Query 042374
Match_columns 714
No_of_seqs 430 out of 4624
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 09:23:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 9.6E-38 3.3E-42 341.7 17.4 293 54-360 125-448 (549)
2 3rgz_A Protein brassinosteroid 100.0 1.1E-30 3.9E-35 299.0 21.7 327 384-710 319-725 (768)
3 3rgz_A Protein brassinosteroid 100.0 2E-30 6.8E-35 297.0 21.5 330 384-713 248-680 (768)
4 1vt4_I APAF-1 related killer D 100.0 1.6E-30 5.5E-35 286.7 16.0 234 58-320 129-388 (1221)
5 3t6q_A CD180 antigen; protein- 100.0 1.9E-28 6.5E-33 274.4 30.6 264 332-604 39-365 (606)
6 3sfz_A APAF-1, apoptotic pepti 100.0 9E-30 3.1E-34 309.8 19.9 264 43-320 110-396 (1249)
7 4eco_A Uncharacterized protein 100.0 4E-29 1.4E-33 279.5 22.8 319 377-707 201-583 (636)
8 3vq2_A TLR4, TOLL-like recepto 100.0 3.4E-28 1.2E-32 272.4 28.6 225 473-701 306-557 (606)
9 3t6q_A CD180 antigen; protein- 100.0 6.2E-28 2.1E-32 270.3 29.6 256 430-700 257-534 (606)
10 4ecn_A Leucine-rich repeat pro 100.0 2.3E-28 8E-33 277.4 23.7 318 377-700 443-838 (876)
11 4ecn_A Leucine-rich repeat pro 100.0 4.5E-28 1.5E-32 275.1 25.3 337 343-703 441-873 (876)
12 4eco_A Uncharacterized protein 100.0 6.6E-29 2.2E-33 277.8 17.9 303 394-712 194-565 (636)
13 1z6t_A APAF-1, apoptotic prote 100.0 3.8E-28 1.3E-32 270.4 20.5 250 55-320 122-396 (591)
14 4fmz_A Internalin; leucine ric 100.0 4.4E-27 1.5E-31 243.9 26.2 272 405-700 66-344 (347)
15 3vq2_A TLR4, TOLL-like recepto 100.0 5.4E-27 1.9E-31 262.6 28.4 235 446-685 303-562 (606)
16 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-27 5.9E-32 261.4 23.4 334 340-702 35-481 (520)
17 3v47_A TOLL-like receptor 5B a 100.0 2.3E-27 7.9E-32 255.9 23.2 334 350-706 30-412 (455)
18 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-26 4.5E-31 268.2 28.6 338 340-699 38-461 (844)
19 2z81_A CD282 antigen, TOLL-lik 99.9 2.7E-27 9.4E-32 261.8 19.5 355 340-706 40-514 (549)
20 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.7E-26 1.3E-30 252.8 28.0 326 350-702 52-510 (562)
21 1o6v_A Internalin A; bacterial 99.9 3.1E-26 1.1E-30 247.1 26.3 319 346-701 64-387 (466)
22 2z63_A TOLL-like receptor 4, v 99.9 1.2E-26 4.2E-31 258.0 23.5 166 332-506 34-209 (570)
23 2id5_A Lingo-1, leucine rich r 99.9 2.2E-26 7.6E-31 249.5 24.9 290 380-683 29-335 (477)
24 4fmz_A Internalin; leucine ric 99.9 7.1E-26 2.4E-30 234.8 26.8 300 346-681 40-346 (347)
25 3o6n_A APL1; leucine-rich repe 99.9 6.2E-26 2.1E-30 239.1 25.9 298 349-680 44-351 (390)
26 3oja_B Anopheles plasmodium-re 99.9 7E-26 2.4E-30 251.9 26.1 273 384-680 76-357 (597)
27 3v47_A TOLL-like receptor 5B a 99.9 6.6E-26 2.3E-30 244.5 25.0 333 333-686 37-413 (455)
28 2id5_A Lingo-1, leucine rich r 99.9 1.1E-25 3.9E-30 243.9 26.8 302 386-701 14-332 (477)
29 1jl5_A Outer protein YOPM; leu 99.9 3.8E-25 1.3E-29 236.2 29.2 326 350-712 71-421 (454)
30 1ziw_A TOLL-like receptor 3; i 99.9 3.8E-25 1.3E-29 251.1 30.3 350 340-711 39-478 (680)
31 2z7x_B TOLL-like receptor 1, v 99.9 5.5E-26 1.9E-30 249.4 22.3 141 353-509 3-150 (520)
32 2z63_A TOLL-like receptor 4, v 99.9 1.9E-25 6.5E-30 248.4 25.4 198 496-707 324-536 (570)
33 2z81_A CD282 antigen, TOLL-lik 99.9 2.6E-25 9E-30 245.9 24.3 288 381-680 24-422 (549)
34 1o6v_A Internalin A; bacterial 99.9 4.7E-25 1.6E-29 237.9 25.6 321 347-706 43-370 (466)
35 3j0a_A TOLL-like receptor 5; m 99.9 4.9E-25 1.7E-29 255.0 27.2 312 348-686 22-398 (844)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4E-25 1.4E-29 244.6 24.4 328 349-708 30-491 (562)
37 3o6n_A APL1; leucine-rich repe 99.9 5.8E-25 2E-29 231.6 23.7 296 383-701 45-351 (390)
38 1ziw_A TOLL-like receptor 3; i 99.9 1.7E-24 5.8E-29 245.7 28.2 315 384-706 50-422 (680)
39 3bz5_A Internalin-J, INLJ; leu 99.9 7.3E-24 2.5E-28 226.5 30.4 328 345-708 37-393 (457)
40 1jl5_A Outer protein YOPM; leu 99.9 3.6E-24 1.2E-28 228.7 27.2 309 350-710 111-437 (454)
41 3bz5_A Internalin-J, INLJ; leu 99.9 3.6E-24 1.2E-28 228.8 26.3 300 384-707 43-356 (457)
42 3oja_B Anopheles plasmodium-re 99.9 1.4E-24 4.9E-29 241.3 23.5 294 384-700 52-356 (597)
43 1ogq_A PGIP-2, polygalacturona 99.9 1.8E-25 6.2E-30 227.3 14.1 246 427-706 50-308 (313)
44 2ft3_A Biglycan; proteoglycan, 99.9 1.3E-23 4.4E-28 216.1 23.4 274 384-678 34-330 (332)
45 1xku_A Decorin; proteoglycan, 99.9 2.8E-23 9.6E-28 213.4 24.7 215 385-605 33-256 (330)
46 2ft3_A Biglycan; proteoglycan, 99.9 4.8E-23 1.6E-27 211.8 24.5 256 406-702 34-307 (332)
47 3g06_A SSPH2 (leucine-rich rep 99.9 6.1E-23 2.1E-27 225.6 23.2 241 405-686 61-302 (622)
48 1ogq_A PGIP-2, polygalacturona 99.9 2.2E-24 7.5E-29 219.2 10.7 244 406-685 51-308 (313)
49 1xku_A Decorin; proteoglycan, 99.9 5.9E-22 2E-26 203.5 25.7 287 351-679 32-330 (330)
50 4g8a_A TOLL-like receptor 4; l 99.9 5.4E-22 1.9E-26 223.7 27.6 349 332-701 58-579 (635)
51 4fcg_A Uncharacterized protein 99.9 2.5E-23 8.7E-28 212.6 14.8 222 405-676 81-309 (328)
52 4g8a_A TOLL-like receptor 4; l 99.9 1.6E-21 5.3E-26 219.9 27.5 352 350-711 52-564 (635)
53 4fcg_A Uncharacterized protein 99.9 9.8E-23 3.4E-27 208.3 14.8 214 426-699 80-311 (328)
54 2z80_A TOLL-like receptor 2, v 99.9 2.4E-22 8.1E-27 208.5 17.9 264 387-685 35-318 (353)
55 3g06_A SSPH2 (leucine-rich rep 99.9 1.7E-21 6E-26 214.1 23.4 260 406-709 41-304 (622)
56 2z80_A TOLL-like receptor 2, v 99.9 1.1E-22 3.9E-27 210.9 12.7 265 406-706 32-318 (353)
57 2z66_A Variable lymphocyte rec 99.9 1.1E-21 3.8E-26 199.2 19.6 238 387-683 11-263 (306)
58 2z66_A Variable lymphocyte rec 99.9 5.9E-22 2E-26 201.2 16.8 249 380-687 25-293 (306)
59 3zyi_A Leucine-rich repeat-con 99.9 5.4E-21 1.9E-25 205.2 22.5 237 386-638 57-302 (452)
60 3o53_A Protein LRIM1, AGAP0063 99.9 7E-23 2.4E-27 208.8 7.1 232 406-681 11-250 (317)
61 1ozn_A Reticulon 4 receptor; N 99.9 4.1E-21 1.4E-25 192.8 19.7 199 427-658 32-238 (285)
62 3zyj_A Leucine-rich repeat-con 99.9 5.7E-21 2E-25 204.3 21.6 239 385-638 45-291 (440)
63 3zyj_A Leucine-rich repeat-con 99.9 1.1E-20 3.6E-25 202.2 23.6 238 406-680 44-291 (440)
64 1ozn_A Reticulon 4 receptor; N 99.9 3.2E-21 1.1E-25 193.5 17.8 220 386-639 14-238 (285)
65 3zyi_A Leucine-rich repeat-con 99.9 9.2E-21 3.1E-25 203.4 22.4 239 406-681 55-303 (452)
66 3o53_A Protein LRIM1, AGAP0063 99.9 1.3E-22 4.4E-27 206.8 6.0 237 403-684 32-278 (317)
67 1z7x_W Ribonuclease inhibitor; 99.8 1.9E-23 6.4E-28 225.7 -3.1 345 344-702 22-440 (461)
68 3oja_A Leucine-rich immune mol 99.8 4E-21 1.4E-25 207.2 11.9 228 426-697 33-270 (487)
69 1z7x_W Ribonuclease inhibitor; 99.8 4.6E-23 1.6E-27 222.6 -4.0 333 350-700 3-409 (461)
70 3oja_A Leucine-rich immune mol 99.8 9.9E-21 3.4E-25 204.1 10.9 229 403-676 32-270 (487)
71 1wwl_A Monocyte differentiatio 99.8 2E-21 6.9E-26 197.5 4.7 245 405-681 43-309 (312)
72 2z62_A TOLL-like receptor 4, v 99.8 5.3E-19 1.8E-23 176.4 19.9 116 537-685 120-241 (276)
73 1wwl_A Monocyte differentiatio 99.8 1.4E-21 5E-26 198.5 0.9 240 426-700 42-307 (312)
74 1p9a_G Platelet glycoprotein I 99.8 1.1E-18 3.7E-23 174.8 20.3 196 426-658 9-208 (290)
75 3rfs_A Internalin B, repeat mo 99.8 2.9E-19 1E-23 177.6 14.9 221 406-691 20-245 (272)
76 2o6q_A Variable lymphocyte rec 99.8 2.6E-18 9E-23 170.6 20.4 113 537-681 105-218 (270)
77 3rfs_A Internalin B, repeat mo 99.8 2.2E-19 7.6E-24 178.5 12.1 210 403-671 39-249 (272)
78 2z62_A TOLL-like receptor 4, v 99.8 3.5E-18 1.2E-22 170.5 19.2 203 427-701 28-236 (276)
79 1h6u_A Internalin H; cell adhe 99.8 1.6E-18 5.6E-23 175.3 15.2 209 407-680 21-229 (308)
80 1p9a_G Platelet glycoprotein I 99.8 1E-17 3.5E-22 167.6 18.5 196 406-639 11-208 (290)
81 2o6q_A Variable lymphocyte rec 99.8 1.8E-17 6.2E-22 164.5 20.0 104 521-637 112-216 (270)
82 2xwt_C Thyrotropin receptor; s 99.8 2.9E-18 9.9E-23 167.0 13.8 196 427-701 31-238 (239)
83 1h6u_A Internalin H; cell adhe 99.7 5.5E-18 1.9E-22 171.4 13.4 192 403-639 39-230 (308)
84 4glp_A Monocyte differentiatio 99.7 2.3E-18 8E-23 174.7 9.3 198 426-680 90-306 (310)
85 2xwt_C Thyrotropin receptor; s 99.7 1.3E-17 4.6E-22 162.2 14.3 137 537-708 76-223 (239)
86 4glp_A Monocyte differentiatio 99.7 5.2E-18 1.8E-22 172.1 10.2 201 449-701 90-306 (310)
87 2ast_B S-phase kinase-associat 99.7 1.5E-18 5E-23 178.8 4.7 226 427-688 70-313 (336)
88 2ca6_A RAN GTPase-activating p 99.7 1.1E-18 3.7E-23 183.3 2.8 229 426-684 31-319 (386)
89 3m19_A Variable lymphocyte rec 99.7 1.2E-16 4.1E-21 156.6 16.5 172 498-683 15-194 (251)
90 4ay9_X Follicle-stimulating ho 99.7 8.9E-17 3E-21 165.9 16.2 207 386-594 12-231 (350)
91 3ogk_B Coronatine-insensitive 99.7 6.5E-19 2.2E-23 196.5 0.0 337 346-700 108-524 (592)
92 4ay9_X Follicle-stimulating ho 99.7 5.9E-17 2E-21 167.2 13.9 235 408-677 12-255 (350)
93 2ast_B S-phase kinase-associat 99.7 2.2E-18 7.5E-23 177.5 3.0 228 405-665 70-314 (336)
94 3m19_A Variable lymphocyte rec 99.7 3.2E-16 1.1E-20 153.6 16.9 128 518-658 59-192 (251)
95 2ca6_A RAN GTPase-activating p 99.7 1.7E-18 5.7E-23 181.8 0.3 236 446-702 28-316 (386)
96 1h6t_A Internalin B; cell adhe 99.7 2.7E-16 9.2E-21 157.5 13.9 147 406-604 25-171 (291)
97 3cvr_A Invasion plasmid antige 99.7 4.3E-16 1.5E-20 169.0 16.5 189 428-686 60-248 (571)
98 2o6s_A Variable lymphocyte rec 99.7 3.8E-16 1.3E-20 148.4 13.7 157 518-710 28-186 (208)
99 3goz_A Leucine-rich repeat-con 99.7 1.5E-17 5.1E-22 172.7 3.0 250 410-683 3-299 (362)
100 3ogk_B Coronatine-insensitive 99.6 1.2E-17 4.3E-22 186.1 0.9 334 347-698 161-547 (592)
101 2p1m_B Transport inhibitor res 99.6 1.7E-18 5.9E-23 193.2 -7.3 336 346-701 101-518 (594)
102 3goz_A Leucine-rich repeat-con 99.6 1E-17 3.5E-22 173.9 -1.1 248 388-659 3-298 (362)
103 1m9s_A Internalin B; cell inva 99.6 1.5E-15 5.2E-20 166.7 15.4 78 405-485 21-98 (605)
104 2o6s_A Variable lymphocyte rec 99.6 3.4E-15 1.2E-19 141.7 14.2 145 477-637 10-159 (208)
105 3cvr_A Invasion plasmid antige 99.6 7.6E-15 2.6E-19 159.2 16.8 188 351-589 60-254 (571)
106 2v9t_B SLIT homolog 2 protein 99.6 4.1E-15 1.4E-19 142.1 13.0 143 523-680 16-164 (220)
107 1h6t_A Internalin B; cell adhe 99.6 2.3E-15 8E-20 150.6 11.5 173 403-605 44-216 (291)
108 1m9s_A Internalin B; cell inva 99.6 6.9E-15 2.4E-19 161.5 15.0 175 403-607 41-215 (605)
109 3e6j_A Variable lymphocyte rec 99.6 9E-15 3.1E-19 140.8 13.8 153 518-685 19-176 (229)
110 4ezg_A Putative uncharacterize 99.6 2.8E-15 9.6E-20 140.8 9.2 145 518-679 44-192 (197)
111 2v70_A SLIT-2, SLIT homolog 2 99.6 1.4E-14 4.7E-19 138.5 13.1 131 519-681 33-166 (220)
112 2p1m_B Transport inhibitor res 99.6 4.8E-17 1.6E-21 181.5 -5.6 345 344-701 60-493 (594)
113 1dce_A Protein (RAB geranylger 99.6 3.4E-17 1.2E-21 178.8 -7.2 134 520-695 425-566 (567)
114 1w5s_A Origin recognition comp 99.6 7.9E-14 2.7E-18 147.7 18.3 249 55-314 20-321 (412)
115 2xot_A Amphoterin-induced prot 99.5 1.3E-14 4.4E-19 150.3 11.5 168 500-681 21-202 (361)
116 4ezg_A Putative uncharacterize 99.5 2E-14 6.9E-19 134.9 11.2 151 426-638 43-193 (197)
117 2xot_A Amphoterin-induced prot 99.5 3.1E-14 1.1E-18 147.4 13.6 169 477-658 21-202 (361)
118 1xeu_A Internalin C; cellular 99.5 1.8E-14 6E-19 141.8 10.5 142 518-681 41-185 (263)
119 2v9t_B SLIT homolog 2 protein 99.5 1.4E-13 4.9E-18 131.4 14.1 58 427-484 32-90 (220)
120 2v70_A SLIT-2, SLIT homolog 2 99.5 1.3E-13 4.5E-18 131.6 13.4 40 537-576 125-164 (220)
121 2qen_A Walker-type ATPase; unk 99.5 4.2E-13 1.4E-17 138.7 18.0 197 55-265 10-249 (350)
122 1xeu_A Internalin C; cellular 99.5 5.1E-14 1.7E-18 138.5 9.9 173 403-606 17-189 (263)
123 2qby_B CDC6 homolog 3, cell di 99.5 2.9E-12 1E-16 134.2 23.3 239 56-312 19-295 (384)
124 3e6j_A Variable lymphocyte rec 99.5 5.3E-13 1.8E-17 128.4 15.8 69 537-606 84-152 (229)
125 2fna_A Conserved hypothetical 99.5 7.1E-13 2.4E-17 137.4 17.4 240 55-312 11-301 (357)
126 2ell_A Acidic leucine-rich nuc 99.5 1.5E-13 5.2E-18 125.4 10.2 130 518-680 24-159 (168)
127 2je0_A Acidic leucine-rich nuc 99.4 2.8E-13 9.7E-18 120.8 10.2 128 517-677 16-149 (149)
128 4b8c_D Glucose-repressible alc 99.4 6.4E-14 2.2E-18 157.9 6.0 147 534-699 217-369 (727)
129 1dce_A Protein (RAB geranylger 99.4 2.9E-15 9.8E-20 163.6 -5.3 213 403-675 347-567 (567)
130 2qby_A CDC6 homolog 1, cell di 99.4 5.3E-12 1.8E-16 132.4 18.9 247 55-313 18-298 (386)
131 4b8c_D Glucose-repressible alc 99.4 1.3E-13 4.6E-18 155.4 5.8 179 519-712 174-364 (727)
132 2v1u_A Cell division control p 99.4 1.3E-11 4.6E-16 129.3 20.0 244 55-313 17-302 (387)
133 2ell_A Acidic leucine-rich nuc 99.4 1.2E-12 4.1E-17 119.3 9.9 135 539-709 22-166 (168)
134 1w8a_A SLIT protein; signaling 99.4 2E-12 6.7E-17 120.6 9.9 124 520-658 10-139 (192)
135 1njg_A DNA polymerase III subu 99.3 4.5E-12 1.5E-16 123.8 11.5 199 55-265 21-231 (250)
136 1a9n_A U2A', U2A'; complex (nu 99.3 2.9E-12 9.9E-17 117.7 8.8 130 519-681 20-153 (176)
137 2o6r_A Variable lymphocyte rec 99.3 8.5E-12 2.9E-16 114.7 11.8 132 520-685 9-141 (177)
138 2je0_A Acidic leucine-rich nuc 99.3 3.3E-12 1.1E-16 113.8 8.0 70 537-606 60-130 (149)
139 1fnn_A CDC6P, cell division co 99.3 8.8E-11 3E-15 123.1 19.5 245 55-314 15-301 (389)
140 2wfh_A SLIT homolog 2 protein 99.3 1.4E-11 4.9E-16 114.6 11.9 122 521-658 13-139 (193)
141 1w8a_A SLIT protein; signaling 99.3 4.5E-11 1.5E-15 111.3 13.4 109 428-580 30-141 (192)
142 2wfh_A SLIT homolog 2 protein 99.3 2.3E-11 7.9E-16 113.2 11.2 110 517-639 30-139 (193)
143 2chg_A Replication factor C sm 99.2 4E-10 1.4E-14 108.0 17.8 186 55-261 15-203 (226)
144 1a9n_A U2A', U2A'; complex (nu 99.2 4.2E-11 1.5E-15 109.8 9.8 115 469-606 14-130 (176)
145 3sb4_A Hypothetical leucine ri 99.2 6.4E-11 2.2E-15 120.8 11.6 180 426-608 100-316 (329)
146 1ds9_A Outer arm dynein; leuci 99.2 6.1E-13 2.1E-17 124.9 -3.6 112 529-658 36-153 (198)
147 1ds9_A Outer arm dynein; leuci 99.2 3E-13 1E-17 127.0 -6.9 142 538-695 15-180 (198)
148 2o6r_A Variable lymphocyte rec 99.1 2.7E-10 9.4E-15 104.5 12.4 92 517-608 27-119 (177)
149 3sb4_A Hypothetical leucine ri 99.1 2.6E-10 8.9E-15 116.3 11.2 238 404-679 48-308 (329)
150 1sxj_B Activator 1 37 kDa subu 99.1 1.1E-09 3.7E-14 111.5 14.7 185 55-262 19-210 (323)
151 3g39_A Variable lymphocyte rec 99.1 4.3E-10 1.5E-14 102.2 9.7 87 519-607 10-96 (170)
152 2r9u_A Variable lymphocyte rec 99.0 5.7E-10 2E-14 101.7 9.8 85 521-607 15-99 (174)
153 3te6_A Regulatory protein SIR3 99.0 8.2E-09 2.8E-13 102.1 17.6 169 59-232 22-213 (318)
154 4fdw_A Leucine rich hypothetic 99.0 3.1E-08 1.1E-12 103.0 21.6 37 641-679 319-356 (401)
155 4fdw_A Leucine rich hypothetic 99.0 2.9E-08 9.9E-13 103.3 20.7 142 519-679 227-381 (401)
156 2r9u_A Variable lymphocyte rec 98.9 2.6E-09 8.9E-14 97.3 10.2 100 543-658 14-118 (174)
157 3jrn_A AT1G72930 protein; TIR 98.9 1.3E-09 4.4E-14 96.5 6.2 53 2-54 94-147 (176)
158 3g39_A Variable lymphocyte rec 98.9 4.7E-09 1.6E-13 95.3 10.0 101 542-658 10-115 (170)
159 3ozi_A L6TR; plant TIR domain, 98.9 1.1E-09 3.7E-14 98.6 4.6 53 2-54 122-175 (204)
160 1iqp_A RFCS; clamp loader, ext 98.9 1.6E-08 5.4E-13 103.0 13.9 183 55-261 23-211 (327)
161 4fs7_A Uncharacterized protein 98.8 3.2E-07 1.1E-11 95.8 22.4 304 338-678 59-376 (394)
162 3un9_A NLR family member X1; l 98.8 4.8E-10 1.7E-14 115.6 0.8 157 516-681 70-252 (372)
163 1jr3_A DNA polymerase III subu 98.8 5.5E-08 1.9E-12 101.0 15.9 196 55-262 14-221 (373)
164 3un9_A NLR family member X1; l 98.8 3.2E-10 1.1E-14 117.0 -1.6 154 496-658 71-252 (372)
165 2chq_A Replication factor C sm 98.8 6.2E-08 2.1E-12 98.2 15.4 179 56-260 16-202 (319)
166 2ifg_A High affinity nerve gro 98.7 1.4E-08 4.6E-13 104.4 8.5 84 523-607 13-98 (347)
167 1jbk_A CLPB protein; beta barr 98.7 7.3E-08 2.5E-12 89.6 12.8 50 55-106 20-69 (195)
168 3uk6_A RUVB-like 2; hexameric 98.6 5.5E-07 1.9E-11 93.1 17.1 202 56-261 43-302 (368)
169 1hqc_A RUVB; extended AAA-ATPa 98.6 1.4E-07 4.8E-12 95.7 12.2 176 55-264 10-213 (324)
170 3h4m_A Proteasome-activating n 98.6 1.4E-07 4.8E-12 93.8 11.2 173 56-254 16-222 (285)
171 2ra8_A Uncharacterized protein 98.6 4.1E-08 1.4E-12 100.2 6.7 58 624-681 250-320 (362)
172 1sxj_A Activator 1 95 kDa subu 98.6 4.2E-07 1.4E-11 98.0 14.6 190 55-261 37-252 (516)
173 3bos_A Putative DNA replicatio 98.6 1.3E-07 4.6E-12 91.3 9.7 173 56-261 27-216 (242)
174 2ifg_A High affinity nerve gro 98.6 8.9E-08 3.1E-12 98.3 8.6 100 544-658 11-116 (347)
175 2z4s_A Chromosomal replication 98.6 3E-07 1E-11 96.8 12.5 180 57-259 105-303 (440)
176 1sxj_D Activator 1 41 kDa subu 98.6 1.2E-06 4.2E-11 89.9 16.9 191 55-259 35-232 (353)
177 1sxj_E Activator 1 40 kDa subu 98.6 7.5E-07 2.6E-11 91.6 15.0 195 56-259 13-234 (354)
178 4fs7_A Uncharacterized protein 98.5 4.5E-06 1.6E-10 87.0 20.2 223 426-673 161-393 (394)
179 2qz4_A Paraplegin; AAA+, SPG7, 98.5 8.3E-07 2.9E-11 86.9 13.7 177 56-256 5-215 (262)
180 1d2n_A N-ethylmaleimide-sensit 98.5 2E-06 6.9E-11 84.6 16.0 170 56-254 32-229 (272)
181 3eie_A Vacuolar protein sortin 98.5 1E-06 3.6E-11 88.9 14.0 174 56-254 17-219 (322)
182 3pfi_A Holliday junction ATP-d 98.5 1.2E-06 4E-11 89.5 13.0 173 55-261 27-226 (338)
183 3pvs_A Replication-associated 98.4 1.1E-06 3.8E-11 92.2 13.0 175 55-258 24-211 (447)
184 1l8q_A Chromosomal replication 98.4 2.4E-06 8.3E-11 86.4 14.9 178 56-257 10-203 (324)
185 2qp9_X Vacuolar protein sortin 98.4 3.4E-06 1.1E-10 86.2 15.3 174 55-255 49-253 (355)
186 1xwi_A SKD1 protein; VPS4B, AA 98.4 6.1E-06 2.1E-10 83.0 16.4 175 57-256 12-216 (322)
187 3syl_A Protein CBBX; photosynt 98.4 3E-06 1E-10 85.2 13.9 152 59-232 33-219 (309)
188 3d8b_A Fidgetin-like protein 1 98.4 3E-06 1E-10 86.7 13.9 182 55-261 82-294 (357)
189 3b9p_A CG5977-PA, isoform A; A 98.3 4.7E-06 1.6E-10 83.2 14.1 179 56-261 20-232 (297)
190 4gt6_A Cell surface protein; l 98.3 8.9E-05 3E-09 77.2 24.1 132 339-483 52-191 (394)
191 1a5t_A Delta prime, HOLB; zinc 98.3 1E-05 3.5E-10 81.9 16.1 183 63-262 8-205 (334)
192 4b4t_J 26S protease regulatory 98.3 5.3E-06 1.8E-10 84.1 13.2 173 57-256 148-355 (405)
193 3cf0_A Transitional endoplasmi 98.3 6E-06 2E-10 82.3 13.6 174 57-257 15-223 (301)
194 3vfd_A Spastin; ATPase, microt 98.3 1.2E-05 4.1E-10 83.5 15.2 181 56-261 114-325 (389)
195 3u61_B DNA polymerase accessor 98.2 9.4E-06 3.2E-10 82.1 13.9 177 55-258 24-212 (324)
196 4b4t_H 26S protease regulatory 98.2 1E-05 3.5E-10 83.1 13.9 172 57-255 209-415 (467)
197 2zan_A Vacuolar protein sortin 98.2 1.5E-05 5.2E-10 83.9 15.5 176 56-255 133-337 (444)
198 2p65_A Hypothetical protein PF 98.2 5.4E-06 1.9E-10 76.2 10.0 50 55-106 20-69 (187)
199 3n70_A Transport activator; si 98.2 1.3E-06 4.6E-11 76.5 5.3 47 58-104 2-48 (145)
200 4gt6_A Cell surface protein; l 98.2 6.1E-05 2.1E-09 78.4 18.8 104 560-679 260-368 (394)
201 4b4t_L 26S protease subunit RP 98.2 1E-05 3.6E-10 83.4 11.9 173 56-255 180-387 (437)
202 2ra8_A Uncharacterized protein 98.1 1.7E-06 5.7E-11 88.3 4.9 68 564-640 251-321 (362)
203 1sxj_C Activator 1 40 kDa subu 98.1 2.3E-05 7.8E-10 79.7 13.2 179 55-257 23-207 (340)
204 4b4t_M 26S protease regulatory 98.1 1.1E-05 3.6E-10 83.3 10.6 172 56-255 180-387 (434)
205 4h09_A Hypothetical leucine ri 98.1 0.00063 2.2E-08 70.3 23.7 123 537-676 213-341 (379)
206 4fcw_A Chaperone protein CLPB; 98.0 3.2E-05 1.1E-09 77.7 13.0 164 57-230 17-229 (311)
207 1io0_A Tropomodulin; LRR prote 98.0 7.6E-07 2.6E-11 81.7 0.8 117 536-680 31-163 (185)
208 4b4t_I 26S protease regulatory 98.0 1.9E-05 6.5E-10 80.3 10.4 171 57-255 182-388 (437)
209 2gno_A DNA polymerase III, gam 98.0 3.2E-05 1.1E-09 76.6 11.6 146 61-230 1-152 (305)
210 4b4t_K 26S protease regulatory 98.0 3.6E-05 1.2E-09 79.3 12.3 172 57-255 172-379 (428)
211 3hu3_A Transitional endoplasmi 98.0 2E-05 7E-10 83.4 10.6 173 56-254 203-406 (489)
212 1qvr_A CLPB protein; coiled co 98.0 1.1E-05 3.7E-10 92.6 9.1 154 55-230 168-345 (854)
213 3pxg_A Negative regulator of g 98.0 4.1E-05 1.4E-09 81.2 12.7 147 55-230 178-338 (468)
214 2bjv_A PSP operon transcriptio 98.0 3.1E-05 1.1E-09 75.7 10.7 49 57-105 6-54 (265)
215 1ofh_A ATP-dependent HSL prote 97.9 2.1E-05 7.4E-10 78.9 9.3 50 57-106 15-76 (310)
216 1ojl_A Transcriptional regulat 97.9 4.1E-05 1.4E-09 76.1 11.2 48 57-104 2-49 (304)
217 3ec2_A DNA replication protein 97.9 2.3E-05 7.8E-10 71.5 8.5 42 64-105 21-63 (180)
218 1r6b_X CLPA protein; AAA+, N-t 97.9 0.00013 4.4E-09 82.9 16.2 155 55-230 184-362 (758)
219 2c9o_A RUVB-like 1; hexameric 97.9 0.00043 1.5E-08 73.2 18.9 95 163-261 297-409 (456)
220 1in4_A RUVB, holliday junction 97.9 0.00012 4E-09 74.1 13.9 175 55-261 23-222 (334)
221 1io0_A Tropomodulin; LRR prote 97.9 4.3E-06 1.5E-10 76.6 2.8 86 517-602 35-136 (185)
222 3co5_A Putative two-component 97.9 2.8E-06 9.6E-11 74.2 1.3 48 57-104 4-51 (143)
223 2ce7_A Cell division protein F 97.8 8.2E-05 2.8E-09 78.1 11.6 173 57-255 16-221 (476)
224 2r62_A Cell division protease 97.8 9.5E-06 3.2E-10 79.6 4.3 153 56-230 10-196 (268)
225 3rw6_A Nuclear RNA export fact 97.8 6.3E-06 2.1E-10 79.4 2.6 53 643-696 194-258 (267)
226 3pxi_A Negative regulator of g 97.8 0.00017 5.7E-09 81.8 13.6 147 55-230 178-338 (758)
227 4h09_A Hypothetical leucine ri 97.8 0.0045 1.5E-07 63.7 23.5 114 530-660 228-347 (379)
228 2w58_A DNAI, primosome compone 97.7 7.9E-05 2.7E-09 69.3 9.1 60 56-115 24-89 (202)
229 1lv7_A FTSH; alpha/beta domain 97.7 0.00024 8.1E-09 69.0 12.7 152 56-230 11-195 (257)
230 2kjq_A DNAA-related protein; s 97.7 6.7E-05 2.3E-09 65.6 7.9 37 79-115 35-71 (149)
231 3e4g_A ATP synthase subunit S, 97.7 1.5E-05 5.2E-10 71.0 3.2 78 626-704 61-154 (176)
232 3pxi_A Negative regulator of g 97.7 0.00019 6.6E-09 81.3 12.0 150 57-230 491-675 (758)
233 3cf2_A TER ATPase, transitiona 97.6 6.1E-05 2.1E-09 83.8 7.0 174 57-257 204-409 (806)
234 3t15_A Ribulose bisphosphate c 97.5 0.00043 1.5E-08 68.4 11.2 29 79-107 35-63 (293)
235 1r6b_X CLPA protein; AAA+, N-t 97.4 0.00044 1.5E-08 78.5 11.1 161 57-230 458-666 (758)
236 2x8a_A Nuclear valosin-contain 97.4 0.0012 4.2E-08 64.2 12.3 151 57-230 10-191 (274)
237 2r44_A Uncharacterized protein 97.4 0.00092 3.1E-08 67.5 11.5 48 56-107 26-73 (331)
238 3m6a_A ATP-dependent protease 97.4 0.0013 4.6E-08 70.8 13.1 49 59-107 83-135 (543)
239 3e4g_A ATP synthase subunit S, 97.3 6.5E-05 2.2E-09 66.8 2.2 46 533-578 53-98 (176)
240 3rw6_A Nuclear RNA export fact 97.3 0.00011 3.7E-09 70.8 3.4 30 646-675 221-258 (267)
241 1ixz_A ATP-dependent metallopr 97.3 0.0025 8.4E-08 61.5 13.1 151 57-230 16-199 (254)
242 1iy2_A ATP-dependent metallopr 97.3 0.0017 5.9E-08 63.6 12.1 152 56-230 39-223 (278)
243 1um8_A ATP-dependent CLP prote 97.2 0.0012 4E-08 68.1 9.9 49 58-106 22-98 (376)
244 2dhr_A FTSH; AAA+ protein, hex 97.2 0.003 1E-07 66.7 13.0 172 55-255 29-236 (499)
245 1ypw_A Transitional endoplasmi 97.1 0.0015 5.3E-08 73.9 11.2 152 56-231 203-386 (806)
246 1qvr_A CLPB protein; coiled co 97.1 0.0015 5.3E-08 74.8 10.6 49 58-106 559-614 (854)
247 2qgz_A Helicase loader, putati 97.0 0.0012 4.2E-08 65.5 7.8 51 65-115 136-188 (308)
248 2cvh_A DNA repair and recombin 96.9 0.0031 1.1E-07 59.2 9.6 34 79-115 19-52 (220)
249 1jr3_D DNA polymerase III, del 96.8 0.024 8.1E-07 57.3 15.6 155 79-260 17-183 (343)
250 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.0021 7.1E-08 62.9 6.4 71 80-173 123-194 (331)
251 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0051 1.8E-07 58.3 8.7 37 79-115 22-58 (235)
252 1u0j_A DNA replication protein 96.6 0.0048 1.6E-07 58.7 8.1 27 78-104 102-128 (267)
253 1ye8_A Protein THEP1, hypothet 96.6 0.031 1.1E-06 50.1 13.1 24 82-105 2-25 (178)
254 1g5t_A COB(I)alamin adenosyltr 96.6 0.0031 1.1E-07 56.9 6.0 135 81-216 29-179 (196)
255 4gp7_A Metallophosphoesterase; 96.5 0.00044 1.5E-08 62.2 0.4 22 79-100 8-29 (171)
256 3cf2_A TER ATPase, transitiona 96.5 0.0016 5.6E-08 72.4 4.5 151 57-230 477-661 (806)
257 3hr8_A Protein RECA; alpha and 96.5 0.0059 2E-07 61.3 8.1 50 66-115 46-96 (356)
258 1pgv_A TMD-1, tropomodulin TMD 96.4 0.0012 4.2E-08 59.8 2.4 37 643-679 124-168 (197)
259 2cbz_A Multidrug resistance-as 96.3 0.013 4.3E-07 55.5 8.8 25 79-103 30-54 (237)
260 3hws_A ATP-dependent CLP prote 96.2 0.003 1E-07 64.6 4.4 47 59-105 17-76 (363)
261 3c8u_A Fructokinase; YP_612366 96.2 0.0042 1.4E-07 57.7 4.8 41 65-105 7-47 (208)
262 1v5w_A DMC1, meiotic recombina 96.1 0.027 9.3E-07 56.7 10.7 38 78-115 120-163 (343)
263 1n0w_A DNA repair protein RAD5 96.0 0.013 4.5E-07 55.8 7.9 37 79-115 23-65 (243)
264 1vma_A Cell division protein F 96.0 0.047 1.6E-06 53.6 11.7 50 65-114 83-138 (306)
265 3umf_A Adenylate kinase; rossm 96.0 0.027 9.4E-07 52.1 9.4 27 78-104 27-53 (217)
266 2b8t_A Thymidine kinase; deoxy 96.0 0.014 4.7E-07 54.4 7.3 111 79-200 11-126 (223)
267 1rz3_A Hypothetical protein rb 96.0 0.0091 3.1E-07 55.1 6.1 44 62-105 3-47 (201)
268 3rfe_A Platelet glycoprotein I 95.9 0.0097 3.3E-07 50.2 5.6 36 645-680 31-67 (130)
269 3io5_A Recombination and repai 95.9 0.019 6.5E-07 55.9 8.2 34 82-115 30-65 (333)
270 2px0_A Flagellar biosynthesis 95.9 0.034 1.2E-06 54.5 10.2 37 79-115 104-141 (296)
271 2pze_A Cystic fibrosis transme 95.9 0.061 2.1E-06 50.5 11.6 61 152-214 139-202 (229)
272 1pzn_A RAD51, DNA repair and r 95.9 0.016 5.5E-07 58.4 7.9 27 78-104 129-155 (349)
273 1ypw_A Transitional endoplasmi 95.9 0.0011 3.9E-08 75.0 -0.7 52 56-107 476-538 (806)
274 3bh0_A DNAB-like replicative h 95.8 0.051 1.7E-06 53.9 11.4 72 61-139 50-121 (315)
275 2orw_A Thymidine kinase; TMTK, 95.8 0.0044 1.5E-07 56.2 3.2 26 81-106 4-29 (184)
276 1odf_A YGR205W, hypothetical 3 95.8 0.069 2.4E-06 52.1 11.9 30 77-106 28-57 (290)
277 3jvv_A Twitching mobility prot 95.8 0.011 3.9E-07 59.5 6.4 112 80-204 123-235 (356)
278 1qhx_A CPT, protein (chloramph 95.8 0.0041 1.4E-07 56.1 2.7 25 81-105 4-28 (178)
279 3sr0_A Adenylate kinase; phosp 95.7 0.033 1.1E-06 51.2 8.7 23 82-104 2-24 (206)
280 3tui_C Methionine import ATP-b 95.7 0.05 1.7E-06 54.6 10.5 24 79-102 53-76 (366)
281 3a4m_A L-seryl-tRNA(SEC) kinas 95.7 0.026 8.8E-07 54.4 8.3 26 80-105 4-29 (260)
282 3e70_C DPA, signal recognition 95.7 0.074 2.5E-06 52.8 11.7 30 78-107 127-156 (328)
283 3kb2_A SPBC2 prophage-derived 95.6 0.0055 1.9E-07 54.9 3.1 25 81-105 2-26 (173)
284 3vaa_A Shikimate kinase, SK; s 95.6 0.0057 1.9E-07 56.4 3.3 27 79-105 24-50 (199)
285 3uie_A Adenylyl-sulfate kinase 95.6 0.012 4.3E-07 54.1 5.2 28 78-105 23-50 (200)
286 1u94_A RECA protein, recombina 95.5 0.019 6.3E-07 57.9 6.8 50 66-115 48-98 (356)
287 2zr9_A Protein RECA, recombina 95.5 0.02 6.7E-07 57.7 6.8 50 66-115 46-96 (349)
288 2z43_A DNA repair and recombin 95.5 0.024 8E-07 56.7 7.4 37 79-115 106-148 (324)
289 1ex7_A Guanylate kinase; subst 95.5 0.0045 1.5E-07 55.9 1.8 29 81-109 2-30 (186)
290 2pjz_A Hypothetical protein ST 95.4 0.07 2.4E-06 51.2 10.1 24 80-103 30-53 (263)
291 3kl4_A SRP54, signal recogniti 95.4 0.067 2.3E-06 55.1 10.5 36 79-114 96-131 (433)
292 3trf_A Shikimate kinase, SK; a 95.4 0.0074 2.5E-07 54.8 3.0 25 80-104 5-29 (185)
293 3nbx_X ATPase RAVA; AAA+ ATPas 95.4 0.0074 2.5E-07 63.8 3.3 44 57-104 22-65 (500)
294 1nks_A Adenylate kinase; therm 95.4 0.013 4.6E-07 53.4 4.8 26 81-106 2-27 (194)
295 1zu4_A FTSY; GTPase, signal re 95.3 0.093 3.2E-06 52.0 11.0 36 79-114 104-139 (320)
296 2ga8_A Hypothetical 39.9 kDa p 95.3 0.012 4.2E-07 58.4 4.6 48 61-108 3-52 (359)
297 3dm5_A SRP54, signal recogniti 95.3 0.078 2.7E-06 54.7 10.6 36 79-114 99-134 (443)
298 1xjc_A MOBB protein homolog; s 95.3 0.014 4.9E-07 51.5 4.4 29 79-107 3-31 (169)
299 1zp6_A Hypothetical protein AT 95.3 0.0084 2.9E-07 54.8 3.0 25 79-103 8-32 (191)
300 1xp8_A RECA protein, recombina 95.3 0.029 9.9E-07 56.7 7.1 51 65-115 58-109 (366)
301 3ice_A Transcription terminati 95.3 0.026 8.8E-07 56.4 6.5 28 79-106 173-200 (422)
302 1kgd_A CASK, peripheral plasma 95.2 0.0094 3.2E-07 53.8 3.1 26 80-105 5-30 (180)
303 2yvu_A Probable adenylyl-sulfa 95.2 0.02 6.7E-07 52.0 5.2 28 79-106 12-39 (186)
304 1g41_A Heat shock protein HSLU 95.2 0.014 4.9E-07 60.2 4.6 52 57-108 15-78 (444)
305 1ly1_A Polynucleotide kinase; 95.1 0.011 3.7E-07 53.4 3.3 22 81-102 3-24 (181)
306 1sky_E F1-ATPase, F1-ATP synth 95.1 0.033 1.1E-06 57.6 7.1 29 81-109 152-180 (473)
307 1zuh_A Shikimate kinase; alpha 95.1 0.011 3.8E-07 52.6 3.2 26 80-105 7-32 (168)
308 1pgv_A TMD-1, tropomodulin TMD 95.1 0.029 9.8E-07 50.8 5.7 107 584-699 36-167 (197)
309 1j8m_F SRP54, signal recogniti 95.0 0.13 4.4E-06 50.3 10.9 36 80-115 98-133 (297)
310 2bbs_A Cystic fibrosis transme 95.0 0.11 3.7E-06 50.6 10.3 25 79-103 63-87 (290)
311 3a00_A Guanylate kinase, GMP k 95.0 0.0097 3.3E-07 54.1 2.6 28 81-108 2-29 (186)
312 2rhm_A Putative kinase; P-loop 95.0 0.014 4.8E-07 53.3 3.7 25 80-104 5-29 (193)
313 1tue_A Replication protein E1; 95.0 0.019 6.3E-07 52.0 4.2 41 65-106 44-84 (212)
314 3fwy_A Light-independent proto 95.0 0.021 7.2E-07 56.5 5.1 38 78-115 46-83 (314)
315 3lw7_A Adenylate kinase relate 95.0 0.01 3.5E-07 53.2 2.7 20 81-100 2-21 (179)
316 2i1q_A DNA repair and recombin 95.0 0.055 1.9E-06 54.0 8.3 26 79-104 97-122 (322)
317 4eun_A Thermoresistant glucoki 94.9 0.013 4.5E-07 53.9 3.3 26 79-104 28-53 (200)
318 3ney_A 55 kDa erythrocyte memb 94.9 0.013 4.3E-07 53.3 3.0 27 79-105 18-44 (197)
319 1kag_A SKI, shikimate kinase I 94.9 0.0097 3.3E-07 53.3 2.3 25 81-105 5-29 (173)
320 1g8p_A Magnesium-chelatase 38 94.9 0.0097 3.3E-07 60.4 2.5 49 55-105 22-70 (350)
321 2ewv_A Twitching motility prot 94.9 0.046 1.6E-06 55.6 7.4 110 79-202 135-246 (372)
322 3iij_A Coilin-interacting nucl 94.9 0.011 3.7E-07 53.4 2.5 25 80-104 11-35 (180)
323 3tau_A Guanylate kinase, GMP k 94.9 0.013 4.5E-07 54.3 3.1 27 79-105 7-33 (208)
324 3tlx_A Adenylate kinase 2; str 94.8 0.02 6.9E-07 54.5 4.4 27 78-104 27-53 (243)
325 1nn5_A Similar to deoxythymidy 94.8 0.022 7.6E-07 53.0 4.6 29 80-108 9-37 (215)
326 1knq_A Gluconate kinase; ALFA/ 94.8 0.016 5.5E-07 51.9 3.4 26 79-104 7-32 (175)
327 2ze6_A Isopentenyl transferase 94.8 0.016 5.3E-07 55.6 3.5 25 81-105 2-26 (253)
328 3tr0_A Guanylate kinase, GMP k 94.8 0.014 4.8E-07 53.9 3.1 25 80-104 7-31 (205)
329 2plr_A DTMP kinase, probable t 94.8 0.026 8.8E-07 52.4 4.8 28 80-107 4-31 (213)
330 2q6t_A DNAB replication FORK h 94.7 0.13 4.4E-06 53.8 10.6 56 79-140 199-255 (444)
331 2jaq_A Deoxyguanosine kinase; 94.7 0.015 5.2E-07 53.6 3.1 24 82-105 2-25 (205)
332 1kht_A Adenylate kinase; phosp 94.7 0.017 5.9E-07 52.6 3.4 26 81-106 4-29 (192)
333 3t61_A Gluconokinase; PSI-biol 94.7 0.014 4.7E-07 53.9 2.8 25 80-104 18-42 (202)
334 2qor_A Guanylate kinase; phosp 94.7 0.013 4.5E-07 54.1 2.5 27 79-105 11-37 (204)
335 1ls1_A Signal recognition part 94.7 0.12 4.1E-06 50.6 9.6 36 79-114 97-132 (295)
336 1via_A Shikimate kinase; struc 94.6 0.016 5.6E-07 51.9 3.0 24 82-105 6-29 (175)
337 2j37_W Signal recognition part 94.6 0.25 8.5E-06 52.0 12.4 37 79-115 100-136 (504)
338 3cm0_A Adenylate kinase; ATP-b 94.6 0.021 7.3E-07 51.7 3.8 25 80-104 4-28 (186)
339 2c95_A Adenylate kinase 1; tra 94.6 0.016 5.5E-07 53.0 3.0 25 80-104 9-33 (196)
340 2xxa_A Signal recognition part 94.6 0.21 7E-06 51.8 11.6 36 79-114 99-135 (433)
341 2bdt_A BH3686; alpha-beta prot 94.6 0.018 6.3E-07 52.3 3.3 22 81-102 3-24 (189)
342 3asz_A Uridine kinase; cytidin 94.6 0.018 6.3E-07 53.4 3.3 27 79-105 5-31 (211)
343 1tev_A UMP-CMP kinase; ploop, 94.6 0.02 7E-07 52.3 3.6 25 80-104 3-27 (196)
344 1y63_A LMAJ004144AAA protein; 94.6 0.019 6.3E-07 52.1 3.2 25 79-103 9-33 (184)
345 2vli_A Antibiotic resistance p 94.6 0.012 4.2E-07 53.1 2.1 26 80-105 5-30 (183)
346 3p32_A Probable GTPase RV1496/ 94.5 0.051 1.8E-06 55.0 6.8 42 66-107 65-106 (355)
347 1ukz_A Uridylate kinase; trans 94.5 0.023 7.8E-07 52.4 3.8 27 78-104 13-39 (203)
348 2j41_A Guanylate kinase; GMP, 94.5 0.018 6.1E-07 53.3 3.1 25 80-104 6-30 (207)
349 3bgw_A DNAB-like replicative h 94.5 0.17 5.8E-06 52.7 10.8 55 79-139 196-250 (444)
350 1rj9_A FTSY, signal recognitio 94.5 0.031 1E-06 55.0 4.8 35 79-114 101-135 (304)
351 3b5x_A Lipid A export ATP-bind 94.5 0.18 6.1E-06 54.8 11.3 24 79-102 368-391 (582)
352 1lvg_A Guanylate kinase, GMP k 94.5 0.015 5E-07 53.5 2.3 26 80-105 4-29 (198)
353 4a74_A DNA repair and recombin 94.5 0.036 1.2E-06 52.2 5.1 38 78-115 23-66 (231)
354 2qt1_A Nicotinamide riboside k 94.4 0.023 7.8E-07 52.6 3.6 26 78-103 19-44 (207)
355 3tqc_A Pantothenate kinase; bi 94.4 0.028 9.7E-07 55.5 4.4 47 59-105 69-117 (321)
356 2z0h_A DTMP kinase, thymidylat 94.4 0.055 1.9E-06 49.4 6.1 25 82-106 2-26 (197)
357 3lda_A DNA repair protein RAD5 94.4 0.07 2.4E-06 54.6 7.4 37 79-115 177-219 (400)
358 2iyv_A Shikimate kinase, SK; t 94.4 0.016 5.5E-07 52.5 2.4 24 82-105 4-27 (184)
359 2pbr_A DTMP kinase, thymidylat 94.4 0.061 2.1E-06 49.0 6.3 25 82-106 2-26 (195)
360 1htw_A HI0065; nucleotide-bind 94.3 0.026 9E-07 49.4 3.5 27 78-104 31-57 (158)
361 1e6c_A Shikimate kinase; phosp 94.3 0.018 6.2E-07 51.5 2.5 25 81-105 3-27 (173)
362 1uf9_A TT1252 protein; P-loop, 94.3 0.024 8.1E-07 52.2 3.4 26 78-103 6-31 (203)
363 2bbw_A Adenylate kinase 4, AK4 94.3 0.022 7.6E-07 54.4 3.3 25 80-104 27-51 (246)
364 2f1r_A Molybdopterin-guanine d 94.3 0.025 8.7E-07 50.2 3.4 26 81-106 3-28 (171)
365 3b9q_A Chloroplast SRP recepto 94.3 0.039 1.3E-06 54.2 5.1 28 79-106 99-126 (302)
366 1aky_A Adenylate kinase; ATP:A 94.3 0.021 7.3E-07 53.4 3.0 25 80-104 4-28 (220)
367 2cdn_A Adenylate kinase; phosp 94.3 0.026 8.9E-07 51.9 3.6 25 80-104 20-44 (201)
368 2dr3_A UPF0273 protein PH0284; 94.3 0.035 1.2E-06 52.9 4.6 37 79-115 22-58 (247)
369 1cke_A CK, MSSA, protein (cyti 94.2 0.024 8.3E-07 53.3 3.4 24 81-104 6-29 (227)
370 2bwj_A Adenylate kinase 5; pho 94.2 0.023 7.8E-07 52.2 3.1 26 80-105 12-37 (199)
371 1znw_A Guanylate kinase, GMP k 94.2 0.021 7.1E-07 52.9 2.8 26 79-104 19-44 (207)
372 2pt5_A Shikimate kinase, SK; a 94.2 0.026 9E-07 50.1 3.4 24 82-105 2-25 (168)
373 2wwf_A Thymidilate kinase, put 94.2 0.037 1.3E-06 51.3 4.5 28 80-107 10-37 (212)
374 2if2_A Dephospho-COA kinase; a 94.2 0.023 7.8E-07 52.4 3.0 22 81-102 2-23 (204)
375 3e1s_A Exodeoxyribonuclease V, 94.2 0.13 4.4E-06 55.6 9.2 28 80-107 204-231 (574)
376 1qf9_A UMP/CMP kinase, protein 94.2 0.028 9.4E-07 51.3 3.5 25 80-104 6-30 (194)
377 1q57_A DNA primase/helicase; d 94.2 0.2 6.7E-06 53.5 10.7 57 79-141 241-298 (503)
378 1gtv_A TMK, thymidylate kinase 94.2 0.022 7.4E-07 53.0 2.8 25 82-106 2-26 (214)
379 3upu_A ATP-dependent DNA helic 94.1 0.14 4.9E-06 53.8 9.4 27 82-108 47-73 (459)
380 1z6g_A Guanylate kinase; struc 94.1 0.02 6.7E-07 53.5 2.4 26 79-104 22-47 (218)
381 1gvn_B Zeta; postsegregational 94.1 0.038 1.3E-06 54.0 4.5 26 79-104 32-57 (287)
382 3aez_A Pantothenate kinase; tr 94.1 0.028 9.6E-07 55.5 3.5 28 78-105 88-115 (312)
383 1yqt_A RNAse L inhibitor; ATP- 94.0 0.14 4.7E-06 54.9 9.1 134 80-214 312-475 (538)
384 2pez_A Bifunctional 3'-phospho 94.0 0.055 1.9E-06 48.6 5.1 28 79-106 4-31 (179)
385 1s96_A Guanylate kinase, GMP k 94.0 0.026 8.9E-07 52.6 2.9 27 79-105 15-41 (219)
386 1zak_A Adenylate kinase; ATP:A 93.9 0.022 7.7E-07 53.3 2.5 26 80-105 5-30 (222)
387 1uj2_A Uridine-cytidine kinase 93.9 0.03 1E-06 53.6 3.4 28 78-105 20-47 (252)
388 2eyu_A Twitching motility prot 93.9 0.051 1.8E-06 52.1 5.0 112 78-203 23-136 (261)
389 2jeo_A Uridine-cytidine kinase 93.9 0.032 1.1E-06 53.2 3.5 27 78-104 23-49 (245)
390 1np6_A Molybdopterin-guanine d 93.9 0.052 1.8E-06 48.3 4.5 27 80-106 6-32 (174)
391 1zd8_A GTP:AMP phosphotransfer 93.9 0.028 9.4E-07 52.9 2.9 25 80-104 7-31 (227)
392 4e22_A Cytidylate kinase; P-lo 93.9 0.028 9.6E-07 53.8 3.0 26 79-104 26-51 (252)
393 2ehv_A Hypothetical protein PH 93.8 0.037 1.3E-06 52.9 3.9 37 79-115 29-66 (251)
394 1m7g_A Adenylylsulfate kinase; 93.8 0.04 1.4E-06 51.1 3.9 27 79-105 24-50 (211)
395 2og2_A Putative signal recogni 93.8 0.053 1.8E-06 54.5 5.0 28 79-106 156-183 (359)
396 1jjv_A Dephospho-COA kinase; P 93.8 0.031 1.1E-06 51.6 3.1 22 81-102 3-24 (206)
397 3nwj_A ATSK2; P loop, shikimat 93.8 0.025 8.6E-07 53.8 2.5 26 80-105 48-73 (250)
398 3zvl_A Bifunctional polynucleo 93.8 0.14 4.9E-06 52.9 8.4 26 79-104 257-282 (416)
399 2hf9_A Probable hydrogenase ni 93.8 0.065 2.2E-06 50.2 5.4 28 79-106 37-64 (226)
400 3fb4_A Adenylate kinase; psych 93.7 0.036 1.2E-06 51.6 3.4 23 82-104 2-24 (216)
401 2p5t_B PEZT; postsegregational 93.7 0.034 1.2E-06 53.3 3.2 27 79-105 31-57 (253)
402 2wsm_A Hydrogenase expression/ 93.7 0.051 1.7E-06 50.7 4.4 29 79-107 29-57 (221)
403 2ffh_A Protein (FFH); SRP54, s 93.7 0.23 7.9E-06 51.0 9.6 36 79-114 97-132 (425)
404 3bk7_A ABC transporter ATP-bin 93.7 0.23 8E-06 53.9 10.1 132 80-214 382-545 (607)
405 1ny5_A Transcriptional regulat 93.6 0.31 1.1E-05 49.8 10.6 47 57-103 137-183 (387)
406 2grj_A Dephospho-COA kinase; T 93.6 0.037 1.3E-06 50.3 3.3 24 80-103 12-35 (192)
407 3cmu_A Protein RECA, recombina 93.6 0.068 2.3E-06 65.2 6.3 83 79-171 1426-1515(2050)
408 4a1f_A DNAB helicase, replicat 93.6 0.17 5.7E-06 50.3 8.2 74 59-139 26-99 (338)
409 3dzd_A Transcriptional regulat 93.6 0.12 4.2E-06 52.4 7.3 48 57-104 129-176 (368)
410 4eaq_A DTMP kinase, thymidylat 93.6 0.085 2.9E-06 49.5 5.7 28 79-106 25-52 (229)
411 2i3b_A HCR-ntpase, human cance 93.6 0.035 1.2E-06 50.3 2.9 24 82-105 3-26 (189)
412 3end_A Light-independent proto 93.5 0.065 2.2E-06 53.1 5.1 38 78-115 39-76 (307)
413 2zts_A Putative uncharacterize 93.5 0.059 2E-06 51.4 4.7 37 79-115 29-66 (251)
414 4edh_A DTMP kinase, thymidylat 93.4 0.13 4.3E-06 47.6 6.6 28 80-107 6-33 (213)
415 3dl0_A Adenylate kinase; phosp 93.4 0.041 1.4E-06 51.3 3.3 23 82-104 2-24 (216)
416 3be4_A Adenylate kinase; malar 93.4 0.036 1.2E-06 51.7 2.9 25 80-104 5-29 (217)
417 2v54_A DTMP kinase, thymidylat 93.4 0.039 1.3E-06 50.8 3.0 25 80-104 4-28 (204)
418 1cr0_A DNA primase/helicase; R 93.4 0.12 4.1E-06 50.8 6.7 37 79-115 34-71 (296)
419 1g8f_A Sulfate adenylyltransfe 93.4 0.067 2.3E-06 56.4 5.1 51 56-106 371-421 (511)
420 2r8r_A Sensor protein; KDPD, P 93.4 0.076 2.6E-06 49.0 4.8 33 82-114 8-40 (228)
421 3r20_A Cytidylate kinase; stru 93.3 0.045 1.5E-06 51.2 3.3 25 80-104 9-33 (233)
422 3d3q_A TRNA delta(2)-isopenten 93.3 0.045 1.5E-06 54.2 3.4 25 81-105 8-32 (340)
423 2yhs_A FTSY, cell division pro 93.3 0.069 2.4E-06 55.6 4.9 36 79-115 292-327 (503)
424 2pt7_A CAG-ALFA; ATPase, prote 93.2 0.1 3.5E-06 52.0 6.0 105 80-200 171-275 (330)
425 2r6a_A DNAB helicase, replicat 93.2 0.28 9.7E-06 51.4 9.7 55 79-139 202-257 (454)
426 3a8t_A Adenylate isopentenyltr 93.2 0.03 1E-06 55.2 2.0 25 80-104 40-64 (339)
427 3lnc_A Guanylate kinase, GMP k 93.2 0.029 1E-06 52.9 1.9 25 80-104 27-52 (231)
428 1ak2_A Adenylate kinase isoenz 93.2 0.048 1.6E-06 51.5 3.3 26 80-105 16-41 (233)
429 3hjn_A DTMP kinase, thymidylat 93.2 0.13 4.4E-06 46.9 6.1 34 82-115 2-35 (197)
430 1vht_A Dephospho-COA kinase; s 93.2 0.051 1.8E-06 50.7 3.5 23 80-102 4-26 (218)
431 3ozx_A RNAse L inhibitor; ATP 93.2 0.13 4.5E-06 55.0 7.0 23 80-102 294-316 (538)
432 2onk_A Molybdate/tungstate ABC 93.2 0.042 1.4E-06 52.0 2.9 24 78-102 23-46 (240)
433 3cr8_A Sulfate adenylyltranfer 93.1 0.099 3.4E-06 55.9 5.9 48 59-106 348-395 (552)
434 3tif_A Uncharacterized ABC tra 93.1 0.036 1.2E-06 52.3 2.2 24 79-102 30-53 (235)
435 3k1j_A LON protease, ATP-depen 93.1 0.047 1.6E-06 59.8 3.5 45 58-106 42-86 (604)
436 2f6r_A COA synthase, bifunctio 93.1 0.05 1.7E-06 53.0 3.4 24 79-102 74-97 (281)
437 1svm_A Large T antigen; AAA+ f 93.0 0.063 2.2E-06 54.4 4.1 27 78-104 167-193 (377)
438 1cp2_A CP2, nitrogenase iron p 93.0 0.084 2.9E-06 51.1 5.0 35 81-115 2-36 (269)
439 2ck3_D ATP synthase subunit be 93.0 0.28 9.5E-06 50.6 8.9 55 79-136 152-207 (482)
440 3crm_A TRNA delta(2)-isopenten 93.0 0.053 1.8E-06 53.3 3.5 24 81-104 6-29 (323)
441 1e4v_A Adenylate kinase; trans 93.0 0.053 1.8E-06 50.4 3.3 23 82-104 2-24 (214)
442 3exa_A TRNA delta(2)-isopenten 93.0 0.055 1.9E-06 52.7 3.4 25 80-104 3-27 (322)
443 2xb4_A Adenylate kinase; ATP-b 93.0 0.055 1.9E-06 50.7 3.4 23 82-104 2-24 (223)
444 1sq5_A Pantothenate kinase; P- 92.9 0.054 1.9E-06 53.6 3.5 28 78-105 78-105 (308)
445 2v3c_C SRP54, signal recogniti 92.9 0.055 1.9E-06 56.0 3.6 37 79-115 98-134 (432)
446 3v9p_A DTMP kinase, thymidylat 92.9 0.11 3.9E-06 48.3 5.4 28 80-107 25-52 (227)
447 1yrb_A ATP(GTP)binding protein 92.9 0.094 3.2E-06 50.4 5.0 27 79-105 13-39 (262)
448 3ake_A Cytidylate kinase; CMP 92.9 0.058 2E-06 49.8 3.4 24 82-105 4-27 (208)
449 3l0o_A Transcription terminati 92.9 0.28 9.5E-06 49.1 8.2 28 79-106 174-201 (427)
450 3lv8_A DTMP kinase, thymidylat 92.9 0.13 4.5E-06 48.2 5.8 35 80-114 27-62 (236)
451 2fz4_A DNA repair protein RAD2 92.8 0.46 1.6E-05 44.7 9.6 38 62-104 95-132 (237)
452 3foz_A TRNA delta(2)-isopenten 92.8 0.069 2.4E-06 51.9 3.8 26 79-104 9-34 (316)
453 3ld9_A DTMP kinase, thymidylat 92.8 0.15 5.2E-06 47.3 6.0 28 79-106 20-47 (223)
454 2afh_E Nitrogenase iron protei 92.8 0.098 3.3E-06 51.2 5.0 36 80-115 2-37 (289)
455 3qf4_A ABC transporter, ATP-bi 92.7 0.25 8.5E-06 53.7 8.6 24 79-102 368-391 (587)
456 2p67_A LAO/AO transport system 92.7 0.14 4.9E-06 51.3 6.2 30 77-106 53-82 (341)
457 2qm8_A GTPase/ATPase; G protei 92.7 0.15 5E-06 51.1 6.2 31 76-106 51-81 (337)
458 2pcj_A ABC transporter, lipopr 92.6 0.045 1.5E-06 51.2 2.3 24 79-102 29-52 (224)
459 1b0u_A Histidine permease; ABC 92.6 0.046 1.6E-06 52.6 2.2 24 79-102 31-54 (262)
460 1oix_A RAS-related protein RAB 92.5 0.061 2.1E-06 48.9 3.0 24 80-103 29-52 (191)
461 2v9p_A Replication protein E1; 92.5 0.059 2E-06 52.7 3.0 27 78-104 124-150 (305)
462 3b85_A Phosphate starvation-in 92.5 0.042 1.4E-06 50.7 1.9 24 80-103 22-45 (208)
463 1mv5_A LMRA, multidrug resista 92.5 0.054 1.8E-06 51.4 2.7 25 78-102 26-50 (243)
464 3rfe_A Platelet glycoprotein I 92.5 0.18 6.3E-06 42.3 5.7 51 387-438 12-66 (130)
465 2r2a_A Uncharacterized protein 92.5 0.11 3.6E-06 47.5 4.4 23 81-103 6-28 (199)
466 2olj_A Amino acid ABC transpor 92.5 0.048 1.6E-06 52.3 2.2 24 79-102 49-72 (263)
467 4tmk_A Protein (thymidylate ki 92.4 0.18 6.1E-06 46.6 6.0 27 81-107 4-30 (213)
468 2zu0_C Probable ATP-dependent 92.4 0.058 2E-06 52.0 2.7 24 79-102 45-68 (267)
469 1fx0_B ATP synthase beta chain 92.4 0.21 7.1E-06 51.8 7.0 54 79-135 164-218 (498)
470 3gfo_A Cobalt import ATP-bindi 92.3 0.055 1.9E-06 52.3 2.4 23 80-102 34-56 (275)
471 4akg_A Glutathione S-transfera 92.3 0.57 1.9E-05 59.5 11.8 137 81-230 1268-1431(2695)
472 1vpl_A ABC transporter, ATP-bi 92.3 0.053 1.8E-06 51.8 2.2 24 79-102 40-63 (256)
473 2wji_A Ferrous iron transport 92.2 0.085 2.9E-06 46.5 3.4 22 81-102 4-25 (165)
474 2d2e_A SUFC protein; ABC-ATPas 92.2 0.068 2.3E-06 51.0 2.9 24 79-102 28-51 (250)
475 1q3t_A Cytidylate kinase; nucl 92.2 0.081 2.8E-06 50.0 3.5 27 78-104 14-40 (236)
476 2qmh_A HPR kinase/phosphorylas 92.2 0.057 1.9E-06 48.6 2.1 25 80-104 34-58 (205)
477 2ghi_A Transport protein; mult 92.1 0.056 1.9E-06 51.9 2.2 24 79-102 45-68 (260)
478 4hlc_A DTMP kinase, thymidylat 92.1 0.13 4.4E-06 47.3 4.6 29 81-109 3-31 (205)
479 2dyk_A GTP-binding protein; GT 92.1 0.085 2.9E-06 46.1 3.3 22 81-102 2-23 (161)
480 2f9l_A RAB11B, member RAS onco 92.1 0.078 2.7E-06 48.5 3.1 23 81-103 6-28 (199)
481 1ji0_A ABC transporter; ATP bi 92.1 0.061 2.1E-06 50.9 2.4 24 79-102 31-54 (240)
482 1nlf_A Regulatory protein REPA 92.1 0.13 4.3E-06 50.1 4.8 27 80-106 30-56 (279)
483 2ixe_A Antigen peptide transpo 92.1 0.057 2E-06 52.1 2.2 24 79-102 44-67 (271)
484 1sgw_A Putative ABC transporte 92.1 0.051 1.8E-06 50.3 1.8 23 80-102 35-57 (214)
485 1ltq_A Polynucleotide kinase; 92.0 0.079 2.7E-06 52.3 3.3 23 81-103 3-25 (301)
486 1g6h_A High-affinity branched- 92.0 0.062 2.1E-06 51.5 2.4 24 79-102 32-55 (257)
487 4g1u_C Hemin import ATP-bindin 92.0 0.061 2.1E-06 51.7 2.4 24 79-102 36-59 (266)
488 3nh6_A ATP-binding cassette SU 92.0 0.067 2.3E-06 52.5 2.6 24 79-102 79-102 (306)
489 4a82_A Cystic fibrosis transme 91.9 0.17 5.7E-06 55.0 6.0 24 79-102 366-389 (578)
490 1tf7_A KAIC; homohexamer, hexa 91.9 0.27 9.3E-06 52.6 7.6 36 79-114 280-315 (525)
491 2ff7_A Alpha-hemolysin translo 91.9 0.065 2.2E-06 50.9 2.4 24 79-102 34-57 (247)
492 2yz2_A Putative ABC transporte 91.9 0.062 2.1E-06 51.8 2.2 24 79-102 32-55 (266)
493 3sop_A Neuronal-specific septi 91.9 0.081 2.8E-06 51.0 3.0 22 82-103 4-25 (270)
494 1tq4_A IIGP1, interferon-induc 91.8 0.07 2.4E-06 54.7 2.7 25 78-102 67-91 (413)
495 2zej_A Dardarin, leucine-rich 91.8 0.064 2.2E-06 48.4 2.2 21 82-102 4-24 (184)
496 3eph_A TRNA isopentenyltransfe 91.8 0.096 3.3E-06 53.0 3.6 25 81-105 3-27 (409)
497 1a7j_A Phosphoribulokinase; tr 91.7 0.053 1.8E-06 53.0 1.6 27 79-105 4-30 (290)
498 2iw3_A Elongation factor 3A; a 91.7 0.55 1.9E-05 53.4 9.9 123 80-206 461-611 (986)
499 2axn_A 6-phosphofructo-2-kinas 91.7 0.16 5.3E-06 54.2 5.3 30 79-108 34-63 (520)
500 2qi9_C Vitamin B12 import ATP- 91.6 0.072 2.5E-06 50.6 2.4 24 80-103 26-49 (249)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=9.6e-38 Score=341.71 Aligned_cols=293 Identities=16% Similarity=0.122 Sum_probs=223.5
Q ss_pred CCCCCcccchhhHHHHHhhhccc-CCCeEEEEEEccCchhHHHHHHHHHH----HHhhcccceEEeeechhcccc--cCh
Q 042374 54 TDLDGFVGLNSRIEEVKSLLCLE-SRDVRIVGIWGMGGIGKTTIASAVFH----QISRHFQGKCFMANVREESNK--MGA 126 (714)
Q Consensus 54 ~~~~~~vGr~~~~~~l~~~l~~~-~~~~~vv~i~G~~GiGKTtLa~~~~~----~~~~~f~~~~~~~~~~~~~~~--~~~ 126 (714)
+..+..|||+.++++|.++|..+ +.+.++|+|+||||+||||||+++|+ +++.+|+.++|+. ++.. ++.
