_pred HHHHHHHhhcccccceec--cCcccchhHHHHHHhcccCcccccccc--------------ccccccccccchhhccccc
Confidence 223333334444433221 1111122 266666666666554321 4555666666666665544
Q ss_pred C---CCCCCCCEEECCCCCCcc---c-chh-hccCCCCCeeccccCcccc
Q 042374 641 N---GCLSSLEYLDLSGNDFES---L-PAS-IKQLSRLRKLHLCYCDKLQ 682 (714)
Q Consensus 641 ~---~~l~~L~~L~L~~n~l~~---l-p~~-l~~l~~L~~L~l~~~~~~~ 682 (714)
. ...+.+..+....+.+.. . ... ....+.++.+.+.+++.-.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 270 LEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred cccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 2 233344444445554431 1 111 3445566666666665443
No 132
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.16 E-value=4e-05 Score=84.56 Aligned_cols=203 Identities=14% Similarity=0.146 Sum_probs=105.7
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhh--cc---cceEEeeechhcccccChHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISR--HF---QGKCFMANVREESNKMGAIHV 129 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~--~f---~~~~~~~~~~~~~~~~~~~~~ 129 (714)
..+.++|++..++.+.+.+.. .....+.|+|++|+||||+|+.+++..+. .+ ....|+..-.. .-..+...+
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~-~l~~d~~~i 228 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGT-TLRWDPREV 228 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEech-hccCCHHHH
Confidence 456789999999988777643 23457899999999999999999875432 11 12233321100 001111111
Q ss_pred HHHH---------------HHHHhCCC------------------CCcccchhhHHHHHHHhcCCcEEEEEeCCCCC-HH
Q 042374 130 RDEV---------------ISQVLGDK------------------NLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG-FT 175 (714)
Q Consensus 130 ~~~~---------------~~~~~~~~------------------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~ 175 (714)
...+ +.. .|.. ....-+......+.+.+..+++.++-|+.|.. ..
T Consensus 229 ~~~llg~~~~~~~~~a~~~l~~-~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 229 TNPLLGSVHDPIYQGARRDLAE-TGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred hHHhcCCccHHHHHHHHHHHHH-cCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 1111 110 0100 00000111125566666777777776655543 23
Q ss_pred HHHHHhcCCCCCCCCcEEEE--EcCChhH-HHhc-CCCeEEecCCCCHHHHHHHHHHhhhhcCC-CChhHHHHHHHHHHH
Q 042374 176 QLESLAGELDKFTTGSRIII--TTRDKQV-LDKC-GVNYVYEVEGLEHNKAFELFYRKAFRQNN-YPPDFLGLSLEVVHY 250 (714)
Q Consensus 176 ~~~~l~~~l~~~~~gs~Ili--TtR~~~v-~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~ 250 (714)
.|+.+...+....+...|++ ||++... .... .....+.+.+++.+|.++++.+.+-.... .. .++...|.+.
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls---~eal~~L~~y 384 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA---AGVEELIARY 384 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHC
Confidence 35555544444444444554 5664431 1111 12246789999999999999887643211 11 2344555555
Q ss_pred hcCCChhhHHhhhh
Q 042374 251 ARNNPLALEVLGSS 264 (714)
Q Consensus 251 ~~g~Plai~~~~~~ 264 (714)
+..-+-+++.++..
T Consensus 385 s~~gRraln~L~~~ 398 (615)
T TIGR02903 385 TIEGRKAVNILADV 398 (615)
T ss_pred CCcHHHHHHHHHHH
Confidence 44445555554443
No 133
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.15 E-value=2.7e-06 Score=81.97 Aligned_cols=93 Identities=14% Similarity=0.110 Sum_probs=59.8
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHh-hcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccc--h---hhH-
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQIS-RHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGT--L---VIH- 151 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~- 151 (714)
..+.++|+|++|+|||||++++++... .+|+..+|+..+.+ +..++.++++++...++-........ . ...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e--r~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE--RPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC--CCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999654 37899999874322 22678888888833322221111111 1 111
Q ss_pred HHHHHH-hcCCcEEEEEeCCCCC
Q 042374 152 QNIRKR-LRQVKMLIVLDAVHDG 173 (714)
Q Consensus 152 ~~l~~~-l~~k~~LlVlDdv~~~ 173 (714)
...... -.+++.++++|++...
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHh
Confidence 222222 2588999999999653
No 134
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=0.00018 Score=78.55 Aligned_cols=190 Identities=11% Similarity=0.018 Sum_probs=107.4
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
..+++||.+..++.|.+++..+. -.+.+.++|+.|+|||++|+.+++.+...-.. . ...+..+. ..+.+.
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~----~-~~pC~~C~----~C~~i~ 83 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP----D-GEPCNECE----ICKAIT 83 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC----C-CCCCCccH----HHHHHh
Confidence 45679999999999999886432 35677889999999999999999865321000 0 00000000 111111
Q ss_pred HHHhCC-----CCCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEE-EEcCChhH
Q 042374 135 SQVLGD-----KNLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRII-ITTRDKQV 202 (714)
Q Consensus 135 ~~~~~~-----~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~Il-iTtR~~~v 202 (714)
.. ... +.......+..+.+.+.. .+++-++|+|+++.. ...++.|...+......+.+| .||....+
T Consensus 84 ~g-~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki 162 (559)
T PRK05563 84 NG-SLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKI 162 (559)
T ss_pred cC-CCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhC
Confidence 00 000 000001122223333332 355668899999865 345677776665433444444 44444433
Q ss_pred HHh-cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChh
Q 042374 203 LDK-CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLA 257 (714)
Q Consensus 203 ~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 257 (714)
... ......+++.+++.++..+.+.+.+-.....-. .+.+..|++.++|.+..
T Consensus 163 ~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~--~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 163 PATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE--DEALRLIARAAEGGMRD 216 (559)
T ss_pred cHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHH
Confidence 322 233467899999999999988877643321111 14567778888887653
No 135
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.12 E-value=4.6e-05 Score=71.87 Aligned_cols=180 Identities=17% Similarity=0.173 Sum_probs=104.4
Q ss_pred CCCCcccchhhHHHHHhhhcc---cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCL---ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRD 131 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~---~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 131 (714)
.-.+|||.++.++.|.-++.. .....--|.++|++|.||||||.-+++++...+. +..........++
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k----~tsGp~leK~gDl----- 94 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK----ITSGPALEKPGDL----- 94 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE----ecccccccChhhH-----
Confidence 345699999988888766653 2334567899999999999999999998765432 1111111111111
Q ss_pred HHHHHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCCHHHHHHHhcC-CC--------CCCCCc-----------
Q 042374 132 EVISQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDGFTQLESLAGE-LD--------KFTTGS----------- 191 (714)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~l~~~-l~--------~~~~gs----------- 191 (714)
..+...|.. .=++.+|++...-...++++.+ +. ..++++
T Consensus 95 --------------------aaiLt~Le~-~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 95 --------------------AAILTNLEE-GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred --------------------HHHHhcCCc-CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 111111222 2245667775431112221111 10 112222
Q ss_pred EEEEEcCChhHHHhc--CCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHhhhhhc
Q 042374 192 RIIITTRDKQVLDKC--GVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVLGSSLY 266 (714)
Q Consensus 192 ~IliTtR~~~v~~~~--~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~ 266 (714)
-|=.|||...+.... +...+.+++-.+.+|-.++..+.+.--.-. -..+.+.+|+++..|-|--++-+-+.++
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~--i~~~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIE--IDEEAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCC--CChHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 345788866443322 223467888899999999998877321111 1125788999999999987666655554
No 136
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=0.00017 Score=79.21 Aligned_cols=193 Identities=13% Similarity=0.071 Sum_probs=107.8
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcc-cceEEeeechhcccccChHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHF-QGKCFMANVREESNKMGAIHVRDEV 133 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (714)
....++|.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+-... .....-. +. .-...+.+
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~----Cg----~C~~C~~i 84 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEP----CG----KCELCRAI 84 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCC----Cc----ccHHHHHH
Confidence 34568999999999998886432 235678999999999999999998753211 0000000 00 01111111
Q ss_pred HHHHh----CCCCCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEE-EcCChhH
Q 042374 134 ISQVL----GDKNLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIII-TTRDKQV 202 (714)
Q Consensus 134 ~~~~~----~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~Ili-TtR~~~v 202 (714)
..... ..........+..+.+.+.. .+++-++|+|+++.. ....+.|+..+......+.+|+ |+....+
T Consensus 85 ~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~l 164 (620)
T PRK14948 85 AAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRV 164 (620)
T ss_pred hcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhh
Confidence 11100 00000111122222222222 245568899999865 3456777766654334454454 4443333
Q ss_pred HHh-cCCCeEEecCCCCHHHHHHHHHHhhhhcC-CCChhHHHHHHHHHHHhcCCChhhH
Q 042374 203 LDK-CGVNYVYEVEGLEHNKAFELFYRKAFRQN-NYPPDFLGLSLEVVHYARNNPLALE 259 (714)
Q Consensus 203 ~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Plai~ 259 (714)
... ......+++..++.++....+.+.+.... ...+ +.+..|++.++|.+..+.
T Consensus 165 lpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~---~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 165 LPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEP---EALTLVAQRSQGGLRDAE 220 (620)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence 322 23346788999999998888877654322 1121 457788888888875443
No 137
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.08 E-value=2.7e-05 Score=82.48 Aligned_cols=159 Identities=21% Similarity=0.348 Sum_probs=89.3
Q ss_pred CCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcc-----cceEEeeechhc
Q 042374 57 DGFVGLNSRIEEVKSLLCL-----------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHF-----QGKCFMANVREE 120 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f-----~~~~~~~~~~~~ 120 (714)
..+.|.+.+++++.+.+.. +-...+-+.++|++|+|||++|+.+++.+..++ ....|+. +
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~----v 257 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN----I 257 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe----c
Confidence 5578899999988877532 112355689999999999999999999875542 1233332 1
Q ss_pred ccccChHHHHHHHHHHHhCCCCCcccchhhH-HHHHHH-hcCCcEEEEEeCCCCCH-------------HHHHHHhcCCC
Q 042374 121 SNKMGAIHVRDEVISQVLGDKNLKIGTLVIH-QNIRKR-LRQVKMLIVLDAVHDGF-------------TQLESLAGELD 185 (714)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~-l~~k~~LlVlDdv~~~~-------------~~~~~l~~~l~ 185 (714)
... +++....+.. ....... +..++. -.+++++++||+++... ..+..+...+.
T Consensus 258 ~~~--------eLl~kyvGet---e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 258 KGP--------ELLNKYVGET---ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred cch--------hhcccccchH---HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 100 0111101100 0000111 122221 23578999999996420 01233444333
Q ss_pred CCC--CCcEEEEEcCChhHHH-h----cCCCeEEecCCCCHHHHHHHHHHhh
Q 042374 186 KFT--TGSRIIITTRDKQVLD-K----CGVNYVYEVEGLEHNKAFELFYRKA 230 (714)
Q Consensus 186 ~~~--~gs~IliTtR~~~v~~-~----~~~~~~~~l~~L~~~~~~~l~~~~~ 230 (714)
... .+..||.||...+... . .+....++++..+.++..++|..+.
T Consensus 327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 222 2444555665443211 1 2345679999999999999998885
No 138
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.08 E-value=5.6e-05 Score=86.74 Aligned_cols=66 Identities=24% Similarity=0.341 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhccCCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 39 KVQKWRDALTEASNSTDLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
.+.++...+.+.+..-.-+.+|||+.++.++++.|.... ...+.++|++|+|||++|+.++.++..
T Consensus 160 ~l~~~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 160 ALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred HHHHHhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 455666666666655566789999999999999986543 234569999999999999999997643
No 139
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.9e-07 Score=87.69 Aligned_cols=171 Identities=25% Similarity=0.226 Sum_probs=120.3
Q ss_pred cccceEecccccce--EeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCC--Cchhhhccccccc
Q 042374 518 GSVTKLILWETAIK--EVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLEN--FPEILEKMEYLNY 593 (714)
Q Consensus 518 ~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~ 593 (714)
..+++|+|+++.|+ .+...+..+.+|+.|.|.++.+...+...+.+-.+|+.|+++.|+-... +...+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 35778888888776 3333467788999999999988888877888889999999999876543 2345788999999
Q ss_pred cccCCccccccCccccCCCCCcccCCCccC-CCCCCCceeccCCCcCc--------CCCCCCCCEEECCCCC-Cc-ccch
Q 042374 594 NALGRTKIRELPSTFEKGEGTESQLPSSVA-DTNDLEGLSLYLRNYAL--------NGCLSSLEYLDLSGND-FE-SLPA 662 (714)
Q Consensus 594 L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~~~--------~~~l~~L~~L~L~~n~-l~-~lp~ 662 (714)
|+++++.+..--... .+. --++|..|+|+++.-.. ...+|+|..|||+.|. ++ .+-.
T Consensus 265 LNlsWc~l~~~~Vtv------------~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~ 332 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTV------------AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 332 (419)
T ss_pred cCchHhhccchhhhH------------HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH
Confidence 999997654211110 011 12567777887774221 3457889999998874 44 4444
Q ss_pred hhccCCCCCeeccccCccccccCC------CcCcccEeecccCccc
Q 042374 663 SIKQLSRLRKLHLCYCDKLQSIPE------LPLSLKWLDASNCERL 702 (714)
Q Consensus 663 ~l~~l~~L~~L~l~~~~~~~~lp~------~~~~L~~L~l~~c~~l 702 (714)
.+..++.|++|.++.|-.+ +|+ ..|+|.+|++.+|-+=
T Consensus 333 ~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 333 EFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred HHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccCc
Confidence 5678889999999888632 232 3578899999888543
No 140
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.06 E-value=9.3e-05 Score=73.58 Aligned_cols=153 Identities=12% Similarity=0.145 Sum_probs=84.8
Q ss_pred CcccchhhHHHHHhhhcc----------c---CCCeEEEEEEccCchhHHHHHHHHHHHHhhcc--cceEEeeechhccc
Q 042374 58 GFVGLNSRIEEVKSLLCL----------E---SRDVRIVGIWGMGGIGKTTIASAVFHQISRHF--QGKCFMANVREESN 122 (714)
Q Consensus 58 ~~vGr~~~~~~l~~~l~~----------~---~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~ 122 (714)
.++|.++.++++.++... + .....-+.++|++|+|||++|+.++..+...- ....|+. ++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~----v~~ 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS----VTR 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE----ecH
Confidence 368877777666553211 0 01223578999999999999999988654321 1112332 111
Q ss_pred ccChHHHHHHHHHHHhCCCCCcccchhhH-HHHHHHhcCCcEEEEEeCCCCC----------HHHHHHHhcCCCCCCCCc
Q 042374 123 KMGAIHVRDEVISQVLGDKNLKIGTLVIH-QNIRKRLRQVKMLIVLDAVHDG----------FTQLESLAGELDKFTTGS 191 (714)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~----------~~~~~~l~~~l~~~~~gs 191 (714)
.+++....|... ... +.+.+. ..-+|++|++... .+.++.+...+.....+.
T Consensus 99 --------~~l~~~~~g~~~------~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~ 161 (284)
T TIGR02880 99 --------DDLVGQYIGHTA------PKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDL 161 (284)
T ss_pred --------HHHhHhhcccch------HHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCE
Confidence 122222233221 111 222221 2358899999621 123455555554444455
Q ss_pred EEEEEcCChhHHHhc--------CCCeEEecCCCCHHHHHHHHHHhhh
Q 042374 192 RIIITTRDKQVLDKC--------GVNYVYEVEGLEHNKAFELFYRKAF 231 (714)
Q Consensus 192 ~IliTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~~l~~~~~~ 231 (714)
+||+++......... .....+++++++.+|..+++...+-
T Consensus 162 ~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 162 VVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred EEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 677766544322211 2245799999999999999987753
No 141
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=7.5e-05 Score=72.87 Aligned_cols=174 Identities=18% Similarity=0.250 Sum_probs=103.7
Q ss_pred CCCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhccccc
Q 042374 56 LDGFVGLNSRIEEVKSLLCL-----------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKM 124 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 124 (714)
...+=|-++++++|.+.+.. +-..++-|.+||++|.|||-||++|+++....| +..+
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----Irvv------- 217 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVV------- 217 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEec-------
Confidence 34466788899998887753 114577889999999999999999999765544 3211
Q ss_pred ChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHh-cCCcEEEEEeCCCCC------------HH---HHHHHhcCCCCCC
Q 042374 125 GAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRL-RQVKMLIVLDAVHDG------------FT---QLESLAGELDKFT 188 (714)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~------------~~---~~~~l~~~l~~~~ 188 (714)
..++.+..+|... ..++.+.+.- ...+..|.+|+++.. .+ .+-.|+..+..+.
T Consensus 218 -----gSElVqKYiGEGa------RlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD 286 (406)
T COG1222 218 -----GSELVQKYIGEGA------RLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD 286 (406)
T ss_pred -----cHHHHHHHhccch------HHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC
Confidence 1122233334321 1113333332 356799999998532 11 1234555555555
Q ss_pred C--CcEEEEEcCChh-----HHHhcCCCeEEecCCCCHHHHHHHHHHhhhhcC-CCChhHHHHHHHHHHHhcCCCh
Q 042374 189 T--GSRIIITTRDKQ-----VLDKCGVNYVYEVEGLEHNKAFELFYRKAFRQN-NYPPDFLGLSLEVVHYARNNPL 256 (714)
Q Consensus 189 ~--gs~IliTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pl 256 (714)
+ ..+||..|.-.+ +.+.-+.+..++++.-+.+...++|.-|+..-. ...-+ .+.+++.+.|.-=
T Consensus 287 ~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sG 358 (406)
T COG1222 287 PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSG 358 (406)
T ss_pred CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCch
Confidence 4 457887665333 333335567899997777778888887763222 12222 3456666666653
No 142
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=0.00029 Score=76.59 Aligned_cols=192 Identities=11% Similarity=0.052 Sum_probs=109.3
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
...++||-+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+-..-... ... +..+..- +++.
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~-~~p----C~~C~~C----~~i~ 83 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPT-PMP----CGECSSC----KSID 83 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCC-CCC----CccchHH----HHHH
Confidence 34568999999999999886432 346788999999999999999998653210000 000 0000000 0110
Q ss_pred HHH-hC---CCCCcccchhhHHHHHHH-----hcCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCC-hhHH
Q 042374 135 SQV-LG---DKNLKIGTLVIHQNIRKR-----LRQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRD-KQVL 203 (714)
Q Consensus 135 ~~~-~~---~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~-~~v~ 203 (714)
... .+ -+.......+..+.+.+. ..+++-++|+|+++.. ...++.|...+......+.+|++|.. ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 000 00 000000112222222211 2356668999999765 34577777777654556666655543 3333
Q ss_pred Hh-cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhh
Q 042374 204 DK-CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLAL 258 (714)
Q Consensus 204 ~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 258 (714)
.. ......+++.+++.++..+.+.+.+......-. .+.+..|++.++|.+-.+
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id--~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE--DEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 22 233457899999999999988877644332211 256677888888877543
No 143
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.05 E-value=7.8e-05 Score=78.71 Aligned_cols=152 Identities=14% Similarity=0.138 Sum_probs=85.2
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHhc
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRLR 159 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 159 (714)
...+.|+|+.|+|||+|++.+++.+......++++. ......++...+ ... ..+.+++...
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~----------~~~f~~~~~~~l-~~~--------~~~~f~~~~~ 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR----------SELFTEHLVSAI-RSG--------EMQRFRQFYR 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee----------HHHHHHHHHHHH-hcc--------hHHHHHHHcc
Confidence 356889999999999999999998765544455554 112222333332 111 0123333333
Q ss_pred CCcEEEEEeCCCCC--HHH-HHHHhcCCCC-CCCCcEEEEEcCC-hh--------HHHhcCCCeEEecCCCCHHHHHHHH
Q 042374 160 QVKMLIVLDAVHDG--FTQ-LESLAGELDK-FTTGSRIIITTRD-KQ--------VLDKCGVNYVYEVEGLEHNKAFELF 226 (714)
Q Consensus 160 ~k~~LlVlDdv~~~--~~~-~~~l~~~l~~-~~~gs~IliTtR~-~~--------v~~~~~~~~~~~l~~L~~~~~~~l~ 226 (714)
..-++++||+... ... .+.+...+.. ...|..||+||.. +. +...+.....+.+.+++.++..+++
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 3458888998543 111 1222222111 1234568888753 22 1122233468899999999999999
Q ss_pred HHhhhhcCC-CChhHHHHHHHHHHHhcCC
Q 042374 227 YRKAFRQNN-YPPDFLGLSLEVVHYARNN 254 (714)
Q Consensus 227 ~~~~~~~~~-~~~~~~~~~~~i~~~~~g~ 254 (714)
.+++..... .++ ++...|++...+.
T Consensus 281 ~~k~~~~~~~l~~---evl~~la~~~~~d 306 (445)
T PRK12422 281 ERKAEALSIRIEE---TALDFLIEALSSN 306 (445)
T ss_pred HHHHHHcCCCCCH---HHHHHHHHhcCCC
Confidence 888754321 222 4555566665544
No 144
>CHL00181 cbbX CbbX; Provisional
Probab=98.05 E-value=0.0004 Score=68.98 Aligned_cols=154 Identities=12% Similarity=0.145 Sum_probs=84.9
Q ss_pred CcccchhhHHHHHhhhc---c---------c-CCCeEEEEEEccCchhHHHHHHHHHHHHhhc-c-cceEEeeechhccc
Q 042374 58 GFVGLNSRIEEVKSLLC---L---------E-SRDVRIVGIWGMGGIGKTTIASAVFHQISRH-F-QGKCFMANVREESN 122 (714)
Q Consensus 58 ~~vGr~~~~~~l~~~l~---~---------~-~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~-f-~~~~~~~~~~~~~~ 122 (714)
.++|.+..++++.++.. . . ......+.++|++|+|||++|+.+++..... + ....|+. ++
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~----v~- 98 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT----VT- 98 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE----ec-
Confidence 36777766665544321 0 0 1123457899999999999999999865321 1 1112332 11
Q ss_pred ccChHHHHHHHHHHHhCCCCCcccchhhH-HHHHHHhcCCcEEEEEeCCCCC----------HHHHHHHhcCCCCCCCCc
Q 042374 123 KMGAIHVRDEVISQVLGDKNLKIGTLVIH-QNIRKRLRQVKMLIVLDAVHDG----------FTQLESLAGELDKFTTGS 191 (714)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~----------~~~~~~l~~~l~~~~~gs 191 (714)
.. .+.....|... ... +.+.+. ..-+|++|+++.. .+..+.+...+.....+.
T Consensus 99 ---~~----~l~~~~~g~~~------~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~ 162 (287)
T CHL00181 99 ---RD----DLVGQYIGHTA------PKTKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDL 162 (287)
T ss_pred ---HH----HHHHHHhccch------HHHHHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCE
Confidence 11 12222233221 011 222221 2348999999641 233445555554444556
Q ss_pred EEEEEcCChhHHHh--------cCCCeEEecCCCCHHHHHHHHHHhhhh
Q 042374 192 RIIITTRDKQVLDK--------CGVNYVYEVEGLEHNKAFELFYRKAFR 232 (714)
Q Consensus 192 ~IliTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~l~~~~~~~ 232 (714)
.||+++....+... -.....+.+++++.+|..+++...+-.
T Consensus 163 ~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 163 VVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred EEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 67777654433211 134567999999999999999887643
No 145
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00018 Score=79.19 Aligned_cols=195 Identities=11% Similarity=0.069 Sum_probs=105.7
Q ss_pred CCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHH
Q 042374 56 LDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVIS 135 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (714)
.+.+||.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+.-.....-. ..+..+..-..+-...-.
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~----~~Cg~C~sC~~~~~~~~~ 90 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADG----EACNECESCVAFNEQRSY 90 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCC----CCCCcchHHHHHhcCCCC
Confidence 3568999999999999885432 24668899999999999999999865311000000 000000000000000000
Q ss_pred HHhCCCCCcccchhhHHHHHHH-----hcCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEE-EcCChhHHHh-cC
Q 042374 136 QVLGDKNLKIGTLVIHQNIRKR-----LRQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIII-TTRDKQVLDK-CG 207 (714)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~Ili-TtR~~~v~~~-~~ 207 (714)
.+..-+.......+..+.+.+. ..+++=++|+|+++.. ....+.|...+......+.+|+ |++...+... ..
T Consensus 91 n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~S 170 (614)
T PRK14971 91 NIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILS 170 (614)
T ss_pred ceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHh
Confidence 0000000000011122112111 1244558899999765 3456777776665445565554 4444444432 23
Q ss_pred CCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChh
Q 042374 208 VNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLA 257 (714)
Q Consensus 208 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 257 (714)
....+++.+++.++....+.+.+....-.-+ .+.+..|++.++|..--
T Consensus 171 Rc~iv~f~~ls~~ei~~~L~~ia~~egi~i~--~~al~~La~~s~gdlr~ 218 (614)
T PRK14971 171 RCQIFDFNRIQVADIVNHLQYVASKEGITAE--PEALNVIAQKADGGMRD 218 (614)
T ss_pred hhheeecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHH
Confidence 3467999999999999988876643322111 14567888888886643
No 146
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.04 E-value=0.00013 Score=78.48 Aligned_cols=154 Identities=15% Similarity=0.246 Sum_probs=88.7
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhhcc--cceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHh
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISRHF--QGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRL 158 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 158 (714)
..+.|+|..|+|||.|++.+++.+...+ ..++|+. ..++..++...+... ..+.+++.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~~---------~~~~f~~~y 375 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRDG---------KGDSFRRRY 375 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHhc---------cHHHHHHHh
Confidence 4589999999999999999999876533 2344554 122333333332111 012333444
Q ss_pred cCCcEEEEEeCCCCC--HHHH-HHHhcCCCC-CCCCcEEEEEcCCh---------hHHHhcCCCeEEecCCCCHHHHHHH
Q 042374 159 RQVKMLIVLDAVHDG--FTQL-ESLAGELDK-FTTGSRIIITTRDK---------QVLDKCGVNYVYEVEGLEHNKAFEL 225 (714)
Q Consensus 159 ~~k~~LlVlDdv~~~--~~~~-~~l~~~l~~-~~~gs~IliTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~l 225 (714)
.. .=+|||||++.. .+.+ +.+...+.. ...|..||+||+.. .+...+....+++++..+.+...++
T Consensus 376 ~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 376 RE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred hc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 33 347889999643 1222 222222211 12355688888753 1222334456789999999999999
Q ss_pred HHHhhhhcCCCChhHHHHHHHHHHHhcCCCh
Q 042374 226 FYRKAFRQNNYPPDFLGLSLEVVHYARNNPL 256 (714)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 256 (714)
+.+++......-+ .+++.-|++.+.+..-
T Consensus 455 L~kka~~r~l~l~--~eVi~yLa~r~~rnvR 483 (617)
T PRK14086 455 LRKKAVQEQLNAP--PEVLEFIASRISRNIR 483 (617)
T ss_pred HHHHHHhcCCCCC--HHHHHHHHHhccCCHH
Confidence 9988754332111 2566666666665543
No 147
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.04 E-value=4.7e-05 Score=85.25 Aligned_cols=171 Identities=15% Similarity=0.216 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHhccCCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhc------ccceE
Q 042374 39 KVQKWRDALTEASNSTDLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRH------FQGKC 112 (714)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~------f~~~~ 112 (714)
.+.+|...+.+.|.--..+.++||++++.++.+.|.... ..-+.++|++|+|||++|+.++.++... .+..+
T Consensus 168 ~l~~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~ 245 (758)
T PRK11034 168 RMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTI 245 (758)
T ss_pred HHHHHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeE
Confidence 455666666665554456789999999999999886542 2345689999999999999999865332 12333
Q ss_pred EeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHh-cCCcEEEEEeCCCCC---------HHHHHHHhc
Q 042374 113 FMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRL-RQVKMLIVLDAVHDG---------FTQLESLAG 182 (714)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~---------~~~~~~l~~ 182 (714)
|.. +.. .++ .|.... ....+..+.+.+.+ +..+.+|++|+++.. ......+..
T Consensus 246 ~~l---------~~~----~ll---aG~~~~-Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLk 308 (758)
T PRK11034 246 YSL---------DIG----SLL---AGTKYR-GDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIK 308 (758)
T ss_pred Eec---------cHH----HHh---cccchh-hhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHH
Confidence 321 111 111 111110 01111113333333 356789999998531 112222232
Q ss_pred CCCCCCCC-cEEEEEcCChhHHHh-------cCCCeEEecCCCCHHHHHHHHHHhh
Q 042374 183 ELDKFTTG-SRIIITTRDKQVLDK-------CGVNYVYEVEGLEHNKAFELFYRKA 230 (714)
Q Consensus 183 ~l~~~~~g-s~IliTtR~~~v~~~-------~~~~~~~~l~~L~~~~~~~l~~~~~ 230 (714)
++. ..| -+||-+|..++.... .+.-+.+.++..+.+++.+++....
T Consensus 309 p~L--~~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 309 PLL--SSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHH--hCCCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 222 233 344444443332111 1222579999999999999998654
No 148
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.04 E-value=6.2e-05 Score=86.77 Aligned_cols=170 Identities=15% Similarity=0.152 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHhccCCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcc------cceE
Q 042374 39 KVQKWRDALTEASNSTDLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHF------QGKC 112 (714)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f------~~~~ 112 (714)
.+.+|...+.+.+....-+.+|||+.++.++.+.|.... ...+.++|++|+|||++|+.++.++...+ ...+
T Consensus 155 ~l~~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~ 232 (852)
T TIGR03346 155 ALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRL 232 (852)
T ss_pred HHHHHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeE
Confidence 455666666665555456789999999999999986543 23456899999999999999999765421 2233
Q ss_pred EeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHh--cCCcEEEEEeCCCCC---------HHHHHHHh
Q 042374 113 FMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRL--RQVKMLIVLDAVHDG---------FTQLESLA 181 (714)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~---------~~~~~~l~ 181 (714)
|.... ..+. . +... ..........+.+.+ .+++.+|++|++... .+..+.+.
T Consensus 233 ~~l~~---------~~l~----a---~~~~-~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk 295 (852)
T TIGR03346 233 LALDM---------GALI----A---GAKY-RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLK 295 (852)
T ss_pred EEeeH---------HHHh----h---cchh-hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhc
Confidence 33211 1110 0 1000 001111223333333 246899999998633 11222332
Q ss_pred cCCCCCCCCc-EEEEEcCChhHHH-------hcCCCeEEecCCCCHHHHHHHHHHhh
Q 042374 182 GELDKFTTGS-RIIITTRDKQVLD-------KCGVNYVYEVEGLEHNKAFELFYRKA 230 (714)
Q Consensus 182 ~~l~~~~~gs-~IliTtR~~~v~~-------~~~~~~~~~l~~L~~~~~~~l~~~~~ 230 (714)
..+ ..|. .+|-+|...+... ....-+.+.++..+.++..+++....
T Consensus 296 ~~l---~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 296 PAL---ARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred hhh---hcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 222 2332 4444444343211 11223467899999999999887653
No 149
>PF14516 AAA_35: AAA-like domain
Probab=98.04 E-value=0.00032 Score=71.54 Aligned_cols=205 Identities=10% Similarity=0.098 Sum_probs=116.0
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcc-cccChHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREES-NKMGAIHVRDEV 133 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~ 133 (714)
+.+..|+|...-+++.+.+.. ....+.|.|+-.+|||+|...+.+..+..=...+++......+ ...+.....+.+
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCCcccCchHHHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHH
Confidence 556678999666666655532 2458899999999999999999988765433445555322111 123344444444
Q ss_pred HHHH---hCCCCC-------cccchhhH-HHHHHHh---cCCcEEEEEeCCCCCH-------HHHHHHhcCCCCCC--C-
Q 042374 134 ISQV---LGDKNL-------KIGTLVIH-QNIRKRL---RQVKMLIVLDAVHDGF-------TQLESLAGELDKFT--T- 189 (714)
Q Consensus 134 ~~~~---~~~~~~-------~~~~~~~~-~~l~~~l---~~k~~LlVlDdv~~~~-------~~~~~l~~~l~~~~--~- 189 (714)
...+ ++.... ..+..... ..+.+.+ .+++.+|++|+++... +-+..++....... +
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~ 165 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPI 165 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcc
Confidence 4333 222110 01111111 3344432 2689999999997541 11222221111111 0
Q ss_pred -CcEEEEEcCChh--HHH-h----cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHh
Q 042374 190 -GSRIIITTRDKQ--VLD-K----CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVL 261 (714)
Q Consensus 190 -gs~IliTtR~~~--v~~-~----~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 261 (714)
..-.++.....+ ... . ......++|++++.+|...|+.++... ... ...+++...++|+|..+..+
T Consensus 166 ~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~---~~~---~~~~~l~~~tgGhP~Lv~~~ 239 (331)
T PF14516_consen 166 WQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE---FSQ---EQLEQLMDWTGGHPYLVQKA 239 (331)
T ss_pred cceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc---CCH---HHHHHHHHHHCCCHHHHHHH
Confidence 111222222111 111 0 123457899999999999999877321 111 23889999999999999999
Q ss_pred hhhhccC
Q 042374 262 GSSLYQK 268 (714)
Q Consensus 262 ~~~l~~~ 268 (714)
+..+...
T Consensus 240 ~~~l~~~ 246 (331)
T PF14516_consen 240 CYLLVEE 246 (331)
T ss_pred HHHHHHc
Confidence 9988653
No 150
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.03 E-value=4.7e-05 Score=78.96 Aligned_cols=175 Identities=21% Similarity=0.233 Sum_probs=98.6
Q ss_pred CCCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhccccc
Q 042374 56 LDGFVGLNSRIEEVKSLLCL-----------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKM 124 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 124 (714)
...+.|.+..++++.+.+.. +-...+.|.++|++|+|||++|+.+++.....|- .+..
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i~~-------- 212 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RVVG-------- 212 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEeh--------
Confidence 34578999988888776631 1124567899999999999999999987654331 1110
Q ss_pred ChHHHHHHHHHHHhCCCCCcccchhhH-HHHHHHhcCCcEEEEEeCCCCC---------------HHHHHHHhcCCCCC-
Q 042374 125 GAIHVRDEVISQVLGDKNLKIGTLVIH-QNIRKRLRQVKMLIVLDAVHDG---------------FTQLESLAGELDKF- 187 (714)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~---------------~~~~~~l~~~l~~~- 187 (714)
. .+.....|.. .... +.+.......+.+|++|+++.. ...+..+...+...
T Consensus 213 --s----~l~~k~~ge~------~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 213 --S----EFVQKYLGEG------PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred --H----HHHHHhcchh------HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 0 1111111211 1111 2222233567899999997532 01122333333221
Q ss_pred -CCCcEEEEEcCChhHH-Hh----cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCCh
Q 042374 188 -TTGSRIIITTRDKQVL-DK----CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPL 256 (714)
Q Consensus 188 -~~gs~IliTtR~~~v~-~~----~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 256 (714)
..+..||+||...+.. .. ......++++..+.++..++|..+..... ..++ ....++++.+.|.--
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~-l~~d--vd~~~la~~t~g~sg 352 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN-LSEE--VDLEDFVSRPEKISA 352 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC-CCcc--cCHHHHHHHcCCCCH
Confidence 2355677777654322 11 13456789999999999999987653221 1111 123456666766653
No 151
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00013 Score=79.95 Aligned_cols=189 Identities=12% Similarity=0.039 Sum_probs=104.0
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
..+.+||.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+...-.. -.-. +..+ ..-.++.
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~-~~~~----c~~c----~~c~~i~ 83 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGL-TAEP----CNVC----PPCVEIT 83 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCC-CCCC----CCcc----HHHHHHh
Confidence 44568999999999998885432 24667899999999999999999865321000 0000 0000 0000000
Q ss_pred HHH----hCCCCCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEE-EcCChhHH
Q 042374 135 SQV----LGDKNLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIII-TTRDKQVL 203 (714)
Q Consensus 135 ~~~----~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~Ili-TtR~~~v~ 203 (714)
..- ..-+.......+..+.+.+.+ .+++-++|+|+++.. ....+.|...+......+.+|+ ||....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 000 000000001112222333322 244558899999765 3456667766654445555554 44444443
Q ss_pred Hh-cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCC
Q 042374 204 DK-CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNP 255 (714)
Q Consensus 204 ~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 255 (714)
.. ......+++.+++.++....+...+-.....-+ .+.+..+++.++|..
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~--~~al~~la~~a~G~l 214 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS--DAALALVARKGDGSM 214 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCCH
Confidence 32 223457889999999998888766533221111 145667788888865
No 152
>PRK06620 hypothetical protein; Validated
Probab=98.03 E-value=9.9e-05 Score=69.92 Aligned_cols=132 Identities=8% Similarity=0.027 Sum_probs=76.7
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHhcC
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRLRQ 160 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 160 (714)
+.+.|+|++|+|||+|++.+++.... .++. ..+.. + +..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~------~~~~~-------------------------~---~~~~- 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIK------DIFFN-------------------------E---EILE- 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcc------hhhhc-------------------------h---hHHh-
Confidence 56899999999999999987765421 2221 00000 0 0011
Q ss_pred CcEEEEEeCCCCCH-HHHHHHhcCCCCCCCCcEEEEEcCChh-------HHHhcCCCeEEecCCCCHHHHHHHHHHhhhh
Q 042374 161 VKMLIVLDAVHDGF-TQLESLAGELDKFTTGSRIIITTRDKQ-------VLDKCGVNYVYEVEGLEHNKAFELFYRKAFR 232 (714)
Q Consensus 161 k~~LlVlDdv~~~~-~~~~~l~~~l~~~~~gs~IliTtR~~~-------v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~ 232 (714)
..-++++||++... ..+-.+...+. ..|..||+|++... ....+....++++++++.++..+++.+.+..