T Consensus 125 p~~~~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~----vs~~~~~~~ 200 (549)
T 2a5y_B 125 PKQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK----DSGTAPKST 200 (549)
T ss_dssp BCCCCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE----CCCCSTTHH
T ss_pred CCCCccCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE----ECCCCCCCH
Confidence 34444359999999999999654 34589999999999999999999997 6889999999996 4443 478
Q ss_pred HHHHHHHHHHHhCCCC---C---cccchhhH-HHHHHHhcCC-cEEEEEeCCCCCHHHHHHHhcCCCCCCCCcEEEEEcC
Q 042374 127 IHVRDEVISQVLGDKN---L---KIGTLVIH-QNIRKRLRQV-KMLIVLDAVHDGFTQLESLAGELDKFTTGSRIIITTR 198 (714)
Q Consensus 127 ~~~~~~~~~~~~~~~~---~---~~~~~~~~-~~l~~~l~~k-~~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IliTtR 198 (714)
..++++++.++..... . +..+.+.. ..+++.++++ ||||||||||+. +++ .+.. .+||+||||||
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~-~~~-~~~~-----~~gs~ilvTTR 273 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE-ETI-RWAQ-----ELRLRCLVTTR 273 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH-HHH-HHHH-----HTTCEEEEEES
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc-hhh-cccc-----cCCCEEEEEcC
Confidence 8999999999654421 1 11122333 7888999996 999999999997 544 2211 27999999999
Q ss_pred ChhHHHhcC-CCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHhhhhhccCCHHHHHHHH
Q 042374 199 DKQVLDKCG-VNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVLGSSLYQKSKQQWEDRL 277 (714)
Q Consensus 199 ~~~v~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~l 277 (714)
++.++..++ ...+|+|++|+.+|||+||.+++|+... ++...+++.+|+++|+|+|||++++|+.++.+.+ +|...+
T Consensus 274 ~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l 351 (549)
T 2a5y_B 274 DVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQL 351 (549)
T ss_dssp BGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHH
T ss_pred CHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHh
Confidence 999998876 3467999999999999999999876542 4677789999999999999999999999987753 333333
Q ss_pred HH-HhcCCCchHHHHHHHhhhcCchhhHhhhh-----------hccccccCcccccccccee--eeecccC-CCceeeeC
Q 042374 278 HN-LRLISEPNIYKVLKISYDELNSKEKEMFL-----------DIACFFKGEDLDLGTDNIE--GIFLNLS-KINDLHLS 342 (714)
Q Consensus 278 ~~-l~~~~~~~~~~~l~ls~~~L~~~~k~~~~-----------~~~~fp~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~ 342 (714)
.. ++.....++..++.+||++||.++|.||. |||+||+++.++...|..+ |++.... .....+++
T Consensus 352 ~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i~~~~~~~~~~~~~ 431 (549)
T 2a5y_B 352 NNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVA 431 (549)
T ss_dssp HHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC-------CCCTHHHH
T ss_pred HHHhhcccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeeeeeeeeeeccceeccCCCCCCHHHHH
Confidence 32 33334567888999999999999999999 9999999999986666667 6665433 22223344
Q ss_pred HHHHhcccCceEEEEeCC
Q 042374 343 PQAFAKMSNLRLLKFYMP 360 (714)
Q Consensus 343 ~~~~~~l~~L~~L~l~~~ 360 (714)
. +|.+|.+..++.....
T Consensus 432 ~-~l~~L~~rsLl~~~~~ 448 (549)
T 2a5y_B 432 D-RLKRLSKRGALLSGKR 448 (549)
T ss_dssp H-HHHHTTTBSSCSEEEC
T ss_pred H-HHHHHHHcCCeeEecC
Confidence 4 9999999888876543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.1e-30 Score=299.04 Aligned_cols=327 Identities=22% Similarity=0.217 Sum_probs=265.9
Q ss_pred CceEEEecCCCCC-CCCCC-C-CCCCcccccCCCCCCccccCCcc--cc-cccEEeccCCccccccC-CCCC--CCCCcE
Q 042374 384 ELRYLHWHEYPLK-TLPFD-F-EPENLTELSLPYSKVEQSWGGKR--LL-SSKFIDLSHSQYLIRMP-DLSE--APNLER 454 (714)
Q Consensus 384 ~l~~L~l~~~~~~-~~~~~-~-~~~~L~~L~l~~~~i~~~~~~~~--~~-~L~~L~l~~~~~~~~~~-~~~~--l~~L~~ 454 (714)
.++.|++.+|.+. .+|.. + .+.+|++|++++|.+....+... +. +|++|++++|.+....+ .+.. +++|++
T Consensus 319 ~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~ 398 (768)
T 3rgz_A 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398 (768)
T ss_dssp TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCE
T ss_pred CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccE
Confidence 6777777777765 55543 2 56777788888877764333222 44 78888888887766555 3444 778999
Q ss_pred EecCCCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCC-CCCCcEEEeCCCcCCCccccc---ccccceEecccccc
Q 042374 455 INLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLH-FVCPVTINCGGCVNLTEFPQI---SGSVTKLILWETAI 530 (714)
Q Consensus 455 L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~---~~~L~~L~l~~~~i 530 (714)
|++++|...+.+|..++++++|++|++++|.....+|..+. +++|+.|++++|.....+|.. ..+|++|++++|.+
T Consensus 399 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478 (768)
T ss_dssp EECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc
Confidence 99999887778888999999999999999877777787776 889999999988766566643 45788999999999
Q ss_pred e-EeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCcccc-ccCccc
Q 042374 531 K-EVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIR-ELPSTF 608 (714)
Q Consensus 531 ~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~~~~~~ 608 (714)
. .+|..++.+++|++|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+. .+|..+
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 8 67888999999999999999998899999999999999999999988889999999999999999999887 677654
Q ss_pred cCC--------------------------------------------------------CCCcccCCCccCCCCCCCcee
Q 042374 609 EKG--------------------------------------------------------EGTESQLPSSVADTNDLEGLS 632 (714)
Q Consensus 609 ~~~--------------------------------------------------------~~~~~~l~~~~~~~~~L~~L~ 632 (714)
... ....+.+|..+..+++|+.|+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld 638 (768)
T 3rgz_A 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638 (768)
T ss_dssp GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE
T ss_pred hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEE
Confidence 331 011134566788889999999
Q ss_pred ccCCCcCc-----CCCCCCCCEEECCCCCCc-ccchhhccCCCCCeeccccCccccccCCC---cCcccEeecccCcccc
Q 042374 633 LYLRNYAL-----NGCLSSLEYLDLSGNDFE-SLPASIKQLSRLRKLHLCYCDKLQSIPEL---PLSLKWLDASNCERLQ 703 (714)
Q Consensus 633 l~~~~~~~-----~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~l~~~~~~~~lp~~---~~~L~~L~l~~c~~l~ 703 (714)
+++|.+.. ++.+++|+.|+|++|+++ .+|..++++++|++|+|++|++.+.+|.. +++|+.|++++|+...
T Consensus 639 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred CcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence 99999875 778999999999999999 89999999999999999999999999964 5789999999999888
Q ss_pred cccCccc
Q 042374 704 TFPEISS 710 (714)
Q Consensus 704 ~lp~~~~ 710 (714)
.+|+..+
T Consensus 719 ~iP~~~~ 725 (768)
T 3rgz_A 719 PIPEMGQ 725 (768)
T ss_dssp ECCSSSS
T ss_pred cCCCchh
Confidence 8997643
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=2e-30 Score=297.03 Aligned_cols=330 Identities=19% Similarity=0.182 Sum_probs=200.6
Q ss_pred CceEEEecCCCCCCCCCCCCCCCcccccCCCCCCccc-cCCcc--cccccEEeccCCccccccC-CCCCCCCCcEEecCC
Q 042374 384 ELRYLHWHEYPLKTLPFDFEPENLTELSLPYSKVEQS-WGGKR--LLSSKFIDLSHSQYLIRMP-DLSEAPNLERINLLN 459 (714)
Q Consensus 384 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~--~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~ 459 (714)
++++|++.+|.+........+++|++|++++|.+... +.... +++|++|++++|.+....| .+..+++|++|++++
T Consensus 248 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 327 (768)
T 3rgz_A 248 ELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327 (768)
T ss_dssp SCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCS
T ss_pred CCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCC
Confidence 4555666655554322222555566666666655522 22221 3566666666666554444 356666666666666
Q ss_pred CCCCccCCcc-ccCCCCCCEEecCCCCCCCccCCCCC-CC-CCcEEEeCCCcCCCccccc-----ccccceEecccccce
Q 042374 460 CTNLVSVPSS-IQNFNHLSMLCFEGCKSLRSFPSNLH-FV-CPVTINCGGCVNLTEFPQI-----SGSVTKLILWETAIK 531 (714)
Q Consensus 460 ~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~~-~~-~L~~L~l~~~~~l~~~~~~-----~~~L~~L~l~~~~i~ 531 (714)
|...+.+|.. ++.+++|++|++++|.....+|..+. +. +|+.|+++++.....++.. ..+|++|++.+|.+.
T Consensus 328 n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 407 (768)
T 3rgz_A 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407 (768)
T ss_dssp SEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE
T ss_pred CcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc
Confidence 6544455543 56666666666666555445555544 33 6666666655433222211 335666777766666
Q ss_pred -EeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCcccc-ccCcccc
Q 042374 532 -EVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIR-ELPSTFE 609 (714)
Q Consensus 532 -~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~~~~~~~ 609 (714)
.+|..++.+++|++|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+..+++|++|++++|.+. .+|..+.
T Consensus 408 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 487 (768)
T 3rgz_A 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh
Confidence 45666667777777777777666666666677777777777777666666666667777777777776665 3343322
Q ss_pred C----------CCCCcccCCCccCCCCCCCceeccCCCcCc-----CCCCCCCCEEECCCCCCc-ccchhh---------
Q 042374 610 K----------GEGTESQLPSSVADTNDLEGLSLYLRNYAL-----NGCLSSLEYLDLSGNDFE-SLPASI--------- 664 (714)
Q Consensus 610 ~----------~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-----~~~l~~L~~L~L~~n~l~-~lp~~l--------- 664 (714)
. .+...+.+|.+++.+++|+.|++++|.+.. ++.+++|+.|++++|.++ .+|.++
T Consensus 488 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~ 567 (768)
T 3rgz_A 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCC
T ss_pred cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhh
Confidence 1 112223556667777888888888887653 566778888888887766 455432
Q ss_pred -------------------------------------------------------------ccCCCCCeeccccCccccc
Q 042374 665 -------------------------------------------------------------KQLSRLRKLHLCYCDKLQS 683 (714)
Q Consensus 665 -------------------------------------------------------------~~l~~L~~L~l~~~~~~~~ 683 (714)
..+++|++|++++|.+.+.
T Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ 647 (768)
T 3rgz_A 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647 (768)
T ss_dssp STTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSC
T ss_pred hccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccccc
Confidence 2346677888888887777
Q ss_pred cCCC---cCcccEeecccCcccccccCcccccc
Q 042374 684 IPEL---PLSLKWLDASNCERLQTFPEISSYLE 713 (714)
Q Consensus 684 lp~~---~~~L~~L~l~~c~~l~~lp~~~~~~~ 713 (714)
+|.. +++|+.|++++|..-..+|+.+..+.
T Consensus 648 ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~ 680 (768)
T 3rgz_A 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred CCHHHhccccCCEEeCcCCccCCCCChHHhCCC
Confidence 7753 46788888888876668887776553
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.97 E-value=1.6e-30 Score=286.67 Aligned_cols=234 Identities=19% Similarity=0.211 Sum_probs=178.4
Q ss_pred CcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHH--HHhhcccc-eEEeeechhcccccChHHHHHHHH
Q 042374 58 GFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFH--QISRHFQG-KCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 58 ~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~--~~~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
..|||+.++++|.++|... ++.++|+|+||||+||||||+++|+ +++.+|+. ++|+. ++...+...+...+.
T Consensus 129 ~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs----Vs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----LKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE----CCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE----eCCCCCHHHHHHHHH
Confidence 3599999999999998643 3478999999999999999999997 57889997 78887 455556666666655
Q ss_pred HHHh--CCC-CCc-------ccchhhH-HHHHHHh---cCCcEEEEEeCCCCCHHHHHHHhcCCCCCCCCcEEEEEcCCh
Q 042374 135 SQVL--GDK-NLK-------IGTLVIH-QNIRKRL---RQVKMLIVLDAVHDGFTQLESLAGELDKFTTGSRIIITTRDK 200 (714)
Q Consensus 135 ~~~~--~~~-~~~-------~~~~~~~-~~l~~~l---~~k~~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IliTtR~~ 200 (714)
..+. +.. ... ....+.. +.+++.+ .++|+||||||+|+. +.|+.+. +||+||||||++
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~-eqLe~f~-------pGSRILVTTRd~ 275 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA-KAWNAFN-------LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH-HHHHHHH-------SSCCEEEECSCS
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH-HHHHhhC-------CCeEEEEeccCh
Confidence 5321 110 000 0112222 5566655 689999999999997 7787652 789999999999
Q ss_pred hHHHhcCCCeEEecC------CCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHhhhhhccC--CHHH
Q 042374 201 QVLDKCGVNYVYEVE------GLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVLGSSLYQK--SKQQ 272 (714)
Q Consensus 201 ~v~~~~~~~~~~~l~------~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~--~~~~ 272 (714)
.++..+.....++++ +|+.+||++||.+. ++.. .. ++..+ .|+|+|||++++|+.++++ +..+
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~-~g~~--~e---eL~~e---ICgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCR--PQ---DLPRE---VLTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHH-HCCC--TT---THHHH---HCCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHH-cCCC--HH---HHHHH---HhCCCHHHHHHHHHHHhCCCCCHHH
Confidence 988644333345566 89999999999988 3332 11 23333 3999999999999999987 6888
Q ss_pred HHHHHHHHhcCCCchHHHHHHHhhhcCchhh-HhhhhhccccccCcccc
Q 042374 273 WEDRLHNLRLISEPNIYKVLKISYDELNSKE-KEMFLDIACFFKGEDLD 320 (714)
Q Consensus 273 w~~~l~~l~~~~~~~~~~~l~ls~~~L~~~~-k~~~~~~~~fp~~~~~~ 320 (714)
|+.. ....+..++.+||+.|+++. |.||+++++||+++.+.
T Consensus 347 W~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~ 388 (1221)
T 1vt4_I 347 WKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388 (1221)
T ss_dssp HHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEE
T ss_pred HhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCC
Confidence 8763 34679999999999999999 99999999999998886
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.9e-28 Score=274.44 Aligned_cols=264 Identities=17% Similarity=0.130 Sum_probs=186.9
Q ss_pred ccCCCceeeeCHHHHhcccCceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCCC-CCCC-CCCCccc
Q 042374 332 NLSKINDLHLSPQAFAKMSNLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTL-PFDF-EPENLTE 409 (714)
Q Consensus 332 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~-~~~~-~~~~L~~ 409 (714)
++.......+.+..|..+.+|+.|++++|.+.+. .+..+..++ ++++|++++|.+..+ |..+ .+.+|++
T Consensus 39 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~--------~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (606)
T 3t6q_A 39 EFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI--------HEDTFQSQH-RLDTLVLTANPLIFMAETALSGPKALKH 109 (606)
T ss_dssp ECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEE--------CTTTTTTCT-TCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred EccCCccCcCChhHhccCccceEEECCCCcccee--------ChhhccCcc-ccCeeeCCCCcccccChhhhcccccccE
Confidence 3344444456678899999999999999875432 223344444 899999999998876 4444 7899999
Q ss_pred ccCCCCCCccccCCc--ccccccEEeccCCcccc-ccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCC--EEecCCC
Q 042374 410 LSLPYSKVEQSWGGK--RLLSSKFIDLSHSQYLI-RMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLS--MLCFEGC 484 (714)
Q Consensus 410 L~l~~~~i~~~~~~~--~~~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~--~L~l~~~ 484 (714)
|++++|.++.+.... .+++|++|++++|.+.. ..+.+..+++|++|++++|......|..++.+++|+ .|++++|
T Consensus 110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp EECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred eeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 999999999874333 38999999999999876 346666799999999999876666677788999998 8899988
Q ss_pred CCCCccCCCCCCCCCcEEEeCCCc---------------------------------------------------CCCcc
Q 042374 485 KSLRSFPSNLHFVCPVTINCGGCV---------------------------------------------------NLTEF 513 (714)
Q Consensus 485 ~~~~~~~~~~~~~~L~~L~l~~~~---------------------------------------------------~l~~~ 513 (714)
......|..+...+|+.|++++|. .+..+
T Consensus 190 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~ 269 (606)
T 3t6q_A 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269 (606)
T ss_dssp CCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred ccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc
Confidence 766665655555555555544432 11222
Q ss_pred c----ccccccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCch-hhhcc
Q 042374 514 P----QISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPE-ILEKM 588 (714)
Q Consensus 514 ~----~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l 588 (714)
+ ...++|++|++++|.++.+|..+..+++|++|++++|.+....|..+..+++|++|++++|.+...+|. .+..+
T Consensus 270 ~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 270 SSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp CTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred CHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 2 123567788888888888888888888888888888877666666777777777777777765544433 35666
Q ss_pred ccccccccCCcccccc
Q 042374 589 EYLNYNALGRTKIREL 604 (714)
Q Consensus 589 ~~L~~L~l~~~~l~~~ 604 (714)
++|++|++++|.+...
T Consensus 350 ~~L~~L~l~~n~l~~~ 365 (606)
T 3t6q_A 350 ENLRELDLSHDDIETS 365 (606)
T ss_dssp TTCCEEECCSSCCCEE
T ss_pred CcCCEEECCCCccccc
Confidence 6666666666655543
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.96 E-value=9e-30 Score=309.85 Aligned_cols=264 Identities=21% Similarity=0.321 Sum_probs=198.7
Q ss_pred HHHHHHHhccCCCCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHH---HhhcccceE-Eeeech
Q 042374 43 WRDALTEASNSTDLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQ---ISRHFQGKC-FMANVR 118 (714)
Q Consensus 43 ~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~---~~~~f~~~~-~~~~~~ 118 (714)
++..+........+..||||++++++|.++|...+++.++|+|+||||+||||||+++|++ ...+|...+ |+. +.
T Consensus 110 ~~~~l~~~~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~-~~ 188 (1249)
T 3sfz_A 110 VRTVLCEGGVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS-IG 188 (1249)
T ss_dssp HHHHHHHTTCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE-CC
T ss_pred hhheeccCCCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE-EC
Confidence 3333433333336677999999999999999766667899999999999999999999985 355575544 665 22
Q ss_pred hcccccChHHHHHHHHHHHhCCCCC---cccchhhH-HHHHHHhcCC--cEEEEEeCCCCCHHHHHHHhcCCCCCCCCcE
Q 042374 119 EESNKMGAIHVRDEVISQVLGDKNL---KIGTLVIH-QNIRKRLRQV--KMLIVLDAVHDGFTQLESLAGELDKFTTGSR 192 (714)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~l~~~l~~k--~~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~ 192 (714)
.. ........+++++..+...... .....+.. +.+++.+.++ ||||||||+|+. .+|.. ..+||+
T Consensus 189 ~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~-~~~~~-------~~~~~~ 259 (1249)
T 3sfz_A 189 KQ-DKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP-WVLKA-------FDNQCQ 259 (1249)
T ss_dssp SC-CHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH-HHHTT-------TCSSCE
T ss_pred Cc-CchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH-HHHHh-------hcCCCE
Confidence 11 1233444556666664433211 12233334 6777777766 999999999987 55443 267999
Q ss_pred EEEEcCChhHHHh-cCCCeEEecCC-CCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHhhhhhccCCH
Q 042374 193 IIITTRDKQVLDK-CGVNYVYEVEG-LEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVLGSSLYQKSK 270 (714)
Q Consensus 193 IliTtR~~~v~~~-~~~~~~~~l~~-L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~ 270 (714)
||||||++.++.. .+....+++++ |+++|+++||...++... +...+.+.+|+++|+|+|||++++|++++.+.
T Consensus 260 ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~---~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~- 335 (1249)
T 3sfz_A 260 ILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK---EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP- 335 (1249)
T ss_dssp EEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS---TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-
T ss_pred EEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh---hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-
Confidence 9999999998854 45567899996 999999999998874332 23336789999999999999999999998776
Q ss_pred HHHHHHHHHHhcCCC-----------chHHHHHHHhhhcCchhhHhhhhhccccccCcccc
Q 042374 271 QQWEDRLHNLRLISE-----------PNIYKVLKISYDELNSKEKEMFLDIACFFKGEDLD 320 (714)
Q Consensus 271 ~~w~~~l~~l~~~~~-----------~~~~~~l~ls~~~L~~~~k~~~~~~~~fp~~~~~~ 320 (714)
..|+..++.+..... +.+..++.+||+.|++++|.||.||++||+++.++
T Consensus 336 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~ 396 (1249)
T 3sfz_A 336 NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVP 396 (1249)
T ss_dssp SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEE
T ss_pred hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeC
Confidence 478888888765431 34889999999999999999999999999998877
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=4e-29 Score=279.46 Aligned_cols=319 Identities=18% Similarity=0.154 Sum_probs=209.1
Q ss_pred CcccCCCCceEEEecCCCCCC------------------CCCCCC---CCCcccccCCCCCCccccCCcc--cccccEEe
Q 042374 377 GLEYLPEELRYLHWHEYPLKT------------------LPFDFE---PENLTELSLPYSKVEQSWGGKR--LLSSKFID 433 (714)
Q Consensus 377 ~~~~l~~~l~~L~l~~~~~~~------------------~~~~~~---~~~L~~L~l~~~~i~~~~~~~~--~~~L~~L~ 433 (714)
.+..++ ++++|++++|.+.. +|..+. +++|++|++++|.+....+... +++|++|+
T Consensus 201 ~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 201 AVMRLT-KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp GGGGCT-TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred HHhccc-CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence 334443 78888888888887 777654 7888888888888765544332 88888888
Q ss_pred ccCCc-ccc-ccC-CCCCC------CCCcEEecCCCCCCccCCc--cccCCCCCCEEecCCCCCCCccCCCCC-CCCCcE
Q 042374 434 LSHSQ-YLI-RMP-DLSEA------PNLERINLLNCTNLVSVPS--SIQNFNHLSMLCFEGCKSLRSFPSNLH-FVCPVT 501 (714)
Q Consensus 434 l~~~~-~~~-~~~-~~~~l------~~L~~L~L~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~ 501 (714)
+++|. +.. .+| .+..+ ++|++|++++|... .+|. .++++++|++|++++|...+.+| .+. +.+|+.
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~ 357 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence 88887 665 455 34444 88888888888655 7887 88888888888888877665788 443 788888
Q ss_pred EEeCCCcCCCccccc---ccc-cceEecccccceEeccccCCCC--CCcEEecCCCCCCcccccccc-------CCCCCC
Q 042374 502 INCGGCVNLTEFPQI---SGS-VTKLILWETAIKEVPSSVGCLT--NLKVLSLSQCPRLKRISTSIL-------KLKSLQ 568 (714)
Q Consensus 502 L~l~~~~~l~~~~~~---~~~-L~~L~l~~~~i~~lp~~~~~l~--~L~~L~l~~~~~~~~~~~~~~-------~l~~L~ 568 (714)
|+++++. +..+|.. ..+ |++|++++|.+..+|..+..+. +|++|++++|.+.+..|..+. .+++|+
T Consensus 358 L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~ 436 (636)
T 4eco_A 358 LNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436 (636)
T ss_dssp EECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred EECCCCc-cccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence 8888764 3355432 335 8888888888888888777654 888899988888887777777 777888
Q ss_pred EEEecCCCCCCCCch-hhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc----CC-
Q 042374 569 NLYLIQCFDLENFPE-ILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL----NG- 642 (714)
Q Consensus 569 ~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~----~~- 642 (714)
+|++++|.+. .+|. .+..+++|++|++++|.++.+|..+.... ...+.++++|+.|++++|.+.. +.
T Consensus 437 ~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~------~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 509 (636)
T 4eco_A 437 SINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE------NENFKNTYLLTSIDLRFNKLTKLSDDFRA 509 (636)
T ss_dssp EEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEET------TEECTTGGGCCEEECCSSCCCBCCGGGST
T ss_pred EEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccc------cccccccCCccEEECcCCcCCccChhhhh
Confidence 9999888776 4554 45568889999999988888876542110 0011122245555555554443 11
Q ss_pred -CCCCCCEEECCCCCCcccchhhccCCCCCeeccc------cCccccccCCC---cCcccEeecccCcccccccC
Q 042374 643 -CLSSLEYLDLSGNDFESLPASIKQLSRLRKLHLC------YCDKLQSIPEL---PLSLKWLDASNCERLQTFPE 707 (714)
Q Consensus 643 -~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~------~~~~~~~lp~~---~~~L~~L~l~~c~~l~~lp~ 707 (714)
.+++|+.|+|++|+++.+|..+.++++|++|+++ +|.+.+.+|.. +++|+.|++++|. ++.+|.
T Consensus 510 ~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~ 583 (636)
T 4eco_A 510 TTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNE 583 (636)
T ss_dssp TTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCS
T ss_pred ccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCH
Confidence 4445555555555555455444455555555552 23334444431 2444555555443 244443
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=3.4e-28 Score=272.38 Aligned_cols=225 Identities=19% Similarity=0.137 Sum_probs=114.1
Q ss_pred CCCCCEEecCCCCCCCccCCCCCCCCCcEEEeCCCcCCCccc-ccccccceEecccccceEe---ccccCCCCCCcEEec
Q 042374 473 FNHLSMLCFEGCKSLRSFPSNLHFVCPVTINCGGCVNLTEFP-QISGSVTKLILWETAIKEV---PSSVGCLTNLKVLSL 548 (714)
Q Consensus 473 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~L~~L~l~~~~i~~l---p~~~~~l~~L~~L~l 548 (714)
+++|++|++++|.. +.+|.. .+.+|+.|+++++..+...+ ...++|++|++++|.+..+ |..+..+++|++|++
T Consensus 306 ~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L 383 (606)
T 3vq2_A 306 HFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383 (606)
T ss_dssp TCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEEC
T ss_pred cccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeEC
Confidence 33445555554443 444433 45555555555553332221 1234555666666655544 444555566666666
Q ss_pred CCCCCCccccccccCCCCCCEEEecCCCCCCCCc-hhhhccccccccccCCccccccCccc-cCC----------CCCcc
Q 042374 549 SQCPRLKRISTSILKLKSLQNLYLIQCFDLENFP-EILEKMEYLNYNALGRTKIRELPSTF-EKG----------EGTES 616 (714)
Q Consensus 549 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~-~~~----------~~~~~ 616 (714)
++|.+ ..+|..+..+++|+.|++++|.+.+..| ..+..+++|++|++++|.+...+... ... +...+
T Consensus 384 ~~n~l-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 462 (606)
T 3vq2_A 384 SFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462 (606)
T ss_dssp CSCSE-EEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCcc-ccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC
Confidence 65543 2344555555666666666555444433 34555556666666655554432211 000 00001
Q ss_pred -cCCCccCCCCCCCceeccCCCcCc-----CCCCCCCCEEECCCCCCccc-chhhccCCCCCeeccccCccccccCC---
Q 042374 617 -QLPSSVADTNDLEGLSLYLRNYAL-----NGCLSSLEYLDLSGNDFESL-PASIKQLSRLRKLHLCYCDKLQSIPE--- 686 (714)
Q Consensus 617 -~l~~~~~~~~~L~~L~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~l~~~~~~~~lp~--- 686 (714)
.+|..+..+++|+.|++++|.+.. ++.+++|++|+|++|+++.+ |..+.++++|++|++++|++. .+|.
T Consensus 463 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~ 541 (606)
T 3vq2_A 463 NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQ 541 (606)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGG
T ss_pred cchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHh
Confidence 123335566666666666665544 44556666666666666644 555666666666666666543 4443
Q ss_pred -CcCcccEeecccCcc
Q 042374 687 -LPLSLKWLDASNCER 701 (714)
Q Consensus 687 -~~~~L~~L~l~~c~~ 701 (714)
.+.+|+.|++++||.
T Consensus 542 ~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 542 HFPKSLAFFNLTNNSV 557 (606)
T ss_dssp GSCTTCCEEECCSCCC
T ss_pred hhcccCcEEEccCCCc
Confidence 123466666666543
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=6.2e-28 Score=270.27 Aligned_cols=256 Identities=17% Similarity=0.143 Sum_probs=142.4
Q ss_pred cEEeccCCccccccCC-CCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCC-CCCCcEEEeCCC
Q 042374 430 KFIDLSHSQYLIRMPD-LSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLH-FVCPVTINCGGC 507 (714)
Q Consensus 430 ~~L~l~~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~ 507 (714)
+.|++++|.+....+. |..+++|++|++++|. +..+|..+..+++|++|++++|......|..+. +++|++|+++++
T Consensus 257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335 (606)
T ss_dssp EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC
T ss_pred eEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCC
Confidence 3334444433333332 5556666666666654 335666666666666666666554444343333 666666666665
Q ss_pred cCCCccc----ccccccceEecccccceEe---ccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCC
Q 042374 508 VNLTEFP----QISGSVTKLILWETAIKEV---PSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLEN 580 (714)
Q Consensus 508 ~~l~~~~----~~~~~L~~L~l~~~~i~~l---p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 580 (714)
.....++ ...++|++|++++|.+..+ |..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+...
T Consensus 336 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 415 (606)
T 3t6q_A 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415 (606)
T ss_dssp SSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC
T ss_pred CcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc
Confidence 4333332 2234666666666666655 34466666677777766666555566666666666666666665443
Q ss_pred Cc-hhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc--------CCCCCCCCEEE
Q 042374 581 FP-EILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL--------NGCLSSLEYLD 651 (714)
Q Consensus 581 ~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~--------~~~l~~L~~L~ 651 (714)
.+ ..+..+++|++|++++|.+...+.. .+..+++|+.|++++|.+.. ++.+++|++|+
T Consensus 416 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~ 482 (606)
T 3t6q_A 416 DAQSPFQNLHLLKVLNLSHSLLDISSEQ-------------LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482 (606)
T ss_dssp TTCCTTTTCTTCCEEECTTCCCBTTCTT-------------TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEE
T ss_pred ccchhhhCcccCCEEECCCCccCCcCHH-------------HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEE
Confidence 33 2366666666666666666544332 25555666666666665432 34455666666
Q ss_pred CCCCCCccc-chhhccCCCCCeeccccCccccccCCC---cCcccEeecccCc
Q 042374 652 LSGNDFESL-PASIKQLSRLRKLHLCYCDKLQSIPEL---PLSLKWLDASNCE 700 (714)
Q Consensus 652 L~~n~l~~l-p~~l~~l~~L~~L~l~~~~~~~~lp~~---~~~L~~L~l~~c~ 700 (714)
+++|+++.+ |.++.++++|++|++++|++.+..|.. +++| .|++++|.
T Consensus 483 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred CCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence 666655544 345555566666666666555444432 2334 55555553
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=2.3e-28 Score=277.41 Aligned_cols=318 Identities=14% Similarity=0.106 Sum_probs=214.8
Q ss_pred CcccCCCCceEEEecCCCCCC------------------CCCCC---CCCCcccccCCCCCCccccCCcc--cccccEEe
Q 042374 377 GLEYLPEELRYLHWHEYPLKT------------------LPFDF---EPENLTELSLPYSKVEQSWGGKR--LLSSKFID 433 (714)
Q Consensus 377 ~~~~l~~~l~~L~l~~~~~~~------------------~~~~~---~~~~L~~L~l~~~~i~~~~~~~~--~~~L~~L~ 433 (714)
.+..++ +++.|++++|.+.. +|..+ .+.+|++|++++|.+....+... +++|++|+
T Consensus 443 ~l~~L~-~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 443 AIQRLT-KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGGCT-TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred HHhcCC-CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence 344443 78899999999988 88776 48899999999998765544332 89999999
Q ss_pred ccCCc-ccc-ccC--------CCCCCCCCcEEecCCCCCCccCCc--cccCCCCCCEEecCCCCCCCccCCCCCCCCCcE
Q 042374 434 LSHSQ-YLI-RMP--------DLSEAPNLERINLLNCTNLVSVPS--SIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVT 501 (714)
Q Consensus 434 l~~~~-~~~-~~~--------~~~~l~~L~~L~L~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 501 (714)
+++|. +.. .+| .+..+++|++|++++|... .+|. .++++++|++|++++|... .+|....+.+|+.
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~ 599 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTD 599 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESE
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceE
Confidence 99997 665 444 2345569999999998755 8888 8999999999999997655 8884334889999
Q ss_pred EEeCCCcCCCccccc---ccc-cceEecccccceEeccccCCCCC--CcEEecCCCCCCcccccc---cc--CCCCCCEE
Q 042374 502 INCGGCVNLTEFPQI---SGS-VTKLILWETAIKEVPSSVGCLTN--LKVLSLSQCPRLKRISTS---IL--KLKSLQNL 570 (714)
Q Consensus 502 L~l~~~~~l~~~~~~---~~~-L~~L~l~~~~i~~lp~~~~~l~~--L~~L~l~~~~~~~~~~~~---~~--~l~~L~~L 570 (714)
|+++++.. ..+|.. ..+ |+.|++++|.+..+|..+..+.. |+.|++++|.+.+.+|.. +. .+++|+.|
T Consensus 600 L~Ls~N~l-~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L 678 (876)
T 4ecn_A 600 LKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678 (876)
T ss_dssp EECCSSCC-SCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEE
T ss_pred EECcCCcc-ccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEE
Confidence 99988753 366632 345 89999999999999988877654 999999999887765532 22 34589999
Q ss_pred EecCCCCCCCCchhh-hccccccccccCCccccccCccccCCC-----------------CCcccCCCccC--CCCCCCc
Q 042374 571 YLIQCFDLENFPEIL-EKMEYLNYNALGRTKIRELPSTFEKGE-----------------GTESQLPSSVA--DTNDLEG 630 (714)
Q Consensus 571 ~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~l~~~~~~~~~~~-----------------~~~~~l~~~~~--~~~~L~~ 630 (714)
++++|.+. .+|..+ ..+++|+.|++++|.+..+|..+.... .....+|..+. .+++|+.
T Consensus 679 ~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~ 757 (876)
T 4ecn_A 679 TLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSN 757 (876)
T ss_dssp ECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCE
T ss_pred EccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCE
Confidence 99998876 566554 578999999999999988887653211 11123343343 4455555
Q ss_pred eeccCCCcCc----CCCCCCCCEEECCC------CCCc-ccchhhccCCCCCeeccccCccccccCC-CcCcccEeeccc
Q 042374 631 LSLYLRNYAL----NGCLSSLEYLDLSG------NDFE-SLPASIKQLSRLRKLHLCYCDKLQSIPE-LPLSLKWLDASN 698 (714)
Q Consensus 631 L~l~~~~~~~----~~~l~~L~~L~L~~------n~l~-~lp~~l~~l~~L~~L~l~~~~~~~~lp~-~~~~L~~L~l~~ 698 (714)
|+|++|.+.. ++.+++|+.|+|++ |++. .+|.++.++++|+.|+|++|++ +.+|. .+++|+.|++++
T Consensus 758 L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~ 836 (876)
T 4ecn_A 758 MDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIAD 836 (876)
T ss_dssp EECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCS
T ss_pred EEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCC
Confidence 5555554433 23344555555543 3222 3444455555555555555544 44443 334555555555
Q ss_pred Cc
Q 042374 699 CE 700 (714)
Q Consensus 699 c~ 700 (714)
|+
T Consensus 837 N~ 838 (876)
T 4ecn_A 837 NP 838 (876)
T ss_dssp CT
T ss_pred CC
Confidence 53
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=4.5e-28 Score=275.08 Aligned_cols=337 Identities=14% Similarity=0.152 Sum_probs=186.0
Q ss_pred HHHHhcccCceEEEEeCCCCCCCCccccee---------eccCCcc--cCCCCceEEEecCCCC-CCCCCCC-CCCCccc
Q 042374 343 PQAFAKMSNLRLLKFYMPEHDGVPITSSKV---------HLDQGLE--YLPEELRYLHWHEYPL-KTLPFDF-EPENLTE 409 (714)
Q Consensus 343 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---------~~~~~~~--~l~~~l~~L~l~~~~~-~~~~~~~-~~~~L~~ 409 (714)
+..|.+|++|+.|++++|.+.+........ .++..+. .++ ++++|++++|.+ ..+|..+ .+++|++
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~-~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK-DLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT-TCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC-CCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 345777788888888877766510000000 0222222 333 566666666553 3444433 4556666
Q ss_pred ccCCCCC-Ccc--ccCC--------cccccccEEeccCCccccccCC---CCCCCCCcEEecCCCCCCccCCccccCCCC
Q 042374 410 LSLPYSK-VEQ--SWGG--------KRLLSSKFIDLSHSQYLIRMPD---LSEAPNLERINLLNCTNLVSVPSSIQNFNH 475 (714)
Q Consensus 410 L~l~~~~-i~~--~~~~--------~~~~~L~~L~l~~~~~~~~~~~---~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~ 475 (714)
|++++|+ ++. ++.. ..+++|++|++++|.+. .+|. +..+++|++|++++|... .+| .++.+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 6666665 443 2211 11335555555555554 3332 555555555555555433 444 4555555
Q ss_pred CCEEecCCCCCCCccCCCCC-CCC-CcEEEeCCCcCCCcccccc----------------------------------cc
Q 042374 476 LSMLCFEGCKSLRSFPSNLH-FVC-PVTINCGGCVNLTEFPQIS----------------------------------GS 519 (714)
Q Consensus 476 L~~L~l~~~~~~~~~~~~~~-~~~-L~~L~l~~~~~l~~~~~~~----------------------------------~~ 519 (714)
|+.|++++|... .+|..+. +.+ |+.|+++++. +..+|... .+
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred ceEEECcCCccc-cchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 555555554433 4444333 444 5555555443 22333221 24
Q ss_pred cceEecccccceEecccc-CCCCCCcEEecCCCCCCccccccccC--------CCCCCEEEecCCCCCCCCchhhh--cc
Q 042374 520 VTKLILWETAIKEVPSSV-GCLTNLKVLSLSQCPRLKRISTSILK--------LKSLQNLYLIQCFDLENFPEILE--KM 588 (714)
Q Consensus 520 L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~l~--~l 588 (714)
|+.|++++|.+..+|..+ ..+++|+.|++++|.+. .+|..+.. +++|+.|++++|.+. .+|..+. .+
T Consensus 675 L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l 752 (876)
T 4ecn_A 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTL 752 (876)
T ss_dssp EEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTC
T ss_pred cCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccC
Confidence 555555555555555543 25555666666555543 44433322 125666666655544 4555554 55
Q ss_pred ccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccC------CCcCc-----CCCCCCCCEEECCCCCC
Q 042374 589 EYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYL------RNYAL-----NGCLSSLEYLDLSGNDF 657 (714)
Q Consensus 589 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~------~~~~~-----~~~l~~L~~L~L~~n~l 657 (714)
++|+.|++++|.+..+ |..+..+++|+.|+|++ |.+.. ++.+++|+.|+|++|++
T Consensus 753 ~~L~~L~Ls~N~L~~l--------------p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 753 PYLSNMDVSYNCFSSF--------------PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp TTCCEEECCSSCCSSC--------------CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CCcCEEEeCCCCCCcc--------------chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 6666666666655544 44488999999999987 44432 56789999999999999
Q ss_pred cccchhhccCCCCCeeccccCccccccCCC-----c------CcccEeecccCcccc
Q 042374 658 ESLPASIKQLSRLRKLHLCYCDKLQSIPEL-----P------LSLKWLDASNCERLQ 703 (714)
Q Consensus 658 ~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~-----~------~~L~~L~l~~c~~l~ 703 (714)
+.+|..+. ++|+.|+|++|++...-+.. . ..-+..+|.+|+.+.
T Consensus 819 ~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~L~ 873 (876)
T 4ecn_A 819 RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALG 873 (876)
T ss_dssp CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCCCcc
Confidence 99998765 69999999999976433221 1 112334677887664
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=6.6e-29 Score=277.75 Aligned_cols=303 Identities=15% Similarity=0.123 Sum_probs=254.6
Q ss_pred CCCCCCCCC-CCCCcccccCCCCCCcc------------------ccCCc---ccccccEEeccCCccccccC-CCCCCC
Q 042374 394 PLKTLPFDF-EPENLTELSLPYSKVEQ------------------SWGGK---RLLSSKFIDLSHSQYLIRMP-DLSEAP 450 (714)
Q Consensus 394 ~~~~~~~~~-~~~~L~~L~l~~~~i~~------------------~~~~~---~~~~L~~L~l~~~~~~~~~~-~~~~l~ 450 (714)
.+..+|..+ .+++|++|++++|.++. ++... .+++|++|++++|.+....| .+.+++
T Consensus 194 ~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 273 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred CCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC
Confidence 344466655 78899999999999998 66543 48999999999999888888 589999
Q ss_pred CCcEEecCCCC-CCc-cCCccccCC------CCCCEEecCCCCCCCccCC--CCC-CCCCcEEEeCCCcCCCcccc--cc
Q 042374 451 NLERINLLNCT-NLV-SVPSSIQNF------NHLSMLCFEGCKSLRSFPS--NLH-FVCPVTINCGGCVNLTEFPQ--IS 517 (714)
Q Consensus 451 ~L~~L~L~~~~-~~~-~lp~~~~~l------~~L~~L~l~~~~~~~~~~~--~~~-~~~L~~L~l~~~~~l~~~~~--~~ 517 (714)
+|++|++++|. ... .+|..++++ ++|++|++++|... .+|. .+. +.+|+.|+++++..-..+|. ..
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l 352 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSE 352 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEE
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCC
Confidence 99999999997 555 688888876 99999999998665 8888 555 89999999998764436662 23
Q ss_pred cccceEecccccceEeccccCCCCC-CcEEecCCCCCCccccccccCCC--CCCEEEecCCCCCCCCchhhh-------c
Q 042374 518 GSVTKLILWETAIKEVPSSVGCLTN-LKVLSLSQCPRLKRISTSILKLK--SLQNLYLIQCFDLENFPEILE-------K 587 (714)
Q Consensus 518 ~~L~~L~l~~~~i~~lp~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~l~-------~ 587 (714)
.+|++|++++|.+..+|..+..+++ |++|++++|.+. .+|..+..++ +|+.|++++|.+.+..|..+. .