T Consensus 85 ~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 85 KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 22468889997531 12222222222 34668999987442 1222334458999999999988888877643
Q ss_pred cC-CCChhHHHHHHHHHHHhcCCChh
Q 042374 233 QN-NYPPDFLGLSLEVVHYARNNPLA 257 (714)
Q Consensus 233 ~~-~~~~~~~~~~~~i~~~~~g~Pla 257 (714)
.. ..+ +++...|++.+.|.--.
T Consensus 163 ~~l~l~---~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 163 SSVTIS---RQIIDFLLVNLPREYSK 185 (214)
T ss_pred cCCCCC---HHHHHHHHHHccCCHHH
Confidence 21 122 25666777776665433
No 153
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=0.0002 Score=72.38 Aligned_cols=167 Identities=10% Similarity=0.050 Sum_probs=92.3
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHH------h-CCCCCcccchhhHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQV------L-GDKNLKIGTLVIHQ 152 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~ 152 (714)
.+.+.++|+.|+|||++|+.+++.+--.-.... ..+..+. .-+.+...- + .......-..+.++
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~-----~~Cg~C~----sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR 92 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGG-----GACGSCK----GCQLLRAGSHPDNFVLEPEEADKTIKVDQVR 92 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCC-----CCCCCCH----HHHHHhcCCCCCEEEEeccCCCCCCCHHHHH
Confidence 567889999999999999999986532110000 0000000 000000000 0 00000001122233
Q ss_pred HHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCChh-HHHh-cCCCeEEecCCCCHHHHHH
Q 042374 153 NIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDKQ-VLDK-CGVNYVYEVEGLEHNKAFE 224 (714)
Q Consensus 153 ~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~ 224 (714)
.+.+.+ .+++-++|+|+++.. ....+.+...+.....++.+|+||.+.. +..- ....+.+.+.+++.+++.+
T Consensus 93 ~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~ 172 (328)
T PRK05707 93 ELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQ 172 (328)
T ss_pred HHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHH
Confidence 333332 233445577999865 4567777777665556777777777654 3222 2334679999999999999
Q ss_pred HHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHh
Q 042374 225 LFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVL 261 (714)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 261 (714)
.+.+.. .. .. .+.+..++..++|.|..+..+
T Consensus 173 ~L~~~~-~~-~~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 173 WLQQAL-PE-SD----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHhc-cc-CC----hHHHHHHHHHcCCCHHHHHHH
Confidence 887653 11 11 134567788999999765544
No 154
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=0.00028 Score=70.96 Aligned_cols=193 Identities=12% Similarity=0.080 Sum_probs=110.4
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhh---------------cccceEEeeechhcc
Q 042374 57 DGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISR---------------HFQGKCFMANVREES 121 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~---------------~f~~~~~~~~~~~~~ 121 (714)
..++|.+..++.+.+.+..+. -.+...++|+.|+||+++|..+++.+-. .++...|+.......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 458999999999999885432 2478899999999999999999986521 123334443110000
Q ss_pred cccChHHHHHHHHHHHhC--CCCCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEE
Q 042374 122 NKMGAIHVRDEVISQVLG--DKNLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRI 193 (714)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~I 193 (714)
.... -...+.. .| ......-..+..+.+.+.+ .+++-++|+|+++.. ....+.|+..+.... .+.+
T Consensus 83 -g~~~---~~~~~~~-~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 83 -GKLI---TASEAEE-AGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred -cccc---chhhhhh-ccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 0000 0000000 11 0000011122234444444 355678999998765 345666666665444 3445
Q ss_pred EEEc-CChhHHHh-cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHh
Q 042374 194 IITT-RDKQVLDK-CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVL 261 (714)
Q Consensus 194 liTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 261 (714)
|++| ....+... ......+++.+++.++..+.+.+...... .. .....++..++|.|..+..+
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-~~----~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-LN----INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-ch----hHHHHHHHHcCCCHHHHHHH
Confidence 5444 44433332 23457899999999999999987642111 11 11357888999999765443
No 155
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.01 E-value=1.7e-05 Score=80.21 Aligned_cols=94 Identities=14% Similarity=0.138 Sum_probs=61.9
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHHhh-cccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccc--hh---hH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQISR-HFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGT--LV---IH 151 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~ 151 (714)
+..+.++|+|++|.|||||++.+++.+.. +|+..+|+..+.+ +..++.++++++...+.......... .. ..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE--R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE--RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC--CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 34568999999999999999999997654 5998999884322 22578888888855443332221111 11 11
Q ss_pred -HHHHHH-hcCCcEEEEEeCCCCC
Q 042374 152 -QNIRKR-LRQVKMLIVLDAVHDG 173 (714)
Q Consensus 152 -~~l~~~-l~~k~~LlVlDdv~~~ 173 (714)
+..... -++++++|++|++...
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhHH
Confidence 112222 3689999999999653
No 156
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.00 E-value=0.00058 Score=64.23 Aligned_cols=53 Identities=21% Similarity=0.426 Sum_probs=39.7
Q ss_pred CCCCcccchhhHHHHHhhhcc--cCCCeEEEEEEccCchhHHHHHHHHHHHHhhc
Q 042374 55 DLDGFVGLNSRIEEVKSLLCL--ESRDVRIVGIWGMGGIGKTTIASAVFHQISRH 107 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~--~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~ 107 (714)
..+.++|.|.+++.|.+-... ......-+.+||..|.|||++++.+.++..+.
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 445689999998887664321 22345567899999999999999999876554
No 157
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=1.4e-07 Score=88.52 Aligned_cols=173 Identities=24% Similarity=0.242 Sum_probs=93.5
Q ss_pred CcccccCCCCCCccccCCc---ccccccEEeccCCccccccC-CCCCCCCCcEEecCCCCCCccCC--ccccCCCCCCEE
Q 042374 406 NLTELSLPYSKVEQSWGGK---RLLSSKFIDLSHSQYLIRMP-DLSEAPNLERINLLNCTNLVSVP--SSIQNFNHLSML 479 (714)
Q Consensus 406 ~L~~L~l~~~~i~~~~~~~---~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~lp--~~~~~l~~L~~L 479 (714)
.+++|++++..|+...... .|..|+-|.|.+++....+. .+.+-.+|+.|+|+.|+...... --+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4777777777665432221 27777777777776654443 45666777888887776554332 235677777778
Q ss_pred ecCCCCCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccc----eEeccccCCCCCCcEEecCCCCCCc
Q 042374 480 CFEGCKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAI----KEVPSSVGCLTNLKVLSLSQCPRLK 555 (714)
Q Consensus 480 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i----~~lp~~~~~l~~L~~L~l~~~~~~~ 555 (714)
+|++|.........+ +.+..++|+.|+++++.- ..+..-...+++|.+|||++|..+.
T Consensus 266 NlsWc~l~~~~Vtv~------------------V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVA------------------VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred CchHhhccchhhhHH------------------HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence 887775543321111 112233344444443211 1111123456667777777664332
Q ss_pred c-ccccccCCCCCCEEEecCCCCCCCCch---hhhccccccccccCC
Q 042374 556 R-ISTSILKLKSLQNLYLIQCFDLENFPE---ILEKMEYLNYNALGR 598 (714)
Q Consensus 556 ~-~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~L~~L~l~~ 598 (714)
. .-..+.+++.|++|+++.|... .|. .+...+.|.+|++.+
T Consensus 328 ~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 328 NDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred chHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecc
Confidence 1 2223456666777777666532 222 245566666666654
No 158
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.95 E-value=0.00036 Score=68.75 Aligned_cols=165 Identities=17% Similarity=0.164 Sum_probs=101.5
Q ss_pred CCCcccchhhHHHHHhhhcccCCC-eEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHH
Q 042374 56 LDGFVGLNSRIEEVKSLLCLESRD-VRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~~~~~-~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
.+.|-+|+.++..+..++...+.. +..|.|+|.+|.|||.+++.+.+.... ..+|+. +-..+...-..++|+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n----~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLN----CVECFTYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeee----hHHhccHHHHHHHHH
Confidence 467899999999999999765543 456689999999999999999986632 357887 566778888888888
Q ss_pred HHHh-CCCCCcccch--hhH----HHHHH--Hhc--CCcEEEEEeCCCCCHH----HHH---HHhcCCCCCCCCcEEEEE
Q 042374 135 SQVL-GDKNLKIGTL--VIH----QNIRK--RLR--QVKMLIVLDAVHDGFT----QLE---SLAGELDKFTTGSRIIIT 196 (714)
Q Consensus 135 ~~~~-~~~~~~~~~~--~~~----~~l~~--~l~--~k~~LlVlDdv~~~~~----~~~---~l~~~l~~~~~gs~IliT 196 (714)
.+.. ...++..... +.. ..+.+ ... ++.++||+|+++...+ .+. .+-..++ .+...|+..
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~--~~~i~iils 155 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN--EPTIVIILS 155 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC--CCceEEEEe
Confidence 8853 2222111111 111 22222 122 4689999999976411 112 2222221 223333332
Q ss_pred cC-ChhHHH-hcCCC--eEEecCCCCHHHHHHHHHHh
Q 042374 197 TR-DKQVLD-KCGVN--YVYEVEGLEHNKAFELFYRK 229 (714)
Q Consensus 197 tR-~~~v~~-~~~~~--~~~~l~~L~~~~~~~l~~~~ 229 (714)
.- .+..-. .++.. -++..+.-+.+|..+++.+.
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 22 222222 13333 46788999999999988654
No 159
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.94 E-value=3.4e-05 Score=80.51 Aligned_cols=152 Identities=22% Similarity=0.299 Sum_probs=88.3
Q ss_pred CCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccC
Q 042374 57 DGFVGLNSRIEEVKSLLCL-----------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMG 125 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 125 (714)
..+.|.+.+++++.+++.. +-...+.+.++|++|+|||++|+.++++....|- .+. .+
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~----~s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVV----GS---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEe----cc----
Confidence 4468899999888877642 1123557889999999999999999998765441 111 00
Q ss_pred hHHHHHHHHHHHhCCCCCcccchhhH-HHHHHHhcCCcEEEEEeCCCCC------------HH---HHHHHhcCCCCC--
Q 042374 126 AIHVRDEVISQVLGDKNLKIGTLVIH-QNIRKRLRQVKMLIVLDAVHDG------------FT---QLESLAGELDKF-- 187 (714)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~------------~~---~~~~l~~~l~~~-- 187 (714)
.+ .....|.. .... +.+.......+.+++||+++.. .. .+..+...+...
T Consensus 252 --eL----~~k~~Ge~------~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 252 --EL----IQKYLGDG------PKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred --hh----hhhhcchH------HHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 01 11111110 1111 2222223456788999987421 00 112232222211
Q ss_pred CCCcEEEEEcCChhHHHh-c----CCCeEEecCCCCHHHHHHHHHHhhh
Q 042374 188 TTGSRIIITTRDKQVLDK-C----GVNYVYEVEGLEHNKAFELFYRKAF 231 (714)
Q Consensus 188 ~~gs~IliTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~l~~~~~~ 231 (714)
..+..||+||...+.... . .....++++..+.++..++|..++.
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 235577777775543322 1 3356789999999999999988763
No 160
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.92 E-value=0.0003 Score=65.73 Aligned_cols=182 Identities=13% Similarity=0.174 Sum_probs=103.1
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccc-hhhH-HHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGT-LVIH-QNIR 155 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~l~ 155 (714)
.+.+++.++|.-|.|||.+++.+.....+.-.+++.+. ........+...++.++.......... .+.. +.+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----CcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 34568999999999999999955544433222233332 444556667777777754421111111 1112 3333
Q ss_pred HHh-cCCc-EEEEEeCCCCC-HHHHHHHhc--CC-CCCCCCcEEEEEcCCh--------hHHHhc-CCCeEEecCCCCHH
Q 042374 156 KRL-RQVK-MLIVLDAVHDG-FTQLESLAG--EL-DKFTTGSRIIITTRDK--------QVLDKC-GVNYVYEVEGLEHN 220 (714)
Q Consensus 156 ~~l-~~k~-~LlVlDdv~~~-~~~~~~l~~--~l-~~~~~gs~IliTtR~~--------~v~~~~-~~~~~~~l~~L~~~ 220 (714)
+.. ++++ ..+++|++.+. .+.++.++. .+ .+...--+|+..-..+ .....- ++.-.|+++|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 333 5777 99999998654 233333322 11 1111112344333222 111111 22233999999999
Q ss_pred HHHHHHHHhhhhcCCCChhH-HHHHHHHHHHhcCCChhhHHhhhh
Q 042374 221 KAFELFYRKAFRQNNYPPDF-LGLSLEVVHYARNNPLALEVLGSS 264 (714)
Q Consensus 221 ~~~~l~~~~~~~~~~~~~~~-~~~~~~i~~~~~g~Plai~~~~~~ 264 (714)
+...++..+..+...+.+-+ .+....|.....|.|.+++.++..
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 99999988865443333222 346778899999999999887643
No 161
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.92 E-value=3e-07 Score=90.62 Aligned_cols=264 Identities=18% Similarity=0.175 Sum_probs=141.8
Q ss_pred CcccccCCCCCCccccCC---c-ccccccEEeccCCccccccC--CC-CCCCCCcEEecCCCCCCccCC--ccccCCCCC
Q 042374 406 NLTELSLPYSKVEQSWGG---K-RLLSSKFIDLSHSQYLIRMP--DL-SEAPNLERINLLNCTNLVSVP--SSIQNFNHL 476 (714)
Q Consensus 406 ~L~~L~l~~~~i~~~~~~---~-~~~~L~~L~l~~~~~~~~~~--~~-~~l~~L~~L~L~~~~~~~~lp--~~~~~l~~L 476 (714)
.|+.|++.++.-...... . .++++++|.+.+|...+... .+ ..+++|++|++..|..++... .-...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 577788877654333221 2 29999999999998544332 22 457899999999987665432 234567899
Q ss_pred CEEecCCCCCCCcc---CCCCCCCCCcEEEeCCCcCCCcc-----cccccccceEeccccc-ceEec--cccCCCCCCcE
Q 042374 477 SMLCFEGCKSLRSF---PSNLHFVCPVTINCGGCVNLTEF-----PQISGSVTKLILWETA-IKEVP--SSVGCLTNLKV 545 (714)
Q Consensus 477 ~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~L~~L~l~~~~-i~~lp--~~~~~l~~L~~ 545 (714)
++|++++|..+..- +..-+...++.+...+|..++.- .....-+.++++..|. ++... ..-..+..||.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 99999999877651 11112445666666666544311 1111223344444442 11110 11234667777
Q ss_pred EecCCCCCCccccc--cccCCCCCCEEEecCCCCCCC--CchhhhccccccccccCCccccccCccccCCCCCcccCCCc
Q 042374 546 LSLSQCPRLKRIST--SILKLKSLQNLYLIQCFDLEN--FPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSS 621 (714)
Q Consensus 546 L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~ 621 (714)
|+.++|...+..+- -..+.++|+.|.+.+|..... +...-.+.+.|+.+++.......- +.+-+.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d-----------~tL~sl 367 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD-----------GTLASL 367 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh-----------hhHhhh
Confidence 77777765433221 123567777777777764321 111123455666666655332110 111222
Q ss_pred cCCCCCCCceeccCCCcCc-C---------CCCCCCCEEECCCCCCc--ccchhhccCCCCCeeccccCcc
Q 042374 622 VADTNDLEGLSLYLRNYAL-N---------GCLSSLEYLDLSGNDFE--SLPASIKQLSRLRKLHLCYCDK 680 (714)
Q Consensus 622 ~~~~~~L~~L~l~~~~~~~-~---------~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~l~~~~~ 680 (714)
-.+++.|+.|.+++|.... . ..+..|+.|.|++|... ..-..+..+++|+.+++.+|+.
T Consensus 368 s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 368 SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 4456667777666665322 1 12445666666666433 2223345566666666666653
No 162
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.91 E-value=4.2e-07 Score=89.58 Aligned_cols=266 Identities=18% Similarity=0.197 Sum_probs=158.2
Q ss_pred ccccEEeccCCccccccC--C-CCCCCCCcEEecCCCCCCccCC--ccccCCCCCCEEecCCCCCCCccCCC-C--CCCC
Q 042374 427 LSSKFIDLSHSQYLIRMP--D-LSEAPNLERINLLNCTNLVSVP--SSIQNFNHLSMLCFEGCKSLRSFPSN-L--HFVC 498 (714)
Q Consensus 427 ~~L~~L~l~~~~~~~~~~--~-~~~l~~L~~L~L~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~~~~-~--~~~~ 498 (714)
..|+.|.+.++.-....+ . ...++++++|.+.+|..+++-. ..-..++.|++|++..|..++...-. + ++.+
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 457788888887655544 2 4678999999999987554321 22346788999999988777654322 1 3778
Q ss_pred CcEEEeCCCcCCCc-----ccccccccceEecccccceEe---ccccCCCCCCcEEecCCCCCCcccc--ccccCCCCCC
Q 042374 499 PVTINCGGCVNLTE-----FPQISGSVTKLILWETAIKEV---PSSVGCLTNLKVLSLSQCPRLKRIS--TSILKLKSLQ 568 (714)
Q Consensus 499 L~~L~l~~~~~l~~-----~~~~~~~L~~L~l~~~~i~~l---p~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~ 568 (714)
|++|+++.|..+.. +......++.+.+.+|.=..+ -..-..+.-+..+++..|...+... ..-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 88888888876654 111112233333333211111 0111223335555555664433221 1234567888
Q ss_pred EEEecCCCCCCCCc-hh-hhccccccccccCCcc-ccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc-----
Q 042374 569 NLYLIQCFDLENFP-EI-LEKMEYLNYNALGRTK-IRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL----- 640 (714)
Q Consensus 569 ~L~l~~~~~~~~~~-~~-l~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~----- 640 (714)
.|..++|......+ .. -.+..+|+.|.++.+. ++...... .-.+++.|+.+++..+....
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~------------l~rn~~~Le~l~~e~~~~~~d~tL~ 365 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTM------------LGRNCPHLERLDLEECGLITDGTLA 365 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhh------------hhcCChhhhhhcccccceehhhhHh
Confidence 88888876643322 22 2346788888887753 33222211 13467888888888776533
Q ss_pred --CCCCCCCCEEECCCCC-Ccc-----cchhhccCCCCCeeccccCccccccC----CCcCcccEeecccCccccc
Q 042374 641 --NGCLSSLEYLDLSGND-FES-----LPASIKQLSRLRKLHLCYCDKLQSIP----ELPLSLKWLDASNCERLQT 704 (714)
Q Consensus 641 --~~~l~~L~~L~L~~n~-l~~-----lp~~l~~l~~L~~L~l~~~~~~~~lp----~~~~~L~~L~l~~c~~l~~ 704 (714)
..+++.|+.|.|++|. ++. +...-.+...|..+.+++|+.+.+-. ...++|+.+++.+|...++
T Consensus 366 sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 366 SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 3467888999888874 332 23334567788889999988653222 1346788888888877655
No 163
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.90 E-value=1.5e-06 Score=91.56 Aligned_cols=105 Identities=22% Similarity=0.186 Sum_probs=78.9
Q ss_pred CchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCcCCCC----CCCCEEECCCCC
Q 042374 581 FPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYALNGCL----SSLEYLDLSGND 656 (714)
Q Consensus 581 ~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l----~~L~~L~L~~n~ 656 (714)
+-..+.-++.|+.|+|++|++.+... +..++.|++|+|++|.+.....+ ++|+.|.|++|.
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~~---------------Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~ 243 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVDN---------------LRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNA 243 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhHH---------------HHhcccccccccccchhccccccchhhhhheeeeecccH
Confidence 33456667888999999998876652 77889999999999988763322 358999999998
Q ss_pred CcccchhhccCCCCCeeccccCccccc--cCC--CcCcccEeecccCcc
Q 042374 657 FESLPASIKQLSRLRKLHLCYCDKLQS--IPE--LPLSLKWLDASNCER 701 (714)
Q Consensus 657 l~~lp~~l~~l~~L~~L~l~~~~~~~~--lp~--~~~~L~~L~l~~c~~ 701 (714)
++++- .+.++.+|+-|++++|-+.+. +.. .+.+|..|++.|||.
T Consensus 244 l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 244 LTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 88886 478889999999998865432 111 246788889988874
No 164
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.89 E-value=3.5e-05 Score=67.36 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=21.2
Q ss_pred EEEEccCchhHHHHHHHHHHHHh
Q 042374 83 VGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 83 v~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
|.|+|++|+|||++|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999875
No 165
>CHL00176 ftsH cell division protein; Validated
Probab=97.89 E-value=0.0001 Score=80.98 Aligned_cols=174 Identities=17% Similarity=0.193 Sum_probs=98.2
Q ss_pred CCCcccchhhHHHHHhhhcc---c-------CCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccC
Q 042374 56 LDGFVGLNSRIEEVKSLLCL---E-------SRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMG 125 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~---~-------~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 125 (714)
...++|.++..+++.+++.. . ....+-|.++|++|+|||++|+.++.+.... |+. ++
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~----is---- 248 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFS----IS---- 248 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eee----cc----
Confidence 35588988877776665421 1 1224568999999999999999999865332 222 11
Q ss_pred hHHHHHHHHHHHhCCCCCcccchhhH-HHHHHHhcCCcEEEEEeCCCCC---------------HHHHHHHhcCCCCC--
Q 042374 126 AIHVRDEVISQVLGDKNLKIGTLVIH-QNIRKRLRQVKMLIVLDAVHDG---------------FTQLESLAGELDKF-- 187 (714)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~---------------~~~~~~l~~~l~~~-- 187 (714)
..+. .....+. ..... +.+.+.....+.+|++||++.. ...+..+...+...
T Consensus 249 ~s~f----~~~~~g~------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 249 GSEF----VEMFVGV------GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred HHHH----HHHhhhh------hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 0001 0111111 01112 3334444677899999999532 01233444333222
Q ss_pred CCCcEEEEEcCChhHHH-h----cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCC
Q 042374 188 TTGSRIIITTRDKQVLD-K----CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNP 255 (714)
Q Consensus 188 ~~gs~IliTtR~~~v~~-~----~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 255 (714)
..+..||.||...+... . .+....+.++..+.++..++++.++...... + ......+++.+.|.-
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~-~--d~~l~~lA~~t~G~s 388 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS-P--DVSLELIARRTPGFS 388 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc-h--hHHHHHHHhcCCCCC
Confidence 23555666666543322 1 1345678899999999999998886442211 1 234566777777743
No 166
>PLN03194 putative disease resistance protein; Provisional
Probab=97.85 E-value=2.6e-05 Score=69.36 Aligned_cols=44 Identities=30% Similarity=0.491 Sum_probs=35.8
Q ss_pred CCCEEEeEeeccCccccccc-cCchHHHHHHHHhhChhHHHHHHHHHHHhccCCC
Q 042374 2 NGQIVIPVFYHVDPSDVRKQ-SGSFGEAFVEYEKNFPHKVQKWRDALTEASNSTD 55 (714)
Q Consensus 2 ~~~~~~pv~~~v~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (714)
+++.|+||||+|+|++||+| .+. ...+++++|+.|+.++++...
T Consensus 108 ~~~~ViPIFY~VdPsdVr~q~~~~----------~~~e~v~~Wr~AL~~va~l~G 152 (187)
T PLN03194 108 SKKRVIPIFCDVKPSQLRVVDNGT----------CPDEEIRRFNWALEEAKYTVG 152 (187)
T ss_pred cCCEEEEEEecCCHHHhhccccCC----------CCHHHHHHHHHHHHHHhcccc
Confidence 45789999999999999997 333 123789999999999998763
No 167
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.82 E-value=1.7e-05 Score=53.19 Aligned_cols=41 Identities=34% Similarity=0.471 Sum_probs=33.6
Q ss_pred CCCCEEECCCCCCcccchhhccCCCCCeeccccCccccccCC
Q 042374 645 SSLEYLDLSGNDFESLPASIKQLSRLRKLHLCYCDKLQSIPE 686 (714)
Q Consensus 645 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~ 686 (714)
++|++|++++|+++++|..+.+|++|+.|++++|++. +++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~-~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS-DISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS-BEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC-CCcC
Confidence 5799999999999999988999999999999999754 4443
No 168
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.82 E-value=0.00065 Score=69.45 Aligned_cols=133 Identities=14% Similarity=0.170 Sum_probs=80.7
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRL 158 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 158 (714)
....+.|||..|.|||.|++++.+...........+. .+ ......+++..+.. ...+..++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y----~~----se~f~~~~v~a~~~---------~~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY----LT----SEDFTNDFVKALRD---------NEMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe----cc----HHHHHHHHHHHHHh---------hhHHHHHHhh
Confidence 4678999999999999999999998877766433333 11 11222222222111 0114455555
Q ss_pred cCCcEEEEEeCCCCC------HHHHHHHhcCCCCCCCCcEEEEEcCCh---------hHHHhcCCCeEEecCCCCHHHHH
Q 042374 159 RQVKMLIVLDAVHDG------FTQLESLAGELDKFTTGSRIIITTRDK---------QVLDKCGVNYVYEVEGLEHNKAF 223 (714)
Q Consensus 159 ~~k~~LlVlDdv~~~------~~~~~~l~~~l~~~~~gs~IliTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~ 223 (714)
.-=++++||++.. .+.+-.+...+. ..|-.||+|++.. ++.........+++.+.+.+...
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~--~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ 250 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALL--ENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRL 250 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHH--hcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHH
Confidence 3448889998542 122222333332 2344899998633 23333444578999999999999
Q ss_pred HHHHHhhhh
Q 042374 224 ELFYRKAFR 232 (714)
Q Consensus 224 ~l~~~~~~~ 232 (714)
+++.+++..
T Consensus 251 aiL~kka~~ 259 (408)
T COG0593 251 AILRKKAED 259 (408)
T ss_pred HHHHHHHHh
Confidence 999887643
No 169
>PRK08116 hypothetical protein; Validated
Probab=97.79 E-value=0.00013 Score=71.70 Aligned_cols=103 Identities=21% Similarity=0.270 Sum_probs=57.5
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHhcC
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRLRQ 160 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 160 (714)
..+.++|.+|+|||.||..+++.+..+...++++. ..+++..+.....+.. . .....+.+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~----------~~~ll~~i~~~~~~~~--~----~~~~~~~~~l~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN----------FPQLLNRIKSTYKSSG--K----EDENEIIRSLVN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhccc--c----ccHHHHHHHhcC
Confidence 45889999999999999999998876644555554 2223333333321111 0 011334455554
Q ss_pred CcEEEEEeCCCCC-HHHH--HHHhcCCCC-CCCCcEEEEEcCCh
Q 042374 161 VKMLIVLDAVHDG-FTQL--ESLAGELDK-FTTGSRIIITTRDK 200 (714)
Q Consensus 161 k~~LlVlDdv~~~-~~~~--~~l~~~l~~-~~~gs~IliTtR~~ 200 (714)
-. ||||||+... ...| ..+...+.. ...+..+|+||...
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 44 8999999422 0112 222222211 23455688888744
No 170
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.79 E-value=0.00014 Score=78.89 Aligned_cols=173 Identities=19% Similarity=0.171 Sum_probs=93.6
Q ss_pred CCcccchhhHHHHHhhhc---c-------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccCh
Q 042374 57 DGFVGLNSRIEEVKSLLC---L-------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGA 126 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~---~-------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 126 (714)
+.++|.+..++++.+++. . +....+-+.++|++|+|||++|+.++....-.| +. ++ .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~----i~----~ 121 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS----IS----G 121 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----ee----cc----H
Confidence 447788777666655443 1 112245688999999999999999998653322 11 11 0
Q ss_pred HHHHHHHHHHHhCCCCCcccchhhH-HHHHHHhcCCcEEEEEeCCCCC---------------HHHHHHHhcCCCCC--C
Q 042374 127 IHVRDEVISQVLGDKNLKIGTLVIH-QNIRKRLRQVKMLIVLDAVHDG---------------FTQLESLAGELDKF--T 188 (714)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~---------------~~~~~~l~~~l~~~--~ 188 (714)
.+. .....+.. .... +.+.......+.+|++||++.. ...+..+...+... .
T Consensus 122 ~~~----~~~~~g~~------~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 122 SDF----VEMFVGVG------ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred HHH----HHHHhccc------HHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 011 11111110 1111 2233333456789999999542 01122333333221 2
Q ss_pred CCcEEEEEcCChh-----HHHhcCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCC
Q 042374 189 TGSRIIITTRDKQ-----VLDKCGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNP 255 (714)
Q Consensus 189 ~gs~IliTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 255 (714)
.+..||.||.... +.+..+....+.++..+.++..+++..+....... .+ .....+++.+.|.-
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~--~~l~~la~~t~G~s 260 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PD--VDLKAVARRTPGFS 260 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cc--hhHHHHHHhCCCCC
Confidence 3445566665443 11112345678999999999999998876432221 11 22457777777754
No 171
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.78 E-value=0.00036 Score=72.82 Aligned_cols=118 Identities=17% Similarity=0.189 Sum_probs=76.2
Q ss_pred EEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHhcCC
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRLRQV 161 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k 161 (714)
++.|.|+-++||||+++.+.....+. .+++............ .+.. ..+.+.-..+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l----~d~~-----------------~~~~~~~~~~ 94 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIEL----LDLL-----------------RAYIELKERE 94 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhH----HHHH-----------------HHHHHhhccC
Confidence 99999999999999997777655444 5555411111111111 1111 1222222227
Q ss_pred cEEEEEeCCCCCHHHHHHHhcCCCCCCCCcEEEEEcCChhHHH-----h-cCCCeEEecCCCCHHHHHHH
Q 042374 162 KMLIVLDAVHDGFTQLESLAGELDKFTTGSRIIITTRDKQVLD-----K-CGVNYVYEVEGLEHNKAFEL 225 (714)
Q Consensus 162 ~~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~v~~-----~-~~~~~~~~l~~L~~~~~~~l 225 (714)
+..++||+|... ..|......+.+.++. +|++|+-+..... . .|....+++-|||..|...+
T Consensus 95 ~~yifLDEIq~v-~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 95 KSYIFLDEIQNV-PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred CceEEEecccCc-hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 789999999998 7788777777655655 8888887664322 1 24456799999999998664
No 172
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.74 E-value=0.00029 Score=74.93 Aligned_cols=176 Identities=13% Similarity=0.081 Sum_probs=93.3
Q ss_pred CCcccchhhHHHHHhhhc---c-----cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHH
Q 042374 57 DGFVGLNSRIEEVKSLLC---L-----ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIH 128 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~---~-----~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 128 (714)
..+.|.+..++.+.+... . +-...+-|.++|++|+|||.+|+.+++++.-.|- -+. . .
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~---~l~-~---------~- 293 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLL---RLD-V---------G- 293 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEE---EEE-h---------H-
Confidence 446777766665554221 1 1123567899999999999999999987654321 111 0 0
Q ss_pred HHHHHHHHHhCCCCCcccchhhH-HHHHHHhcCCcEEEEEeCCCCCH-------------HHHHHHhcCCCCCCCCcEEE
Q 042374 129 VRDEVISQVLGDKNLKIGTLVIH-QNIRKRLRQVKMLIVLDAVHDGF-------------TQLESLAGELDKFTTGSRII 194 (714)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~~l~~~l~~~~~gs~Il 194 (714)
++.....|.. .... +.+...-...+++|++|+++... ..+..+...+.....+.-||
T Consensus 294 ---~l~~~~vGes------e~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI 364 (489)
T CHL00195 294 ---KLFGGIVGES------ESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV 364 (489)
T ss_pred ---HhcccccChH------HHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE
Confidence 1111111111 1111 22222224578999999996420 01122222222223344466
Q ss_pred EEcCChh-----HHHhcCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCCh
Q 042374 195 ITTRDKQ-----VLDKCGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPL 256 (714)
Q Consensus 195 iTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 256 (714)
.||.... +.+..+.+..+.++.-+.++..++|..+......... .......+++.+.|.--
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~-~~~dl~~La~~T~GfSG 430 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSW-KKYDIKKLSKLSNKFSG 430 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcc-cccCHHHHHhhcCCCCH
Confidence 6776543 2222245677889989999999999888643221100 01124566666666553
No 173
>PRK08181 transposase; Validated
Probab=97.73 E-value=0.00018 Score=70.27 Aligned_cols=36 Identities=19% Similarity=0.128 Sum_probs=29.0
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
...+.++|++|+|||.||..+++.+..+...+.|+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 345899999999999999999998766555566664
No 174
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.72 E-value=0.001 Score=64.75 Aligned_cols=196 Identities=13% Similarity=0.063 Sum_probs=108.0
Q ss_pred CCCcccchhh---HHHHHhhhcc-cCCCeEEEEEEccCchhHHHHHHHHHHHHhhccc------ceEEeeechhcccccC
Q 042374 56 LDGFVGLNSR---IEEVKSLLCL-ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQ------GKCFMANVREESNKMG 125 (714)
Q Consensus 56 ~~~~vGr~~~---~~~l~~~l~~-~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~------~~~~~~~~~~~~~~~~ 125 (714)
.+.+||-... ++.|.+++.. .....+.+.|||.+|+|||+++++++......++ .++.+. .....+
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~ 108 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPD 108 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCC
Confidence 4567775543 4556666653 3345678999999999999999999985433332 233333 566788
Q ss_pred hHHHHHHHHHHHhCCCCCcccchhhH-HHHHHHhc-CCcEEEEEeCCCCC--------HHHHHHHhcCCCCCCCCcEEEE
Q 042374 126 AIHVRDEVISQVLGDKNLKIGTLVIH-QNIRKRLR-QVKMLIVLDAVHDG--------FTQLESLAGELDKFTTGSRIII 195 (714)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~-~k~~LlVlDdv~~~--------~~~~~~l~~~l~~~~~gs~Ili 195 (714)
...++..++.++ +............ ..+.+.++ -+.=+||+|++.+. ...++.+ ..+...-.-+-|.+
T Consensus 109 ~~~~Y~~IL~~l-gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~L-K~L~NeL~ipiV~v 186 (302)
T PF05621_consen 109 ERRFYSAILEAL-GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNAL-KFLGNELQIPIVGV 186 (302)
T ss_pred hHHHHHHHHHHh-CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHH-HHHhhccCCCeEEe
Confidence 889999999884 4433333333333 45555664 34458899999653 1112222 22221122334445
Q ss_pred EcCChhHHHhc-----CCCeEEecCCCCHHH-HHHHHHHhhhhc--CC-CChhHHHHHHHHHHHhcCCChh
Q 042374 196 TTRDKQVLDKC-----GVNYVYEVEGLEHNK-AFELFYRKAFRQ--NN-YPPDFLGLSLEVVHYARNNPLA 257 (714)
Q Consensus 196 TtR~~~v~~~~-----~~~~~~~l~~L~~~~-~~~l~~~~~~~~--~~-~~~~~~~~~~~i~~~~~g~Pla 257 (714)
-|++.--+-.. ..-..+.++....++ ...|+......- .. ..-...+++..|...++|+.=-
T Consensus 187 Gt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~ 257 (302)
T PF05621_consen 187 GTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGE 257 (302)
T ss_pred ccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHH
Confidence 55433221111 112345566555444 444443322110 11 1122346889999999998643
No 175
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.71 E-value=0.00014 Score=64.40 Aligned_cols=35 Identities=29% Similarity=0.393 Sum_probs=27.5
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
..+.|+|++|+||||+|+.++.........++++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 47889999999999999999987665543455554
No 176
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.70 E-value=0.0018 Score=64.90 Aligned_cols=95 Identities=11% Similarity=0.085 Sum_probs=64.0
Q ss_pred CCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCCh-hHHH-hcCCCeEEecCCCCHHHHHHHHHHhhhhcCCC
Q 042374 160 QVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDK-QVLD-KCGVNYVYEVEGLEHNKAFELFYRKAFRQNNY 236 (714)
Q Consensus 160 ~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~-~v~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~ 236 (714)
+++-++|+|+++.. ...-+.|+..+..-..++.+|++|... .+.. .......+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~-----~ 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG-----V 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-----C
Confidence 45668999999865 355667777666555677777776654 3332 22345678999999999998886531 1
Q ss_pred ChhHHHHHHHHHHHhcCCChhhHHhh
Q 042374 237 PPDFLGLSLEVVHYARNNPLALEVLG 262 (714)
Q Consensus 237 ~~~~~~~~~~i~~~~~g~Plai~~~~ 262 (714)
++ ..+..++..++|.|+.+..+.
T Consensus 187 ~~---~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 SE---RAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred Ch---HHHHHHHHHcCCCHHHHHHHh
Confidence 11 235677899999998765544
No 177
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.69 E-value=0.00051 Score=78.14 Aligned_cols=116 Identities=16% Similarity=0.172 Sum_probs=66.5
Q ss_pred CCCcccchhhHHHHHhhhccc------C-CCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHH
Q 042374 56 LDGFVGLNSRIEEVKSLLCLE------S-RDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIH 128 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~~------~-~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 128 (714)
...++|.+..++.+.+.+... . ....++.++|++|+|||+||+.++..... ..+.+. ..+....+..
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~---~~~~~d-~se~~~~~~~-- 526 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV---HLERFD-MSEYMEKHTV-- 526 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC---CeEEEe-CchhhhcccH--
Confidence 456899999999888877531 1 12457889999999999999999987632 223332 1111111111
Q ss_pred HHHHHHHHHhCCCCCcccchhhHHHHHHHhcCCc-EEEEEeCCCCC-HHHHHHHhcCC
Q 042374 129 VRDEVISQVLGDKNLKIGTLVIHQNIRKRLRQVK-MLIVLDAVHDG-FTQLESLAGEL 184 (714)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~-~~~~~~l~~~l 184 (714)
..+.|......+. +....+.+.++.++ -+++||+++.. .+.++.|...+
T Consensus 527 ------~~lig~~~gyvg~-~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~l 577 (731)
T TIGR02639 527 ------SRLIGAPPGYVGF-EQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVM 577 (731)
T ss_pred ------HHHhcCCCCCccc-chhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhh
Confidence 2223332221111 11134455554444 59999999865 23445555444
No 178
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.68 E-value=0.0017 Score=66.24 Aligned_cols=158 Identities=12% Similarity=0.044 Sum_probs=88.7
Q ss_pred ccc-chhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhc--ccceEEeeechhcccccChHHHHHHHHH
Q 042374 59 FVG-LNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRH--FQGKCFMANVREESNKMGAIHVRDEVIS 135 (714)
Q Consensus 59 ~vG-r~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (714)
++| -+..++.+.+.+..+ .-.+...++|+.|+||||+|+.+++.+-.. ..... +..+. .-+.+..
T Consensus 7 i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~-------cg~C~----~c~~~~~ 74 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEP-------CGTCT----NCKRIDS 74 (329)
T ss_pred HHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC-------CCcCH----HHHHHhc
Confidence 566 666777777777432 235677899999999999999999865321 00000 00000 0000000
Q ss_pred HH------hCCCCCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCChh-H
Q 042374 136 QV------LGDKNLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDKQ-V 202 (714)
Q Consensus 136 ~~------~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~~-v 202 (714)
.. ...+ ...-..+..+.+.+.+ .+.+=++|+|+++.. ....+.|+..+.....++.+|++|.+.. +
T Consensus 75 ~~hpD~~~i~~~-~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 75 GNHPDVHLVAPD-GQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred CCCCCEEEeccc-cccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 00 0000 0001122222233322 244557899998765 3456777777766566777777776543 3
Q ss_pred HH-hcCCCeEEecCCCCHHHHHHHHHHh
Q 042374 203 LD-KCGVNYVYEVEGLEHNKAFELFYRK 229 (714)
Q Consensus 203 ~~-~~~~~~~~~l~~L~~~~~~~l~~~~ 229 (714)
.. .......+++.+++.++..+.+...
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 22 2234578999999999998888653
No 179
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.68 E-value=0.0043 Score=62.20 Aligned_cols=176 Identities=12% Similarity=0.042 Sum_probs=97.4
Q ss_pred HHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHH------hC
Q 042374 66 IEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQV------LG 139 (714)
Q Consensus 66 ~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 139 (714)
.+.+.+.+..+ .-.+.+.++|+.|+||+++|+.+++.+--.-... -. +... ..-+.+.... +.
T Consensus 12 ~~~l~~~~~~~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~--~~----Cg~C----~sC~~~~~g~HPD~~~i~ 80 (319)
T PRK06090 12 WQNWKAGLDAG-RIPGALLLQSDEGLGVESLVELFSRALLCQNYQS--EA----CGFC----HSCELMQSGNHPDLHVIK 80 (319)
T ss_pred HHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC--CC----CCCC----HHHHHHHcCCCCCEEEEe
Confidence 34455554322 2256788999999999999999998542110000 00 0000 0000000000 00
Q ss_pred -CCCCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCCh-hHHH-hcCCCe
Q 042374 140 -DKNLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDK-QVLD-KCGVNY 210 (714)
Q Consensus 140 -~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~-~v~~-~~~~~~ 210 (714)
......-.++.++.+.+.+ .+..=++|+|+++.. ....+.++..+..-.+++.+|++|.+. .+.. .....+
T Consensus 81 p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq 160 (319)
T PRK06090 81 PEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQ 160 (319)
T ss_pred cCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcce
Confidence 0000001122223333333 234558889999765 356777777776656677666666554 3333 334456
Q ss_pred EEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHhh
Q 042374 211 VYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVLG 262 (714)
Q Consensus 211 ~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 262 (714)
.+.+.+++.+++.+.+.... .+ .+..++..++|.|+.+..+.
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~-----~~-----~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 161 QWVVTPPSTAQAMQWLKGQG-----IT-----VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred eEeCCCCCHHHHHHHHHHcC-----Cc-----hHHHHHHHcCCCHHHHHHHh
Confidence 89999999999999886541 11 23467889999998765553
No 180
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00076 Score=74.22 Aligned_cols=171 Identities=15% Similarity=0.162 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhccCCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhc-c-----cceEE
Q 042374 40 VQKWRDALTEASNSTDLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRH-F-----QGKCF 113 (714)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~-f-----~~~~~ 113 (714)
..++..-+.+.|.--.-+.++||++|+.++++.|........+ ++|.+|+|||++|.-++.++.+. - +..++
T Consensus 153 L~~y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~ 230 (786)
T COG0542 153 LEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIY 230 (786)
T ss_pred HHHHhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEE
Confidence 4455555555555446788999999999999999765444433 78999999999999999875432 1 11111
Q ss_pred eeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHh-cCCcEEEEEeCCCCC----------HHHHHHHhc
Q 042374 114 MANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRL-RQVKMLIVLDAVHDG----------FTQLESLAG 182 (714)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~~l~~ 182 (714)
-- ++. .+........+..+..+.+.+.+ +.++..+++|.+... .+.-+-+..
T Consensus 231 sL---------D~g--------~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKP 293 (786)
T COG0542 231 SL---------DLG--------SLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKP 293 (786)
T ss_pred Ee---------cHH--------HHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHH
Confidence 11 111 11111112222233334444444 345899999998432 122333333
Q ss_pred CCCCCCCCcEEEEEcCChhHHH------hcCCCeEEecCCCCHHHHHHHHHHhh
Q 042374 183 ELDKFTTGSRIIITTRDKQVLD------KCGVNYVYEVEGLEHNKAFELFYRKA 230 (714)
Q Consensus 183 ~l~~~~~gs~IliTtR~~~v~~------~~~~~~~~~l~~L~~~~~~~l~~~~~ 230 (714)
.+. .+.--.|-.||-++.--. ..+.-+.+.+..-+.+++.++++-..
T Consensus 294 aLA-RGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 294 ALA-RGELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHh-cCCeEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 332 222224556765542211 11334678899999999999986543
No 181
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00015 Score=79.62 Aligned_cols=122 Identities=20% Similarity=0.240 Sum_probs=78.8
Q ss_pred CCCCcccchhhHHHHHhhhccc-------CCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLE-------SRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAI 127 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~-------~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 127 (714)
-...++|.+..++.+.+.+... ..+..++...|+.|||||.||+.++..+-+.=+..+-++ +++....+
T Consensus 489 L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-MSEy~EkH--- 564 (786)
T COG0542 489 LKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID-MSEYMEKH--- 564 (786)
T ss_pred HhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec-hHHHHHHH---
Confidence 3467899999999998887531 234578889999999999999999987643223333332 33322222
Q ss_pred HHHHHHHHHHhCCCCCcccchhhHHHHHHHhcCCcE-EEEEeCCCCC-HHHHHHHhcCCCC
Q 042374 128 HVRDEVISQVLGDKNLKIGTLVIHQNIRKRLRQVKM-LIVLDAVHDG-FTQLESLAGELDK 186 (714)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~-~~~~~~l~~~l~~ 186 (714)
..+.+.|..+.-.+..+ ...+.+..+.++| +|.||++... .+.++-+...+.+
T Consensus 565 -----sVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 565 -----SVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred -----HHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 23444565544433333 3678888888987 7778999765 3445555555543
No 182
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.67 E-value=0.0015 Score=65.27 Aligned_cols=30 Identities=33% Similarity=0.592 Sum_probs=26.1
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHHhhc
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQISRH 107 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~ 107 (714)
..+..++|||++|.|||.+|+.+++++.-.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 346789999999999999999999987544
No 183
>PRK10536 hypothetical protein; Provisional
Probab=97.67 E-value=0.00011 Score=69.98 Aligned_cols=138 Identities=12% Similarity=0.110 Sum_probs=74.3
Q ss_pred CCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHH-H-hhcccceEEeeechhcccc-----cChHH
Q 042374 56 LDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQ-I-SRHFQGKCFMANVREESNK-----MGAIH 128 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~-~-~~~f~~~~~~~~~~~~~~~-----~~~~~ 128 (714)
...+.+|......+..++.. ...|.+.|++|.|||+||..++.+ + .+.|+..+.....-..... -+..+
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~e 129 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAE 129 (262)
T ss_pred CccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHH
Confidence 35577888888888887743 348999999999999999999884 3 3445444433211110100 11222
Q ss_pred HHHH-------HHHHHhCCCCCccc---chhhH-HHHHHHhcCCcE---EEEEeCCCCC-HHHHHHHhcCCCCCCCCcEE
Q 042374 129 VRDE-------VISQVLGDKNLKIG---TLVIH-QNIRKRLRQVKM---LIVLDAVHDG-FTQLESLAGELDKFTTGSRI 193 (714)
Q Consensus 129 ~~~~-------~~~~~~~~~~~~~~---~~~~~-~~l~~~l~~k~~---LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~I 193 (714)
.... .+..+++....+.. ..... -.-...+++..+ +||+|++.+. ..+...+. ...+.+|+|
T Consensus 130 K~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~l---tR~g~~sk~ 206 (262)
T PRK10536 130 KFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFL---TRLGENVTV 206 (262)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHH---hhcCCCCEE
Confidence 2111 12222221100000 00000 001234556554 9999999886 23333443 445789999
Q ss_pred EEEcCCh
Q 042374 194 IITTRDK 200 (714)
Q Consensus 194 liTtR~~ 200 (714)
|+|--..
T Consensus 207 v~~GD~~ 213 (262)
T PRK10536 207 IVNGDIT 213 (262)
T ss_pred EEeCChh
Confidence 9987654
No 184
>PRK12377 putative replication protein; Provisional
Probab=97.66 E-value=0.00024 Score=68.49 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=30.2
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
...+.++|.+|+|||+||..+++.+..+...++++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 457899999999999999999998877666666665
No 185
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.66 E-value=0.00028 Score=74.35 Aligned_cols=193 Identities=12% Similarity=0.085 Sum_probs=108.3
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
..+++||-+.....|...+..+. =.+-....|+-|+||||+|+-+++.+--. -+.. ..-+..+..-.++-..-.
T Consensus 14 ~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~----~~~~-~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCE----NGPT-AEPCGKCISCKEINEGSL 87 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCC----CCCC-CCcchhhhhhHhhhcCCc
Confidence 34567999999999999886542 13455689999999999999999854211 0000 000000000011110000
Q ss_pred HHHhCCCCCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCCh-hHHH-hc
Q 042374 135 SQVLGDKNLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDK-QVLD-KC 206 (714)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~-~v~~-~~ 206 (714)
.++..-+...-..++..+.+.+.. .++.=+.|+|+|... ...|+.|+..+..-......|+.|++. .+.. ..
T Consensus 88 ~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIl 167 (515)
T COG2812 88 IDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTIL 167 (515)
T ss_pred ccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhh
Confidence 000111111112233344455443 355668899999765 467888888876544555555555544 3322 23
Q ss_pred CCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCC
Q 042374 207 GVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNP 255 (714)
Q Consensus 207 ~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 255 (714)
...+.|.++.++.++....+...+-.+.-... .+....|++..+|..
T Consensus 168 SRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e--~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 168 SRCQRFDFKRLDLEEIAKHLAAILDKEGINIE--EDALSLIARAAEGSL 214 (515)
T ss_pred hccccccccCCCHHHHHHHHHHHHHhcCCccC--HHHHHHHHHHcCCCh
Confidence 44578999999999999888777643332211 134455555566533
No 186
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.65 E-value=0.00081 Score=61.51 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=38.3
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 57 DGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
.++||-++.++.+.-+- .++..+-+.|.||+|+||||-+..+++++-
T Consensus 27 ~dIVGNe~tv~rl~via--~~gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIA--KEGNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred HHhhCCHHHHHHHHHHH--HcCCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 45899999988887655 345577788999999999999999988653
No 187
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.0036 Score=62.93 Aligned_cols=177 Identities=8% Similarity=0.031 Sum_probs=97.8
Q ss_pred HHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHH------hC
Q 042374 66 IEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQV------LG 139 (714)
Q Consensus 66 ~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 139 (714)
.+.+.+.+..+ .-.+...++|+.|+||+++|+.++..+--.-... ...+... ..-+.+...- +.
T Consensus 11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-----~~~Cg~C----~sC~~~~~g~HPD~~~i~ 80 (325)
T PRK06871 11 YQQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQG-----DQPCGQC----HSCHLFQAGNHPDFHILE 80 (325)
T ss_pred HHHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-----CCCCCCC----HHHHHHhcCCCCCEEEEc
Confidence 34455554322 1246788999999999999999998652110000 0000000 0000000000 00
Q ss_pred CCCCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCCh-hHHHh-cCCCeE
Q 042374 140 DKNLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDK-QVLDK-CGVNYV 211 (714)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~-~v~~~-~~~~~~ 211 (714)
......-.++..+.+.+.+ .+++=++|+|+++.. ....+.|+..+..-.+++.+|++|.+. .+..- ....+.
T Consensus 81 p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~ 160 (325)
T PRK06871 81 PIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQT 160 (325)
T ss_pred cccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceE
Confidence 0000011123333343433 255668889999865 356777777776656677777776655 33322 233568
Q ss_pred EecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhH
Q 042374 212 YEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALE 259 (714)
Q Consensus 212 ~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 259 (714)
+.+.+++.++..+.+..... . .. ..+..++..++|.|..+.
T Consensus 161 ~~~~~~~~~~~~~~L~~~~~--~-~~----~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQSS--A-EI----SEILTALRINYGRPLLAL 201 (325)
T ss_pred EeCCCCCHHHHHHHHHHHhc--c-Ch----HHHHHHHHHcCCCHHHHH
Confidence 99999999999988876531 1 11 235566788999996443
No 188
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0002 Score=76.38 Aligned_cols=162 Identities=19% Similarity=0.220 Sum_probs=93.4
Q ss_pred CCCCcccchhhHHHHHhhhcc----cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCL----ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVR 130 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~----~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 130 (714)
-....+|.++..+++.++|.. +.-+..++++||++|+|||.|++.+++.....|-. +-+-. +.+...++..-
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR-~sLGG---vrDEAEIRGHR 396 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR-ISLGG---VRDEAEIRGHR 396 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE-EecCc---cccHHHhcccc
Confidence 346678999999999998853 23346799999999999999999999988776632 22222 23333333222
Q ss_pred HHHHHHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCC-----HHHHHHHhcCCCC------------C-CCCcE
Q 042374 131 DEVISQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG-----FTQLESLAGELDK------------F-TTGSR 192 (714)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----~~~~~~l~~~l~~------------~-~~gs~ 192 (714)
+..+..+.|. ..+.+++ .+.+.-+++||+++.. =++-..++..+.. . --=|.
T Consensus 397 RTYIGamPGr---------IiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 397 RTYIGAMPGK---------IIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred ccccccCChH---------HHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhh
Confidence 2222221110 1122222 2445678999998542 0112222222210 0 01233
Q ss_pred E-EEEcCCh-h--HHHhcCCCeEEecCCCCHHHHHHHHHHhh
Q 042374 193 I-IITTRDK-Q--VLDKCGVNYVYEVEGLEHNKAFELFYRKA 230 (714)
Q Consensus 193 I-liTtR~~-~--v~~~~~~~~~~~l~~L~~~~~~~l~~~~~ 230 (714)
| .|||-+. + -++.+..-.++++.+.+++|-.++-.++.
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 3 3444332 2 12333455789999999999998888775
No 189
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.61 E-value=0.00025 Score=73.22 Aligned_cols=102 Identities=14% Similarity=0.136 Sum_probs=64.2
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhh--cccceEEeeechhcccccChHHHHHHHH
Q 042374 57 DGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISR--HFQGKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
..+++.+..++.+...+.. .+.+.++|++|+|||++|+.+++.+.. .+..+.|+. +....+..+.+...
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt----FHpsySYeDFI~G~- 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ----FHQSYSYEDFIQGY- 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe----ecccccHHHHhccc-
Confidence 4567788888888888753 346889999999999999999987643 456666776 45455544433211
Q ss_pred HHHhCCCCCcccc---hhhH-HHHHHHhc--CCcEEEEEeCCCCC
Q 042374 135 SQVLGDKNLKIGT---LVIH-QNIRKRLR--QVKMLIVLDAVHDG 173 (714)
Q Consensus 135 ~~~~~~~~~~~~~---~~~~-~~l~~~l~--~k~~LlVlDdv~~~ 173 (714)
.....+. .... +.+.++.. .+++++|+|+++..
T Consensus 246 ------rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 246 ------RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred ------CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 1111110 0111 33333332 46899999999765
No 190
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.0025 Score=64.72 Aligned_cols=177 Identities=11% Similarity=0.047 Sum_probs=98.7
Q ss_pred HHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhc--ccceEEeeechhcccccChHHHHHHHHHH-------
Q 042374 66 IEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRH--FQGKCFMANVREESNKMGAIHVRDEVISQ------- 136 (714)
Q Consensus 66 ~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 136 (714)
.+++.+.+..+ .-.+.+.+.|+.|+||+++|..++..+--. -+.. . +..+. .-+.+...
T Consensus 11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~---~----Cg~C~----sC~~~~~g~HPD~~~ 78 (334)
T PRK07993 11 YEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHK---S----CGHCR----GCQLMQAGTHPDYYT 78 (334)
T ss_pred HHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC---C----CCCCH----HHHHHHcCCCCCEEE
Confidence 44555555322 235678899999999999999999865210 0000 0 00000 00000000
Q ss_pred HhCCCCCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCCh-hHHHh-cCC
Q 042374 137 VLGDKNLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDK-QVLDK-CGV 208 (714)
Q Consensus 137 ~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~-~v~~~-~~~ 208 (714)
+........-.+++.+.+.+.+ .+++=++|+|+++.. ....+.|+..+..-.+++.+|.+|.+. .+..- ...
T Consensus 79 i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSR 158 (334)
T PRK07993 79 LTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSR 158 (334)
T ss_pred EecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc
Confidence 0000000001122333444443 255668999999765 356777777776656677766666654 34322 333
Q ss_pred CeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHh
Q 042374 209 NYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVL 261 (714)
Q Consensus 209 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 261 (714)
.+.+.+.+++.+++.+.+.+.. + .++ +.+..++..++|.|..+..+
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~-~---~~~---~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 159 CRLHYLAPPPEQYALTWLSREV-T---MSQ---DALLAALRLSAGAPGAALAL 204 (334)
T ss_pred cccccCCCCCHHHHHHHHHHcc-C---CCH---HHHHHHHHHcCCCHHHHHHH
Confidence 4578999999999998875531 1 111 33667889999999754433
No 191
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.58 E-value=0.00078 Score=65.33 Aligned_cols=175 Identities=14% Similarity=0.106 Sum_probs=101.1
Q ss_pred CCCCcccchhhHHHHHhhhccc--CCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhc--ccccChHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLE--SRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREE--SNKMGAIHVR 130 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~--~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~--~~~~~~~~~~ 130 (714)
+...++|-.++.+++-+++... -++...|.|+|+.|.|||+|......+ .+.+.....+...... .+...+..+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 4567999999999999888653 245567889999999999998888766 3333333333221111 1223445566
Q ss_pred HHHHHHHhCCCCCcccchhhHHHHHHHhc------CCcEEEEEeCCCCC-----HHHHHHHhcC-CCCCCCCcEEEEEcC
Q 042374 131 DEVISQVLGDKNLKIGTLVIHQNIRKRLR------QVKMLIVLDAVHDG-----FTQLESLAGE-LDKFTTGSRIIITTR 198 (714)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~------~k~~LlVlDdv~~~-----~~~~~~l~~~-l~~~~~gs~IliTtR 198 (714)
+|+..++...........+....+.+.|+ +-++++|+|++|-- ..-+-.+.+. -....|-|-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 66665543322222222333355555553 23688999888643 0111222221 122456677789999
Q ss_pred ChhH-------HHhcCCCeEEecCCCCHHHHHHHHHHhh
Q 042374 199 DKQV-------LDKCGVNYVYEVEGLEHNKAFELFYRKA 230 (714)
Q Consensus 199 ~~~v-------~~~~~~~~~~~l~~L~~~~~~~l~~~~~ 230 (714)
-.-. -....-..++-++.++-+|...+++...
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 5532 1121122356677788888888887765
No 192
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.57 E-value=0.00079 Score=73.59 Aligned_cols=51 Identities=25% Similarity=0.313 Sum_probs=41.5
Q ss_pred CCCCcccchhhHHHHHhhhccc---CCCeEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLE---SRDVRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~---~~~~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
..++++|-++.++++..++... ....+++.|+|++|+||||+++.++..+.
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5567999999999999888642 23356799999999999999999998643
No 193
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.001 Score=69.51 Aligned_cols=153 Identities=18% Similarity=0.206 Sum_probs=87.9
Q ss_pred CCCcccchhhHHHHHhhhcc----------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccC
Q 042374 56 LDGFVGLNSRIEEVKSLLCL----------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMG 125 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 125 (714)
...+=|.++.+.++.+++.. +-...+-|.++|++|.|||.||+.++.+..-.| +. ++
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~----is---- 255 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LS----IS---- 255 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Ee----ec----
Confidence 45577899999888887743 113466789999999999999999998764333 22 11
Q ss_pred hHHHHHHHHHHHhCCCCCcccchhhH-HHHHHHhcCCcEEEEEeCCCCC--------HH----HHHHHhcCCCC---CC-
Q 042374 126 AIHVRDEVISQVLGDKNLKIGTLVIH-QNIRKRLRQVKMLIVLDAVHDG--------FT----QLESLAGELDK---FT- 188 (714)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~--------~~----~~~~l~~~l~~---~~- 188 (714)
.-+++..+.|... +.+ +...+....-++++++|+++.. ++ ....|...+.. ..
T Consensus 256 ----ApeivSGvSGESE------kkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~ 325 (802)
T KOG0733|consen 256 ----APEIVSGVSGESE------KKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKT 325 (802)
T ss_pred ----chhhhcccCcccH------HHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccccc
Confidence 1123333333321 122 3333445677999999999653 11 12223332221 11
Q ss_pred CCcEEE---EEcCChhHHHhc----CCCeEEecCCCCHHHHHHHHHHhhh
Q 042374 189 TGSRII---ITTRDKQVLDKC----GVNYVYEVEGLEHNKAFELFYRKAF 231 (714)
Q Consensus 189 ~gs~Il---iTtR~~~v~~~~----~~~~~~~l~~L~~~~~~~l~~~~~~ 231 (714)
.|-.|+ .|+|...+-... +..+.+.+.--++....+++...+-
T Consensus 326 ~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~ 375 (802)
T KOG0733|consen 326 KGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICR 375 (802)
T ss_pred CCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHh
Confidence 122233 366766543332 3345677776677777777766654
No 194
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.55 E-value=0.00082 Score=76.74 Aligned_cols=173 Identities=20% Similarity=0.213 Sum_probs=95.5
Q ss_pred CCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccC
Q 042374 57 DGFVGLNSRIEEVKSLLCL-----------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMG 125 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 125 (714)
..+.|.+..++.|.+.+.. +-...+-+.++|++|+|||++|+.++++....| +.+. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f---i~v~------~--- 520 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF---IAVR------G--- 520 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe------h---
Confidence 4467888887777776531 112345688999999999999999999765443 1111 0
Q ss_pred hHHHHHHHHHHHhCCCCCcccchhhHHHH-HHHhcCCcEEEEEeCCCCC-------------HHHHHHHhcCCCCC--CC
Q 042374 126 AIHVRDEVISQVLGDKNLKIGTLVIHQNI-RKRLRQVKMLIVLDAVHDG-------------FTQLESLAGELDKF--TT 189 (714)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~~-------------~~~~~~l~~~l~~~--~~ 189 (714)
.+++....|.. ...++.+ ...-...+.+|++|+++.. ......+...+... ..
T Consensus 521 -----~~l~~~~vGes------e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~ 589 (733)
T TIGR01243 521 -----PEILSKWVGES------EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS 589 (733)
T ss_pred -----HHHhhcccCcH------HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC
Confidence 01111112211 1111222 2233466799999998532 01223344443322 22
Q ss_pred CcEEEEEcCChhHHH-h----cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCC
Q 042374 190 GSRIIITTRDKQVLD-K----CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNP 255 (714)
Q Consensus 190 gs~IliTtR~~~v~~-~----~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 255 (714)
+.-||.||...+... . .+....+.++..+.++..++|..+..+... .++ .....+++.+.|.-
T Consensus 590 ~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~-~~~--~~l~~la~~t~g~s 657 (733)
T TIGR01243 590 NVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL-AED--VDLEELAEMTEGYT 657 (733)
T ss_pred CEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCC-Ccc--CCHHHHHHHcCCCC
Confidence 444555665443221 1 134577899999999999999766432211 111 12355667777654
No 195
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.55 E-value=0.00013 Score=66.94 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=27.2
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
..-+.++|.+|+|||.||..+++.+..+-..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 456899999999999999999997665545566665
No 196
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.52 E-value=0.0014 Score=59.06 Aligned_cols=134 Identities=19% Similarity=0.126 Sum_probs=75.8
Q ss_pred cchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhh--------------------cccceEEeeechhc
Q 042374 61 GLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISR--------------------HFQGKCFMANVREE 120 (714)
Q Consensus 61 Gr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~--------------------~f~~~~~~~~~~~~ 120 (714)
|-++..+.|.+++..+ .-.+.+.++|+.|+||+++|..+++.+-. ......|+. .
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~----~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIK----P 75 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEE----T
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEe----c
Confidence 4566677777777433 23557889999999999999999986422 112222221 0
Q ss_pred ccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEE
Q 042374 121 SNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRII 194 (714)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~Il 194 (714)
... ...-..+..+.+.+.+ .++.=++|+|+++.. .+..+.|+..+......+.+|
T Consensus 76 ~~~-------------------~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 76 DKK-------------------KKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTS-------------------SSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred ccc-------------------cchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 000 0001122223333333 245668999999876 466777877776667788888
Q ss_pred EEcCChhH--HHhcCCCeEEecCCCC
Q 042374 195 ITTRDKQV--LDKCGVNYVYEVEGLE 218 (714)
Q Consensus 195 iTtR~~~v--~~~~~~~~~~~l~~L~ 218 (714)
++|++..- .........+.++++|
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEECChHHChHHHHhhceEEecCCCC
Confidence 88887652 2223344567776654
No 197
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.51 E-value=0.0033 Score=67.15 Aligned_cols=170 Identities=13% Similarity=0.153 Sum_probs=105.7
Q ss_pred CCCCcccchhhHHHHHhhhcc---cCCCeEEEEEEccCchhHHHHHHHHHHHHh---h-----cccceEEeeechhcccc
Q 042374 55 DLDGFVGLNSRIEEVKSLLCL---ESRDVRIVGIWGMGGIGKTTIASAVFHQIS---R-----HFQGKCFMANVREESNK 123 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~---~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~---~-----~f~~~~~~~~~~~~~~~ 123 (714)
.+..+-+||.|..+|...+.. ..+....+.|.|.+|.|||+.++.|.+.++ . .|+ .+.+. ...-
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveIN----gm~l 468 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEIN----GLRL 468 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEc----ceee
Confidence 678899999999999988863 223456899999999999999999998543 1 233 23333 2333
Q ss_pred cChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHhc-----CCcEEEEEeCCCCCHHHHHH-HhcCCCC-CCCCcEEEEE
Q 042374 124 MGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRLR-----QVKMLIVLDAVHDGFTQLES-LAGELDK-FTTGSRIIIT 196 (714)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~-l~~~l~~-~~~gs~IliT 196 (714)
....+++..|..++.|......... +.+..+.. .++.++++|+++.....-+. +-..+.| ..++|+++|.
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al---~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi 545 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAAL---EALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVI 545 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHH---HHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEE
Confidence 4577888888888766654333222 44444442 34689999998654111122 2222333 2467776654
Q ss_pred cCC--hh---------HHHhcCCCeEEecCCCCHHHHHHHHHHhhhhc
Q 042374 197 TRD--KQ---------VLDKCGVNYVYEVEGLEHNKAFELFYRKAFRQ 233 (714)
Q Consensus 197 tR~--~~---------v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~ 233 (714)
+=. -. +...++ -..+.+.+.+.++-.++...+.-+.
T Consensus 546 ~IaNTmdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 546 AIANTMDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred EecccccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcch
Confidence 321 11 111122 2457788888888888887775443
No 198
>PRK09183 transposase/IS protein; Provisional
Probab=97.51 E-value=0.00036 Score=68.31 Aligned_cols=35 Identities=26% Similarity=0.210 Sum_probs=26.1
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcccceEEe
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFM 114 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 114 (714)
...+.|+|++|+|||+||..++......-..+.++
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 44688999999999999999988654433334444
No 199
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.51 E-value=0.00028 Score=66.88 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=30.1
Q ss_pred EEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
.++|+|..|+|||||+..+.......|..++++.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 5779999999999999999999999997777664
No 200
>PRK06921 hypothetical protein; Provisional
Probab=97.50 E-value=0.00021 Score=70.16 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=30.1
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhc-ccceEEee
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRH-FQGKCFMA 115 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 115 (714)
....+.++|.+|+|||+||..+++.+..+ -..++|+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 35678999999999999999999987665 45566665
No 201
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.49 E-value=0.0016 Score=60.65 Aligned_cols=174 Identities=17% Similarity=0.160 Sum_probs=96.9
Q ss_pred CCCCcccchhhHHH---HHhhhccc----CCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChH
Q 042374 55 DLDGFVGLNSRIEE---VKSLLCLE----SRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAI 127 (714)
Q Consensus 55 ~~~~~vGr~~~~~~---l~~~l~~~----~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 127 (714)
..+.+||.++.... |+++|... +=.++.|..+|++|.|||.+|+.++++.+-.| +. +.
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~-----l~----vk------ 183 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL-----LL----VK------ 183 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce-----EE----ec------
Confidence 44678998876654 56666432 12367899999999999999999998754322 11 01
Q ss_pred HHHHHHHHHHhCCCCCcccchhhHHHHHH-HhcCCcEEEEEeCCCCC-------------HHHHHHHhcCCCCCC--CCc
Q 042374 128 HVRDEVISQVLGDKNLKIGTLVIHQNIRK-RLRQVKMLIVLDAVHDG-------------FTQLESLAGELDKFT--TGS 191 (714)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~-------------~~~~~~l~~~l~~~~--~gs 191 (714)
..+++..-.|... .....+.+ .-+.-++++.+|+++.. .+..+.|+..+.... .|.
T Consensus 184 --at~liGehVGdga------r~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGV 255 (368)
T COG1223 184 --ATELIGEHVGDGA------RRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGV 255 (368)
T ss_pred --hHHHHHHHhhhHH------HHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCce
Confidence 1222222222211 11122222 22456899999998542 133556666655433 354
Q ss_pred EEEEEcCChhHHHh-c--CCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCC
Q 042374 192 RIIITTRDKQVLDK-C--GVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNN 254 (714)
Q Consensus 192 ~IliTtR~~~v~~~-~--~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 254 (714)
.-|..|...+.... . +..+.++..--+.+|..+++..++-.-..+ ...-.+.++++.+|.
T Consensus 256 vtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plp---v~~~~~~~~~~t~g~ 318 (368)
T COG1223 256 VTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLP---VDADLRYLAAKTKGM 318 (368)
T ss_pred EEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCc---cccCHHHHHHHhCCC
Confidence 44555554443322 1 233456777678899999998876321111 111244566666654
No 202
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.49 E-value=0.00068 Score=65.21 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=29.0
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
...+.++|.+|+|||+||..+++.+...-..++++.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 357889999999999999999998766555555554
No 203
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.49 E-value=5.3e-05 Score=84.06 Aligned_cols=35 Identities=9% Similarity=0.050 Sum_probs=15.4
Q ss_pred cCCCCCCEEEecCCCCCCCCchhhhccccccccccCC
Q 042374 562 LKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGR 598 (714)
Q Consensus 562 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 598 (714)
.++++|..|+++++++... .+++++++|+.|.+.+
T Consensus 170 ~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRN 204 (699)
T ss_pred hccCccceeecCCCCccCc--HHHhccccHHHHhccC
Confidence 3444444445444443221 3444444444444444
No 204
>PRK06526 transposase; Provisional
Probab=97.46 E-value=0.00027 Score=68.71 Aligned_cols=35 Identities=23% Similarity=0.143 Sum_probs=26.6
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcccceEEe
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFM 114 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 114 (714)
...+.++|++|+|||+||..++.+...+-..+.|+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~ 132 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA 132 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh
Confidence 45689999999999999999998765443334443
No 205
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.46 E-value=0.0011 Score=75.73 Aligned_cols=174 Identities=14% Similarity=0.109 Sum_probs=93.5
Q ss_pred CCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccC
Q 042374 57 DGFVGLNSRIEEVKSLLCL-----------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMG 125 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 125 (714)
+.+.|.+..++.+.+++.. +-...+.|.++|++|+|||+||+.+++.....| +.+. ..
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~------- 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GP------- 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cH-------
Confidence 3478999999888777632 112346788999999999999999998765432 2221 00
Q ss_pred hHHHHHHHHHHHhCCCCCcccchhhH-HHHHHHhcCCcEEEEEeCCCCC------------HHHHHHHhcCCCCC-CCCc
Q 042374 126 AIHVRDEVISQVLGDKNLKIGTLVIH-QNIRKRLRQVKMLIVLDAVHDG------------FTQLESLAGELDKF-TTGS 191 (714)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~------------~~~~~~l~~~l~~~-~~gs 191 (714)
++ .....+ ...+.. ..+.......+.+|++|+++.. ......+...+... ..+.
T Consensus 247 --~i----~~~~~g------~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 247 --EI----MSKYYG------ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred --HH----hccccc------HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 00 000000 001111 2222333456789999998532 01122333333222 2233
Q ss_pred EEEE-EcCChh-HHHhc----CCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCCh
Q 042374 192 RIII-TTRDKQ-VLDKC----GVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPL 256 (714)
Q Consensus 192 ~Ili-TtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 256 (714)
.++| ||.... +.... .....+.+...+.++..+++..+........ ......+++.+.|.--
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~---d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE---DVDLDKLAEVTHGFVG 382 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc---ccCHHHHHHhCCCCCH
Confidence 3444 444332 21111 2345678888899999999886542211111 1234567777777653
No 206
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.45 E-value=0.0019 Score=74.76 Aligned_cols=134 Identities=19% Similarity=0.227 Sum_probs=74.5
Q ss_pred CCCcccchhhHHHHHhhhccc------C-CCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHH
Q 042374 56 LDGFVGLNSRIEEVKSLLCLE------S-RDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIH 128 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~~------~-~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 128 (714)
...++|.+..++.+.+.+... . ....++.++|++|+|||++|+.++......-...+.+. ........
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d-~s~~~~~~---- 638 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRID-MSEYMEKH---- 638 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEe-chhhcccc----
Confidence 356899999999988877531 1 12457889999999999999999987643323333333 11111111
Q ss_pred HHHHHHHHHhCCCCCcccchhhHHHHHHHhcCCc-EEEEEeCCCCC-HHHHHHHhcCCCCC-----------CCCcEEEE
Q 042374 129 VRDEVISQVLGDKNLKIGTLVIHQNIRKRLRQVK-MLIVLDAVHDG-FTQLESLAGELDKF-----------TTGSRIII 195 (714)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~-~~~~~~l~~~l~~~-----------~~gs~Ili 195 (714)
....+.|....-.+.. ....+.+.++.++ .+++||+++.. ...++.|...+..+ ...+-||+
T Consensus 639 ----~~~~l~g~~~g~~g~~-~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~ 713 (852)
T TIGR03346 639 ----SVARLIGAPPGYVGYE-EGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIM 713 (852)
T ss_pred ----hHHHhcCCCCCccCcc-cccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEE
Confidence 1122233322211111 1133444443333 48999999865 34455555444222 12344777
Q ss_pred EcCC
Q 042374 196 TTRD 199 (714)
Q Consensus 196 TtR~ 199 (714)
||.-
T Consensus 714 TSn~ 717 (852)
T TIGR03346 714 TSNL 717 (852)
T ss_pred eCCc
Confidence 7764
No 207
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.45 E-value=1.7e-05 Score=73.86 Aligned_cols=138 Identities=18% Similarity=0.101 Sum_probs=93.9
Q ss_pred cccCCCCCCcEEecCCCCCCcccccc----ccCCCCCCEEEecCCCCCCCCch-------------hhhccccccccccC
Q 042374 535 SSVGCLTNLKVLSLSQCPRLKRISTS----ILKLKSLQNLYLIQCFDLENFPE-------------ILEKMEYLNYNALG 597 (714)
Q Consensus 535 ~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~-------------~l~~l~~L~~L~l~ 597 (714)
+.+-+|++|+..+|++|-+....|+. +++-+.|.+|.+.+|.....-.. ....-|.|+.....