T Consensus 353 ~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~ 431 (636)
T 4eco_A 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431 (636)
T ss_dssp EEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCC
T ss_pred CCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccccccc
Confidence 5899999999999999999999999 999999999876 7888877655 899999999999888888887 7
Q ss_pred cccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCcCCC------------CCCCCEEECCCC
Q 042374 588 MEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYALNGC------------LSSLEYLDLSGN 655 (714)
Q Consensus 588 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~------------l~~L~~L~L~~n 655 (714)
+++|++|++++|.+..+|..+ +..+++|+.|++++|.+..+.. +++|+.|+|++|
T Consensus 432 ~~~L~~L~Ls~N~l~~lp~~~-------------~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 432 GINVSSINLSNNQISKFPKEL-------------FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp CCCEEEEECCSSCCCSCCTHH-------------HHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred CCCCCEEECcCCccCcCCHHH-------------HccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC
Confidence 889999999999999888765 6678999999999999876321 229999999999
Q ss_pred CCcccchhhc--cCCCCCeeccccCccccccCC---CcCcccEeecc------cCcccccccCccccc
Q 042374 656 DFESLPASIK--QLSRLRKLHLCYCDKLQSIPE---LPLSLKWLDAS------NCERLQTFPEISSYL 712 (714)
Q Consensus 656 ~l~~lp~~l~--~l~~L~~L~l~~~~~~~~lp~---~~~~L~~L~l~------~c~~l~~lp~~~~~~ 712 (714)
+++.+|..+. .+++|++|+|++|++.+ +|. .+++|+.|+++ +|...+.+|..+..+
T Consensus 499 ~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l 565 (636)
T 4eco_A 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565 (636)
T ss_dssp CCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGC
T ss_pred cCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcC
Confidence 9999999887 99999999999999876 775 35799999995 455677888777654
No 13
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.96 E-value=3.8e-28 Score=270.38 Aligned_cols=250 Identities=21% Similarity=0.311 Sum_probs=185.3
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHH--H-hhccc-ceEEeeechhcccccChHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQ--I-SRHFQ-GKCFMANVREESNKMGAIHVR 130 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~--~-~~~f~-~~~~~~~~~~~~~~~~~~~~~ 130 (714)
.++.||||+.++++|.+++....++.++|+|+||||+||||||.+++++ + +.+|. .++|+... ... ...+...+
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~-~~~-~~~~~~~l 199 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVG-KQD-KSGLLMKL 199 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEE-SCC-HHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECC-CCc-hHHHHHHH
Confidence 5678999999999999999765556889999999999999999999974 3 77895 67887632 111 11122222
Q ss_pred HHHHHHHhCCC----CCcccchhhH-HHHHHHhcC--CcEEEEEeCCCCCHHHHHHHhcCCCCCCCCcEEEEEcCChhHH
Q 042374 131 DEVISQVLGDK----NLKIGTLVIH-QNIRKRLRQ--VKMLIVLDAVHDGFTQLESLAGELDKFTTGSRIIITTRDKQVL 203 (714)
Q Consensus 131 ~~~~~~~~~~~----~~~~~~~~~~-~~l~~~l~~--k~~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~v~ 203 (714)
.++... ++.. .......+.. ..+.+.+.+ +++||||||+|+. ..+.. ..+|++||||||+..++
T Consensus 200 ~~l~~~-l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-~~l~~-------l~~~~~ilvTsR~~~~~ 270 (591)
T 1z6t_A 200 QNLCTR-LDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-WVLKA-------FDSQCQILLTTRDKSVT 270 (591)
T ss_dssp HHHHHH-HCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-HHHHT-------TCSSCEEEEEESCGGGG
T ss_pred HHHHHH-hccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-HHHHH-------hcCCCeEEEECCCcHHH
Confidence 233333 3321 1122233334 667777765 7899999999986 44432 25789999999999887
Q ss_pred HhcCCCeEEec---CCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHhhhhhccCCHHHHHHHHHHH
Q 042374 204 DKCGVNYVYEV---EGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVLGSSLYQKSKQQWEDRLHNL 280 (714)
Q Consensus 204 ~~~~~~~~~~l---~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~l~~l 280 (714)
..+. ...+++ ++|+.+|+++||...++... ....+.+.+|+++|+|+|+|++.+|+.++... ..|...++.+
T Consensus 271 ~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~---~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l 345 (591)
T 1z6t_A 271 DSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK---ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQL 345 (591)
T ss_dssp TTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG---GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHH
T ss_pred HhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc---ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHH
Confidence 6643 234444 58999999999999875421 12235788999999999999999999998764 3688888887
Q ss_pred hcCC-----------CchHHHHHHHhhhcCchhhHhhhhhccccccCcccc
Q 042374 281 RLIS-----------EPNIYKVLKISYDELNSKEKEMFLDIACFFKGEDLD 320 (714)
Q Consensus 281 ~~~~-----------~~~~~~~l~ls~~~L~~~~k~~~~~~~~fp~~~~~~ 320 (714)
.... ...+..++..||+.|+++.|.||.++|+||+++.++
T Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~ 396 (591)
T 1z6t_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVP 396 (591)
T ss_dssp HSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEE
T ss_pred HHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccC
Confidence 6532 136888999999999999999999999999988776
No 14
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=4.4e-27 Score=243.92 Aligned_cols=272 Identities=15% Similarity=0.137 Sum_probs=175.7
Q ss_pred CCcccccCCCCCCccccCCcccccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCC
Q 042374 405 ENLTELSLPYSKVEQSWGGKRLLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGC 484 (714)
Q Consensus 405 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~ 484 (714)
++|++|++++|.++.++....+++|++|++++|.+.. .+.+..+++|++|++++|.. ..++. +..+++|++|++++|
T Consensus 66 ~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~l~~L~~L~l~~n~i-~~~~~-~~~l~~L~~L~l~~n 142 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD-ISALQNLTNLRELYLNEDNI-SDISP-LANLTKMYSLNLGAN 142 (347)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CGGGTTCTTCSEEECTTSCC-CCCGG-GTTCTTCCEEECTTC
T ss_pred CCccEEEccCCccccchhhhcCCcCCEEEccCCcccC-chHHcCCCcCCEEECcCCcc-cCchh-hccCCceeEEECCCC
Confidence 3444444444444444332224444444444444322 23344444455555544432 22222 444444555555444
Q ss_pred CCCCccCCCCCCCCCcEEEeCCCcCCCccc--ccccccceEecccccceEeccccCCCCCCcEEecCCCCCCcccccccc
Q 042374 485 KSLRSFPSNLHFVCPVTINCGGCVNLTEFP--QISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSIL 562 (714)
Q Consensus 485 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 562 (714)
.....++....+.+|+.|++++|.. ..++ ...++|+.|++++|.+..++. +..+++|+.|++++|.+....+ +.
T Consensus 143 ~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~ 218 (347)
T 4fmz_A 143 HNLSDLSPLSNMTGLNYLTVTESKV-KDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VA 218 (347)
T ss_dssp TTCCCCGGGTTCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GG
T ss_pred CCcccccchhhCCCCcEEEecCCCc-CCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hh
Confidence 4444433333344455555444321 2221 234567777777788887766 7788899999999887655433 77
Q ss_pred CCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc--
Q 042374 563 KLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL-- 640 (714)
Q Consensus 563 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-- 640 (714)
.+++|++|++++|.+.. ++. +..+++|++|++++|.+..++. +..+++|+.|++++|.+..
T Consensus 219 ~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~---------------~~~l~~L~~L~l~~n~l~~~~ 281 (347)
T 4fmz_A 219 NMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISDINA---------------VKDLTKLKMLNVGSNQISDIS 281 (347)
T ss_dssp GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG---------------GTTCTTCCEEECCSSCCCCCG
T ss_pred cCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCCChh---------------HhcCCCcCEEEccCCccCCCh
Confidence 88899999999887655 333 8888999999999988876532 6788899999999998776
Q ss_pred -CCCCCCCCEEECCCCCCccc-chhhccCCCCCeeccccCccccccC-CCcCcccEeecccCc
Q 042374 641 -NGCLSSLEYLDLSGNDFESL-PASIKQLSRLRKLHLCYCDKLQSIP-ELPLSLKWLDASNCE 700 (714)
Q Consensus 641 -~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~l~~~~~~~~lp-~~~~~L~~L~l~~c~ 700 (714)
+..+++|+.|++++|.++.. |..+.++++|++|++++|++.+..| ..+++|+.|++++|+
T Consensus 282 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 282 VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC-
T ss_pred hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhhc
Confidence 56788999999999998854 5678889999999999999766555 346889999999985
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=5.4e-27 Score=262.62 Aligned_cols=235 Identities=16% Similarity=0.133 Sum_probs=186.8
Q ss_pred CCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEeCCCcCCCcc---c---ccccc
Q 042374 446 LSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINCGGCVNLTEF---P---QISGS 519 (714)
Q Consensus 446 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~---~---~~~~~ 519 (714)
+..+++|++|++++|.. ..+| .+ .+++|++|++++|...... ....+++|+.|+++++.. ... + ...++
T Consensus 303 l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l-~~~~~~~~~~~~~~~ 377 (606)
T 3vq2_A 303 VPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNAL-SFSGCCSYSDLGTNS 377 (606)
T ss_dssp CCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCE-EEEEECCHHHHCCSC
T ss_pred ccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCcc-CCCcchhhhhccCCc
Confidence 44556778888888765 6777 45 8999999999998666655 334589999999998642 222 2 33467
Q ss_pred cceEecccccceEeccccCCCCCCcEEecCCCCCCcccc-ccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCC
Q 042374 520 VTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRIS-TSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGR 598 (714)
Q Consensus 520 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 598 (714)
|++|++++|.+..+|..+..+++|++|++++|.+.+..| ..+..+++|++|++++|.+....|..++.+++|++|++++
T Consensus 378 L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 457 (606)
T 3vq2_A 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457 (606)
T ss_dssp CCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred ccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCC
Confidence 899999999999999888999999999999988777666 5788889999999999888777788888888899999988
Q ss_pred ccccc--cCccccC----------CCCCcccCCCccCCCCCCCceeccCCCcCc-----CCCCCCCCEEECCCCCCcccc
Q 042374 599 TKIRE--LPSTFEK----------GEGTESQLPSSVADTNDLEGLSLYLRNYAL-----NGCLSSLEYLDLSGNDFESLP 661 (714)
Q Consensus 599 ~~l~~--~~~~~~~----------~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~lp 661 (714)
|.+.. +|..+.. .+...+..|..+..+++|+.|++++|.+.. ++.+++|++|+|++|+++.+|
T Consensus 458 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p 537 (606)
T 3vq2_A 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537 (606)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEE
T ss_pred CcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccC
Confidence 88875 4554432 122234456678999999999999999876 678999999999999999999
Q ss_pred hhhccCC-CCCeeccccCccccccC
Q 042374 662 ASIKQLS-RLRKLHLCYCDKLQSIP 685 (714)
Q Consensus 662 ~~l~~l~-~L~~L~l~~~~~~~~lp 685 (714)
..+..++ +|++|++++|++....+
T Consensus 538 ~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 538 GILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp SCGGGSCTTCCEEECCSCCCCCSST
T ss_pred HhHhhhcccCcEEEccCCCcccCCc
Confidence 9999997 69999999999875544
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.7e-27 Score=261.37 Aligned_cols=334 Identities=17% Similarity=0.155 Sum_probs=239.8
Q ss_pred eeCHHHHhcccCceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCCCCCCCCCCCcccccCCCCCCcc
Q 042374 340 HLSPQAFAKMSNLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTLPFDFEPENLTELSLPYSKVEQ 419 (714)
Q Consensus 340 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 419 (714)
.+.+..|..+.+|+.|++++|.+.+. .+..+..++ .+++|++++|.+..+|.. .+.+|++|++++|.+..
T Consensus 35 ~~~~~~~~~l~~L~~L~Ls~n~l~~~--------~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~ 104 (520)
T 2z7x_B 35 ELWTSDILSLSKLRILIISHNRIQYL--------DISVFKFNQ-ELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDA 104 (520)
T ss_dssp CCCHHHHTTCTTCCEEECCSSCCCEE--------EGGGGTTCT-TCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSS
T ss_pred ccChhhccccccccEEecCCCccCCc--------ChHHhhccc-CCCEEecCCCceeecCcc-ccCCccEEeccCCcccc
Confidence 34567788888888888888865432 122333333 788888888888877776 77888888888888876
Q ss_pred cc--CC-cccccccEEeccCCccccccCCCCCCCCC--cEEecCCCCC--CccCCccccC--------------------
Q 042374 420 SW--GG-KRLLSSKFIDLSHSQYLIRMPDLSEAPNL--ERINLLNCTN--LVSVPSSIQN-------------------- 472 (714)
Q Consensus 420 ~~--~~-~~~~~L~~L~l~~~~~~~~~~~~~~l~~L--~~L~L~~~~~--~~~lp~~~~~-------------------- 472 (714)
+. .. ..+++|++|++++|.+.. ..+..+++| ++|++++|.. ....|..+..
T Consensus 105 ~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~ 182 (520)
T 2z7x_B 105 LPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFIL 182 (520)
T ss_dssp CCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCC
T ss_pred ccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhh
Confidence 43 22 237888888888887654 335555666 7777777655 3333433333
Q ss_pred ------CC---------------------------------------------------------CCCEEecCCCCCCCc
Q 042374 473 ------FN---------------------------------------------------------HLSMLCFEGCKSLRS 489 (714)
Q Consensus 473 ------l~---------------------------------------------------------~L~~L~l~~~~~~~~ 489 (714)
++ +|++|++++|...+.
T Consensus 183 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 262 (520)
T 2z7x_B 183 DVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ 262 (520)
T ss_dssp CCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESC
T ss_pred hhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCc
Confidence 22 344444444433334
Q ss_pred cCCCC-----C-CCCCcEEEeCCCcCCCcccc-c------ccccceEecccccceEeccccCCCCCCcEEecCCCCCCcc
Q 042374 490 FPSNL-----H-FVCPVTINCGGCVNLTEFPQ-I------SGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKR 556 (714)
Q Consensus 490 ~~~~~-----~-~~~L~~L~l~~~~~l~~~~~-~------~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~ 556 (714)
+|..+ . +.+|+.++++++.. .+|. . ..+++.|++++|.+..++. ...+++|++|++++|.+.+.
T Consensus 263 ~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~ 339 (520)
T 2z7x_B 263 LDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDT 339 (520)
T ss_dssp CCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTT
T ss_pred cccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc-hhhCCcccEEEeECCccChh
Confidence 44443 2 45555555544332 3331 0 0347778888777765432 26889999999999999888
Q ss_pred ccccccCCCCCCEEEecCCCCCC--CCchhhhccccccccccCCccccc-cCccccCCCCCcccCCCccCCCCCCCceec
Q 042374 557 ISTSILKLKSLQNLYLIQCFDLE--NFPEILEKMEYLNYNALGRTKIRE-LPSTFEKGEGTESQLPSSVADTNDLEGLSL 633 (714)
Q Consensus 557 ~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l 633 (714)
.|..++.+++|++|++++|.+.+ .+|..++.+++|++|++++|.+.. +|... +..+++|+.|++
T Consensus 340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~-------------~~~l~~L~~L~L 406 (520)
T 2z7x_B 340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD-------------CSWTKSLLSLNM 406 (520)
T ss_dssp TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS-------------CCCCTTCCEEEC
T ss_pred hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch-------------hccCccCCEEEC
Confidence 89999999999999999998775 566789999999999999999987 76543 677899999999
Q ss_pred cCCCcCc--CCCC-CCCCEEECCCCCCcccchhhccCCCCCeeccccCccccccCCC----cCcccEeecccCccc
Q 042374 634 YLRNYAL--NGCL-SSLEYLDLSGNDFESLPASIKQLSRLRKLHLCYCDKLQSIPEL----PLSLKWLDASNCERL 702 (714)
Q Consensus 634 ~~~~~~~--~~~l-~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~----~~~L~~L~l~~c~~l 702 (714)
++|.+.. ...+ ++|+.|++++|+++.+|.++..+++|++|++++|++. .+|.. +++|+.|++++|+.-
T Consensus 407 s~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 407 SSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCc
Confidence 9999865 2233 7999999999999999999889999999999999866 67752 578999999999753
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=2.3e-27 Score=255.88 Aligned_cols=334 Identities=16% Similarity=0.110 Sum_probs=192.0
Q ss_pred cCceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCC-CCC-CCC-CCCCcccccCCCCCCccccCCcc-
Q 042374 350 SNLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLK-TLP-FDF-EPENLTELSLPYSKVEQSWGGKR- 425 (714)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~-~~~-~~~-~~~~L~~L~l~~~~i~~~~~~~~- 425 (714)
.+++.|++++|.+.+. .+..+..++ ++++|+++++.+. .++ ..+ .+++|++|++++|.+....+...
T Consensus 30 ~~l~~L~Ls~n~i~~~--------~~~~~~~l~-~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 100 (455)
T 3v47_A 30 AHVNYVDLSLNSIAEL--------NETSFSRLQ-DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN 100 (455)
T ss_dssp TTCCEEECCSSCCCEE--------CTTTTSSCT-TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT
T ss_pred CccCEEEecCCccCcC--------ChhHhccCc-cccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhcc
Confidence 4566666666654321 122233333 5666666666554 332 222 45666666666666665543322
Q ss_pred -cccccEEeccCCccccccC-C--CCCCCCCcEEecCCCCCCccCCcc-ccCCCCCCEEecCCCCCCCccCCCCC---CC
Q 042374 426 -LLSSKFIDLSHSQYLIRMP-D--LSEAPNLERINLLNCTNLVSVPSS-IQNFNHLSMLCFEGCKSLRSFPSNLH---FV 497 (714)
Q Consensus 426 -~~~L~~L~l~~~~~~~~~~-~--~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~~---~~ 497 (714)
+++|++|++++|.+....+ . +..+++|++|++++|......|.. +.++++|++|++++|......+..+. ..
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~ 180 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTC
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccc
Confidence 6666666666666554322 2 666666666666666554444444 56666666666666655444444332 24
Q ss_pred CCcEEEeCCCcCCCcccc------------cccccceEecccccceE-eccccC---CCCCCcEEecCCCCCCccc----
Q 042374 498 CPVTINCGGCVNLTEFPQ------------ISGSVTKLILWETAIKE-VPSSVG---CLTNLKVLSLSQCPRLKRI---- 557 (714)
Q Consensus 498 ~L~~L~l~~~~~l~~~~~------------~~~~L~~L~l~~~~i~~-lp~~~~---~l~~L~~L~l~~~~~~~~~---- 557 (714)
+++.|+++++... .++. ...+|++|++++|.+.. +|..+. ...+|+.|++++|...+..
T Consensus 181 ~L~~L~l~~n~l~-~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 259 (455)
T 3v47_A 181 HFTLLRLSSITLQ-DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259 (455)
T ss_dssp EEEEEECTTCBCT-TCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred cccccccccCccc-ccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchh
Confidence 5566666554322 2111 11356667776666542 222221 1244555555544322110
Q ss_pred ------ccccc--CCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCC
Q 042374 558 ------STSIL--KLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLE 629 (714)
Q Consensus 558 ------~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~ 629 (714)
+..+. ..++|++|++++|.+.+..|..++.+++|++|++++|.+..++... +..+++|+
T Consensus 260 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-------------~~~l~~L~ 326 (455)
T 3v47_A 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA-------------FWGLTHLL 326 (455)
T ss_dssp SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT-------------TTTCTTCC
T ss_pred hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhH-------------hcCcccCC
Confidence 00111 1256777777777776666677777777777777777776554322 66777777
Q ss_pred ceeccCCCcCc-----CCCCCCCCEEECCCCCCccc-chhhccCCCCCeeccccCccccccCC---CcCcccEeecccCc
Q 042374 630 GLSLYLRNYAL-----NGCLSSLEYLDLSGNDFESL-PASIKQLSRLRKLHLCYCDKLQSIPE---LPLSLKWLDASNCE 700 (714)
Q Consensus 630 ~L~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~l~~~~~~~~lp~---~~~~L~~L~l~~c~ 700 (714)
.|++++|.+.. ++.+++|++|+|++|+++.+ |.++.++++|++|++++|.+.+..+. .+++|+.|++++|+
T Consensus 327 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 77877777654 45677778888887777765 55677777788888877775543222 24677777777776
Q ss_pred cccccc
Q 042374 701 RLQTFP 706 (714)
Q Consensus 701 ~l~~lp 706 (714)
.-...|
T Consensus 407 l~~~~~ 412 (455)
T 3v47_A 407 WDCSCP 412 (455)
T ss_dssp BCCCTT
T ss_pred cccCCC
Confidence 555554
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=268.17 Aligned_cols=338 Identities=19% Similarity=0.170 Sum_probs=241.7
Q ss_pred eeCHHHHhcccCceEEEEeCCCCCCCCcccceeec-cCCcccCCCCceEEEecCCCCCCC-CCCC-CCCCcccccCCCCC
Q 042374 340 HLSPQAFAKMSNLRLLKFYMPEHDGVPITSSKVHL-DQGLEYLPEELRYLHWHEYPLKTL-PFDF-EPENLTELSLPYSK 416 (714)
Q Consensus 340 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~ 416 (714)
.+.+..|..+.+|+.|++++|...+ .+ +..+..++ ++++|++++|.+..+ |..+ .+.+|++|++++|.
T Consensus 38 ~i~~~~~~~l~~L~~LdLs~n~~~~--------~i~~~~f~~L~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~ 108 (844)
T 3j0a_A 38 TVTASSFPFLEQLQLLELGSQYTPL--------TIDKEAFRNLP-NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG 108 (844)
T ss_dssp EECSSSCSSCCSCSEEEECTTCCCC--------EECTTTTSSCT-TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCC
T ss_pred ccChhHCcccccCeEEeCCCCCCcc--------ccCHHHhcCCC-CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCC
Confidence 4556778889999999998874322 12 23444444 789999999988876 5555 78899999999998
Q ss_pred Ccccc-C---CcccccccEEeccCCccccccC--CCCCCCCCcEEecCCCCCCccCCccccCC--CCCCEEecCCCCCCC
Q 042374 417 VEQSW-G---GKRLLSSKFIDLSHSQYLIRMP--DLSEAPNLERINLLNCTNLVSVPSSIQNF--NHLSMLCFEGCKSLR 488 (714)
Q Consensus 417 i~~~~-~---~~~~~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~lp~~~~~l--~~L~~L~l~~~~~~~ 488 (714)
+.... . ...+++|++|++++|.+....+ .|+++++|++|++++|......+..+..+ ++|+.|++++|....
T Consensus 109 l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~ 188 (844)
T 3j0a_A 109 LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS 188 (844)
T ss_dssp CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCC
T ss_pred CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccc
Confidence 88632 2 2238899999999998876654 48889999999999987766677777776 788888888877666
Q ss_pred ccCCCCC-CC------CCcEEEeCCCcCCCccc----------------------------------------c-ccccc
Q 042374 489 SFPSNLH-FV------CPVTINCGGCVNLTEFP----------------------------------------Q-ISGSV 520 (714)
Q Consensus 489 ~~~~~~~-~~------~L~~L~l~~~~~l~~~~----------------------------------------~-~~~~L 520 (714)
..|..+. +. .|+.|+++++..-...+ . ...++
T Consensus 189 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L 268 (844)
T 3j0a_A 189 RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSV 268 (844)
T ss_dssp CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCC
T ss_pred ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCc
Confidence 5554432 22 37888887762111110 0 02478
Q ss_pred ceEecccccceEec-cccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCc
Q 042374 521 TKLILWETAIKEVP-SSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRT 599 (714)
Q Consensus 521 ~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 599 (714)
+.|++++|.+..++ ..+..+++|+.|++++|.+.+..|..+.++++|++|++++|.+....|..+..+++|++|++++|
T Consensus 269 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 348 (844)
T 3j0a_A 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348 (844)
T ss_dssp CEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSC
T ss_pred cEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCC
Confidence 89999999988774 45888999999999999888877888999999999999999887777888999999999999999
Q ss_pred cccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCcCCCCCCCCEEECCCCCCcccchh----------------
Q 042374 600 KIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYALNGCLSSLEYLDLSGNDFESLPAS---------------- 663 (714)
Q Consensus 600 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~---------------- 663 (714)
.+..++... +..+++|+.|++++|.+..+..+++|+.|++++|+++.+|..
T Consensus 349 ~i~~~~~~~-------------~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~ 415 (844)
T 3j0a_A 349 HIAIIQDQT-------------FKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLEN 415 (844)
T ss_dssp CCCCCCSSC-------------SCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCS
T ss_pred CCCccChhh-------------hcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCcccc
Confidence 988776543 666777777777777776655556666666555555544322
Q ss_pred ------hccCCCCCeeccccCcccccc----CCCcCcccEeecccC
Q 042374 664 ------IKQLSRLRKLHLCYCDKLQSI----PELPLSLKWLDASNC 699 (714)
Q Consensus 664 ------l~~l~~L~~L~l~~~~~~~~l----p~~~~~L~~L~l~~c 699 (714)
+.++++|++|++++|.+.... +..+++|+.|++++|
T Consensus 416 l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N 461 (844)
T 3j0a_A 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461 (844)
T ss_dssp STTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESC
T ss_pred CchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCC
Confidence 335667777777777654221 122345555555554
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=2.7e-27 Score=261.80 Aligned_cols=355 Identities=16% Similarity=0.126 Sum_probs=224.9
Q ss_pred eeCHHHHhcccCceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCCCCCC-C-CCCCcccccCCCCCC
Q 042374 340 HLSPQAFAKMSNLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTLPFD-F-EPENLTELSLPYSKV 417 (714)
Q Consensus 340 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~i 417 (714)
.+.+..|..+++|+.|++++|.+.+.. +..+..++ ++++|++++|.+..++.. + .+++|++|++++|.+
T Consensus 40 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~--------~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 110 (549)
T 2z81_A 40 YIGHGDLRACANLQVLILKSSRINTIE--------GDAFYSLG-SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110 (549)
T ss_dssp EECSSTTSSCTTCCEEECTTSCCCEEC--------TTTTTTCT-TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCC
T ss_pred ccChhhhhcCCcccEEECCCCCcCccC--------hhhccccc-cCCEEECCCCccCccCHHHhccCCCCcEEECCCCcc
Confidence 344556777777777777777654321 12233333 677777777777766653 2 567777777777777
Q ss_pred cccc--C-CcccccccEEeccCCccccccC--CCCCCCCCcEEecCCCCCCccCCccccC--------------------
Q 042374 418 EQSW--G-GKRLLSSKFIDLSHSQYLIRMP--DLSEAPNLERINLLNCTNLVSVPSSIQN-------------------- 472 (714)
Q Consensus 418 ~~~~--~-~~~~~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~lp~~~~~-------------------- 472 (714)
..+. . ...+++|++|++++|......+ .+.++++|++|++++|......|..++.
T Consensus 111 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 190 (549)
T 2z81_A 111 QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI 190 (549)
T ss_dssp SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHH
T ss_pred cccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchh
Confidence 6542 1 2226777777777776444443 4677777777777776655445554443
Q ss_pred ----CCCCCEEecCCCCCCCcc--CCCC--CCCCCcEEEe----------------------------CCCcCC------
Q 042374 473 ----FNHLSMLCFEGCKSLRSF--PSNL--HFVCPVTINC----------------------------GGCVNL------ 510 (714)
Q Consensus 473 ----l~~L~~L~l~~~~~~~~~--~~~~--~~~~L~~L~l----------------------------~~~~~l------ 510 (714)
+++|++|++++|...... |..+ .+.+|+.|++ .+|...
T Consensus 191 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~ 270 (549)
T 2z81_A 191 FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN 270 (549)
T ss_dssp HHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCC
T ss_pred hHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccc
Confidence 566666666665433310 1111 1233333333 222100
Q ss_pred -------------C-------------------cccccccccceEecccccceEecccc-CCCCCCcEEecCCCCCCccc
Q 042374 511 -------------T-------------------EFPQISGSVTKLILWETAIKEVPSSV-GCLTNLKVLSLSQCPRLKRI 557 (714)
Q Consensus 511 -------------~-------------------~~~~~~~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~~~~~~ 557 (714)
+ .+....++++.|++++|.+..+|..+ ..+++|++|++++|.+.+..
T Consensus 271 ~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ 350 (549)
T 2z81_A 271 PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350 (549)
T ss_dssp CCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHH
T ss_pred ccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCcccccc
Confidence 0 00112246788888888888888776 57899999999999887766
Q ss_pred c---ccccCCCCCCEEEecCCCCCCCCc--hhhhccccccccccCCccccccCccccCC---------CCCcccCCCccC
Q 042374 558 S---TSILKLKSLQNLYLIQCFDLENFP--EILEKMEYLNYNALGRTKIRELPSTFEKG---------EGTESQLPSSVA 623 (714)
Q Consensus 558 ~---~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~~~~~~---------~~~~~~l~~~~~ 623 (714)
| ..++.+++|++|++++|.+....+ ..+..+++|++|++++|.++.+|..+... ......++..+
T Consensus 351 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~- 429 (549)
T 2z81_A 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI- 429 (549)
T ss_dssp HHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTS-
T ss_pred ccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchh-
Confidence 4 347788999999999987654321 45888999999999999998887653221 01111222211
Q ss_pred CCCCCCceeccCCCcCc-CCCCCCCCEEECCCCCCcccchhhccCCCCCeeccccCccccccCC---CcCcccEeecccC
Q 042374 624 DTNDLEGLSLYLRNYAL-NGCLSSLEYLDLSGNDFESLPASIKQLSRLRKLHLCYCDKLQSIPE---LPLSLKWLDASNC 699 (714)
Q Consensus 624 ~~~~L~~L~l~~~~~~~-~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~---~~~~L~~L~l~~c 699 (714)
.++|+.|++++|.+.. .+.+++|++|+|++|+++.+|. ...+++|++|++++|++.+..|. .+++|+.|++++|
T Consensus 430 -~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 430 -PQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp -CTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred -cCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCC
Confidence 2467777777777665 3467888888888888888886 46688888888888887665554 3467888888888
Q ss_pred ccccccc
Q 042374 700 ERLQTFP 706 (714)
Q Consensus 700 ~~l~~lp 706 (714)
+.....|
T Consensus 508 ~~~~~~~ 514 (549)
T 2z81_A 508 PWDCSCP 514 (549)
T ss_dssp CBCCCHH
T ss_pred CccCCCc
Confidence 7655444
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=3.7e-26 Score=252.83 Aligned_cols=326 Identities=17% Similarity=0.150 Sum_probs=214.8
Q ss_pred cCceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCCCC-CCC-CCCCcccccCCCCCCccccCCcccc
Q 042374 350 SNLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTLP-FDF-EPENLTELSLPYSKVEQSWGGKRLL 427 (714)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~i~~~~~~~~~~ 427 (714)
.+++.|++++|.+.+.. +..+..++ ++++|++++|.+..++ ..+ .+++|++|++++|.++.++.. .++
T Consensus 52 ~~L~~L~Ls~N~i~~~~--------~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~ 121 (562)
T 3a79_B 52 PRTKALSLSQNSISELR--------MPDISFLS-ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMA 121 (562)
T ss_dssp TTCCEEECCSSCCCCCC--------GGGTTTCT-TCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-CCT
T ss_pred CCcCEEECCCCCccccC--------hhhhccCC-CccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-ccc
Confidence 56677777777655422 11223333 5777777777776663 333 566777777777777766655 677
Q ss_pred cccEEeccCCcccccc-C-CCCCCCCCcEEecCCCCCCccCCccccCCCCC--CEEecCCCCC--CCccCCCCC------
Q 042374 428 SSKFIDLSHSQYLIRM-P-DLSEAPNLERINLLNCTNLVSVPSSIQNFNHL--SMLCFEGCKS--LRSFPSNLH------ 495 (714)
Q Consensus 428 ~L~~L~l~~~~~~~~~-~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~------ 495 (714)
+|++|++++|.+.... | .|.++++|++|++++|.... ..+..+++| ++|++++|.. ....|..+.
T Consensus 122 ~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~ 198 (562)
T 3a79_B 122 SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTV 198 (562)
T ss_dssp TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEE
T ss_pred cCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccccCcce
Confidence 7777777777765532 2 46677777777777765432 234444444 7777776654 222222211
Q ss_pred ---------------------CCCCcEEEeCCCc-----------------CCCcc---------------cc--ccccc
Q 042374 496 ---------------------FVCPVTINCGGCV-----------------NLTEF---------------PQ--ISGSV 520 (714)
Q Consensus 496 ---------------------~~~L~~L~l~~~~-----------------~l~~~---------------~~--~~~~L 520 (714)
+.+|+.++++++. .++.+ +. ...+|
T Consensus 199 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L 278 (562)
T 3a79_B 199 LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV 278 (562)
T ss_dssp EEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSE
T ss_pred EEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccc
Confidence 1223333333220 00000 00 00145
Q ss_pred ceEecccccce-Eecccc-----------------------------------------------------CCCCCCcEE
Q 042374 521 TKLILWETAIK-EVPSSV-----------------------------------------------------GCLTNLKVL 546 (714)
Q Consensus 521 ~~L~l~~~~i~-~lp~~~-----------------------------------------------------~~l~~L~~L 546 (714)
++|++++|.+. .+|..+ ..+++|++|
T Consensus 279 ~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L 358 (562)
T 3a79_B 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL 358 (562)
T ss_dssp EEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEE
T ss_pred cEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEE
Confidence 55555555544 344332 677888888
Q ss_pred ecCCCCCCccccccccCCCCCCEEEecCCCCCC--CCchhhhccccccccccCCccccc-cCccccCCCCCcccCCCccC
Q 042374 547 SLSQCPRLKRISTSILKLKSLQNLYLIQCFDLE--NFPEILEKMEYLNYNALGRTKIRE-LPSTFEKGEGTESQLPSSVA 623 (714)
Q Consensus 547 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~~~~~~~~~~l~~~~~ 623 (714)
++++|.+.+..|..+.++++|+.|++++|.+.. .+|..+.++++|++|++++|.+.. +|... +.
T Consensus 359 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~-------------~~ 425 (562)
T 3a79_B 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT-------------CA 425 (562)
T ss_dssp ECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC-------------CC
T ss_pred ECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh-------------hc
Confidence 888888877778888888889999888887654 334567888888899998888876 66543 77
Q ss_pred CCCCCCceeccCCCcCc--CCCC-CCCCEEECCCCCCcccchhhccCCCCCeeccccCccccccCCC----cCcccEeec
Q 042374 624 DTNDLEGLSLYLRNYAL--NGCL-SSLEYLDLSGNDFESLPASIKQLSRLRKLHLCYCDKLQSIPEL----PLSLKWLDA 696 (714)
Q Consensus 624 ~~~~L~~L~l~~~~~~~--~~~l-~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~----~~~L~~L~l 696 (714)
.+++|+.|++++|.+.. +..+ ++|+.|+|++|+++.+|..+.++++|++|++++|++. .+|.. +++|+.|++
T Consensus 426 ~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp CCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEEC
T ss_pred CcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEe
Confidence 88999999999999865 3344 6999999999999999998889999999999999866 67652 578999999
Q ss_pred ccCccc
Q 042374 697 SNCERL 702 (714)
Q Consensus 697 ~~c~~l 702 (714)
++|+--
T Consensus 505 ~~N~~~ 510 (562)
T 3a79_B 505 HDNPWD 510 (562)
T ss_dssp CSCCBC
T ss_pred cCCCcC
Confidence 999754
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=3.1e-26 Score=247.09 Aligned_cols=319 Identities=17% Similarity=0.167 Sum_probs=244.5
Q ss_pred HhcccCceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCCCCCCCCCCCcccccCCCCCCccccCCcc
Q 042374 346 FAKMSNLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTLPFDFEPENLTELSLPYSKVEQSWGGKR 425 (714)
Q Consensus 346 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~ 425 (714)
+..+.+|+.|++++|.+.+... +..+ .++++|+++++.+..++....+.+|++|++++|.+..++....
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~----------~~~l-~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 132 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP----------LKNL-TKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 132 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG----------GTTC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTT
T ss_pred hhhhcCCCEEECCCCccCCchh----------hhcc-ccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChHHcC
Confidence 6778889999998887655321 2333 3788899999988888765578889999999998888877555
Q ss_pred cccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEeC
Q 042374 426 LLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINCG 505 (714)
Q Consensus 426 ~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 505 (714)
+++|++|++++|.+.. .+.+..+++|++|++.++ ...++ .+.++++|++|++++|. +..++....+.+|+.|+++
T Consensus 133 l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~--~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~ 207 (466)
T 1o6v_A 133 LTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQ--VTDLK-PLANLTTLERLDISSNK-VSDISVLAKLTNLESLIAT 207 (466)
T ss_dssp CTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEES--CCCCG-GGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECC
T ss_pred CCCCCEEECCCCccCC-ChhhccCCcccEeecCCc--ccCch-hhccCCCCCEEECcCCc-CCCChhhccCCCCCEEEec
Confidence 8999999999987654 456888888999988642 23333 38888999999998875 4445544458889999998
Q ss_pred CCcCCCccc-ccccccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchh
Q 042374 506 GCVNLTEFP-QISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEI 584 (714)
Q Consensus 506 ~~~~l~~~~-~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 584 (714)
+|......+ ....+|+.|++++|.+..++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+... +.
T Consensus 208 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~- 282 (466)
T 1o6v_A 208 NNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP- 282 (466)
T ss_dssp SSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-
T ss_pred CCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-
Confidence 875333222 33567889999999888875 47788899999999988765443 78888999999998876653 33
Q ss_pred hhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc---CCCCCCCCEEECCCCCCcccc
Q 042374 585 LEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL---NGCLSSLEYLDLSGNDFESLP 661 (714)
Q Consensus 585 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~---~~~l~~L~~L~L~~n~l~~lp 661 (714)
+..+++|+.|++++|.+..++. +..+++|+.|++++|.+.. ++.+++|+.|++++|.++.++
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~---------------~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~ 347 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLEDISP---------------ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS 347 (466)
T ss_dssp GTTCTTCSEEECCSSCCSCCGG---------------GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred ccCCCccCeEEcCCCcccCchh---------------hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCch
Confidence 7888899999999988876543 6678899999999998876 567889999999999888875
Q ss_pred hhhccCCCCCeeccccCccccccC-CCcCcccEeecccCcc
Q 042374 662 ASIKQLSRLRKLHLCYCDKLQSIP-ELPLSLKWLDASNCER 701 (714)
Q Consensus 662 ~~l~~l~~L~~L~l~~~~~~~~lp-~~~~~L~~L~l~~c~~ 701 (714)
.+.++++|+.|++++|++.+..| ..+++|+.|++++|+-
T Consensus 348 -~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 348 -SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAW 387 (466)
T ss_dssp -GGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEEE
T ss_pred -hhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCcc
Confidence 57888999999999998776665 2457889999998853
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.2e-26 Score=257.99 Aligned_cols=166 Identities=17% Similarity=0.162 Sum_probs=117.4
Q ss_pred ccCCCceeeeCHHHHhcccCceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCCCCC-CC-CCCCccc
Q 042374 332 NLSKINDLHLSPQAFAKMSNLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTLPF-DF-EPENLTE 409 (714)
Q Consensus 332 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~ 409 (714)
++.......+.+..|..+++|+.|++++|.+.++. ...+..++ ++++|+++++.+..++. .+ .+.+|++
T Consensus 34 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~--------~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE--------DGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQK 104 (570)
T ss_dssp ECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEEC--------TTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred EccCCccCccChhHhhCCCCceEEECCCCcCCccC--------cccccCch-hCCEEeCcCCcCCccCHhhhcCcccccc
Confidence 33333344556678889999999999988654321 22233333 78999999998887763 34 7789999
Q ss_pred ccCCCCCCccccCC--cccccccEEeccCCcccc-ccC-CCCCCCCCcEEecCCCCCCccCCccccCCCCC----CEEec
Q 042374 410 LSLPYSKVEQSWGG--KRLLSSKFIDLSHSQYLI-RMP-DLSEAPNLERINLLNCTNLVSVPSSIQNFNHL----SMLCF 481 (714)
Q Consensus 410 L~l~~~~i~~~~~~--~~~~~L~~L~l~~~~~~~-~~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L----~~L~l 481 (714)
|++++|.++.++.. ..+++|++|++++|.+.. ..| .+.++++|++|++++|......|..++.+.+| +.|++
T Consensus 105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred ccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence 99999999887763 348999999999998765 334 58889999999999987665556677777777 78888
Q ss_pred CCCCCCCccCCCCCCCCCcEEEeCC
Q 042374 482 EGCKSLRSFPSNLHFVCPVTINCGG 506 (714)
Q Consensus 482 ~~~~~~~~~~~~~~~~~L~~L~l~~ 506 (714)
++|......|..+...+|+.|++.+
T Consensus 185 ~~n~l~~~~~~~~~~~~L~~L~l~~ 209 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEIRLHKLTLRN 209 (570)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEES
T ss_pred CCCCceecCHHHhccCcceeEeccc
Confidence 8876554444444444555555544
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=2.2e-26 Score=249.55 Aligned_cols=290 Identities=20% Similarity=0.223 Sum_probs=239.6
Q ss_pred cCCCCceEEEecCCCCCCCCC-CC-CCCCcccccCCCCCCccccCCcc--cccccEEeccCCccccccCC-CCCCCCCcE
Q 042374 380 YLPEELRYLHWHEYPLKTLPF-DF-EPENLTELSLPYSKVEQSWGGKR--LLSSKFIDLSHSQYLIRMPD-LSEAPNLER 454 (714)
Q Consensus 380 ~l~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~i~~~~~~~~--~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~ 454 (714)
.++..++.|+++++.+..++. .+ .+++|++|++++|.+..+.+... +++|++|+|++|.+....+. |.++++|++
T Consensus 29 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence 456788999999999988754 34 78899999999999998865443 89999999999988766554 789999999
Q ss_pred EecCCCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCC-CCCCcEEEeCCCcCCCccc----ccccccceEeccccc
Q 042374 455 INLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLH-FVCPVTINCGGCVNLTEFP----QISGSVTKLILWETA 529 (714)
Q Consensus 455 L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~----~~~~~L~~L~l~~~~ 529 (714)
|++++|......|..+..+++|++|++++|......+..+. +.+|+.|+++++. ++.++ ....+|+.|++.+|.
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCC
T ss_pred EECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCc
Confidence 99999987777778899999999999999876655565555 8899999998874 44444 235689999999999
Q ss_pred ceEecc-ccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccc
Q 042374 530 IKEVPS-SVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTF 608 (714)
Q Consensus 530 i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~ 608 (714)
+..++. .+..+++|+.|++++|...+.+|..+....+|++|++++|.+....+..+..+++|+.|++++|.+..++...
T Consensus 188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 267 (477)
T 2id5_A 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267 (477)
T ss_dssp CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS
T ss_pred CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh
Confidence 998866 4889999999999999888888888777789999999999876544467889999999999999998776554
Q ss_pred cCCCCCcccCCCccCCCCCCCceeccCCCcCc-----CCCCCCCCEEECCCCCCcccch-hhccCCCCCeeccccCcccc
Q 042374 609 EKGEGTESQLPSSVADTNDLEGLSLYLRNYAL-----NGCLSSLEYLDLSGNDFESLPA-SIKQLSRLRKLHLCYCDKLQ 682 (714)
Q Consensus 609 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~~~~~~ 682 (714)
+..+++|+.|+|++|.+.. +..+++|+.|+|++|+++.+|. .+..+++|++|++++|++..
T Consensus 268 -------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 268 -------------LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp -------------CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred -------------ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 7888999999999998766 5678999999999999998876 46788999999999998754
Q ss_pred c
Q 042374 683 S 683 (714)
Q Consensus 683 ~ 683 (714)
.
T Consensus 335 ~ 335 (477)
T 2id5_A 335 D 335 (477)
T ss_dssp S
T ss_pred c
Confidence 3
No 24
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=7.1e-26 Score=234.83 Aligned_cols=300 Identities=16% Similarity=0.187 Sum_probs=241.5
Q ss_pred HhcccCceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCCCCCCCCCCCcccccCCCCCCccccCCcc
Q 042374 346 FAKMSNLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTLPFDFEPENLTELSLPYSKVEQSWGGKR 425 (714)
Q Consensus 346 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~ 425 (714)
+.++.+++.|.+.++.+...+ .+..++ ++++|+++++.+..++....+++|++|++++|.+..++....
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~----------~~~~~~-~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 108 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQ----------GIEYLT-NLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQN 108 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCT----------TGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTT
T ss_pred chhcccccEEEEeCCccccch----------hhhhcC-CccEEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcC
Confidence 456788888898887654421 233333 788999999998888775578899999999999988766556
Q ss_pred cccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEeC
Q 042374 426 LLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINCG 505 (714)
Q Consensus 426 ~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 505 (714)
+++|++|++++|.+....+ +..+++|++|++++|.....++ .+..+++|++|++++|.. ..++....+++|+.|+++
T Consensus 109 l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~-~~~~~~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 109 LTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKV-KDVTPIANLTDLYSLSLN 185 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECT
T ss_pred CCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCc-CCchhhccCCCCCEEEcc
Confidence 8999999999998765444 8889999999999987666554 488999999999998754 444444458899999998
Q ss_pred CCcCCCccc--ccccccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCch
Q 042374 506 GCVNLTEFP--QISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPE 583 (714)
Q Consensus 506 ~~~~l~~~~--~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 583 (714)
+|. +..++ ....+|+.|++.+|.+..++. +..+++|++|++++|.+....+ +..+++|++|++++|.+.. + .
T Consensus 186 ~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~ 259 (347)
T 4fmz_A 186 YNQ-IEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-N 259 (347)
T ss_dssp TSC-CCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-G
T ss_pred CCc-ccccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-h
Confidence 874 44444 345689999999999998876 8899999999999998755433 8899999999999997665 3 4
Q ss_pred hhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc-----CCCCCCCCEEECCCCCCc
Q 042374 584 ILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL-----NGCLSSLEYLDLSGNDFE 658 (714)
Q Consensus 584 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-----~~~l~~L~~L~L~~n~l~ 658 (714)
.+..+++|++|++++|.++.++. +..+++|+.|++++|.+.. ++.+++|+.|++++|.++
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~~~~---------------~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSNQISDISV---------------LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCCGG---------------GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred hHhcCCCcCEEEccCCccCCChh---------------hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 68899999999999999887642 7789999999999999876 567999999999999999
Q ss_pred ccchhhccCCCCCeeccccCccc
Q 042374 659 SLPASIKQLSRLRKLHLCYCDKL 681 (714)
Q Consensus 659 ~lp~~l~~l~~L~~L~l~~~~~~ 681 (714)
.++. +..+++|++|++++|++.
T Consensus 325 ~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 325 DIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCGG-GGGCTTCSEESSSCC---
T ss_pred cccC-hhhhhccceeehhhhccc
Confidence 8877 889999999999999864
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=6.2e-26 Score=239.10 Aligned_cols=298 Identities=15% Similarity=0.116 Sum_probs=162.6
Q ss_pred ccCceEEEEeCCCCCCCCcccceeeccCC-cccCCCCceEEEecCCCCCCCCC-CC-CCCCcccccCCCCCCccccCCc-
Q 042374 349 MSNLRLLKFYMPEHDGVPITSSKVHLDQG-LEYLPEELRYLHWHEYPLKTLPF-DF-EPENLTELSLPYSKVEQSWGGK- 424 (714)
Q Consensus 349 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~i~~~~~~~- 424 (714)
+.+++.+.+.++.+.. ++.. +..++ .++.|++.++.+..++. .+ .+.+|++|++++|.+..+++..
T Consensus 44 l~~l~~l~l~~~~l~~---------l~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 113 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRK---------LPAALLDSFR-QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 113 (390)
T ss_dssp GCCCSEEEEESCEESE---------ECTHHHHHCC-CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCCceEEEecCCchhh---------CChhHhcccc-cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHh
Confidence 5677777776664322 1111 12222 56677777776666543 22 5666777777777766665543
Q ss_pred -ccccccEEeccCCccccccCC-CCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEE
Q 042374 425 -RLLSSKFIDLSHSQYLIRMPD-LSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTI 502 (714)
Q Consensus 425 -~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 502 (714)
.+++|++|++++|.+....+. |..+++|++|++++|......|..+..+++|++|++++|... .++ ...+.+|+.|
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~-~~~l~~L~~L 191 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD-LSLIPSLFHA 191 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC-GGGCTTCSEE
T ss_pred cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-ccc-ccccccccee
Confidence 266677777777766544433 466677777777766554444555666777777777665432 221 1225566666
Q ss_pred EeCCCcCCCcccccccccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCc
Q 042374 503 NCGGCVNLTEFPQISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFP 582 (714)
Q Consensus 503 ~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 582 (714)
+++++ .+..++ ...++++|++++|.+..+|... .++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..|
T Consensus 192 ~l~~n-~l~~~~-~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~ 265 (390)
T 3o6n_A 192 NVSYN-LLSTLA-IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY 265 (390)
T ss_dssp ECCSS-CCSEEE-CCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES
T ss_pred ecccc-cccccC-CCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcCh
Confidence 66553 222221 2235566666666666555432 35566666666554332 345556666666666665554445
Q ss_pred hhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc----CCCCCCCCEEECCCCCCc
Q 042374 583 EILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL----NGCLSSLEYLDLSGNDFE 658 (714)
Q Consensus 583 ~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~----~~~l~~L~~L~L~~n~l~ 658 (714)
..+..+++|++|++++|.++.+|.. +..+++|+.|++++|.+.. ++.+++|+.|+|++|.++
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~--------------~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 266 HPFVKMQRLERLYISNNRLVALNLY--------------GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp GGGTTCSSCCEEECCSSCCCEEECS--------------SSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCC
T ss_pred hHccccccCCEEECCCCcCcccCcc--------------cCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccc
Confidence 5556666666666666655544432 3344555555555555443 223455555555555555
Q ss_pred ccchhhccCCCCCeeccccCcc
Q 042374 659 SLPASIKQLSRLRKLHLCYCDK 680 (714)
Q Consensus 659 ~lp~~l~~l~~L~~L~l~~~~~ 680 (714)
.+| +..+++|++|++++|++
T Consensus 332 ~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 332 TLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp CCC--CCTTCCCSEEECCSSCE
T ss_pred eeC--chhhccCCEEEcCCCCc
Confidence 544 34455555555555553
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=7e-26 Score=251.88 Aligned_cols=273 Identities=15% Similarity=0.101 Sum_probs=143.6
Q ss_pred CceEEEecCCCCCCCCC-CC-CCCCcccccCCCCCCccccCCcc--cccccEEeccCCccccccCC-CCCCCCCcEEecC
Q 042374 384 ELRYLHWHEYPLKTLPF-DF-EPENLTELSLPYSKVEQSWGGKR--LLSSKFIDLSHSQYLIRMPD-LSEAPNLERINLL 458 (714)
Q Consensus 384 ~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~i~~~~~~~~--~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~L~ 458 (714)
.++.|++.++.+..++. .+ .+.+|++|++++|.+..+++... +++|++|++++|.+....+. |+.+++|++|+++
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence 56666666666665543 22 55666666666666666555432 66666666666665544443 4666666666666
Q ss_pred CCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEeccccC
Q 042374 459 NCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSSVG 538 (714)
Q Consensus 459 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~ 538 (714)
+|......|..++.+++|++|++++|... .++ ...+.+|+.|+++++ .+..++ ...+|+.|++++|.+..+|..+.
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~-~~~l~~L~~L~l~~n-~l~~l~-~~~~L~~L~ls~n~l~~~~~~~~ 231 (597)
T 3oja_B 156 NNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD-LSLIPSLFHANVSYN-LLSTLA-IPIAVEELDASHNSINVVRGPVN 231 (597)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC-GGGCTTCSEEECCSS-CCSEEE-CCTTCSEEECCSSCCCEEECSCC
T ss_pred CCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC-hhhhhhhhhhhcccC-cccccc-CCchhheeeccCCcccccccccC
Confidence 66554444455666666666666665432 222 112455555555553 222221 22345555555555555554332
Q ss_pred CCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccC
Q 042374 539 CLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQL 618 (714)
Q Consensus 539 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l 618 (714)
++|+.|++++|.+.+ +..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+..+|..
T Consensus 232 --~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~----------- 296 (597)
T 3oja_B 232 --VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY----------- 296 (597)
T ss_dssp --SCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECS-----------
T ss_pred --CCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcc-----------
Confidence 455556665555433 23455555566666555555544455555555555555555555544332
Q ss_pred CCccCCCCCCCceeccCCCcCc----CCCCCCCCEEECCCCCCcccchhhccCCCCCeeccccCcc
Q 042374 619 PSSVADTNDLEGLSLYLRNYAL----NGCLSSLEYLDLSGNDFESLPASIKQLSRLRKLHLCYCDK 680 (714)
Q Consensus 619 ~~~~~~~~~L~~L~l~~~~~~~----~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~~~~ 680 (714)
+..+++|+.|+|++|.+.. ++.+++|+.|+|++|.++.+| +..+++|+.|++++|++
T Consensus 297 ---~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 297 ---GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp ---SSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCE
T ss_pred ---cccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCC
Confidence 3344555555555554443 223445555555555555443 34445555555555543
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=6.6e-26 Score=244.48 Aligned_cols=333 Identities=18% Similarity=0.141 Sum_probs=262.3
Q ss_pred cCCCceeeeCHHHHhcccCceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCCC-CCCC-CCCCcccc
Q 042374 333 LSKINDLHLSPQAFAKMSNLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTL-PFDF-EPENLTEL 410 (714)
Q Consensus 333 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~-~~~~-~~~~L~~L 410 (714)
+.......+.+..|..+.+|+.|++++|.+.+. .....+..++ ++++|++++|.+..+ |..+ .+.+|++|
T Consensus 37 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~-------i~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 37 LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV-------IRNNTFRGLS-SLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp CCSSCCCEECTTTTSSCTTCCEEECCCCSTTCE-------ECTTTTTTCT-TCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred ecCCccCcCChhHhccCccccEEECcCCcccce-------ECcccccccc-cCCEEeCCCCccCccChhhccCcccCCEE
Confidence 333334455678899999999999999865421 1122334444 899999999999876 4455 78999999
Q ss_pred cCCCCCCccc--cC--CcccccccEEeccCCccccccCC--CCCCCCCcEEecCCCCCCccCCccccCC--CCCCEEecC
Q 042374 411 SLPYSKVEQS--WG--GKRLLSSKFIDLSHSQYLIRMPD--LSEAPNLERINLLNCTNLVSVPSSIQNF--NHLSMLCFE 482 (714)
Q Consensus 411 ~l~~~~i~~~--~~--~~~~~~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~lp~~~~~l--~~L~~L~l~ 482 (714)
++++|.+... .. ...+++|++|++++|.+....|. +..+++|++|++++|......|..+..+ .+|+.|+++
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 9999999863 23 23389999999999999887774 8899999999999998777777777766 689999999
Q ss_pred CCCCCCccCCC---------CCCCCCcEEEeCCCcCCCccccc------ccccceEecccccceEec-----------cc
Q 042374 483 GCKSLRSFPSN---------LHFVCPVTINCGGCVNLTEFPQI------SGSVTKLILWETAIKEVP-----------SS 536 (714)
Q Consensus 483 ~~~~~~~~~~~---------~~~~~L~~L~l~~~~~l~~~~~~------~~~L~~L~l~~~~i~~lp-----------~~ 536 (714)
+|......+.. ..+.+|+.|+++++......+.. ..+++.|+++++...... ..
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 97654433222 23578999999998654444322 257888888877543211 11
Q ss_pred cC--CCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCC
Q 042374 537 VG--CLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGT 614 (714)
Q Consensus 537 ~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~ 614 (714)
+. ..++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+..++...
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------ 342 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM------ 342 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG------
T ss_pred cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhH------
Confidence 11 2368999999999998888889999999999999999988777888999999999999999998775443
Q ss_pred cccCCCccCCCCCCCceeccCCCcCc-----CCCCCCCCEEECCCCCCcccch-hhccCCCCCeeccccCccccccCC
Q 042374 615 ESQLPSSVADTNDLEGLSLYLRNYAL-----NGCLSSLEYLDLSGNDFESLPA-SIKQLSRLRKLHLCYCDKLQSIPE 686 (714)
Q Consensus 615 ~~~l~~~~~~~~~L~~L~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~~~~~~~lp~ 686 (714)
+..+++|+.|++++|.+.. ++.+++|++|+|++|+++.+|. .+..+++|++|++++|++....|.
T Consensus 343 -------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 343 -------FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp -------GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred -------hcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 7889999999999999866 5678999999999999999886 458899999999999999888874
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=1.1e-25 Score=243.92 Aligned_cols=302 Identities=15% Similarity=0.084 Sum_probs=247.7
Q ss_pred eEEEecCCCCCCCCCCCCCCCcccccCCCCCCccccCCcc--cccccEEeccCCccccccC-CCCCCCCCcEEecCCCCC
Q 042374 386 RYLHWHEYPLKTLPFDFEPENLTELSLPYSKVEQSWGGKR--LLSSKFIDLSHSQYLIRMP-DLSEAPNLERINLLNCTN 462 (714)
Q Consensus 386 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~--~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~ 462 (714)
+.++.++..+..+|..+ +.+++.|++++|+++.+..... +++|++|+|++|.+....+ .|.++++|++|+|++|..
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 45777788888888755 4689999999999998875443 9999999999999887766 589999999999999865
Q ss_pred CccCCccccCCCCCCEEecCCCCCCCccCCCCC-CCCCcEEEeCCCcCCCccc---ccccccceEecccccceEeccc-c
Q 042374 463 LVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLH-FVCPVTINCGGCVNLTEFP---QISGSVTKLILWETAIKEVPSS-V 537 (714)
Q Consensus 463 ~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~---~~~~~L~~L~l~~~~i~~lp~~-~ 537 (714)
....+..+.++++|++|++++|......+..+. +.+|+.|+++++......+ ....+|++|++++|.+..+|.. +
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 172 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh
Confidence 433335678999999999999877666666665 8999999998864322212 2346899999999999988765 8
Q ss_pred CCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCccc
Q 042374 538 GCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQ 617 (714)
Q Consensus 538 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 617 (714)
..+++|+.|++++|.+....+..+..+++|+.|++++|.....+|.......+|++|++++|.++.+|...
T Consensus 173 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--------- 243 (477)
T 2id5_A 173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA--------- 243 (477)
T ss_dssp TTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHH---------
T ss_pred cccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHH---------
Confidence 89999999999999887777778999999999999999888878777777779999999999998887544
Q ss_pred CCCccCCCCCCCceeccCCCcCc-----CCCCCCCCEEECCCCCCccc-chhhccCCCCCeeccccCccccccCC---Cc
Q 042374 618 LPSSVADTNDLEGLSLYLRNYAL-----NGCLSSLEYLDLSGNDFESL-PASIKQLSRLRKLHLCYCDKLQSIPE---LP 688 (714)
Q Consensus 618 l~~~~~~~~~L~~L~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~l~~~~~~~~lp~---~~ 688 (714)
+..+++|+.|+|++|.+.. +..+++|+.|+|++|+++.+ |..+.++++|++|+|++|.+..-.+. .+
T Consensus 244 ----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 319 (477)
T 2id5_A 244 ----VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319 (477)
T ss_dssp ----HTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCG
T ss_pred ----hcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCC
Confidence 7889999999999998866 66789999999999999976 66788999999999999986543332 35
Q ss_pred CcccEeecccCcc
Q 042374 689 LSLKWLDASNCER 701 (714)
Q Consensus 689 ~~L~~L~l~~c~~ 701 (714)
++|+.|++++|+.
T Consensus 320 ~~L~~L~l~~N~l 332 (477)
T 2id5_A 320 GNLETLILDSNPL 332 (477)
T ss_dssp GGCCEEECCSSCE
T ss_pred cccCEEEccCCCc
Confidence 7899999999863
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=3.8e-25 Score=236.16 Aligned_cols=326 Identities=19% Similarity=0.209 Sum_probs=221.6
Q ss_pred cCceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCCCCCCCCCCCcccccCCCCCCccccCCcccccc
Q 042374 350 SNLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTLPFDFEPENLTELSLPYSKVEQSWGGKRLLSS 429 (714)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L 429 (714)
.+++.|+++++.+.+.+ .++.+++.|+++++.+..+|.. +.+|++|++++|.++.++.. .++|
T Consensus 71 ~~l~~L~l~~~~l~~lp-------------~~~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~--~~~L 133 (454)
T 1jl5_A 71 RQAHELELNNLGLSSLP-------------ELPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL--PPLL 133 (454)
T ss_dssp HTCSEEECTTSCCSCCC-------------SCCTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC--CTTC
T ss_pred cCCCEEEecCCccccCC-------------CCcCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC--CCCC
Confidence 45688888888665432 1356899999999999888764 47899999999999876543 3789
Q ss_pred cEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEeCCCcC
Q 042374 430 KFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINCGGCVN 509 (714)
Q Consensus 430 ~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 509 (714)
++|++++|.+.. +|++..+++|++|++++|... .+|..+ .+|++|++++|.. ..+|....+.+|+.|+++++.
T Consensus 134 ~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~l~-~lp~~~---~~L~~L~L~~n~l-~~l~~~~~l~~L~~L~l~~N~- 206 (454)
T 1jl5_A 134 EYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQL-EELPELQNLPFLTAIYADNNS- 206 (454)
T ss_dssp CEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCS-CCCCCC---TTCCEEECCSSCC-SSCCCCTTCTTCCEEECCSSC-
T ss_pred CEEECcCCCCCC-CcccCCCCCCCEEECCCCcCc-ccCCCc---ccccEEECcCCcC-CcCccccCCCCCCEEECCCCc-
Confidence 999999998876 668999999999999998643 466543 5899999998754 457755559999999998864
Q ss_pred CCcccccccccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccc
Q 042374 510 LTEFPQISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKME 589 (714)
Q Consensus 510 l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 589 (714)
+..+|....+|++|++++|.+..+|. ++.+++|++|++++|.+.+ +|.. +++|+.|++++|.+.+ +|.. ++
T Consensus 207 l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~ 277 (454)
T 1jl5_A 207 LKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQ 277 (454)
T ss_dssp CSSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CT
T ss_pred CCcCCCCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cC
Confidence 55677777899999999999998885 8899999999999987654 5543 4789999999987654 5543 36
Q ss_pred cccccccCCccccccCccccC---CCCCcccCCCccCCC-CCCCceeccCCCcCcCC-CCCCCCEEECCCCCCcccchhh
Q 042374 590 YLNYNALGRTKIRELPSTFEK---GEGTESQLPSSVADT-NDLEGLSLYLRNYALNG-CLSSLEYLDLSGNDFESLPASI 664 (714)
Q Consensus 590 ~L~~L~l~~~~l~~~~~~~~~---~~~~~~~l~~~~~~~-~~L~~L~l~~~~~~~~~-~l~~L~~L~L~~n~l~~lp~~l 664 (714)
+|++|++++|.++.+|..... ..-....+. .+..+ ++|+.|++++|.+..+. .+++|++|++++|+++.+|.
T Consensus 278 ~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~-~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~l~~lp~-- 354 (454)
T 1jl5_A 278 SLTFLDVSENIFSGLSELPPNLYYLNASSNEIR-SLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPE-- 354 (454)
T ss_dssp TCCEEECCSSCCSEESCCCTTCCEEECCSSCCS-EECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC--
T ss_pred cCCEEECcCCccCcccCcCCcCCEEECcCCcCC-cccCCcCcCCEEECCCCccccccccCCcCCEEECCCCccccccc--
Confidence 788999999888775532100 000000111 12223 47888888888777632 35788888888888888876
Q ss_pred ccCCCCCeeccccCcccc--ccCCCc----------------CcccEeecccCcccc--cccCccccc
Q 042374 665 KQLSRLRKLHLCYCDKLQ--SIPELP----------------LSLKWLDASNCERLQ--TFPEISSYL 712 (714)
Q Consensus 665 ~~l~~L~~L~l~~~~~~~--~lp~~~----------------~~L~~L~l~~c~~l~--~lp~~~~~~ 712 (714)
.+++|++|++++|++.+ .+|..+ ++|+.|++++|+..+ .+|..++.+
T Consensus 355 -~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 355 -LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDL 421 (454)
T ss_dssp -CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------------
T ss_pred -hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence 46788888888888766 555422 678888888875444 555555444
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=3.8e-25 Score=251.06 Aligned_cols=350 Identities=20% Similarity=0.160 Sum_probs=237.1
Q ss_pred eeCHHHHhcccCceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCCCCCC-C-CCCCcccccCCCCCC
Q 042374 340 HLSPQAFAKMSNLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTLPFD-F-EPENLTELSLPYSKV 417 (714)
Q Consensus 340 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~i 417 (714)
.+.+..|..+.+|+.|++++|.+.+.. +..+..++ .+++|++++|.+..+|.. + .+.+|++|++++|.+
T Consensus 39 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 109 (680)
T 1ziw_A 39 RLPAANFTRYSQLTSLDVGFNTISKLE--------PELCQKLP-MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109 (680)
T ss_dssp CCCGGGGGGGTTCSEEECCSSCCCCCC--------TTHHHHCT-TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred CcCHHHHhCCCcCcEEECCCCccCccC--------HHHHhccc-CcCEEECCCCccCccChhhhccCCCCCEEECCCCcc
Confidence 455677899999999999988765532 12223333 789999999999988864 4 788999999999999
Q ss_pred ccccCCcc--cccccEEeccCCccccccC-CCCCCCCCcEEecCCCCCCccCCcccc--CCCCCCEEecCCCCCCCccCC
Q 042374 418 EQSWGGKR--LLSSKFIDLSHSQYLIRMP-DLSEAPNLERINLLNCTNLVSVPSSIQ--NFNHLSMLCFEGCKSLRSFPS 492 (714)
Q Consensus 418 ~~~~~~~~--~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~--~l~~L~~L~l~~~~~~~~~~~ 492 (714)
..+++... +++|++|++++|.+....+ .+..+++|++|++++|......+..+. .+++|++|++++|......|.
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 189 (680)
T 1ziw_A 110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189 (680)
T ss_dssp CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT
T ss_pred CccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh
Confidence 88875443 8999999999998877666 478899999999999875544444443 568899999998865544444
Q ss_pred CCC-C---------------------------CCCcEEEeCCCcCCCcccccc-----cccceEecccccceEec-cccC
Q 042374 493 NLH-F---------------------------VCPVTINCGGCVNLTEFPQIS-----GSVTKLILWETAIKEVP-SSVG 538 (714)
Q Consensus 493 ~~~-~---------------------------~~L~~L~l~~~~~l~~~~~~~-----~~L~~L~l~~~~i~~lp-~~~~ 538 (714)
.+. + .+|+.|+++++......+... .+|+.|++++|.+..++ ..++
T Consensus 190 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~ 269 (680)
T 1ziw_A 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA 269 (680)
T ss_dssp GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT
T ss_pred hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc
Confidence 332 2 456666666654322222221 34889999999888775 4588
Q ss_pred CCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCC-----CCch----hhhccccccccccCCccccccCcccc
Q 042374 539 CLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLE-----NFPE----ILEKMEYLNYNALGRTKIRELPSTFE 609 (714)
Q Consensus 539 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----~~~~----~l~~l~~L~~L~l~~~~l~~~~~~~~ 609 (714)
.+++|++|++++|.+.+..|..+.++++|+.|++.+|.... .+|. .+..+++|++|++++|.+..++...
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~- 348 (680)
T 1ziw_A 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM- 348 (680)
T ss_dssp TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTT-
T ss_pred CcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhH-
Confidence 89999999999998887778888888888888888764332 2332 5777888888888888887765543
Q ss_pred CCCCCcccCCCccCCCC----------------------------CCCceeccCCCcCc-----CCCCCCCCEEECCCCC
Q 042374 610 KGEGTESQLPSSVADTN----------------------------DLEGLSLYLRNYAL-----NGCLSSLEYLDLSGND 656 (714)
Q Consensus 610 ~~~~~~~~l~~~~~~~~----------------------------~L~~L~l~~~~~~~-----~~~l~~L~~L~L~~n~ 656 (714)
+..++ +|+.|++++|.+.. +..+++|+.|++++|.
T Consensus 349 ------------~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 416 (680)
T 1ziw_A 349 ------------FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416 (680)
T ss_dssp ------------TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ------------hccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCc
Confidence 33444 45555555554433 3445666666666666
Q ss_pred Cc-ccc-hhhccCCCCCeeccccCccccccCC---CcCcccEeecccCcc--cccccCcccc
Q 042374 657 FE-SLP-ASIKQLSRLRKLHLCYCDKLQSIPE---LPLSLKWLDASNCER--LQTFPEISSY 711 (714)
Q Consensus 657 l~-~lp-~~l~~l~~L~~L~l~~~~~~~~lp~---~~~~L~~L~l~~c~~--l~~lp~~~~~ 711 (714)
++ .+| ..+.++++|++|++++|++....+. .+++|+.|++++|.. +..+|..+.+
T Consensus 417 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~ 478 (680)
T 1ziw_A 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478 (680)
T ss_dssp CEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred CccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc
Confidence 65 344 3455666666666666654433222 245667777766642 2345555443
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=5.5e-26 Score=249.36 Aligned_cols=141 Identities=16% Similarity=0.070 Sum_probs=109.3
Q ss_pred eEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCCCCC-CC-CCCCcccccCCCCCCccccCCcc--ccc
Q 042374 353 RLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTLPF-DF-EPENLTELSLPYSKVEQSWGGKR--LLS 428 (714)
Q Consensus 353 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~i~~~~~~~~--~~~ 428 (714)
+.+++++|.+..++ ..++.++++|++++|.+..++. .+ .+++|++|++++|+++.+.+... +++
T Consensus 3 ~~l~ls~n~l~~ip------------~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 70 (520)
T 2z7x_B 3 FLVDRSKNGLIHVP------------KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQE 70 (520)
T ss_dssp CEEECTTSCCSSCC------------CSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTT
T ss_pred ceEecCCCCccccc------------ccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccC
Confidence 46778777665432 1233689999999999998864 33 78999999999999998865433 999
Q ss_pred ccEEeccCCccccccCCCCCCCCCcEEecCCCCCCc-cCCccccCCCCCCEEecCCCCCCCccCCCCCCCCC--cEEEeC
Q 042374 429 SKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLV-SVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCP--VTINCG 505 (714)
Q Consensus 429 L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~ 505 (714)
|++|++++|.+.. +|.. .+++|++|++++|.... .+|..++++++|++|++++|..... ....+.+| +.|+++
T Consensus 71 L~~L~Ls~N~l~~-lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 71 LEYLDLSHNKLVK-ISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS--SVLPIAHLNISKVLLV 146 (520)
T ss_dssp CCEEECCSSCCCE-EECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG--GGGGGTTSCEEEEEEE
T ss_pred CCEEecCCCceee-cCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh--hccccccceeeEEEee
Confidence 9999999999874 5544 89999999999998665 4788999999999999999765431 12236667 999988
Q ss_pred CCcC
Q 042374 506 GCVN 509 (714)
Q Consensus 506 ~~~~ 509 (714)
++..
T Consensus 147 ~n~l 150 (520)
T 2z7x_B 147 LGET 150 (520)
T ss_dssp ECTT
T ss_pred cccc
Confidence 7644
No 32
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.9e-25 Score=248.36 Aligned_cols=198 Identities=20% Similarity=0.115 Sum_probs=138.9
Q ss_pred CCCCcEEEeCCCcCCCccc-ccccccceEecccccceEe---ccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEE
Q 042374 496 FVCPVTINCGGCVNLTEFP-QISGSVTKLILWETAIKEV---PSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLY 571 (714)
Q Consensus 496 ~~~L~~L~l~~~~~l~~~~-~~~~~L~~L~l~~~~i~~l---p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 571 (714)
+.+|+.|++.++......+ ...++|++|++++|.+..+ |..+..+++|++|++++|.+.+. +..+..+++|++|+
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~ 402 (570)
T 2z63_A 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLD 402 (570)
T ss_dssp CSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEE
T ss_pred ccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cccccccCCCCEEE
Confidence 4445555554443332222 2345677777777777655 45567777777777777765443 33477777777777
Q ss_pred ecCCCCCCCCc-hhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc------CCCC
Q 042374 572 LIQCFDLENFP-EILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL------NGCL 644 (714)
Q Consensus 572 l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~------~~~l 644 (714)
+++|.+....+ ..+..+++|++|++++|.+...+. ..+..+++|+.|++++|.+.. ++.+
T Consensus 403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l 469 (570)
T 2z63_A 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-------------GIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469 (570)
T ss_dssp CTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT-------------TTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred ccCCccccccchhhhhcCCCCCEEeCcCCcccccch-------------hhhhcCCcCcEEECcCCcCccccchhhhhcc
Confidence 77776554433 456777777888887777665433 337888999999999998752 6778
Q ss_pred CCCCEEECCCCCCccc-chhhccCCCCCeeccccCccccccCC---CcCcccEeecccCcccccccC
Q 042374 645 SSLEYLDLSGNDFESL-PASIKQLSRLRKLHLCYCDKLQSIPE---LPLSLKWLDASNCERLQTFPE 707 (714)
Q Consensus 645 ~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~l~~~~~~~~lp~---~~~~L~~L~l~~c~~l~~lp~ 707 (714)
++|++|+|++|+++.+ |.++.++++|++|++++|.+.+..|. .+++|+.|++++|+.-...|.
T Consensus 470 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 9999999999999876 77888999999999999987665554 347899999999876555553
No 33
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=2.6e-25 Score=245.89 Aligned_cols=288 Identities=16% Similarity=0.150 Sum_probs=193.9
Q ss_pred CCCCceEEEecCCCCCCCC-CCC-CCCCcccccCCCCCCccccCCcc--cccccEEeccCCccccccCC-CCCCCCCcEE
Q 042374 381 LPEELRYLHWHEYPLKTLP-FDF-EPENLTELSLPYSKVEQSWGGKR--LLSSKFIDLSHSQYLIRMPD-LSEAPNLERI 455 (714)
Q Consensus 381 l~~~l~~L~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~i~~~~~~~~--~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L 455 (714)
++..+++|+++++.+..++ ..+ .+++|++|++++|.+..+.+... +++|++|++++|.+....+. |.++++|++|
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 3457899999999888774 334 77899999999999988876433 88999999999988777665 8889999999
Q ss_pred ecCCCCCCc-cCCccccCCCCCCEEecCCCCCCCccCC-CCC-CCCCcEEEeCCCcCCCccccc---ccccceEeccccc
Q 042374 456 NLLNCTNLV-SVPSSIQNFNHLSMLCFEGCKSLRSFPS-NLH-FVCPVTINCGGCVNLTEFPQI---SGSVTKLILWETA 529 (714)
Q Consensus 456 ~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~~-~~~L~~L~l~~~~~l~~~~~~---~~~L~~L~l~~~~ 529 (714)
++++|.... ..|..++++++|++|++++|...+.+|. .+. +++|+.|+++++..-...+.. ..+|++|++.++.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 999986554 4567788999999999998876777763 343 888999998876544334433 3467888888888
Q ss_pred ceEecccc-CCCCCCcEEecCCCCCCccc--cc-----------------------------cccCCC------------
Q 042374 530 IKEVPSSV-GCLTNLKVLSLSQCPRLKRI--ST-----------------------------SILKLK------------ 565 (714)
Q Consensus 530 i~~lp~~~-~~l~~L~~L~l~~~~~~~~~--~~-----------------------------~~~~l~------------ 565 (714)
+..+|..+ ..+++|++|++++|.+.+.. |. .+..++
T Consensus 184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 87777663 56889999999988765421 00 001112
Q ss_pred -----------------------------------------------CCCEEEecCCCCCCCCchhh-hccccccccccC
Q 042374 566 -----------------------------------------------SLQNLYLIQCFDLENFPEIL-EKMEYLNYNALG 597 (714)
Q Consensus 566 -----------------------------------------------~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~ 597 (714)
+|+.|++++|.+. .+|..+ ..+++|++|+++
T Consensus 264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECC
T ss_pred cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEcc
Confidence 2333333333321 233333 345556666666
Q ss_pred Ccccccc-CccccCCCCCcccCCCccCCCCCCCceeccCCCcCc-------CCCCCCCCEEECCCCCCcccchhhccCCC
Q 042374 598 RTKIREL-PSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL-------NGCLSSLEYLDLSGNDFESLPASIKQLSR 669 (714)
Q Consensus 598 ~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-------~~~l~~L~~L~L~~n~l~~lp~~l~~l~~ 669 (714)
+|.+... |.. +..++.+++|+.|++++|.+.. ++.+++|++|++++|+++.+|..+..+++
T Consensus 343 ~N~l~~~~~~~-----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~ 411 (549)
T 2z81_A 343 ENLMVEEYLKN-----------SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK 411 (549)
T ss_dssp SSCCCHHHHHH-----------HTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTT
T ss_pred CCccccccccc-----------hhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhccccc
Confidence 5555421 100 1124566777777777777643 45667777777777777777766666666
Q ss_pred CCeeccccCcc
Q 042374 670 LRKLHLCYCDK 680 (714)
Q Consensus 670 L~~L~l~~~~~ 680 (714)
|++|++++|.+
T Consensus 412 L~~L~Ls~N~l 422 (549)
T 2z81_A 412 MRFLNLSSTGI 422 (549)
T ss_dssp CCEEECTTSCC
T ss_pred ccEEECCCCCc
Confidence 77777766664
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=4.7e-25 Score=237.86 Aligned_cols=321 Identities=18% Similarity=0.240 Sum_probs=259.3
Q ss_pred hcccCceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCCCCCCCCCCCcccccCCCCCCccccCCccc
Q 042374 347 AKMSNLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTLPFDFEPENLTELSLPYSKVEQSWGGKRL 426 (714)
Q Consensus 347 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~ 426 (714)
..+.+++.|.+.++.+...+ .+..+ .++++|+++++.+..++....+.+|++|++++|.+........+
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~----------~~~~l-~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l 111 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSID----------GVEYL-NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANL 111 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCT----------TGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTC
T ss_pred hHhccccEEecCCCCCccCc----------chhhh-cCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCC
Confidence 34678888999887654321 23333 38999999999999988755889999999999999988875569
Q ss_pred ccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEeCC
Q 042374 427 LSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINCGG 506 (714)
Q Consensus 427 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 506 (714)
++|++|++++|.+.... .+..+++|++|++++|... .++ .++.+++|++|++++ ....++....+.+|+.|++++
T Consensus 112 ~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~l~~--~~~~~~~~~~l~~L~~L~l~~ 186 (466)
T 1o6v_A 112 TNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSFGN--QVTDLKPLANLTTLERLDISS 186 (466)
T ss_dssp TTCCEEECCSSCCCCCG-GGTTCTTCSEEEEEEEEEC-CCG-GGTTCTTCSEEEEEE--SCCCCGGGTTCTTCCEEECCS
T ss_pred CCCCEEECCCCCCCCCh-HHcCCCCCCEEECCCCccC-CCh-hhccCCcccEeecCC--cccCchhhccCCCCCEEECcC
Confidence 99999999999876654 4899999999999998643 444 589999999999963 334444444589999999998
Q ss_pred CcCCCcccc--cccccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchh
Q 042374 507 CVNLTEFPQ--ISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEI 584 (714)
Q Consensus 507 ~~~l~~~~~--~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 584 (714)
+. +..++. ..++|++|++++|.+..++. ++.+++|++|++++|.+.. + ..+..+++|+.|++++|.+....+
T Consensus 187 n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~-- 260 (466)
T 1o6v_A 187 NK-VSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP-- 260 (466)
T ss_dssp SC-CCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred Cc-CCCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--
Confidence 75 444443 34689999999999998866 7889999999999998654 3 368889999999999998765433
Q ss_pred hhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc---CCCCCCCCEEECCCCCCcccc
Q 042374 585 LEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL---NGCLSSLEYLDLSGNDFESLP 661 (714)
Q Consensus 585 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~---~~~l~~L~~L~L~~n~l~~lp 661 (714)
+..+++|++|++++|.+..++. +..+++|+.|++++|.+.. ++.+++|+.|++++|+++.++
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~---------------~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~ 325 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP---------------LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS 325 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG---------------GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG
T ss_pred hhcCCCCCEEECCCCccCcccc---------------ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCch
Confidence 8899999999999999876653 6788999999999999877 567899999999999999887
Q ss_pred hhhccCCCCCeeccccCccccccCC--CcCcccEeecccCccccccc
Q 042374 662 ASIKQLSRLRKLHLCYCDKLQSIPE--LPLSLKWLDASNCERLQTFP 706 (714)
Q Consensus 662 ~~l~~l~~L~~L~l~~~~~~~~lp~--~~~~L~~L~l~~c~~l~~lp 706 (714)
. +..+++|++|++++|++.+ ++. .+++|+.|++++|+.....|
T Consensus 326 ~-~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 326 P-VSSLTKLQRLFFYNNKVSD-VSSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp G-GGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCBCGG
T ss_pred h-hccCccCCEeECCCCccCC-chhhccCCCCCEEeCCCCccCccch
Confidence 6 7899999999999998654 343 35899999999996544444
No 35
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=4.9e-25 Score=255.05 Aligned_cols=312 Identities=16% Similarity=0.100 Sum_probs=236.8
Q ss_pred cccCceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCC-CCCC-CCCC-CCCCcccccCCCCCCccccCCc
Q 042374 348 KMSNLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYP-LKTL-PFDF-EPENLTELSLPYSKVEQSWGGK 424 (714)
Q Consensus 348 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~-~~~~-~~~~-~~~~L~~L~l~~~~i~~~~~~~ 424 (714)
-..+++.|++++|.+.+. .+..+..++ .+++|+++++. ...+ |..+ .+.+|++|++++|.+..+.+..
T Consensus 22 lp~~l~~LdLs~N~i~~i--------~~~~~~~l~-~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTV--------TASSFPFLE-QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp SCTTCCEEEEESCCCCEE--------CSSSCSSCC-SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCcCEEECCCCcCCcc--------ChhHCcccc-cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 357889999999876542 123344444 79999999984 4455 4444 7889999999999999886544
Q ss_pred c--cccccEEeccCCccccccC-C--CCCCCCCcEEecCCCCCCccCC-ccccCCCCCCEEecCCCCCCCccCCCCC-C-
Q 042374 425 R--LLSSKFIDLSHSQYLIRMP-D--LSEAPNLERINLLNCTNLVSVP-SSIQNFNHLSMLCFEGCKSLRSFPSNLH-F- 496 (714)
Q Consensus 425 ~--~~~L~~L~l~~~~~~~~~~-~--~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~- 496 (714)
. +++|++|++++|.+....+ . +..+++|++|++++|......+ ..++++++|++|++++|......+..+. +
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence 3 9999999999999877554 3 8899999999999987655433 5789999999999999876666665554 3
Q ss_pred -CCCcEEEeCCCcCCCccccccc---------ccceEecccccceE-eccc-----------------------------
Q 042374 497 -VCPVTINCGGCVNLTEFPQISG---------SVTKLILWETAIKE-VPSS----------------------------- 536 (714)
Q Consensus 497 -~~L~~L~l~~~~~l~~~~~~~~---------~L~~L~l~~~~i~~-lp~~----------------------------- 536 (714)
.+|+.|+++++......+.... .|+.|++++|.+.. +|..
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l 252 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence 7899999988765444432211 38889998875431 1111
Q ss_pred -------cCC--CCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCcc
Q 042374 537 -------VGC--LTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPST 607 (714)
Q Consensus 537 -------~~~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~ 607 (714)
+.. .++|+.|++++|.+.+..+..+..+++|+.|++++|.+....|..+..+++|++|++++|.+..++..
T Consensus 253 ~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 332 (844)
T 3j0a_A 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332 (844)
T ss_dssp TTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC
T ss_pred CCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH
Confidence 111 26899999999988777788889999999999999988777778889999999999999988766433
Q ss_pred ccCCCCCcccCCCccCCCCCCCceeccCCCcCc-----CCCCCCCCEEECCCCCCcccchhhccCCCCCeeccccCcccc
Q 042374 608 FEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL-----NGCLSSLEYLDLSGNDFESLPASIKQLSRLRKLHLCYCDKLQ 682 (714)
Q Consensus 608 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~ 682 (714)
.+..+++|+.|++++|.+.. +..+++|+.|+|++|.++.++. +++|+.|++++|++.
T Consensus 333 -------------~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~- 394 (844)
T 3j0a_A 333 -------------NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLV- 394 (844)
T ss_dssp -------------SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCC-
T ss_pred -------------HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcc-
Confidence 38889999999999998866 5668999999999999987764 677888888877654
Q ss_pred ccCC
Q 042374 683 SIPE 686 (714)
Q Consensus 683 ~lp~ 686 (714)
.+|.
T Consensus 395 ~l~~ 398 (844)
T 3j0a_A 395 TLPK 398 (844)
T ss_dssp CCCC
T ss_pred cccc
Confidence 4444
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=4e-25 Score=244.55 Aligned_cols=328 Identities=16% Similarity=0.115 Sum_probs=212.1
Q ss_pred ccCceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCCCCC-CC-CCCCcccccCCCCCCccccCCcc-
Q 042374 349 MSNLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTLPF-DF-EPENLTELSLPYSKVEQSWGGKR- 425 (714)
Q Consensus 349 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~i~~~~~~~~- 425 (714)
+...+.++++++.+..++ ..++..++.|++++|.+..++. .+ .+++|++|++++|.++.+.+...
T Consensus 30 ~~~~~~l~ls~~~L~~ip------------~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 97 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVP------------KDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL 97 (562)
T ss_dssp ---CCEEECTTSCCCSCC------------TTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTT
T ss_pred cCCCcEEEcCCCCCccCC------------CCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhC
Confidence 334478888888765432 1234689999999999998874 34 78999999999999999876543
Q ss_pred -cccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCc-cCCccccCCCCCCEEecCCCCCCCccCCCCCCCCC--cE
Q 042374 426 -LLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLV-SVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCP--VT 501 (714)
Q Consensus 426 -~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L--~~ 501 (714)
+++|++|++++|.+.. +|.. .+++|++|++++|.... ..|..++++++|++|++++|..... ....+.+| +.
T Consensus 98 ~l~~L~~L~Ls~N~l~~-lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~ 173 (562)
T 3a79_B 98 FNQDLEYLDVSHNRLQN-ISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSC 173 (562)
T ss_dssp TCTTCCEEECTTSCCCE-ECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEE
T ss_pred CCCCCCEEECCCCcCCc-cCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeE
Confidence 8999999999999874 4544 89999999999987654 3457899999999999999765432 12225555 99
Q ss_pred EEeCCCcC--CCccccc-----------------------------ccccceEeccccc---------------------
Q 042374 502 INCGGCVN--LTEFPQI-----------------------------SGSVTKLILWETA--------------------- 529 (714)
Q Consensus 502 L~l~~~~~--l~~~~~~-----------------------------~~~L~~L~l~~~~--------------------- 529 (714)
|+++++.. ....+.. ..+|+.|++.+|.
T Consensus 174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~ 253 (562)
T 3a79_B 174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN 253 (562)
T ss_dssp EEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEE
T ss_pred EEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceE
Confidence 99887654 2221211 2344555555542
Q ss_pred ------------ceEeccccCCCCCCcEEecCCCCCCccccccc------------------------------------
Q 042374 530 ------------IKEVPSSVGCLTNLKVLSLSQCPRLKRISTSI------------------------------------ 561 (714)
Q Consensus 530 ------------i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~------------------------------------ 561 (714)
+..++..+ ...+|++|++++|.+.+.+|..+
T Consensus 254 L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~ 332 (562)
T 3a79_B 254 VTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332 (562)
T ss_dssp EEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCC
T ss_pred EEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCc
Confidence 00111111 12378888888887766666554
Q ss_pred -----------------cCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCC
Q 042374 562 -----------------LKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVAD 624 (714)
Q Consensus 562 -----------------~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 624 (714)
..+++|++|++++|.+.+..|..++++++|++|++++|.++.++. +|..+..
T Consensus 333 L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----------~~~~~~~ 401 (562)
T 3a79_B 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK-----------VALMTKN 401 (562)
T ss_dssp CSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTH-----------HHHTTTT
T ss_pred ceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCccc-----------chhhhcC
Confidence 445566666666666555555556666666666666666654432 1222566
Q ss_pred CCCCCceeccCCCcCc------CCCCCCCCEEECCCCCCc-ccchhhccCCCCCeeccccCccccccCC---CcCcccEe
Q 042374 625 TNDLEGLSLYLRNYAL------NGCLSSLEYLDLSGNDFE-SLPASIKQLSRLRKLHLCYCDKLQSIPE---LPLSLKWL 694 (714)
Q Consensus 625 ~~~L~~L~l~~~~~~~------~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~l~~~~~~~~lp~---~~~~L~~L 694 (714)
+++|+.|++++|.+.. +..+++|+.|++++|+++ .+|..+. ++|++|++++|.+. .+|. .+++|+.|
T Consensus 402 l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L 478 (562)
T 3a79_B 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQEL 478 (562)
T ss_dssp CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEE
T ss_pred CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEE
Confidence 6677777777776654 445667777777777665 3333322 56777777777543 5554 23567777
Q ss_pred ecccCcccccccCc
Q 042374 695 DASNCERLQTFPEI 708 (714)
Q Consensus 695 ~l~~c~~l~~lp~~ 708 (714)
++++| .++.+|..
T Consensus 479 ~L~~N-~l~~l~~~ 491 (562)
T 3a79_B 479 NVASN-QLKSVPDG 491 (562)
T ss_dssp ECCSS-CCCCCCTT
T ss_pred ECCCC-CCCCCCHH
Confidence 77776 46666654
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=5.8e-25 Score=231.63 Aligned_cols=296 Identities=14% Similarity=0.056 Sum_probs=239.3
Q ss_pred CCceEEEecCCCCCCCCCCC--CCCCcccccCCCCCCccccCCcc--cccccEEeccCCccccccCC-CCCCCCCcEEec
Q 042374 383 EELRYLHWHEYPLKTLPFDF--EPENLTELSLPYSKVEQSWGGKR--LLSSKFIDLSHSQYLIRMPD-LSEAPNLERINL 457 (714)
Q Consensus 383 ~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~--~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~L 457 (714)
.+++.+++.++.+..+|... .+++|++|++++|.+..++.... +++|++|++++|.+....+. +..+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 37889999999999988764 67899999999999998876443 99999999999998877764 889999999999
Q ss_pred CCCCCCccCCcc-ccCCCCCCEEecCCCCCCCccCCCCC-CCCCcEEEeCCCcCCCcccccccccceEecccccceEecc
Q 042374 458 LNCTNLVSVPSS-IQNFNHLSMLCFEGCKSLRSFPSNLH-FVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPS 535 (714)
Q Consensus 458 ~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~ 535 (714)
++|... .+|.. ++++++|++|++++|......|..+. +++|+.|+++++..-..-....++|+.|++++|.+..++
T Consensus 125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~- 202 (390)
T 3o6n_A 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA- 202 (390)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE-
T ss_pred CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC-
Confidence 998644 56654 58999999999999876555555554 899999999886533322355678999999999888764
Q ss_pred ccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCc
Q 042374 536 SVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTE 615 (714)
Q Consensus 536 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~ 615 (714)
...+|+.|++++|.+... |.. ..++|+.|++++|.+... ..+..+++|++|++++|.++.++..
T Consensus 203 ---~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~-------- 266 (390)
T 3o6n_A 203 ---IPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH-------- 266 (390)
T ss_dssp ---CCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG--------
T ss_pred ---CCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh--------
Confidence 346899999999876543 433 357899999999987653 5788999999999999998766332
Q ss_pred ccCCCccCCCCCCCceeccCCCcCc----CCCCCCCCEEECCCCCCcccchhhccCCCCCeeccccCccccccCCCcCcc
Q 042374 616 SQLPSSVADTNDLEGLSLYLRNYAL----NGCLSSLEYLDLSGNDFESLPASIKQLSRLRKLHLCYCDKLQSIPELPLSL 691 (714)
Q Consensus 616 ~~l~~~~~~~~~L~~L~l~~~~~~~----~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~~~~L 691 (714)
.+..+++|+.|++++|.+.. .+.+++|+.|+|++|+++.+|..+..+++|++|++++|++...-...+++|
T Consensus 267 -----~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L 341 (390)
T 3o6n_A 267 -----PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTL 341 (390)
T ss_dssp -----GGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCC
T ss_pred -----HccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeCchhhccC
Confidence 27889999999999999876 456899999999999999999889999999999999998754434567899
Q ss_pred cEeecccCcc
Q 042374 692 KWLDASNCER 701 (714)
Q Consensus 692 ~~L~l~~c~~ 701 (714)
+.|++++|+.
T Consensus 342 ~~L~l~~N~~ 351 (390)
T 3o6n_A 342 KNLTLSHNDW 351 (390)
T ss_dssp SEEECCSSCE
T ss_pred CEEEcCCCCc
Confidence 9999999863
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=1.7e-24 Score=245.75 Aligned_cols=315 Identities=17% Similarity=0.065 Sum_probs=157.4
Q ss_pred CceEEEecCCCCCCCCCC-C-CCCCcccccCCCCCCccccCCc--ccccccEEeccCCccccccC-CCCCCCCCcEEecC
Q 042374 384 ELRYLHWHEYPLKTLPFD-F-EPENLTELSLPYSKVEQSWGGK--RLLSSKFIDLSHSQYLIRMP-DLSEAPNLERINLL 458 (714)
Q Consensus 384 ~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~i~~~~~~~--~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~ 458 (714)
.+++|+++++.+..++.. + .+.+|++|++++|.++.++... .+++|++|++++|.+....+ .|.++++|++|+++
T Consensus 50 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 129 (680)
T 1ziw_A 50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129 (680)
T ss_dssp TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECC
T ss_pred cCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECC
Confidence 455555555555444322 1 3455555555555555544422 25555555555555444333 25555555555555
Q ss_pred CCCCCccCCccccCCCCCCEEecCCCCCCCccCCC---CCCCCCcEEEeCCCcCCCccccc-------------------
Q 042374 459 NCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSN---LHFVCPVTINCGGCVNLTEFPQI------------------- 516 (714)
Q Consensus 459 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~------------------- 516 (714)
+|......|..++++++|++|++++|......+.. ..+.+|+.|+++++..-...+..
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~ 209 (680)
T 1ziw_A 130 HNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209 (680)
T ss_dssp SSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHH
T ss_pred CCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccCh
Confidence 55444444444555555555555554332222211 12345555555544211111100
Q ss_pred -----------ccccceEecccccceEec-cccCCCC--CCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCc
Q 042374 517 -----------SGSVTKLILWETAIKEVP-SSVGCLT--NLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFP 582 (714)
Q Consensus 517 -----------~~~L~~L~l~~~~i~~lp-~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 582 (714)
..+|+.|++++|.+..++ ..+..++ +|+.|++++|.+.+..|..++.+++|++|++++|.+.+..|
T Consensus 210 ~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 289 (680)
T 1ziw_A 210 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289 (680)
T ss_dssp HHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECT
T ss_pred hhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccCh
Confidence 023344444444444332 2233332 25555555554444444444455555555555554444444
Q ss_pred hhhhccccccccccCCccccccCccccCCCCCcccCCC----ccCCCCCCCceeccCCCcCc-----CCCCCCCCEEECC
Q 042374 583 EILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPS----SVADTNDLEGLSLYLRNYAL-----NGCLSSLEYLDLS 653 (714)
Q Consensus 583 ~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~----~~~~~~~L~~L~l~~~~~~~-----~~~l~~L~~L~L~ 653 (714)
..+..+++|++|++++|.....- ....+|. .+..+++|+.|++++|.+.. +..+++|++|+++
T Consensus 290 ~~~~~l~~L~~L~L~~~~~~~~~--------~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 361 (680)
T 1ziw_A 290 HSLHGLFNVRYLNLKRSFTKQSI--------SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361 (680)
T ss_dssp TTTTTCTTCCEEECTTCBCCC--------------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECT
T ss_pred hhhcCCCCccEEeccchhhhccc--------ccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECC
Confidence 44555555555555443221000 0001221 36677888888888887765 5567788888888
Q ss_pred CCCCc--ccch-hhcc--CCCCCeeccccCccccccCC---CcCcccEeecccCccccccc
Q 042374 654 GNDFE--SLPA-SIKQ--LSRLRKLHLCYCDKLQSIPE---LPLSLKWLDASNCERLQTFP 706 (714)
Q Consensus 654 ~n~l~--~lp~-~l~~--l~~L~~L~l~~~~~~~~lp~---~~~~L~~L~l~~c~~l~~lp 706 (714)
+|.++ .++. .+.. .++|+.|++++|.+.+..|. .+++|+.|++++|.....+|
T Consensus 362 ~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 422 (680)
T 1ziw_A 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422 (680)
T ss_dssp TCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC
T ss_pred CCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC
Confidence 87643 4443 2222 35788888888887666554 35788999999986555555
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=7.3e-24 Score=226.49 Aligned_cols=328 Identities=15% Similarity=0.097 Sum_probs=216.0
Q ss_pred HHhcccCceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCCCCCCCCCCCcccccCCCCCCccccCCc
Q 042374 345 AFAKMSNLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTLPFDFEPENLTELSLPYSKVEQSWGGK 424 (714)
Q Consensus 345 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 424 (714)
.+.++.+|+.|++++|.+.+.+ .+..++ .+++|+++++.+..++ ...+.+|++|++++|.++.++ ..
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~----------~l~~l~-~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~-~~ 103 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT----------GIEKLT-GLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD-VT 103 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT----------TGGGCT-TCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-CT
T ss_pred ChhHcCCCCEEEccCCCcccCh----------hhcccC-CCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee-cC
Confidence 4566778888888777665421 223333 6778888888777775 336677888888888877764 34
Q ss_pred ccccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEe
Q 042374 425 RLLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINC 504 (714)
Q Consensus 425 ~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 504 (714)
.+++|++|++++|.+... + +..+++|++|++++|.... ++ ++.+++|++|++++|..++.++ ...+.+|+.|++
T Consensus 104 ~l~~L~~L~L~~N~l~~l-~-~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l 177 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKL-D-VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDC 177 (457)
T ss_dssp TCTTCCEEECCSSCCSCC-C-CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEEC
T ss_pred CCCcCCEEECCCCcCCee-c-CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccc-cccCCcCCEEEC
Confidence 477888888888876653 3 7777888888888775433 33 7777888888888776666552 334777888887
Q ss_pred CCCcCCCccc-ccccccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCch
Q 042374 505 GGCVNLTEFP-QISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPE 583 (714)
Q Consensus 505 ~~~~~l~~~~-~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 583 (714)
+++. ++.++ ...++|+.|++++|.++.++ ++.+++|++|++++|.+.+ +| +..+++|+.|++++|.+.+. |
T Consensus 178 s~n~-l~~l~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~-~- 249 (457)
T 3bz5_A 178 SFNK-ITELDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL-D- 249 (457)
T ss_dssp CSSC-CCCCCCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C-
T ss_pred CCCc-cceeccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc-C-
Confidence 7753 44444 23456778888888777763 6777888888888877655 55 67778888888888776553 2
Q ss_pred hhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc-------------CCCCCCCCEE
Q 042374 584 ILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL-------------NGCLSSLEYL 650 (714)
Q Consensus 584 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-------------~~~l~~L~~L 650 (714)
++.+++|+.|+++.|.++.+.-.- +...+.+| +..+++|+.|++++|.... +..+++|+.|
T Consensus 250 -~~~l~~L~~L~l~~n~L~~L~l~~---n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L 323 (457)
T 3bz5_A 250 -VSTLSKLTTLHCIQTDLLEIDLTH---NTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYL 323 (457)
T ss_dssp -CTTCTTCCEEECTTCCCSCCCCTT---CTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEE
T ss_pred -HHHCCCCCEEeccCCCCCEEECCC---CccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEE
Confidence 345566666666666665443221 11122333 4566777777777775321 4566788888
Q ss_pred ECCCCCCcccchhhccCCCCCeeccccCccccccCCC---------------cCcccEeecccCcccccccCc
Q 042374 651 DLSGNDFESLPASIKQLSRLRKLHLCYCDKLQSIPEL---------------PLSLKWLDASNCERLQTFPEI 708 (714)
Q Consensus 651 ~L~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~---------------~~~L~~L~l~~c~~l~~lp~~ 708 (714)
++++|+++.++ +.++++|+.|++++|++.+ +|.+ +.+|+.++++++..-..||..
T Consensus 324 ~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~-l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 324 YLNNTELTELD--VSHNTKLKSLSCVNAHIQD-FSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp ECTTCCCSCCC--CTTCTTCSEEECCSSCCCB-CTTGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTT
T ss_pred ECCCCcccccc--cccCCcCcEEECCCCCCCC-ccccccccccCCcEEecceeeecCccccccCcEEEEcChh
Confidence 88888888774 7778888888888887543 3321 234566777776555566643
No 40
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=3.6e-24 Score=228.67 Aligned_cols=309 Identities=19% Similarity=0.185 Sum_probs=201.7
Q ss_pred cCceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCCCCCCCCCCCcccccCCCCCCccccCCcccccc
Q 042374 350 SNLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTLPFDFEPENLTELSLPYSKVEQSWGGKRLLSS 429 (714)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L 429 (714)
.+|+.|++++|.+.+. ..++..+++|++.+|.+..+|....+.+|++|++++|+++.++.. ..+|
T Consensus 111 ~~L~~L~l~~n~l~~l-------------~~~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~--~~~L 175 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKAL-------------SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL--PPSL 175 (454)
T ss_dssp TTCCEEECCSSCCSCC-------------CSCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC--CTTC
T ss_pred CCCcEEECCCCccCcc-------------cCCCCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC--cccc
Confidence 5667777766654432 123457888999999888888544788899999999988876543 4689
Q ss_pred cEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEeCCCcC
Q 042374 430 KFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINCGGCVN 509 (714)
Q Consensus 430 ~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 509 (714)
++|++++|.+.. .|.+..+++|++|++++|... .+|... .+|++|++++|.. ..+|....+.+|+.|+++++ .
T Consensus 176 ~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~-~l~~~~---~~L~~L~l~~n~l-~~lp~~~~l~~L~~L~l~~N-~ 248 (454)
T 1jl5_A 176 EFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLK-KLPDLP---LSLESIVAGNNIL-EELPELQNLPFLTTIYADNN-L 248 (454)
T ss_dssp CEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCS-SCCCCC---TTCCEEECCSSCC-SSCCCCTTCTTCCEEECCSS-C
T ss_pred cEEECcCCcCCc-CccccCCCCCCEEECCCCcCC-cCCCCc---CcccEEECcCCcC-CcccccCCCCCCCEEECCCC-c
Confidence 999999998766 567888999999999988643 455432 5889999988754 47776445889999999885 4
Q ss_pred CCcccccccccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhcc-
Q 042374 510 LTEFPQISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKM- 588 (714)
Q Consensus 510 l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l- 588 (714)
++.++....+|++|++++|.+..+|.. +++|++|++++|.+.+ +|.. .++|+.|++++|.+.+ ++ .+
T Consensus 249 l~~l~~~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~----~~~ 316 (454)
T 1jl5_A 249 LKTLPDLPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LC----DLP 316 (454)
T ss_dssp CSSCCSCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-EC----CCC
T ss_pred CCcccccccccCEEECCCCcccccCcc---cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-cc----CCc
Confidence 566777778899999999998888764 3789999999987654 2221 2688999999887653 22 23
Q ss_pred ccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCcCC-CCCCCCEEECCCCCCcc---cchhh
Q 042374 589 EYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYALNG-CLSSLEYLDLSGNDFES---LPASI 664 (714)
Q Consensus 589 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~l~~L~~L~L~~n~l~~---lp~~l 664 (714)
++|++|++++|.++.+|.. +++|+.|++++|.+..+. .+++|++|++++|+++. +|.++
T Consensus 317 ~~L~~L~Ls~N~l~~lp~~-----------------~~~L~~L~L~~N~l~~lp~~l~~L~~L~L~~N~l~~l~~ip~~l 379 (454)
T 1jl5_A 317 PSLEELNVSNNKLIELPAL-----------------PPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESV 379 (454)
T ss_dssp TTCCEEECCSSCCSCCCCC-----------------CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred CcCCEEECCCCcccccccc-----------------CCcCCEEECCCCccccccchhhhccEEECCCCCCCcCCCChHHH
Confidence 4789999999988776542 478999999999987733 47899999999999886 67777
Q ss_pred ccC-------------CCCCeeccccCccccccCCCcCcccEeecccCcccccccCccc
Q 042374 665 KQL-------------SRLRKLHLCYCDKLQSIPELPLSLKWLDASNCERLQTFPEISS 710 (714)
Q Consensus 665 ~~l-------------~~L~~L~l~~~~~~~~lp~~~~~L~~L~l~~c~~l~~lp~~~~ 710 (714)
..+ ++|++|++++|++.+ +|..|.+|+.|.+.+|..-..+|.+..
T Consensus 380 ~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~-~~~iP~sl~~L~~~~~~~~~~~~~~~~ 437 (454)
T 1jl5_A 380 EDLRMNSHLAEVPELPQNLKQLHVETNPLRE-FPDIPESVEDLRMNSERVVDPYEFAHE 437 (454)
T ss_dssp CEEECCC----------------------------------------------------
T ss_pred HhhhhcccccccccccCcCCEEECCCCcCCc-cccchhhHhheeCcCcccCCccccCHH
Confidence 777 899999999998654 466677899999999977666665544
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=3.6e-24 Score=228.83 Aligned_cols=300 Identities=16% Similarity=0.079 Sum_probs=235.5
Q ss_pred CceEEEecCCCCCCCCCCCCCCCcccccCCCCCCccccCCcccccccEEeccCCccccccCCCCCCCCCcEEecCCCCCC
Q 042374 384 ELRYLHWHEYPLKTLPFDFEPENLTELSLPYSKVEQSWGGKRLLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNL 463 (714)
Q Consensus 384 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 463 (714)
.+++|+++++.+..+|....+++|++|++++|.++.++ ...+++|++|++++|.+... .+..+++|++|++++|...
T Consensus 43 ~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~--~~~~l~~L~~L~L~~N~l~ 119 (457)
T 3bz5_A 43 TLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNL--DVTPLTKLTYLNCDTNKLT 119 (457)
T ss_dssp TCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCC--CCTTCTTCCEEECCSSCCS
T ss_pred CCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCcee--ecCCCCcCCEEECCCCcCC
Confidence 78999999999999985558899999999999999985 44599999999999997764 3899999999999998654
Q ss_pred ccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEeCCCcCCCccc-ccccccceEecccccceEeccccCCCCC
Q 042374 464 VSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINCGGCVNLTEFP-QISGSVTKLILWETAIKEVPSSVGCLTN 542 (714)
Q Consensus 464 ~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~L~~L~l~~~~i~~lp~~~~~l~~ 542 (714)
.+| ++.+++|++|++++|.... ++ ...+.+|+.|++++|..+..++ ....+|+.|++++|.++.+| ++.+++
T Consensus 120 -~l~--~~~l~~L~~L~l~~N~l~~-l~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~ 192 (457)
T 3bz5_A 120 -KLD--VSQNPLLTYLNCARNTLTE-ID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKL 192 (457)
T ss_dssp -CCC--CTTCTTCCEEECTTSCCSC-CC-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTT
T ss_pred -eec--CCCCCcCCEEECCCCccce-ec-cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCC
Confidence 455 8999999999999976544 43 3358999999999997776664 34568999999999999987 889999
Q ss_pred CcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCcc
Q 042374 543 LKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSV 622 (714)
Q Consensus 543 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~ 622 (714)
|+.|++++|.+.+. .++.+++|+.|++++|.+.+ +| ++.+++|++|++++|.++.+|... ...+....
T Consensus 193 L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~------l~~L~~L~ 260 (457)
T 3bz5_A 193 LNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVST------LSKLTTLH 260 (457)
T ss_dssp CCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTT------CTTCCEEE
T ss_pred CCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHH------CCCCCEEe
Confidence 99999999987654 48889999999999998776 66 889999999999999998876331 11111111
Q ss_pred CCCCCCCceeccCCCcCc---CCCCCCCCEEECCCCCCc-ccch--------hhccCCCCCeeccccCccccccC-CCcC
Q 042374 623 ADTNDLEGLSLYLRNYAL---NGCLSSLEYLDLSGNDFE-SLPA--------SIKQLSRLRKLHLCYCDKLQSIP-ELPL 689 (714)
Q Consensus 623 ~~~~~L~~L~l~~~~~~~---~~~l~~L~~L~L~~n~l~-~lp~--------~l~~l~~L~~L~l~~~~~~~~lp-~~~~ 689 (714)
....+|+.|++++|.... .+.+++|+.|++++|... .+|. .+.++++|++|++++|.+.+ ++ ..++
T Consensus 261 l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~l~~l~ 339 (457)
T 3bz5_A 261 CIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LDVSHNT 339 (457)
T ss_dssp CTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CCCTTCT
T ss_pred ccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cccccCC
Confidence 122356667777666433 567799999999999633 4443 25667889999999988765 44 2457
Q ss_pred cccEeecccCcccccccC
Q 042374 690 SLKWLDASNCERLQTFPE 707 (714)
Q Consensus 690 ~L~~L~l~~c~~l~~lp~ 707 (714)
+|+.|++++| .++.+|.
T Consensus 340 ~L~~L~l~~N-~l~~l~~ 356 (457)
T 3bz5_A 340 KLKSLSCVNA-HIQDFSS 356 (457)
T ss_dssp TCSEEECCSS-CCCBCTT
T ss_pred cCcEEECCCC-CCCCccc
Confidence 8999999987 4555543
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.4e-24 Score=241.32 Aligned_cols=294 Identities=14% Similarity=0.063 Sum_probs=188.4
Q ss_pred CceEEEecCCCCCCCCCCC--CCCCcccccCCCCCCccccCCcc--cccccEEeccCCccccccCC-CCCCCCCcEEecC
Q 042374 384 ELRYLHWHEYPLKTLPFDF--EPENLTELSLPYSKVEQSWGGKR--LLSSKFIDLSHSQYLIRMPD-LSEAPNLERINLL 458 (714)
Q Consensus 384 ~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~--~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~L~ 458 (714)
+++.+++.++.+..+|..+ .+++|++|++++|.+..+++... +++|++|+|++|.+....+. |+.+++|++|+|+
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 4556666666666666543 45677777777777776665332 77777777777776665553 5777777777777
Q ss_pred CCCCCccCCcc-ccCCCCCCEEecCCCCCCCccCCCCC-CCCCcEEEeCCCcCCCcccccccccceEecccccceEeccc
Q 042374 459 NCTNLVSVPSS-IQNFNHLSMLCFEGCKSLRSFPSNLH-FVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSS 536 (714)
Q Consensus 459 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~ 536 (714)
+|... .+|.. ++++++|++|++++|......|..+. +++|+.|+++++..-..-....++|+.|++++|.+..++
T Consensus 132 ~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~-- 208 (597)
T 3oja_B 132 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA-- 208 (597)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE--
T ss_pred CCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc--
Confidence 76543 44433 56777777777777655544444444 677777777765432222244566777777777666543
Q ss_pred cCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcc
Q 042374 537 VGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTES 616 (714)
Q Consensus 537 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 616 (714)
...+|+.|++++|.+... +..+ .++|+.|++++|.+.+ +..+..+++|+.|++++|.+..++..
T Consensus 209 --~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~--------- 272 (597)
T 3oja_B 209 --IPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH--------- 272 (597)
T ss_dssp --CCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESG---------
T ss_pred --CCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHH---------
Confidence 345677777777765332 2222 2567777777776554 35567777777777777776654322
Q ss_pred cCCCccCCCCCCCceeccCCCcCc----CCCCCCCCEEECCCCCCcccchhhccCCCCCeeccccCccccccCCCcCccc
Q 042374 617 QLPSSVADTNDLEGLSLYLRNYAL----NGCLSSLEYLDLSGNDFESLPASIKQLSRLRKLHLCYCDKLQSIPELPLSLK 692 (714)
Q Consensus 617 ~l~~~~~~~~~L~~L~l~~~~~~~----~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~~~~L~ 692 (714)
.+..+++|+.|+|++|.+.. .+.+++|+.|+|++|.++.+|.++..+++|++|+|++|++...-+..+++|+
T Consensus 273 ----~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~ 348 (597)
T 3oja_B 273 ----PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK 348 (597)
T ss_dssp ----GGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCS
T ss_pred ----HhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhhcCCCC
Confidence 26667777777777777655 3456777777777777777777777777777777777776544334566777
Q ss_pred EeecccCc
Q 042374 693 WLDASNCE 700 (714)
Q Consensus 693 ~L~l~~c~ 700 (714)
.|++++|+
T Consensus 349 ~L~l~~N~ 356 (597)
T 3oja_B 349 NLTLSHND 356 (597)
T ss_dssp EEECCSSC
T ss_pred EEEeeCCC
Confidence 77777765
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=1.8e-25 Score=227.26 Aligned_cols=246 Identities=19% Similarity=0.230 Sum_probs=180.5
Q ss_pred ccccEEeccCCcccc--ccC-CCCCCCCCcEEecCC-CCCCccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEE
Q 042374 427 LSSKFIDLSHSQYLI--RMP-DLSEAPNLERINLLN-CTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTI 502 (714)
Q Consensus 427 ~~L~~L~l~~~~~~~--~~~-~~~~l~~L~~L~L~~-~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 502 (714)
.+++.|++++|.+.. ..| .+..+++|++|++++ |.....+|..++++++|++|++++|.....+|..+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~------- 122 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS------- 122 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG-------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh-------
Confidence 355666666666554 333 466667777777763 555556666677777777777766554444444332
Q ss_pred EeCCCcCCCcccccccccceEecccccce-EeccccCCCCCCcEEecCCCCCCccccccccCCC-CCCEEEecCCCCCCC
Q 042374 503 NCGGCVNLTEFPQISGSVTKLILWETAIK-EVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLK-SLQNLYLIQCFDLEN 580 (714)
Q Consensus 503 ~l~~~~~l~~~~~~~~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~ 580 (714)
...+|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..++.++ +|++|++++|.+.+.