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 44667899999999999886665543 55677899999998875421111 12234678888888
Q ss_pred CccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc----------CCCCCCCCEEECCCCCCcc-----cch
Q 042374 598 RTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL----------NGCLSSLEYLDLSGNDFES-----LPA 662 (714)
Q Consensus 598 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~----------~~~l~~L~~L~L~~n~l~~-----lp~ 662 (714)
.|++...|... +...+..-..|+.+.+..|.+.. +.-+.+|+.|+|..|-++. +..
T Consensus 166 rNRlengs~~~---------~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~ 236 (388)
T COG5238 166 RNRLENGSKEL---------SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD 236 (388)
T ss_pred cchhccCcHHH---------HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH
Confidence 88887655432 11113344678888888888866 3346789999999988772 333
Q ss_pred hhccCCCCCeeccccCccc
Q 042374 663 SIKQLSRLRKLHLCYCDKL 681 (714)
Q Consensus 663 ~l~~l~~L~~L~l~~~~~~ 681 (714)
.+...+.|+.|.+..|-+.
T Consensus 237 al~~W~~lrEL~lnDClls 255 (388)
T COG5238 237 ALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred Hhcccchhhhccccchhhc
Confidence 4455567888888888654
No 208
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.44 E-value=1e-05 Score=75.36 Aligned_cols=231 Identities=14% Similarity=0.011 Sum_probs=125.7
Q ss_pred cccccEEeccCCccccccC-----CCCCCCCCcEEecCCCC---CCccCC-------ccccCCCCCCEEecCCCCCCCcc
Q 042374 426 LLSSKFIDLSHSQYLIRMP-----DLSEAPNLERINLLNCT---NLVSVP-------SSIQNFNHLSMLCFEGCKSLRSF 490 (714)
Q Consensus 426 ~~~L~~L~l~~~~~~~~~~-----~~~~l~~L~~L~L~~~~---~~~~lp-------~~~~~l~~L~~L~l~~~~~~~~~ 490 (714)
+..++.++||+|.+.+.-. .+.+-.+|++.+++.-- ....++ +.+.++++|+..+|+.|-+-...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4556666677766544322 14455667777766421 111222 34556777888888777655555
Q ss_pred CCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEec--------------cccCCCCCCcEEecCCCCCCcc
Q 042374 491 PSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVP--------------SSVGCLTNLKVLSLSQCPRLKR 556 (714)
Q Consensus 491 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp--------------~~~~~l~~L~~L~l~~~~~~~~ 556 (714)
|..+. .+......|.+|++++|.+..+. ....+-+.|++.....|.+...
T Consensus 109 ~e~L~----------------d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng 172 (388)
T COG5238 109 PEELG----------------DLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG 172 (388)
T ss_pred chHHH----------------HHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC
Confidence 44321 11111223344444444333221 1123346677777766654321
Q ss_pred c----cccccCCCCCCEEEecCCCCCCC-----CchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCC
Q 042374 557 I----STSILKLKSLQNLYLIQCFDLEN-----FPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTND 627 (714)
Q Consensus 557 ~----~~~~~~l~~L~~L~l~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 627 (714)
. ...+..-..|+++.+..|.+... .-..+..+.+|+.|++..|.++...+. .+...+..++.
T Consensus 173 s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~---------~La~al~~W~~ 243 (388)
T COG5238 173 SKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSR---------YLADALCEWNL 243 (388)
T ss_pred cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHH---------HHHHHhcccch
Confidence 1 11222235777888777766432 112345567888888888877644332 12223556677
Q ss_pred CCceeccCCCcCcC-----------CCCCCCCEEECCCCCCc-------ccchhh-ccCCCCCeeccccCccc
Q 042374 628 LEGLSLYLRNYALN-----------GCLSSLEYLDLSGNDFE-------SLPASI-KQLSRLRKLHLCYCDKL 681 (714)
Q Consensus 628 L~~L~l~~~~~~~~-----------~~l~~L~~L~L~~n~l~-------~lp~~l-~~l~~L~~L~l~~~~~~ 681 (714)
|+.|.+..|-++.- ...|+|..|-...|.+. ++|... .++|-|..|.+.+|.+.
T Consensus 244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 88888888876652 23677888877777433 234332 35677777788777643
No 209
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.44 E-value=0.0014 Score=68.39 Aligned_cols=45 Identities=20% Similarity=0.124 Sum_probs=38.1
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 57 DGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
..++||++.++.+...+..+. .|.|.|++|+|||++|+.+.....
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHHhc
Confidence 459999999999988875432 578999999999999999998654
No 210
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.43 E-value=0.0026 Score=62.63 Aligned_cols=25 Identities=36% Similarity=0.383 Sum_probs=21.3
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHh
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
+.|.+.|++|+|||++|+.++....
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 3567999999999999999997553
No 211
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.42 E-value=0.0094 Score=61.27 Aligned_cols=74 Identities=11% Similarity=0.150 Sum_probs=46.6
Q ss_pred hhhHHHHHhhhcccC-CCeEEEEEEccCchhHHHHHHHHHHHHhhc---ccceEEeeechhcccccChHHHHHHHHHH
Q 042374 63 NSRIEEVKSLLCLES-RDVRIVGIWGMGGIGKTTIASAVFHQISRH---FQGKCFMANVREESNKMGAIHVRDEVISQ 136 (714)
Q Consensus 63 ~~~~~~l~~~l~~~~-~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~---f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (714)
+.-.+.|.+.+...+ .+..+|+|.|.=|+|||++.+.+.+++.+. -...+++..+...........++.++..+
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~ 79 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQ 79 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHH
Confidence 344566777776543 678899999999999999999999987766 22344444333322232333444444443
No 212
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=5.8e-05 Score=71.39 Aligned_cols=175 Identities=17% Similarity=0.076 Sum_probs=110.2
Q ss_pred ccceEecccccceE---eccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCC-CCCchhhhcccccccc
Q 042374 519 SVTKLILWETAIKE---VPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDL-ENFPEILEKMEYLNYN 594 (714)
Q Consensus 519 ~L~~L~l~~~~i~~---lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L 594 (714)
.++.++|.+|.|.. +-..+.+++.|++|+|+.|++...+...-..+.+|++|.+.+.... ......+..++.++.|
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 44555555566553 3334678899999999998875544322245678999999886543 2334567778888999
Q ss_pred ccCCccccccCccccCCCCCcccCCCccCCC-CCCCceeccCCCcCc-------CCCCCCCCEEECCCCCCcccch--hh
Q 042374 595 ALGRTKIRELPSTFEKGEGTESQLPSSVADT-NDLEGLSLYLRNYAL-------NGCLSSLEYLDLSGNDFESLPA--SI 664 (714)
Q Consensus 595 ~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~-~~L~~L~l~~~~~~~-------~~~l~~L~~L~L~~n~l~~lp~--~l 664 (714)
.++.|++..+...-. + ...+ +.+++|.+..|.... ..-+|++..+-+..|.+.+... ..
T Consensus 152 HmS~N~~rq~n~Dd~-----c------~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~s 220 (418)
T KOG2982|consen 152 HMSDNSLRQLNLDDN-----C------IEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGS 220 (418)
T ss_pred hhccchhhhhccccc-----c------ccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccC
Confidence 998886654432100 0 1111 234444444443221 2347888888888888875533 35
Q ss_pred ccCCCCCeeccccCccccccCC-----CcCcccEeecccCcccccc
Q 042374 665 KQLSRLRKLHLCYCDKLQSIPE-----LPLSLKWLDASNCERLQTF 705 (714)
Q Consensus 665 ~~l~~L~~L~l~~~~~~~~lp~-----~~~~L~~L~l~~c~~l~~l 705 (714)
..++.+-.|+|..+++ .++.. -+++|..|.++++|.+..+
T Consensus 221 e~~p~~~~LnL~~~~i-dswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 221 EPFPSLSCLNLGANNI-DSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred CCCCcchhhhhccccc-ccHHHHHHHcCCchhheeeccCCcccccc
Confidence 5677888888887764 33321 3678899999998876654
No 213
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.39 E-value=0.0028 Score=73.11 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=66.1
Q ss_pred CCCcccchhhHHHHHhhhccc-------CCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHH
Q 042374 56 LDGFVGLNSRIEEVKSLLCLE-------SRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIH 128 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~~-------~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 128 (714)
...++|.+..++.+...+... .....++.++|+.|+|||++|+.+++.....-...+.+. ......
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id-~se~~~------ 639 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRID-MSEFME------ 639 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEE-hHHhhh------
Confidence 456889999988888877531 112357889999999999999999986543323333333 111111
Q ss_pred HHHHHHHHHhCCCCCcccchhhHHHHHHHhcCC-cEEEEEeCCCCC-HHHHHHHhcCC
Q 042374 129 VRDEVISQVLGDKNLKIGTLVIHQNIRKRLRQV-KMLIVLDAVHDG-FTQLESLAGEL 184 (714)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~-~~~~~~l~~~l 184 (714)
......++|......+.. ....+.+.++.+ .-+|+||++... ...++.+...+
T Consensus 640 --~~~~~~LiG~~pgy~g~~-~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~il 694 (857)
T PRK10865 640 --KHSVSRLVGAPPGYVGYE-EGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL 694 (857)
T ss_pred --hhhHHHHhCCCCcccccc-hhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHH
Confidence 112233344332211111 112334444333 368999999754 24445554433
No 214
>PRK08118 topology modulation protein; Reviewed
Probab=97.38 E-value=0.00012 Score=66.51 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=26.8
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhh---cccceEEe
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISR---HFQGKCFM 114 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~---~f~~~~~~ 114 (714)
+.|.|+|++|+||||||+.+++...- +|+..+|-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 35889999999999999999987542 45656653
No 215
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.38 E-value=0.02 Score=58.06 Aligned_cols=93 Identities=13% Similarity=0.112 Sum_probs=61.5
Q ss_pred CCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCC-hhHHHh-cCCCeEEecCCCCHHHHHHHHHHhhhhcCCC
Q 042374 160 QVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRD-KQVLDK-CGVNYVYEVEGLEHNKAFELFYRKAFRQNNY 236 (714)
Q Consensus 160 ~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~ 236 (714)
++.=++|+|+++.. ....+.|+..+..-.+++.+|++|.+ ..+..- ....+.+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~--~--- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG--V--- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC--C---
Confidence 44558889999865 46677888777766667766655554 444332 3334789999999999999887651 1
Q ss_pred ChhHHHHHHHHHHHhcCCChhhHHhh
Q 042374 237 PPDFLGLSLEVVHYARNNPLALEVLG 262 (714)
Q Consensus 237 ~~~~~~~~~~i~~~~~g~Plai~~~~ 262 (714)
++ ...++..++|.|..+..+.
T Consensus 206 ~~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 AD-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred Ch-----HHHHHHHcCCCHHHHHHHH
Confidence 11 1235677899997554443
No 216
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.36 E-value=0.003 Score=71.14 Aligned_cols=115 Identities=14% Similarity=0.157 Sum_probs=66.1
Q ss_pred CCCcccchhhHHHHHhhhccc-------CCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHH
Q 042374 56 LDGFVGLNSRIEEVKSLLCLE-------SRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIH 128 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~~-------~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 128 (714)
...++|.++.++.+.+.+... ......+.++|++|+|||++|+.++...... .+.+. ........
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~---~i~id-~se~~~~~---- 528 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIE---LLRFD-MSEYMERH---- 528 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCC---cEEee-chhhcccc----
Confidence 356899999999988877521 1234578999999999999999999876322 22222 21111111
Q ss_pred HHHHHHHHHhCCCCCcccchhhHHHHHHHhcCC-cEEEEEeCCCCC-HHHHHHHhcC
Q 042374 129 VRDEVISQVLGDKNLKIGTLVIHQNIRKRLRQV-KMLIVLDAVHDG-FTQLESLAGE 183 (714)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~-~~~~~~l~~~ 183 (714)
....++|......+. +....+.+.+..+ .-+++||+++.. .+.++.+...
T Consensus 529 ----~~~~LiG~~~gyvg~-~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ 580 (758)
T PRK11034 529 ----TVSRLIGAPPGYVGF-DQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQV 580 (758)
T ss_pred ----cHHHHcCCCCCcccc-cccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHH
Confidence 123334543222111 1113344444433 469999999876 2334444443
No 217
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.32 E-value=0.0012 Score=75.68 Aligned_cols=133 Identities=18% Similarity=0.216 Sum_probs=73.7
Q ss_pred CCCcccchhhHHHHHhhhcc-------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHH
Q 042374 56 LDGFVGLNSRIEEVKSLLCL-------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIH 128 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~-------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 128 (714)
...++|.+..++.+.+.+.. ......++.++|++|+|||.+|+.++..+-......+-+. +......
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~d-mse~~~~----- 638 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITIN-MSEFQEA----- 638 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEe-HHHhhhh-----
Confidence 45789999999988877742 1123457899999999999999999987643322222222 1111111
Q ss_pred HHHHHHHHHhCCCCCcccchhhHHHHHHHhc-CCcEEEEEeCCCCC-HHHHHHHhcCCCCCC-----------CCcEEEE
Q 042374 129 VRDEVISQVLGDKNLKIGTLVIHQNIRKRLR-QVKMLIVLDAVHDG-FTQLESLAGELDKFT-----------TGSRIII 195 (714)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~-----------~gs~Ili 195 (714)
.-...++|....-.+..+ ...+.+.++ ...-+|+||+++.. .+.++.|...+..+. ..+-||+
T Consensus 639 ---~~~~~l~g~~~gyvg~~~-~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~ 714 (852)
T TIGR03345 639 ---HTVSRLKGSPPGYVGYGE-GGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILL 714 (852)
T ss_pred ---hhhccccCCCCCcccccc-cchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEE
Confidence 112223343322222111 123334443 34479999999765 234455544443221 3456677
Q ss_pred EcC
Q 042374 196 TTR 198 (714)
Q Consensus 196 TtR 198 (714)
||.
T Consensus 715 TSN 717 (852)
T TIGR03345 715 TSN 717 (852)
T ss_pred eCC
Confidence 765
No 218
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.32 E-value=0.00099 Score=64.29 Aligned_cols=48 Identities=21% Similarity=0.222 Sum_probs=36.9
Q ss_pred HHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 68 EVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 68 ~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
.|.++|..+=....++.|+|.+|+|||++|..++......-..++|+.
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 344555433345779999999999999999999987666667788886
No 219
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.31 E-value=0.0015 Score=65.45 Aligned_cols=119 Identities=11% Similarity=0.143 Sum_probs=64.0
Q ss_pred cchhhHHHHHhhhccc--CCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHh
Q 042374 61 GLNSRIEEVKSLLCLE--SRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVL 138 (714)
Q Consensus 61 Gr~~~~~~l~~~l~~~--~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (714)
+|....+...+++..- ....+-+.|+|..|+|||.||..+++.+..+-..+.|+. ...++.++-...
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~----------~~~l~~~lk~~~- 203 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH----------FPEFIRELKNSI- 203 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE----------HHHHHHHHHHHH-
Confidence 4444444444444321 123467899999999999999999998766545556664 122333333331
Q ss_pred CCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCC-HHHHH--HHhcCC-CCC-CCCcEEEEEcCC
Q 042374 139 GDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG-FTQLE--SLAGEL-DKF-TTGSRIIITTRD 199 (714)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~--~l~~~l-~~~-~~gs~IliTtR~ 199 (714)
+.. . .....+.+. +.=||||||+... ...|. .+...+ ... ..+-.+|+||--
T Consensus 204 ~~~-----~---~~~~l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 204 SDG-----S---VKEKIDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred hcC-----c---HHHHHHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 111 0 122223333 4558999999543 13333 233322 211 234457777763
No 220
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.29 E-value=0.00022 Score=63.82 Aligned_cols=60 Identities=18% Similarity=0.171 Sum_probs=27.2
Q ss_pred CCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccc
Q 042374 542 NLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRE 603 (714)
Q Consensus 542 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 603 (714)
+...++|++|.+.. + ..+..++.|.+|.+.+|++...-|..-..+++|+.|.+.+|+|..
T Consensus 43 ~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~ 102 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE 102 (233)
T ss_pred ccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh
Confidence 44455555554321 1 134445555555555555444333333334445555555554443
No 221
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.27 E-value=0.0011 Score=76.37 Aligned_cols=135 Identities=16% Similarity=0.169 Sum_probs=75.5
Q ss_pred CCCcccchhhHHHHHhhhccc------C-CCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHH
Q 042374 56 LDGFVGLNSRIEEVKSLLCLE------S-RDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIH 128 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~~------~-~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 128 (714)
...++|.+..++.+.+.+... . ....++.++|+.|+|||+||+.+++.+-..-...+-+. ..+....+.+.
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d-~s~~~~~~~~~- 585 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLD-MSEYMEKHTVS- 585 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEE-chhccccccHH-
Confidence 467899999999988877421 1 12456789999999999999999987533222222222 22222222221
Q ss_pred HHHHHHHHHhCCCCCcccchhhHHHHHHHhcCCc-EEEEEeCCCCC-HHHHHHHhcCCCCC-----------CCCcEEEE
Q 042374 129 VRDEVISQVLGDKNLKIGTLVIHQNIRKRLRQVK-MLIVLDAVHDG-FTQLESLAGELDKF-----------TTGSRIII 195 (714)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~-~~~~~~l~~~l~~~-----------~~gs~Ili 195 (714)
.+.|....-.+. +....+.+.++.++ -+++||+++.. .+.++.|...+..+ ...+-||+
T Consensus 586 -------~l~g~~~gyvg~-~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~ 657 (821)
T CHL00095 586 -------KLIGSPPGYVGY-NEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIM 657 (821)
T ss_pred -------HhcCCCCcccCc-CccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEE
Confidence 123332111111 11134556665555 58889999865 34455555544332 13445667
Q ss_pred EcCCh
Q 042374 196 TTRDK 200 (714)
Q Consensus 196 TtR~~ 200 (714)
||...
T Consensus 658 Tsn~g 662 (821)
T CHL00095 658 TSNLG 662 (821)
T ss_pred eCCcc
Confidence 76643
No 222
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.25 E-value=0.0014 Score=66.07 Aligned_cols=35 Identities=14% Similarity=0.257 Sum_probs=29.5
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
..+.++|.+|+|||+||..+++.+..+-..++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 67899999999999999999998766555666665
No 223
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.25 E-value=0.00023 Score=47.81 Aligned_cols=35 Identities=31% Similarity=0.490 Sum_probs=20.5
Q ss_pred ccceEecccccceEeccccCCCCCCcEEecCCCCC
Q 042374 519 SVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPR 553 (714)
Q Consensus 519 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~ 553 (714)
+|++|++++|.|+.+|..+++|++|+.|++++|++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 45556666666666666566666666666666654
No 224
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.25 E-value=0.00041 Score=62.18 Aligned_cols=98 Identities=20% Similarity=0.183 Sum_probs=60.0
Q ss_pred CCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc-----
Q 042374 566 SLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL----- 640 (714)
Q Consensus 566 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~----- 640 (714)
+...+++++|.+... ..|..+++|..|.+++|+|+.+...+ -.-+++|+.|.|.+|++..
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L-------------~~~~p~l~~L~LtnNsi~~l~dl~ 107 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDL-------------DTFLPNLKTLILTNNSIQELGDLD 107 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccch-------------hhhccccceEEecCcchhhhhhcc
Confidence 455666666654321 34556667777777777777665543 3345667777777777655
Q ss_pred -CCCCCCCCEEECCCCCCcccch----hhccCCCCCeeccccC
Q 042374 641 -NGCLSSLEYLDLSGNDFESLPA----SIKQLSRLRKLHLCYC 678 (714)
Q Consensus 641 -~~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~l~~~ 678 (714)
+..+|.|++|.+-+|.++.-+. .+..+|+|+.|+..+-
T Consensus 108 pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 108 PLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 3346677777777776664322 3456677777776543
No 225
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.24 E-value=0.0043 Score=67.53 Aligned_cols=48 Identities=31% Similarity=0.522 Sum_probs=38.1
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
..+.++|.+..++.+...+... ...-|.|+|++|+|||++|+.+++..
T Consensus 63 ~f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CHHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4456999999999998776433 23456799999999999999998754
No 226
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.24 E-value=0.0086 Score=60.62 Aligned_cols=89 Identities=12% Similarity=0.126 Sum_probs=50.4
Q ss_pred CCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCChh-HHHh-cCCCeEEecCCCCHHHHHHHHHHhhhhcCCC
Q 042374 160 QVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDKQ-VLDK-CGVNYVYEVEGLEHNKAFELFYRKAFRQNNY 236 (714)
Q Consensus 160 ~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~ 236 (714)
+++-++|+|+++.. ....+.+...+.....++.+|++|.+.. +... ......+.+.+++.+++.+.+.+.. .
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~--~--- 186 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG--V--- 186 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC--C---
Confidence 33445566888654 2334444444433334566777777654 3322 2234678999999999998886541 1
Q ss_pred ChhHHHHHHHHHHHhcCCChhh
Q 042374 237 PPDFLGLSLEVVHYARNNPLAL 258 (714)
Q Consensus 237 ~~~~~~~~~~i~~~~~g~Plai 258 (714)
... . ..+..++|-|+.+
T Consensus 187 ~~~--~---~~l~~~~g~p~~~ 203 (325)
T PRK08699 187 AEP--E---ERLAFHSGAPLFD 203 (325)
T ss_pred CcH--H---HHHHHhCCChhhh
Confidence 111 1 1234678988653
No 227
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.24 E-value=0.012 Score=55.65 Aligned_cols=226 Identities=14% Similarity=0.191 Sum_probs=127.6
Q ss_pred CcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhh------cccceEEeeechh------cccc--
Q 042374 58 GFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISR------HFQGKCFMANVRE------ESNK-- 123 (714)
Q Consensus 58 ~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~~~~~------~~~~-- 123 (714)
...++++....+..+.. .++..-..++|++|.||-|.+..+.+++-+ +-+...|...... ++..
T Consensus 14 ~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yH 91 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYH 91 (351)
T ss_pred hcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccce
Confidence 36777777777777664 345677889999999999998888875422 3344445432211 0100
Q ss_pred ---------cChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHhcCCcE-EEEEeCCCCC-HHHHHHHhcCCCCCCCCcE
Q 042374 124 ---------MGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRLRQVKM-LIVLDAVHDG-FTQLESLAGELDKFTTGSR 192 (714)
Q Consensus 124 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~ 192 (714)
..-+-++++++.++......+.. ..+.| ++|+-.++.. .+.-..+.+........+|
T Consensus 92 lEitPSDaG~~DRvViQellKevAQt~qie~~------------~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~R 159 (351)
T KOG2035|consen 92 LEITPSDAGNYDRVVIQELLKEVAQTQQIETQ------------GQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCR 159 (351)
T ss_pred EEeChhhcCcccHHHHHHHHHHHHhhcchhhc------------cccceEEEEEechHhhhHHHHHHHHHHHHHHhcCce
Confidence 11123344444443222111110 11233 5666666654 4555666666666677888
Q ss_pred EEEEcCCh--hHHHhcCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHhhhhhc--cC
Q 042374 193 IIITTRDK--QVLDKCGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVLGSSLY--QK 268 (714)
Q Consensus 193 IliTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~--~~ 268 (714)
+|+...+- -..+.-...-.++++..+++|....++..+-.+...-| .+++.+|+++++|+---+-.+....+ +.
T Consensus 160 lIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~ 237 (351)
T KOG2035|consen 160 LILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNE 237 (351)
T ss_pred EEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhccc
Confidence 87653322 12222223356899999999999999888755543333 47899999999997643333222222 11
Q ss_pred ---------CHHHHHHHHHHHhc-----CCCchHHHHHHHhhhcC
Q 042374 269 ---------SKQQWEDRLHNLRL-----ISEPNIYKVLKISYDEL 299 (714)
Q Consensus 269 ---------~~~~w~~~l~~l~~-----~~~~~~~~~l~ls~~~L 299 (714)
...+|+-.+.+... ..+..+..+-..=|+-|
T Consensus 238 ~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 238 PFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred cccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 35679887776432 22334444444444433
No 228
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.24 E-value=0.0026 Score=65.49 Aligned_cols=142 Identities=15% Similarity=0.108 Sum_probs=80.9
Q ss_pred CcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcc---------------------cceEEeee
Q 042374 58 GFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHF---------------------QGKCFMAN 116 (714)
Q Consensus 58 ~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~~~~~~ 116 (714)
.++|-+....++..+......-.+.+.++|++|+||||+|..+++.+-... +.+..+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~- 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN- 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec-
Confidence 467777777777777754333344589999999999999999998764321 1222222
Q ss_pred chhcccccC---hHHHHHHHHHHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcE
Q 042374 117 VREESNKMG---AIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSR 192 (714)
Q Consensus 117 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~ 192 (714)
.+.... ..+.++++........ ..++.-++++|+++.. .+..+.+...+......+.
T Consensus 81 ---~s~~~~~~i~~~~vr~~~~~~~~~~----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 81 ---PSDLRKIDIIVEQVRELAEFLSESP----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred ---ccccCCCcchHHHHHHHHHHhccCC----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 111111 1222222222210000 0256679999999876 3445666666665667788
Q ss_pred EEEEcCChh-HHH-hcCCCeEEecCCCCH
Q 042374 193 IIITTRDKQ-VLD-KCGVNYVYEVEGLEH 219 (714)
Q Consensus 193 IliTtR~~~-v~~-~~~~~~~~~l~~L~~ 219 (714)
+|++|.... +.. .......+++++.+.
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCCchH
Confidence 888887442 222 122335566766333
No 229
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.23 E-value=0.0015 Score=63.53 Aligned_cols=75 Identities=16% Similarity=0.255 Sum_probs=46.5
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRL 158 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 158 (714)
+..-+.++|.+|+|||.||.++++++...-..+.++. +.+++.++.... ... . ...++.+.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~----------~~el~~~Lk~~~-~~~----~---~~~~l~~~l 165 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT----------APDLLSKLKAAF-DEG----R---LEEKLLREL 165 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHH-hcC----c---hHHHHHHHh
Confidence 4557899999999999999999998875445566665 234444444332 110 0 002333333
Q ss_pred cCCcEEEEEeCCCC
Q 042374 159 RQVKMLIVLDAVHD 172 (714)
Q Consensus 159 ~~k~~LlVlDdv~~ 172 (714)
. +-=||||||+-.
T Consensus 166 ~-~~dlLIiDDlG~ 178 (254)
T COG1484 166 K-KVDLLIIDDIGY 178 (254)
T ss_pred h-cCCEEEEecccC
Confidence 2 334899999854
No 230
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0016 Score=62.70 Aligned_cols=77 Identities=16% Similarity=0.329 Sum_probs=46.3
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHH----hhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhH-HHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQI----SRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIH-QNI 154 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~----~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l 154 (714)
.+.|.++|++|.|||+|++++++.. .++|.....+. .+ ...+++.+++++. .-+... ++|
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE----in--------shsLFSKWFsESg---KlV~kmF~kI 241 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE----IN--------SHSLFSKWFSESG---KLVAKMFQKI 241 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE----Ee--------hhHHHHHHHhhhh---hHHHHHHHHH
Confidence 5789999999999999999999853 34555444443 11 1223333333321 112222 566
Q ss_pred HHHhcCCc--EEEEEeCCC
Q 042374 155 RKRLRQVK--MLIVLDAVH 171 (714)
Q Consensus 155 ~~~l~~k~--~LlVlDdv~ 171 (714)
.+.+.++. +.+.+|+|.
T Consensus 242 ~ELv~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 242 QELVEDRGNLVFVLIDEVE 260 (423)
T ss_pred HHHHhCCCcEEEEEeHHHH
Confidence 66666554 455678883
No 231
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0048 Score=65.86 Aligned_cols=155 Identities=14% Similarity=0.088 Sum_probs=82.0
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhh-cccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHh
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISR-HFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRL 158 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 158 (714)
.+-|.|.|+.|+|||+||+++++.+.+ ....+.++.+. . .....+..+++.+. ..+.+.+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs-~-l~~~~~e~iQk~l~-----------------~vfse~~ 491 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCS-T-LDGSSLEKIQKFLN-----------------NVFSEAL 491 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEech-h-ccchhHHHHHHHHH-----------------HHHHHHH
Confidence 457889999999999999999997653 23334444421 1 11112222222221 3344456
Q ss_pred cCCcEEEEEeCCCCC--------------HHHHHHHh-cCCCC-CCCCcE--EEEEcCChhHHH-----hcCCCeEEecC
Q 042374 159 RQVKMLIVLDAVHDG--------------FTQLESLA-GELDK-FTTGSR--IIITTRDKQVLD-----KCGVNYVYEVE 215 (714)
Q Consensus 159 ~~k~~LlVlDdv~~~--------------~~~~~~l~-~~l~~-~~~gs~--IliTtR~~~v~~-----~~~~~~~~~l~ 215 (714)
.-.+-+|||||++.. ...+..+. ..... ...+.+ +|.|....+... ......+..++
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 677889999998432 01111111 11111 123443 444444332211 11233467899
Q ss_pred CCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCC
Q 042374 216 GLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNP 255 (714)
Q Consensus 216 ~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 255 (714)
.+...+..++++.. |.........++ ..-+..+|+|.-
T Consensus 572 ap~~~~R~~IL~~~-~s~~~~~~~~~d-Ld~ls~~TEGy~ 609 (952)
T KOG0735|consen 572 APAVTRRKEILTTI-FSKNLSDITMDD-LDFLSVKTEGYL 609 (952)
T ss_pred CcchhHHHHHHHHH-HHhhhhhhhhHH-HHHHHHhcCCcc
Confidence 99999988888665 333332222222 223777888753
No 232
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.23 E-value=0.0018 Score=65.48 Aligned_cols=101 Identities=15% Similarity=0.137 Sum_probs=59.5
Q ss_pred HHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcc-cceEEeeechhcccccChHHHHHHHHHHHhCCCCCccc
Q 042374 68 EVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHF-QGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIG 146 (714)
Q Consensus 68 ~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (714)
++++.+..- +..+.+.|+|.+|+|||||++.+++.+.... +..+++..+ -.+...+.++.+.+...+... ..+..
T Consensus 122 RvID~l~Pi-GkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lI--gER~~EV~df~~~i~~~Vvas-t~de~ 197 (380)
T PRK12608 122 RVVDLVAPI-GKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLI--DERPEEVTDMRRSVKGEVYAS-TFDRP 197 (380)
T ss_pred hhhhheeec-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEe--cCCCCCHHHHHHHHhhhEEee-cCCCC
Confidence 355555432 2445679999999999999999999776543 332222222 234556677777776653322 21111
Q ss_pred chh------hHHHHHHHh--cCCcEEEEEeCCCC
Q 042374 147 TLV------IHQNIRKRL--RQVKMLIVLDAVHD 172 (714)
Q Consensus 147 ~~~------~~~~l~~~l--~~k~~LlVlDdv~~ 172 (714)
... ....+.+++ ++++++||+|++..
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 111 112223333 58899999999943
No 233
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.23 E-value=0.0008 Score=76.21 Aligned_cols=161 Identities=15% Similarity=0.190 Sum_probs=87.0
Q ss_pred CCCcccchhhHHHHHhhhcc----cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHH
Q 042374 56 LDGFVGLNSRIEEVKSLLCL----ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRD 131 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~----~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 131 (714)
....+|.++.++++.+++.. +.....++.++|++|+||||+|+.++......|-.+-+ ....+..++..
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~-------~~~~d~~~i~g 393 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMAL-------GGVRDEAEIRG 393 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEc-------CCCCCHHHhcc
Confidence 45589999999999887763 12245689999999999999999999876544422111 11111111100
Q ss_pred HHHHHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCCH-----HHHHHHhcCCCC---------------CCCCc
Q 042374 132 EVISQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDGF-----TQLESLAGELDK---------------FTTGS 191 (714)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----~~~~~l~~~l~~---------------~~~gs 191 (714)
. -....|... -...+.+.+. ....-++++|+++..- +..+.+...+.. .-...
T Consensus 394 ~-~~~~~g~~~-----G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 394 H-RRTYIGSMP-----GKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred c-hhccCCCCC-----cHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCce
Confidence 0 000011110 0011222221 1233478899996540 112344333221 01233
Q ss_pred EEEEEcCChhHHHh-cCCCeEEecCCCCHHHHHHHHHHhh
Q 042374 192 RIIITTRDKQVLDK-CGVNYVYEVEGLEHNKAFELFYRKA 230 (714)
Q Consensus 192 ~IliTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~ 230 (714)
-+|.|+....+... .....++++.+++.+|-.++..++.
T Consensus 467 ~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 467 MFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 34455554433222 2333578999999999999887775
No 234
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.22 E-value=0.014 Score=59.70 Aligned_cols=195 Identities=15% Similarity=0.106 Sum_probs=107.7
Q ss_pred chhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHH-HHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHH---
Q 042374 62 LNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIA-SAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQV--- 137 (714)
Q Consensus 62 r~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 137 (714)
|.+.+++|..||.... -..|.|.|+-|.||+.|+ .++..+ .+.+..++|-.-.. ..+-...++.++.++
T Consensus 1 R~e~~~~L~~wL~e~~--~TFIvV~GPrGSGK~elV~d~~L~~----r~~vL~IDC~~i~~-ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP--NTFIVVQGPRGSGKRELVMDHVLKD----RKNVLVIDCDQIVK-ARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCC--CeEEEEECCCCCCccHHHHHHHHhC----CCCEEEEEChHhhh-ccChHHHHHHHHHhcCCC
Confidence 5677889999996433 458999999999999998 555542 22245554322211 122222333333331
Q ss_pred --------------------hCCCC-CcccchhhH--------HHHHHH-------------------h---cCCcEEEE
Q 042374 138 --------------------LGDKN-LKIGTLVIH--------QNIRKR-------------------L---RQVKMLIV 166 (714)
Q Consensus 138 --------------------~~~~~-~~~~~~~~~--------~~l~~~-------------------l---~~k~~LlV 166 (714)
.|... .......+. .++++. + ..++-+||
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 22211 111111111 111110 0 01267899
Q ss_pred EeCCCCC-------H---HHHHHHhcCCCCCCCCcEEEEEcCChhHHH----hc--CCCeEEecCCCCHHHHHHHHHHhh
Q 042374 167 LDAVHDG-------F---TQLESLAGELDKFTTGSRIIITTRDKQVLD----KC--GVNYVYEVEGLEHNKAFELFYRKA 230 (714)
Q Consensus 167 lDdv~~~-------~---~~~~~l~~~l~~~~~gs~IliTtR~~~v~~----~~--~~~~~~~l~~L~~~~~~~l~~~~~ 230 (714)
+|++... + .+|...+. ..+-.+||++|-+..... .+ ...+.+.|...+++.|.++...+.
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L 229 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQL 229 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHh
Confidence 9998432 1 22333222 134457888887765443 32 334678999999999999999887
Q ss_pred hhcCCC--------------C----hhHHHHHHHHHHHhcCCChhhHHhhhhhcc
Q 042374 231 FRQNNY--------------P----PDFLGLSLEVVHYARNNPLALEVLGSSLYQ 267 (714)
Q Consensus 231 ~~~~~~--------------~----~~~~~~~~~i~~~~~g~Plai~~~~~~l~~ 267 (714)
...... . .....-....++..||=-.-++.+++.++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 230 DEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred cccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 433110 0 122334456677778877777777777763
No 235
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.20 E-value=2.7e-05 Score=64.91 Aligned_cols=105 Identities=23% Similarity=0.265 Sum_probs=58.3
Q ss_pred CCcEEecCCCCCCcccccc---ccCCCCCCEEEecCCCCCCCCchhhh-ccccccccccCCccccccCccccCCCCCccc
Q 042374 542 NLKVLSLSQCPRLKRISTS---ILKLKSLQNLYLIQCFDLENFPEILE-KMEYLNYNALGRTKIRELPSTFEKGEGTESQ 617 (714)
Q Consensus 542 ~L~~L~l~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 617 (714)
-+..++|++|++ ..++.. +.....|...++++|.+. .+|..|. +.+.+..|++.+|.|.++|.+
T Consensus 28 E~h~ldLssc~l-m~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE---------- 95 (177)
T KOG4579|consen 28 ELHFLDLSSCQL-MYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEE---------- 95 (177)
T ss_pred Hhhhcccccchh-hHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHH----------
Confidence 355667777754 233333 333445666677777644 3454443 345777778888877777765
Q ss_pred CCCccCCCCCCCceeccCCCcCc----CCCCCCCCEEECCCCCCcccch
Q 042374 618 LPSSVADTNDLEGLSLYLRNYAL----NGCLSSLEYLDLSGNDFESLPA 662 (714)
Q Consensus 618 l~~~~~~~~~L~~L~l~~~~~~~----~~~l~~L~~L~L~~n~l~~lp~ 662 (714)
+..++.|+.|++..|.+.. +.++.+|-.|+..+|.+..+|-
T Consensus 96 ----~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 96 ----LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred ----HhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence 5555556655555555433 2234445555555555444443
No 236
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0042 Score=65.98 Aligned_cols=171 Identities=18% Similarity=0.173 Sum_probs=94.2
Q ss_pred cccchhhHHHHHhhhcc-----------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChH
Q 042374 59 FVGLNSRIEEVKSLLCL-----------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAI 127 (714)
Q Consensus 59 ~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 127 (714)
+=|.|+.+.+|.+.+.- +-..++-|.++|++|.|||++|+.++++..-.|-.+ .
T Consensus 436 IGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv---k------------ 500 (693)
T KOG0730|consen 436 IGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV---K------------ 500 (693)
T ss_pred ccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec---c------------
Confidence 34477666677655432 124578899999999999999999999876665321 0
Q ss_pred HHHHHHHHHHhCCCCCcccchhhH-HHHHHHhcCCcEEEEEeCCCCC------------HHHHHHHhcCCCCCCCCcEEE
Q 042374 128 HVRDEVISQVLGDKNLKIGTLVIH-QNIRKRLRQVKMLIVLDAVHDG------------FTQLESLAGELDKFTTGSRII 194 (714)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~------------~~~~~~l~~~l~~~~~gs~Il 194 (714)
..+++..+.|.+. ..+ +...++=+--+.++.||+++.. ...+..|+..+........|+
T Consensus 501 --gpEL~sk~vGeSE------r~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ 572 (693)
T KOG0730|consen 501 --GPELFSKYVGESE------RAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVL 572 (693)
T ss_pred --CHHHHHHhcCchH------HHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEE
Confidence 1122222233221 011 1112222344688999988543 123445555555444333333
Q ss_pred E---EcCChhHHHh----cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCC
Q 042374 195 I---TTRDKQVLDK----CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNP 255 (714)
Q Consensus 195 i---TtR~~~v~~~----~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 255 (714)
| |-|...+-.. -+.++.+.++.-+.+-..++|+.++-.-.-.+ + -...++++++.|.-
T Consensus 573 ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~-~--vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 573 VIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSE-D--VDLEELAQATEGYS 637 (693)
T ss_pred EEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCc-c--ccHHHHHHHhccCC
Confidence 3 3344333222 23567788888888888899988873222111 1 12345555555554
No 237
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.16 E-value=4.3e-05 Score=63.73 Aligned_cols=77 Identities=19% Similarity=0.191 Sum_probs=39.6
Q ss_pred cccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc----CCCCCCCCEEECCCCCCcccchhhc
Q 042374 590 YLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL----NGCLSSLEYLDLSGNDFESLPASIK 665 (714)
Q Consensus 590 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~----~~~l~~L~~L~L~~n~l~~lp~~l~ 665 (714)
.|...++++|.++++|..+ ...++.++.|++.+|.+.+ +..++.|+.|+++.|.+...|..+.
T Consensus 54 el~~i~ls~N~fk~fp~kf-------------t~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~ 120 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKF-------------TIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIA 120 (177)
T ss_pred eEEEEecccchhhhCCHHH-------------hhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHH
Confidence 3444455555555555443 3334455555555555544 3445555555555555555555554
Q ss_pred cCCCCCeeccccCc
Q 042374 666 QLSRLRKLHLCYCD 679 (714)
Q Consensus 666 ~l~~L~~L~l~~~~ 679 (714)
.+.+|-+|+.-+|.
T Consensus 121 ~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 121 PLIKLDMLDSPENA 134 (177)
T ss_pred HHHhHHHhcCCCCc
Confidence 45555555554444
No 238
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.16 E-value=0.0014 Score=60.85 Aligned_cols=124 Identities=19% Similarity=0.242 Sum_probs=57.5
Q ss_pred chhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHH-H-hhcccceEEeeechhcccccC-----hH-------
Q 042374 62 LNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQ-I-SRHFQGKCFMANVREESNKMG-----AI------- 127 (714)
Q Consensus 62 r~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~-~-~~~f~~~~~~~~~~~~~~~~~-----~~------- 127 (714)
+..+-....+++. ...++.+.|++|.|||.||...+-+ + .++|+..+++...-...+.-. ..
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 3444444455553 3458999999999999999999864 3 456777777653321111100 00
Q ss_pred HHHHHHHHHHhCCCCCcccchhhHHHHH----------HHhcCC---cEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEE
Q 042374 128 HVRDEVISQVLGDKNLKIGTLVIHQNIR----------KRLRQV---KMLIVLDAVHDG-FTQLESLAGELDKFTTGSRI 193 (714)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------~~l~~k---~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~I 193 (714)
.-+.+.+..+++.. ..+.+. ..++++ .-++|+|++.+. ..++..+.. +.+.+|+|
T Consensus 81 ~p~~d~l~~~~~~~--------~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilT---R~g~~ski 149 (205)
T PF02562_consen 81 RPIYDALEELFGKE--------KLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILT---RIGEGSKI 149 (205)
T ss_dssp HHHHHHHTTTS-TT--------CHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHT---TB-TT-EE
T ss_pred HHHHHHHHHHhChH--------hHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHc---ccCCCcEE
Confidence 11111111111110 001111 122333 469999999876 345555544 46789999
Q ss_pred EEEcCCh
Q 042374 194 IITTRDK 200 (714)
Q Consensus 194 liTtR~~ 200 (714)
+++--..
T Consensus 150 i~~GD~~ 156 (205)
T PF02562_consen 150 IITGDPS 156 (205)
T ss_dssp EEEE---
T ss_pred EEecCce
Confidence 9987654
No 239
>PRK04132 replication factor C small subunit; Provisional
Probab=97.15 E-value=0.014 Score=65.95 Aligned_cols=153 Identities=14% Similarity=0.104 Sum_probs=92.3
Q ss_pred EEc--cCchhHHHHHHHHHHHHh-hccc-ceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHhcC
Q 042374 85 IWG--MGGIGKTTIASAVFHQIS-RHFQ-GKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRLRQ 160 (714)
Q Consensus 85 i~G--~~GiGKTtLa~~~~~~~~-~~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 160 (714)
+.| |.++||||+|..+++++- +.+. ..+-++ .+....+ +.+++++..+...... -..
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElN----ASd~rgi-d~IR~iIk~~a~~~~~--------------~~~ 629 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELN----ASDERGI-NVIREKVKEFARTKPI--------------GGA 629 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEe----CCCcccH-HHHHHHHHHHHhcCCc--------------CCC
Confidence 347 789999999999999762 2222 233333 2222222 3444444432211110 012
Q ss_pred CcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCChh-HHHh-cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCC
Q 042374 161 VKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDKQ-VLDK-CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYP 237 (714)
Q Consensus 161 k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~ 237 (714)
+.-++|+|+++.. ....+.|...+......+++|+++.+.. +... ......+++++++.++..+.+.+.+....-.-
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i 709 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL 709 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 4579999999876 3566777776665556667776665543 3222 23346899999999999988877654322111
Q ss_pred hhHHHHHHHHHHHhcCCChhh
Q 042374 238 PDFLGLSLEVVHYARNNPLAL 258 (714)
Q Consensus 238 ~~~~~~~~~i~~~~~g~Plai 258 (714)
+ .+....|++.++|.+-.+
T Consensus 710 ~--~e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 710 T--EEGLQAILYIAEGDMRRA 728 (846)
T ss_pred C--HHHHHHHHHHcCCCHHHH
Confidence 1 256789999999988544
No 240
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.13 E-value=0.004 Score=57.58 Aligned_cols=115 Identities=17% Similarity=0.265 Sum_probs=69.0
Q ss_pred CCcccchhhHHHHHhhhcc--cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHH
Q 042374 57 DGFVGLNSRIEEVKSLLCL--ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~--~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
..++|.|...+.|.+--.. .....--|.+||.-|+|||.|++++.+++.+..-.-+=|. ..++
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~-------k~dl-------- 124 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVD-------KEDL-------- 124 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEc-------HHHH--------
Confidence 3478998888887653321 2223446789999999999999999998877654422222 0111
Q ss_pred HHHhCCCCCcccchhhHHHHHHHh--cCCcEEEEEeCCC--CCHHHHHHHhcCCCCC---CCCcEEEEEcCCh
Q 042374 135 SQVLGDKNLKIGTLVIHQNIRKRL--RQVKMLIVLDAVH--DGFTQLESLAGELDKF---TTGSRIIITTRDK 200 (714)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~--~~~~~~~~l~~~l~~~---~~gs~IliTtR~~ 200 (714)
..+..+.+.| .++||+|..||.. ...+....+...+... .+...++..|.++
T Consensus 125 --------------~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 125 --------------ATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred --------------hhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 1113344444 4678999999983 2224455555554422 2344455555444
No 241
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0041 Score=64.12 Aligned_cols=49 Identities=24% Similarity=0.262 Sum_probs=34.5
Q ss_pred CCCcccchhhHHHHH---hhhcccC------C-CeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 56 LDGFVGLNSRIEEVK---SLLCLES------R-DVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~---~~l~~~~------~-~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
.+.+-|-|+.+++|+ ++|.... + =++-|.++|++|.|||-||++++-+.
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 455677776655554 4553211 1 25678999999999999999999764
No 242
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.023 Score=58.79 Aligned_cols=130 Identities=18% Similarity=0.171 Sum_probs=75.8
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhH-HHHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIH-QNIRK 156 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~ 156 (714)
.....+.+.|++|+|||+||..++.. ..|+.+-.+. .. .+.|... ....... ....+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS----pe--------------~miG~sE--saKc~~i~k~F~D 593 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS----PE--------------DMIGLSE--SAKCAHIKKIFED 593 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC----hH--------------HccCccH--HHHHHHHHHHHHH
Confidence 34667889999999999999999863 4566554443 11 1112110 0001111 23334
Q ss_pred HhcCCcEEEEEeCCCCC-----------HHHHHHHhcCC---CCCCCCcEEEEEcCChhHHHhcCC----CeEEecCCCC
Q 042374 157 RLRQVKMLIVLDAVHDG-----------FTQLESLAGEL---DKFTTGSRIIITTRDKQVLDKCGV----NYVYEVEGLE 218 (714)
Q Consensus 157 ~l~~k~~LlVlDdv~~~-----------~~~~~~l~~~l---~~~~~gs~IliTtR~~~v~~~~~~----~~~~~l~~L~ 218 (714)
.-+..=-.||+||+... -..++.|.-.+ |..++.--|+-||....+...|+. ...|.++.++
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 44556678999998543 01233333333 323333345567777788887754 3468899998
Q ss_pred H-HHHHHHHHHh
Q 042374 219 H-NKAFELFYRK 229 (714)
Q Consensus 219 ~-~~~~~l~~~~ 229 (714)
. ++..+.++..
T Consensus 674 ~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 674 TGEQLLEVLEEL 685 (744)
T ss_pred chHHHHHHHHHc
Confidence 7 6777776554
No 243
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.09 E-value=0.00058 Score=60.00 Aligned_cols=45 Identities=24% Similarity=0.267 Sum_probs=32.2
Q ss_pred ccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 60 VGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 60 vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
||....++++.+.+..-......|.|+|..|+||+++|+.++..-
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 577777777777665433344567899999999999999998743
No 244
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.09 E-value=0.0088 Score=53.03 Aligned_cols=119 Identities=14% Similarity=0.185 Sum_probs=62.6
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHH----hCCCC----Cc-ccc---h
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQV----LGDKN----LK-IGT---L 148 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----~~-~~~---~ 148 (714)
..|-|++-.|.||||+|...+-+...+=..+.++.-... .....-...++.+ ..+ .+... .+ ..+ .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg-~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKG-GWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCC-CCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 467788888999999999999876665444555432222 1122222333222 000 01100 00 000 0
Q ss_pred hhH-HHHHHHhc-CCcEEEEEeCCCCC----HHHHHHHhcCCCCCCCCcEEEEEcCChh
Q 042374 149 VIH-QNIRKRLR-QVKMLIVLDAVHDG----FTQLESLAGELDKFTTGSRIIITTRDKQ 201 (714)
Q Consensus 149 ~~~-~~l~~~l~-~k~~LlVlDdv~~~----~~~~~~l~~~l~~~~~gs~IliTtR~~~ 201 (714)
... +..++.+. ++-=|+|||++-.. ....+.+...+....++..||+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 111 33444443 45569999998322 1233444444444456778999999864
No 245
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.08 E-value=0.0013 Score=60.66 Aligned_cols=37 Identities=27% Similarity=0.530 Sum_probs=31.5
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
...+|.+.|++|+||||+|+.++.....++...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3568999999999999999999998887777766663
No 246
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.08 E-value=0.0046 Score=70.92 Aligned_cols=52 Identities=23% Similarity=0.425 Sum_probs=40.3
Q ss_pred CCcccchhhHHHHHhhhcc----cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcc
Q 042374 57 DGFVGLNSRIEEVKSLLCL----ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHF 108 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~----~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f 108 (714)
..++|.++.++++.+++.. ......++.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 4478999888888876542 222345899999999999999999999875544
No 247
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.08 E-value=0.0032 Score=57.68 Aligned_cols=130 Identities=15% Similarity=0.190 Sum_probs=63.9
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCC-Cc-------ccchhh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKN-LK-------IGTLVI 150 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~ 150 (714)
+..+++|+|+.|.|||||++.++.... .....+++.... .. ....... ++.+.-+..... .. .+.-+.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~-~~-~~~~~~~-~~~i~~~~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVD-LR-DLDLESL-RKNIAYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEE-hh-hcCHHHH-HhhEEEEcCCchhccchHHHHhhCHHHH
Confidence 456899999999999999999987433 223444443210 00 0000000 000000000000 00 111111
Q ss_pred H-HHHHHHhcCCcEEEEEeCCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCChhHHHhcCCCeEEec
Q 042374 151 H-QNIRKRLRQVKMLIVLDAVHDG--FTQLESLAGELDKFTTGSRIIITTRDKQVLDKCGVNYVYEV 214 (714)
Q Consensus 151 ~-~~l~~~l~~k~~LlVlDdv~~~--~~~~~~l~~~l~~~~~gs~IliTtR~~~v~~~~~~~~~~~l 214 (714)
. -.+...+..++-++++|+-... ....+.+...+.....+..||++|.+.+.... +++++.+
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1 3345566677889999997543 12222222222212234678888888776654 4455544
No 248
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.07 E-value=0.0018 Score=61.72 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=32.7
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
...+++.|+|++|+|||++|..++......-..++|+.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 45789999999999999999999987766667788887
No 249
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.06 E-value=0.0015 Score=63.29 Aligned_cols=92 Identities=15% Similarity=0.249 Sum_probs=56.4
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCC------CCCcccchh---
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGD------KNLKIGTLV--- 149 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--- 149 (714)
+.+.++|.|.+|+|||||++.+++.++.+|+..+++..+.+ +...+.++.+++...-.-. ...+.....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGe--r~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGE--RTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc--CcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 45678999999999999999999998888877776654422 2234444544444321000 001111111
Q ss_pred ---hHHHHHHHh--c-CCcEEEEEeCCCC
Q 042374 150 ---IHQNIRKRL--R-QVKMLIVLDAVHD 172 (714)
Q Consensus 150 ---~~~~l~~~l--~-~k~~LlVlDdv~~ 172 (714)
..-.+.+++ + ++.+|+++||+..
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 112344555 3 8899999999854
No 250
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.04 E-value=0.00062 Score=68.37 Aligned_cols=49 Identities=18% Similarity=0.317 Sum_probs=41.5
Q ss_pred CcccchhhHHHHHhhhccc----CCCeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 58 GFVGLNSRIEEVKSLLCLE----SRDVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 58 ~~vGr~~~~~~l~~~l~~~----~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
.++|.++.++++.+++... +...++++++|++|+||||||+.+++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7999999999999988642 234688999999999999999999987644
No 251
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.03 E-value=0.00059 Score=75.92 Aligned_cols=85 Identities=19% Similarity=0.127 Sum_probs=51.3
Q ss_pred cccccccceEecccccceE--eccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCC-CCchhhhcccc
Q 042374 514 PQISGSVTKLILWETAIKE--VPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLE-NFPEILEKMEY 590 (714)
Q Consensus 514 ~~~~~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~ 590 (714)
....|+|+.|.+.+-.+.. ...-..++++|..||++++.+... .+++.+++|+.|.+.+-.+.. .--..+-+|++
T Consensus 144 g~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~ 221 (699)
T KOG3665|consen 144 GTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKK 221 (699)
T ss_pred hhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccC
Confidence 3456677777777654432 223345677777888877654333 467777777777776644432 11134566777
Q ss_pred ccccccCCcc
Q 042374 591 LNYNALGRTK 600 (714)
Q Consensus 591 L~~L~l~~~~ 600 (714)
|+.||+|...
T Consensus 222 L~vLDIS~~~ 231 (699)
T KOG3665|consen 222 LRVLDISRDK 231 (699)
T ss_pred CCeeeccccc
Confidence 7777777643
No 252
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.02 E-value=0.0019 Score=60.68 Aligned_cols=112 Identities=16% Similarity=0.205 Sum_probs=62.0
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhH-HHHHHHhc
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIH-QNIRKRLR 159 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~ 159 (714)
..|.|+|+.|.||||++..+...+.......++...- ........ ...++.+ ...... .... +.++..+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~---~~E~~~~~-~~~~i~q----~~vg~~-~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIED---PIEFVHES-KRSLINQ----REVGLD-TLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC---CccccccC-ccceeee----cccCCC-ccCHHHHHHHHhc
Confidence 3689999999999999999888766544444443210 00000000 0001100 001111 1222 66777777
Q ss_pred CCcEEEEEeCCCCCHHHHHHHhcCCCCCCCCcEEEEEcCChhHHHh
Q 042374 160 QVKMLIVLDAVHDGFTQLESLAGELDKFTTGSRIIITTRDKQVLDK 205 (714)
Q Consensus 160 ~k~~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~v~~~ 205 (714)
..+=.+++|++.+. +.+...... ...|..++.|+....+...
T Consensus 73 ~~pd~ii~gEird~-e~~~~~l~~---a~~G~~v~~t~Ha~~~~~~ 114 (198)
T cd01131 73 QDPDVILVGEMRDL-ETIRLALTA---AETGHLVMSTLHTNSAAKT 114 (198)
T ss_pred CCcCEEEEcCCCCH-HHHHHHHHH---HHcCCEEEEEecCCcHHHH
Confidence 77889999999776 444443332 1345567778776655443
No 253
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.012 Score=64.63 Aligned_cols=179 Identities=16% Similarity=0.165 Sum_probs=102.8
Q ss_pred CCCCcccchhhHHHHHhhh---cc-------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhccccc
Q 042374 55 DLDGFVGLNSRIEEVKSLL---CL-------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKM 124 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l---~~-------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 124 (714)
....+.|-|+..++|++++ .. +..-++-+.++|++|.|||-||++++-+.. +-|+. ++.
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~s----vSG-- 377 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFS----VSG-- 377 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----Cceee----ech--
Confidence 3456888887776666554 22 122356788999999999999999997643 33333 111
Q ss_pred ChHHHHHHHHHHHhCCCCCcccchhhHHHHHH-HhcCCcEEEEEeCCCCC----------------HHHHHHHhcCCCCC
Q 042374 125 GAIHVRDEVISQVLGDKNLKIGTLVIHQNIRK-RLRQVKMLIVLDAVHDG----------------FTQLESLAGELDKF 187 (714)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~----------------~~~~~~l~~~l~~~ 187 (714)
.+..+...+... ...+.+.. .-...+.++.+|+++.. ...++.++..+..+
T Consensus 378 ------SEFvE~~~g~~a------srvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf 445 (774)
T KOG0731|consen 378 ------SEFVEMFVGVGA------SRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF 445 (774)
T ss_pred ------HHHHHHhcccch------HHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCC
Confidence 111111122211 01122222 22456788888887532 12245555555444
Q ss_pred CCCc-EEE-EEcCChhHH-----HhcCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhh
Q 042374 188 TTGS-RII-ITTRDKQVL-----DKCGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLAL 258 (714)
Q Consensus 188 ~~gs-~Il-iTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 258 (714)
.... .|+ -+|...++. +.-+.+..+.++.-+.....++|.-++...... .+..++.+ ++....|.+=|.
T Consensus 446 ~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 446 ETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 4333 333 344433332 223456778888889999999999987554443 33345555 888888888553
No 254
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.00 E-value=0.0017 Score=58.86 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=32.4
Q ss_pred cccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHH
Q 042374 59 FVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 59 ~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
+||.+..++++.+.+..-.....-|.|+|..|+||+.+|+.+.+.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888887776543223345679999999999999999983
No 255
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=4.2e-05 Score=71.61 Aligned_cols=86 Identities=28% Similarity=0.237 Sum_probs=44.2
Q ss_pred CCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCcCCC
Q 042374 564 LKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYALNGC 643 (714)
Q Consensus 564 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 643 (714)
+.+.+.|+.+||.+... ....+|+.|+.|.|+-|.|+.+.. +..|+.|+.|+|..|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p---------------l~rCtrLkElYLRkN------- 73 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP---------------LQRCTRLKELYLRKN------- 73 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh---------------HHHHHHHHHHHHHhc-------
Confidence 34455566666654331 334556666666666666654432 444555555555444
Q ss_pred CCCCCEEECCCCCCcccch--hhccCCCCCeeccccCccccccC
Q 042374 644 LSSLEYLDLSGNDFESLPA--SIKQLSRLRKLHLCYCDKLQSIP 685 (714)
Q Consensus 644 l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~l~~~~~~~~lp 685 (714)
.|.++.. -+.++|+|+.|.|..|+..+.-+
T Consensus 74 ------------~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 74 ------------CIESLDELEYLKNLPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred ------------ccccHHHHHHHhcCchhhhHhhccCCcccccc
Confidence 4444332 24555566666665555544333
No 256
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.96 E-value=0.0021 Score=59.93 Aligned_cols=36 Identities=17% Similarity=0.333 Sum_probs=27.3
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
++++.++|+.|+||||.+-+++.+.+.+-..+..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 368999999999999999999987665534455554
No 257
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00057 Score=72.71 Aligned_cols=159 Identities=18% Similarity=0.205 Sum_probs=90.1
Q ss_pred CCCCcccchhhHHHHHhhhcc----cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCL----ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVR 130 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~----~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 130 (714)
-....+|.++.++++.+++.. ++.+.++++.+|++|+|||.+|+.++..+..+|- ++-+- ...+..++...-
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf-RfSvG---G~tDvAeIkGHR 484 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF-RFSVG---GMTDVAEIKGHR 484 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE-EEecc---ccccHHhhcccc
Confidence 345678999999999998853 3456789999999999999999999997765553 22222 222222222222
Q ss_pred HHHHHHHhCCCCCcccchhhHHHHHHHh---cCCcEEEEEeCCCCC--------HHHHHHHh---------cCCCCC-CC
Q 042374 131 DEVISQVLGDKNLKIGTLVIHQNIRKRL---RQVKMLIVLDAVHDG--------FTQLESLA---------GELDKF-TT 189 (714)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~--------~~~~~~l~---------~~l~~~-~~ 189 (714)
+..+..+. .++.+.| +-..-|+.+|+|+.. -..+-+++ .+..+. --
T Consensus 485 RTYVGAMP-------------GkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~D 551 (906)
T KOG2004|consen 485 RTYVGAMP-------------GKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVD 551 (906)
T ss_pred eeeeccCC-------------hHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccc
Confidence 22221111 2233333 445668889998643 11122221 111111 11
Q ss_pred CcEEEE-EcCCh-h-H-HHhcCCCeEEecCCCCHHHHHHHHHHhh
Q 042374 190 GSRIII-TTRDK-Q-V-LDKCGVNYVYEVEGLEHNKAFELFYRKA 230 (714)
Q Consensus 190 gs~Ili-TtR~~-~-v-~~~~~~~~~~~l~~L~~~~~~~l~~~~~ 230 (714)
=|+|++ .|-+. + + ......-.++++.+...+|-..+-.++.
T Consensus 552 LSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 552 LSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred hhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 345553 33221 1 1 1122334689999999999888777765
No 258
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.95 E-value=0.00065 Score=58.20 Aligned_cols=23 Identities=30% Similarity=0.480 Sum_probs=21.3
Q ss_pred EEEEEccCchhHHHHHHHHHHHH
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
+|+|.|++|+||||+|+.++++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999865
No 259
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.011 Score=56.51 Aligned_cols=173 Identities=18% Similarity=0.171 Sum_probs=91.2
Q ss_pred CCcccchhhHHHHHhhhcc----------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccCh
Q 042374 57 DGFVGLNSRIEEVKSLLCL----------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGA 126 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 126 (714)
..+-|.|...+.|.+.+.. +...-+-|.++|++|.||+-||++|+.+...-| +. ++.
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTF-----FS----vSS---- 199 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTF-----FS----VSS---- 199 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCce-----EE----eeh----
Confidence 3467888888888776542 123357899999999999999999998765433 22 111
Q ss_pred HHHHHHHHHHHhCCCCCcccchhhHHHHHHHh-cCCcEEEEEeCCCCC--------HHH-----HHHHhcC--CCCCCCC
Q 042374 127 IHVRDEVISQVLGDKNLKIGTLVIHQNIRKRL-RQVKMLIVLDAVHDG--------FTQ-----LESLAGE--LDKFTTG 190 (714)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--------~~~-----~~~l~~~--l~~~~~g 190 (714)
.++.+.+.|.+ ...+..+.+.- .+|+-+|.+|+++.. .+. .+.|... ......|
T Consensus 200 ----SDLvSKWmGES------EkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~g 269 (439)
T KOG0739|consen 200 ----SDLVSKWMGES------EKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDG 269 (439)
T ss_pred ----HHHHHHHhccH------HHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCc
Confidence 12233333332 11113333333 478899999998542 111 1222222 1122235
Q ss_pred cEEEEEcCChhHHHhc---CCCeEEecCCCCHHHHH-HHHHHhhhhcCCCChhHHHHHHHHHHHhcCCC
Q 042374 191 SRIIITTRDKQVLDKC---GVNYVYEVEGLEHNKAF-ELFYRKAFRQNNYPPDFLGLSLEVVHYARNNP 255 (714)
Q Consensus 191 s~IliTtR~~~v~~~~---~~~~~~~l~~L~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 255 (714)
.-|+-.|..+-+.... +....+-+ +|.+..|+ .+|.-+.. . .+..-.+...+.+.++..|.-
T Consensus 270 vLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG-~-tp~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLG-D-TPHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred eEEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccC-C-CccccchhhHHHHHhhcCCCC
Confidence 5556566665444321 12223333 34444444 45555542 2 222222344566777777654
No 260
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.95 E-value=0.0024 Score=61.20 Aligned_cols=49 Identities=18% Similarity=0.244 Sum_probs=36.3
Q ss_pred HHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 67 EEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 67 ~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
..|.+++..+=....++.|.|.+|+||||+|.+++.....+-..++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3445555433345789999999999999999999987755545677775
No 261
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.93 E-value=0.0049 Score=54.50 Aligned_cols=105 Identities=18% Similarity=0.253 Sum_probs=57.1
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhH-HHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIH-QNIRKR 157 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~ 157 (714)
...+++|+|..|.|||||++.++.... .....+++.....+.-.+. .+.-+.. -.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~~~~-------------------lS~G~~~rv~lara 84 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGYFEQ-------------------LSGGEKMRLALAKL 84 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEEEcc-------------------CCHHHHHHHHHHHH
Confidence 456899999999999999999987432 2234444432100000000 1111111 334555
Q ss_pred hcCCcEEEEEeCCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCChhHHHh
Q 042374 158 LRQVKMLIVLDAVHDG--FTQLESLAGELDKFTTGSRIIITTRDKQVLDK 205 (714)
Q Consensus 158 l~~k~~LlVlDdv~~~--~~~~~~l~~~l~~~~~gs~IliTtR~~~v~~~ 205 (714)
+..++-++++|+.... ....+.+...+... +..|+++|.+.+....
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 6667779999997543 12222332222222 2468888877665543
No 262
>PRK04296 thymidine kinase; Provisional
Probab=96.90 E-value=0.0048 Score=57.45 Aligned_cols=111 Identities=16% Similarity=0.073 Sum_probs=60.1
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCc--ccchhhH-HHHHHH
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLK--IGTLVIH-QNIRKR 157 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~l~~~ 157 (714)
.++.|+|+.|.||||+|..++.+...+...++++. .......... .+..+ +|..... ....+.. +.+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k--~~~d~~~~~~----~i~~~-lg~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK--PAIDDRYGEG----KVVSR-IGLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe--ccccccccCC----cEecC-CCCcccceEeCChHHHHHHHHh-
Confidence 47789999999999999999998766544444442 1011111111 12222 1211111 1111122 33333
Q ss_pred hcCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCChh
Q 042374 158 LRQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDKQ 201 (714)
Q Consensus 158 l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~~ 201 (714)
..++.-+||+|++.-. .++...+...+ ...|..|++|.++..
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 2334568999999653 23344444433 245778999999843
No 263
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.86 E-value=0.0049 Score=55.94 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=27.5
Q ss_pred EEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
++.|+|.+|+||||++..++.....+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3679999999999999999987765545566665
No 264
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.86 E-value=0.018 Score=58.60 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=28.6
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
+.++|+++|++|+||||++..++.....+-..+.++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3579999999999999999999987655433444443
No 265
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.84 E-value=0.00079 Score=63.20 Aligned_cols=55 Identities=35% Similarity=0.576 Sum_probs=30.2
Q ss_pred CCCCCEEECCCCCCcc---cchhhccCCCCCeeccccCccccccC-------CCcCcccEeecccCc
Q 042374 644 LSSLEYLDLSGNDFES---LPASIKQLSRLRKLHLCYCDKLQSIP-------ELPLSLKWLDASNCE 700 (714)
Q Consensus 644 l~~L~~L~L~~n~l~~---lp~~l~~l~~L~~L~l~~~~~~~~lp-------~~~~~L~~L~l~~c~ 700 (714)
+|+|++|++++|+++. ++ -+..+++|..|++.+|+-.. +- .++++|+.|+-..+.
T Consensus 90 ~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred CCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccC
Confidence 4566666666665553 22 24556666677776666443 11 145666666655553
No 266
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.84 E-value=0.0057 Score=54.10 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=21.0
Q ss_pred EEEEEccCchhHHHHHHHHHHHHh
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999986543
No 267
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.84 E-value=0.0038 Score=60.73 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=33.4
Q ss_pred HHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhc------ccceEEee
Q 042374 69 VKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRH------FQGKCFMA 115 (714)
Q Consensus 69 l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~ 115 (714)
|.++|..+-....++.|+|.+|+|||+||..++...... -..++|+.
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 344443333456899999999999999999998543221 35788886
No 268
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.82 E-value=0.0069 Score=61.64 Aligned_cols=45 Identities=27% Similarity=0.210 Sum_probs=34.2
Q ss_pred cccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHH
Q 042374 59 FVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 59 ~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
+||....++++.+.+..-.....-|.|+|..|+||+++|+.+...
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 478887777777666543333446789999999999999999874
No 269
>PHA00729 NTP-binding motif containing protein
Probab=96.82 E-value=0.0071 Score=56.79 Aligned_cols=27 Identities=33% Similarity=0.331 Sum_probs=23.5
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
+...|.|.|.+|+||||||..+++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455789999999999999999998753
No 270
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.81 E-value=0.0072 Score=58.36 Aligned_cols=48 Identities=21% Similarity=0.168 Sum_probs=34.7
Q ss_pred HHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcc------cceEEee
Q 042374 68 EVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHF------QGKCFMA 115 (714)
Q Consensus 68 ~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~ 115 (714)
.|.++|..+-....++.|+|.+|+|||+||..++....... ..++|+.
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 34444433334567999999999999999999987654444 5667776
No 271
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.011 Score=64.61 Aligned_cols=171 Identities=20% Similarity=0.153 Sum_probs=93.8
Q ss_pred cccchhhHHHHHhhhcc-----------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChH
Q 042374 59 FVGLNSRIEEVKSLLCL-----------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAI 127 (714)
Q Consensus 59 ~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 127 (714)
+.|.+...+.+.+.+.. +-...+.+.++|++|.|||.||+.+++.....|-.+..-
T Consensus 244 iggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~------------- 310 (494)
T COG0464 244 IGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS------------- 310 (494)
T ss_pred hhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-------------
Confidence 45556555555544421 113456899999999999999999999766555322211
Q ss_pred HHHHHHHHHHhCCCCCcccchhhH-HHHHHHhcCCcEEEEEeCCCCC------------HHHHHHHhcCCCCCCC--CcE
Q 042374 128 HVRDEVISQVLGDKNLKIGTLVIH-QNIRKRLRQVKMLIVLDAVHDG------------FTQLESLAGELDKFTT--GSR 192 (714)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~------------~~~~~~l~~~l~~~~~--gs~ 192 (714)
.++....|.. .... +......+..+..|.+|+++.. ......++..+..... +..
T Consensus 311 ----~l~sk~vGes------ek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~ 380 (494)
T COG0464 311 ----ELLSKWVGES------EKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVL 380 (494)
T ss_pred ----HHhccccchH------HHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceE
Confidence 1111112211 1111 2233334578899999998532 1234455555443333 333
Q ss_pred EEEEcCChhHHH-h----cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcC
Q 042374 193 IIITTRDKQVLD-K----CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARN 253 (714)
Q Consensus 193 IliTtR~~~v~~-~----~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g 253 (714)
||-||-.+.... . .+....+.++.-+.++..+.|..+....... -...-....+++...|
T Consensus 381 vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~-~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 381 VIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPP-LAEDVDLEELAEITEG 445 (494)
T ss_pred EEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCc-chhhhhHHHHHHHhcC
Confidence 444444332222 1 1345688999999999999999887433322 0111234455555555
No 272
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.77 E-value=0.00052 Score=60.53 Aligned_cols=23 Identities=35% Similarity=0.405 Sum_probs=21.0
Q ss_pred EEEEccCchhHHHHHHHHHHHHh
Q 042374 83 VGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 83 v~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
|.|+|++|+|||+||+.+++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~ 24 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG 24 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 67999999999999999998773
No 273
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.77 E-value=0.046 Score=55.11 Aligned_cols=47 Identities=19% Similarity=-0.023 Sum_probs=32.7
Q ss_pred EEecCCCCHHHHHHHHHHhhhhcCCCC-hhHHHHHHHHHHHhcCCChh
Q 042374 211 VYEVEGLEHNKAFELFYRKAFRQNNYP-PDFLGLSLEVVHYARNNPLA 257 (714)
Q Consensus 211 ~~~l~~L~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~i~~~~~g~Pla 257 (714)
++++++++.+|+..++.......--.. ...+...+++....+|+|--
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~e 305 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRE 305 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHH
Confidence 789999999999999988764433222 22234556666667899864
No 274
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.09 Score=48.98 Aligned_cols=145 Identities=21% Similarity=0.343 Sum_probs=83.0
Q ss_pred ccchhhHHHHHhhhccc-----------CCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHH
Q 042374 60 VGLNSRIEEVKSLLCLE-----------SRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIH 128 (714)
Q Consensus 60 vGr~~~~~~l~~~l~~~-----------~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 128 (714)
=|.++.++++.+.+... -.+++-|.++|++|.|||-||+.++..- ..-|+. ++. .+
T Consensus 150 GgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~fir----vsg----se 216 (404)
T KOG0728|consen 150 GGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIR----VSG----SE 216 (404)
T ss_pred ccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEEE----ech----HH
Confidence 34677777777766431 1356778999999999999999998632 222333 221 22
Q ss_pred HHHHHHHHHhCCCCCcccchhhHHHHHHHh----cCCcEEEEEeCCCCC-----------HH----HHHHHhcCCCCCC-
Q 042374 129 VRDEVISQVLGDKNLKIGTLVIHQNIRKRL----RQVKMLIVLDAVHDG-----------FT----QLESLAGELDKFT- 188 (714)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~k~~LlVlDdv~~~-----------~~----~~~~l~~~l~~~~- 188 (714)
+.+..+ |... +.+++.+ ..-+-+|..|++++. .. ..-+++..+..+.
T Consensus 217 lvqk~i----gegs---------rmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 217 LVQKYI----GEGS---------RMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred HHHHHh----hhhH---------HHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc
Confidence 333332 2211 2333332 244678888988542 01 1223444444332
Q ss_pred -CCcEEEEEcCChhH-----HHhcCCCeEEecCCCCHHHHHHHHHHhh
Q 042374 189 -TGSRIIITTRDKQV-----LDKCGVNYVYEVEGLEHNKAFELFYRKA 230 (714)
Q Consensus 189 -~gs~IliTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~l~~~~~ 230 (714)
+.-+||..|.--++ .+..+.+..++.++-+.+...+++.-+.