T Consensus 123 -------------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~ 189 (313)
T 1ogq_A 123 -------------QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189 (313)
T ss_dssp -------------GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred -------------CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc
Confidence 1123444444445665 5677778888888888888887777888888887 888888888877767
Q ss_pred CchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc----CCCCCCCCEEECCCCC
Q 042374 581 FPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL----NGCLSSLEYLDLSGND 656 (714)
Q Consensus 581 ~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~----~~~l~~L~~L~L~~n~ 656 (714)
.|..+..++ |++|++++|.++..+.. .+..+++|+.|++++|.+.. +..+++|++|+|++|+
T Consensus 190 ~~~~~~~l~-L~~L~Ls~N~l~~~~~~-------------~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 190 IPPTFANLN-LAFVDLSRNMLEGDASV-------------LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR 255 (313)
T ss_dssp CCGGGGGCC-CSEEECCSSEEEECCGG-------------GCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSC
T ss_pred CChHHhCCc-ccEEECcCCcccCcCCH-------------HHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCc
Confidence 777888876 88888888887654333 27788888888888887764 5678999999999999
Q ss_pred Cc-ccchhhccCCCCCeeccccCccccccCCC--cCcccEeecccCccccccc
Q 042374 657 FE-SLPASIKQLSRLRKLHLCYCDKLQSIPEL--PLSLKWLDASNCERLQTFP 706 (714)
Q Consensus 657 l~-~lp~~l~~l~~L~~L~l~~~~~~~~lp~~--~~~L~~L~l~~c~~l~~lp 706 (714)
++ .+|.++..+++|++|++++|++.+.+|.. +++|+.|++++|+.+...|
T Consensus 256 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred ccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCC
Confidence 98 78999999999999999999999889864 6789999999998776554
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=1.3e-23 Score=216.07 Aligned_cols=274 Identities=16% Similarity=0.139 Sum_probs=147.0
Q ss_pred CceEEEecCCCCCCCCCCCCCCCcccccCCCCCCccccCCc--ccccccEEeccCCccccccC-CCCCCCCCcEEecCCC
Q 042374 384 ELRYLHWHEYPLKTLPFDFEPENLTELSLPYSKVEQSWGGK--RLLSSKFIDLSHSQYLIRMP-DLSEAPNLERINLLNC 460 (714)
Q Consensus 384 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~--~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~ 460 (714)
.++.+++.++.+..+|..+ .++++.|++++|.+..+.... .+++|++|++++|.+....+ .|..+++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 3556666666666666554 356777777777776665432 26777777777776665544 4666777777777766
Q ss_pred CCCccCCccccCCCCCCEEecCCCCCCCccCC-CCC-CCCCcEEEeCCCcCCC--ccccccc--ccceEecccccceEec
Q 042374 461 TNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPS-NLH-FVCPVTINCGGCVNLT--EFPQISG--SVTKLILWETAIKEVP 534 (714)
Q Consensus 461 ~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~~-~~~L~~L~l~~~~~l~--~~~~~~~--~L~~L~l~~~~i~~lp 534 (714)
.. ..+|..+. ++|++|++++|... .+|. .+. +.+|+.|+++++..-. ..+.... +|++|++++|.++.+|
T Consensus 113 ~l-~~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 113 HL-VEIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIP 188 (332)
T ss_dssp CC-CSCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCC
T ss_pred cC-CccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccC
Confidence 43 35555444 66777777665433 3333 222 5666666665543210 1111110 5556666666666655
Q ss_pred cccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCC
Q 042374 535 SSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGT 614 (714)
Q Consensus 535 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~ 614 (714)
..+. ++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.++.+|..
T Consensus 189 ~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~------- 259 (332)
T 2ft3_A 189 KDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG------- 259 (332)
T ss_dssp SSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT-------
T ss_pred cccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh-------
Confidence 5443 4566666666655554445556666666666666655544444556666666666666665544433
Q ss_pred cccCCCccCCCCCCCceeccCCCcCcCC-----C------CCCCCEEECCCCCCc--c-cchhhccCCCCCeeccccC
Q 042374 615 ESQLPSSVADTNDLEGLSLYLRNYALNG-----C------LSSLEYLDLSGNDFE--S-LPASIKQLSRLRKLHLCYC 678 (714)
Q Consensus 615 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~-----~------l~~L~~L~L~~n~l~--~-lp~~l~~l~~L~~L~l~~~ 678 (714)
+..+++|+.|++++|.+..++ . .+.|+.|++++|.+. . .|..+..+++|+.|++++|
T Consensus 260 -------l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 260 -------LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp -------GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred -------hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 444455555555555444311 0 234445555555443 1 2233444445555554444
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=2.8e-23 Score=213.40 Aligned_cols=215 Identities=19% Similarity=0.143 Sum_probs=100.2
Q ss_pred ceEEEecCCCCCCCCCCCCCCCcccccCCCCCCccccCCcc--cccccEEeccCCccccccC-CCCCCCCCcEEecCCCC
Q 042374 385 LRYLHWHEYPLKTLPFDFEPENLTELSLPYSKVEQSWGGKR--LLSSKFIDLSHSQYLIRMP-DLSEAPNLERINLLNCT 461 (714)
Q Consensus 385 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~--~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~ 461 (714)
++.+++.++.+..+|..+. .+++.|++++|+++.++.... +++|++|++++|.+....| .|..+++|++|++++|.
T Consensus 33 l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111 (330)
T ss_dssp TTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred CeEEEecCCCccccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence 4455555555555554332 455555555555555544222 5555555555555554433 35555555555555553
Q ss_pred CCccCCccccCCCCCCEEecCCCCCCCccCCCC-CCCCCcEEEeCCCcCCC--cc---cccccccceEecccccceEecc
Q 042374 462 NLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNL-HFVCPVTINCGGCVNLT--EF---PQISGSVTKLILWETAIKEVPS 535 (714)
Q Consensus 462 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~--~~---~~~~~~L~~L~l~~~~i~~lp~ 535 (714)
+..+|..+. ++|++|++++|......+..+ .+.+|+.|+++++..-. .. ....++|++|++++|.+..+|.
T Consensus 112 -l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~ 188 (330)
T 1xku_A 112 -LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 188 (330)
T ss_dssp -CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS
T ss_pred -CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc
Confidence 234443332 455555555543322211111 14444444444432110 00 0112344444555555554444
Q ss_pred ccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccC
Q 042374 536 SVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELP 605 (714)
Q Consensus 536 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 605 (714)
.+. ++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+..+|
T Consensus 189 ~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp 256 (330)
T 1xku_A 189 GLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 256 (330)
T ss_dssp SCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC
T ss_pred ccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCC
Confidence 332 45555555555444444444555555555555555444333334455555555555555544433
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=4.8e-23 Score=211.77 Aligned_cols=256 Identities=18% Similarity=0.149 Sum_probs=178.5
Q ss_pred CcccccCCCCCCccccCCcccccccEEeccCCccccccC-CCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCC
Q 042374 406 NLTELSLPYSKVEQSWGGKRLLSSKFIDLSHSQYLIRMP-DLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGC 484 (714)
Q Consensus 406 ~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~ 484 (714)
+++.++++++.++.++... .++|++|++++|.+....+ .|..+++|++|++++|......|..++.+++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 6889999999998877543 5899999999999877766 5899999999999998766666788999999999999986
Q ss_pred CCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEeccc-cCCCCCCcEEecCCCCCCc--cccccc
Q 042374 485 KSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSS-VGCLTNLKVLSLSQCPRLK--RISTSI 561 (714)
Q Consensus 485 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~--~~~~~~ 561 (714)
. ++.+|..+. . +|++|++++|.+..+|.. +..+++|++|++++|.+.. ..+..+
T Consensus 113 ~-l~~l~~~~~-~---------------------~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 169 (332)
T 2ft3_A 113 H-LVEIPPNLP-S---------------------SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169 (332)
T ss_dssp C-CCSCCSSCC-T---------------------TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSS
T ss_pred c-CCccCcccc-c---------------------cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccc
Confidence 4 345555432 3 455566666666666654 6677777777777776532 445555
Q ss_pred cCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc-
Q 042374 562 LKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL- 640 (714)
Q Consensus 562 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~- 640 (714)
..+ +|++|++++|.+.. +|..+. ++|++|++++|.++.++... +..+++|+.|++++|.+..
T Consensus 170 ~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~-------------l~~l~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 170 DGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELED-------------LLRYSKLYRLGLGHNQIRMI 232 (332)
T ss_dssp CSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTS-------------STTCTTCSCCBCCSSCCCCC
T ss_pred cCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHH-------------hcCCCCCCEEECCCCcCCcC
Confidence 555 77777777766443 444333 56777777777776554322 6667777777777776655
Q ss_pred ----CCCCCCCCEEECCCCCCcccchhhccCCCCCeeccccCccccccCCC---------cCcccEeecccCccc
Q 042374 641 ----NGCLSSLEYLDLSGNDFESLPASIKQLSRLRKLHLCYCDKLQSIPEL---------PLSLKWLDASNCERL 702 (714)
Q Consensus 641 ----~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~---------~~~L~~L~l~~c~~l 702 (714)
++.+++|+.|++++|+++.+|.++..+++|++|++++|++...-+.. .++|+.|++++|+..
T Consensus 233 ~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 233 ENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred ChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 34567777777777777777777777777777777777654322111 345677777777643
No 47
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=6.1e-23 Score=225.63 Aligned_cols=241 Identities=18% Similarity=0.199 Sum_probs=161.0
Q ss_pred CCcccccCCCCCCccccCCcccccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCC
Q 042374 405 ENLTELSLPYSKVEQSWGGKRLLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGC 484 (714)
Q Consensus 405 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~ 484 (714)
++|++|++++|+++.++. .+++|++|++++|.+.. +|. .+++|++|++++|. +..+|. .+++|++|++++|
T Consensus 61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N 131 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS-LPV--LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGN 131 (622)
T ss_dssp TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSC-CCC--CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSS
T ss_pred CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCc-CCC--CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCC
Confidence 344444444444444433 34455555555554432 222 44555555555543 223333 3455555555554
Q ss_pred CCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCC
Q 042374 485 KSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKL 564 (714)
Q Consensus 485 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 564 (714)
. ++.+|.. +++|++|++++| .+..++..+++|+.|++++|.++.+| ..+++|+.|++++|.+.+ +|.. +
T Consensus 132 ~-l~~lp~~--l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~-l~~~---~ 200 (622)
T 3g06_A 132 Q-LTSLPVL--PPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLAS-LPTL---P 200 (622)
T ss_dssp C-CSCCCCC--CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCCC---C
T ss_pred C-CCcCCCC--CCCCCEEECcCC-cCCCcCCccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCC-CCCc---c
Confidence 3 3334432 255555555554 44555566677888888888888888 456889999999987643 4433 4
Q ss_pred CCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCcCC-C
Q 042374 565 KSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYALNG-C 643 (714)
Q Consensus 565 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~ 643 (714)
++|+.|++.+|.+. .+|.. +++|++|++++|.++.+|. .+++|+.|++++|.+..+. .
T Consensus 201 ~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~lp~-----------------~l~~L~~L~Ls~N~L~~lp~~ 259 (622)
T 3g06_A 201 SELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPV-----------------LPSELKELMVSGNRLTSLPML 259 (622)
T ss_dssp TTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCCC-----------------CCTTCCEEECCSSCCSCCCCC
T ss_pred chhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCcCCC-----------------CCCcCcEEECCCCCCCcCCcc
Confidence 78899999888755 45543 4779999999998877652 3478999999999887733 5
Q ss_pred CCCCCEEECCCCCCcccchhhccCCCCCeeccccCccccccCC
Q 042374 644 LSSLEYLDLSGNDFESLPASIKQLSRLRKLHLCYCDKLQSIPE 686 (714)
Q Consensus 644 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~ 686 (714)
+++|+.|+|++|+++.+|..+.++++|+.|+|++|++.+..|.
T Consensus 260 ~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 260 PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred cccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 6799999999999999999999999999999999998876665
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=2.2e-24 Score=219.25 Aligned_cols=244 Identities=15% Similarity=0.158 Sum_probs=173.5
Q ss_pred CcccccCCCCCCcc---ccCCc-ccccccEEeccC-CccccccC-CCCCCCCCcEEecCCCCCCccCCccccCCCCCCEE
Q 042374 406 NLTELSLPYSKVEQ---SWGGK-RLLSSKFIDLSH-SQYLIRMP-DLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSML 479 (714)
Q Consensus 406 ~L~~L~l~~~~i~~---~~~~~-~~~~L~~L~l~~-~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L 479 (714)
+++.|++++|.+.. ++... .+++|++|++++ |.+....| .+..+++|++|++++|.....+|..+.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 34555555555543 22211 267777777774 66665555 47777778888887776655677777777888888
Q ss_pred ecCCCCCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccce-EeccccCCCC-CCcEEecCCCCCCccc
Q 042374 480 CFEGCKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIK-EVPSSVGCLT-NLKVLSLSQCPRLKRI 557 (714)
Q Consensus 480 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~-~lp~~~~~l~-~L~~L~l~~~~~~~~~ 557 (714)
++++|.....+|..+. ..++|++|++++|.+. .+|..++.++ +|++|++++|.+.+.+
T Consensus 131 ~Ls~N~l~~~~p~~~~--------------------~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~ 190 (313)
T 1ogq_A 131 DFSYNALSGTLPPSIS--------------------SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190 (313)
T ss_dssp ECCSSEEESCCCGGGG--------------------GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC
T ss_pred eCCCCccCCcCChHHh--------------------cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC
Confidence 8877665445554332 1223444555556666 6677777777 8888888888877777
Q ss_pred cccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCC
Q 042374 558 STSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRN 637 (714)
Q Consensus 558 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 637 (714)
|..+..+. |+.|++++|.+.+..|..+..+++|++|++++|.+...+.. +..+++|+.|++++|.
T Consensus 191 ~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------------~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 191 PPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--------------VGLSKNLNGLDLRNNR 255 (313)
T ss_dssp CGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG--------------CCCCTTCCEEECCSSC
T ss_pred ChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc--------------ccccCCCCEEECcCCc
Confidence 87787776 88888888877766777788888888888888877643322 5667888888888888
Q ss_pred cCc-----CCCCCCCCEEECCCCCCc-ccchhhccCCCCCeeccccCccccccC
Q 042374 638 YAL-----NGCLSSLEYLDLSGNDFE-SLPASIKQLSRLRKLHLCYCDKLQSIP 685 (714)
Q Consensus 638 ~~~-----~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~l~~~~~~~~lp 685 (714)
+.. ++.+++|+.|+|++|+++ .+|.. ..+++|+.|++++|+.+...|
T Consensus 256 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred ccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 763 567899999999999998 67765 889999999999999665544
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=5.9e-22 Score=203.49 Aligned_cols=287 Identities=18% Similarity=0.142 Sum_probs=215.5
Q ss_pred CceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCCCCCC-C-CCCCcccccCCCCCCccccCCcc--c
Q 042374 351 NLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTLPFD-F-EPENLTELSLPYSKVEQSWGGKR--L 426 (714)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~i~~~~~~~~--~ 426 (714)
+++.++++++.+..+ ...++..++.|+++++.+..++.. + .+.+|++|++++|.+..+.+... +
T Consensus 32 ~l~~l~~~~~~l~~l------------p~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (330)
T 1xku_A 32 HLRVVQCSDLGLEKV------------PKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL 99 (330)
T ss_dssp ETTEEECTTSCCCSC------------CCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred CCeEEEecCCCcccc------------CccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCC
Confidence 566666665543322 123445788999999999888763 3 78899999999999988854433 8
Q ss_pred ccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCC--ccCCCCC-CCCCcEEE
Q 042374 427 LSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLR--SFPSNLH-FVCPVTIN 503 (714)
Q Consensus 427 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~--~~~~~~~-~~~L~~L~ 503 (714)
++|++|++++|.+......+. ++|++|++++|......+..+..+++|++|++++|.... ..+..+. +.+|+.|+
T Consensus 100 ~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 100 VKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177 (330)
T ss_dssp TTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred CCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEE
Confidence 999999999998764433333 789999999987655555668899999999999876542 3444444 88999999
Q ss_pred eCCCcCCCccc-ccccccceEecccccceEe-ccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCC
Q 042374 504 CGGCVNLTEFP-QISGSVTKLILWETAIKEV-PSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENF 581 (714)
Q Consensus 504 l~~~~~l~~~~-~~~~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 581 (714)
++++. ++.++ ....+|++|++++|.+..+ |..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+
T Consensus 178 l~~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 255 (330)
T 1xku_A 178 IADTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255 (330)
T ss_dssp CCSSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SC
T ss_pred CCCCc-cccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cC
Confidence 98864 44454 3347899999999999988 466999999999999999987777778999999999999999766 68
Q ss_pred chhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCcCCCCCCCCEEECCCCCCcc--
Q 042374 582 PEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYALNGCLSSLEYLDLSGNDFES-- 659 (714)
Q Consensus 582 ~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~L~~L~L~~n~l~~-- 659 (714)
|..+..+++|++|++++|.++.+|... +.... .....+.|+.|++++|.+..
T Consensus 256 p~~l~~l~~L~~L~l~~N~i~~~~~~~-------------f~~~~-------------~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNISAIGSND-------------FCPPG-------------YNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCCCCCCTTS-------------SSCSS-------------CCTTSCCCSEEECCSSSSCGGG
T ss_pred ChhhccCCCcCEEECCCCcCCccChhh-------------cCCcc-------------cccccccccceEeecCcccccc
Confidence 888999999999999999999887653 11110 00124667788888887762
Q ss_pred -cchhhccCCCCCeeccccCc
Q 042374 660 -LPASIKQLSRLRKLHLCYCD 679 (714)
Q Consensus 660 -lp~~l~~l~~L~~L~l~~~~ 679 (714)
.|..+..+.+|+.+++++|+
T Consensus 310 i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 310 IQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCGGGGTTCCCGGGEEC----
T ss_pred cCccccccccceeEEEecccC
Confidence 35577888899999998874
No 50
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=5.4e-22 Score=223.66 Aligned_cols=349 Identities=19% Similarity=0.181 Sum_probs=210.4
Q ss_pred ccCCCceeeeCHHHHhcccCceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCCCCCC-C-CCCCccc
Q 042374 332 NLSKINDLHLSPQAFAKMSNLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTLPFD-F-EPENLTE 409 (714)
Q Consensus 332 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~ 409 (714)
+++......+.+..|..+++|+.|++++|.+.+++ ++.+..++ ++++|++++|.+..+|.. + .+.+|++
T Consensus 58 dLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~--------~~~f~~L~-~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 58 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE--------DGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC--------TTTTTTCT-TCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred EeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC--------hhHhcCCC-CCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 44444444566778888888888888888765422 12233444 788888888888887754 3 6788888
Q ss_pred ccCCCCCCccccCCcc--cccccEEeccCCccccc-cC-CCCCCCCCcEEecCCCCCCccCCccccCCCCCC----EEec
Q 042374 410 LSLPYSKVEQSWGGKR--LLSSKFIDLSHSQYLIR-MP-DLSEAPNLERINLLNCTNLVSVPSSIQNFNHLS----MLCF 481 (714)
Q Consensus 410 L~l~~~~i~~~~~~~~--~~~L~~L~l~~~~~~~~-~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~----~L~l 481 (714)
|++++|+++.++.... +++|++|++++|.+... .| .+..+++|++|++++|......+..+..+.+++ .+++
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence 8888888888776543 88888888888877543 33 467788888888888764433333332221111 1111
Q ss_pred CCCCCCC-----------------------------------------------------c-------------------
Q 042374 482 EGCKSLR-----------------------------------------------------S------------------- 489 (714)
Q Consensus 482 ~~~~~~~-----------------------------------------------------~------------------- 489 (714)
+.|.... .
T Consensus 209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 1110000 0
Q ss_pred --------------------------------cCCCCCCCCCcEEEeCCCc----------CCC----------ccc--c
Q 042374 490 --------------------------------FPSNLHFVCPVTINCGGCV----------NLT----------EFP--Q 515 (714)
Q Consensus 490 --------------------------------~~~~~~~~~L~~L~l~~~~----------~l~----------~~~--~ 515 (714)
++.......++.|++.++. .+. ..+ .
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 368 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 368 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred hhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc
Confidence 0000011234444443331 000 000 1
Q ss_pred cccccceEecccccce--------------------------EeccccCCCCCCcEEecCCCCCCcccc-ccccCCCCCC
Q 042374 516 ISGSVTKLILWETAIK--------------------------EVPSSVGCLTNLKVLSLSQCPRLKRIS-TSILKLKSLQ 568 (714)
Q Consensus 516 ~~~~L~~L~l~~~~i~--------------------------~lp~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~ 568 (714)
..++++.|++++|.+. .++..+..+++|+.+++..+......+ ..+..+++++
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence 2345666666665554 333334444444444444443322222 2344455555
Q ss_pred EEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc-----CCC
Q 042374 569 NLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL-----NGC 643 (714)
Q Consensus 569 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-----~~~ 643 (714)
.++++.|.+....+..+..+++|+.|++++|.+.. ...|..+..+++|+.|+|++|.+.. ++.
T Consensus 449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~------------~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~ 516 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE------------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 516 (635)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG------------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred cccccccccccccccccccchhhhhhhhhhccccc------------ccCchhhhhccccCEEECCCCccCCcChHHHcC
Confidence 55555555444444555555555666655554321 1234458889999999999998876 678
Q ss_pred CCCCCEEECCCCCCcccch-hhccCCCCCeeccccCccccccCC----CcCcccEeecccCcc
Q 042374 644 LSSLEYLDLSGNDFESLPA-SIKQLSRLRKLHLCYCDKLQSIPE----LPLSLKWLDASNCER 701 (714)
Q Consensus 644 l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~~~~~~~lp~----~~~~L~~L~l~~c~~ 701 (714)
+++|++|+|++|+++.++. .+.++++|++|+|++|++.+..|. ++++|+.|++++||-
T Consensus 517 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 517 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp CTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred CCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 8999999999999998854 678899999999999998777665 346899999998763
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=2.5e-23 Score=212.62 Aligned_cols=222 Identities=21% Similarity=0.196 Sum_probs=123.6
Q ss_pred CCcccccCCCCCCccccCCcc-cccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCC
Q 042374 405 ENLTELSLPYSKVEQSWGGKR-LLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEG 483 (714)
Q Consensus 405 ~~L~~L~l~~~~i~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~ 483 (714)
.+++.|++++|.+..++.... +++|++|++++|.+......+..+++|++|++++|... .+|..++++++|++|++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence 456666666666665555433 66666666666665522224566666666666665433 5566666666666666666
Q ss_pred CCCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccC
Q 042374 484 CKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILK 563 (714)
Q Consensus 484 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 563 (714)
|...+.+|..+. . ..++..+..+++|++|++++|.+. .+|..++.
T Consensus 160 n~~~~~~p~~~~-----------------------~-----------~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~ 204 (328)
T 4fcg_A 160 CPELTELPEPLA-----------------------S-----------TDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN 204 (328)
T ss_dssp ETTCCCCCSCSE-----------------------E-----------EC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG
T ss_pred CCCccccChhHh-----------------------h-----------ccchhhhccCCCCCEEECcCCCcC-cchHhhcC
Confidence 555444443220 0 012334556777777777777654 66777777
Q ss_pred CCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc---
Q 042374 564 LKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL--- 640 (714)
Q Consensus 564 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~--- 640 (714)
+++|++|++++|.+.+ +|..++.+++|++|++++|.+.. .+|..+..+++|+.|++++|.+..
T Consensus 205 l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~-------------~~p~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 205 LQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALR-------------NYPPIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp CTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCC-------------BCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred CCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchh-------------hhHHHhcCCCCCCEEECCCCCchhhcc
Confidence 7777777777776553 55667777777777777765432 122224555555555555544322
Q ss_pred --CCCCCCCCEEECCCCCCc-ccchhhccCCCCCeeccc
Q 042374 641 --NGCLSSLEYLDLSGNDFE-SLPASIKQLSRLRKLHLC 676 (714)
Q Consensus 641 --~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~l~ 676 (714)
++.+++|+.|+|++|++. .+|.++.++++|+.+++.
T Consensus 271 ~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 233444444444444322 444444444444444444
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=1.6e-21 Score=219.91 Aligned_cols=352 Identities=18% Similarity=0.132 Sum_probs=225.9
Q ss_pred cCceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCCCCCC-C-CCCCcccccCCCCCCccccCCcc--
Q 042374 350 SNLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTLPFD-F-EPENLTELSLPYSKVEQSWGGKR-- 425 (714)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~i~~~~~~~~-- 425 (714)
.+++.|++++|.+.+++ ...+..++ ++++|++++|.+..++.. + .+.+|++|++++|+++.++...+
T Consensus 52 ~~~~~LdLs~N~i~~l~--------~~~f~~l~-~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLG--------SYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp TTCCEEECTTSCCCEEC--------TTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred cCCCEEEeeCCCCCCCC--------HHHHhCCC-CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 47889999999866432 23344454 799999999999988764 4 68999999999999999987654
Q ss_pred cccccEEeccCCccccccC-CCCCCCCCcEEecCCCCCCc-cCCccccCCCCCCEEecCCCCCCCccCCCCC-C------
Q 042374 426 LLSSKFIDLSHSQYLIRMP-DLSEAPNLERINLLNCTNLV-SVPSSIQNFNHLSMLCFEGCKSLRSFPSNLH-F------ 496 (714)
Q Consensus 426 ~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~------ 496 (714)
+++|++|++++|.+....+ .|+++++|++|++++|.... ..|..++.+++|++|++++|......+..+. +
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 202 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhh
Confidence 9999999999999877666 48999999999999987544 4678889999999999999765433222110 0
Q ss_pred ---------------------CCCcEEEeCCCc------------------------------CCCcc------------
Q 042374 497 ---------------------VCPVTINCGGCV------------------------------NLTEF------------ 513 (714)
Q Consensus 497 ---------------------~~L~~L~l~~~~------------------------------~l~~~------------ 513 (714)
..+..+.+.+.. .+...
T Consensus 203 ~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~ 282 (635)
T 4g8a_A 203 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 282 (635)
T ss_dssp CCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSE
T ss_pred hhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchh
Confidence 011122221100 00000
Q ss_pred ---------------------------------------c--ccccccceEecccccceEecc-----------------
Q 042374 514 ---------------------------------------P--QISGSVTKLILWETAIKEVPS----------------- 535 (714)
Q Consensus 514 ---------------------------------------~--~~~~~L~~L~l~~~~i~~lp~----------------- 535 (714)
. .....++.|++.++.+..++.
T Consensus 283 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~ 362 (635)
T 4g8a_A 283 IEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 362 (635)
T ss_dssp EEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSC
T ss_pred hhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCC
Confidence 0 001134455555544433221
Q ss_pred ---ccCCCCCCcEEecCCCCCCc--cccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCc-ccc
Q 042374 536 ---SVGCLTNLKVLSLSQCPRLK--RISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPS-TFE 609 (714)
Q Consensus 536 ---~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~ 609 (714)
....+++|+.|+++.|.+.. ..+..+..+.+|+.|++..+.... .+..+..+++|+.+++..+....... ...
T Consensus 363 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 441 (635)
T 4g8a_A 363 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 441 (635)
T ss_dssp CBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTT
T ss_pred CCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccc
Confidence 12346677777777766532 223334445555555554443221 22334445555555555443322211 110
Q ss_pred C-----------CCCCcccCCCccCCCCCCCceeccCCCcCc------CCCCCCCCEEECCCCCCccc-chhhccCCCCC
Q 042374 610 K-----------GEGTESQLPSSVADTNDLEGLSLYLRNYAL------NGCLSSLEYLDLSGNDFESL-PASIKQLSRLR 671 (714)
Q Consensus 610 ~-----------~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~------~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~ 671 (714)
. .+......+..+..+++|+.|++++|.... +..+++|+.|+|++|+++.+ |..+.++++|+
T Consensus 442 ~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~ 521 (635)
T 4g8a_A 442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521 (635)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCC
Confidence 0 011112233447888999999999997432 77899999999999999977 56789999999
Q ss_pred eeccccCccccccCC---CcCcccEeecccCcccccccCcccc
Q 042374 672 KLHLCYCDKLQSIPE---LPLSLKWLDASNCERLQTFPEISSY 711 (714)
Q Consensus 672 ~L~l~~~~~~~~lp~---~~~~L~~L~l~~c~~l~~lp~~~~~ 711 (714)
+|+|++|.+.+-.|. .+++|+.|++++|..-...|+.+.+
T Consensus 522 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 564 (635)
T 4g8a_A 522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 564 (635)
T ss_dssp EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTC
T ss_pred EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHh
Confidence 999999986654443 3579999999999654444555543
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=9.8e-23 Score=208.27 Aligned_cols=214 Identities=21% Similarity=0.270 Sum_probs=168.8
Q ss_pred cccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEeC
Q 042374 426 LLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINCG 505 (714)
Q Consensus 426 ~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 505 (714)
..+++.|++++|.+....+.+..+++|++|++++|... .+|..++.+++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~---------------------- 136 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLAR---------------------- 136 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEES----------------------
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCC----------------------
Confidence 35566666666665543334555666666666665433 5566666666666666655
Q ss_pred CCcCCCcccccccccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccC---------CCCCCEEEecCCC
Q 042374 506 GCVNLTEFPQISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILK---------LKSLQNLYLIQCF 576 (714)
Q Consensus 506 ~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---------l~~L~~L~l~~~~ 576 (714)
|.+..+|..++.+++|++|++++|...+.+|..++. +++|++|++++|.
T Consensus 137 ----------------------n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~ 194 (328)
T 4fcg_A 137 ----------------------NPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG 194 (328)
T ss_dssp ----------------------CCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC
T ss_pred ----------------------CccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC
Confidence 444566788899999999999999999999887764 9999999999998
Q ss_pred CCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc-----CCCCCCCCEEE
Q 042374 577 DLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL-----NGCLSSLEYLD 651 (714)
Q Consensus 577 ~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-----~~~l~~L~~L~ 651 (714)
+. .+|..++++++|++|++++|.+..+|.. +..+++|+.|++++|.+.. ++.+++|++|+
T Consensus 195 l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~--------------l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 195 IR-SLPASIANLQNLKSLKIRNSPLSALGPA--------------IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp CC-CCCGGGGGCTTCCEEEEESSCCCCCCGG--------------GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred cC-cchHhhcCCCCCCEEEccCCCCCcCchh--------------hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 76 7888999999999999999999877654 7889999999999988755 67789999999
Q ss_pred CCCCCCc-ccchhhccCCCCCeeccccCccccccCCCc---CcccEeecccC
Q 042374 652 LSGNDFE-SLPASIKQLSRLRKLHLCYCDKLQSIPELP---LSLKWLDASNC 699 (714)
Q Consensus 652 L~~n~l~-~lp~~l~~l~~L~~L~l~~~~~~~~lp~~~---~~L~~L~l~~c 699 (714)
|++|++. .+|.++.++++|++|+|++|++.+.+|..+ ++|+.+++..+
T Consensus 260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 9998655 889899999999999999999999999754 56777776654
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=2.4e-22 Score=208.49 Aligned_cols=264 Identities=16% Similarity=0.162 Sum_probs=201.2
Q ss_pred EEEecCCCCCCCCCCCCCCCcccccCCCCCCccccCCc--ccccccEEeccCCccccccC-CCCCCCCCcEEecCCCCCC
Q 042374 387 YLHWHEYPLKTLPFDFEPENLTELSLPYSKVEQSWGGK--RLLSSKFIDLSHSQYLIRMP-DLSEAPNLERINLLNCTNL 463 (714)
Q Consensus 387 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~--~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~ 463 (714)
..+.+++.+..+|..+. ++|++|++++|.++.++... .+++|++|++++|.+....+ .|.++++|++|++++|...
T Consensus 35 ~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred EeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 36677788888887654 58999999999999887633 38999999999998877766 4889999999999998654
Q ss_pred ccCCcc-ccCCCCCCEEecCCCCCCCccCC--CCC-CCCCcEEEeCCCcCCCcccccccccceEecccc-cceEec-ccc
Q 042374 464 VSVPSS-IQNFNHLSMLCFEGCKSLRSFPS--NLH-FVCPVTINCGGCVNLTEFPQISGSVTKLILWET-AIKEVP-SSV 537 (714)
Q Consensus 464 ~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~--~~~-~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~-~i~~lp-~~~ 537 (714)
.+|.. ++.+++|++|++++|.. +.+|. .+. +++ |++|++++| .+..++ ..+
T Consensus 114 -~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~---------------------L~~L~l~~n~~~~~~~~~~~ 170 (353)
T 2z80_A 114 -NLSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTK---------------------LQILRVGNMDTFTKIQRKDF 170 (353)
T ss_dssp -SCCHHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTT---------------------CCEEEEEESSSCCEECTTTT
T ss_pred -cCCHhHhCCCccCCEEECCCCCC-cccCchhhhccCCC---------------------CcEEECCCCccccccCHHHc
Confidence 45544 88999999999998754 34544 222 444 445555555 355664 458
Q ss_pred CCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCch-hhhccccccccccCCccccccCccccCCCCCcc
Q 042374 538 GCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPE-ILEKMEYLNYNALGRTKIRELPSTFEKGEGTES 616 (714)
Q Consensus 538 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 616 (714)
..+++|++|++++|.+.+..|..+..+++|++|++++|.+. .+|. .+..+++|++|++++|.++.++...
T Consensus 171 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-------- 241 (353)
T 2z80_A 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSE-------- 241 (353)
T ss_dssp TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC---------
T ss_pred cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccc--------
Confidence 88999999999999888877888999999999999998864 3444 4556899999999999988765431
Q ss_pred cCCCccCCCCCCCceeccCCCcCc---------CCCCCCCCEEECCCCCCcccchhh-ccCCCCCeeccccCccccccC
Q 042374 617 QLPSSVADTNDLEGLSLYLRNYAL---------NGCLSSLEYLDLSGNDFESLPASI-KQLSRLRKLHLCYCDKLQSIP 685 (714)
Q Consensus 617 ~l~~~~~~~~~L~~L~l~~~~~~~---------~~~l~~L~~L~L~~n~l~~lp~~l-~~l~~L~~L~l~~~~~~~~lp 685 (714)
++ .......++.+++..+.+.. ++.+++|+.|+|++|+++.+|..+ .++++|++|++++|++....|
T Consensus 242 -l~-~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 242 -LS-TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp -------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred -cc-cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 11 12345667778888877655 567889999999999999998875 889999999999999877665
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=1.7e-21 Score=214.06 Aligned_cols=260 Identities=17% Similarity=0.103 Sum_probs=210.7
Q ss_pred CcccccCCCCCCccccCCcccccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCC
Q 042374 406 NLTELSLPYSKVEQSWGGKRLLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCK 485 (714)
Q Consensus 406 ~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 485 (714)
+++.|++++|.++.++... .++|++|++++|.+.. +|. .+++|++|+|++|. +..+|. .+++|++|++++|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l-~~~L~~L~L~~N~l~~-lp~--~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTS-LPA--LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCC-CTTCSEEEECSCCCSC-CCC--CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcCccChhh-CCCCcEEEecCCCCCC-CCC--cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcCCc
Confidence 4677777778777766544 3899999999998764 444 67899999999986 456776 78999999999864
Q ss_pred CCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCC
Q 042374 486 SLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLK 565 (714)
Q Consensus 486 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 565 (714)
++.+|. .+.+|+.|+++++ .++.+|...++|++|++++|.++.+|.. +.+|+.|++++|.+.. +| ..++
T Consensus 113 -l~~l~~--~l~~L~~L~L~~N-~l~~lp~~l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~-l~---~~~~ 181 (622)
T 3g06_A 113 -LTHLPA--LPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTS-LP---MLPS 181 (622)
T ss_dssp -CCCCCC--CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CC---CCCT
T ss_pred -CCCCCC--CCCCcCEEECCCC-CCCcCCCCCCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCCCC-Cc---ccCC
Confidence 556666 6789999999986 4777888889999999999999988864 5689999999987654 55 4578
Q ss_pred CCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCcC-CCC
Q 042374 566 SLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYALN-GCL 644 (714)
Q Consensus 566 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~~l 644 (714)
+|+.|++++|.+.. +|.. +++|+.|++++|.++.+|.. +++|+.|++++|.+..+ ..+
T Consensus 182 ~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~l~~~-----------------~~~L~~L~Ls~N~L~~lp~~l 240 (622)
T 3g06_A 182 GLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPAL-----------------PSGLKELIVSGNRLTSLPVLP 240 (622)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCCCC-----------------CTTCCEEECCSSCCSCCCCCC
T ss_pred CCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccccCCC-----------------CCCCCEEEccCCccCcCCCCC
Confidence 99999999998654 5543 47899999999999877642 37899999999998874 457
Q ss_pred CCCCEEECCCCCCcccchhhccCCCCCeeccccCccccccCC---CcCcccEeecccCcccccccCcc
Q 042374 645 SSLEYLDLSGNDFESLPASIKQLSRLRKLHLCYCDKLQSIPE---LPLSLKWLDASNCERLQTFPEIS 709 (714)
Q Consensus 645 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~---~~~~L~~L~l~~c~~l~~lp~~~ 709 (714)
++|+.|+|++|+++.+|. .+++|+.|++++|.+. .+|. .+++|+.|++++|+.-..+|..+
T Consensus 241 ~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 241 SELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred CcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence 899999999999999997 6789999999999866 7775 35789999999998665555443
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=1.1e-22 Score=210.91 Aligned_cols=265 Identities=17% Similarity=0.091 Sum_probs=211.6
Q ss_pred CcccccCCCCCCccccCCcccccccEEeccCCccccccC-CCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCC
Q 042374 406 NLTELSLPYSKVEQSWGGKRLLSSKFIDLSHSQYLIRMP-DLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGC 484 (714)
Q Consensus 406 ~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~ 484 (714)
.....+.+++.++.++... .++|++|++++|.+....+ .+.++++|++|++++|......|..+.++++|++|++++|
T Consensus 32 ~~~~c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPSGL-TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp TTSEEECCSTTCSSCCTTC-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCeEeeCCCCCcccccccc-cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 3444778888888887643 5789999999999877666 5899999999999998766555677999999999999987
Q ss_pred CCCCccCCC-CCCCCCcEEEeCCCcCCCcccccccccceEecccccceEecc--ccCCCCCCcEEecCCCCCCc-ccccc
Q 042374 485 KSLRSFPSN-LHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPS--SVGCLTNLKVLSLSQCPRLK-RISTS 560 (714)
Q Consensus 485 ~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~-~~~~~ 560 (714)
.. +.+|.. + ....+|++|++++|.+..+|. .+..+++|++|++++|...+ ..+..
T Consensus 111 ~l-~~~~~~~~--------------------~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 169 (353)
T 2z80_A 111 YL-SNLSSSWF--------------------KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169 (353)
T ss_dssp CC-SSCCHHHH--------------------TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT
T ss_pred cC-CcCCHhHh--------------------CCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHH
Confidence 53 333322 1 123456677777788888887 68999999999999995444 44667
Q ss_pred ccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc
Q 042374 561 ILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL 640 (714)
Q Consensus 561 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 640 (714)
+.++++|++|++++|.+....|..+..+++|++|++++|.+..+|..+ +..+++|+.|++++|.+..
T Consensus 170 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-------------~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIF-------------VDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHH-------------HHHTTTEEEEEEESCBCTT
T ss_pred ccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhh-------------hhhcccccEEECCCCcccc
Confidence 899999999999999988777889999999999999999998777654 5568999999999999876
Q ss_pred C--------CCCCCCCEEECCCCCCc-----ccchhhccCCCCCeeccccCccccccCC----CcCcccEeecccCcccc
Q 042374 641 N--------GCLSSLEYLDLSGNDFE-----SLPASIKQLSRLRKLHLCYCDKLQSIPE----LPLSLKWLDASNCERLQ 703 (714)
Q Consensus 641 ~--------~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~l~~~~~~~~lp~----~~~~L~~L~l~~c~~l~ 703 (714)
+ ...+.++.++++++.++ .+|.++..+++|++|++++|.+. .+|. .+++|+.|++++|+...
T Consensus 237 ~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 237 FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence 3 23567888888888776 57889999999999999999866 6774 35799999999997554
Q ss_pred ccc
Q 042374 704 TFP 706 (714)
Q Consensus 704 ~lp 706 (714)
..|
T Consensus 316 ~~~ 318 (353)
T 2z80_A 316 SCP 318 (353)
T ss_dssp CHH
T ss_pred cCC
Confidence 433
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=1.1e-21 Score=199.19 Aligned_cols=238 Identities=20% Similarity=0.238 Sum_probs=156.7
Q ss_pred EEEecCCCCCCCCCCCCCCCcccccCCCCCCccccCCc--ccccccEEeccCCcccccc---CCCCCCCCCcEEecCCCC
Q 042374 387 YLHWHEYPLKTLPFDFEPENLTELSLPYSKVEQSWGGK--RLLSSKFIDLSHSQYLIRM---PDLSEAPNLERINLLNCT 461 (714)
Q Consensus 387 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~--~~~~L~~L~l~~~~~~~~~---~~~~~l~~L~~L~L~~~~ 461 (714)
.++..++.+..+|..+. .++++|++++|.++.++... .+++|++|++++|.+.... ..+..+++|++|++++|.
T Consensus 11 ~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp EEECCSSCCSSCCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred EEEcCCCCcccCCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 45666666666665332 45555555555555444432 2444555555444433221 122334444444444443
Q ss_pred CCccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEecc--ccCC
Q 042374 462 NLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPS--SVGC 539 (714)
Q Consensus 462 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~--~~~~ 539 (714)
. ..+|..+..+++|++|+++ +|.+..++. .+..
T Consensus 90 i-~~l~~~~~~l~~L~~L~l~--------------------------------------------~n~l~~~~~~~~~~~ 124 (306)
T 2z66_A 90 V-ITMSSNFLGLEQLEHLDFQ--------------------------------------------HSNLKQMSEFSVFLS 124 (306)
T ss_dssp E-EEEEEEEETCTTCCEEECT--------------------------------------------TSEEESSTTTTTTTT
T ss_pred c-ccChhhcCCCCCCCEEECC--------------------------------------------CCcccccccchhhhh
Confidence 2 2333334444444444444 355555543 5788
Q ss_pred CCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCC-CCchhhhccccccccccCCccccccCccccCCCCCcccC
Q 042374 540 LTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLE-NFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQL 618 (714)
Q Consensus 540 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l 618 (714)
+++|++|++++|.+....+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.++.++...
T Consensus 125 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---------- 194 (306)
T 2z66_A 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA---------- 194 (306)
T ss_dssp CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT----------
T ss_pred ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHH----------
Confidence 8999999999998877777888889999999999987765 46778889999999999999887764332
Q ss_pred CCccCCCCCCCceeccCCCcCc-----CCCCCCCCEEECCCCCCcc-cchhhccCC-CCCeeccccCccccc
Q 042374 619 PSSVADTNDLEGLSLYLRNYAL-----NGCLSSLEYLDLSGNDFES-LPASIKQLS-RLRKLHLCYCDKLQS 683 (714)
Q Consensus 619 ~~~~~~~~~L~~L~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~-lp~~l~~l~-~L~~L~l~~~~~~~~ 683 (714)
+..+++|+.|++++|.+.. +..+++|+.|+|++|.++. .|..+..++ +|++|++++|++...
T Consensus 195 ---~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 195 ---FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp ---TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred ---hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 7788889999999988766 4567889999999998885 455677774 899999998887543
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=5.9e-22 Score=201.25 Aligned_cols=249 Identities=20% Similarity=0.203 Sum_probs=154.1
Q ss_pred cCCCCceEEEecCCCCCCCCCCC--CCCCcccccCCCCCCcccc---C-CcccccccEEeccCCccccccCCCCCCCCCc
Q 042374 380 YLPEELRYLHWHEYPLKTLPFDF--EPENLTELSLPYSKVEQSW---G-GKRLLSSKFIDLSHSQYLIRMPDLSEAPNLE 453 (714)
Q Consensus 380 ~l~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~---~-~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~ 453 (714)
.++.+++.|+++++.+..+|... .+++|++|++++|.+.... . ...+++|++|++++|.+....+.+..+++|+
T Consensus 25 ~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104 (306)
T ss_dssp CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCC
Confidence 34568999999999999998763 7899999999999998653 1 1238999999999999876555688999999
Q ss_pred EEecCCCCCCccCC-ccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceE
Q 042374 454 RINLLNCTNLVSVP-SSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKE 532 (714)
Q Consensus 454 ~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~ 532 (714)
+|++++|......+ ..+..+++|++|++++|......+.
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------------------------------- 144 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG---------------------------------------- 144 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT----------------------------------------
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh----------------------------------------
Confidence 99999986543333 4788899999999988754332222
Q ss_pred eccccCCCCCCcEEecCCCCCCc-cccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCC
Q 042374 533 VPSSVGCLTNLKVLSLSQCPRLK-RISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKG 611 (714)
Q Consensus 533 lp~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~ 611 (714)
.+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+....|..+..+++|++|++++|.++.++...
T Consensus 145 ---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--- 218 (306)
T 2z66_A 145 ---IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP--- 218 (306)
T ss_dssp ---TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGG---
T ss_pred ---hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhh---
Confidence 23344444444444444332 23444444444444444444443333344444444444444444444433321
Q ss_pred CCCcccCCCccCCCCCCCceeccCCCcCc-----CCCC-CCCCEEECCCCCCcc------cchhhccCCCCCeeccccCc
Q 042374 612 EGTESQLPSSVADTNDLEGLSLYLRNYAL-----NGCL-SSLEYLDLSGNDFES------LPASIKQLSRLRKLHLCYCD 679 (714)
Q Consensus 612 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-----~~~l-~~L~~L~L~~n~l~~------lp~~l~~l~~L~~L~l~~~~ 679 (714)
+..+++|+.|++++|.+.. +..+ ++|+.|+|++|.++. ++.|+. .++.+.+..+.
T Consensus 219 ----------~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~---~~~~~~~~~~~ 285 (306)
T 2z66_A 219 ----------YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK---DQRQLLVEVER 285 (306)
T ss_dssp ----------GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHH---HTGGGBSCGGG
T ss_pred ----------ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHH---hhhhhhccccc
Confidence 3444455555555554433 2334 378888888887762 234443 34445555555
Q ss_pred cccccCCC
Q 042374 680 KLQSIPEL 687 (714)
Q Consensus 680 ~~~~lp~~ 687 (714)
.....|..
T Consensus 286 ~~C~~p~~ 293 (306)
T 2z66_A 286 MECATPSD 293 (306)
T ss_dssp CBEEESGG
T ss_pred cccCCchh
Confidence 55555543
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=5.4e-21 Score=205.21 Aligned_cols=237 Identities=16% Similarity=0.141 Sum_probs=165.5
Q ss_pred eEEEecCCCCCCCCCCCCCCCcccccCCCCCCccccCCcc--cccccEEeccCCccccccC-CCCCCCCCcEEecCCCCC
Q 042374 386 RYLHWHEYPLKTLPFDFEPENLTELSLPYSKVEQSWGGKR--LLSSKFIDLSHSQYLIRMP-DLSEAPNLERINLLNCTN 462 (714)
Q Consensus 386 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~--~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~ 462 (714)
..++..+..+..+|..+ +.++++|++++|+++.+..... +++|++|++++|.+....+ .|.++++|++|+|++|..
T Consensus 57 ~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp CEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 45666666777777544 3578888888888887755443 7888888888887776655 477888888888888765
Q ss_pred CccCCccccCCCCCCEEecCCCCCCCccCC-CCC-CCCCcEEEeCCCcCCCcccc----cccccceEecccccceEeccc
Q 042374 463 LVSVPSSIQNFNHLSMLCFEGCKSLRSFPS-NLH-FVCPVTINCGGCVNLTEFPQ----ISGSVTKLILWETAIKEVPSS 536 (714)
Q Consensus 463 ~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~~-~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~~~i~~lp~~ 536 (714)
....+..+..+++|++|++++|... .+|. .+. +.+|+.|++++|..+..++. ...+|++|++++|.+..+|.
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~- 213 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN- 213 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-
T ss_pred CccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-
Confidence 4444455778888888888886543 4443 333 77778888777766665543 24567777777777777653
Q ss_pred cCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcc
Q 042374 537 VGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTES 616 (714)
Q Consensus 537 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 616 (714)
+..+++|+.|++++|.+.+..|..+.++++|+.|++++|.+....+..+..+++|+.|++++|.++.+|...
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-------- 285 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL-------- 285 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS--------
T ss_pred ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH--------
Confidence 667777777777777776666777777777777777777766655666777777777777777777666543
Q ss_pred cCCCccCCCCCCCceeccCCCc
Q 042374 617 QLPSSVADTNDLEGLSLYLRNY 638 (714)
Q Consensus 617 ~l~~~~~~~~~L~~L~l~~~~~ 638 (714)
+..+++|+.|+|++|.+
T Consensus 286 -----~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 286 -----FTPLRYLVELHLHHNPW 302 (452)
T ss_dssp -----STTCTTCCEEECCSSCE
T ss_pred -----hccccCCCEEEccCCCc
Confidence 55666677777766654
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=7e-23 Score=208.76 Aligned_cols=232 Identities=16% Similarity=0.037 Sum_probs=134.3
Q ss_pred CcccccCCCCCCccccCCcc--cccccEEeccCCccccccC-CCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecC
Q 042374 406 NLTELSLPYSKVEQSWGGKR--LLSSKFIDLSHSQYLIRMP-DLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFE 482 (714)
Q Consensus 406 ~L~~L~l~~~~i~~~~~~~~--~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~ 482 (714)
.+...+++.+.+........ +++|++|++++|.+....+ .+..+++|++|++++|..... ++ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LD-LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-EE-ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-hh-hhhcCCCCEEECc
Confidence 45556677777765543322 6789999999998877665 588888999999988865433 33 8888899999998
Q ss_pred CCCCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEeccccCCCCCCcEEecCCCCCCcccccccc
Q 042374 483 GCKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSIL 562 (714)
Q Consensus 483 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 562 (714)
+|.. +.++. ..+ |++|++++|.+..++.. .+++|++|++++|.+....+..+.
T Consensus 89 ~n~l-~~l~~---~~~---------------------L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~ 141 (317)
T 3o53_A 89 NNYV-QELLV---GPS---------------------IETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEG 141 (317)
T ss_dssp SSEE-EEEEE---CTT---------------------CCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTG
T ss_pred CCcc-ccccC---CCC---------------------cCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhh
Confidence 8643 22221 234 44455555555544432 244555555555555444444555
Q ss_pred CCCCCCEEEecCCCCCCCCchhh-hccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc-
Q 042374 563 KLKSLQNLYLIQCFDLENFPEIL-EKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL- 640 (714)
Q Consensus 563 ~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~- 640 (714)
.+++|++|++++|.+....+..+ ..+++|++|++++|.++.++. ...+++|+.|++++|.+..
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------------~~~l~~L~~L~Ls~N~l~~l 206 (317)
T 3o53_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG---------------QVVFAKLKTLDLSSNKLAFM 206 (317)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC---------------CCCCTTCCEEECCSSCCCEE
T ss_pred ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc---------------ccccccCCEEECCCCcCCcc
Confidence 55555555555555444333333 245555555555555554432 1234555555555555543
Q ss_pred ---CCCCCCCCEEECCCCCCcccchhhccCCCCCeeccccCccc
Q 042374 641 ---NGCLSSLEYLDLSGNDFESLPASIKQLSRLRKLHLCYCDKL 681 (714)
Q Consensus 641 ---~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~~~~~ 681 (714)
+..+++|+.|+|++|+++.+|..+..+++|+.|++++|++.
T Consensus 207 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 207 GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred hhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 33455555555555555555555555555555555555554
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=4.1e-21 Score=192.79 Aligned_cols=199 Identities=19% Similarity=0.173 Sum_probs=97.8
Q ss_pred ccccEEeccCCccccccC-CCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCCccC-CCCCCCCCcEEEe
Q 042374 427 LSSKFIDLSHSQYLIRMP-DLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFP-SNLHFVCPVTINC 504 (714)
Q Consensus 427 ~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l 504 (714)
++|++|++++|.+....+ .|..+++|++|++++|......|..+..+++|++|++++|..++.++ ..+.
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~--------- 102 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH--------- 102 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTT---------
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhc---------
Confidence 344444444444433333 24555555555555554333334455555555555555543222221 1110
Q ss_pred CCCcCCCcccccccccceEecccccceEe-ccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCch
Q 042374 505 GGCVNLTEFPQISGSVTKLILWETAIKEV-PSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPE 583 (714)
Q Consensus 505 ~~~~~l~~~~~~~~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 583 (714)
...+|++|++++|.+..+ |..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+.
T Consensus 103 -----------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 103 -----------GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp -----------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred -----------CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence 001122222222333333 23356666677777776665544444566666677777766655443334
Q ss_pred hhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc-----CCCCCCCCEEECCCCCCc
Q 042374 584 ILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL-----NGCLSSLEYLDLSGNDFE 658 (714)
Q Consensus 584 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-----~~~l~~L~~L~L~~n~l~ 658 (714)
.+..+++|++|++++|.+..++.. .+..+++|+.|++++|.+.. +..+++|+.|++++|.+.
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~-------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHPH-------------AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTT-------------TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HhcCccccCEEECCCCcccccCHh-------------HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 466666666666666666544222 14455555555555555444 334455555555555544
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=5.7e-21 Score=204.27 Aligned_cols=239 Identities=16% Similarity=0.125 Sum_probs=158.4
Q ss_pred ceEEEecCCCCCCCCCCCCCCCcccccCCCCCCccccCCcc--cccccEEeccCCccccccC-CCCCCCCCcEEecCCCC
Q 042374 385 LRYLHWHEYPLKTLPFDFEPENLTELSLPYSKVEQSWGGKR--LLSSKFIDLSHSQYLIRMP-DLSEAPNLERINLLNCT 461 (714)
Q Consensus 385 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~--~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~ 461 (714)
.+.++..+..+..+|..+. .+++.|++++|++..+..... +++|++|+|++|.+....+ .|.++++|++|+|++|.
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 3456666777777776543 577788888888877765433 7888888888887766554 47778888888888875
Q ss_pred CCccCCccccCCCCCCEEecCCCCCCCccCCCCC-CCCCcEEEeCCCcCCCcccc----cccccceEecccccceEeccc
Q 042374 462 NLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLH-FVCPVTINCGGCVNLTEFPQ----ISGSVTKLILWETAIKEVPSS 536 (714)
Q Consensus 462 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~~~i~~lp~~ 536 (714)
.....+..+..+++|++|++++|......+..+. +.+|+.|+++++..+..++. ...+|++|++++|.++.+|.
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~- 202 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN- 202 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-
Confidence 4433334677888888888887654333232333 67777777777666655442 23466666777777766653
Q ss_pred cCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcc
Q 042374 537 VGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTES 616 (714)
Q Consensus 537 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 616 (714)
+..+++|+.|++++|.+....|..+.++++|+.|++.+|.+....+..|.++++|++|++++|.++.+|...
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-------- 274 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL-------- 274 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT--------
T ss_pred cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhH--------
Confidence 666777777777777666665666777777777777777666555566667777777777777776665543
Q ss_pred cCCCccCCCCCCCceeccCCCc
Q 042374 617 QLPSSVADTNDLEGLSLYLRNY 638 (714)
Q Consensus 617 ~l~~~~~~~~~L~~L~l~~~~~ 638 (714)
+..+++|+.|+|++|.+
T Consensus 275 -----~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 275 -----FTPLHHLERIHLHHNPW 291 (440)
T ss_dssp -----TSSCTTCCEEECCSSCE
T ss_pred -----hccccCCCEEEcCCCCc
Confidence 55566666666666654
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=1.1e-20 Score=202.18 Aligned_cols=238 Identities=18% Similarity=0.229 Sum_probs=185.4
Q ss_pred CcccccCCCCCCccccCCcccccccEEeccCCccccccC-CCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCC
Q 042374 406 NLTELSLPYSKVEQSWGGKRLLSSKFIDLSHSQYLIRMP-DLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGC 484 (714)
Q Consensus 406 ~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~ 484 (714)
....++..+..++.++... ..+++.|+|++|.+....+ .|.++++|++|+|++|......+..+.++++|++|+|++|
T Consensus 44 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp TSCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 3556778888888887643 5889999999999887765 6999999999999998766555678999999999999997
Q ss_pred CCCCccCC-CCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEecc-ccCCCCCCcEEecCCCCCCccccc-cc
Q 042374 485 KSLRSFPS-NLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPS-SVGCLTNLKVLSLSQCPRLKRIST-SI 561 (714)
Q Consensus 485 ~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~-~~ 561 (714)
.. +.+|. .+. ...+|++|++++|.+..+|. .+..+++|++|++++|...+.++. .+
T Consensus 123 ~l-~~~~~~~~~--------------------~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~ 181 (440)
T 3zyj_A 123 RL-TTIPNGAFV--------------------YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181 (440)
T ss_dssp CC-SSCCTTTSC--------------------SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT
T ss_pred cC-CeeCHhHhh--------------------ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchh
Confidence 54 44443 221 12345666666677887776 478888999999988766666654 57
Q ss_pred cCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc-
Q 042374 562 LKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL- 640 (714)
Q Consensus 562 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~- 640 (714)
.++++|++|++++|.+. .+| .+..+++|++|++++|.++.++... +..+++|+.|++++|.+..