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 45577766653332 2223456678888888888888886654
No 275
>PRK07261 topology modulation protein; Provisional
Probab=96.76 E-value=0.0064 Score=55.52 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.6
Q ss_pred EEEEEccCchhHHHHHHHHHHHH
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
.|.|+|++|+||||||+.+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998754
No 276
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.74 E-value=0.0057 Score=56.45 Aligned_cols=127 Identities=13% Similarity=0.128 Sum_probs=63.2
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechh-------------cccccChHHHHHHHHHHHhCCCCCcc
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVRE-------------ESNKMGAIHVRDEVISQVLGDKNLKI 145 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (714)
+..+++|.|..|.|||||++.++..... ....+++....- +.+...+.. ..+.+.+ ....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~--~tv~~~i----~~~L 99 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD--TTLRNNL----GRRF 99 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec--ccHHHhh----cccC
Confidence 4568999999999999999999874322 233344331100 000000000 0000000 0111
Q ss_pred cchhhH-HHHHHHhcCCcEEEEEeCCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCChhHHHhcCCCeEEec
Q 042374 146 GTLVIH-QNIRKRLRQVKMLIVLDAVHDG--FTQLESLAGELDKFTTGSRIIITTRDKQVLDKCGVNYVYEV 214 (714)
Q Consensus 146 ~~~~~~-~~l~~~l~~k~~LlVlDdv~~~--~~~~~~l~~~l~~~~~gs~IliTtR~~~v~~~~~~~~~~~l 214 (714)
+.-+.. -.+...+..++=++++|+.... ....+.+...+.....+..||++|.+.+.... .++.+.+
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 111122 3455566677889999998543 12222222222211235678888888876653 3455444
No 277
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.73 E-value=0.0043 Score=66.50 Aligned_cols=76 Identities=21% Similarity=0.318 Sum_probs=45.9
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKR 157 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (714)
++.++..++|++|+||||||.-++++.. | .++=+. .++......+-+.|...+......+.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG--Y-sVvEIN----ASDeRt~~~v~~kI~~avq~~s~l~a------------ 384 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG--Y-SVVEIN----ASDERTAPMVKEKIENAVQNHSVLDA------------ 384 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC--c-eEEEec----ccccccHHHHHHHHHHHHhhcccccc------------
Confidence 4578999999999999999999997642 1 122233 33333333333333333222211111
Q ss_pred hcCCcEEEEEeCCCCC
Q 042374 158 LRQVKMLIVLDAVHDG 173 (714)
Q Consensus 158 l~~k~~LlVlDdv~~~ 173 (714)
.+++.-+|+|+++..
T Consensus 385 -dsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 385 -DSRPVCLVIDEIDGA 399 (877)
T ss_pred -CCCcceEEEecccCC
Confidence 257888999999875
No 278
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.72 E-value=0.014 Score=53.58 Aligned_cols=122 Identities=16% Similarity=0.202 Sum_probs=60.8
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCC--Cc--------ccch
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKN--LK--------IGTL 148 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--------~~~~ 148 (714)
+..+++|+|..|.|||||++.++.... .....+++.... ... .. ....+. +.-+..... .. .+.-
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~-~~~-~~-~~~~~~-i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGKD-IKK-EP-EEVKRR-IGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE-ccc-ch-Hhhhcc-EEEEecCCccccCCcHHHHhhcCHH
Confidence 456899999999999999999986432 223444443210 000 00 000000 000000000 00 1111
Q ss_pred hhH-HHHHHHhcCCcEEEEEeCCCCC--HHHHHHHhcCCCCC-CCCcEEEEEcCChhHHHh
Q 042374 149 VIH-QNIRKRLRQVKMLIVLDAVHDG--FTQLESLAGELDKF-TTGSRIIITTRDKQVLDK 205 (714)
Q Consensus 149 ~~~-~~l~~~l~~k~~LlVlDdv~~~--~~~~~~l~~~l~~~-~~gs~IliTtR~~~v~~~ 205 (714)
+.. -.+...+..++=++++|+.... ......+...+... ..|..||++|.+......
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 111 3455667788889999997543 12222222222211 236678888888775553
No 279
>PRK06696 uridine kinase; Validated
Probab=96.72 E-value=0.0027 Score=60.94 Aligned_cols=46 Identities=24% Similarity=0.249 Sum_probs=35.9
Q ss_pred chhhHHHHHhhhcc-cCCCeEEEEEEccCchhHHHHHHHHHHHHhhc
Q 042374 62 LNSRIEEVKSLLCL-ESRDVRIVGIWGMGGIGKTTIASAVFHQISRH 107 (714)
Q Consensus 62 r~~~~~~l~~~l~~-~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~ 107 (714)
|++.+++|.+.+.. ..+...+|+|.|.+|+||||+|+.++..+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 55666777666653 34467899999999999999999999877654
No 280
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.71 E-value=0.007 Score=55.03 Aligned_cols=127 Identities=14% Similarity=0.075 Sum_probs=62.9
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeee---chhcccccCh--HHHHHHHHHHHhCCCCCcccchhhH-H
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMAN---VREESNKMGA--IHVRDEVISQVLGDKNLKIGTLVIH-Q 152 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~ 152 (714)
+..+++|+|..|.|||||++.++..... ....+++.. ...+.+...+ ..+.+.+.. . .....+.-+.. -
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~---~-~~~~LS~G~~~rv 100 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIY---P-WDDVLSGGEQQRL 100 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCCCccccccHHHHhhc---c-CCCCCCHHHHHHH
Confidence 4568999999999999999999874321 122222211 0001111111 122222211 0 11122222222 4
Q ss_pred HHHHHhcCCcEEEEEeCCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCChhHHHhcCCCeEEec
Q 042374 153 NIRKRLRQVKMLIVLDAVHDG--FTQLESLAGELDKFTTGSRIIITTRDKQVLDKCGVNYVYEV 214 (714)
Q Consensus 153 ~l~~~l~~k~~LlVlDdv~~~--~~~~~~l~~~l~~~~~gs~IliTtR~~~v~~~~~~~~~~~l 214 (714)
.+...+..++=++++|+-... ......+...+... +..||++|.+...... .++++.+
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~--~d~i~~l 160 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKF--HDRVLDL 160 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhh--CCEEEEE
Confidence 455666677788999987543 12222222222222 3567888877765442 4455544
No 281
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.012 Score=61.81 Aligned_cols=129 Identities=18% Similarity=0.202 Sum_probs=77.7
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHH-Hh
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRK-RL 158 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l 158 (714)
..-|.++|++|.|||-||++|+++..-.|-. |- --+++....|++. ..++.+.+ .-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFis---VK--------------GPELlNkYVGESE------rAVR~vFqRAR 601 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFIS---VK--------------GPELLNKYVGESE------RAVRQVFQRAR 601 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEe---ec--------------CHHHHHHHhhhHH------HHHHHHHHHhh
Confidence 4568899999999999999999987766521 11 1122222233221 11122222 23
Q ss_pred cCCcEEEEEeCCCCC------------HHHHHHHhcCCCCCC--CCcEEEEEc-CChhHHHh----cCCCeEEecCCCCH
Q 042374 159 RQVKMLIVLDAVHDG------------FTQLESLAGELDKFT--TGSRIIITT-RDKQVLDK----CGVNYVYEVEGLEH 219 (714)
Q Consensus 159 ~~k~~LlVlDdv~~~------------~~~~~~l~~~l~~~~--~gs~IliTt-R~~~v~~~----~~~~~~~~l~~L~~ 219 (714)
..-+++|.||+++.. ...++.|+..+.... .|.-||-.| |..-+-.. .+-+..+.++.-+.
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~ 681 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA 681 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCH
Confidence 467899999999643 123456666655432 355555444 44333222 23456777888889
Q ss_pred HHHHHHHHHhhh
Q 042374 220 NKAFELFYRKAF 231 (714)
Q Consensus 220 ~~~~~l~~~~~~ 231 (714)
+|..++++..+-
T Consensus 682 ~eR~~ILK~~tk 693 (802)
T KOG0733|consen 682 EERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHHhc
Confidence 999999988874
No 282
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.71 E-value=0.0019 Score=55.84 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=28.2
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhc-ccc-eEEee
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRH-FQG-KCFMA 115 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~-f~~-~~~~~ 115 (714)
...|+|.|++|+||||+++++++.+++. |.. .+|..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~ 42 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITP 42 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEee
Confidence 3468999999999999999999987765 543 44443
No 283
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.70 E-value=0.0099 Score=57.67 Aligned_cols=49 Identities=16% Similarity=0.095 Sum_probs=34.8
Q ss_pred HHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 67 EEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 67 ~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
..|.++|..+=....++.|+|.+|+|||++|.+++.....+=..++|+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 3444555444345779999999999999999999765433445677765
No 284
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.68 E-value=0.013 Score=54.16 Aligned_cols=122 Identities=16% Similarity=0.216 Sum_probs=63.6
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChH------HHHHHHHHHHhCCC------CCccc
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAI------HVRDEVISQVLGDK------NLKIG 146 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~------~~~~~ 146 (714)
+..+++|+|..|.|||||++.++.... .....+++.... .. ..... ....++++. ++.. ....+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~-~~-~~~~~~~~~~i~~~~q~l~~-~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKD-LA-SLSPKELARKIAYVPQALEL-LGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEE-CC-cCCHHHHHHHHhHHHHHHHH-cCCHhHhcCCcccCC
Confidence 456899999999999999999987432 234445543211 11 01111 111112222 2221 11111
Q ss_pred chhhH-HHHHHHhcCCcEEEEEeCCCCC--HHHHHHHhcCCCCC-CC-CcEEEEEcCChhHHH
Q 042374 147 TLVIH-QNIRKRLRQVKMLIVLDAVHDG--FTQLESLAGELDKF-TT-GSRIIITTRDKQVLD 204 (714)
Q Consensus 147 ~~~~~-~~l~~~l~~k~~LlVlDdv~~~--~~~~~~l~~~l~~~-~~-gs~IliTtR~~~v~~ 204 (714)
.-+.. -.+...+...+-++++|+.... ....+.+...+... .. +..||++|.+.....
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 11222 3455666778889999997543 12223333322221 22 567888888776543
No 285
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.68 E-value=0.0099 Score=66.47 Aligned_cols=128 Identities=19% Similarity=0.168 Sum_probs=71.5
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhH-HHHHHHhc
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIH-QNIRKRLR 159 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~ 159 (714)
+-|.++|++|.|||++|+.++.+....| +.+. .+ ... ....+.. .... +.+...-.
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is----~~------~~~----~~~~g~~------~~~~~~~f~~a~~ 242 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS----GS------DFV----EMFVGVG------ASRVRDMFEQAKK 242 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe----hH------HhH----Hhhhccc------HHHHHHHHHHHHh
Confidence 4589999999999999999998765443 1121 00 000 1111111 0111 22223334
Q ss_pred CCcEEEEEeCCCCC---------------HHHHHHHhcCCCCCC--CCcEEEEEcCChhHHHh-----cCCCeEEecCCC
Q 042374 160 QVKMLIVLDAVHDG---------------FTQLESLAGELDKFT--TGSRIIITTRDKQVLDK-----CGVNYVYEVEGL 217 (714)
Q Consensus 160 ~k~~LlVlDdv~~~---------------~~~~~~l~~~l~~~~--~gs~IliTtR~~~v~~~-----~~~~~~~~l~~L 217 (714)
..+.+|++|+++.. ...+..+...+.... .+.-||.||...+.... -+....+.++..
T Consensus 243 ~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~P 322 (644)
T PRK10733 243 AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP 322 (644)
T ss_pred cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCC
Confidence 56789999998542 012233333333222 24445556665543221 134567889988
Q ss_pred CHHHHHHHHHHhhh
Q 042374 218 EHNKAFELFYRKAF 231 (714)
Q Consensus 218 ~~~~~~~l~~~~~~ 231 (714)
+.++..+++..+..
T Consensus 323 d~~~R~~Il~~~~~ 336 (644)
T PRK10733 323 DVRGREQILKVHMR 336 (644)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999887753
No 286
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.65 E-value=0.012 Score=64.90 Aligned_cols=50 Identities=26% Similarity=0.329 Sum_probs=39.9
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
....++|.+..++++.+.+..-......|.|+|..|+|||++|+.+...-
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 45679999999999888775433334467899999999999999999753
No 287
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.62 E-value=0.002 Score=68.18 Aligned_cols=50 Identities=24% Similarity=0.353 Sum_probs=41.7
Q ss_pred CCcccchhhHHHHHhhhc----ccCCCeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 57 DGFVGLNSRIEEVKSLLC----LESRDVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~----~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
..++|.++.++++.+.+. .-..+.+++.++|++|+|||+||+.+++-+..
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 457999999999999883 22345679999999999999999999986654
No 288
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.62 E-value=0.0094 Score=61.40 Aligned_cols=50 Identities=24% Similarity=0.251 Sum_probs=36.0
Q ss_pred HHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 66 IEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 66 ~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
+.++.++|..+-....++.|.|.+|+|||||+..++......-..++|+.
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34455555333334679999999999999999999987665545667765
No 289
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.078 Score=49.71 Aligned_cols=163 Identities=19% Similarity=0.289 Sum_probs=88.8
Q ss_pred CCCCcccchhhHHHHHhhhccc-----------CCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccc
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLE-----------SRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNK 123 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~-----------~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 123 (714)
....+=|.++.+++|.+.+-.. -..++-|..+|++|.|||-+|++.+.+...-|-
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFL-------------- 234 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFL-------------- 234 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHH--------------
Confidence 3456778999999998876421 134667889999999999999999876443321
Q ss_pred cChHHHHH-HHHHHHhCCCCCcccchhhHHHHHHHh----cCCcEEEEEeCCCCC------------HH---HHHHHhcC
Q 042374 124 MGAIHVRD-EVISQVLGDKNLKIGTLVIHQNIRKRL----RQVKMLIVLDAVHDG------------FT---QLESLAGE 183 (714)
Q Consensus 124 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~k~~LlVlDdv~~~------------~~---~~~~l~~~ 183 (714)
++.. |+.+...|.. . ..+++.+ ...+.+|.+|+++.. ++ ..-+++..
T Consensus 235 ----KLAgPQLVQMfIGdG------A---kLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQ 301 (424)
T KOG0652|consen 235 ----KLAGPQLVQMFIGDG------A---KLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ 301 (424)
T ss_pred ----HhcchHHHhhhhcch------H---HHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHh
Confidence 1111 1222222221 1 1222221 345788889987431 11 12244455
Q ss_pred CCCCCC--CcEEEEEcCChh-----HHHhcCCCeEEecCCCCHHHHHHHHHHhhhh-cCCCChhHHHHH
Q 042374 184 LDKFTT--GSRIIITTRDKQ-----VLDKCGVNYVYEVEGLEHNKAFELFYRKAFR-QNNYPPDFLGLS 244 (714)
Q Consensus 184 l~~~~~--gs~IliTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~-~~~~~~~~~~~~ 244 (714)
+..+.+ ..+||..|.-.+ +.+..+-...++++--+++....+++-+... ...++..+++++
T Consensus 302 LDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELa 370 (424)
T KOG0652|consen 302 LDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELA 370 (424)
T ss_pred hcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHh
Confidence 554444 446666554332 3333344556777655655555666555432 123344455444
No 290
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.60 E-value=0.0093 Score=56.95 Aligned_cols=124 Identities=19% Similarity=0.199 Sum_probs=71.2
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeech--hcccccChHHHHHHHHHHHhCCCC-------Ccccchh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVR--EESNKMGAIHVRDEVISQVLGDKN-------LKIGTLV 149 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 149 (714)
+..+++|+|.+|.||||+++.+..-...- ...+++.... ..+ .....+.+.+++.. .|... -+....+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~~-~~~~~~~v~elL~~-Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKLS-KEERRERVLELLEK-VGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhcc-hhHHHHHHHHHHHH-hCCCHHHhhcCCcccCchh
Confidence 45689999999999999999998743322 2333433110 011 12233344455544 22211 1111122
Q ss_pred hH-HHHHHHhcCCcEEEEEeCCCCC-----HHHHHHHhcCCCCCCCCcEEEEEcCChhHHHhc
Q 042374 150 IH-QNIRKRLRQVKMLIVLDAVHDG-----FTQLESLAGELDKFTTGSRIIITTRDKQVLDKC 206 (714)
Q Consensus 150 ~~-~~l~~~l~~k~~LlVlDdv~~~-----~~~~~~l~~~l~~~~~gs~IliTtR~~~v~~~~ 206 (714)
.. -.+.+.+.-++-++|.|+..+. ..+.-.+...+. ...|-..++.|.+-.+++.+
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhh
Confidence 22 4567788899999999997543 233333333332 23466788888888887775
No 291
>PRK06762 hypothetical protein; Provisional
Probab=96.60 E-value=0.046 Score=49.75 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=22.5
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
..+|.|.|++|+||||+|+.+++..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999876
No 292
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.60 E-value=0.026 Score=50.16 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.5
Q ss_pred EEEEEccCchhHHHHHHHHHHHHh
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
+|.|+|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998764
No 293
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.58 E-value=0.016 Score=63.13 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=41.2
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
....++|+...++++.+.+..-......|.|+|..|+|||++|+.+...-
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 45679999999999888776544445578899999999999999999854
No 294
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.58 E-value=0.013 Score=58.19 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=28.0
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhc-c-cceEEee
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRH-F-QGKCFMA 115 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~-f-~~~~~~~ 115 (714)
..++++++|++|+||||++..++.....+ - ..+..+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 35799999999999999999999876543 1 3344443
No 295
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.58 E-value=0.016 Score=53.00 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.0
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+..+++|+|+.|.|||||.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 456899999999999999998863
No 296
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.58 E-value=0.023 Score=53.34 Aligned_cols=62 Identities=19% Similarity=0.234 Sum_probs=38.6
Q ss_pred HHHHHHhcCCcEEEEEeCCCCC--HHHHHHHhcCCCC--CCCCcEEEEEcCChhHHHhcCCCeEEecC
Q 042374 152 QNIRKRLRQVKMLIVLDAVHDG--FTQLESLAGELDK--FTTGSRIIITTRDKQVLDKCGVNYVYEVE 215 (714)
Q Consensus 152 ~~l~~~l~~k~~LlVlDdv~~~--~~~~~~l~~~l~~--~~~gs~IliTtR~~~v~~~~~~~~~~~l~ 215 (714)
-++.+.+...+-+|+-|+-... ...-+.+...+.. ...|..||+.|.+..+|..+ ++++.+.
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~--dr~i~l~ 216 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA--DRVIELK 216 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC--CEEEEEe
Confidence 5677888888999999985321 0111222222221 23477899999999999864 4455443
No 297
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.57 E-value=0.014 Score=53.37 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=60.4
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeec--hhcccccChHHHHHHHHHHHhCCCCCcccchhhH-HHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANV--REESNKMGAIHVRDEVISQVLGDKNLKIGTLVIH-QNIR 155 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 155 (714)
+..+++|+|+.|.|||||++.++.-.. .....+++... ....+... .+.-+.. -.+.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~q~~~-------------------LSgGq~qrv~la 83 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEWDGITPVYKPQYID-------------------LSGGELQRVAIA 83 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEECCEEEEEEcccCC-------------------CCHHHHHHHHHH
Confidence 355899999999999999999986432 22333443211 00011000 1111111 3455
Q ss_pred HHhcCCcEEEEEeCCCCC--HHHHHHHhcCCCCC-CC-CcEEEEEcCChhHHHhcCCCeEEecC
Q 042374 156 KRLRQVKMLIVLDAVHDG--FTQLESLAGELDKF-TT-GSRIIITTRDKQVLDKCGVNYVYEVE 215 (714)
Q Consensus 156 ~~l~~k~~LlVlDdv~~~--~~~~~~l~~~l~~~-~~-gs~IliTtR~~~v~~~~~~~~~~~l~ 215 (714)
..+..++-++++|+-... ....+.+...+... .. +..||++|.+....... ..+++.+.
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~-~d~i~~l~ 146 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYL-SDRIHVFE 146 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHh-CCEEEEEc
Confidence 566677889999997543 12222222222111 12 25677788777655432 23444444
No 298
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.57 E-value=0.0049 Score=57.09 Aligned_cols=30 Identities=40% Similarity=0.539 Sum_probs=26.5
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHHhhc
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQISRH 107 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~ 107 (714)
.++-+|+|.|.+|.||||+|++++..+..+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 346799999999999999999999988765
No 299
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.57 E-value=0.00073 Score=63.40 Aligned_cols=40 Identities=28% Similarity=0.223 Sum_probs=17.3
Q ss_pred CCCCCCEEEecCC--CCCCCCchhhhccccccccccCCcccc
Q 042374 563 KLKSLQNLYLIQC--FDLENFPEILEKMEYLNYNALGRTKIR 602 (714)
Q Consensus 563 ~l~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~~~~l~ 602 (714)
.+++|+.|.++.| +....++....++++|++|++++|.|+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3444444444444 222333333333445555555554443
No 300
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.55 E-value=0.013 Score=57.43 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=22.0
Q ss_pred EEEEccCchhHHHHHHHHHHHHhhc
Q 042374 83 VGIWGMGGIGKTTIASAVFHQISRH 107 (714)
Q Consensus 83 v~i~G~~GiGKTtLa~~~~~~~~~~ 107 (714)
|.+.|++|+||||+|+.++......
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 6899999999999999999876543
No 301
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.53 E-value=0.011 Score=60.31 Aligned_cols=37 Identities=19% Similarity=0.330 Sum_probs=28.1
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcc--cceEEee
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHF--QGKCFMA 115 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~ 115 (714)
+..+++++|+.|+||||++.+++.+...++ ..+.++.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 357999999999999999999998754443 3344443
No 302
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.52 E-value=0.019 Score=51.91 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=26.2
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhhcccceEE
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISRHFQGKCF 113 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 113 (714)
+.|.+.|.+|+||||+|+++++.++++-..++-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~ 34 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIH 34 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccc
Confidence 357789999999999999999987765444443
No 303
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.51 E-value=0.0078 Score=54.54 Aligned_cols=118 Identities=14% Similarity=0.167 Sum_probs=61.1
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhH-HHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIH-QNIRKR 157 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~ 157 (714)
+..+++|.|..|.|||||.+.++.... .....+++.... .. .....+..+ ...+.. .+.+.-+.. -.+...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~-~~-~~~~~~~~~----~~i~~~-~qLS~G~~qrl~lara 96 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKE-VS-FASPRDARR----AGIAMV-YQLSVGERQMVEIARA 96 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE-CC-cCCHHHHHh----cCeEEE-EecCHHHHHHHHHHHH
Confidence 456899999999999999999986432 234455554211 11 011111111 001110 001111222 345556
Q ss_pred hcCCcEEEEEeCCCCC--HHHHHHHhcCCCCC-CCCcEEEEEcCChhHHH
Q 042374 158 LRQVKMLIVLDAVHDG--FTQLESLAGELDKF-TTGSRIIITTRDKQVLD 204 (714)
Q Consensus 158 l~~k~~LlVlDdv~~~--~~~~~~l~~~l~~~-~~gs~IliTtR~~~v~~ 204 (714)
+..++-++++|+.... ......+...+... ..|..||++|.+.....
T Consensus 97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 97 LARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 6677889999997543 12222232222211 23667888888876443
No 304
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.00018 Score=67.49 Aligned_cols=97 Identities=22% Similarity=0.058 Sum_probs=69.7
Q ss_pred CCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccC
Q 042374 539 CLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQL 618 (714)
Q Consensus 539 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l 618 (714)
.+.+.+.|+..+|.+... ..+.+++.|+.|.|+-|.+... ..+..|++|+.|.|..|.|.++..-..
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~Y--------- 83 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEY--------- 83 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHH---------
Confidence 466788899999876433 2456899999999999886543 458899999999999999887654321
Q ss_pred CCccCCCCCCCceeccCCCcCc----------CCCCCCCCEEE
Q 042374 619 PSSVADTNDLEGLSLYLRNYAL----------NGCLSSLEYLD 651 (714)
Q Consensus 619 ~~~~~~~~~L~~L~l~~~~~~~----------~~~l~~L~~L~ 651 (714)
+.++++|+.|-|..|.-.. +..+|+|++||
T Consensus 84 ---LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 84 ---LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ---HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 6677777777777665333 33456666655
No 305
>PRK07667 uridine kinase; Provisional
Probab=96.48 E-value=0.0057 Score=57.15 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=31.9
Q ss_pred HHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhc
Q 042374 66 IEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRH 107 (714)
Q Consensus 66 ~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~ 107 (714)
.+++.+.+....+...+|+|.|.+|+||||+|+.+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 344555554444556899999999999999999999877543
No 306
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.48 E-value=0.02 Score=65.00 Aligned_cols=50 Identities=22% Similarity=0.278 Sum_probs=38.9
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
....++|+...++.+.+.+..-......|.|+|..|+|||++|+.+...-
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 34579999999888876665323334468899999999999999998753
No 307
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.019 Score=53.86 Aligned_cols=29 Identities=31% Similarity=0.318 Sum_probs=24.9
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
+..+-|.++|++|.|||-+|++++++...
T Consensus 209 dppkgvllygppgtgktl~aravanrtda 237 (435)
T KOG0729|consen 209 DPPKGVLLYGPPGTGKTLCARAVANRTDA 237 (435)
T ss_pred CCCCceEEeCCCCCchhHHHHHHhcccCc
Confidence 45678899999999999999999987543
No 308
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.45 E-value=0.03 Score=52.83 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.2
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
.+..+++|+|..|.|||||++.++...
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 345699999999999999999998754
No 309
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.036 Score=51.62 Aligned_cols=52 Identities=29% Similarity=0.388 Sum_probs=38.2
Q ss_pred CCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcc
Q 042374 57 DGFVGLNSRIEEVKSLLCL-----------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHF 108 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f 108 (714)
..+=|.+-..+++.+.... +-+.++-|.++|++|.|||.||+++++.....|
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 3456677777777776642 124567889999999999999999998654443
No 310
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.43 E-value=0.039 Score=57.04 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.7
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
..++|.++|+.|+||||.+.+++....
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999998654
No 311
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.43 E-value=0.017 Score=54.03 Aligned_cols=25 Identities=32% Similarity=0.427 Sum_probs=22.1
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
.+..+++|+|.+|.|||||++.++-
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 3456899999999999999999985
No 312
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.42 E-value=0.011 Score=57.99 Aligned_cols=53 Identities=25% Similarity=0.285 Sum_probs=43.8
Q ss_pred CCCCcccchhhHHH---HHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhc
Q 042374 55 DLDGFVGLNSRIEE---VKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRH 107 (714)
Q Consensus 55 ~~~~~vGr~~~~~~---l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~ 107 (714)
..+.+||..+..+. +.+++..+.-..+.|.++|++|.|||+||..+++++.+.
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~d 92 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGED 92 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 56789998877665 677776665567899999999999999999999988654
No 313
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.40 E-value=0.0098 Score=59.48 Aligned_cols=49 Identities=22% Similarity=0.207 Sum_probs=36.2
Q ss_pred HHHHhhhc-ccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 67 EEVKSLLC-LESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 67 ~~l~~~l~-~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
..|..+|- .+=...+++.|+|++|+||||||..++......-..++|+.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 34445553 33345679999999999999999999887666556677775
No 314
>PRK09354 recA recombinase A; Provisional
Probab=96.40 E-value=0.01 Score=59.84 Aligned_cols=50 Identities=24% Similarity=0.193 Sum_probs=38.0
Q ss_pred HHHHHhhhc-ccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 66 IEEVKSLLC-LESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 66 ~~~l~~~l~-~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
...|..+|. .+=...+++-|+|++|+||||||..++......-..++|+.
T Consensus 45 i~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 45 SLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred cHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 344555554 33345779999999999999999999987766666778886
No 315
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.39 E-value=0.003 Score=52.98 Aligned_cols=29 Identities=34% Similarity=0.493 Sum_probs=21.0
Q ss_pred EEEEccCchhHHHHHHHHHHHHhhcccce
Q 042374 83 VGIWGMGGIGKTTIASAVFHQISRHFQGK 111 (714)
Q Consensus 83 v~i~G~~GiGKTtLa~~~~~~~~~~f~~~ 111 (714)
|.|+|.+|+|||++|+.++..+...|..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 67999999999999999999888777643
No 316
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.38 E-value=0.015 Score=53.40 Aligned_cols=128 Identities=16% Similarity=0.226 Sum_probs=63.4
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCC-Cc-------ccchhh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKN-LK-------IGTLVI 150 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~ 150 (714)
+..+++|+|..|.|||||++.++.... .....+++.... .. ........+.+ .-...... .. .+.-+.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~-~~-~~~~~~~~~~i-~~~~q~~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGAD-IS-QWDPNELGDHV-GYLPQDDELFSGSIAENILSGGQR 102 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCEE-cc-cCCHHHHHhhe-EEECCCCccccCcHHHHCcCHHHH
Confidence 456899999999999999999987432 223444443110 00 00111111110 00000000 00 111111
Q ss_pred H-HHHHHHhcCCcEEEEEeCCCCC-----HHHHHHHhcCCCCCCCCcEEEEEcCChhHHHhcCCCeEEec
Q 042374 151 H-QNIRKRLRQVKMLIVLDAVHDG-----FTQLESLAGELDKFTTGSRIIITTRDKQVLDKCGVNYVYEV 214 (714)
Q Consensus 151 ~-~~l~~~l~~k~~LlVlDdv~~~-----~~~~~~l~~~l~~~~~gs~IliTtR~~~v~~~~~~~~~~~l 214 (714)
. -.+...+..++=++++|+.... ...+..+...+. ..|..||++|.+...... .++++.+
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~--~d~v~~l 168 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLAS--ADRILVL 168 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 1 3455556677779999997543 122222322222 236678888888776543 4455544
No 317
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.38 E-value=0.013 Score=57.88 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=21.6
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
++...|.+.|.+|.|||.||.+..-
T Consensus 243 ~dI~lV~L~G~AGtGKTlLALaAgl 267 (436)
T COG1875 243 DDIDLVSLGGKAGTGKTLLALAAGL 267 (436)
T ss_pred CCCCeEEeeccCCccHhHHHHHHHH
Confidence 4678999999999999999887764
No 318
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.37 E-value=0.015 Score=57.01 Aligned_cols=120 Identities=17% Similarity=0.113 Sum_probs=63.9
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCC-Cccc---chhhHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKN-LKIG---TLVIHQNI 154 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~l 154 (714)
+.+.++|+|+.|.|||||.+.++..+... ...+++... .+.......++... ...+....- ...+ .......+
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~-~v~~~d~~~ei~~~-~~~~~q~~~~~r~~v~~~~~k~~~~ 186 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGK-KVGIVDERSEIAGC-VNGVPQHDVGIRTDVLDGCPKAEGM 186 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCE-EeecchhHHHHHHH-hcccccccccccccccccchHHHHH
Confidence 45789999999999999999999765432 333444211 11100111222211 111111100 0001 11111223
Q ss_pred HHHh-cCCcEEEEEeCCCCCHHHHHHHhcCCCCCCCCcEEEEEcCChhHHHh
Q 042374 155 RKRL-RQVKMLIVLDAVHDGFTQLESLAGELDKFTTGSRIIITTRDKQVLDK 205 (714)
Q Consensus 155 ~~~l-~~k~~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~v~~~ 205 (714)
...+ ...+-++++|++... +.+..+...+ ..|..||+||.+..+...
T Consensus 187 ~~~i~~~~P~villDE~~~~-e~~~~l~~~~---~~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 187 MMLIRSMSPDVIVVDEIGRE-EDVEALLEAL---HAGVSIIATAHGRDVEDL 234 (270)
T ss_pred HHHHHhCCCCEEEEeCCCcH-HHHHHHHHHH---hCCCEEEEEechhHHHHH
Confidence 3333 357889999999765 5566555544 247789999997766443
No 319
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.36 E-value=0.011 Score=59.07 Aligned_cols=49 Identities=22% Similarity=0.199 Sum_probs=36.7
Q ss_pred HHHHhhhc-ccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 67 EEVKSLLC-LESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 67 ~~l~~~l~-~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
..|..+|- .+=+..+++-|+|++|+||||||..++......-..++|+.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 34445553 23345678999999999999999999987766666778876
No 320
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.023 Score=57.21 Aligned_cols=99 Identities=19% Similarity=0.211 Sum_probs=58.1
Q ss_pred HHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcc
Q 042374 66 IEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKI 145 (714)
Q Consensus 66 ~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (714)
+.++.+.|-.+--...+|.|-|-+|||||||..+++.++..+- .+.||. ......++... +.. ++....+.
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs------GEES~~QiklR-A~R-L~~~~~~l 149 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS------GEESLQQIKLR-ADR-LGLPTNNL 149 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe------CCcCHHHHHHH-HHH-hCCCccce
Confidence 4455555532222457899999999999999999999988766 677775 23333322211 112 33211111
Q ss_pred --cchhhHHHHHHHh-cCCcEEEEEeCCCCC
Q 042374 146 --GTLVIHQNIRKRL-RQVKMLIVLDAVHDG 173 (714)
Q Consensus 146 --~~~~~~~~l~~~l-~~k~~LlVlDdv~~~ 173 (714)
-.....+.+.+.+ +.++-++|+|-+...
T Consensus 150 ~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~ 180 (456)
T COG1066 150 YLLAETNLEDIIAELEQEKPDLVVIDSIQTL 180 (456)
T ss_pred EEehhcCHHHHHHHHHhcCCCEEEEecccee
Confidence 1111225555555 467789999998554
No 321
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.068 Score=57.52 Aligned_cols=175 Identities=15% Similarity=0.087 Sum_probs=95.5
Q ss_pred CCcccchhhHHHHHhhhcccC--------C---CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccC
Q 042374 57 DGFVGLNSRIEEVKSLLCLES--------R---DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMG 125 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~~~--------~---~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 125 (714)
..+=|..+.++.+++.+.-.. . -..-|.++|++|.|||-||.+++....-+| +.. -
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~f-----isv----K---- 733 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRF-----ISV----K---- 733 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeE-----EEe----c----
Confidence 445666677777777664321 1 134588999999999999999987543322 221 0
Q ss_pred hHHHHHHHHHHHhCCCCCcccchhhHHHHHH-HhcCCcEEEEEeCCCCC------------HHHHHHHhcCCCCCC--CC
Q 042374 126 AIHVRDEVISQVLGDKNLKIGTLVIHQNIRK-RLRQVKMLIVLDAVHDG------------FTQLESLAGELDKFT--TG 190 (714)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~------------~~~~~~l~~~l~~~~--~g 190 (714)
.-+++....|.+. +.++.+.+ +-..+++.+.||+++.. ....+.++..+.... .|
T Consensus 734 ----GPElL~KyIGaSE------q~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~G 803 (952)
T KOG0735|consen 734 ----GPELLSKYIGASE------QNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDG 803 (952)
T ss_pred ----CHHHHHHHhcccH------HHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccce
Confidence 1122333334332 11133333 33578999999998653 123556666654322 35
Q ss_pred cEEE-EEcCChhHHHh----cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChh
Q 042374 191 SRII-ITTRDKQVLDK----CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLA 257 (714)
Q Consensus 191 s~Il-iTtR~~~v~~~----~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 257 (714)
.-|+ .|||.+-+-.+ .+.++.+.=+.-++.+..+++...+-.-. .+ .....+.++.+.+|.--|
T Consensus 804 V~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~-~~--~~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 804 VYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLL-KD--TDVDLECLAQKTDGFTGA 872 (952)
T ss_pred EEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccC-Cc--cccchHHHhhhcCCCchh
Confidence 5555 46775533222 23334444445567777888866542111 11 112345677777776543
No 322
>PRK13695 putative NTPase; Provisional
Probab=96.35 E-value=0.0093 Score=54.80 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=21.7
Q ss_pred EEEEEccCchhHHHHHHHHHHHHhh
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
.|+|.|.+|+|||||++.++.....
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999887653
No 323
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.33 E-value=0.024 Score=50.88 Aligned_cols=121 Identities=17% Similarity=0.129 Sum_probs=62.3
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHH--hCCC--CCccc---c---hh
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQV--LGDK--NLKIG---T---LV 149 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~---~---~~ 149 (714)
...|-|++-.|.||||.|..++-+...+=..++.+.-... .....-...++...-.+ .+.. +.... + ..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg-~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKG-AWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecC-CcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 3567788889999999999999876655444433321111 11122222332220000 1111 00000 0 11
Q ss_pred hH-HHHHHHhc-CCcEEEEEeCCCCC----HHHHHHHhcCCCCCCCCcEEEEEcCChh
Q 042374 150 IH-QNIRKRLR-QVKMLIVLDAVHDG----FTQLESLAGELDKFTTGSRIIITTRDKQ 201 (714)
Q Consensus 150 ~~-~~l~~~l~-~k~~LlVlDdv~~~----~~~~~~l~~~l~~~~~gs~IliTtR~~~ 201 (714)
.. +..++.+. ++-=++|||++-.. .-..+.+...+....++..||+|-|+..