T Consensus 182 ~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~-------------~~~l~~L~~L~L~~n~l~~~ 246 (440)
T 3zyj_A 182 EGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGS-------------FQGLMHLQKLWMIQSQIQVI 246 (440)
T ss_dssp TTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTT-------------TTTCTTCCEEECTTCCCCEE
T ss_pred hcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhh-------------hccCccCCEEECCCCceeEE
Confidence 78889999999888765 455 4788888999999998887765432 7788889999999888766
Q ss_pred ----CCCCCCCCEEECCCCCCcccch-hhccCCCCCeeccccCcc
Q 042374 641 ----NGCLSSLEYLDLSGNDFESLPA-SIKQLSRLRKLHLCYCDK 680 (714)
Q Consensus 641 ----~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~~~~ 680 (714)
+..+++|+.|+|++|+++.+|. .+..+++|+.|+|++|++
T Consensus 247 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 247 ERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred ChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 5678899999999999988765 457788999999988875
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=3.2e-21 Score=193.54 Aligned_cols=220 Identities=18% Similarity=0.168 Sum_probs=180.0
Q ss_pred eEEEecCCCCCCCCCCCCCCCcccccCCCCCCccccCCcc--cccccEEeccCCccccccC-CCCCCCCCcEEecCCCCC
Q 042374 386 RYLHWHEYPLKTLPFDFEPENLTELSLPYSKVEQSWGGKR--LLSSKFIDLSHSQYLIRMP-DLSEAPNLERINLLNCTN 462 (714)
Q Consensus 386 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~--~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~ 462 (714)
+.++..+..+..+|..+ +.++++|++++|.++.++.... +++|++|++++|.+....+ .+..+++|++|++++|..
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 56778888888888654 5789999999999998876443 8999999999999877755 589999999999999874
Q ss_pred CccC-CccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEeccc-cCCC
Q 042374 463 LVSV-PSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSS-VGCL 540 (714)
Q Consensus 463 ~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~-~~~l 540 (714)
+..+ |..+..+++|++|++++|......|..+. ...+|++|++++|.+..+|.. +..+
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--------------------~l~~L~~L~l~~n~l~~~~~~~~~~l 152 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR--------------------GLAALQYLYLQDNALQALPDDTFRDL 152 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT--------------------TCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh--------------------CCcCCCEEECCCCcccccCHhHhccC
Confidence 4544 67899999999999999765444343332 123455666666777777765 8899
Q ss_pred CCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCC
Q 042374 541 TNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPS 620 (714)
Q Consensus 541 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~ 620 (714)
++|++|++++|.+....+..+..+++|++|++++|.+....|..+..+++|+.|++++|.++.++...
T Consensus 153 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------------ 220 (285)
T 1ozn_A 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA------------ 220 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH------------
T ss_pred CCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHH------------
Confidence 99999999999876655566899999999999999988777889999999999999999998877554
Q ss_pred ccCCCCCCCceeccCCCcC
Q 042374 621 SVADTNDLEGLSLYLRNYA 639 (714)
Q Consensus 621 ~~~~~~~L~~L~l~~~~~~ 639 (714)
+..+++|+.|++++|.+.
T Consensus 221 -~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 221 -LAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp -HTTCTTCCEEECCSSCEE
T ss_pred -cccCcccCEEeccCCCcc
Confidence 788999999999999865
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=9.2e-21 Score=203.44 Aligned_cols=239 Identities=19% Similarity=0.201 Sum_probs=193.0
Q ss_pred CcccccCCCCCCccccCCcccccccEEeccCCccccccC-CCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCC
Q 042374 406 NLTELSLPYSKVEQSWGGKRLLSSKFIDLSHSQYLIRMP-DLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGC 484 (714)
Q Consensus 406 ~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~ 484 (714)
....++.++..++.++... .+++++|+|++|.+....+ .|.++++|++|+|++|......+..+.++++|++|+|++|
T Consensus 55 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SSCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 3456777788888776533 5789999999999887766 5899999999999998766666688999999999999997
Q ss_pred CCCCccCCC-CCCCCCcEEEeCCCcCCCcccccccccceEecccccceEecc-ccCCCCCCcEEecCCCCCCccccc-cc
Q 042374 485 KSLRSFPSN-LHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPS-SVGCLTNLKVLSLSQCPRLKRIST-SI 561 (714)
Q Consensus 485 ~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~-~~ 561 (714)
.. ..+|.. +. ..++|++|++++|.+..+|. .+..+++|+.|++++|...+.++. .+
T Consensus 134 ~l-~~~~~~~~~--------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~ 192 (452)
T 3zyi_A 134 WL-TVIPSGAFE--------------------YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192 (452)
T ss_dssp CC-SBCCTTTSS--------------------SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT
T ss_pred cC-CccChhhhc--------------------ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhc
Confidence 54 344332 21 23356667777788888876 488999999999999777777665 58
Q ss_pred cCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc-
Q 042374 562 LKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL- 640 (714)
Q Consensus 562 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~- 640 (714)
.++++|+.|++++|.+.. +| .+..+++|++|++++|.+..++... +..+++|+.|++++|.+..
T Consensus 193 ~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~-------------~~~l~~L~~L~L~~n~l~~~ 257 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGS-------------FHGLSSLKKLWVMNSQVSLI 257 (452)
T ss_dssp TTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGG-------------GTTCTTCCEEECTTSCCCEE
T ss_pred cCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCccc-------------ccCccCCCEEEeCCCcCceE
Confidence 899999999999998654 44 4888999999999999998775443 8889999999999998866
Q ss_pred ----CCCCCCCCEEECCCCCCcccch-hhccCCCCCeeccccCccc
Q 042374 641 ----NGCLSSLEYLDLSGNDFESLPA-SIKQLSRLRKLHLCYCDKL 681 (714)
Q Consensus 641 ----~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~~~~~ 681 (714)
+..+++|+.|+|++|+++.+|. .+..+++|+.|+|++|++.
T Consensus 258 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 258 ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 6678999999999999998875 4678999999999999864
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=1.3e-22 Score=206.84 Aligned_cols=237 Identities=17% Similarity=0.143 Sum_probs=176.5
Q ss_pred CCCCcccccCCCCCCccccCCc--ccccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEe
Q 042374 403 EPENLTELSLPYSKVEQSWGGK--RLLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLC 480 (714)
Q Consensus 403 ~~~~L~~L~l~~~~i~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~ 480 (714)
.+++|++|++++|.++.+.+.. .+++|++|++++|.+....+ +..+++|++|++++|.. .. +...++|++|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l-~~----l~~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV-QE----LLVGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEE-EE----EEECTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcc-cc----ccCCCCcCEEE
Confidence 4568999999999999887533 39999999999999876555 89999999999999864 33 33458999999
Q ss_pred cCCCCCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEecc-ccCCCCCCcEEecCCCCCCccccc
Q 042374 481 FEGCKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPS-SVGCLTNLKVLSLSQCPRLKRIST 559 (714)
Q Consensus 481 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~ 559 (714)
+++|......+. ..++|++|++++|.+..++. .++.+++|++|++++|.+....+.
T Consensus 106 l~~n~l~~~~~~-----------------------~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 106 AANNNISRVSCS-----------------------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp CCSSCCSEEEEC-----------------------CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred CCCCccCCcCcc-----------------------ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 999754332211 12346666666677776644 467777888888888777665555
Q ss_pred cc-cCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCc
Q 042374 560 SI-LKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNY 638 (714)
Q Consensus 560 ~~-~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 638 (714)
.+ ..+++|++|++++|.+.. ++. ...+++|++|++++|.++.+|.. +..+++|+.|++++|.+
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~-~~~-~~~l~~L~~L~Ls~N~l~~l~~~--------------~~~l~~L~~L~L~~N~l 226 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKTLDLSSNKLAFMGPE--------------FQSAAGVTWISLRNNKL 226 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCE-EEC-CCCCTTCCEEECCSSCCCEECGG--------------GGGGTTCSEEECTTSCC
T ss_pred HHhhccCcCCEEECCCCcCcc-ccc-ccccccCCEEECCCCcCCcchhh--------------hcccCcccEEECcCCcc
Confidence 55 367788888888776543 232 33477788888888877766554 56677888888888877
Q ss_pred Cc----CCCCCCCCEEECCCCCCc--ccchhhccCCCCCeeccccCcccccc
Q 042374 639 AL----NGCLSSLEYLDLSGNDFE--SLPASIKQLSRLRKLHLCYCDKLQSI 684 (714)
Q Consensus 639 ~~----~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~l~~~~~~~~l 684 (714)
.. +..+++|+.|++++|.++ .+|.++..+++|+.|++.+|+.+...
T Consensus 227 ~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 227 VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred cchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 65 566889999999999998 78889999999999999977655433
No 67
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=1.9e-23 Score=225.73 Aligned_cols=345 Identities=15% Similarity=0.069 Sum_probs=235.0
Q ss_pred HHHhcccCceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCCCCC--CC-CCC----CcccccCCCCC
Q 042374 344 QAFAKMSNLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTLPF--DF-EPE----NLTELSLPYSK 416 (714)
Q Consensus 344 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~--~~-~~~----~L~~L~l~~~~ 416 (714)
..|..+++|+.|++++|.+..... ..+...+... .++++|+++++.+..... .. .+. +|++|++++|.
T Consensus 22 ~~~~~~~~L~~L~L~~~~l~~~~~----~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 96 (461)
T 1z7x_W 22 ELLPLLQQCQVVRLDDCGLTEARC----KDISSALRVN-PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 96 (461)
T ss_dssp HHHHHHTTCSEEEEESSCCCHHHH----HHHHHHHHTC-TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC
T ss_pred HHHhhcCCccEEEccCCCCCHHHH----HHHHHHHHhC-CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC
Confidence 347788999999999886542100 0111222222 368889998887654211 11 222 69999999998
Q ss_pred Cccc-----cC-CcccccccEEeccCCccccccCC------CCCCCCCcEEecCCCCCCc----cCCccccCCCCCCEEe
Q 042374 417 VEQS-----WG-GKRLLSSKFIDLSHSQYLIRMPD------LSEAPNLERINLLNCTNLV----SVPSSIQNFNHLSMLC 480 (714)
Q Consensus 417 i~~~-----~~-~~~~~~L~~L~l~~~~~~~~~~~------~~~l~~L~~L~L~~~~~~~----~lp~~~~~l~~L~~L~ 480 (714)
+... +. ...+++|++|++++|.+....+. ....++|++|++++|.... .++..+..+++|++|+
T Consensus 97 i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 97 LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176 (461)
T ss_dssp CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE
Confidence 8742 22 12378999999999986543221 3345679999999886544 2355677788999999
Q ss_pred cCCCCCCCccCCCC------CCCCCcEEEeCCCcCCCc----ccc---cccccceEecccccceEe------ccccCCCC
Q 042374 481 FEGCKSLRSFPSNL------HFVCPVTINCGGCVNLTE----FPQ---ISGSVTKLILWETAIKEV------PSSVGCLT 541 (714)
Q Consensus 481 l~~~~~~~~~~~~~------~~~~L~~L~l~~~~~l~~----~~~---~~~~L~~L~l~~~~i~~l------p~~~~~l~ 541 (714)
+++|......+..+ ...+|+.|++++|..-.. ++. ..++|++|++++|.+... +..+..++
T Consensus 177 L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~ 256 (461)
T 1z7x_W 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS 256 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred CcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCC
Confidence 99876432222111 145888999988743321 232 246788999998887643 22234688
Q ss_pred CCcEEecCCCCCCcc----ccccccCCCCCCEEEecCCCCCCCCchhhhc-----cccccccccCCccccccCccccCCC
Q 042374 542 NLKVLSLSQCPRLKR----ISTSILKLKSLQNLYLIQCFDLENFPEILEK-----MEYLNYNALGRTKIRELPSTFEKGE 612 (714)
Q Consensus 542 ~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-----l~~L~~L~l~~~~l~~~~~~~~~~~ 612 (714)
+|++|++++|.+... ++..+..+++|++|++++|.+....+..+.. .++|++|++++|.++....
T Consensus 257 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~------ 330 (461)
T 1z7x_W 257 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC------ 330 (461)
T ss_dssp CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH------
T ss_pred CceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHH------
Confidence 999999999876553 5667777899999999988764332333333 2689999999988764321
Q ss_pred CCcccCCCccCCCCCCCceeccCCCcCcC----------CCCCCCCEEECCCCCCc-----ccchhhccCCCCCeecccc
Q 042374 613 GTESQLPSSVADTNDLEGLSLYLRNYALN----------GCLSSLEYLDLSGNDFE-----SLPASIKQLSRLRKLHLCY 677 (714)
Q Consensus 613 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~----------~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~l~~ 677 (714)
..++..+..+++|+.|++++|.+.+. ...++|++|+|++|.++ .+|..+..+++|++|++++
T Consensus 331 ---~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 407 (461)
T 1z7x_W 331 ---SHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 407 (461)
T ss_dssp ---HHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCS
T ss_pred ---HHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCC
Confidence 12344467789999999999988661 13679999999999998 6888899999999999999
Q ss_pred Ccccc--------ccCCCcCcccEeecccCccc
Q 042374 678 CDKLQ--------SIPELPLSLKWLDASNCERL 702 (714)
Q Consensus 678 ~~~~~--------~lp~~~~~L~~L~l~~c~~l 702 (714)
|++.. .+|...++|+.|.+.++..-
T Consensus 408 N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 408 NCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp SSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 98763 35655567899988887543
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=4e-21 Score=207.19 Aligned_cols=228 Identities=15% Similarity=0.053 Sum_probs=160.5
Q ss_pred cccccEEeccCCccccccC-CCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEe
Q 042374 426 LLSSKFIDLSHSQYLIRMP-DLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINC 504 (714)
Q Consensus 426 ~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 504 (714)
+++|++|+|++|.+....| .|..+++|++|+|++|......| ++.+++|++|++++|.. +.+|.
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l-~~l~~------------ 97 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-QELLV------------ 97 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEE-EEEEE------------
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcC-CCCCC------------
Confidence 5688999999998877665 58888899999998886544333 88888888998888642 22221
Q ss_pred CCCcCCCcccccccccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchh
Q 042374 505 GGCVNLTEFPQISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEI 584 (714)
Q Consensus 505 ~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 584 (714)
.++|+.|++++|.+..++.. .+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..|..
T Consensus 98 ------------~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (487)
T 3oja_A 98 ------------GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (487)
T ss_dssp ------------CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGG
T ss_pred ------------CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHH
Confidence 14566666666777766543 4567788888877777666777777778888888777776655655
Q ss_pred hh-ccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc----CCCCCCCCEEECCCCCCcc
Q 042374 585 LE-KMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL----NGCLSSLEYLDLSGNDFES 659 (714)
Q Consensus 585 l~-~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~----~~~l~~L~~L~L~~n~l~~ 659 (714)
+. .+++|++|++++|.++.+|. ...+++|+.|+|++|.+.. ++.+++|+.|+|++|.++.
T Consensus 164 l~~~l~~L~~L~Ls~N~l~~~~~---------------~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNFIYDVKG---------------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL 228 (487)
T ss_dssp GGGGTTTCCEEECTTSCCCEEEC---------------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE
T ss_pred HhhhCCcccEEecCCCccccccc---------------cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc
Confidence 54 67778888888877766643 3346777777777777755 4567788888888888888
Q ss_pred cchhhccCCCCCeeccccCccc-cccCCC---cCcccEeecc
Q 042374 660 LPASIKQLSRLRKLHLCYCDKL-QSIPEL---PLSLKWLDAS 697 (714)
Q Consensus 660 lp~~l~~l~~L~~L~l~~~~~~-~~lp~~---~~~L~~L~l~ 697 (714)
+|.++..+++|+.|++++|++. +.+|.. .++|+.++++
T Consensus 229 lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 8877777888888888888766 444432 3345555553
No 69
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=4.6e-23 Score=222.63 Aligned_cols=333 Identities=18% Similarity=0.127 Sum_probs=237.9
Q ss_pred cCceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCC-----CCCCC-CCCCcccccCCCCCCccccCC
Q 042374 350 SNLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKT-----LPFDF-EPENLTELSLPYSKVEQSWGG 423 (714)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~-----~~~~~-~~~~L~~L~l~~~~i~~~~~~ 423 (714)
++++.|+++++.+.... ....+..++ +++.|+++++.+.. ++..+ .+++|++|++++|.+.+....
T Consensus 3 ~~l~~L~Ls~~~l~~~~-------~~~~~~~~~-~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 74 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDAR-------WAELLPLLQ-QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH 74 (461)
T ss_dssp EEEEEEEEESCCCCHHH-------HHHHHHHHT-TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH
T ss_pred ccceehhhhhcccCchh-------HHHHHhhcC-CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHH
Confidence 56788999888654311 111122233 78999999998773 23333 568999999999998764321
Q ss_pred c---ccc----cccEEeccCCccccc----cC-CCCCCCCCcEEecCCCCCCccCCccc-----cCCCCCCEEecCCCCC
Q 042374 424 K---RLL----SSKFIDLSHSQYLIR----MP-DLSEAPNLERINLLNCTNLVSVPSSI-----QNFNHLSMLCFEGCKS 486 (714)
Q Consensus 424 ~---~~~----~L~~L~l~~~~~~~~----~~-~~~~l~~L~~L~L~~~~~~~~lp~~~-----~~l~~L~~L~l~~~~~ 486 (714)
. .+. +|++|++++|.+... ++ .+..+++|++|++++|......+..+ ...++|++|++++|..
T Consensus 75 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 154 (461)
T 1z7x_W 75 CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154 (461)
T ss_dssp HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCC
Confidence 1 133 799999999997742 23 58899999999999987543222222 2356899999999865
Q ss_pred CCc----cCCCCC-CCCCcEEEeCCCcCCCcc-----cc----cccccceEecccccceE-----eccccCCCCCCcEEe
Q 042374 487 LRS----FPSNLH-FVCPVTINCGGCVNLTEF-----PQ----ISGSVTKLILWETAIKE-----VPSSVGCLTNLKVLS 547 (714)
Q Consensus 487 ~~~----~~~~~~-~~~L~~L~l~~~~~l~~~-----~~----~~~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~ 547 (714)
... ++..+. +++|++|+++++. +... .. ..++|++|++++|.+.. ++..+..+++|++|+
T Consensus 155 ~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 233 (461)
T 1z7x_W 155 SAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233 (461)
T ss_dssp BGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEE
T ss_pred CHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEe
Confidence 442 233333 6899999999976 3321 11 23489999999999886 577788899999999
Q ss_pred cCCCCCCccc-----cccccCCCCCCEEEecCCCCCCC----CchhhhccccccccccCCccccccCccccCCCCCcccC
Q 042374 548 LSQCPRLKRI-----STSILKLKSLQNLYLIQCFDLEN----FPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQL 618 (714)
Q Consensus 548 l~~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l 618 (714)
+++|.+.... +..+..+++|++|++++|.+... ++..+.++++|++|++++|.+...+... +
T Consensus 234 Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~---------l 304 (461)
T 1z7x_W 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL---------L 304 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH---------H
T ss_pred ccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH---------H
Confidence 9999765432 22234689999999999977643 6777888999999999999886432211 1
Q ss_pred CCc-cCCCCCCCceeccCCCcCc---------CCCCCCCCEEECCCCCCccc-chhh----cc-CCCCCeeccccCcccc
Q 042374 619 PSS-VADTNDLEGLSLYLRNYAL---------NGCLSSLEYLDLSGNDFESL-PASI----KQ-LSRLRKLHLCYCDKLQ 682 (714)
Q Consensus 619 ~~~-~~~~~~L~~L~l~~~~~~~---------~~~l~~L~~L~L~~n~l~~l-p~~l----~~-l~~L~~L~l~~~~~~~ 682 (714)
... ....++|+.|++++|.+.. +..+++|++|+|++|.++.. +..+ .. .++|++|++++|.+..
T Consensus 305 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred HHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 111 2234699999999999876 34569999999999998843 2333 22 6899999999998764
Q ss_pred ----ccCCC---cCcccEeecccCc
Q 042374 683 ----SIPEL---PLSLKWLDASNCE 700 (714)
Q Consensus 683 ----~lp~~---~~~L~~L~l~~c~ 700 (714)
.+|.. .++|+.|++++|+
T Consensus 385 ~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 385 SSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred hhHHHHHHHHHhCCCccEEECCCCC
Confidence 66643 5899999999995
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=9.9e-21 Score=204.12 Aligned_cols=229 Identities=17% Similarity=0.130 Sum_probs=176.3
Q ss_pred CCCCcccccCCCCCCccccCCcc--cccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEe
Q 042374 403 EPENLTELSLPYSKVEQSWGGKR--LLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLC 480 (714)
Q Consensus 403 ~~~~L~~L~l~~~~i~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~ 480 (714)
.+++|++|++++|.+..+++... +++|++|+|++|.+....+ +..+++|++|+|++|.. ..+| ..++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~----~~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV-QELL----VGPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEE-EEEE----ECTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcC-CCCC----CCCCcCEEE
Confidence 34589999999999999875443 9999999999999876666 99999999999999864 3333 348999999
Q ss_pred cCCCCCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEe-ccccCCCCCCcEEecCCCCCCccccc
Q 042374 481 FEGCKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEV-PSSVGCLTNLKVLSLSQCPRLKRIST 559 (714)
Q Consensus 481 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~ 559 (714)
+++|......+. ..++|+.|++++|.+..+ |..++.+++|++|++++|.+.+..|.
T Consensus 106 L~~N~l~~~~~~-----------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (487)
T 3oja_A 106 AANNNISRVSCS-----------------------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (487)
T ss_dssp CCSSCCCCEEEC-----------------------CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG
T ss_pred CcCCcCCCCCcc-----------------------ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH
Confidence 999765432221 123566666777777766 34577788888888888887776676
Q ss_pred ccc-CCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCc
Q 042374 560 SIL-KLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNY 638 (714)
Q Consensus 560 ~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 638 (714)
.+. .+++|++|++++|.+.+. |. ...+++|++|++++|.++.+|.. +..+++|+.|++++|.+
T Consensus 163 ~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~--------------~~~l~~L~~L~Ls~N~l 226 (487)
T 3oja_A 163 ELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPE--------------FQSAAGVTWISLRNNKL 226 (487)
T ss_dssp GGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGG--------------GGGGTTCSEEECTTSCC
T ss_pred HHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCHh--------------HcCCCCccEEEecCCcC
Confidence 665 678888888888876543 32 33577888888888888766654 66778888888888887
Q ss_pred Cc----CCCCCCCCEEECCCCCCc--ccchhhccCCCCCeeccc
Q 042374 639 AL----NGCLSSLEYLDLSGNDFE--SLPASIKQLSRLRKLHLC 676 (714)
Q Consensus 639 ~~----~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~l~ 676 (714)
.. ++.+++|+.|++++|.+. .+|.++..++.|+.+++.
T Consensus 227 ~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 227 VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 65 566789999999999998 788889999999999886
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.82 E-value=2e-21 Score=197.47 Aligned_cols=245 Identities=19% Similarity=0.173 Sum_probs=155.1
Q ss_pred CCcccccCCCCCCccccCCcccccccEEeccCCccc-cccCC-CC-------CCCCCcEEecCCCCCCccCCccc--cCC
Q 042374 405 ENLTELSLPYSKVEQSWGGKRLLSSKFIDLSHSQYL-IRMPD-LS-------EAPNLERINLLNCTNLVSVPSSI--QNF 473 (714)
Q Consensus 405 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~-~~~~~-~~-------~l~~L~~L~L~~~~~~~~lp~~~--~~l 473 (714)
.+|+.|++++|.+ .++.. ....|+.|++++|.+. ...+. +. .+++|++|++++|...+.+|..+ +.+
T Consensus 43 ~~L~~l~l~~n~l-~~p~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQ-FTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp EECTTHHHHCCTT-CCCHH-HHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CCceeEeeccccc-ccHHH-HHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 4677777777777 33321 2333777777777763 23332 22 57788888888877666677665 778
Q ss_pred CCCCEEecCCCCCCCccCCCCCCCCCcEEEeCCCcCCCccc-ccccccceEecccccceEec-cccCCCCCCcEEecCCC
Q 042374 474 NHLSMLCFEGCKSLRSFPSNLHFVCPVTINCGGCVNLTEFP-QISGSVTKLILWETAIKEVP-SSVGCLTNLKVLSLSQC 551 (714)
Q Consensus 474 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~ 551 (714)
++|++|++++|..... |..+. .++ ...++|++|++++|.+..++ ..++.+++|++|++++|
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~----------------~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLA----------------ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHH----------------HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSC
T ss_pred CCccEEEccCCCCcch-hHHHH----------------HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCC
Confidence 8888888877654332 32221 000 01246677777777787776 56888999999999998
Q ss_pred CCCcc--ccccc--cCCCCCCEEEecCCCCCC--CCc-hhhhccccccccccCCccccccCccccCCCCCcccCCCccCC
Q 042374 552 PRLKR--ISTSI--LKLKSLQNLYLIQCFDLE--NFP-EILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVAD 624 (714)
Q Consensus 552 ~~~~~--~~~~~--~~l~~L~~L~l~~~~~~~--~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 624 (714)
.+.+. .+..+ ..+++|++|++++|.+.. .++ ..+..+++|++|++++|.+...+.. ..+..
T Consensus 184 ~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~~~~~ 251 (312)
T 1wwl_A 184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA------------PSCDW 251 (312)
T ss_dssp TTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC------------SCCCC
T ss_pred CcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch------------hhhhh
Confidence 87654 33344 788899999999887652 222 3345678899999998888764411 11444
Q ss_pred CCCCCceeccCCCcCcCC--CCCCCCEEECCCCCCcccchhhccCCCCCeeccccCccc
Q 042374 625 TNDLEGLSLYLRNYALNG--CLSSLEYLDLSGNDFESLPASIKQLSRLRKLHLCYCDKL 681 (714)
Q Consensus 625 ~~~L~~L~l~~~~~~~~~--~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~~~~~ 681 (714)
+++|+.|++++|.+..+. -.++|++|+|++|+++.+|. +..+++|++|++++|++.
T Consensus 252 l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CTTCCEEECTTSCCSSCCSSCCSEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred cCCCCEEECCCCccChhhhhccCCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCC
Confidence 566666666666665421 11466666666666666655 666666666666666543
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=5.3e-19 Score=176.42 Aligned_cols=116 Identities=20% Similarity=0.167 Sum_probs=72.7
Q ss_pred cCCCCCCcEEecCCCCCCc-cccccccCCCCCCEEEecCCCCCCCCchhhhcccccc----ccccCCccccccCccccCC
Q 042374 537 VGCLTNLKVLSLSQCPRLK-RISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLN----YNALGRTKIRELPSTFEKG 611 (714)
Q Consensus 537 ~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~----~L~l~~~~l~~~~~~~~~~ 611 (714)
++.+++|++|++++|.+.. .+|..+..+++|++|++++|.+....+..+..+++|+ .|++++|.+..++...
T Consensus 120 ~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~--- 196 (276)
T 2z62_A 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA--- 196 (276)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTS---
T ss_pred cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccc---
Confidence 5666677777777766544 2466666677777777777665554445555555555 5666666665554432
Q ss_pred CCCcccCCCccCCCCCCCceeccCCCcCcCCCCCCCCEEECCCCCCcccchh-hccCCCCCeeccccCccccccC
Q 042374 612 EGTESQLPSSVADTNDLEGLSLYLRNYALNGCLSSLEYLDLSGNDFESLPAS-IKQLSRLRKLHLCYCDKLQSIP 685 (714)
Q Consensus 612 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~l~~~~~~~~lp 685 (714)
....+|+.|++++|+++.+|.. +..+++|++|++++|++....|
T Consensus 197 ------------------------------~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 197 ------------------------------FKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp ------------------------------SCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ------------------------------cCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 1123577777777777777654 4667778888887777665544
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.81 E-value=1.4e-21 Score=198.53 Aligned_cols=240 Identities=20% Similarity=0.180 Sum_probs=182.9
Q ss_pred cccccEEeccCCccccccC-CCCCCCCCcEEecCCCCC-CccCCcccc-------CCCCCCEEecCCCCCCCccCCCCCC
Q 042374 426 LLSSKFIDLSHSQYLIRMP-DLSEAPNLERINLLNCTN-LVSVPSSIQ-------NFNHLSMLCFEGCKSLRSFPSNLHF 496 (714)
Q Consensus 426 ~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~-~~~lp~~~~-------~l~~L~~L~l~~~~~~~~~~~~~~~ 496 (714)
..+|+.+++++|.+ ..| .+... |++|++++|.. ...+|..+. ++++|++|++++|.....+|..+.
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~- 116 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL- 116 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS-
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH-
Confidence 67788899999987 444 23332 88888888765 234565555 789999999999876666666431
Q ss_pred CCCcEEEeCCCcCCCcccccccccceEecccccceEeccccCCC-----CCCcEEecCCCCCCccccccccCCCCCCEEE
Q 042374 497 VCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSSVGCL-----TNLKVLSLSQCPRLKRISTSILKLKSLQNLY 571 (714)
Q Consensus 497 ~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 571 (714)
.....+|++|++++|.+..+|..++.+ ++|++|++++|.+.+..|..++.+++|++|+
T Consensus 117 -----------------~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 179 (312)
T 1wwl_A 117 -----------------EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD 179 (312)
T ss_dssp -----------------SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEE
T ss_pred -----------------HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEE
Confidence 012234566666667777777666665 8999999999998877778999999999999
Q ss_pred ecCCCCCCC--Cchhh--hccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc------C
Q 042374 572 LIQCFDLEN--FPEIL--EKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL------N 641 (714)
Q Consensus 572 l~~~~~~~~--~~~~l--~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~------~ 641 (714)
+++|.+.+. ++..+ +.+++|++|++++|.++.++... ...+..+++|+.|++++|.+.. +
T Consensus 180 Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 249 (312)
T 1wwl_A 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC----------SALAAARVQLQGLDLSHNSLRDAAGAPSC 249 (312)
T ss_dssp CCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHH----------HHHHHTTCCCSEEECTTSCCCSSCCCSCC
T ss_pred CCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHH----------HHHHhcCCCCCEEECCCCcCCcccchhhh
Confidence 999986643 34444 88999999999999998443210 0115678999999999999876 3
Q ss_pred CCCCCCCEEECCCCCCcccchhhccCCCCCeeccccCccccccCC--CcCcccEeecccCc
Q 042374 642 GCLSSLEYLDLSGNDFESLPASIKQLSRLRKLHLCYCDKLQSIPE--LPLSLKWLDASNCE 700 (714)
Q Consensus 642 ~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~--~~~~L~~L~l~~c~ 700 (714)
..+++|++|+|++|+++.+|.++. ++|++|++++|++.+. |. .+++|+.|++++|+
T Consensus 250 ~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCT
T ss_pred hhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCC
Confidence 346899999999999999998876 8999999999986543 64 35789999999985
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=1.1e-18 Score=174.77 Aligned_cols=196 Identities=18% Similarity=0.138 Sum_probs=117.6
Q ss_pred cccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEeC
Q 042374 426 LLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINCG 505 (714)
Q Consensus 426 ~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 505 (714)
+++++.++++++.+....+.+. +++++|++++|......+..+..+++|++|++++|.. +.++...
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~----------- 74 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVDG----------- 74 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECCS-----------
T ss_pred cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-CcccCCC-----------
Confidence 3444555555544433322222 4555666665554433345556666666666665432 2211111
Q ss_pred CCcCCCcccccccccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhh
Q 042374 506 GCVNLTEFPQISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEIL 585 (714)
Q Consensus 506 ~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 585 (714)
..++|++|++++|.+..+|..+..+++|++|++++|.+....+..+.++++|++|++++|.+....+..+
T Consensus 75 ----------~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 144 (290)
T 1p9a_G 75 ----------TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144 (290)
T ss_dssp ----------CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred ----------CCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhc
Confidence 1223444445556666677777788888888888887766555678888888888888887766555667
Q ss_pred hccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc----CCCCCCCCEEECCCCCCc
Q 042374 586 EKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL----NGCLSSLEYLDLSGNDFE 658 (714)
Q Consensus 586 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~----~~~l~~L~~L~L~~n~l~ 658 (714)
..+++|+.|++++|.++.+|..+ +..+++|+.|++++|.+.. +..+++|+.|+|++|.+.
T Consensus 145 ~~l~~L~~L~L~~N~l~~l~~~~-------------~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 145 TPTPKLEKLSLANNNLTELPAGL-------------LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTCTTCCEEECTTSCCSCCCTTT-------------TTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccccCCCEEECCCCcCCccCHHH-------------hcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 77888888888888887777654 4556666666666665544 223445666666655543
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=2.9e-19 Score=177.59 Aligned_cols=221 Identities=20% Similarity=0.198 Sum_probs=115.5
Q ss_pred CcccccCCCCCCccccCCcccccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCC
Q 042374 406 NLTELSLPYSKVEQSWGGKRLLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCK 485 (714)
Q Consensus 406 ~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 485 (714)
.+..+.+..+.+........+++|+.|++++|.+. ..+.+..+++|++|++++|... .+ ..+..+++|++|++++|.
T Consensus 20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~l~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~L~~n~ 96 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQGIQYLPNVRYLALGGNKLH-DI-SALKELTNLTYLILTGNQ 96 (272)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCC-CCTTGGGCTTCCEEECTTSCCC-CC-GGGTTCTTCCEEECTTSC
T ss_pred HHHHHHhcCcccccccccccccceeeeeeCCCCcc-cccccccCCCCcEEECCCCCCC-Cc-hhhcCCCCCCEEECCCCc
Confidence 44455666666665555445777777777777643 3445667777777777776533 33 356777777777777653
Q ss_pred CCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCC
Q 042374 486 SLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLK 565 (714)
Q Consensus 486 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 565 (714)
.. .++. ..+..+++|++|++++|.+.+..+..+..++
T Consensus 97 l~-~~~~------------------------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 133 (272)
T 3rfs_A 97 LQ-SLPN------------------------------------------GVFDKLTNLKELVLVENQLQSLPDGVFDKLT 133 (272)
T ss_dssp CC-CCCT------------------------------------------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred cC-ccCh------------------------------------------hHhcCCcCCCEEECCCCcCCccCHHHhccCC
Confidence 22 1111 1134444445555544444333333344444
Q ss_pred CCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc-----
Q 042374 566 SLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL----- 640 (714)
Q Consensus 566 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~----- 640 (714)
+|++|++++|.+....+..++.+++|++|++++|.++.++... +..+++|+.|++++|.+..
T Consensus 134 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------------~~~l~~L~~L~L~~N~l~~~~~~~ 200 (272)
T 3rfs_A 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV-------------FDKLTQLKDLRLYQNQLKSVPDGV 200 (272)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-------------TTTCTTCCEEECCSSCCSCCCTTT
T ss_pred CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH-------------hcCCccCCEEECCCCcCCccCHHH
Confidence 5555555444443333333444445555555555444433321 3334444444444443332
Q ss_pred CCCCCCCCEEECCCCCCcccchhhccCCCCCeeccccCccccccCCCcCcc
Q 042374 641 NGCLSSLEYLDLSGNDFESLPASIKQLSRLRKLHLCYCDKLQSIPELPLSL 691 (714)
Q Consensus 641 ~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~~~~L 691 (714)
++.+++|+.|++++|.+. ..+++|+.|+++.|.+.+.+|....++
T Consensus 201 ~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 201 FDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp TTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred HhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCccccc
Confidence 234555666666665443 234566666666666666666544443
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.80 E-value=2.6e-18 Score=170.57 Aligned_cols=113 Identities=20% Similarity=0.177 Sum_probs=65.8
Q ss_pred cCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcc
Q 042374 537 VGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTES 616 (714)
Q Consensus 537 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 616 (714)
+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.++.++...
T Consensus 105 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------- 176 (270)
T 2o6q_A 105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGA-------- 176 (270)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT--------
T ss_pred cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhH--------
Confidence 456666777777666655555555666666666666666555433344566666666666666665554332
Q ss_pred cCCCccCCCCCCCceeccCCCcCcCCCCCCCCEEECCCCCCcccch-hhccCCCCCeeccccCccc
Q 042374 617 QLPSSVADTNDLEGLSLYLRNYALNGCLSSLEYLDLSGNDFESLPA-SIKQLSRLRKLHLCYCDKL 681 (714)
Q Consensus 617 ~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~~~~~ 681 (714)
+.. +++|+.|+|++|+++.+|. .+..+++|+.|++++|++.
T Consensus 177 -----~~~-------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 177 -----FDK-------------------LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp -----TTT-------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -----hcc-------------------CCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 333 4555566666666655554 2455666666666666543
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.79 E-value=2.2e-19 Score=178.46 Aligned_cols=210 Identities=17% Similarity=0.134 Sum_probs=145.9
Q ss_pred CCCCcccccCCCCCCccccCCcccccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecC
Q 042374 403 EPENLTELSLPYSKVEQSWGGKRLLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFE 482 (714)
Q Consensus 403 ~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~ 482 (714)
.+.+|+.|++++|.+..+.....+++|++|++++|.+.. .+.+..+++|++|++++|......+..++.+++|++|+++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 456778888888888777665568888888888888655 4568888999999999887655445567888899999988
Q ss_pred CCCCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEeccccCCCCCCcEEecCCCCCCcccccccc
Q 042374 483 GCKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSIL 562 (714)
Q Consensus 483 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 562 (714)
+|... .++ +..++.+++|++|++++|.+.+..+..+.
T Consensus 118 ~n~l~-~~~------------------------------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 154 (272)
T 3rfs_A 118 ENQLQ-SLP------------------------------------------DGVFDKLTNLTYLNLAHNQLQSLPKGVFD 154 (272)
T ss_dssp TSCCC-CCC------------------------------------------TTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCcCC-ccC------------------------------------------HHHhccCCCCCEEECCCCccCccCHHHhc
Confidence 86432 111 12245666677777777665544444456
Q ss_pred CCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCcCC
Q 042374 563 KLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYALNG 642 (714)
Q Consensus 563 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 642 (714)
.+++|++|++++|.+....+..++.+++|++|++++|.++.++... +..+++|+.|++++|.+. +
T Consensus 155 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-------------~~~l~~L~~L~l~~N~~~--~ 219 (272)
T 3rfs_A 155 KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV-------------FDRLTSLQYIWLHDNPWD--C 219 (272)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT-------------TTTCTTCCEEECCSSCBC--C
T ss_pred cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHH-------------HhCCcCCCEEEccCCCcc--c
Confidence 6777777777777665544455667777777777777776655433 566777777777777654 4
Q ss_pred CCCCCCEEECCCCCCc-ccchhhccCCCCC
Q 042374 643 CLSSLEYLDLSGNDFE-SLPASIKQLSRLR 671 (714)
Q Consensus 643 ~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~ 671 (714)
.+++|+.|+++.|.++ .+|.+++.++...
T Consensus 220 ~~~~l~~l~~~~n~~~g~ip~~~~~~~~~~ 249 (272)
T 3rfs_A 220 TCPGIRYLSEWINKHSGVVRNSAGSVAPDS 249 (272)
T ss_dssp CTTTTHHHHHHHHHTGGGBBCTTSCBCGGG
T ss_pred cCcHHHHHHHHHHhCCCcccCcccccCCCC
Confidence 4677888888888777 7888877665543
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.79 E-value=3.5e-18 Score=170.48 Aligned_cols=203 Identities=22% Similarity=0.202 Sum_probs=143.6
Q ss_pred ccccEEeccCCccccccC-CCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEeC
Q 042374 427 LSSKFIDLSHSQYLIRMP-DLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINCG 505 (714)
Q Consensus 427 ~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 505 (714)
++|++|++++|.+....+ .|.++++|++|++++|......+..+..+++|++|++++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n--------------------- 86 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN--------------------- 86 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC---------------------
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC---------------------
Confidence 456666666666555444 4666777777777776544333445666777777777664
Q ss_pred CCcCCCcccccccccceEecccccceEec-cccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCC-CCch
Q 042374 506 GCVNLTEFPQISGSVTKLILWETAIKEVP-SSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLE-NFPE 583 (714)
Q Consensus 506 ~~~~l~~~~~~~~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~ 583 (714)
.+..++ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.. .+|.
T Consensus 87 -----------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~ 143 (276)
T 2z62_A 87 -----------------------PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143 (276)
T ss_dssp -----------------------CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred -----------------------ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCch
Confidence 333443 457888899999999988766656578889999999999988765 3688
Q ss_pred hhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCcCCCCCCCCEEECCCCCCcccchh
Q 042374 584 ILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYALNGCLSSLEYLDLSGNDFESLPAS 663 (714)
Q Consensus 584 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~ 663 (714)
.+..+++|++|++++|.++.++... +..+.+|+.|.+ .|++++|.++.+|..
T Consensus 144 ~~~~l~~L~~L~Ls~N~l~~~~~~~-------------~~~l~~L~~l~l---------------~L~ls~n~l~~~~~~ 195 (276)
T 2z62_A 144 YFSNLTNLEHLDLSSNKIQSIYCTD-------------LRVLHQMPLLNL---------------SLDLSLNPMNFIQPG 195 (276)
T ss_dssp GGGGCTTCCEEECCSSCCCEECGGG-------------GHHHHTCTTCCE---------------EEECCSSCCCEECTT
T ss_pred hhccCCCCCEEECCCCCCCcCCHHH-------------hhhhhhccccce---------------eeecCCCcccccCcc
Confidence 8889999999999999887765432 333333332211 789999999998887
Q ss_pred hccCCCCCeeccccCccccccCC---CcCcccEeecccCcc
Q 042374 664 IKQLSRLRKLHLCYCDKLQSIPE---LPLSLKWLDASNCER 701 (714)
Q Consensus 664 l~~l~~L~~L~l~~~~~~~~lp~---~~~~L~~L~l~~c~~ 701 (714)
.....+|++|++++|.+.+..+. .+++|+.|++++|+.
T Consensus 196 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 196 AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp SSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred ccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 77777999999999986543333 357899999996643
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=1.6e-18 Score=175.32 Aligned_cols=209 Identities=17% Similarity=0.173 Sum_probs=118.7
Q ss_pred cccccCCCCCCccccCCcccccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCC
Q 042374 407 LTELSLPYSKVEQSWGGKRLLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKS 486 (714)
Q Consensus 407 L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~ 486 (714)
+..+.+..+.+.+......+++|++|++++|.+.. .+.+..+++|++|++++|.. ..++. +..+++|++|++++|..
T Consensus 21 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-l~~~~~l~~L~~L~L~~n~i-~~~~~-~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 21 AIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTT-IEGVQYLNNLIGLELKDNQI-TDLAP-LKNLTKITELELSGNPL 97 (308)
T ss_dssp HHHHHTTCSSTTSEECHHHHHTCCEEECTTSCCCC-CTTGGGCTTCCEEECCSSCC-CCCGG-GTTCCSCCEEECCSCCC
T ss_pred HHHHHhCCCCcCceecHHHcCCcCEEEeeCCCccC-chhhhccCCCCEEEccCCcC-CCChh-HccCCCCCEEEccCCcC
Confidence 34445556666655544457788888888887544 45677788888888888753 34444 77888888888877642
Q ss_pred CCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCC
Q 042374 487 LRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKS 566 (714)
Q Consensus 487 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 566 (714)
+.++....+ .+|++|++++|.+..++. +..+++|++|++++|.+....+ +..+++
T Consensus 98 -~~~~~~~~l---------------------~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~ 152 (308)
T 1h6u_A 98 -KNVSAIAGL---------------------QSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTN 152 (308)
T ss_dssp -SCCGGGTTC---------------------TTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTT
T ss_pred -CCchhhcCC---------------------CCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCC
Confidence 222211111 233334444444444443 5556666666666665433222 555666
Q ss_pred CCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCcCCCCCC
Q 042374 567 LQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYALNGCLSS 646 (714)
Q Consensus 567 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~ 646 (714)
|+.|++++|.+.. ++. +..+++|+.|++++|.++.++. + ..+++
T Consensus 153 L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~---------------l-------------------~~l~~ 196 (308)
T 1h6u_A 153 LQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP---------------L-------------------ASLPN 196 (308)
T ss_dssp CCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG---------------G-------------------GGCTT
T ss_pred ccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh---------------h-------------------cCCCC
Confidence 6666666655433 222 5555666666666655544332 2 33555
Q ss_pred CCEEECCCCCCcccchhhccCCCCCeeccccCcc
Q 042374 647 LEYLDLSGNDFESLPASIKQLSRLRKLHLCYCDK 680 (714)
Q Consensus 647 L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~~~~ 680 (714)
|+.|+|++|+++.++. +..+++|+.|++++|++
T Consensus 197 L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 197 LIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEE
T ss_pred CCEEEccCCccCcccc-ccCCCCCCEEEccCCee
Confidence 6666666666665553 55566666666666654
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.77 E-value=1e-17 Score=167.62 Aligned_cols=196 Identities=15% Similarity=0.050 Sum_probs=129.5
Q ss_pred CcccccCCCCCCccccCCcccccccEEeccCCccccccC-CCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCC
Q 042374 406 NLTELSLPYSKVEQSWGGKRLLSSKFIDLSHSQYLIRMP-DLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGC 484 (714)
Q Consensus 406 ~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~ 484 (714)
++++++++++.++.++... .++++.|++++|.+....+ .|..+++|++|++++|.. ..++.. +.+++|++|++++|
T Consensus 11 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~-~~l~~L~~L~Ls~N 87 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD-GTLPVLGTLDLSHN 87 (290)
T ss_dssp TCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECC-SCCTTCCEEECCSS
T ss_pred CccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-CcccCC-CCCCcCCEEECCCC
Confidence 4444455555554444322 2455555555555544433 355666666666666543 233322 55666666666664
Q ss_pred CCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEecc-ccCCCCCCcEEecCCCCCCccccccccC
Q 042374 485 KSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPS-SVGCLTNLKVLSLSQCPRLKRISTSILK 563 (714)
Q Consensus 485 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 563 (714)
.. ..+|..+ ...++|++|++++|.++.+|. .+..+++|++|++++|.+....+..+..
T Consensus 88 ~l-~~l~~~~--------------------~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 146 (290)
T 1p9a_G 88 QL-QSLPLLG--------------------QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146 (290)
T ss_dssp CC-SSCCCCT--------------------TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred cC-CcCchhh--------------------ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccc
Confidence 32 2333322 112234445555566666764 4899999999999999887666666889
Q ss_pred CCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcC
Q 042374 564 LKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYA 639 (714)
Q Consensus 564 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 639 (714)
+++|+.|++++|.+....+..+..+++|++|++++|.++.+|.. +..+.+|+.|++.+|.+.
T Consensus 147 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~--------------~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG--------------FFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT--------------TTTTCCCSEEECCSCCBC
T ss_pred ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChh--------------hcccccCCeEEeCCCCcc
Confidence 99999999999987765555678899999999999999888776 556779999999999864
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=1.8e-17 Score=164.47 Aligned_cols=104 Identities=22% Similarity=0.186 Sum_probs=71.5
Q ss_pred ceEecccccceEeccc-cCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCc
Q 042374 521 TKLILWETAIKEVPSS-VGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRT 599 (714)
Q Consensus 521 ~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 599 (714)
++|++++|.+..+|.. +..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+.++++|++|++++|
T Consensus 112 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC
Confidence 3333333445555443 678888888888888766555555788888999998888776655566888889999999998
Q ss_pred cccccCccccCCCCCcccCCCccCCCCCCCceeccCCC
Q 042374 600 KIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRN 637 (714)
Q Consensus 600 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 637 (714)
.++.+|... +..+++|+.|++++|.
T Consensus 192 ~l~~~~~~~-------------~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 192 QLKRVPEGA-------------FDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCSCCCTTT-------------TTTCTTCCEEECCSSC
T ss_pred cCCcCCHHH-------------hccccCCCEEEecCCC
Confidence 888776543 4445555555555544
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=2.9e-18 Score=167.00 Aligned_cols=196 Identities=15% Similarity=0.095 Sum_probs=106.0
Q ss_pred ccccEEeccCCccccccC-CCCCCCCCcEEecCCCCCCccCC-ccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEe
Q 042374 427 LSSKFIDLSHSQYLIRMP-DLSEAPNLERINLLNCTNLVSVP-SSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINC 504 (714)
Q Consensus 427 ~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 504 (714)
.+|++|++++|.+....+ .|..+++|++|++++|..+..++ ..+..+++|++|++++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~-------------------- 90 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT-------------------- 90 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEE--------------------
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCC--------------------
Confidence 345555555555544444 35556666666666654233333 34555555655555542
Q ss_pred CCCcCCCcccccccccceEecccccceEecc-ccCCCCCCcEEecCCCCCCccccccccCCCCCC---EEEecCC-CCCC
Q 042374 505 GGCVNLTEFPQISGSVTKLILWETAIKEVPS-SVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQ---NLYLIQC-FDLE 579 (714)
Q Consensus 505 ~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~ 579 (714)
|.++.+|. .+..+++|++|++++|.+.+ +|. +..+++|+ +|++++| .+..
T Consensus 91 -----------------------n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~ 145 (239)
T 2xwt_C 91 -----------------------RNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTS 145 (239)
T ss_dssp -----------------------TTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCE
T ss_pred -----------------------CCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhh
Confidence 22333332 35566667777776665433 454 55666666 6777666 4433
Q ss_pred CCchhhhcccccc-ccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCcCCCCCCCCEEECCCCC-C
Q 042374 580 NFPEILEKMEYLN-YNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYALNGCLSSLEYLDLSGND-F 657 (714)
Q Consensus 580 ~~~~~l~~l~~L~-~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~L~~L~L~~n~-l 657 (714)
..+..+..+++|+ +|++++|.++.+|... +. .++|+.|++++|. +
T Consensus 146 i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~-------------~~--------------------~~~L~~L~L~~n~~l 192 (239)
T 2xwt_C 146 IPVNAFQGLCNETLTLKLYNNGFTSVQGYA-------------FN--------------------GTKLDAVYLNKNKYL 192 (239)
T ss_dssp ECTTTTTTTBSSEEEEECCSCCCCEECTTT-------------TT--------------------TCEEEEEECTTCTTC
T ss_pred cCcccccchhcceeEEEcCCCCCcccCHhh-------------cC--------------------CCCCCEEEcCCCCCc
Confidence 3334466677777 7777777666655432 11 1345555565553 6
Q ss_pred cccch-hhccC-CCCCeeccccCccccccC-CCcCcccEeecccCcc
Q 042374 658 ESLPA-SIKQL-SRLRKLHLCYCDKLQSIP-ELPLSLKWLDASNCER 701 (714)
Q Consensus 658 ~~lp~-~l~~l-~~L~~L~l~~~~~~~~lp-~~~~~L~~L~l~~c~~ 701 (714)
+.+|. .+.++ ++|++|++++|++. .+| ..+++|+.|+++++..
T Consensus 193 ~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 193 TVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNTWT 238 (239)
T ss_dssp CEECTTTTTTCSBCCSEEECTTCCCC-CCCCTTCTTCSEEECTTC--
T ss_pred ccCCHHHhhccccCCcEEECCCCccc-cCChhHhccCceeeccCccC
Confidence 55543 35555 66666666666543 333 2456666666666543
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=5.5e-18 Score=171.45 Aligned_cols=192 Identities=18% Similarity=0.171 Sum_probs=135.4
Q ss_pred CCCCcccccCCCCCCccccCCcccccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecC
Q 042374 403 EPENLTELSLPYSKVEQSWGGKRLLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFE 482 (714)
Q Consensus 403 ~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~ 482 (714)
.+++|++|++++|.+..++....+++|++|++++|.+....+ +..+++|++|++++|.. ..++ .+..+++|++|+++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l-~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL-KNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC-SCCG-GGTTCTTCCEEECT
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcC-CCch-hhcCCCCCCEEECC
Confidence 345677777777777666544447777777887777665544 77778888888887753 3443 57778888888887
Q ss_pred CCCCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEeccccCCCCCCcEEecCCCCCCcccccccc
Q 042374 483 GCKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSIL 562 (714)
Q Consensus 483 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 562 (714)
+|.. ..++....+ ++|++|++++|.+..++. +..+++|++|++++|.+.. ++. +.
T Consensus 116 ~n~l-~~~~~l~~l---------------------~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~ 170 (308)
T 1h6u_A 116 STQI-TDVTPLAGL---------------------SNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-LTP-LA 170 (308)
T ss_dssp TSCC-CCCGGGTTC---------------------TTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GT
T ss_pred CCCC-CCchhhcCC---------------------CCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-Chh-hc
Confidence 7643 222221112 345555555566776665 8889999999999998755 443 88
Q ss_pred CCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcC
Q 042374 563 KLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYA 639 (714)
Q Consensus 563 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 639 (714)
.+++|+.|++++|.+.. ++. +..+++|++|++++|.+..++. +..+++|+.|++++|.+.
T Consensus 171 ~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~~~---------------l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVSP---------------LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp TCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBCGG---------------GTTCTTCCEEEEEEEEEE
T ss_pred CCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCcccc---------------ccCCCCCCEEEccCCeee
Confidence 99999999999998765 443 8899999999999999876652 556666666666666554
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.74 E-value=2.3e-18 Score=174.70 Aligned_cols=198 Identities=18% Similarity=0.108 Sum_probs=112.7
Q ss_pred cccccEEeccCCccccccCC-C--CCCCCCcEEecCCCCCCccCC----ccccCCCCCCEEecCCCCCCCccCCCCCCCC
Q 042374 426 LLSSKFIDLSHSQYLIRMPD-L--SEAPNLERINLLNCTNLVSVP----SSIQNFNHLSMLCFEGCKSLRSFPSNLHFVC 498 (714)
Q Consensus 426 ~~~L~~L~l~~~~~~~~~~~-~--~~l~~L~~L~L~~~~~~~~lp----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 498 (714)
+++|++|++++|.+....|. + ..+++|++|++++|......+ ..+..+++|++|++++|
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-------------- 155 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-------------- 155 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC--------------
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC--------------
Confidence 44566666666665554442 3 556666666666655443222 22334555555555543
Q ss_pred CcEEEeCCCcCCCcccccccccceEecccccceEec-cccCCCCCCcEEecCCCCCCcc--cc--ccccCCCCCCEEEec
Q 042374 499 PVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVP-SSVGCLTNLKVLSLSQCPRLKR--IS--TSILKLKSLQNLYLI 573 (714)
Q Consensus 499 L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~--~~--~~~~~l~~L~~L~l~ 573 (714)
.+..++ ..++.+++|++|++++|.+.+. ++ ..+..+++|++|+++
T Consensus 156 ------------------------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls 205 (310)
T 4glp_A 156 ------------------------------HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR 205 (310)
T ss_dssp ------------------------------SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC
T ss_pred ------------------------------CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC
Confidence 344333 4467788888888888876542 22 234678888888888
Q ss_pred CCCCCCCCch----hhhccccccccccCCcccccc-CccccCCCCCcccCCCccCCCCCCCceeccCCCcCcCC--CCCC
Q 042374 574 QCFDLENFPE----ILEKMEYLNYNALGRTKIREL-PSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYALNG--CLSS 646 (714)
Q Consensus 574 ~~~~~~~~~~----~l~~l~~L~~L~l~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~l~~ 646 (714)
+|.+. .++. .++.+++|++|++++|.+... |..+. .+..+++|++|++++|.+..+. -.++
T Consensus 206 ~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~-----------~~~~~~~L~~L~Ls~N~l~~lp~~~~~~ 273 (310)
T 4glp_A 206 NTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP-----------RCMWSSALNSLNLSFAGLEQVPKGLPAK 273 (310)
T ss_dssp SSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS-----------SCCCCTTCCCEECCSSCCCSCCSCCCSC
T ss_pred CCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH-----------hccCcCcCCEEECCCCCCCchhhhhcCC
Confidence 88764 3333 256778888888888888765 43310 0111245555555555554411 1245
Q ss_pred CCEEECCCCCCcccchhhccCCCCCeeccccCcc
Q 042374 647 LEYLDLSGNDFESLPASIKQLSRLRKLHLCYCDK 680 (714)
Q Consensus 647 L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~~~~ 680 (714)
|+.|+|++|+++.+|. +..+++|+.|++++|++
T Consensus 274 L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 274 LRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred CCEEECCCCcCCCCch-hhhCCCccEEECcCCCC
Confidence 6666666666665543 45556666666666554
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=1.3e-17 Score=162.24 Aligned_cols=137 Identities=17% Similarity=0.115 Sum_probs=86.8
Q ss_pred cCCCCCCcEEecCC-CCCCccccccccCCCCCCEEEecCCCCCCCCchhhhcccccc---ccccCCc-cccccCccccCC
Q 042374 537 VGCLTNLKVLSLSQ-CPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLN---YNALGRT-KIRELPSTFEKG 611 (714)
Q Consensus 537 ~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~l~~~~~~~~~~ 611 (714)
+..+++|++|++++ |.+....+..+.++++|++|++++|.+.. +|. +..+++|+ +|++++| .++.+|...
T Consensus 76 f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~--- 150 (239)
T 2xwt_C 76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNA--- 150 (239)
T ss_dssp EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTT---
T ss_pred cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCccc---
Confidence 45555555555555 44433333445555555555555554433 333 44444444 5555555 444443321
Q ss_pred CCCcccCCCccCCCCCCCceeccCCCcCcCCCCCCCC-EEECCCCCCcccchhhccCCCCCeeccccCccccccCC----
Q 042374 612 EGTESQLPSSVADTNDLEGLSLYLRNYALNGCLSSLE-YLDLSGNDFESLPASIKQLSRLRKLHLCYCDKLQSIPE---- 686 (714)
Q Consensus 612 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~L~-~L~L~~n~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~---- 686 (714)
+..+++|+ .|++++|+++.+|......++|++|++++|+.++.+|.
T Consensus 151 -----------------------------~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~ 201 (239)
T 2xwt_C 151 -----------------------------FQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFG 201 (239)
T ss_dssp -----------------------------TTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTT
T ss_pred -----------------------------ccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhh
Confidence 45577888 99999999999988655558999999999974556653
Q ss_pred Cc-CcccEeecccCcccccccCc
Q 042374 687 LP-LSLKWLDASNCERLQTFPEI 708 (714)
Q Consensus 687 ~~-~~L~~L~l~~c~~l~~lp~~ 708 (714)
.. ++|+.|++++| .++.+|..
T Consensus 202 ~l~~~L~~L~l~~N-~l~~l~~~ 223 (239)
T 2xwt_C 202 GVYSGPSLLDVSQT-SVTALPSK 223 (239)
T ss_dssp TCSBCCSEEECTTC-CCCCCCCT
T ss_pred ccccCCcEEECCCC-ccccCChh
Confidence 24 78999999997 57788754
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.73 E-value=5.2e-18 Score=172.13 Aligned_cols=201 Identities=18% Similarity=0.094 Sum_probs=150.6
Q ss_pred CCCCcEEecCCCCCCccCCccc--cCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecc
Q 042374 449 APNLERINLLNCTNLVSVPSSI--QNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILW 526 (714)
Q Consensus 449 l~~L~~L~L~~~~~~~~lp~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~ 526 (714)
+++|++|++++|......|..+ ..+++|++|++++|......+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~----------------------------------- 134 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRS----------------------------------- 134 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTS-----------------------------------
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhh-----------------------------------
Confidence 3457777777776555666655 666777777776654321111
Q ss_pred cccceEec-cccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCC--Cc--hhhhccccccccccCCccc
Q 042374 527 ETAIKEVP-SSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLEN--FP--EILEKMEYLNYNALGRTKI 601 (714)
Q Consensus 527 ~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~--~~l~~l~~L~~L~l~~~~l 601 (714)
.++ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+. ++ ..++.+++|++|++++|.+
T Consensus 135 -----~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 209 (310)
T 4glp_A 135 -----WLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM 209 (310)
T ss_dssp -----SHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC
T ss_pred -----hhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC
Confidence 011 2245788999999999998877788899999999999999986532 22 2347889999999999999
Q ss_pred cccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCcC-----CCC---CCCCEEECCCCCCcccchhhccCCCCCee
Q 042374 602 RELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYALN-----GCL---SSLEYLDLSGNDFESLPASIKQLSRLRKL 673 (714)
Q Consensus 602 ~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-----~~l---~~L~~L~L~~n~l~~lp~~l~~l~~L~~L 673 (714)
+.++... ...+..+++|++|+|++|.+... +.+ ++|++|+|++|+++.+|..+. ++|++|
T Consensus 210 ~~l~~~~----------~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L 277 (310)
T 4glp_A 210 ETPTGVC----------AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVL 277 (310)
T ss_dssp CCHHHHH----------HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCE
T ss_pred CchHHHH----------HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEE
Confidence 7655420 00156789999999999998763 333 799999999999999998774 899999
Q ss_pred ccccCcccc-ccCCCcCcccEeecccCcc
Q 042374 674 HLCYCDKLQ-SIPELPLSLKWLDASNCER 701 (714)
Q Consensus 674 ~l~~~~~~~-~lp~~~~~L~~L~l~~c~~ 701 (714)
++++|++.+ ..+..+++|+.|++++|+.
T Consensus 278 ~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 278 DLSSNRLNRAPQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp ECCSCCCCSCCCTTSCCCCSCEECSSTTT
T ss_pred ECCCCcCCCCchhhhCCCccEEECcCCCC
Confidence 999999775 3455678999999999863
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.72 E-value=1.5e-18 Score=178.79 Aligned_cols=226 Identities=15% Similarity=0.149 Sum_probs=133.7
Q ss_pred ccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCcc-CCccccCCCCCCEEecCCCCCCCccCCCCC-CCCCcEEEe
Q 042374 427 LSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVS-VPSSIQNFNHLSMLCFEGCKSLRSFPSNLH-FVCPVTINC 504 (714)
Q Consensus 427 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l 504 (714)
++++.|++++|.+....+.+..+++|++|++++|..... +|..+..+++|++|++++|......+..+. +++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 666777777776666666666677777777777654333 555666777777777777643322222221 333333333
Q ss_pred CCCcCCCcccccccccceEecccccce--EeccccCCCCCCcEEecCCC-CCCcc-ccccccCCC-CCCEEEecCCC--C
Q 042374 505 GGCVNLTEFPQISGSVTKLILWETAIK--EVPSSVGCLTNLKVLSLSQC-PRLKR-ISTSILKLK-SLQNLYLIQCF--D 577 (714)
Q Consensus 505 ~~~~~l~~~~~~~~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~-~L~~L~l~~~~--~ 577 (714)
++|. .++ .++..+..+++|++|++++| .+... ++..+..++ +|++|++++|. +
T Consensus 150 ~~~~--------------------~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~ 209 (336)
T 2ast_B 150 SGCS--------------------GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL 209 (336)
T ss_dssp TTCB--------------------SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGS
T ss_pred CCCC--------------------CCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccC
Confidence 3322 222 23444666778888888888 55443 566677788 88888888873 3
Q ss_pred C-CCCchhhhccccccccccCCcc-ccccCccccCCCCCcccCCCccCCCCCCCceeccCCC-cCc-----CCCCCCCCE
Q 042374 578 L-ENFPEILEKMEYLNYNALGRTK-IRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRN-YAL-----NGCLSSLEY 649 (714)
Q Consensus 578 ~-~~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~-----~~~l~~L~~ 649 (714)
. ..++..+..+++|++|++++|. ++.. .+..+..+++|+.|++++|. +.. ++.+++|+.
T Consensus 210 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-------------~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 276 (336)
T 2ast_B 210 QKSDLSTLVRRCPNLVHLDLSDSVMLKND-------------CFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 276 (336)
T ss_dssp CHHHHHHHHHHCTTCSEEECTTCTTCCGG-------------GGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred CHHHHHHHHhhCCCCCEEeCCCCCcCCHH-------------HHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCE
Confidence 3 3456667778888888888876 4321 11125666777777777773 322 455777777
Q ss_pred EECCCCCCcccchhhccC-CCCCeeccccCccccccCCCc
Q 042374 650 LDLSGNDFESLPASIKQL-SRLRKLHLCYCDKLQSIPELP 688 (714)
Q Consensus 650 L~L~~n~l~~lp~~l~~l-~~L~~L~l~~~~~~~~lp~~~ 688 (714)
|++++| ++.- .+..+ .+|..|++++|.+.+..|...
T Consensus 277 L~l~~~-i~~~--~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 277 LQVFGI-VPDG--TLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp EECTTS-SCTT--CHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred EeccCc-cCHH--HHHHHHhhCcceEEecccCccccCCcc
Confidence 777777 3210 12222 234455566676666666543
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=1.1e-18 Score=183.29 Aligned_cols=229 Identities=16% Similarity=0.063 Sum_probs=142.9
Q ss_pred cccccEEeccCCccccccC-----CCCCCCCCcEEecCCCCC---CccCCccc-------cCCCCCCEEecCCCCCCC--
Q 042374 426 LLSSKFIDLSHSQYLIRMP-----DLSEAPNLERINLLNCTN---LVSVPSSI-------QNFNHLSMLCFEGCKSLR-- 488 (714)
Q Consensus 426 ~~~L~~L~l~~~~~~~~~~-----~~~~l~~L~~L~L~~~~~---~~~lp~~~-------~~l~~L~~L~l~~~~~~~-- 488 (714)
+++|++|++++|.+....+ .+..+++|++|+|++|.. ...+|..+ ..+++|++|++++|....
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 6677777777777654322 366777888888877632 12334333 577788888887765433
Q ss_pred --ccCCCCC-CCCCcEEEeCCCcCCCcccccccccceEecccccce-----EeccccCCC---------CCCcEEecCCC
Q 042374 489 --SFPSNLH-FVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIK-----EVPSSVGCL---------TNLKVLSLSQC 551 (714)
Q Consensus 489 --~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~-----~lp~~~~~l---------~~L~~L~l~~~ 551 (714)
.+|..+. +++|+ +|++++|.+. .++..+..+ ++|++|++++|
T Consensus 111 ~~~l~~~l~~~~~L~---------------------~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLE---------------------HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HHHHHHHHHHCTTCC---------------------EEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HHHHHHHHHhCCCCC---------------------EEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 1222221 33333 3334334433 122223333 77888888887
Q ss_pred CCC-cccc---ccccCCCCCCEEEecCCCCCC-----CCchhhhccccccccccCCccccccCccccCCCCCcccCCCcc
Q 042374 552 PRL-KRIS---TSILKLKSLQNLYLIQCFDLE-----NFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSV 622 (714)
Q Consensus 552 ~~~-~~~~---~~~~~l~~L~~L~l~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~ 622 (714)
.+. ..++ ..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+..... ..++..+
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~---------~~l~~~l 240 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS---------SALAIAL 240 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH---------HHHHHHG
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH---------HHHHHHH
Confidence 765 3333 356677788888888876542 223367777888888888887731100 1122236
Q ss_pred CCCCCCCceeccCCCcCcC-----------CCCCCCCEEECCCCCCcc-----cchhh-ccCCCCCeeccccCcccccc
Q 042374 623 ADTNDLEGLSLYLRNYALN-----------GCLSSLEYLDLSGNDFES-----LPASI-KQLSRLRKLHLCYCDKLQSI 684 (714)
Q Consensus 623 ~~~~~L~~L~l~~~~~~~~-----------~~l~~L~~L~L~~n~l~~-----lp~~l-~~l~~L~~L~l~~~~~~~~l 684 (714)
..+++|+.|+|++|.+... +.+++|+.|+|++|.++. +|..+ .++++|++|++++|++....
T Consensus 241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 6777888888888887652 447888888998888886 78777 56888999999988876554
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=1.2e-16 Score=156.64 Aligned_cols=172 Identities=23% Similarity=0.255 Sum_probs=132.8
Q ss_pred CCcEEEeCCCcCCCcccc-cccccceEecccccceEecc-ccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCC
Q 042374 498 CPVTINCGGCVNLTEFPQ-ISGSVTKLILWETAIKEVPS-SVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQC 575 (714)
Q Consensus 498 ~L~~L~l~~~~~l~~~~~-~~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 575 (714)
..+.+++++ ..++.+|. ...+++.|++++|.+..++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 15 ~~~~l~~~~-~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQG-KSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTT-CCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCC-CCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 345666665 34556663 44578888888888887765 4788888888888888877766667888888888888888
Q ss_pred CCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc-----CCCCCCCCEE
Q 042374 576 FDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL-----NGCLSSLEYL 650 (714)
Q Consensus 576 ~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-----~~~l~~L~~L 650 (714)
.+....+..+..+++|++|++++|.++.+|... +..+++|+.|+|++|.+.. ++.+++|+.|
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV-------------FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhH-------------hccCCcccEEECcCCcCCccCHHHcCcCcCCCEE
Confidence 877666667788888888888888888776654 6778888888888888765 4567888888
Q ss_pred ECCCCCCcccch-hhccCCCCCeeccccCccccc
Q 042374 651 DLSGNDFESLPA-SIKQLSRLRKLHLCYCDKLQS 683 (714)
Q Consensus 651 ~L~~n~l~~lp~-~l~~l~~L~~L~l~~~~~~~~ 683 (714)
+|++|+++.+|. .+..+++|++|++++|++...
T Consensus 161 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 888888887765 577888888888888887655
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=8.9e-17 Score=165.94 Aligned_cols=207 Identities=21% Similarity=0.185 Sum_probs=137.2
Q ss_pred eEEEecCCCCCCCCCCCCCCCcccccCCCCCCccccCCcc--cccccEEeccCCccccccC--CCCCCCCCcEEe-cCCC
Q 042374 386 RYLHWHEYPLKTLPFDFEPENLTELSLPYSKVEQSWGGKR--LLSSKFIDLSHSQYLIRMP--DLSEAPNLERIN-LLNC 460 (714)
Q Consensus 386 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~--~~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~-L~~~ 460 (714)
+.++.+++.++.+|..+ +.++++|++++|+|+.++...+ +++|++|+|++|.+...++ .|.++++|..+. +..|
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 45677888888888766 5789999999999999987654 9999999999999877665 378898887654 4445
Q ss_pred CCCccCCccccCCCCCCEEecCCCCCCCccCCCC--CCCCCcEEEeCCCcCCCccccc-----ccccceEecccccceEe
Q 042374 461 TNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNL--HFVCPVTINCGGCVNLTEFPQI-----SGSVTKLILWETAIKEV 533 (714)
Q Consensus 461 ~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~-----~~~L~~L~l~~~~i~~l 533 (714)
......|..+..+++|++|++++|.. ..+|... ....+..+++.++..+..++.. ...++.|++++|.++.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECC-SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred cccccCchhhhhcccccccccccccc-ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 44444467789999999999998654 4444432 2556667777766666555421 23455666666666666
Q ss_pred ccccCCCCCCcEEecCCCCCCccccc-cccCCCCCCEEEecCCCCCCCCchhhhcccccccc
Q 042374 534 PSSVGCLTNLKVLSLSQCPRLKRIST-SILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYN 594 (714)
Q Consensus 534 p~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 594 (714)
|..+....+|+.|++.+|...+.+|. .|.++++|++|++++|.+...-+..+.++++|+.+
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l 231 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 231 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECT
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhc
Confidence 66655556666666665444555553 34566666666666665443222334444444433
No 91
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=6.5e-19 Score=196.50 Aligned_cols=337 Identities=14% Similarity=0.097 Sum_probs=176.9
Q ss_pred HhcccCceEEEEeCCCCCCCCcccceeeccCCccc-CCCCceEEEecCCCCC---CCCCCC-CCCCcccccCCCCCCccc
Q 042374 346 FAKMSNLRLLKFYMPEHDGVPITSSKVHLDQGLEY-LPEELRYLHWHEYPLK---TLPFDF-EPENLTELSLPYSKVEQS 420 (714)
Q Consensus 346 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~L~l~~~~~~---~~~~~~-~~~~L~~L~l~~~~i~~~ 420 (714)
+..+.+|+.|+++++.+.+... ..+.. .+.++++|++.++... .++... .+++|++|++++|.+.+.
T Consensus 108 ~~~~~~L~~L~L~~~~i~~~~~--------~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~ 179 (592)
T 3ogk_B 108 SNNLRQLKSVHFRRMIVSDLDL--------DRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEK 179 (592)
T ss_dssp HHHCTTCCEEEEESCBCCHHHH--------HHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECC
T ss_pred HhhCCCCCeEEeeccEecHHHH--------HHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCc
Confidence 3467778888887764332100 00111 2334777777665411 011111 346777777777765443
Q ss_pred cCC------cccccccEEeccCCcccc----ccC-CCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCC-
Q 042374 421 WGG------KRLLSSKFIDLSHSQYLI----RMP-DLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLR- 488 (714)
Q Consensus 421 ~~~------~~~~~L~~L~l~~~~~~~----~~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~- 488 (714)
... ..+++|++|++++|.+.. ..+ .+..+++|++|++++|.. ..+|..+..+++|+.|+++.+....
T Consensus 180 ~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~ 258 (592)
T 3ogk_B 180 DGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIG 258 (592)
T ss_dssp CSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGHHHHHHCTTCCEEEECBCCCCTT
T ss_pred chhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHHHHHhhhhHHHhhcccccccccc
Confidence 211 126777777777776641 111 145567777777777643 3455666667777777775422211
Q ss_pred --ccCCCC-CCCCCcEEEeCCCcCCCccc---ccccccceEecccccceE--eccccCCCCCCcEEecCCCCCCcccccc
Q 042374 489 --SFPSNL-HFVCPVTINCGGCVNLTEFP---QISGSVTKLILWETAIKE--VPSSVGCLTNLKVLSLSQCPRLKRISTS 560 (714)
Q Consensus 489 --~~~~~~-~~~~L~~L~l~~~~~l~~~~---~~~~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~ 560 (714)
..+..+ .+.+|+.|.+.++. ...++ ...++|++|++++|.+.. ++..+..+++|++|+++++.....++..
T Consensus 259 ~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~ 337 (592)
T 3ogk_B 259 MPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVL 337 (592)
T ss_dssp CTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHH
T ss_pred hHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHH
Confidence 111111 24555555555431 11222 223355566665555431 1122344555555555422111222222
Q ss_pred ccCCCCCCEEEec------------------------------------CCCCCCCCchhhhc-cccccccccC----Cc
Q 042374 561 ILKLKSLQNLYLI------------------------------------QCFDLENFPEILEK-MEYLNYNALG----RT 599 (714)
Q Consensus 561 ~~~l~~L~~L~l~------------------------------------~~~~~~~~~~~l~~-l~~L~~L~l~----~~ 599 (714)
+..+++|++|++. .+.+....+..+.. +++|++|+++ .|
T Consensus 338 ~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n 417 (592)
T 3ogk_B 338 AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE 417 (592)
T ss_dssp HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCS
T ss_pred HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCc
Confidence 3344445555554 33332222222222 4445555443 23
Q ss_pred cccccCccccCCCCCcccCCCccCCCCCCCceeccCCC--cCc------CCCCCCCCEEECCCCCCc--ccchhhccCCC
Q 042374 600 KIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRN--YAL------NGCLSSLEYLDLSGNDFE--SLPASIKQLSR 669 (714)
Q Consensus 600 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~------~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~ 669 (714)
.++..|.. ..++..+.++++|+.|+++.|. +.. ...+++|+.|+|++|+++ .++..+.++++
T Consensus 418 ~l~~~p~~--------~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 489 (592)
T 3ogk_B 418 RITDLPLD--------NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPN 489 (592)
T ss_dssp CCSSCCCH--------HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTT
T ss_pred cccCchHH--------HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcc
Confidence 33322211 0122225568889999997654 333 234788999999999887 46767788999
Q ss_pred CCeeccccCccccc-cCC---CcCcccEeecccCc
Q 042374 670 LRKLHLCYCDKLQS-IPE---LPLSLKWLDASNCE 700 (714)
Q Consensus 670 L~~L~l~~~~~~~~-lp~---~~~~L~~L~l~~c~ 700 (714)
|++|+|++|++... ++. .+++|+.|++++|+
T Consensus 490 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 490 LQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 99999999985432 332 35789999999997
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.70 E-value=5.9e-17 Score=167.25 Aligned_cols=235 Identities=17% Similarity=0.123 Sum_probs=118.5
Q ss_pred ccccCCCCCCccccCCcccccccEEeccCCccccccC-CCCCCCCCcEEecCCCCCCccCC-ccccCCCCCCEEecCCCC
Q 042374 408 TELSLPYSKVEQSWGGKRLLSSKFIDLSHSQYLIRMP-DLSEAPNLERINLLNCTNLVSVP-SSIQNFNHLSMLCFEGCK 485 (714)
Q Consensus 408 ~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~ 485 (714)
++++.++++++.++... .++++.|+|++|++....+ .|.++++|++|+|++|...+.+| ..|.++++|+.+...+++
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 34556666777665433 4667777777777665544 36777777777777776555554 345666666554333333
Q ss_pred CCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEeccc-cCCCCCCcEEecCCCCCCccccc-cccC
Q 042374 486 SLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSS-VGCLTNLKVLSLSQCPRLKRIST-SILK 563 (714)
Q Consensus 486 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~-~~~~ 563 (714)
.+..++... ....++|++|++++|.+..+|.. +....++..|++.++.....++. .+..
T Consensus 91 ~l~~l~~~~-------------------f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~ 151 (350)
T 4ay9_X 91 NLLYINPEA-------------------FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151 (350)
T ss_dssp TCCEECTTS-------------------BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTT
T ss_pred cccccCchh-------------------hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhh
Confidence 333332211 01112334444444555544432 33444555555554433333332 2333
Q ss_pred C-CCCCEEEecCCCCCCCCchhhhccccccccccCC-ccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCcC
Q 042374 564 L-KSLQNLYLIQCFDLENFPEILEKMEYLNYNALGR-TKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYALN 641 (714)
Q Consensus 564 l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 641 (714)
+ ..++.|++++|.+. .++.......+|+.|++.+ |.++.+|... +..+++|+.|++++|.+..+
T Consensus 152 ~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~-------------f~~l~~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 152 LSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDV-------------FHGASGPVILDISRTRIHSL 217 (350)
T ss_dssp SBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTT-------------TTTEECCSEEECTTSCCCCC
T ss_pred cchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHH-------------hccCcccchhhcCCCCcCcc
Confidence 3 24555666555543 2333333444555555543 5555555433 45555555555555555442
Q ss_pred --CCCCCCCEEECCCC-CCcccchhhccCCCCCeecccc
Q 042374 642 --GCLSSLEYLDLSGN-DFESLPASIKQLSRLRKLHLCY 677 (714)
Q Consensus 642 --~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~l~~ 677 (714)
+.+.+|+.|.+.++ +++.+|. +.++++|+.+++.+
T Consensus 218 p~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 218 PSYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp CSSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred ChhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 23445555554433 3445552 45555555555543
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=2.2e-18 Score=177.48 Aligned_cols=228 Identities=18% Similarity=0.235 Sum_probs=156.5
Q ss_pred CCcccccCCCCCCccccCCcc-cccccEEeccCCccccc-cC-CCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEec
Q 042374 405 ENLTELSLPYSKVEQSWGGKR-LLSSKFIDLSHSQYLIR-MP-DLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCF 481 (714)
Q Consensus 405 ~~L~~L~l~~~~i~~~~~~~~-~~~L~~L~l~~~~~~~~-~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l 481 (714)
.+++.|++++|.+........ +++|++|++++|.+... .+ .+..+++|++|++++|......+..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 456666666666665544433 77888888888876543 33 3677788888888887655566677778888888888
Q ss_pred CCCCCCCc--cCCCCC-CCCCcEEEeCCCcCCCcccccccccceEecccccceE--eccccCCCC-CCcEEecCCCC--C
Q 042374 482 EGCKSLRS--FPSNLH-FVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKE--VPSSVGCLT-NLKVLSLSQCP--R 553 (714)
Q Consensus 482 ~~~~~~~~--~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~--lp~~~~~l~-~L~~L~l~~~~--~ 553 (714)
++|..++. ++..+. +++|++|++++|. .++. ++..+..++ +|++|++++|. +
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~--------------------~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~ 209 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCF--------------------DFTEKHVQVAVAHVSETITQLNLSGYRKNL 209 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCT--------------------TCCHHHHHHHHHHSCTTCCEEECCSCGGGS
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCC--------------------CcChHHHHHHHHhcccCCCEEEeCCCcccC
Confidence 88754442 333222 4444444444432 4442 455577888 99999999994 4
Q ss_pred C-ccccccccCCCCCCEEEecCCC-CCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCce
Q 042374 554 L-KRISTSILKLKSLQNLYLIQCF-DLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGL 631 (714)
Q Consensus 554 ~-~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L 631 (714)
. ..++..+..+++|++|++++|. +....+..+.++++|++|++++|. ...+.. ...+..+++|+.|
T Consensus 210 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~-----------~~~l~~~~~L~~L 277 (336)
T 2ast_B 210 QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY-DIIPET-----------LLELGEIPTLKTL 277 (336)
T ss_dssp CHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT-TCCGGG-----------GGGGGGCTTCCEE
T ss_pred CHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC-CCCHHH-----------HHHHhcCCCCCEE
Confidence 3 4567778899999999999998 555667789999999999999985 111111 1126789999999
Q ss_pred eccCCCcCc--CCCC-CCCCEEECCCCCCccc-chhhc
Q 042374 632 SLYLRNYAL--NGCL-SSLEYLDLSGNDFESL-PASIK 665 (714)
Q Consensus 632 ~l~~~~~~~--~~~l-~~L~~L~L~~n~l~~l-p~~l~ 665 (714)
++++| +.+ +..+ .+|+.|++++|+++.. |.+++
T Consensus 278 ~l~~~-i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 278 QVFGI-VPDGTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp ECTTS-SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred eccCc-cCHHHHHHHHhhCcceEEecccCccccCCccc
Confidence 99999 544 2223 3477888999999854 55444
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.69 E-value=3.2e-16 Score=153.63 Aligned_cols=128 Identities=20% Similarity=0.203 Sum_probs=61.9
Q ss_pred cccceEecccccceEeccc-cCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhcccccccccc
Q 042374 518 GSVTKLILWETAIKEVPSS-VGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNAL 596 (714)
Q Consensus 518 ~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 596 (714)
.+|++|++++|.+..++.. +..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 138 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEEC
Confidence 3455555555555544333 445555555555555444333344445555555555555444333333445555555555
Q ss_pred CCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc-----CCCCCCCCEEECCCCCCc
Q 042374 597 GRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL-----NGCLSSLEYLDLSGNDFE 658 (714)
Q Consensus 597 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-----~~~l~~L~~L~L~~n~l~ 658 (714)
++|.++.+|... +..+++|+.|+|++|.+.. +..+++|+.|+|++|.++
T Consensus 139 s~N~l~~~~~~~-------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 139 NTNQLQSIPAGA-------------FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CSSCCCCCCTTT-------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCCcCCccCHHH-------------cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 555554444322 4445555555555555433 233445555555555443
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.69 E-value=1.7e-18 Score=181.84 Aligned_cols=236 Identities=15% Similarity=0.097 Sum_probs=168.7
Q ss_pred CCCCCCCcEEecCCCCCCcc----CCccccCCCCCCEEecCCCCCC---CccCCCCCCCCCcEEEeCCCcCCCccccccc
Q 042374 446 LSEAPNLERINLLNCTNLVS----VPSSIQNFNHLSMLCFEGCKSL---RSFPSNLHFVCPVTINCGGCVNLTEFPQISG 518 (714)
Q Consensus 446 ~~~l~~L~~L~L~~~~~~~~----lp~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 518 (714)
+..+++|++|+|++|..... ++..+..+++|++|++++|..- ..+|..+. .+.......+
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~-------------~l~~~l~~~~ 94 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR-------------LLLQALLKCP 94 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH-------------HHHHHHTTCT
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHH-------------HHHHHHhhCC
Confidence 56678899999998865443 3344668888999999886321 11121110 0000001234
Q ss_pred ccceEecccccceE-----eccccCCCCCCcEEecCCCCCCcccc----ccccCC---------CCCCEEEecCCCCC-C
Q 042374 519 SVTKLILWETAIKE-----VPSSVGCLTNLKVLSLSQCPRLKRIS----TSILKL---------KSLQNLYLIQCFDL-E 579 (714)
Q Consensus 519 ~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l---------~~L~~L~l~~~~~~-~ 579 (714)
+|++|++++|.+.. +|..+..+++|++|++++|.+....+ ..+..+ ++|++|++++|.+. .
T Consensus 95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~ 174 (386)
T 2ca6_A 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 174 (386)
T ss_dssp TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH
Confidence 66777777777765 67778899999999999998754333 334444 89999999999876 3
Q ss_pred CCc---hhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc---------CCCCCCC
Q 042374 580 NFP---EILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL---------NGCLSSL 647 (714)
Q Consensus 580 ~~~---~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~---------~~~l~~L 647 (714)
.++ ..+..+++|++|++++|.+...... .-.+..+..+++|+.|+|++|.+.. +..+++|
T Consensus 175 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~--------~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L 246 (386)
T 2ca6_A 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE--------HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 246 (386)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSCCCHHHHH--------HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCCHhHHH--------HHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence 455 4677899999999999988621100 0011237789999999999999852 6788999
Q ss_pred CEEECCCCCCcc-----cchhhcc--CCCCCeeccccCcccc----ccCCC----cCcccEeecccCccc
Q 042374 648 EYLDLSGNDFES-----LPASIKQ--LSRLRKLHLCYCDKLQ----SIPEL----PLSLKWLDASNCERL 702 (714)
Q Consensus 648 ~~L~L~~n~l~~-----lp~~l~~--l~~L~~L~l~~~~~~~----~lp~~----~~~L~~L~l~~c~~l 702 (714)
+.|+|++|.++. +|.++.. +++|++|+|++|.+.. .+|.. +++|+.|++++|+.-
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 999999999984 5777744 9999999999999876 47752 589999999999643
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.67 E-value=2.7e-16 Score=157.49 Aligned_cols=147 Identities=21% Similarity=0.246 Sum_probs=85.6
Q ss_pred CcccccCCCCCCccccCCcccccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCC
Q 042374 406 NLTELSLPYSKVEQSWGGKRLLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCK 485 (714)
Q Consensus 406 ~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 485 (714)
.+..+.+..+.+.+......+++|+.|++++|.+.. .+.+..+++|++|++++|... .++. +..+++|++|++++|.
T Consensus 25 ~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~~l~~L~~L~L~~n~l~-~~~~-l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKS-VQGIQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSC
T ss_pred HHHHHHhcCCCcccccchhhcCcccEEEccCCCccc-ChhHhcCCCCCEEEccCCccC-CCcc-cccCCCCCEEECCCCc
Confidence 444555666666665555557777777777776543 345666777777777776533 3333 6677777777776643
Q ss_pred CCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCC
Q 042374 486 SLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLK 565 (714)
Q Consensus 486 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 565 (714)
. ..+| .+..+++|++|++++|.+.. + ..+..++
T Consensus 102 l--------------------------------------------~~~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~ 134 (291)
T 1h6t_A 102 V--------------------------------------------KDLS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLP 134 (291)
T ss_dssp C--------------------------------------------CCGG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCT
T ss_pred C--------------------------------------------CCCh-hhccCCCCCEEECCCCcCCC-C-hhhcCCC
Confidence 2 2222 24555666666666665433 2 2455566
Q ss_pred CCCEEEecCCCCCCCCchhhhccccccccccCCcccccc
Q 042374 566 SLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIREL 604 (714)
Q Consensus 566 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 604 (714)
+|+.|++++|.+... ..+..+++|++|++++|.++.+
T Consensus 135 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 135 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc
Confidence 666666666654432 3455666666666666655443
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.67 E-value=4.3e-16 Score=169.02 Aligned_cols=189 Identities=16% Similarity=0.133 Sum_probs=106.5
Q ss_pred cccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEeCCC
Q 042374 428 SSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINCGGC 507 (714)
Q Consensus 428 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 507 (714)
+|+.|++++|.+....+.+ +++|++|++++|.. ..+| ..+++|++|++++|.. +.+|. +
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l-~~ip---~~l~~L~~L~Ls~N~l-~~ip~-l------------- 118 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNAL-ISLP---ELPASLEYLDACDNRL-STLPE-L------------- 118 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCC-SCCC---CCCTTCCEEECCSSCC-SCCCC-C-------------
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCC-cccc---cccCCCCEEEccCCCC-CCcch-h-------------
Confidence 4555555555544322223 24566666665543 2444 3355666666665432 22332 1
Q ss_pred cCCCcccccccccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhc
Q 042374 508 VNLTEFPQISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEK 587 (714)
Q Consensus 508 ~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 587 (714)
..+|++|++++|.++.+|. .+++|+.|++++|.+.+ +|. .+++|++|++++|.+.. +|. +.
T Consensus 119 ---------~~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~- 179 (571)
T 3cvr_A 119 ---------PASLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP- 179 (571)
T ss_dssp ---------CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC-
T ss_pred ---------hcCCCEEECCCCcCCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh-
Confidence 1134445555555555555 46677777777776543 554 45677777777776544 555 44
Q ss_pred cccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCcCCCCCCCCEEECCCCCCcccchhhccC
Q 042374 588 MEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYALNGCLSSLEYLDLSGNDFESLPASIKQL 667 (714)
Q Consensus 588 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l 667 (714)
++|++|++++|.|+.+|. + . . +| ....+.|+.|+|++|+++.+|..+..+
T Consensus 180 -~~L~~L~Ls~N~L~~lp~-~-------------~-~--~L------------~~~~~~L~~L~Ls~N~l~~lp~~l~~l 229 (571)
T 3cvr_A 180 -ESLEALDVSTNLLESLPA-V-------------P-V--RN------------HHSEETEIFFRCRENRITHIPENILSL 229 (571)
T ss_dssp -TTCCEEECCSSCCSSCCC-C-------------C-----------------------CCEEEECCSSCCCCCCGGGGGS
T ss_pred -CCCCEEECcCCCCCchhh-H-------------H-H--hh------------hcccccceEEecCCCcceecCHHHhcC
Confidence 677777777777766654 2 0 0 11 011334577777777777777777777
Q ss_pred CCCCeeccccCccccccCC
Q 042374 668 SRLRKLHLCYCDKLQSIPE 686 (714)
Q Consensus 668 ~~L~~L~l~~~~~~~~lp~ 686 (714)
++|+.|+|++|++.+.+|.
T Consensus 230 ~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 230 DPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CTTEEEECCSSSCCHHHHH
T ss_pred CCCCEEEeeCCcCCCcCHH
Confidence 7777777777777666554
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.67 E-value=3.8e-16 Score=148.38 Aligned_cols=157 Identities=20% Similarity=0.180 Sum_probs=73.9
Q ss_pred cccceEecccccceEeccc-cCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhcccccccccc
Q 042374 518 GSVTKLILWETAIKEVPSS-VGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNAL 596 (714)
Q Consensus 518 ~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 596 (714)
.++++|++++|.++.++.. +..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 3455555555555554443 345555555555555443333333445555555555555444333333455555555555
Q ss_pred CCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCcCCCCCCCCEEECCCCCCcccchh-hccCCCCCeecc
Q 042374 597 GRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYALNGCLSSLEYLDLSGNDFESLPAS-IKQLSRLRKLHL 675 (714)
Q Consensus 597 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~l 675 (714)
++|.++.++... +..+ ++|+.|++++|.++.+|.. +..+++|++|++
T Consensus 108 ~~N~l~~~~~~~-------------~~~l-------------------~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 108 NTNQLQSLPDGV-------------FDKL-------------------TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 155 (208)
T ss_dssp CSSCCCCCCTTT-------------TTTC-------------------TTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCcCcccCHhH-------------hccC-------------------CcCCEEECCCCccceeCHHHhccCCCccEEEe
Confidence 555554443322 3344 4555555555555544432 344555555555
Q ss_pred ccCccccccCCCcCcccEeecccCcccccccCccc
Q 042374 676 CYCDKLQSIPELPLSLKWLDASNCERLQTFPEISS 710 (714)
Q Consensus 676 ~~~~~~~~lp~~~~~L~~L~l~~c~~l~~lp~~~~ 710 (714)
++|++.... ++|+.|+++.+..-..+|+.++
T Consensus 156 ~~N~~~~~~----~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 156 HDNPWDCTC----PGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp CSCCBCCCT----TTTHHHHHHHHHCTTTBBCTTS
T ss_pred cCCCeecCC----CCHHHHHHHHHhCCceeeccCc
Confidence 555443322 2344444444444444444443
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=1.5e-17 Score=172.73 Aligned_cols=250 Identities=13% Similarity=0.053 Sum_probs=144.4
Q ss_pred ccCCCCCCccccCCcc--cccccEEeccCCccccccC-----CCCCCC-CCcEEecCCCCCCccCCccccCC-----CCC
Q 042374 410 LSLPYSKVEQSWGGKR--LLSSKFIDLSHSQYLIRMP-----DLSEAP-NLERINLLNCTNLVSVPSSIQNF-----NHL 476 (714)
Q Consensus 410 L~l~~~~i~~~~~~~~--~~~L~~L~l~~~~~~~~~~-----~~~~l~-~L~~L~L~~~~~~~~lp~~~~~l-----~~L 476 (714)
+.+++|.++...+... ..+|++|++++|.+....+ .+..++ +|++|++++|......+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566666665443322 4558888888887665543 256666 78888888876554444455543 778
Q ss_pred CEEecCCCCCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEeccc-----cCC-CCCCcEEecCC
Q 042374 477 SMLCFEGCKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSS-----VGC-LTNLKVLSLSQ 550 (714)
Q Consensus 477 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~-----~~~-l~~L~~L~l~~ 550 (714)
++|++++|......+..+. ..+.....+|++|++++|.+...+.. +.. .++|++|++++
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~---------------~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 147 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELV---------------KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG 147 (362)
T ss_dssp CEEECCSSCGGGSCHHHHH---------------HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT
T ss_pred cEEECcCCcCChHHHHHHH---------------HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC
Confidence 8888887654322221110 00001113555666666665544321 333 35777777777
Q ss_pred CCCCc----cccccccCCC-CCCEEEecCCCCCCCCchhhh----cc-ccccccccCCccccccCccccCCCCCcccCCC
Q 042374 551 CPRLK----RISTSILKLK-SLQNLYLIQCFDLENFPEILE----KM-EYLNYNALGRTKIRELPSTFEKGEGTESQLPS 620 (714)
Q Consensus 551 ~~~~~----~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~----~l-~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~ 620 (714)
|.+.. .++..+..++ +|++|++++|.+....+..+. .+ ++|++|++++|.+...... .++.
T Consensus 148 N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~---------~l~~ 218 (362)
T 3goz_A 148 NDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA---------ELAY 218 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH---------HHHH
T ss_pred CcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH---------HHHH
Confidence 76653 2333444554 777777777766554443333 33 4777777777777652111 1222
Q ss_pred ccCC-CCCCCceeccCCCcCc---------CCCCCCCCEEECCCCCCc--------ccchhhccCCCCCeeccccCcccc
Q 042374 621 SVAD-TNDLEGLSLYLRNYAL---------NGCLSSLEYLDLSGNDFE--------SLPASIKQLSRLRKLHLCYCDKLQ 682 (714)
Q Consensus 621 ~~~~-~~~L~~L~l~~~~~~~---------~~~l~~L~~L~L~~n~l~--------~lp~~l~~l~~L~~L~l~~~~~~~ 682 (714)
.+.. .++|+.|+|++|.+.. +..+++|+.|+|++|.+. .++..+..+++|++|++++|++..
T Consensus 219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 2333 3477777777777765 355677888888877632 344456677778888888887654
Q ss_pred c
Q 042374 683 S 683 (714)
Q Consensus 683 ~ 683 (714)
.
T Consensus 299 ~ 299 (362)
T 3goz_A 299 S 299 (362)
T ss_dssp G
T ss_pred c
Confidence 4
No 100
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.65 E-value=1.2e-17 Score=186.13 Aligned_cols=334 Identities=11% Similarity=-0.008 Sum_probs=211.3
Q ss_pred hcccCceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCCCCC-----CC-CCCCcccccCCCCCCccc
Q 042374 347 AKMSNLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTLPF-----DF-EPENLTELSLPYSKVEQS 420 (714)
Q Consensus 347 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~-----~~-~~~~L~~L~l~~~~i~~~ 420 (714)
..+++|+.|++++|.+.+..... +....... ..++.|++.++.+..+.. .+ .+++|++|++++|.+..+
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~----l~~~~~~~-~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l 235 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKW----LHELAQHN-TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL 235 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHH----HHHHHHHC-CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG
T ss_pred hhCCCCCEEECccccccCcchhH----HHHHHhcC-CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH
Confidence 35677777777766432211000 00011112 267777777776653321 11 456777777777777665
Q ss_pred cCCcc-cccccEEeccCCccccc----cCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCCccC-CC-
Q 042374 421 WGGKR-LLSSKFIDLSHSQYLIR----MPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFP-SN- 493 (714)
Q Consensus 421 ~~~~~-~~~L~~L~l~~~~~~~~----~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~-~~- 493 (714)
+.... +++|+.|+++....... ...+..+++|+.|+++++ ....+|..+..+++|++|++++|....... ..
T Consensus 236 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~ 314 (592)
T 3ogk_B 236 VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLI 314 (592)
T ss_dssp HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHH
T ss_pred HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHH
Confidence 53322 77777777764322211 124667788888888775 345667777888899999999887322211 11
Q ss_pred CCCCCCcEEEeCCCcCCCccc---ccccccceEeccc-----------ccceE--eccccCCCCCCcEEecCCCCCCccc
Q 042374 494 LHFVCPVTINCGGCVNLTEFP---QISGSVTKLILWE-----------TAIKE--VPSSVGCLTNLKVLSLSQCPRLKRI 557 (714)
Q Consensus 494 ~~~~~L~~L~l~~~~~l~~~~---~~~~~L~~L~l~~-----------~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~~ 557 (714)
..+++|+.|++.++..-..++ ...++|++|++.+ +.++. ++.....+++|++|++..+.+....
T Consensus 315 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~ 394 (592)
T 3ogk_B 315 QKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES 394 (592)
T ss_dssp TTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH
T ss_pred HhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH
Confidence 237888888887432212222 3346799999983 44442 3333456899999999877776666
Q ss_pred cccccC-CCCCCEEEecC---CCCCCC------CchhhhccccccccccCCcc--ccccCccccCCCCCcccCCCccCCC
Q 042374 558 STSILK-LKSLQNLYLIQ---CFDLEN------FPEILEKMEYLNYNALGRTK--IRELPSTFEKGEGTESQLPSSVADT 625 (714)
Q Consensus 558 ~~~~~~-l~~L~~L~l~~---~~~~~~------~~~~l~~l~~L~~L~l~~~~--l~~~~~~~~~~~~~~~~l~~~~~~~ 625 (714)
+..++. +++|++|++.+ |..... ++..+.++++|++|+++.+. +..... ......+
T Consensus 395 ~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~------------~~~~~~~ 462 (592)
T 3ogk_B 395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL------------SYIGQYS 462 (592)
T ss_dssp HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH------------HHHHHSC
T ss_pred HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH------------HHHHHhC
Confidence 666665 89999999973 323332 34457789999999997532 321110 0113357
Q ss_pred CCCCceeccCCCcCc------CCCCCCCCEEECCCCCCc--ccchhhccCCCCCeeccccCccccc----cCCCcCcccE
Q 042374 626 NDLEGLSLYLRNYAL------NGCLSSLEYLDLSGNDFE--SLPASIKQLSRLRKLHLCYCDKLQS----IPELPLSLKW 693 (714)
Q Consensus 626 ~~L~~L~l~~~~~~~------~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~l~~~~~~~~----lp~~~~~L~~ 693 (714)
++|+.|++++|.+.+ +..+++|++|+|++|.++ .++..+..+++|++|+|++|++... +....|.+..
T Consensus 463 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~ 542 (592)
T 3ogk_B 463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNI 542 (592)
T ss_dssp TTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEE
T ss_pred ccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEE
Confidence 899999999999876 467899999999999987 3566677899999999999996643 3334455554
Q ss_pred eeccc
Q 042374 694 LDASN 698 (714)
Q Consensus 694 L~l~~ 698 (714)
..+..
T Consensus 543 ~~~~~ 547 (592)
T 3ogk_B 543 ELIPS 547 (592)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 44443
No 101
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.64 E-value=1.7e-18 Score=193.21 Aligned_cols=336 Identities=16% Similarity=0.116 Sum_probs=182.2
Q ss_pred HhcccCceEEEEeCCCCCCCCcccceeeccCCcc-cCCCCceEEEecCC-CCCC--CCCCC-CCCCcccccCCCCCCccc
Q 042374 346 FAKMSNLRLLKFYMPEHDGVPITSSKVHLDQGLE-YLPEELRYLHWHEY-PLKT--LPFDF-EPENLTELSLPYSKVEQS 420 (714)
Q Consensus 346 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~L~l~~~-~~~~--~~~~~-~~~~L~~L~l~~~~i~~~ 420 (714)
+..+++|+.|+++++.+.+... ..+. .. .+++.|++.++ .+.. ++... .+++|++|++++|.+.+.
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~--------~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~ 171 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCL--------ELIAKSF-KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV 171 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHH--------HHHHHHC-TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECC
T ss_pred HHhCCCCCeEEeeCcEEcHHHH--------HHHHHhC-CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCc
Confidence 4456777777777765332100 0011 12 26777777666 2222 22222 456777777777765542
Q ss_pred cC-----Cc-ccccccEEeccCCc--cccc-cCC-CCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCC----
Q 042374 421 WG-----GK-RLLSSKFIDLSHSQ--YLIR-MPD-LSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKS---- 486 (714)
Q Consensus 421 ~~-----~~-~~~~L~~L~l~~~~--~~~~-~~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~---- 486 (714)
.. .. .+++|++|++++|. +... .+. +..+++|++|++++|.....+|..+..+++|+.|+++.+..
T Consensus 172 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 251 (594)
T 2p1m_B 172 SGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRP 251 (594)
T ss_dssp CGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCH
T ss_pred chHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccch
Confidence 21 11 25677777777775 1100 011 23457777777777754445566666667777776544321
Q ss_pred ---------------CC-----------ccCCCC-CCCCCcEEEeCCCcCCCcc-----cccccccceEecccccce--E
Q 042374 487 ---------------LR-----------SFPSNL-HFVCPVTINCGGCVNLTEF-----PQISGSVTKLILWETAIK--E 532 (714)
Q Consensus 487 ---------------~~-----------~~~~~~-~~~~L~~L~l~~~~~l~~~-----~~~~~~L~~L~l~~~~i~--~ 532 (714)
+. .++... .+.+|++|++++|. +... ....++|++|++.+| +. .
T Consensus 252 ~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~ 329 (594)
T 2p1m_B 252 DVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IEDAG 329 (594)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHHHH
T ss_pred hhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cCHHH
Confidence 11 111111 24666777776665 3321 123456667776665 22 1
Q ss_pred eccccCCCCCCcEEecCCC---------CCCccccccc-cCCCCCCEEEecCCCCCCCCchhhh-ccccccccccC--C-
Q 042374 533 VPSSVGCLTNLKVLSLSQC---------PRLKRISTSI-LKLKSLQNLYLIQCFDLENFPEILE-KMEYLNYNALG--R- 598 (714)
Q Consensus 533 lp~~~~~l~~L~~L~l~~~---------~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~--~- 598 (714)
++.....+++|++|++.+| .+.......+ ..+++|++|.+..+.+....+..+. .+++|+.|+++ +
T Consensus 330 l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~ 409 (594)
T 2p1m_B 330 LEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEP 409 (594)
T ss_dssp HHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESST
T ss_pred HHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccC
Confidence 1222234666777766331 1111111112 2366777776655554432223333 46777777777 2
Q ss_pred ---ccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc-----CC-CCCCCCEEECCCCCCcc--cchhhccC
Q 042374 599 ---TKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL-----NG-CLSSLEYLDLSGNDFES--LPASIKQL 667 (714)
Q Consensus 599 ---~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-----~~-~l~~L~~L~L~~n~l~~--lp~~l~~l 667 (714)
+.++..|.. ..++..+..+++|+.|++++ .+.+ +. .+++|+.|+|++|.++. ++....++
T Consensus 410 ~~~~~l~~~~~~--------~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 480 (594)
T 2p1m_B 410 KAPDYLTLEPLD--------IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC 480 (594)
T ss_dssp TCCCTTTCCCTH--------HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHC
T ss_pred CCcccccCCchh--------hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcC
Confidence 344333211 11222255678899999876 4443 22 37889999999998863 33333678
Q ss_pred CCCCeeccccCccccccC----CCcCcccEeecccCcc
Q 042374 668 SRLRKLHLCYCDKLQSIP----ELPLSLKWLDASNCER 701 (714)
Q Consensus 668 ~~L~~L~l~~~~~~~~lp----~~~~~L~~L~l~~c~~ 701 (714)
++|++|+|++|++....+ ..+++|+.|++++|+.
T Consensus 481 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 481 DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp TTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 999999999998743221 2357899999999965
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.64 E-value=1e-17 Score=173.92 Aligned_cols=248 Identities=14% Similarity=0.099 Sum_probs=164.4
Q ss_pred EEecCCCCCCCCCCC--CCCCcccccCCCCCCccccC----Cc--ccc-cccEEeccCCccccccC-CCCCC-----CCC
Q 042374 388 LHWHEYPLKTLPFDF--EPENLTELSLPYSKVEQSWG----GK--RLL-SSKFIDLSHSQYLIRMP-DLSEA-----PNL 452 (714)
Q Consensus 388 L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~----~~--~~~-~L~~L~l~~~~~~~~~~-~~~~l-----~~L 452 (714)
..++.+.+......+ .+.+|++|++++|.+..... .. .++ +|++|++++|.+....+ .+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 455566655432222 44569999999999988764 22 266 89999999999876644 34443 899
Q ss_pred cEEecCCCCCCccCCcc----ccCC-CCCCEEecCCCCCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEeccc
Q 042374 453 ERINLLNCTNLVSVPSS----IQNF-NHLSMLCFEGCKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWE 527 (714)
Q Consensus 453 ~~L~L~~~~~~~~lp~~----~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~ 527 (714)
++|++++|......+.. +..+ ++|++|++++|......+..+. ..+.....+|++|++++
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~---------------~~l~~~~~~L~~L~Ls~ 147 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK---------------QAFSNLPASITSLNLRG 147 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH---------------HHHTTSCTTCCEEECTT
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH---------------HHHHhCCCceeEEEccC
Confidence 99999999765444443 4455 8999999999864322111110 00000023566666666
Q ss_pred ccce-----EeccccCCCC-CCcEEecCCCCCCcccccc----ccCC-CCCCEEEecCCCCCCC----Cchhhhc-cccc
Q 042374 528 TAIK-----EVPSSVGCLT-NLKVLSLSQCPRLKRISTS----ILKL-KSLQNLYLIQCFDLEN----FPEILEK-MEYL 591 (714)
Q Consensus 528 ~~i~-----~lp~~~~~l~-~L~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~----~~~~l~~-l~~L 591 (714)
|.+. .++..+..++ +|++|++++|.+....+.. +..+ ++|++|++++|.+... ++..+.. .++|
T Consensus 148 N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L 227 (362)
T 3goz_A 148 NDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTC
T ss_pred CcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCc
Confidence 6665 4445555555 8999999988876555433 3344 5899999988876542 4555555 3589
Q ss_pred cccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc------------CCCCCCCCEEECCCCCCcc
Q 042374 592 NYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL------------NGCLSSLEYLDLSGNDFES 659 (714)
Q Consensus 592 ~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~------------~~~l~~L~~L~L~~n~l~~ 659 (714)
++|++++|.+...+.. .+...+..+++|+.|++++|.+.. +..+++|+.|++++|.+..
T Consensus 228 ~~L~Ls~N~l~~~~~~---------~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 228 VSLNLCLNCLHGPSLE---------NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CEEECCSSCCCCCCHH---------HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred eEEECcCCCCCcHHHH---------HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 9999999888765542 122235677889999999887332 5677889999999998873
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.63 E-value=1.5e-15 Score=166.70 Aligned_cols=78 Identities=17% Similarity=0.159 Sum_probs=49.8
Q ss_pred CCcccccCCCCCCccccCCcccccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCC
Q 042374 405 ENLTELSLPYSKVEQSWGGKRLLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGC 484 (714)
Q Consensus 405 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~ 484 (714)
..+..+.+..+.+..+.....+.+|+.|++++|.+.. ++.+..+++|+.|+|++|... .++. +..+++|+.|+|++|
T Consensus 21 ~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~-l~~l~~l~~L~~L~Ls~N~l~-~~~~-l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKS-VQGIQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCC-CTTGGGCTTCCEEECTTSCCC-CCGG-GGGCTTCCEEECCSS
T ss_pred HHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCC-ChHHccCCCCCEEEeeCCCCC-CChh-hccCCCCCEEECcCC
Confidence 3455566666666666555557777777777776543 345677777777777776533 3333 677777777777765
Q ss_pred C
Q 042374 485 K 485 (714)
Q Consensus 485 ~ 485 (714)
.
T Consensus 98 ~ 98 (605)
T 1m9s_A 98 K 98 (605)
T ss_dssp C
T ss_pred C
Confidence 3
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=3.4e-15 Score=141.71 Aligned_cols=145 Identities=18% Similarity=0.153 Sum_probs=110.8
Q ss_pred CEEecCCCCCCCccCCCCCCCCCcEEEeCCCcCCCcccc----cccccceEecccccceEeccc-cCCCCCCcEEecCCC
Q 042374 477 SMLCFEGCKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQ----ISGSVTKLILWETAIKEVPSS-VGCLTNLKVLSLSQC 551 (714)
Q Consensus 477 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~ 551 (714)
+.++.++ ..+..+|..+ ..+++.|+++++. ++.++. ...+|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 10 ~~v~c~~-~~l~~~p~~~-~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYS-QGRTSVPTGI-PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCS-SCCSSCCSCC-CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecC-CCccCCCCCC-CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 3555655 3455666544 5689999999874 444442 356899999999999999876 689999999999999
Q ss_pred CCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCce
Q 042374 552 PRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGL 631 (714)
Q Consensus 552 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L 631 (714)
.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.++.++... +..+++|+.|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-------------~~~l~~L~~L 153 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV-------------FDRLTSLQYI 153 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT-------------TTTCTTCCEE
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHH-------------hccCCCccEE
Confidence 877655566889999999999999887665666899999999999999998776543 4455555555
Q ss_pred eccCCC
Q 042374 632 SLYLRN 637 (714)
Q Consensus 632 ~l~~~~ 637 (714)
++++|.
T Consensus 154 ~l~~N~ 159 (208)
T 2o6s_A 154 WLHDNP 159 (208)
T ss_dssp ECCSCC
T ss_pred EecCCC
Confidence 555553
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.60 E-value=7.6e-15 Score=159.24 Aligned_cols=188 Identities=20% Similarity=0.196 Sum_probs=101.9
Q ss_pred CceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCCCCCCCCCCCcccccCCCCCCccccCCccccccc
Q 042374 351 NLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTLPFDFEPENLTELSLPYSKVEQSWGGKRLLSSK 430 (714)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~ 430 (714)
+++.|++++|.+.+++. . ++.+++.|++++|.+..+| ..+.+|++|++++|.++.++. ...+|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~---------~---l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~~L~ 123 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPD---------N---LPPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPASLK 123 (571)
T ss_dssp TCSEEECCSSCCSCCCS---------C---CCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCTTCC
T ss_pred CccEEEeCCCCCCccCH---------h---HcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhcCCC
Confidence 77777777765544211 1 1235666666666666665 234556666666666655444 223566
Q ss_pred EEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEeCCCcCC
Q 042374 431 FIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINCGGCVNL 510 (714)
Q Consensus 431 ~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 510 (714)
+|++++|.+.. +|. .+++|++|++++|... .+|. .+++|++|++++|.. +.+|. +
T Consensus 124 ~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~L-~~lp~-l---------------- 178 (571)
T 3cvr_A 124 HLDVDNNQLTM-LPE--LPALLEYINADNNQLT-MLPE---LPTSLEVLSVRNNQL-TFLPE-L---------------- 178 (571)
T ss_dssp EEECCSSCCSC-CCC--CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCC-SCCCC-C----------------
T ss_pred EEECCCCcCCC-CCC--cCccccEEeCCCCccC-cCCC---cCCCcCEEECCCCCC-CCcch-h----------------
Confidence 66666665544 333 4555666666555432 3443 345555555555432 22333 2
Q ss_pred CcccccccccceEecccccceEeccccCCCCCC-------cEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCch
Q 042374 511 TEFPQISGSVTKLILWETAIKEVPSSVGCLTNL-------KVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPE 583 (714)
Q Consensus 511 ~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 583 (714)
..+|+.|++++|.++.+|. +.. +| +.|++++|.+. .+|..+..+++|+.|++++|.+.+..|.