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 11 34455554 44569999998321 1223344444444456778999999764
No 324
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.32 E-value=0.0092 Score=60.83 Aligned_cols=47 Identities=28% Similarity=0.216 Sum_probs=37.4
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHH
Q 042374 57 DGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
..++|+...++++.+.+..-.....-|.|+|..|+||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 45899999998888877543333456789999999999999999853
No 325
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.028 Score=57.45 Aligned_cols=152 Identities=17% Similarity=0.160 Sum_probs=82.9
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHh-
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRL- 158 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l- 158 (714)
-+--.++|++|.|||+++.++++.+ +.-++.-...++... ..+++.|
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L----~ydIydLeLt~v~~n----------------------------~dLr~LL~ 282 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL----NYDIYDLELTEVKLD----------------------------SDLRHLLL 282 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc----CCceEEeeeccccCc----------------------------HHHHHHHH
Confidence 3567799999999999999999754 222332211111111 1233333
Q ss_pred -cCCcEEEEEeCCCCCH-------H------------HHHHHhcCCC--CCCC-CcEE-EEEcCChhHH-----HhcCCC
Q 042374 159 -RQVKMLIVLDAVHDGF-------T------------QLESLAGELD--KFTT-GSRI-IITTRDKQVL-----DKCGVN 209 (714)
Q Consensus 159 -~~k~~LlVlDdv~~~~-------~------------~~~~l~~~l~--~~~~-gs~I-liTtR~~~v~-----~~~~~~ 209 (714)
...+-+||++|++... . .+.-|+..+. |..+ +-|| ++||-..+-. +..+.+
T Consensus 283 ~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmD 362 (457)
T KOG0743|consen 283 ATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMD 362 (457)
T ss_pred hCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcce
Confidence 2445677777774320 0 0111222221 1222 2355 4677655432 222344
Q ss_pred eEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHhhhhh-ccC
Q 042374 210 YVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVLGSSL-YQK 268 (714)
Q Consensus 210 ~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l-~~~ 268 (714)
..+.+.--+.+....|+..+...+. ++ .++.+|.+...|.-+.=..++..+ ..+
T Consensus 363 mhI~mgyCtf~~fK~La~nYL~~~~-~h----~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 363 MHIYMGYCTFEAFKTLASNYLGIEE-DH----RLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred eEEEcCCCCHHHHHHHHHHhcCCCC-Cc----chhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 5688999999999999988864332 23 455666666666666544444443 444
No 326
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.31 E-value=0.012 Score=53.79 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.9
Q ss_pred EEEEEccCchhHHHHHHHHHHHH
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
.|.|.|.+|.||||+|+.++++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999873
No 327
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.29 E-value=0.01 Score=60.91 Aligned_cols=52 Identities=21% Similarity=0.238 Sum_probs=38.9
Q ss_pred CCcccchhhHHHHHhhhccc------------CCCeEEEEEEccCchhHHHHHHHHHHHHhhcc
Q 042374 57 DGFVGLNSRIEEVKSLLCLE------------SRDVRIVGIWGMGGIGKTTIASAVFHQISRHF 108 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~~------------~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f 108 (714)
.++||.++.++.+.-++... ....+.|.++|++|+|||++|+.++......|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 45889888888876555421 11246789999999999999999999775543
No 328
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.28 E-value=0.036 Score=49.67 Aligned_cols=54 Identities=11% Similarity=0.262 Sum_probs=36.4
Q ss_pred HHHHHHhcCCcEEEEEeCC----CCCHHHHHHHhcCCCCC-CCCcEEEEEcCChhHHHhcC
Q 042374 152 QNIRKRLRQVKMLIVLDAV----HDGFTQLESLAGELDKF-TTGSRIIITTRDKQVLDKCG 207 (714)
Q Consensus 152 ~~l~~~l~~k~~LlVlDdv----~~~~~~~~~l~~~l~~~-~~gs~IliTtR~~~v~~~~~ 207 (714)
-.|.+.+-+++-+++=|+- +.+ ..|+- ...+... ..|+.|+++|.+.++...+.
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~-~s~~i-m~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPD-LSWEI-MRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChH-HHHHH-HHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 5677778888999999975 333 33332 2222222 35999999999998877663
No 329
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.043 Score=52.31 Aligned_cols=54 Identities=35% Similarity=0.442 Sum_probs=40.8
Q ss_pred CCCCcccchhhHHHHHhhhccc-----------CCCeEEEEEEccCchhHHHHHHHHHHHHhhcc
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLE-----------SRDVRIVGIWGMGGIGKTTIASAVFHQISRHF 108 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~-----------~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f 108 (714)
....+=|.+..+++|.+.+... -..++-|.++|.+|.|||-||++|+++...-|
T Consensus 183 ty~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 183 TYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred hhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 3455678899999988876431 13466788999999999999999998755443
No 330
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.27 E-value=0.033 Score=54.25 Aligned_cols=25 Identities=36% Similarity=0.593 Sum_probs=22.2
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
+..+++|+|..|+|||||++.++..
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999864
No 331
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.056 Score=54.87 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=29.1
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
+.++++++|+.|+||||++..++.....+-..+.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4679999999999999999999987654434455554
No 332
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.25 E-value=0.034 Score=51.98 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=21.7
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+..+++|+|..|.|||||++.++.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999985
No 333
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.24 E-value=0.04 Score=51.06 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.8
Q ss_pred EEEEEccCchhHHHHHHHHHHHH
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
+|.|+|++|+||||+|+.++.+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998765
No 334
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.23 E-value=0.0078 Score=53.11 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=29.8
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
..+|-|.|.+|.||||||+++..++...-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 468899999999999999999999887766666664
No 335
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.22 E-value=0.021 Score=55.43 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=35.2
Q ss_pred HHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 68 EVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 68 ~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
.|.++|..+=....++.|.|.+|+|||++|..+......+-..++|+.
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 344555444345789999999999999999998875444556777775
No 336
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.22 E-value=0.02 Score=52.76 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.1
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
+..+++|+|..|.|||||++.++..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999863
No 337
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.22 E-value=0.041 Score=50.55 Aligned_cols=28 Identities=36% Similarity=0.407 Sum_probs=24.5
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
...+|.|.|++|+||||+|+.++.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999987654
No 338
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.19 E-value=0.038 Score=51.75 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=19.5
Q ss_pred EEEEEccCchhHHHHHHHHHH
Q 042374 82 IVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+++|+|+.|.|||||++.++.
T Consensus 24 ~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999999874
No 339
>PRK10867 signal recognition particle protein; Provisional
Probab=96.19 E-value=0.085 Score=55.38 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=25.0
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhc
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRH 107 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~ 107 (714)
...+|.++|++|+||||.|.+++.....+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36799999999999999999998876555
No 340
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.17 E-value=0.06 Score=56.62 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=28.2
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEe
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFM 114 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 114 (714)
.+.+|.++|.+|+||||.|..++..++.+-..+..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV 129 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLV 129 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEe
Confidence 467999999999999999999998776543334444
No 341
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.17 E-value=0.06 Score=51.48 Aligned_cols=124 Identities=18% Similarity=0.246 Sum_probs=69.3
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhh-------------cc---cceEEeeechhcccccCh----------------
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISR-------------HF---QGKCFMANVREESNKMGA---------------- 126 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~-------------~f---~~~~~~~~~~~~~~~~~~---------------- 126 (714)
+...++|+|+.|.|||||.+.+..-++. .. ..+.||+....+...+.+
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence 3468999999999999999999862110 11 246666654332222211
Q ss_pred --------HHHHHHHHHHHhCCCC------CcccchhhH-HHHHHHhcCCcEEEEEeCCCCC-----HHHHHHHhcCCCC
Q 042374 127 --------IHVRDEVISQVLGDKN------LKIGTLVIH-QNIRKRLRQVKMLIVLDAVHDG-----FTQLESLAGELDK 186 (714)
Q Consensus 127 --------~~~~~~~~~~~~~~~~------~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~-----~~~~~~l~~~l~~ 186 (714)
.+.+.+.++. .|... .+.+.-+.. -.+.+.|..++=|++||+--.. ....-.+...+..
T Consensus 109 ~~~~~~~d~~~v~~aL~~-Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~ 187 (254)
T COG1121 109 FRRLNKKDKEKVDEALER-VGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ 187 (254)
T ss_pred cccccHHHHHHHHHHHHH-cCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 1223333333 11111 111111222 3456678889999999985322 2233344444432
Q ss_pred CCCCcEEEEEcCChhHHHh
Q 042374 187 FTTGSRIIITTRDKQVLDK 205 (714)
Q Consensus 187 ~~~gs~IliTtR~~~v~~~ 205 (714)
.|+.|+++|.+-.....
T Consensus 188 --eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 188 --EGKTVLMVTHDLGLVMA 204 (254)
T ss_pred --CCCEEEEEeCCcHHhHh
Confidence 38899999998876554
No 342
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.16 E-value=0.032 Score=52.54 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=22.2
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
...+++|+|..|.|||||++.++..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 343
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.16 E-value=0.02 Score=60.83 Aligned_cols=50 Identities=22% Similarity=0.228 Sum_probs=36.6
Q ss_pred HHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 66 IEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 66 ~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
+..+.++|..+=....++.|.|.+|+|||||+..++.....+-..++|+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 45555655443345679999999999999999999887655434567775
No 344
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.15 E-value=0.0036 Score=52.01 Aligned_cols=26 Identities=35% Similarity=0.653 Sum_probs=22.3
Q ss_pred EEEEccCchhHHHHHHHHHHHHhhcc
Q 042374 83 VGIWGMGGIGKTTIASAVFHQISRHF 108 (714)
Q Consensus 83 v~i~G~~GiGKTtLa~~~~~~~~~~f 108 (714)
|-|+|.+|+|||++|+.++..+.+++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999998776544
No 345
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.14 E-value=0.015 Score=59.78 Aligned_cols=112 Identities=17% Similarity=0.240 Sum_probs=63.2
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHhc
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRLR 159 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 159 (714)
...|.|.|+.|.||||+++.+...+.......++.. ... ....... ..................+.++..++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti-----Edp--~E~~~~~-~~~~i~q~evg~~~~~~~~~l~~~lr 193 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI-----EDP--IEYVHRN-KRSLINQREVGLDTLSFANALRAALR 193 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE-----cCC--hhhhccC-ccceEEccccCCCCcCHHHHHHHhhc
Confidence 468999999999999999999887765555555543 111 1000000 00000001111111112266777888
Q ss_pred CCcEEEEEeCCCCCHHHHHHHhcCCCCCCCCcEEEEEcCChhHH
Q 042374 160 QVKMLIVLDAVHDGFTQLESLAGELDKFTTGSRIIITTRDKQVL 203 (714)
Q Consensus 160 ~k~~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~v~ 203 (714)
..+=.|++|++.+. +.+...... ...|..|+.|.......
T Consensus 194 ~~pd~i~vgEird~-~~~~~~l~a---a~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 194 EDPDVILIGEMRDL-ETVELALTA---AETGHLVFGTLHTNSAA 233 (343)
T ss_pred cCCCEEEEeCCCCH-HHHHHHHHH---HHcCCcEEEEEcCCCHH
Confidence 89999999999876 444433332 23455567666655443
No 346
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.14 E-value=0.035 Score=51.91 Aligned_cols=116 Identities=22% Similarity=0.245 Sum_probs=57.3
Q ss_pred HHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcc
Q 042374 66 IEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKI 145 (714)
Q Consensus 66 ~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (714)
.+.+..++. .+-+++.|.|.+|.||||+++.+...+...-..++++. ..... ...+... .+.. .
T Consensus 7 ~~a~~~~l~---~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a------pT~~A---a~~L~~~-~~~~---a 70 (196)
T PF13604_consen 7 REAVRAILT---SGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA------PTNKA---AKELREK-TGIE---A 70 (196)
T ss_dssp HHHHHHHHH---CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE------SSHHH---HHHHHHH-HTS----E
T ss_pred HHHHHHHHh---cCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC------CcHHH---HHHHHHh-hCcc---h
Confidence 344444443 23457889999999999999999886665433333332 11111 1122222 2211 0
Q ss_pred cchhhHHHHHHHh----------cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCChhH
Q 042374 146 GTLVIHQNIRKRL----------RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDKQV 202 (714)
Q Consensus 146 ~~~~~~~~l~~~l----------~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~~v 202 (714)
... ..+.... ..++-++|+|++... ...+..+..... ..|+++|+.--..+.
T Consensus 71 ~Ti---~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~QL 133 (196)
T PF13604_consen 71 QTI---HSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPNQL 133 (196)
T ss_dssp EEH---HHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TTSH
T ss_pred hhH---HHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcchh
Confidence 000 0000000 123459999999765 245666665543 257788877655543
No 347
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.14 E-value=0.00078 Score=73.70 Aligned_cols=78 Identities=28% Similarity=0.277 Sum_probs=39.0
Q ss_pred cCCCCCCCceeccCCCcCcCCCCCCCCEEECCCCC-C-cccchhhccCCCCCeeccccCccccccC--C---CcCcccEe
Q 042374 622 VADTNDLEGLSLYLRNYALNGCLSSLEYLDLSGND-F-ESLPASIKQLSRLRKLHLCYCDKLQSIP--E---LPLSLKWL 694 (714)
Q Consensus 622 ~~~~~~L~~L~l~~~~~~~~~~l~~L~~L~L~~n~-l-~~lp~~l~~l~~L~~L~l~~~~~~~~lp--~---~~~~L~~L 694 (714)
...++.++.+.+..+.....+. .+.+.+|. + ..+........+++.|++..|.....-- . ....++.+
T Consensus 358 ~~~~~~l~~~~l~~~~~~~~~~-----~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l 432 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCGISDLGL-----ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDL 432 (482)
T ss_pred HhcCCCcchhhhhhhhccCcch-----HHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccC
Confidence 4456666666666655322111 23333432 2 1222222223337888888877542211 1 13456778
Q ss_pred ecccCccccc
Q 042374 695 DASNCERLQT 704 (714)
Q Consensus 695 ~l~~c~~l~~ 704 (714)
++.+|+.+..
T Consensus 433 ~~~~~~~~~~ 442 (482)
T KOG1947|consen 433 DLSGCRVITL 442 (482)
T ss_pred CccCcccccc
Confidence 8888876654
No 348
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.13 E-value=0.012 Score=58.89 Aligned_cols=57 Identities=25% Similarity=0.261 Sum_probs=40.2
Q ss_pred CCCCcccchhhHHH---HHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccce
Q 042374 55 DLDGFVGLNSRIEE---VKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGK 111 (714)
Q Consensus 55 ~~~~~vGr~~~~~~---l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~ 111 (714)
....+||..+..+. +.+++..+.-..+.|.+.|++|.|||+||..+++++....+.+
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~ 81 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFV 81 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EE
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCee
Confidence 35679999887765 4566655444578999999999999999999999988665433
No 349
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.13 E-value=0.0042 Score=53.75 Aligned_cols=22 Identities=45% Similarity=0.730 Sum_probs=20.3
Q ss_pred EEEEccCchhHHHHHHHHHHHH
Q 042374 83 VGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 83 v~i~G~~GiGKTtLa~~~~~~~ 104 (714)
|+|.|.+|+||||+|+++.++.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999874
No 350
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.13 E-value=0.058 Score=53.71 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=38.4
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhc-ccceEEeeechhcccccChHHHHHHHHHHHhCC
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRH-FQGKCFMANVREESNKMGAIHVRDEVISQVLGD 140 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (714)
...++.|.|.+|+||||++..++.....+ -..++|+. -.....++.+.+...+.+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS------~E~~~~~~~~r~~~~~~~~ 85 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS------LEEPVVRTARRLLGQYAGK 85 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE------cccCHHHHHHHHHHHHhCC
Confidence 35588899999999999999998865443 45677765 2234455666665554443
No 351
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.13 E-value=0.029 Score=53.94 Aligned_cols=38 Identities=11% Similarity=0.098 Sum_probs=27.5
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
....++.|.|.+|.||||+|.+++.....+-..++++.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 34569999999999999998777765433334455654
No 352
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.13 E-value=0.03 Score=59.35 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=24.5
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhc
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRH 107 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~ 107 (714)
..++|+|+|++|+||||++.+++.....+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35799999999999999999998865443
No 353
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.12 E-value=0.017 Score=52.08 Aligned_cols=126 Identities=20% Similarity=0.255 Sum_probs=64.6
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhH-HHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIH-QNIRKR 157 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~ 157 (714)
+..+++|+|..|.|||||++.++.... .....+++.... ... ......... .+.. .+.+.-+.. -.+...
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~-~~~-~~~~~~~~~-----i~~~-~qlS~G~~~r~~l~~~ 94 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKD-IAK-LPLEELRRR-----IGYV-PQLSGGQRQRVALARA 94 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEE-ccc-CCHHHHHhc-----eEEE-eeCCHHHHHHHHHHHH
Confidence 346899999999999999999987543 234555554210 000 001111110 0000 001111122 345556
Q ss_pred hcCCcEEEEEeCCCCC--HHHHHHHhcCCCCC-CCCcEEEEEcCChhHHHhcCCCeEEec
Q 042374 158 LRQVKMLIVLDAVHDG--FTQLESLAGELDKF-TTGSRIIITTRDKQVLDKCGVNYVYEV 214 (714)
Q Consensus 158 l~~k~~LlVlDdv~~~--~~~~~~l~~~l~~~-~~gs~IliTtR~~~v~~~~~~~~~~~l 214 (714)
+...+-++++|+.... ......+...+... ..+..|+++|.+....... .++.+.+
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~-~d~i~~l 153 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA-ADRVIVL 153 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 6667889999998543 12222222222111 1256788888887766553 2344443
No 354
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.12 E-value=0.03 Score=52.43 Aligned_cols=26 Identities=38% Similarity=0.626 Sum_probs=23.4
Q ss_pred EEEEEccCchhHHHHHHHHHHHHhhc
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQISRH 107 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~~~ 107 (714)
+|+|.|.+|+||||+|+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 68999999999999999999987643
No 355
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.11 E-value=0.033 Score=50.86 Aligned_cols=121 Identities=15% Similarity=0.122 Sum_probs=64.2
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHH-HHH--hCCC--CCccc---c---h
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVI-SQV--LGDK--NLKIG---T---L 148 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~--~~~~~---~---~ 148 (714)
...|.|+|-.|-||||.|..++-+...+=..+..+.-.... ....-...++.+- -.+ .+.. ..... + .
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~-~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGA-WSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-CccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 45788999999999999999998766554444444322211 1122222322210 000 1111 00000 0 1
Q ss_pred hhH-HHHHHHhc-CCcEEEEEeCCCCC----HHHHHHHhcCCCCCCCCcEEEEEcCChh
Q 042374 149 VIH-QNIRKRLR-QVKMLIVLDAVHDG----FTQLESLAGELDKFTTGSRIIITTRDKQ 201 (714)
Q Consensus 149 ~~~-~~l~~~l~-~k~~LlVlDdv~~~----~~~~~~l~~~l~~~~~gs~IliTtR~~~ 201 (714)
... +..++.+. ++-=++|||++-.. .-..+.+...+....++..||+|-|+..
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 111 33445553 45569999998332 1234444444444456778999999764
No 356
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.11 E-value=0.037 Score=58.33 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=27.4
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHh--hcccceEEee
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQIS--RHFQGKCFMA 115 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~--~~f~~~~~~~ 115 (714)
.++++++|++|+||||++..++.... ..-..+..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46899999999999999999987654 3334455554
No 357
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.07 E-value=0.034 Score=54.80 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=29.3
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
.+.+++.++|++|+||||.+..++......-..+.++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34689999999999999999999987765433444443
No 358
>PRK14974 cell division protein FtsY; Provisional
Probab=96.07 E-value=0.068 Score=54.13 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=25.1
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhc
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRH 107 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~ 107 (714)
+..+|.++|++|+||||++.+++..+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36799999999999999999999876654
No 359
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.07 E-value=0.029 Score=55.07 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=23.3
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
..|.|.|.+|+||||+|+.+...+.+.-..+.++.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 46889999999999999999987766433344443
No 360
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.04 E-value=0.061 Score=64.83 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=23.1
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
..+-|.++|++|.|||.||+++|.+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 45678999999999999999999864
No 361
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.03 E-value=0.0059 Score=55.49 Aligned_cols=36 Identities=19% Similarity=0.125 Sum_probs=28.3
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHh-hcccceEEee
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQIS-RHFQGKCFMA 115 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~ 115 (714)
..++.+.|+.|+|||.||+.+++.+. ......+-+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d 39 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRID 39 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHh
Confidence 45788999999999999999999876 4444444444
No 362
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.99 E-value=0.045 Score=56.68 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.6
Q ss_pred eEEEEEEccCchhHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
..+++|+|++|.||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 34899999999999999999984
No 363
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.98 E-value=0.015 Score=59.65 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=39.1
Q ss_pred CCcccchhhHHHHHhhhccc------------CCCeEEEEEEccCchhHHHHHHHHHHHHhhcc
Q 042374 57 DGFVGLNSRIEEVKSLLCLE------------SRDVRIVGIWGMGGIGKTTIASAVFHQISRHF 108 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~~------------~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f 108 (714)
.+++|.+..++.+..++... ....+.|.++|++|+|||++|+.++..+...|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 45899888888887666320 01246789999999999999999998765433
No 364
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.96 E-value=0.078 Score=57.16 Aligned_cols=50 Identities=30% Similarity=0.405 Sum_probs=34.8
Q ss_pred hhHHHHHhhhcc---cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 64 SRIEEVKSLLCL---ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 64 ~~~~~l~~~l~~---~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
+-++++..||.. +....+++.+.|++|+||||.++.++++. .|+..-|..
T Consensus 26 kKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el--g~~v~Ew~n 78 (519)
T PF03215_consen 26 KKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL--GFEVQEWIN 78 (519)
T ss_pred HHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh--CCeeEEecC
Confidence 345555555543 22345689999999999999999999875 345555654
No 365
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.95 E-value=1.1 Score=44.72 Aligned_cols=125 Identities=10% Similarity=0.117 Sum_probs=75.4
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhh--------cc-c-ceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchh
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISR--------HF-Q-GKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLV 149 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~--------~f-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (714)
.++..++|..|.||+++|..+++.+-. .. + ...++. . ...... .+
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~--~g~~i~----------------------vd 72 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-I--FDKDLS----------------------KS 72 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-c--CCCcCC----------------------HH
Confidence 567779999999999999999987611 11 1 111111 0 000011 11
Q ss_pred hHHHHHHHh------cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcC-ChhHHHh-cCCCeEEecCCCCHH
Q 042374 150 IHQNIRKRL------RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTR-DKQVLDK-CGVNYVYEVEGLEHN 220 (714)
Q Consensus 150 ~~~~l~~~l------~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR-~~~v~~~-~~~~~~~~l~~L~~~ 220 (714)
+...+.+.+ .+++=++|+|+++.. ....+.+...+....+.+.+|++|. ...+... ....+.+++.+++++
T Consensus 73 ~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~ 152 (299)
T PRK07132 73 EFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQ 152 (299)
T ss_pred HHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHH
Confidence 122222222 146778889998765 2456677777766566777766554 4444432 344678999999999
Q ss_pred HHHHHHHHh
Q 042374 221 KAFELFYRK 229 (714)
Q Consensus 221 ~~~~l~~~~ 229 (714)
+..+.+...
T Consensus 153 ~l~~~l~~~ 161 (299)
T PRK07132 153 KILAKLLSK 161 (299)
T ss_pred HHHHHHHHc
Confidence 998877654
No 366
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.95 E-value=0.033 Score=59.23 Aligned_cols=50 Identities=24% Similarity=0.193 Sum_probs=36.1
Q ss_pred HHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 66 IEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 66 ~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
+..+.++|..+=....++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 44555555433334679999999999999999999987654434567765
No 367
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.94 E-value=0.028 Score=57.25 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=38.4
Q ss_pred HHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcc------cceEEeeechhcccccChHHH
Q 042374 67 EEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHF------QGKCFMANVREESNKMGAIHV 129 (714)
Q Consensus 67 ~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~ 129 (714)
..+.++|..+=....++-|+|++|+|||++|..++....... ..++|+. ....+....+
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~----te~~f~~~rl 153 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID----TEGTFRPERI 153 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe----CCCCcCHHHH
Confidence 334444433334577899999999999999999987543211 3678886 3444444444
No 368
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.94 E-value=0.052 Score=50.83 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.1
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
.+..+++|.|+.|.|||||.+.++...
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999998644
No 369
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.94 E-value=0.043 Score=51.72 Aligned_cols=60 Identities=22% Similarity=0.367 Sum_probs=34.6
Q ss_pred HHHHhcCCcEEEEEeCCCCC--HHHHH-HHhcCCCCCC-C-CcEEEEEcCChhHHHhcCCCeEEecC
Q 042374 154 IRKRLRQVKMLIVLDAVHDG--FTQLE-SLAGELDKFT-T-GSRIIITTRDKQVLDKCGVNYVYEVE 215 (714)
Q Consensus 154 l~~~l~~k~~LlVlDdv~~~--~~~~~-~l~~~l~~~~-~-gs~IliTtR~~~v~~~~~~~~~~~l~ 215 (714)
+...+...+-++++|+.... ....+ .+...+.... . |..||++|.+.+.... ...++.+.
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l~ 196 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRVE 196 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEEe
Confidence 44556778889999998543 12223 3333332222 2 5568888888776543 44555553
No 370
>PTZ00301 uridine kinase; Provisional
Probab=95.94 E-value=0.0071 Score=56.91 Aligned_cols=29 Identities=24% Similarity=0.610 Sum_probs=25.0
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcc
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHF 108 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f 108 (714)
..+|+|.|.+|+||||||+.+..++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999998775544
No 371
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.94 E-value=0.039 Score=50.64 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=25.5
Q ss_pred EEEEEccCchhHHHHHHHHHHHHhhcccceEEe
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQISRHFQGKCFM 114 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 114 (714)
++.++|++|+||||++..++..+.+.-..++.+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i 34 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLV 34 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 578999999999999999998776552233334
No 372
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.13 Score=56.01 Aligned_cols=50 Identities=30% Similarity=0.316 Sum_probs=36.4
Q ss_pred CCcccchhhHHHHHhhhcc----------cCCCeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 57 DGFVGLNSRIEEVKSLLCL----------ESRDVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
+.+=|.++.+.+|.+-+.. +-.+..-|.++|++|.|||-+|++|+.+..=
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL 731 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL 731 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee
Confidence 3456788888887775543 1122456889999999999999999986543
No 373
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.92 E-value=0.053 Score=52.03 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.8
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+..+++|+|+.|.|||||++.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTG 50 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999996
No 374
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.91 E-value=0.0063 Score=45.77 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=20.9
Q ss_pred EEEEEccCchhHHHHHHHHHHHH
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
+|+|.|.+|+||||+++.+...+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 375
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.89 E-value=0.078 Score=50.27 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=21.6
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+..+++|.|..|.|||||++.++.
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999985
No 376
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.88 E-value=0.05 Score=60.91 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.4
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
....|+|+|..|+|||||++.+..
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999999884
No 377
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.86 E-value=0.0029 Score=35.13 Aligned_cols=21 Identities=57% Similarity=1.005 Sum_probs=14.8
Q ss_pred CCCEEECCCCCCcccchhhcc
Q 042374 646 SLEYLDLSGNDFESLPASIKQ 666 (714)
Q Consensus 646 ~L~~L~L~~n~l~~lp~~l~~ 666 (714)
+|++|+|++|+++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777776544
No 378
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.85 E-value=0.055 Score=51.60 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=21.7
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+..+++|+|..|.|||||++.++.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhC
Confidence 456899999999999999999986
No 379
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.087 Score=59.45 Aligned_cols=104 Identities=11% Similarity=0.196 Sum_probs=68.1
Q ss_pred CCcccchhhHHHHHhhhccc-----C-CCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHH
Q 042374 57 DGFVGLNSRIEEVKSLLCLE-----S-RDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVR 130 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~~-----~-~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 130 (714)
..++|.++.+..+.+.+... + .+.-.+.+.|+.|+|||.||++++..+-+..+..+-++ .+ +..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD----ms------e~~ 631 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD----MS------EFQ 631 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec----hh------hhh
Confidence 45899999999998888642 1 13557889999999999999999998766555555554 11 111
Q ss_pred HHHHHHHhCCCCCcccchhhHHHHHHHhcCCcE-EEEEeCCCCC
Q 042374 131 DEVISQVLGDKNLKIGTLVIHQNIRKRLRQVKM-LIVLDAVHDG 173 (714)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~ 173 (714)
+ ...+.|... ....-+....+.+.++.++| +|.||||+..
T Consensus 632 e--vskligsp~-gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 632 E--VSKLIGSPP-GYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred h--hhhccCCCc-ccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 1 233233321 11222233678888888875 5567999765
No 380
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.83 E-value=0.028 Score=53.74 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.7
Q ss_pred EEEEEccCchhHHHHHHHHHHHH
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
.|.|.|++|+||||+|+.++++.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998764
No 381
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.83 E-value=0.04 Score=52.99 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=22.5
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
.+..+++|.|+.|+|||||.+.++.
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3467999999999999999999996
No 382
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.83 E-value=0.05 Score=51.57 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=22.3
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
+..+++|+|..|.|||||++.++..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999863
No 383
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.82 E-value=0.029 Score=61.21 Aligned_cols=49 Identities=18% Similarity=0.124 Sum_probs=37.2
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
..+.++|....+.++.+.+..-......|.|+|..|+||+++|+.+...
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 5567999998888877666432222345789999999999999998653
No 384
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.81 E-value=0.012 Score=56.76 Aligned_cols=30 Identities=33% Similarity=0.435 Sum_probs=26.2
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHHhhc
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQISRH 107 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~ 107 (714)
.+..+|+|.|+.|.|||||++.++...+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 467899999999999999999999876553
No 385
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.80 E-value=0.033 Score=62.38 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=22.6
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
+...++|+|..|.|||||++.+..-.
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998643
No 386
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.79 E-value=0.011 Score=50.61 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=23.1
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
...+|.+.|.-|.||||+++.+++.+
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35589999999999999999999864
No 387
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.79 E-value=0.049 Score=55.39 Aligned_cols=86 Identities=14% Similarity=0.193 Sum_probs=45.5
Q ss_pred eEEEEEEccCchhHHHHHHHHHHH-H-hhcccceEEeeechhcccccChH-HHHHHHHHHHhCCCCCcccchhhHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQ-I-SRHFQGKCFMANVREESNKMGAI-HVRDEVISQVLGDKNLKIGTLVIHQNIRK 156 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~-~-~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 156 (714)
.++|+++|+.|+||||-..+++.+ . ...-..+..+. .+++.+. .-+-+....+.+..-.-..+......-..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT-----tDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~ 277 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT-----TDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIE 277 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE-----eccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHH
Confidence 789999999999999655554443 3 23334555654 2233322 12223344445544333334444433334
Q ss_pred HhcCCcEEEEEeCCC
Q 042374 157 RLRQVKMLIVLDAVH 171 (714)
Q Consensus 157 ~l~~k~~LlVlDdv~ 171 (714)
.++++. +|.+|=+-
T Consensus 278 ~l~~~d-~ILVDTaG 291 (407)
T COG1419 278 ALRDCD-VILVDTAG 291 (407)
T ss_pred HhhcCC-EEEEeCCC
Confidence 455554 45567663
No 388
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.78 E-value=0.061 Score=50.40 Aligned_cols=23 Identities=22% Similarity=0.088 Sum_probs=21.2
Q ss_pred EEEEEEccCchhHHHHHHHHHHH
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
++++|.|+.|.|||||++.++..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 78999999999999999999864
No 389
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.78 E-value=0.087 Score=50.57 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=21.6
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
...+++|+|..|.|||||++.++.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 456899999999999999999985
No 390
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.78 E-value=0.044 Score=60.55 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=22.1
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
.+.+.++|+|+.|.|||||++.+..
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999999985
No 391
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.77 E-value=0.05 Score=51.90 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.5
Q ss_pred EEEEEccCchhHHHHHHHHHHHH
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
.|.|.|++|+||||+|+.++.+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 392
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.77 E-value=0.095 Score=51.43 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=22.7
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
+..+++|+|..|.|||||++.++...
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999998643
No 393
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.77 E-value=0.021 Score=54.23 Aligned_cols=43 Identities=23% Similarity=0.410 Sum_probs=32.4
Q ss_pred hHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhc
Q 042374 65 RIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRH 107 (714)
Q Consensus 65 ~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~ 107 (714)
+..++.+.+....++..+|+|.|++|.|||||+.++...++++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 4455566555555677899999999999999999999877654
No 394
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.75 E-value=0.036 Score=62.09 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.5
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+...++|+|..|.|||||++.+..
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999985
No 395
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.75 E-value=0.0096 Score=56.48 Aligned_cols=28 Identities=39% Similarity=0.597 Sum_probs=24.5
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
++..+|+|+|++|+||||||+.++....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567999999999999999999997654
No 396
>PRK04040 adenylate kinase; Provisional
Probab=95.74 E-value=0.0095 Score=55.19 Aligned_cols=26 Identities=27% Similarity=0.609 Sum_probs=23.3
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
.++|+|+|++|+||||+++.++..+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 36899999999999999999998774
No 397
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.71 E-value=0.0094 Score=56.68 Aligned_cols=26 Identities=42% Similarity=0.704 Sum_probs=23.8
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
+..+|+|.|.+|+||||||+.++..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999876
No 398
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.71 E-value=0.06 Score=52.64 Aligned_cols=38 Identities=26% Similarity=0.317 Sum_probs=33.2
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
+..+++=|+|+.|.||||+|.+++-..+..-..++|++
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID 95 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID 95 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence 45778999999999999999999987777767889997
No 399
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.70 E-value=0.094 Score=48.52 Aligned_cols=25 Identities=44% Similarity=0.603 Sum_probs=22.1
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
+..+++|.|..|.|||||++.++..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 400
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.69 E-value=0.1 Score=52.71 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=28.1
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEe
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFM 114 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 114 (714)
+..+++++|++|+||||++..++...+..-..+..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li 148 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLA 148 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEE
Confidence 468999999999999999999998776542333333
No 401
>PRK03839 putative kinase; Provisional
Probab=95.67 E-value=0.0088 Score=55.32 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=21.6
Q ss_pred EEEEEccCchhHHHHHHHHHHHHh
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
.|.|.|++|+||||+|+.++++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998763
No 402
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.66 E-value=0.054 Score=53.02 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=22.3
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
+..+++|+|..|.|||||++.++..
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999863
No 403
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.66 E-value=0.05 Score=55.27 Aligned_cols=48 Identities=21% Similarity=0.222 Sum_probs=33.4
Q ss_pred HHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhc------ccceEEee
Q 042374 68 EVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRH------FQGKCFMA 115 (714)
Q Consensus 68 ~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~ 115 (714)
.+..+|..+=....++-|+|.+|+|||+++..++...... -..++|+.
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 3444443332456789999999999999999998764321 12678887
No 404
>PRK00625 shikimate kinase; Provisional
Probab=95.65 E-value=0.0087 Score=54.45 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.4
Q ss_pred EEEEEccCchhHHHHHHHHHHHHh
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
.|.|+|++|+||||+++.++++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998764
No 405
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.65 E-value=0.025 Score=56.83 Aligned_cols=132 Identities=17% Similarity=0.244 Sum_probs=68.5
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhccc-------ceEEee-------echhcccccChHHHHHHHHHHH--------
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHFQ-------GKCFMA-------NVREESNKMGAIHVRDEVISQV-------- 137 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~-------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-------- 137 (714)
.-+++|+|.+|+||||+.+++.......-+ ..+-+. .-......++-..+++++.+..
T Consensus 409 GdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~Ave 488 (593)
T COG2401 409 GDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVE 488 (593)
T ss_pred CCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchhHHHH
Confidence 458999999999999999999874432111 011110 0001111222223333333221
Q ss_pred ----hCCCC--------CcccchhhH-HHHHHHhcCCcEEEEEeCCCCCHHH--HHHHhcCCCCC--CCCcEEEEEcCCh
Q 042374 138 ----LGDKN--------LKIGTLVIH-QNIRKRLRQVKMLIVLDAVHDGFTQ--LESLAGELDKF--TTGSRIIITTRDK 200 (714)
Q Consensus 138 ----~~~~~--------~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~~~~--~~~l~~~l~~~--~~gs~IliTtR~~ 200 (714)
.|..+ .+..+.+.. ..|.+.++.++-+++.|.+....+. ...+...+... ..|+.+++.|+.+
T Consensus 489 ILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrp 568 (593)
T COG2401 489 ILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRP 568 (593)
T ss_pred HHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH
Confidence 11111 112222222 5677788888889999998654121 11222222222 3577777777778
Q ss_pred hHHHhcCCCeE
Q 042374 201 QVLDKCGVNYV 211 (714)
Q Consensus 201 ~v~~~~~~~~~ 211 (714)
++..++..+..
T Consensus 569 Ev~~AL~PD~l 579 (593)
T COG2401 569 EVGNALRPDTL 579 (593)
T ss_pred HHHhccCCcee
Confidence 78777654433
No 406
>PRK14527 adenylate kinase; Provisional
Probab=95.65 E-value=0.031 Score=52.24 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=23.0
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
...+|.|+|++|+||||+|+.++.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998754
No 407
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.64 E-value=0.03 Score=63.66 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=21.6
Q ss_pred eEEEEEEccCchhHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
.++++|.|+.|.||||+.+.+.-.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHH
Confidence 478999999999999999999864
No 408
>PRK04328 hypothetical protein; Provisional
Probab=95.64 E-value=0.049 Score=53.18 Aligned_cols=48 Identities=15% Similarity=0.150 Sum_probs=34.6
Q ss_pred HHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 68 EVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 68 ~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
.|.++|..+=....++.|.|.+|.|||+||..++.+...+-+.++|+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344444333345679999999999999999998876444456677775
No 409
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.097 Score=56.49 Aligned_cols=177 Identities=19% Similarity=0.187 Sum_probs=95.6
Q ss_pred CCCCcccchhhHHHHHhhhcc---c-------CCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhccccc
Q 042374 55 DLDGFVGLNSRIEEVKSLLCL---E-------SRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKM 124 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~---~-------~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 124 (714)
....+-|.|+.++++.+.+.. . ..-++-|.++|++|.|||.||++++.+..-.|- . .|.
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf-----~----iSG-- 216 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFF-----S----ISG-- 216 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCce-----e----ccc--
Confidence 456678989887777666532 1 112567889999999999999999986543321 1 000
Q ss_pred ChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCC---------------HHHHHHHhcCCCCCCC
Q 042374 125 GAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG---------------FTQLESLAGELDKFTT 189 (714)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------------~~~~~~l~~~l~~~~~ 189 (714)
.+..+...|..... ..+...+..+.-++++++|.++.. +..+..+......++.
T Consensus 217 ------S~FVemfVGvGAsR-----VRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~ 285 (596)
T COG0465 217 ------SDFVEMFVGVGASR-----VRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG 285 (596)
T ss_pred ------hhhhhhhcCCCcHH-----HHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC
Confidence 00111112221110 002333444566899999988543 1134455555554443
Q ss_pred Cc-EEEEE-cCChhHH-----HhcCCCeEEecCCCCHHHHHHHHHHhhhhcCCC-ChhHHHHHHHHHHHhcCCChh
Q 042374 190 GS-RIIIT-TRDKQVL-----DKCGVNYVYEVEGLEHNKAFELFYRKAFRQNNY-PPDFLGLSLEVVHYARNNPLA 257 (714)
Q Consensus 190 gs-~IliT-tR~~~v~-----~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~~g~Pla 257 (714)
+. -|+++ |--++|. +..+.++.+.++.-+-....++++-++...... .-++ ..|++.+-|.--|
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl----~~iAr~tpGfsGA 357 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDL----KKIARGTPGFSGA 357 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCH----HHHhhhCCCcccc
Confidence 22 23332 2222222 223455677788778788888888666433322 1121 2366667666544
No 410
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=95.63 E-value=0.052 Score=62.06 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=22.1
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
+...++|+|+.|.|||||++.+..-
T Consensus 506 ~Ge~vaIvG~SGsGKSTLl~lL~gl 530 (711)
T TIGR00958 506 PGEVVALVGPSGSGKSTVAALLQNL 530 (711)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999999863
No 411
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.63 E-value=0.074 Score=51.68 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=22.2
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
...+++|.|..|.|||||++.++..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999863
No 412
>PRK08233 hypothetical protein; Provisional
Probab=95.61 E-value=0.0093 Score=55.31 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=23.0
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
..+|+|.|.+|+||||+|..++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999997653
No 413
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.61 E-value=0.016 Score=50.70 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=24.2
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhhcc
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISRHF 108 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~~f 108 (714)
++|.|+|..|+|||||++.+.+.+.++-
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 4799999999999999999999877543
No 414
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.61 E-value=0.17 Score=52.86 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=27.7
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEe
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFM 114 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 114 (714)
...+|.++|+.|+||||++.+++...+.+-..+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV 134 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV 134 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 367999999999999999999998665543334444
No 415
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.60 E-value=0.069 Score=51.82 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=22.0
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
...+++|+|+.|.|||||++.++..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999853
No 416
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.60 E-value=0.027 Score=53.45 Aligned_cols=119 Identities=17% Similarity=0.247 Sum_probs=58.5
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHH-hhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCc--ccc-hhhHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQI-SRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLK--IGT-LVIHQNIR 155 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~l~ 155 (714)
.+++.|+|+.|.||||+.+.+.... ..+ ...|+.... . .. ....++...+...+... .+. ....+.+.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~--~G~~v~a~~--~-~~---~~~d~i~~~l~~~~si~~~~S~f~~el~~l~ 100 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAH--IGSFVPADS--A-TI---GLVDKIFTRMSSRESVSSGQSAFMIDLYQVS 100 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHh--CCCeeEcCC--c-EE---eeeeeeeeeeCCccChhhccchHHHHHHHHH
Confidence 4789999999999999999998521 111 122222100 0 00 01112222211111110 011 11123333
Q ss_pred HHh--cCCcEEEEEeCCCCCHH--H----HHHHhcCCCCC-CCCcEEEEEcCChhHHHhc
Q 042374 156 KRL--RQVKMLIVLDAVHDGFT--Q----LESLAGELDKF-TTGSRIIITTRDKQVLDKC 206 (714)
Q Consensus 156 ~~l--~~k~~LlVlDdv~~~~~--~----~~~l~~~l~~~-~~gs~IliTtR~~~v~~~~ 206 (714)
..+ ..++-|+++|+.....+ . ...+...+... ..+..+|+||...+.+...
T Consensus 101 ~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 101 KALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 332 46789999999865311 1 12233333222 2245799999988876653
No 417
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.59 E-value=0.042 Score=55.30 Aligned_cols=60 Identities=12% Similarity=0.176 Sum_probs=38.3
Q ss_pred HHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHh------hcccceEEeeechhcccccChHHHH
Q 042374 67 EEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQIS------RHFQGKCFMANVREESNKMGAIHVR 130 (714)
Q Consensus 67 ~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~------~~f~~~~~~~~~~~~~~~~~~~~~~ 130 (714)
..|.++|..+=...+++-|+|++|+|||+|+..++-... ..-..++|++ ....+...++.
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId----tE~~f~~eRi~ 148 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID----TEGTFRPDRIR 148 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE----cCCCCCHHHHH
Confidence 344445543334567999999999999999998875322 1124678886 34444555443
No 418
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.58 E-value=0.12 Score=50.13 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=20.7
Q ss_pred EEEEEccCchhHHHHHHHHHHHHh
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
+..|+|++|+|||+||..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999987543
No 419
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.58 E-value=0.44 Score=47.03 Aligned_cols=128 Identities=8% Similarity=0.045 Sum_probs=70.8
Q ss_pred HHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhc-------------ccceEEeeechhcccccChHHHHHH
Q 042374 66 IEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRH-------------FQGKCFMANVREESNKMGAIHVRDE 132 (714)
Q Consensus 66 ~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~-------------f~~~~~~~~~~~~~~~~~~~~~~~~ 132 (714)
.++|...+..+ .-.+...++|+.|+||+++|..++..+--. .+...|+.
T Consensus 6 ~~~L~~~i~~~-rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~----------------- 67 (290)
T PRK05917 6 WEALIQRVRDQ-KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFS----------------- 67 (290)
T ss_pred HHHHHHHHHcC-CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEe-----------------
Confidence 44555555332 225678899999999999999999865221 11111111
Q ss_pred HHHHHhCCCCCcccchhhHHHHHHHhc-----CCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCC-hhHHHh
Q 042374 133 VISQVLGDKNLKIGTLVIHQNIRKRLR-----QVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRD-KQVLDK 205 (714)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~-~~v~~~ 205 (714)
.......-..+..+.+.+.+. ++.-++|+|+++.. .+..+.++..+....+++.+|++|.+ ..+..-
T Consensus 68 ------p~~~~~~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~T 141 (290)
T PRK05917 68 ------PQGKGRLHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPT 141 (290)
T ss_pred ------cCCCCCcCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHH
Confidence 000000011223334444432 44568889999865 35677887777665667766666555 444322
Q ss_pred -cCCCeEEecCCC
Q 042374 206 -CGVNYVYEVEGL 217 (714)
Q Consensus 206 -~~~~~~~~l~~L 217 (714)
....+.+.+.++
T Consensus 142 I~SRcq~~~~~~~ 154 (290)
T PRK05917 142 IRSRSLSIHIPME 154 (290)
T ss_pred HHhcceEEEccch
Confidence 233456666654
No 420
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.55 E-value=0.036 Score=54.74 Aligned_cols=39 Identities=23% Similarity=0.173 Sum_probs=34.5
Q ss_pred CCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 77 SRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 77 ~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
=+..+++.|+|.+|+|||+++.++..+...+...++|+.
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 356789999999999999999999998877788888886
No 421
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.55 E-value=0.13 Score=50.93 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=22.0
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
+..+++|+|+.|.|||||++.++..
T Consensus 38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 38 RGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999863
No 422
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.54 E-value=0.076 Score=55.34 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.4
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
+..+++++|+.|+||||++.+++.+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999875
No 423
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.54 E-value=0.08 Score=51.14 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=22.1
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
...+++|+|+.|.|||||++.++..
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999863
No 424
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.53 E-value=0.012 Score=54.48 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=30.6
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
.++|.|+|+.|+|||||++.+..+...+|...+...
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeec
Confidence 468899999999999999999999888886555553
No 425
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.52 E-value=0.1 Score=49.73 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=20.0
Q ss_pred EEEEEccCchhHHHHHHHHHH
Q 042374 82 IVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+++|+|+.|.|||||++.++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999985
No 426
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.51 E-value=0.047 Score=59.05 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=37.6
Q ss_pred HHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 66 IEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 66 ~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
+..+.++|..+=....++.|.|++|+|||||+.+++.....+-+.++|+.
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45566666444455779999999999999999999987655555666664
No 427
>PRK14528 adenylate kinase; Provisional
Probab=95.51 E-value=0.073 Score=49.35 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.1
Q ss_pred EEEEEEccCchhHHHHHHHHHHHH
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
+.|.|.|++|+||||+|+.++...
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998654
No 428
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.50 E-value=0.12 Score=50.81 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.5
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+..+++|+|..|.|||||++.++.
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 31 KNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999984
No 429
>PRK05973 replicative DNA helicase; Provisional
Probab=95.49 E-value=0.067 Score=51.13 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=34.1
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
+..++.|.|.+|+|||++|..++.....+-..++|+. -+.+..++.+.+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS------lEes~~~i~~R~~ 112 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT------LEYTEQDVRDRLR 112 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE------EeCCHHHHHHHHH
Confidence 4568899999999999999999886544444555654 2333445555543
No 430
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.49 E-value=0.098 Score=50.41 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=22.1
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
+..+++|+|..|.|||||++.++..
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999863
No 431
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.46 E-value=0.015 Score=53.68 Aligned_cols=43 Identities=19% Similarity=0.205 Sum_probs=32.9
Q ss_pred CCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHH
Q 042374 56 LDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
...++|.+..+..++-... +.+-+.++|++|+|||++|+.+..
T Consensus 2 f~dI~GQe~aKrAL~iAAa----G~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA----GGHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH----CC--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhhcCcHHHHHHHHHHHc----CCCCeEEECCCCCCHHHHHHHHHH
Confidence 4578999988888766553 246789999999999999999986
No 432
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.46 E-value=0.2 Score=51.29 Aligned_cols=41 Identities=29% Similarity=0.387 Sum_probs=31.4
Q ss_pred HHHHHhhhccc-------CCCeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 66 IEEVKSLLCLE-------SRDVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 66 ~~~l~~~l~~~-------~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
.++|.+++-.+ ...+.||..+|.-|.||||-|-++++.+++
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk 126 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK 126 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHH
Confidence 35666666431 124678999999999999999999987766
No 433
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.45 E-value=0.056 Score=45.37 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=34.3
Q ss_pred cccchhhHHHHHhhhc----c-cCCCeEEEEEEccCchhHHHHHHHHHHH
Q 042374 59 FVGLNSRIEEVKSLLC----L-ESRDVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 59 ~vGr~~~~~~l~~~l~----~-~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
++|..-..+.+.+++. . ...++-|++.+|++|+|||.+++.+++.
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 6777766666555553 2 2455779999999999999999999985
No 434
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=95.44 E-value=0.044 Score=61.29 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=21.8
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
+...++|+|..|.|||||++.+...
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~gl 381 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPRF 381 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999999853
No 435
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.44 E-value=0.13 Score=50.38 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=22.1
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
+..+++|+|..|.|||||++.++..
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14249 29 ERQITAIIGPSGCGKSTLLRALNRM 53 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999864
No 436
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=95.42 E-value=0.13 Score=59.66 Aligned_cols=197 Identities=13% Similarity=0.092 Sum_probs=96.1
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhh-cc---cceEEeeech-hcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHH
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISR-HF---QGKCFMANVR-EESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIR 155 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~-~f---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 155 (714)
.-+.|+|.+|.||||+.+.++-.... .+ +..+++..-. .....+.-..-+.+.+............. .....
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~---~~~~~ 299 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIAKQL---IEAHQ 299 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCcchh---hHHHH
Confidence 47889999999999999999974322 21 2233332110 00111111102222222222222111111 12224
Q ss_pred HHhcCCcEEEEEeCCCCC-----HHHHHHHhcCCCCCCCCcEEEEEcCChhHHHhcCCCeEEecCCCCHHHHHHHHHHh-
Q 042374 156 KRLRQVKMLIVLDAVHDG-----FTQLESLAGELDKFTTGSRIIITTRDKQVLDKCGVNYVYEVEGLEHNKAFELFYRK- 229 (714)
Q Consensus 156 ~~l~~k~~LlVlDdv~~~-----~~~~~~l~~~l~~~~~gs~IliTtR~~~v~~~~~~~~~~~l~~L~~~~~~~l~~~~- 229 (714)
+.+...+.++.+|+++.. ......+.. +...-+.+.+|+|+|....-.....-...++..+.++...+.....
T Consensus 300 e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~-f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~~ 378 (824)
T COG5635 300 ELLKTGKLLLLLDGLDELEPKNQRALIREINK-FLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQW 378 (824)
T ss_pred HHHhccchhhHhhccchhhhhhHHHHHHHHHH-HhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHHH
Confidence 678899999999999765 111112111 1122357899999998765444333345566666666555433311
Q ss_pred ----hhhcC--CCCh--hHHH----HHHHHHHHhcCCChhhHHhhhhhc------cCCHHHHHHHHHHHh
Q 042374 230 ----AFRQN--NYPP--DFLG----LSLEVVHYARNNPLALEVLGSSLY------QKSKQQWEDRLHNLR 281 (714)
Q Consensus 230 ----~~~~~--~~~~--~~~~----~~~~i~~~~~g~Plai~~~~~~l~------~~~~~~w~~~l~~l~ 281 (714)
..... .... .+.. -..+..+.....|+++...+..-. .....-++.+++.+-
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~ 448 (824)
T COG5635 379 LDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALL 448 (824)
T ss_pred HHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHH
Confidence 11111 1111 1111 112334445778888776663332 223455666655543
No 437
>PRK06547 hypothetical protein; Provisional
Probab=95.42 E-value=0.014 Score=53.02 Aligned_cols=27 Identities=37% Similarity=0.347 Sum_probs=23.9
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
....+|+|.|++|+||||+|+.++...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999999863
No 438
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.41 E-value=0.11 Score=51.57 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=22.8
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
+..+++|+|..|.|||||++.++.-.
T Consensus 29 ~Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 29 PGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 45689999999999999999998754
No 439
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.40 E-value=0.036 Score=52.75 Aligned_cols=119 Identities=13% Similarity=0.065 Sum_probs=61.4
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH-HHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcc---cchhhHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH-QISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKI---GTLVIHQNI 154 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l 154 (714)
..++++|.|+.|.||||+.+.++- .+..+--..+|-.. .. .....+++..+...+.... ....+..++
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~-----~~---~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~ 101 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASS-----AT---LSIFDSVLTRMGASDSIQHGMSTFMVELSET 101 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCc-----eE---EeccceEEEEecCccccccccchHHHHHHHH
Confidence 356889999999999999999987 43332222222210 00 0011112211111111111 111122444
Q ss_pred HHHh--cCCcEEEEEeCCCCC---HHH---HHHHhcCCCCCCCCcEEEEEcCChhHHHhc
Q 042374 155 RKRL--RQVKMLIVLDAVHDG---FTQ---LESLAGELDKFTTGSRIIITTRDKQVLDKC 206 (714)
Q Consensus 155 ~~~l--~~k~~LlVlDdv~~~---~~~---~~~l~~~l~~~~~gs~IliTtR~~~v~~~~ 206 (714)
.+.+ ..++-|+++|+.... .+. ...+...+... .++.+|++|...+++...
T Consensus 102 ~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 102 SHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 4444 357899999997332 011 12233333322 578899999998876543
No 440
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.40 E-value=0.045 Score=61.29 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.0
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
+...++|+|..|.|||||++.+...
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl 392 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3567999999999999999999863
No 441
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.39 E-value=0.091 Score=48.15 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=22.0
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
.+.+|.++.|++|+||||+.+.+-+
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHh
Confidence 4578999999999999999998754
No 442
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.38 E-value=0.05 Score=53.20 Aligned_cols=64 Identities=14% Similarity=0.183 Sum_probs=38.9
Q ss_pred HHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHh--hc----ccceEEeeechhcccccChHHHHHHHHHH
Q 042374 68 EVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQIS--RH----FQGKCFMANVREESNKMGAIHVRDEVISQ 136 (714)
Q Consensus 68 ~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~--~~----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (714)
.|.++|..+=....++=|+|.+|+|||+||..++-.+. .. =..++|++ ....+....+ .++++.
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid----Te~~f~~~Rl-~~i~~~ 95 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID----TEGTFSPERL-QQIAER 95 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE----SSSSS-HHHH-HHHHHH
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe----CCCCCCHHHH-HHHhhc
Confidence 44555533223356889999999999999999876432 11 23477776 3444555544 344443
No 443
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.37 E-value=0.16 Score=45.14 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.8
Q ss_pred EEEEEccCchhHHHHHHHHHHH
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
++.+.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3679999999999999999876
No 444
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.37 E-value=0.063 Score=46.32 Aligned_cols=59 Identities=10% Similarity=-0.004 Sum_probs=21.7
Q ss_pred cCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccC
Q 042374 537 VGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALG 597 (714)
Q Consensus 537 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 597 (714)
+..+.+|+.+.+.. .....-...|.++++|+.+.+.++ ....-...|..+++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 45555666666553 122222233455555666665542 211111234445455555554
No 445
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=95.37 E-value=0.14 Score=50.65 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.8
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
+..+++|+|..|.|||||++.++...
T Consensus 45 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 45 KNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45689999999999999999998743
No 446
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.37 E-value=0.019 Score=52.84 Aligned_cols=25 Identities=44% Similarity=0.591 Sum_probs=22.3
Q ss_pred EEEEEccCchhHHHHHHHHHHHHhh
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
+|+|.|.+|+||||||+.++.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987654
No 447
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.37 E-value=0.013 Score=53.96 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=23.1
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
...|.|+|++|+||||+|+.++....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998763
No 448
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.37 E-value=0.013 Score=54.61 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.9
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
+.++|+|.|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998754
No 449
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=95.37 E-value=0.046 Score=62.75 Aligned_cols=24 Identities=38% Similarity=0.367 Sum_probs=21.5
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+...|+|+|..|.|||||++.+..
T Consensus 504 ~Ge~vaIvG~sGsGKSTLlklL~g 527 (710)
T TIGR03796 504 PGQRVALVGGSGSGKSTIAKLVAG 527 (710)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999999985
No 450
>PRK13948 shikimate kinase; Provisional
Probab=95.35 E-value=0.024 Score=51.97 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=23.9
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
....|.++|+.|+||||+++.+++....
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3467889999999999999999987643
No 451
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.34 E-value=1.1 Score=44.46 Aligned_cols=68 Identities=12% Similarity=0.177 Sum_probs=44.2
Q ss_pred CCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCChh-HHHh-cCCCeEEecCCCCHHHHHHHHHH
Q 042374 160 QVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDKQ-VLDK-CGVNYVYEVEGLEHNKAFELFYR 228 (714)
Q Consensus 160 ~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~l~~~ 228 (714)
+++-++|+|+++.. ....+.++..+..-.+++.+|++|.+.+ +..- ....+.+.+.. +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 45668999999876 4567788887776566676776665543 3332 23345677766 66666666643
No 452
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.34 E-value=0.017 Score=54.48 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=27.0
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccc
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQG 110 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~ 110 (714)
....|.++||+|.||||.++.++..+..++..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCC
Confidence 45688899999999999999999877766654
No 453
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.32 E-value=0.15 Score=47.23 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=24.4
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
...++.|.|.+|.||||+|+.+......
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999987643
No 454
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.11 Score=48.16 Aligned_cols=61 Identities=23% Similarity=0.282 Sum_probs=37.4
Q ss_pred HHHHHHhcCCcEEEEEeCCCCC--HHHHHHHhcCCCC-CCCCcEEEEEcCChhHHHhcCCCeEE
Q 042374 152 QNIRKRLRQVKMLIVLDAVHDG--FTQLESLAGELDK-FTTGSRIIITTRDKQVLDKCGVNYVY 212 (714)
Q Consensus 152 ~~l~~~l~~k~~LlVlDdv~~~--~~~~~~l~~~l~~-~~~gs~IliTtR~~~v~~~~~~~~~~ 212 (714)
..+.+.+.=++-+.|||+.++. -+.+..+...+.. ..+|+.+++.|..++++.....+.++
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 4555666667889999999876 1222222222111 23577788888888888877555443
No 455
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=95.30 E-value=0.17 Score=49.87 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=22.1
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
+..+++|+|+.|.|||||++.++..
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999864
No 456
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.30 E-value=0.24 Score=46.74 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=22.6
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
.+..+++|.|+.|.|||||++.++..
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 34568999999999999999999874
No 457
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.29 E-value=0.19 Score=48.71 Aligned_cols=119 Identities=18% Similarity=0.228 Sum_probs=73.9
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
..+.|+|-... .++..++.......+.+.++|++|+|||+-++.+++... ..|+. ..++.+.....+..+.
T Consensus 70 ~~~~~l~tkt~-r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~p-----~~~l~---~~~p~~~a~~~i~~i~ 140 (297)
T COG2842 70 LAPDFLETKTV-RRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSNP-----NALLI---EADPSYTALVLILIIC 140 (297)
T ss_pred ccccccccchh-HhHhhhhhhhhhcCceEEEeccccchhHHHHHhhcccCc-----cceee---cCChhhHHHHHHHHHH
Confidence 56677775543 333334433333345888999999999999999987532 23332 1455666666666666
Q ss_pred HHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCC-HHHHHHHhcCC
Q 042374 135 SQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG-FTQLESLAGEL 184 (714)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~l~~~l 184 (714)
...++.......+ ....+...+.+..=+++.|+.+.. ...++.+....
T Consensus 141 ~~~~~~~~~~~~d--~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~ 189 (297)
T COG2842 141 AAAFGATDGTIND--LTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIH 189 (297)
T ss_pred HHHhcccchhHHH--HHHHHHHHHccCcceeeeehhhccChHHHHHHHHHH
Confidence 6655544332221 114555566788889999999876 45566666543
No 458
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.29 E-value=0.031 Score=50.39 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=24.8
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
...+++|+|..|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4569999999999999999999987655
No 459
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.38 Score=52.62 Aligned_cols=174 Identities=15% Similarity=0.124 Sum_probs=88.2
Q ss_pred CcccchhhHHHHHhhhcccC--C-----CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHH
Q 042374 58 GFVGLNSRIEEVKSLLCLES--R-----DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVR 130 (714)
Q Consensus 58 ~~vGr~~~~~~l~~~l~~~~--~-----~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 130 (714)
...+++.-+..+.+.+...- . -..++.++|.+|+||||+++.++.+..-|+-. +.+..-++......+..
T Consensus 402 ~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~e---vdc~el~~~s~~~~etk 478 (953)
T KOG0736|consen 402 SPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLE---VDCYELVAESASHTETK 478 (953)
T ss_pred CCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEe---ccHHHHhhcccchhHHH
Confidence 34556666667777776431 1 24688999999999999999999887655311 22111122211111111
Q ss_pred HHHHHHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCC-----C--C-----HHHHHHHhc-C-CCCCCCCcEEEEE
Q 042374 131 DEVISQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVH-----D--G-----FTQLESLAG-E-LDKFTTGSRIIIT 196 (714)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~-----~--~-----~~~~~~l~~-~-l~~~~~gs~IliT 196 (714)
.++. ..+.-.-.+..|.+-+++ . . ......+.. . ++...++.-++.|
T Consensus 479 l~~~-------------------f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t 539 (953)
T KOG0736|consen 479 LQAI-------------------FSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVAT 539 (953)
T ss_pred HHHH-------------------HHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEe
Confidence 1111 111112234455554432 1 1 111222222 1 2212234334444
Q ss_pred cC-ChhHHHhcC--CCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCCh
Q 042374 197 TR-DKQVLDKCG--VNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPL 256 (714)
Q Consensus 197 tR-~~~v~~~~~--~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 256 (714)
+. .+.+..... ..+.++++.++++|..++|++++-...- +-+...++++++|.|.-.
T Consensus 540 ~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~---n~~v~~k~~a~~t~gfs~ 599 (953)
T KOG0736|consen 540 TSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPL---NQDVNLKQLARKTSGFSF 599 (953)
T ss_pred ccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhcccc---chHHHHHHHHHhcCCCCH
Confidence 43 333333221 2357889999999999999988633221 111345677777777644
No 460
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.27 E-value=0.048 Score=48.66 Aligned_cols=20 Identities=35% Similarity=0.381 Sum_probs=18.4
Q ss_pred EEccCchhHHHHHHHHHHHH
Q 042374 85 IWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 85 i~G~~GiGKTtLa~~~~~~~ 104 (714)
|.|++|+||||+|+.++.+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999865
No 461
>PRK13947 shikimate kinase; Provisional
Probab=95.27 E-value=0.014 Score=53.57 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=22.2
Q ss_pred EEEEEccCchhHHHHHHHHHHHHhh
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
.|.|+|++|+||||+|+.++++..-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999987644
No 462
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.26 E-value=0.033 Score=54.61 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=28.8
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHHhhcccceE
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKC 112 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~ 112 (714)
.+..+|.|.|.+|.|||||+..+.+.+.......+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~V 136 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAV 136 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEE
Confidence 45789999999999999999999998766654333
No 463
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.24 E-value=0.059 Score=61.65 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.4
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+...++|+|..|.|||||++.+..
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999999985
No 464
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.24 E-value=0.065 Score=58.20 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=20.9
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
...+|++||++|.||||+|..+-+
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~r 516 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLR 516 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999998764
No 465
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.23 E-value=0.1 Score=55.41 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=23.7
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
..++++++|+.|+||||.+.+++....
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHH
Confidence 357999999999999999999998653
No 466
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.23 E-value=0.071 Score=54.13 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=37.2
Q ss_pred HHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHh--h----cccceEEeeechhcccccChHHHH
Q 042374 69 VKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQIS--R----HFQGKCFMANVREESNKMGAIHVR 130 (714)
Q Consensus 69 l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~--~----~f~~~~~~~~~~~~~~~~~~~~~~ 130 (714)
|.++|..+=....++-|+|.+|+|||+|+..++-... . .-..++|++ ....+...++.
T Consensus 115 LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId----TE~tF~peRl~ 178 (344)
T PLN03187 115 LDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID----TEGTFRPDRIV 178 (344)
T ss_pred HHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE----cCCCCCHHHHH
Confidence 4444433324567888999999999999999875332 1 124678887 44445555543
No 467
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.22 E-value=0.016 Score=53.33 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.4
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHh
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
++|.+.|++|+||||+|+++.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988653
No 468
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.20 E-value=0.015 Score=51.74 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=23.7
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhhcc
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISRHF 108 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~~f 108 (714)
+.|.++|+.|+||||+.+.+++...-+|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3578999999999999999998765554
No 469
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.20 E-value=0.028 Score=52.82 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=28.4
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEe
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFM 114 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 114 (714)
.+..+|+|+|++|+||||+|+.+.......-...+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3567999999999999999999998764432334454
No 470
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.17 E-value=0.016 Score=53.01 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=23.4
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
..+|+|-||=|+||||||+.++++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999998765
No 471
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.16 E-value=0.13 Score=49.39 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=22.1
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
+..+++|+|..|.|||||++.++..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999863
No 472
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.16 E-value=0.022 Score=59.54 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=36.6
Q ss_pred CCcccchhhHHHHHhhhcc-------c-----C--CCeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 57 DGFVGLNSRIEEVKSLLCL-------E-----S--RDVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~-------~-----~--~~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
.++||.+..++.+...+.. . + -....+.++|++|+|||++|+.++.....
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV 134 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4589999988887554411 0 0 12356889999999999999999976643
No 473
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=95.16 E-value=0.085 Score=58.30 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.6
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+...++|+|+.|.|||||++.+..
T Consensus 347 ~G~~~~ivG~sGsGKSTL~~ll~g 370 (529)
T TIGR02857 347 PGERVALVGPSGAGKSTLLNLLLG 370 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999985
No 474
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.16 E-value=0.36 Score=51.45 Aligned_cols=56 Identities=21% Similarity=0.259 Sum_probs=40.1
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHh-hcccceEEeeechhcccccChHHHHHHHHHHHhCC
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQIS-RHFQGKCFMANVREESNKMGAIHVRDEVISQVLGD 140 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (714)
...++.|-|.+|+|||++|..++..+. .+-..++|+ +-.....++...++....+.
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~f------SlEm~~~~l~~Rl~~~~~~v 249 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFF------SLEMSAEQLGERLLASKSGI 249 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEE------ECCCCHHHHHHHHHHHHcCC
Confidence 345888999999999999999997654 333345555 34556777888887765543
No 475
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=95.15 E-value=0.059 Score=61.60 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.6
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+...++|+|..|.|||||++.++.
T Consensus 482 ~G~~vaivG~sGsGKSTL~~ll~g 505 (694)
T TIGR01846 482 PGEFIGIVGPSGSGKSTLTKLLQR 505 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999999986
No 476
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=95.15 E-value=0.058 Score=61.90 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.5
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+...++|+|..|.|||||++.+..
T Consensus 499 ~G~~vaIvG~SGsGKSTLlklL~g 522 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKSTLAKLLVG 522 (708)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999999985
No 477
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.15 E-value=0.27 Score=49.28 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=22.8
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
+..++++.|+.|.|||||.+.++..+
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~ 55 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLL 55 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 45699999999999999999999643
No 478
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.15 E-value=0.045 Score=52.87 Aligned_cols=47 Identities=21% Similarity=0.334 Sum_probs=36.9
Q ss_pred HHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceE
Q 042374 66 IEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKC 112 (714)
Q Consensus 66 ~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~ 112 (714)
-.++...+....+...+|+|.|.||+|||||.-++..++.++-..+.
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVa 83 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVA 83 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEE
Confidence 35566666667778899999999999999999999987766544333
No 479
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.15 E-value=0.029 Score=61.43 Aligned_cols=52 Identities=19% Similarity=0.303 Sum_probs=43.5
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
.++..+.|.+..+.|.++.........+|.|+|++|+||||+|+.++.....
T Consensus 367 ~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 367 EIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 5677788888888888887666666779999999999999999999987754
No 480
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.14 E-value=0.15 Score=53.37 Aligned_cols=41 Identities=29% Similarity=0.377 Sum_probs=32.0
Q ss_pred hhHHHHHhhhc-----ccCCCeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 64 SRIEEVKSLLC-----LESRDVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 64 ~~~~~l~~~l~-----~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
+-++++..||. ...-+.++..|.|++|+||||-++.++...
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 34667777776 334456799999999999999999999753
No 481
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.14 E-value=0.01 Score=30.47 Aligned_cols=17 Identities=53% Similarity=0.751 Sum_probs=8.0
Q ss_pred CCCCEEECCCCCCcccc
Q 042374 645 SSLEYLDLSGNDFESLP 661 (714)
Q Consensus 645 ~~L~~L~L~~n~l~~lp 661 (714)
++|+.|+|++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 35666666666666554
No 482
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.13 E-value=0.084 Score=50.37 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=21.8
Q ss_pred EEEEEccCchhHHHHHHHHHHHHh
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
+|+|.|.+|+||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999998765
No 483
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.13 E-value=0.17 Score=56.65 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.8
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
.++|+++|+.|+||||.+.+++...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 5799999999999999999999765
No 484
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.12 E-value=0.21 Score=50.43 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=22.2
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
.+..+++|.|+.|.|||||.+.++.
T Consensus 26 ~~Gei~~l~G~NGaGKTTLl~~l~G 50 (301)
T TIGR03522 26 QKGRIVGFLGPNGAGKSTTMKIITG 50 (301)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhC
Confidence 3456899999999999999999985
No 485
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.11 E-value=0.017 Score=50.20 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=21.6
Q ss_pred EEEEEccCchhHHHHHHHHHHHHh
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
+|.|.|++|+||||+|+.+++...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 688999999999999999998653
No 486
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=95.09 E-value=0.059 Score=58.40 Aligned_cols=48 Identities=33% Similarity=0.512 Sum_probs=38.1
Q ss_pred CCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHH
Q 042374 56 LDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
...++|....++++.+.+..-......|.|.|..|+||+.+|+.+.+.
T Consensus 211 f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 211 LDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHh
Confidence 345899999988888777532333456889999999999999999874
No 487
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.08 E-value=0.015 Score=50.81 Aligned_cols=25 Identities=20% Similarity=0.483 Sum_probs=21.4
Q ss_pred EEEEccCchhHHHHHHHHHHHHhhc
Q 042374 83 VGIWGMGGIGKTTIASAVFHQISRH 107 (714)
Q Consensus 83 v~i~G~~GiGKTtLa~~~~~~~~~~ 107 (714)
|+|+|+.|+|||||++.++......
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 6899999999999999999765443
No 488
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.07 E-value=0.11 Score=48.27 Aligned_cols=21 Identities=33% Similarity=0.112 Sum_probs=18.9
Q ss_pred EEEEEccCchhHHHHHHHHHH
Q 042374 82 IVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~ 102 (714)
++.|.|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999984
No 489
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.07 E-value=0.019 Score=51.98 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=20.7
Q ss_pred EEEEccCchhHHHHHHHHHHHHhh
Q 042374 83 VGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 83 v~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
|.|.|.+|+|||||+++++..+++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999997754
No 490
>PRK14526 adenylate kinase; Provisional
Probab=95.06 E-value=0.068 Score=50.46 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.6
Q ss_pred EEEEccCchhHHHHHHHHHHHH
Q 042374 83 VGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 83 v~i~G~~GiGKTtLa~~~~~~~ 104 (714)
+.|+|++|+||||+|+.++...
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998654
No 491
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.05 E-value=0.045 Score=50.92 Aligned_cols=33 Identities=21% Similarity=0.115 Sum_probs=26.6
Q ss_pred EEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 83 VGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 83 v~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
+.|.|++|+|||+||..++......-..++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 679999999999999999886554445677765
No 492
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.05 E-value=0.022 Score=49.72 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=22.5
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
.++++|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999999888765
No 493
>PRK13949 shikimate kinase; Provisional
Probab=95.05 E-value=0.017 Score=52.50 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.7
Q ss_pred EEEEEccCchhHHHHHHHHHHHHh
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
.|.|+|++|.||||+++.++....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 494
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.04 E-value=0.014 Score=57.49 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=21.0
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
.+-|.++|+.|+|||++++.+..+.
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCS
T ss_pred CCcEEEECCCCCchhHHHHhhhccC
Confidence 3457899999999999999987654
No 495
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.04 E-value=0.099 Score=54.06 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=22.3
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
..+++++|++|+||||++.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999754
No 496
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.01 E-value=0.18 Score=47.25 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=20.0
Q ss_pred EEEEccCchhHHHHHHHHHHHH
Q 042374 83 VGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 83 v~i~G~~GiGKTtLa~~~~~~~ 104 (714)
|.|.|++|+||||+|+.++.+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998763
No 497
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.99 E-value=0.012 Score=32.57 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=14.1
Q ss_pred cccEeecccCcccccccCcccc
Q 042374 690 SLKWLDASNCERLQTFPEISSY 711 (714)
Q Consensus 690 ~L~~L~l~~c~~l~~lp~~~~~ 711 (714)
+|++|++++| .++.+|..+++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 4677777777 66677766654
No 498
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.99 E-value=0.037 Score=52.26 Aligned_cols=22 Identities=27% Similarity=0.166 Sum_probs=20.6
Q ss_pred EEEEEEccCchhHHHHHHHHHH
Q 042374 81 RIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
.+++|.|+.|.||||+.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999984
No 499
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.99 E-value=0.12 Score=55.83 Aligned_cols=134 Identities=18% Similarity=0.201 Sum_probs=68.8
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhc--------ccceEEeeechhc-ccccCh------------HHHHHHHHHHHh
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRH--------FQGKCFMANVREE-SNKMGA------------IHVRDEVISQVL 138 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~--------f~~~~~~~~~~~~-~~~~~~------------~~~~~~~~~~~~ 138 (714)
...|+|+|+.|+|||||.+.+....... --.+.|+..-... .....+ ...++..+..+.
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 3478999999999999999997643221 1112222221110 011111 222333333321
Q ss_pred CCCCCc------ccchhhH-HHHHHHhcCCcEEEEEeCCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCChhHHHhcCCC
Q 042374 139 GDKNLK------IGTLVIH-QNIRKRLRQVKMLIVLDAVHDG--FTQLESLAGELDKFTTGSRIIITTRDKQVLDKCGVN 209 (714)
Q Consensus 139 ~~~~~~------~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~--~~~~~~l~~~l~~~~~gs~IliTtR~~~v~~~~~~~ 209 (714)
=..... .+.-+.. -.+...+..++=++|||+-.+. .+..+.|...+.. -+|+ ||+.|.++.....+. .
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~-f~Gt-vl~VSHDr~Fl~~va-~ 504 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD-FEGT-VLLVSHDRYFLDRVA-T 504 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh-CCCe-EEEEeCCHHHHHhhc-c
Confidence 111000 1111112 2344455678899999998665 2334444444332 3454 888899998877653 4
Q ss_pred eEEecCC
Q 042374 210 YVYEVEG 216 (714)
Q Consensus 210 ~~~~l~~ 216 (714)
.++.+.+
T Consensus 505 ~i~~~~~ 511 (530)
T COG0488 505 RIWLVED 511 (530)
T ss_pred eEEEEcC
Confidence 5555553
No 500
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.98 E-value=0.22 Score=52.35 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=23.4
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
+.++.++|.+|+||||.|..++....
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67999999999999999999998754
Done!