T Consensus 179 ------~~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 179 ------PESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp ------CTTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred ------hCCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 2455555566666666665 433 45 67777766543 4566666667777777777666665565
Q ss_pred hhhccc
Q 042374 584 ILEKME 589 (714)
Q Consensus 584 ~l~~l~ 589 (714)
.+..++
T Consensus 249 ~l~~l~ 254 (571)
T 3cvr_A 249 SLSQQT 254 (571)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 555544
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.60 E-value=4.1e-15 Score=142.15 Aligned_cols=143 Identities=20% Similarity=0.210 Sum_probs=70.7
Q ss_pred EecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCcccc
Q 042374 523 LILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIR 602 (714)
Q Consensus 523 L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 602 (714)
++..++.++.+|..+. ++|+.|++++|.+....+..+..+++|+.|++++|.+....|..|.++++|++|++++|.++
T Consensus 16 v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 16 VDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp EECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred EEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 3344444444444332 34455555554443333334444455555555554444333444455555555555555554
Q ss_pred ccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc-----CCCCCCCCEEECCCCCCcccch-hhccCCCCCeeccc
Q 042374 603 ELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL-----NGCLSSLEYLDLSGNDFESLPA-SIKQLSRLRKLHLC 676 (714)
Q Consensus 603 ~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~ 676 (714)
.+|..+ +..+++|+.|+|++|.+.. +..+++|+.|+|++|+++.++. .+..+++|++|+++
T Consensus 94 ~l~~~~-------------f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 94 ELPKSL-------------FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp CCCTTT-------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred ccCHhH-------------ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence 444332 3444555555555554433 3345566666666666665544 35556666666666
Q ss_pred cCcc
Q 042374 677 YCDK 680 (714)
Q Consensus 677 ~~~~ 680 (714)
+|++
T Consensus 161 ~N~~ 164 (220)
T 2v9t_B 161 QNPF 164 (220)
T ss_dssp SSCE
T ss_pred CCCc
Confidence 6654
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.60 E-value=2.3e-15 Score=150.63 Aligned_cols=173 Identities=20% Similarity=0.199 Sum_probs=104.7
Q ss_pred CCCCcccccCCCCCCccccCCcccccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecC
Q 042374 403 EPENLTELSLPYSKVEQSWGGKRLLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFE 482 (714)
Q Consensus 403 ~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~ 482 (714)
.+.+|+.|++++|.+..+.....+++|++|++++|.+....+ +..+++|++|++++|.. ..+| .+..+++|++|+++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKV-KDLS-SLKDLKKLKSLSLE 120 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCGG-GGTTCTTCCEEECT
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcC-CCCh-hhccCCCCCEEECC
Confidence 446677778888877777655558888888888888766555 78888888888888764 3443 48888888888888
Q ss_pred CCCCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEeccccCCCCCCcEEecCCCCCCcccccccc
Q 042374 483 GCKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSIL 562 (714)
Q Consensus 483 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 562 (714)
+|.. ..++... ..++|+.|++++|.+..+ ..+..+++|++|++++|.+.+..+ +.
T Consensus 121 ~n~i-~~~~~l~---------------------~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~ 175 (291)
T 1h6t_A 121 HNGI-SDINGLV---------------------HLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LA 175 (291)
T ss_dssp TSCC-CCCGGGG---------------------GCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred CCcC-CCChhhc---------------------CCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hc
Confidence 7643 2111111 112333444444444444 335556666666666665443322 55
Q ss_pred CCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccC
Q 042374 563 KLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELP 605 (714)
Q Consensus 563 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 605 (714)
.+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+...|
T Consensus 176 ~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp TCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred CCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCCc
Confidence 56666666666665433 33 2555666666666666555444
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=6.9e-15 Score=161.54 Aligned_cols=175 Identities=20% Similarity=0.216 Sum_probs=126.6
Q ss_pred CCCCcccccCCCCCCccccCCcccccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecC
Q 042374 403 EPENLTELSLPYSKVEQSWGGKRLLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFE 482 (714)
Q Consensus 403 ~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~ 482 (714)
.+.+|+.|++++|.+..++....+++|+.|+|++|.+....+ +..+++|++|+|++|.. ..+| .+..+++|+.|+|+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI-KDLS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC-CCCT-TSTTCTTCCEEECT
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCC-CCCh-hhccCCCCCEEEec
Confidence 456788888888888887765558888888888888766544 78888888888888754 3444 68888888888888
Q ss_pred CCCCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEeccccCCCCCCcEEecCCCCCCcccccccc
Q 042374 483 GCKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSIL 562 (714)
Q Consensus 483 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 562 (714)
+|... .++....+ ++|+.|+|++|.+..+ ..+..+++|+.|+|++|.+.+..| +.
T Consensus 118 ~N~l~-~l~~l~~l---------------------~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~ 172 (605)
T 1m9s_A 118 HNGIS-DINGLVHL---------------------PQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LA 172 (605)
T ss_dssp TSCCC-CCGGGGGC---------------------TTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GT
T ss_pred CCCCC-CCccccCC---------------------CccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hc
Confidence 86532 22221112 3455555555666666 457788888888888887765554 78
Q ss_pred CCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCcc
Q 042374 563 KLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPST 607 (714)
Q Consensus 563 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~ 607 (714)
.+++|+.|++++|.+.. + ..+..+++|+.|++++|.+...|..
T Consensus 173 ~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp TCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEECCCCC
T ss_pred cCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcCCccc
Confidence 88888888888887654 3 3578888888888888888766654
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=9e-15 Score=140.78 Aligned_cols=153 Identities=22% Similarity=0.157 Sum_probs=114.6
Q ss_pred cccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccC
Q 042374 518 GSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALG 597 (714)
Q Consensus 518 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 597 (714)
+..+.++.+++.+..+|..+. ++|++|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 19 Cs~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 19 CSGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp EETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EeCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 345566677777777777554 778888888887777667777888888888888887654444557788888888888
Q ss_pred CccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc----CCCCCCCCEEECCCCCCcccch-hhccCCCCCe
Q 042374 598 RTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL----NGCLSSLEYLDLSGNDFESLPA-SIKQLSRLRK 672 (714)
Q Consensus 598 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~----~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~ 672 (714)
+|.++.++... +..+++|+.|++++|.+.. +..+++|+.|+|++|+++.+|. .+..+++|+.
T Consensus 97 ~N~l~~l~~~~-------------~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 97 TNQLTVLPSAV-------------FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163 (229)
T ss_dssp SSCCCCCCTTT-------------TTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCcCCccChhH-------------hCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 88887776543 6677888888888887765 3467888888888888888774 5778888888
Q ss_pred eccccCccccccC
Q 042374 673 LHLCYCDKLQSIP 685 (714)
Q Consensus 673 L~l~~~~~~~~lp 685 (714)
|++++|++....+
T Consensus 164 L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 164 AYLFGNPWDCECR 176 (229)
T ss_dssp EECTTSCBCTTBG
T ss_pred EEeeCCCccCCcc
Confidence 8888888765443
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=2.8e-15 Score=140.82 Aligned_cols=145 Identities=13% Similarity=0.147 Sum_probs=74.4
Q ss_pred cccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccC
Q 042374 518 GSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALG 597 (714)
Q Consensus 518 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 597 (714)
.+++.|+++++.+..+| .+..+++|++|++++|.+ .. +..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~-~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHA-TN-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCC-SC-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCC-Cc-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 34555556556666555 456666666666666632 22 2345556666666666665544445555566666666666
Q ss_pred CccccccCccccCCCCCcccCCCccCCCCCCCceeccCCC-cCc---CCCCCCCCEEECCCCCCcccchhhccCCCCCee
Q 042374 598 RTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRN-YAL---NGCLSSLEYLDLSGNDFESLPASIKQLSRLRKL 673 (714)
Q Consensus 598 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~---~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L 673 (714)
+|.+..... ..+..+++|+.|++++|. +.. +..+++|+.|++++|.++.++ .+..+++|+.|
T Consensus 121 ~n~i~~~~~-------------~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L 186 (197)
T 4ezg_A 121 HSAHDDSIL-------------TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQL 186 (197)
T ss_dssp SSBCBGGGH-------------HHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEE
T ss_pred CCccCcHhH-------------HHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEE
Confidence 665543111 114444455555555444 332 333445555555555555444 34445555555
Q ss_pred ccccCc
Q 042374 674 HLCYCD 679 (714)
Q Consensus 674 ~l~~~~ 679 (714)
++++|+
T Consensus 187 ~l~~N~ 192 (197)
T 4ezg_A 187 YAFSQT 192 (197)
T ss_dssp EECBC-
T ss_pred EeeCcc
Confidence 555544
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.57 E-value=1.4e-14 Score=138.46 Aligned_cols=131 Identities=16% Similarity=0.119 Sum_probs=65.7
Q ss_pred ccceEecccccceEecc--ccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhcccccccccc
Q 042374 519 SVTKLILWETAIKEVPS--SVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNAL 596 (714)
Q Consensus 519 ~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 596 (714)
.+++|++++|.++.++. .+..+++|++|++++|.+.+..+..+.++++|++|++++|.+....+..+..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 34455555555554422 1445555555555555444333334455555555555555444433344445555555555
Q ss_pred CCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCcCCCCCCCCEEECCCCCCccc-chhhccCCCCCeecc
Q 042374 597 GRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYALNGCLSSLEYLDLSGNDFESL-PASIKQLSRLRKLHL 675 (714)
Q Consensus 597 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~l 675 (714)
++|.++.++... + ..+++|+.|+|++|+++.+ |..+..+++|++|++
T Consensus 113 s~N~l~~~~~~~-------------~-------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 113 RSNRITCVGNDS-------------F-------------------IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp TTSCCCCBCTTS-------------S-------------------TTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCcCCeECHhH-------------c-------------------CCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence 555544432211 3 3455566666666666655 445556666666666
Q ss_pred ccCccc
Q 042374 676 CYCDKL 681 (714)
Q Consensus 676 ~~~~~~ 681 (714)
++|++.
T Consensus 161 ~~N~l~ 166 (220)
T 2v70_A 161 LANPFN 166 (220)
T ss_dssp CSCCEE
T ss_pred cCcCCc
Confidence 666543
No 112
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.56 E-value=4.8e-17 Score=181.51 Aligned_cols=345 Identities=12% Similarity=0.065 Sum_probs=207.4
Q ss_pred HHHhcccCceEEEEeCCCCCC-CCcccce--eecc---CCcccCCCCceEEEecCCCCCCCC-CCC--CCCCcccccCCC
Q 042374 344 QAFAKMSNLRLLKFYMPEHDG-VPITSSK--VHLD---QGLEYLPEELRYLHWHEYPLKTLP-FDF--EPENLTELSLPY 414 (714)
Q Consensus 344 ~~~~~l~~L~~L~l~~~~~~~-~~~~~~~--~~~~---~~~~~l~~~l~~L~l~~~~~~~~~-~~~--~~~~L~~L~l~~ 414 (714)
..+..+++|+.|.+..+.... ....... .... ..+..-...++.|+++++.+.... ..+ .+++|++|++++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence 456777888889888764211 0000000 0000 000111237889999988754321 111 467999999998
Q ss_pred C-CCcc--ccCCc-ccccccEEeccCCccccccC----C-CCCCCCCcEEecCCCC-CC--ccCCccccCCCCCCEEecC
Q 042374 415 S-KVEQ--SWGGK-RLLSSKFIDLSHSQYLIRMP----D-LSEAPNLERINLLNCT-NL--VSVPSSIQNFNHLSMLCFE 482 (714)
Q Consensus 415 ~-~i~~--~~~~~-~~~~L~~L~l~~~~~~~~~~----~-~~~l~~L~~L~L~~~~-~~--~~lp~~~~~l~~L~~L~l~ 482 (714)
| .+.. +.... .+++|++|++++|.+....+ . ...+++|++|++++|. .+ ..++..+..+++|++|+++
T Consensus 140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence 8 4543 22222 38999999999998654322 2 3477899999999885 11 1122234567999999999
Q ss_pred CCCCCCccCCCCC-CCCCcEEEeCCC-------------------cCCCcc-----------cc---cccccceEecccc
Q 042374 483 GCKSLRSFPSNLH-FVCPVTINCGGC-------------------VNLTEF-----------PQ---ISGSVTKLILWET 528 (714)
Q Consensus 483 ~~~~~~~~~~~~~-~~~L~~L~l~~~-------------------~~l~~~-----------~~---~~~~L~~L~l~~~ 528 (714)
+|..+..++..+. +++|+.|.++.| ..++.+ +. ..++|++|++++|
T Consensus 220 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 299 (594)
T 2p1m_B 220 RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA 299 (594)
T ss_dssp TTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTC
T ss_pred CCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCC
Confidence 9866555554444 677888875543 222221 11 2357778888777
Q ss_pred cceE--eccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCC--------CCCC-C-Cchhhhcccccccccc
Q 042374 529 AIKE--VPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQC--------FDLE-N-FPEILEKMEYLNYNAL 596 (714)
Q Consensus 529 ~i~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--------~~~~-~-~~~~l~~l~~L~~L~l 596 (714)
.+.. ++..+..+++|++|++++|.....++.....+++|++|++.+| .... . +......+++|++|.+
T Consensus 300 ~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~ 379 (594)
T 2p1m_B 300 TVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY 379 (594)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred CCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH
Confidence 7552 2233567778888888776221222323345778888887432 1111 1 1122234777888877
Q ss_pred CCccccccCccccCCCCCcccCCCccCCCCCCCceecc--C----CCcCc----------CCCCCCCCEEECCCCCCc-c
Q 042374 597 GRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLY--L----RNYAL----------NGCLSSLEYLDLSGNDFE-S 659 (714)
Q Consensus 597 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~--~----~~~~~----------~~~l~~L~~L~L~~n~l~-~ 659 (714)
+.+.++..... .....+++|+.|+++ + +.+.. +..+++|+.|+|++ .++ .
T Consensus 380 ~~~~l~~~~~~------------~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 380 FCRQMTNAALI------------TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp EESCCCHHHHH------------HHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred hcCCcCHHHHH------------HHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence 66666432111 112357899999998 3 34442 34578999999987 555 3
Q ss_pred cchhhcc-CCCCCeeccccCccccccC----CCcCcccEeecccCcc
Q 042374 660 LPASIKQ-LSRLRKLHLCYCDKLQSIP----ELPLSLKWLDASNCER 701 (714)
Q Consensus 660 lp~~l~~-l~~L~~L~l~~~~~~~~lp----~~~~~L~~L~l~~c~~ 701 (714)
.+..+.. +++|+.|++++|.+...-+ ..+++|+.|++++|+.
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 3334444 8999999999998754322 2368999999999975
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=3.4e-17 Score=178.83 Aligned_cols=134 Identities=17% Similarity=0.138 Sum_probs=89.7
Q ss_pred cceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCc
Q 042374 520 VTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRT 599 (714)
Q Consensus 520 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 599 (714)
|+.+.+.+|.+..+|.. .|+.|++++|.+.+ +|. ++.+++|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus 425 L~~l~l~~n~i~~l~~~-----~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYA-----DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN 496 (567)
T ss_dssp HHHHHHHHHHHHHHHHT-----TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS
T ss_pred hhhhhhhcccccccCcc-----CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCC
Confidence 33444455555555432 47778888776543 564 777777888888777655 56777777777777777777
Q ss_pred cccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCcCCCCCCCCEEECCCCCCccc--chhhccCCCCCeecccc
Q 042374 600 KIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYALNGCLSSLEYLDLSGNDFESL--PASIKQLSRLRKLHLCY 677 (714)
Q Consensus 600 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~l~~ 677 (714)
.++.+| . + +.+++|+.|+|++|+++.+ |..+.++++|+.|+|++
T Consensus 497 ~l~~lp-~--------------l-------------------~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 497 ALENVD-G--------------V-------------------ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp CCCCCG-G--------------G-------------------TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred CCCCCc-c--------------c-------------------CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 776555 2 2 4466677777777777766 77788888888888888
Q ss_pred CccccccCC------CcCcccEee
Q 042374 678 CDKLQSIPE------LPLSLKWLD 695 (714)
Q Consensus 678 ~~~~~~lp~------~~~~L~~L~ 695 (714)
|++.+..|. .+|+|+.|+
T Consensus 543 N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 543 NSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CcCCCCccHHHHHHHHCcccCccC
Confidence 876554443 145666664
No 114
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.55 E-value=7.9e-14 Score=147.70 Aligned_cols=249 Identities=11% Similarity=0.030 Sum_probs=150.2
Q ss_pred CCCCcccchhhHHHHHhhh-cc--cC--CCeEEEEE--EccCchhHHHHHHHHHHHHhhc-----cc-ceEEeeechhcc
Q 042374 55 DLDGFVGLNSRIEEVKSLL-CL--ES--RDVRIVGI--WGMGGIGKTTIASAVFHQISRH-----FQ-GKCFMANVREES 121 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l-~~--~~--~~~~vv~i--~G~~GiGKTtLa~~~~~~~~~~-----f~-~~~~~~~~~~~~ 121 (714)
.+..++||+.+++++.+++ .. .. ...+.+.| +|++|+||||||+.++++.... +. .++|+. +.
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 95 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----AF 95 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE----GG
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE----CC
Confidence 4578999999999999988 42 12 23456777 9999999999999999876553 22 245555 33
Q ss_pred cccChHHHHHHHHHHHhCCCCCc-ccchhhH-HHHHHHhc--CCcEEEEEeCCCCC-------HHHHHHHhcCCCCC---
Q 042374 122 NKMGAIHVRDEVISQVLGDKNLK-IGTLVIH-QNIRKRLR--QVKMLIVLDAVHDG-------FTQLESLAGELDKF--- 187 (714)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~l~~~l~--~k~~LlVlDdv~~~-------~~~~~~l~~~l~~~--- 187 (714)
...+...+..+++.++ +..... ....... +.+.+.+. +++++||+||++.. .+.+..+...+...
T Consensus 96 ~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 174 (412)
T 1w5s_A 96 NAPNLYTILSLIVRQT-GYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR 174 (412)
T ss_dssp GCCSHHHHHHHHHHHH-TCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred CCCCHHHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC
Confidence 4456677888888774 332221 1122233 56666664 67999999999753 13333333332211
Q ss_pred C--CCcEEEEEcCChhHHHhc---------CCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhc----
Q 042374 188 T--TGSRIIITTRDKQVLDKC---------GVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYAR---- 252 (714)
Q Consensus 188 ~--~gs~IliTtR~~~v~~~~---------~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~---- 252 (714)
+ ....||+||+...+.... .....+.+++++.++++++|..++........-..+.+..+++.++
T Consensus 175 ~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 175 DGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKG 254 (412)
T ss_dssp TSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGT
T ss_pred CCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhcc
Confidence 2 344577788755432111 1223499999999999999976643111111111256788999999
Q ss_pred --CCChhhHHhhhhhc------c---CCHHHHHHHHHHHhcCCCchHHHHHHHhhhcCchhhHhhhhhccccc
Q 042374 253 --NNPLALEVLGSSLY------Q---KSKQQWEDRLHNLRLISEPNIYKVLKISYDELNSKEKEMFLDIACFF 314 (714)
Q Consensus 253 --g~Plai~~~~~~l~------~---~~~~~w~~~l~~l~~~~~~~~~~~l~ls~~~L~~~~k~~~~~~~~fp 314 (714)
|+|..+..+..... + .+...+..++..... ...+.-.+..||...+.++..++.+.
T Consensus 255 ~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~ 321 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEAT 321 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99976655543221 1 123444444433210 12233356788999999888888764
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.55 E-value=1.3e-14 Score=150.32 Aligned_cols=168 Identities=21% Similarity=0.179 Sum_probs=128.2
Q ss_pred cEEEeCCCcCCCcccc-cccccceEecccccceEeccc-cC-CCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCC
Q 042374 500 VTINCGGCVNLTEFPQ-ISGSVTKLILWETAIKEVPSS-VG-CLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCF 576 (714)
Q Consensus 500 ~~L~l~~~~~l~~~~~-~~~~L~~L~l~~~~i~~lp~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 576 (714)
+.+++++ ..++.+|. ....++.|+|++|.++.++.. +. .+++|++|+|++|.+....+..+.++++|++|++++|.
T Consensus 21 ~~l~c~~-~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSK-QQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCS-SCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCC-CCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 4556655 35666764 445688899999999888766 44 88899999999888776666778888899999998888
Q ss_pred CCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCcC--------CCCCCCC
Q 042374 577 DLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYALN--------GCLSSLE 648 (714)
Q Consensus 577 ~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~--------~~l~~L~ 648 (714)
+....+..|..+++|++|++++|.+..++... +..+++|+.|+|++|.+..+ ..+++|+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~-------------~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA-------------FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTT-------------TTTCTTCCEEECCSSCCCSCCGGGTC----CTTCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHH-------------hCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCC
Confidence 76555566888889999999998887765433 77888888888888887762 4578888
Q ss_pred EEECCCCCCcccch-hhccCCC--CCeeccccCccc
Q 042374 649 YLDLSGNDFESLPA-SIKQLSR--LRKLHLCYCDKL 681 (714)
Q Consensus 649 ~L~L~~n~l~~lp~-~l~~l~~--L~~L~l~~~~~~ 681 (714)
.|+|++|+++.+|. .+..++. |+.|+|++|++.
T Consensus 167 ~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp EEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred EEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 88888888888774 5666776 478888888764
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=2e-14 Score=134.92 Aligned_cols=151 Identities=17% Similarity=0.207 Sum_probs=91.3
Q ss_pred cccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEeC
Q 042374 426 LLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINCG 505 (714)
Q Consensus 426 ~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 505 (714)
+++|+.|++++|.+. .++.+..+++|++|++++|. ...+ ..+..+++|++|++++|....
T Consensus 43 l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l~~n~-~~~~-~~l~~l~~L~~L~l~~n~l~~----------------- 102 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLTGIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTS----------------- 102 (197)
T ss_dssp HHTCCEEEEESSCCS-CCTTGGGCTTCSEEEEESCC-CSCC-GGGTTCTTCCEEEEECTTCBG-----------------
T ss_pred cCCccEEeccCCCcc-ChHHHhcCCCCCEEEccCCC-CCcc-hhhhcCCCCCEEEeECCccCc-----------------
Confidence 556666666666554 33355566666666666652 2222 345556666666665543211
Q ss_pred CCcCCCcccccccccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhh
Q 042374 506 GCVNLTEFPQISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEIL 585 (714)
Q Consensus 506 ~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 585 (714)
..|..+..+++|++|++++|.+....+..+..+++|++|++++|.....+| .+
T Consensus 103 --------------------------~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l 155 (197)
T 4ezg_A 103 --------------------------DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PL 155 (197)
T ss_dssp --------------------------GGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GG
T ss_pred --------------------------ccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hh
Confidence 124446667777788887777766666677777778888887776444455 57
Q ss_pred hccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCc
Q 042374 586 EKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNY 638 (714)
Q Consensus 586 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 638 (714)
..+++|++|++++|.++.++. +..+++|+.|++++|.+
T Consensus 156 ~~l~~L~~L~l~~n~i~~~~~---------------l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 156 KTLPELKSLNIQFDGVHDYRG---------------IEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp GGCSSCCEEECTTBCCCCCTT---------------GGGCSSCCEEEECBC--
T ss_pred cCCCCCCEEECCCCCCcChHH---------------hccCCCCCEEEeeCccc
Confidence 777777777777777765541 44555555555555543
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.54 E-value=3.1e-14 Score=147.42 Aligned_cols=169 Identities=20% Similarity=0.153 Sum_probs=129.4
Q ss_pred CEEecCCCCCCCccCCCCCCCCCcEEEeCCCcCCCcccc-----cccccceEecccccceEecc-ccCCCCCCcEEecCC
Q 042374 477 SMLCFEGCKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQ-----ISGSVTKLILWETAIKEVPS-SVGCLTNLKVLSLSQ 550 (714)
Q Consensus 477 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-----~~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~ 550 (714)
+.+++++ ..++.+|..+ ...++.|+++++ .++.++. ...+|+.|+|++|.+..++. .+..+++|++|+|++
T Consensus 21 ~~l~c~~-~~l~~iP~~~-~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSK-QQLPNVPQSL-PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCS-SCCSSCCSSC-CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCC-CCcCccCccC-CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 5677776 4566677654 356888999885 4554432 45688999999999998875 488999999999999
Q ss_pred CCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCc
Q 042374 551 CPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEG 630 (714)
Q Consensus 551 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~ 630 (714)
|.+....+..+..+++|+.|++++|.+....+..|..+++|++|++++|.++.+|..+.. .+..+++|+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~----------~~~~l~~L~~ 167 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK----------DGNKLPKLML 167 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC--------------CTTCCE
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhc----------CcccCCcCCE
Confidence 987666666788899999999999988766677889999999999999999888876410 0256889999
Q ss_pred eeccCCCcCcC-----CCCCC--CCEEECCCCCCc
Q 042374 631 LSLYLRNYALN-----GCLSS--LEYLDLSGNDFE 658 (714)
Q Consensus 631 L~l~~~~~~~~-----~~l~~--L~~L~L~~n~l~ 658 (714)
|+|++|.+..+ ..++. |+.|+|++|.+.
T Consensus 168 L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 168 LDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp EECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred EECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 99999988763 34554 478999999876
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.53 E-value=1.8e-14 Score=141.84 Aligned_cols=142 Identities=24% Similarity=0.253 Sum_probs=74.2
Q ss_pred cccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccC
Q 042374 518 GSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALG 597 (714)
Q Consensus 518 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 597 (714)
.+|+.|++++|.+..+| .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+.. +|.. .. ++|++|+++
T Consensus 41 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~ 114 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLD 114 (263)
T ss_dssp TTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECC
T ss_pred CcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEcc
Confidence 35555555555555554 455555555555555544332 22 5555555555555554433 2221 11 555555555
Q ss_pred CccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc---CCCCCCCCEEECCCCCCcccchhhccCCCCCeec
Q 042374 598 RTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL---NGCLSSLEYLDLSGNDFESLPASIKQLSRLRKLH 674 (714)
Q Consensus 598 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~---~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 674 (714)
+|.++.++. +..+++|+.|++++|.+.. ++.+++|+.|++++|.++.+ ..+..+++|+.|+
T Consensus 115 ~N~l~~~~~---------------l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~ 178 (263)
T 1xeu_A 115 NNELRDTDS---------------LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWID 178 (263)
T ss_dssp SSCCSBSGG---------------GTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEE
T ss_pred CCccCCChh---------------hcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEe
Confidence 555544321 4455555555555555544 33455555555655555555 3455555555555
Q ss_pred cccCccc
Q 042374 675 LCYCDKL 681 (714)
Q Consensus 675 l~~~~~~ 681 (714)
+++|++.
T Consensus 179 l~~N~~~ 185 (263)
T 1xeu_A 179 LTGQKCV 185 (263)
T ss_dssp EEEEEEE
T ss_pred CCCCccc
Confidence 5555543
No 119
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.51 E-value=1.4e-13 Score=131.37 Aligned_cols=58 Identities=24% Similarity=0.260 Sum_probs=31.2
Q ss_pred ccccEEeccCCccccccC-CCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCC
Q 042374 427 LSSKFIDLSHSQYLIRMP-DLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGC 484 (714)
Q Consensus 427 ~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~ 484 (714)
++|+.|++++|.+....+ .|..+++|++|+|++|......|..+..+++|++|+|++|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 344555555555444333 3555566666666665544444555666666666666553
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.50 E-value=1.3e-13 Score=131.61 Aligned_cols=40 Identities=23% Similarity=0.166 Sum_probs=18.1
Q ss_pred cCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCC
Q 042374 537 VGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCF 576 (714)
Q Consensus 537 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 576 (714)
+..+++|++|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 125 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 125 FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp STTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred cCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 3444444444444444443334444444444444444443
No 121
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.50 E-value=4.2e-13 Score=138.74 Aligned_cols=197 Identities=14% Similarity=0.107 Sum_probs=122.4
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhc--ccccChHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREE--SNKMGAIHVRDE 132 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~--~~~~~~~~~~~~ 132 (714)
.+..|+||+.+++.|.+++..+ +++.|+|++|+|||||+++++++.. .+|+...... ........+.+.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEEeecccccccCCCHHHHHHH
Confidence 5567999999999999988542 6899999999999999999997751 5666522111 001133344444
Q ss_pred HHHHHhCC-----------------CC-CcccchhhH-HHHHHHhcC-CcEEEEEeCCCCCH--------HHHHHHhcCC
Q 042374 133 VISQVLGD-----------------KN-LKIGTLVIH-QNIRKRLRQ-VKMLIVLDAVHDGF--------TQLESLAGEL 184 (714)
Q Consensus 133 ~~~~~~~~-----------------~~-~~~~~~~~~-~~l~~~l~~-k~~LlVlDdv~~~~--------~~~~~l~~~l 184 (714)
+... ++. .. ......+.. +.+.+.... ++++||+||++... ..+..+....
T Consensus 81 l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~ 159 (350)
T 2qen_A 81 LQST-ISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY 159 (350)
T ss_dssp HHHH-SCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH
T ss_pred HHHH-HHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH
Confidence 4333 211 00 001122222 444444432 48999999997631 1223332221
Q ss_pred CCCCCCcEEEEEcCChhH-HHh----------c-CCCeEEecCCCCHHHHHHHHHHhhhhcC-CCChhHHHHHHHHHHHh
Q 042374 185 DKFTTGSRIIITTRDKQV-LDK----------C-GVNYVYEVEGLEHNKAFELFYRKAFRQN-NYPPDFLGLSLEVVHYA 251 (714)
Q Consensus 185 ~~~~~gs~IliTtR~~~v-~~~----------~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~ 251 (714)
. ..++.++|+|++.... ... . .....+++.+|+.+|+.+++........ ... .+.+..+++.+
T Consensus 160 ~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~~i~~~t 235 (350)
T 2qen_A 160 D-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIEEAVELL 235 (350)
T ss_dssp H-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHH
T ss_pred H-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHh
Confidence 1 1257789999887653 211 1 1234799999999999999977532111 112 25678999999
Q ss_pred cCCChhhHHhhhhh
Q 042374 252 RNNPLALEVLGSSL 265 (714)
Q Consensus 252 ~g~Plai~~~~~~l 265 (714)
+|+|+++..++..+
T Consensus 236 gG~P~~l~~~~~~~ 249 (350)
T 2qen_A 236 DGIPGWLVVFGVEY 249 (350)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999988754
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=5.1e-14 Score=138.54 Aligned_cols=173 Identities=17% Similarity=0.158 Sum_probs=124.0
Q ss_pred CCCCcccccCCCCCCccccCCcccccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecC
Q 042374 403 EPENLTELSLPYSKVEQSWGGKRLLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFE 482 (714)
Q Consensus 403 ~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~ 482 (714)
.+.++..+++.++.++++.....+++|++|++++|.+.. .+.+..+++|++|++++|.. ..++. +..+++|++|+++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~-l~~l~~l~~L~~L~L~~N~i-~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS-LAGMQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC-CTTGGGCTTCCEEECCSSCC-CCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc-chHHhhCCCCCEEECCCCcc-CCChh-hccCCCCCEEECC
Confidence 345677788888888887755558899999999987654 45788889999999998864 44555 8889999999998
Q ss_pred CCCCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEeccccCCCCCCcEEecCCCCCCcccccccc
Q 042374 483 GCKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSIL 562 (714)
Q Consensus 483 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 562 (714)
+|.. +.+|... . .+|+.|++++|.++.++ .+..+++|+.|++++|.+.+ ++ .+.
T Consensus 94 ~N~l-~~l~~~~--------------------~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~ 147 (263)
T 1xeu_A 94 RNRL-KNLNGIP--------------------S--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKS-IV-MLG 147 (263)
T ss_dssp SSCC-SCCTTCC--------------------C--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCB-CG-GGG
T ss_pred CCcc-CCcCccc--------------------c--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCC-Ch-HHc
Confidence 8643 3333211 1 45666666667777664 47778888888888877544 33 577
Q ss_pred CCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCc
Q 042374 563 KLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPS 606 (714)
Q Consensus 563 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~ 606 (714)
.+++|+.|++++|.+... ..+..+++|+.|++++|.+...|.
T Consensus 148 ~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 148 FLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp GCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred cCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence 778888888888776543 557777788888888877766554
No 123
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=2.9e-12 Score=134.15 Aligned_cols=239 Identities=13% Similarity=0.085 Sum_probs=155.0
Q ss_pred CCCcccchhhHHHHHhhhcc--cCCCeEEEEEEccCchhHHHHHHHHHHHHhhc--------ccceEEeeechhccccc-
Q 042374 56 LDGFVGLNSRIEEVKSLLCL--ESRDVRIVGIWGMGGIGKTTIASAVFHQISRH--------FQGKCFMANVREESNKM- 124 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~--~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~--------f~~~~~~~~~~~~~~~~- 124 (714)
+..++||+++++++.+++.. .....+.+.|+|++|+|||++|+.+++..... ....+|+. +....
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~ 94 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN----CREVGG 94 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE----HHHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE----CccCCC
Confidence 47799999999999887754 23445689999999999999999999976543 23445555 23333
Q ss_pred ChHHHHHHHHHHHhCCCCCcccc-hhh-HHHHHHHhcCCcEEEEEeCCCCCH-----HH-HHHHhcCCCCCCCCcEEEEE
Q 042374 125 GAIHVRDEVISQVLGDKNLKIGT-LVI-HQNIRKRLRQVKMLIVLDAVHDGF-----TQ-LESLAGELDKFTTGSRIIIT 196 (714)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~l~~~l~~k~~LlVlDdv~~~~-----~~-~~~l~~~l~~~~~gs~IliT 196 (714)
+...+..+++.++.+........ ... .+.+.+.+..++.+||+||++... +. +..+.... .+..||+|
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~ 170 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMI 170 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEE
Confidence 56677788887765553322221 223 366777777666699999996531 22 33444332 67788889
Q ss_pred cCChhH----HHh--cCCCeEEecCCCCHHHHHHHHHHhhhh---cCCCChhHHHHHHHHHHHhc---CCChhh-HHhhh
Q 042374 197 TRDKQV----LDK--CGVNYVYEVEGLEHNKAFELFYRKAFR---QNNYPPDFLGLSLEVVHYAR---NNPLAL-EVLGS 263 (714)
Q Consensus 197 tR~~~v----~~~--~~~~~~~~l~~L~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~i~~~~~---g~Plai-~~~~~ 263 (714)
|+.... ... ......+.+++++.++..+++..++.. ....++ +....+++.++ |.|..+ ..+-.
T Consensus 171 t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~ 247 (384)
T 2qby_B 171 SNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFR 247 (384)
T ss_dssp CSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 886531 111 122238999999999999999987532 222222 45677888888 888733 33322
Q ss_pred hh--c----cCCHHHHHHHHHHHhcCCCchHHHHHHHhhhcCchhhHhhhhhccc
Q 042374 264 SL--Y----QKSKQQWEDRLHNLRLISEPNIYKVLKISYDELNSKEKEMFLDIAC 312 (714)
Q Consensus 264 ~l--~----~~~~~~w~~~l~~l~~~~~~~~~~~l~ls~~~L~~~~k~~~~~~~~ 312 (714)
.. . .-+.+.+..+++.... ..+..++..++.+.+..+..++.
T Consensus 248 a~~~a~~~~~i~~~~v~~~~~~~~~-------~~~~~~~~~l~~~~~~~l~al~~ 295 (384)
T 2qby_B 248 AAQLASGGGIIRKEHVDKAIVDYEQ-------ERLIEAVKALPFHYKLALRSLIE 295 (384)
T ss_dssp HHHHTTSSSCCCHHHHHHHHHHHHH-------HHHHHHHHSSCHHHHHHHHHHHT
T ss_pred HHHHhcCCCccCHHHHHHHHHHHhc-------chHHHHHHcCCHHHHHHHHHHHH
Confidence 21 1 1256777777765432 34555677888888777766665
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.48 E-value=5.3e-13 Score=128.36 Aligned_cols=69 Identities=23% Similarity=0.297 Sum_probs=42.5
Q ss_pred cCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCc
Q 042374 537 VGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPS 606 (714)
Q Consensus 537 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~ 606 (714)
+..+++|++|+|++|.+....+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++.+|.
T Consensus 84 ~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 84 FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred cccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH
Confidence 455666666666666554444444566666666666666544 456666666677777777766665554
No 125
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.47 E-value=7.1e-13 Score=137.39 Aligned_cols=240 Identities=17% Similarity=0.155 Sum_probs=135.3
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhc-ccccChHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREE-SNKMGAIHVRDEV 133 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~ 133 (714)
.+..||||+++++.|.+ +.. +++.|+|++|+|||+|+++++++.... .+|+...... ............+
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEchhhccccCCCHHHHHHHH
Confidence 45679999999999999 743 589999999999999999999876532 4666522110 0011222222222
Q ss_pred HHHH-------------hCCC------C--Cccc----chhhHHHHHHHhcC---CcEEEEEeCCCCCH-----HHHHHH
Q 042374 134 ISQV-------------LGDK------N--LKIG----TLVIHQNIRKRLRQ---VKMLIVLDAVHDGF-----TQLESL 180 (714)
Q Consensus 134 ~~~~-------------~~~~------~--~~~~----~~~~~~~l~~~l~~---k~~LlVlDdv~~~~-----~~~~~l 180 (714)
...+ ++.- . .... .......+.+.+.. ++++||+||++... ..+..+
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHH
Confidence 2211 1110 0 0000 01112333333321 48999999996520 112222
Q ss_pred hcCCCCCCCCcEEEEEcCChhHHH-h----------cCC-CeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHH
Q 042374 181 AGELDKFTTGSRIIITTRDKQVLD-K----------CGV-NYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVV 248 (714)
Q Consensus 181 ~~~l~~~~~gs~IliTtR~~~v~~-~----------~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~ 248 (714)
. .+....++.++|+|++...... . .+. ...+++.+|+.+|+.+++...+......... ...|+
T Consensus 162 ~-~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i~ 236 (357)
T 2fna_A 162 A-YAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEVVY 236 (357)
T ss_dssp H-HHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHHH
T ss_pred H-HHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHHHH
Confidence 2 1111124678999999865322 1 111 3579999999999999998754221211211 17899
Q ss_pred HHhcCCChhhHHhhhhhcc-CCHHHHHHH-HHHHhcCCCchHHHHHH-Hhh--hcCchhhHhhhhhccc
Q 042374 249 HYARNNPLALEVLGSSLYQ-KSKQQWEDR-LHNLRLISEPNIYKVLK-ISY--DELNSKEKEMFLDIAC 312 (714)
Q Consensus 249 ~~~~g~Plai~~~~~~l~~-~~~~~w~~~-l~~l~~~~~~~~~~~l~-ls~--~~L~~~~k~~~~~~~~ 312 (714)
+.++|+|+++..++..+.. .+...|... .+... ..+...+. +.+ ..++...+..+..++.
T Consensus 237 ~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~l~~la~ 301 (357)
T 2fna_A 237 EKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----KLILKEFENFLHGREIARKRYLNIMRTLSK 301 (357)
T ss_dssp HHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred HHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 9999999999998876542 233333221 11110 00111111 111 1577888888888887
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=1.5e-13 Score=125.35 Aligned_cols=130 Identities=22% Similarity=0.228 Sum_probs=90.9
Q ss_pred cccceEecccccce--EeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccc
Q 042374 518 GSVTKLILWETAIK--EVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNA 595 (714)
Q Consensus 518 ~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 595 (714)
++++.|++++|.+. .+|..+..+++|++|++++|.+... ..+..+++|++|++++|.+...+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45677777777777 7777777777778888777775443 5677777777777777776665666666777777777
Q ss_pred cCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCcCCCCCCCCEEECCCCCCcccch----hhccCCCCC
Q 042374 596 LGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYALNGCLSSLEYLDLSGNDFESLPA----SIKQLSRLR 671 (714)
Q Consensus 596 l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~ 671 (714)
+++|.++.+|.. ..+..+++|+.|++++|.++.+|. .+..+++|+
T Consensus 102 Ls~N~l~~~~~~-------------------------------~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 150 (168)
T 2ell_A 102 LSGNKLKDISTL-------------------------------EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT 150 (168)
T ss_dssp CBSSSCCSSGGG-------------------------------GGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred ccCCccCcchhH-------------------------------HHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence 777776655420 012345677777777777777765 677788888
Q ss_pred eeccccCcc
Q 042374 672 KLHLCYCDK 680 (714)
Q Consensus 672 ~L~l~~~~~ 680 (714)
+|++++|..
T Consensus 151 ~L~l~~n~~ 159 (168)
T 2ell_A 151 YLDGYDRED 159 (168)
T ss_dssp EETTEETTS
T ss_pred EecCCCCCh
Confidence 888887763
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.44 E-value=2.8e-13 Score=120.75 Aligned_cols=128 Identities=22% Similarity=0.188 Sum_probs=98.0
Q ss_pred ccccceEecccccce--EeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhcccccccc
Q 042374 517 SGSVTKLILWETAIK--EVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYN 594 (714)
Q Consensus 517 ~~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 594 (714)
.++++.|++++|.+. .+|..+..+++|++|++++|.+... ..++.+++|++|++++|.+...+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 356788888888887 7888788888888888888876544 677888888888888888776677777778888888
Q ss_pred ccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCcCCCCCCCCEEECCCCCCcccch----hhccCCCC
Q 042374 595 ALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYALNGCLSSLEYLDLSGNDFESLPA----SIKQLSRL 670 (714)
Q Consensus 595 ~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L 670 (714)
++++|.++.+|.. ..++.+++|++|++++|.++.+|. .+..+++|
T Consensus 94 ~ls~N~i~~~~~~-------------------------------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 142 (149)
T 2je0_A 94 NLSGNKIKDLSTI-------------------------------EPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL 142 (149)
T ss_dssp ECTTSCCCSHHHH-------------------------------GGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred ECCCCcCCChHHH-------------------------------HHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence 8888877654310 012346778888888888887775 67888999
Q ss_pred Ceecccc
Q 042374 671 RKLHLCY 677 (714)
Q Consensus 671 ~~L~l~~ 677 (714)
++|++++
T Consensus 143 ~~L~l~d 149 (149)
T 2je0_A 143 TYLDGYD 149 (149)
T ss_dssp CEETTBC
T ss_pred ccccCCC
Confidence 9988863
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.43 E-value=6.4e-14 Score=157.95 Aligned_cols=147 Identities=19% Similarity=0.223 Sum_probs=67.4
Q ss_pred ccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCC
Q 042374 534 PSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEG 613 (714)
Q Consensus 534 p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 613 (714)
|..+..+.+|+.|+|++|.+. .+|..+..+++|++|+|++|.+. .+|..++++++|++|+|++|.|+.+|..
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~------ 288 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAE------ 288 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSS------
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChh------
Confidence 344455555555555555433 44444445555555555555443 4455555555555555555555444333
Q ss_pred CcccCCCccCCCCCCCceeccCCCcCc----CCCCCCCCEEECCCCCCc-ccchhhccCC-CCCeeccccCccccccCCC
Q 042374 614 TESQLPSSVADTNDLEGLSLYLRNYAL----NGCLSSLEYLDLSGNDFE-SLPASIKQLS-RLRKLHLCYCDKLQSIPEL 687 (714)
Q Consensus 614 ~~~~l~~~~~~~~~L~~L~l~~~~~~~----~~~l~~L~~L~L~~n~l~-~lp~~l~~l~-~L~~L~l~~~~~~~~lp~~ 687 (714)
+..+++|++|+|++|.+.. ++.+++|+.|+|++|.++ .+|..+..+. .+..|++++|.+.+.+|.
T Consensus 289 --------~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~- 359 (727)
T 4b8c_D 289 --------LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH- 359 (727)
T ss_dssp --------GGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-
T ss_pred --------hcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc-
Confidence 4445555555555554433 445666666777777666 3344443321 122355666655544443
Q ss_pred cCcccEeecccC
Q 042374 688 PLSLKWLDASNC 699 (714)
Q Consensus 688 ~~~L~~L~l~~c 699 (714)
.|+.|+++++
T Consensus 360 --~l~~l~l~~n 369 (727)
T 4b8c_D 360 --ERRFIEINTD 369 (727)
T ss_dssp --C---------
T ss_pred --ccceeEeecc
Confidence 3455555544
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.42 E-value=2.9e-15 Score=163.59 Aligned_cols=213 Identities=13% Similarity=0.061 Sum_probs=134.4
Q ss_pred CCCCcccccCCCCCCccccCCcc-cccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEe-
Q 042374 403 EPENLTELSLPYSKVEQSWGGKR-LLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLC- 480 (714)
Q Consensus 403 ~~~~L~~L~l~~~~i~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~- 480 (714)
..++|+.|++++|.++.++.... +++|+.|++++|......+. .++ .+...+..|..++.+++|+.|+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~-----ll~-----~~~~~~~~~~~l~~l~~L~~L~~ 416 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL-----LMR-----ALDPLLYEKETLQYFSTLKAVDP 416 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH-----HHH-----HHCTGGGHHHHHHHHHHHHHHCG
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHH-----HHH-----hcccccCCHHHHHHHHhcccCcc
Confidence 34566666666666666554433 66666666654432111110 000 0112334566677777777777
Q ss_pred cCCCCCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEeccccCCCCCCcEEecCCCCCCcccccc
Q 042374 481 FEGCKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTS 560 (714)
Q Consensus 481 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~ 560 (714)
++.+ .+.. |..+.+.++ .+..++ ...|+.|++++|.++.+|. ++.+++|+.|++++|.+. .+|..
T Consensus 417 l~~n-~~~~---------L~~l~l~~n-~i~~l~--~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~ 481 (567)
T 1dce_A 417 MRAA-YLDD---------LRSKFLLEN-SVLKME--YADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPA 481 (567)
T ss_dssp GGHH-HHHH---------HHHHHHHHH-HHHHHH--HTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGG
T ss_pred hhhc-ccch---------hhhhhhhcc-cccccC--ccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchh
Confidence 4332 1111 111111110 111111 1247788888888888887 899999999999998866 78889
Q ss_pred ccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCcccccc--CccccCCCCCcccCCCccCCCCCCCceeccCCCc
Q 042374 561 ILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIREL--PSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNY 638 (714)
Q Consensus 561 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~--~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 638 (714)
++.+++|+.|++++|.+.+ +| .++.+++|+.|++++|.++.+ |.. +
T Consensus 482 ~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~--------------l---------------- 529 (567)
T 1dce_A 482 LAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQP--------------L---------------- 529 (567)
T ss_dssp GGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGG--------------G----------------
T ss_pred hhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHH--------------H----------------
Confidence 9999999999999998765 67 789999999999999998876 443 2
Q ss_pred CcCCCCCCCCEEECCCCCCcccchhh----ccCCCCCeecc
Q 042374 639 ALNGCLSSLEYLDLSGNDFESLPASI----KQLSRLRKLHL 675 (714)
Q Consensus 639 ~~~~~l~~L~~L~L~~n~l~~lp~~l----~~l~~L~~L~l 675 (714)
+.+++|+.|+|++|.++.+|+.. ..+++|+.|++
T Consensus 530 ---~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 530 ---VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ---GGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ---hcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 33566777777777777665532 34788888754
No 130
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.41 E-value=5.3e-12 Score=132.37 Aligned_cols=247 Identities=13% Similarity=0.058 Sum_probs=147.4
Q ss_pred CCCCcccchhhHHHHHhhhccc--CCCeEEEEEEccCchhHHHHHHHHHHHHhhcc---cceEEeeechhcccccChHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLE--SRDVRIVGIWGMGGIGKTTIASAVFHQISRHF---QGKCFMANVREESNKMGAIHV 129 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~--~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f---~~~~~~~~~~~~~~~~~~~~~ 129 (714)
.+..|+||+++++.+.+++... ....+.+.|+|++|+||||||+.+++.....+ ...+|+. +........+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~----~~~~~~~~~~ 93 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN----TRQIDTPYRV 93 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE----HHHHCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE----CCCCCCHHHH
Confidence 4578999999999999988642 34566899999999999999999999876654 2345555 2223344555
Q ss_pred HHHHHHHHhCCCCCcc-cchhhH-HHHHHHhc--CCcEEEEEeCCCCC-----HHHHHHHhcCCCC-CCCCcEEEEEcCC
Q 042374 130 RDEVISQVLGDKNLKI-GTLVIH-QNIRKRLR--QVKMLIVLDAVHDG-----FTQLESLAGELDK-FTTGSRIIITTRD 199 (714)
Q Consensus 130 ~~~~~~~~~~~~~~~~-~~~~~~-~~l~~~l~--~k~~LlVlDdv~~~-----~~~~~~l~~~l~~-~~~gs~IliTtR~ 199 (714)
...++.++ +...... ...... +.+.+.+. +++.+||+|+++.. ...+..+...+.. ...+..+|+||+.
T Consensus 94 ~~~i~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 94 LADLLESL-DVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHTTTT-SCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 55655543 3221111 112222 55555554 45899999998542 1334444332211 1335567777776
Q ss_pred hhHHHhc------C-CCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhc---CCChhhHHhhhhhc---
Q 042374 200 KQVLDKC------G-VNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYAR---NNPLALEVLGSSLY--- 266 (714)
Q Consensus 200 ~~v~~~~------~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plai~~~~~~l~--- 266 (714)
....... . ....+.+++++.++..+++...+........-..+....+++.++ |.|..+..+.....
T Consensus 173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 5432211 1 125899999999999999988653211111111245677777777 99985443322211
Q ss_pred ---c---CCHHHHHHHHHHHhcCCCchHHHHHHHhhhcCchhhHhhhhhcccc
Q 042374 267 ---Q---KSKQQWEDRLHNLRLISEPNIYKVLKISYDELNSKEKEMFLDIACF 313 (714)
Q Consensus 267 ---~---~~~~~w~~~l~~l~~~~~~~~~~~l~ls~~~L~~~~k~~~~~~~~f 313 (714)
+ -+.+..+.++.... ...+.-.+..++...+..+..++.+
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~ 298 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSI 298 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HhcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 14555665555432 1234455677888777777666643
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=1.3e-13 Score=155.37 Aligned_cols=179 Identities=16% Similarity=0.138 Sum_probs=114.7
Q ss_pred ccceEecccccceEeccccCCCCCCcEEecCCCC----CCccccccccCCCCCCEEEecCCCCCCCCchhhhcccccccc
Q 042374 519 SVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCP----RLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYN 594 (714)
Q Consensus 519 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~----~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 594 (714)
.++.|.|.++.+...+..+....+|..+.+.... .....+..+..+++|+.|++++|.+. .+|..+.++++|++|
T Consensus 174 ~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 174 LTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRL 252 (727)
T ss_dssp ------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCC
T ss_pred ccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEE
Confidence 4556666667776666655444444444433311 12345677889999999999999876 688888899999999
Q ss_pred ccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc----CCCCCCCCEEECCCCCCcccchhhccCCCC
Q 042374 595 ALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL----NGCLSSLEYLDLSGNDFESLPASIKQLSRL 670 (714)
Q Consensus 595 ~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~----~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L 670 (714)
+|++|.|+.+|.. +..+++|+.|+|++|.+.. ++.+++|++|+|++|.++.+|..+.++++|
T Consensus 253 ~Ls~N~l~~lp~~--------------~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L 318 (727)
T 4b8c_D 253 YLNGNSLTELPAE--------------IKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNL 318 (727)
T ss_dssp BCTTSCCSCCCGG--------------GGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTC
T ss_pred EeeCCcCcccChh--------------hhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCc
Confidence 9999999877755 8899999999999999876 567899999999999999999999999999
Q ss_pred CeeccccCccccccCCCcC----cccEeecccCcccccccCccccc
Q 042374 671 RKLHLCYCDKLQSIPELPL----SLKWLDASNCERLQTFPEISSYL 712 (714)
Q Consensus 671 ~~L~l~~~~~~~~lp~~~~----~L~~L~l~~c~~l~~lp~~~~~~ 712 (714)
+.|+|++|++.+.+|..+. .+..|++++|..-..+|..+..+
T Consensus 319 ~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l 364 (727)
T 4b8c_D 319 QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFI 364 (727)
T ss_dssp CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----
T ss_pred cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccccee
Confidence 9999999999888886442 22347788888777788766554
No 132
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.38 E-value=1.3e-11 Score=129.30 Aligned_cols=244 Identities=12% Similarity=0.081 Sum_probs=150.4
Q ss_pred CCCCcccchhhHHHHHhhhccc--CCCeEEEEEEccCchhHHHHHHHHHHHHhhcc------cceEEeeechhcccccCh
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLE--SRDVRIVGIWGMGGIGKTTIASAVFHQISRHF------QGKCFMANVREESNKMGA 126 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~--~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~ 126 (714)
.++.++||+++++++.+++... ....+.+.|+|++|+||||+|+.+++.....+ ...+|+. +....+.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~ 92 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHRETP 92 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTSCSH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcCCCH
Confidence 4578999999999999988542 34566889999999999999999998765431 2344554 3444566
Q ss_pred HHHHHHHHHHHhCCCCCc-ccchhhH-HHHHHHh--cCCcEEEEEeCCCCCH------HHHHHHhcCCCCC--CCCcEEE
Q 042374 127 IHVRDEVISQVLGDKNLK-IGTLVIH-QNIRKRL--RQVKMLIVLDAVHDGF------TQLESLAGELDKF--TTGSRII 194 (714)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~-~~~~~~~-~~l~~~l--~~k~~LlVlDdv~~~~------~~~~~l~~~l~~~--~~gs~Il 194 (714)
..+..+++.++ +..... ....... +.+.+.+ .+++.+||+||++... ..+..+....... ..+..+|
T Consensus 93 ~~~~~~l~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I 171 (387)
T 2v1u_A 93 YRVASAIAEAV-GVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLV 171 (387)
T ss_dssp HHHHHHHHHHH-SCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEE
T ss_pred HHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEE
Confidence 67777777775 332221 1122332 5666666 4568999999997641 1122233322211 3456777
Q ss_pred EEcCChhHH----Hh-c-CC-CeEEecCCCCHHHHHHHHHHhhhh---cCCCChhHHHHHHHHHHHhc---CCChhhH-H
Q 042374 195 ITTRDKQVL----DK-C-GV-NYVYEVEGLEHNKAFELFYRKAFR---QNNYPPDFLGLSLEVVHYAR---NNPLALE-V 260 (714)
Q Consensus 195 iTtR~~~v~----~~-~-~~-~~~~~l~~L~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~i~~~~~---g~Plai~-~ 260 (714)
.||+..... .. . .. ...+.+++++.++..+++...+.. .....+ +....+++.++ |.|-.+. .
T Consensus 172 ~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~ 248 (387)
T 2v1u_A 172 GITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDL 248 (387)
T ss_dssp EECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHH
T ss_pred EEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHH
Confidence 777765221 11 1 11 257899999999999999887532 122222 45677888888 9994332 2
Q ss_pred hhhhh--c---c---CCHHHHHHHHHHHhcCCCchHHHHHHHhhhcCchhhHhhhhhcccc
Q 042374 261 LGSSL--Y---Q---KSKQQWEDRLHNLRLISEPNIYKVLKISYDELNSKEKEMFLDIACF 313 (714)
Q Consensus 261 ~~~~l--~---~---~~~~~w~~~l~~l~~~~~~~~~~~l~ls~~~L~~~~k~~~~~~~~f 313 (714)
+.... . + -+.+.+..+++.... ..+.-++..++.+.+..+..++..
T Consensus 249 l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~-------~~~~~~~~~l~~~~~~~l~a~~~~ 302 (387)
T 2v1u_A 249 LRVAGEIAERRREERVRREHVYSARAEIER-------DRVSEVVRTLPLHAKLVLLSIMML 302 (387)
T ss_dssp HHHHHHHHHHTTCSCBCHHHHHHHHHHHHH-------HHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHHhh-------chHHHHHHcCCHHHHHHHHHHHHH
Confidence 22211 1 1 156667766655421 234556778888888777766644
No 133
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.38 E-value=1.2e-12 Score=119.31 Aligned_cols=135 Identities=24% Similarity=0.301 Sum_probs=96.0
Q ss_pred CCCCCcEEecCCCCCC-ccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccc-cCccccCCCCCcc
Q 042374 539 CLTNLKVLSLSQCPRL-KRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRE-LPSTFEKGEGTES 616 (714)
Q Consensus 539 ~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~~~~~~~~~ 616 (714)
..++|++|++++|.+. +.+|..+..+++|+.|++++|.+... ..+..+++|++|++++|.+.. +|..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~--------- 90 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDML--------- 90 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHH---------
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHH---------
Confidence 3467777777777664 46666667777777777777765443 456666666666666666654 2221
Q ss_pred cCCCccCCCCCCCceeccCCCcCcCCCCCCCCEEECCCCCCcccc--hhhccCCCCCeeccccCccccccC------CCc
Q 042374 617 QLPSSVADTNDLEGLSLYLRNYALNGCLSSLEYLDLSGNDFESLP--ASIKQLSRLRKLHLCYCDKLQSIP------ELP 688 (714)
Q Consensus 617 ~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~l~~~~~~~~lp------~~~ 688 (714)
++.+++|+.|++++|.++.+| ..+..+++|++|++++|++.+..+ ..+
T Consensus 91 ------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l 146 (168)
T 2ell_A 91 ------------------------AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146 (168)
T ss_dssp ------------------------HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC
T ss_pred ------------------------HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC
Confidence 123778889999999999876 678999999999999998764433 146
Q ss_pred CcccEeecccCcccccccCcc
Q 042374 689 LSLKWLDASNCERLQTFPEIS 709 (714)
Q Consensus 689 ~~L~~L~l~~c~~l~~lp~~~ 709 (714)
++|+.|++++| .+..+|+..
T Consensus 147 ~~L~~L~l~~n-~~~~~~~~~ 166 (168)
T 2ell_A 147 PQLTYLDGYDR-EDQEAPDSD 166 (168)
T ss_dssp SSCCEETTEET-TSCBCCSSS
T ss_pred ccCcEecCCCC-Chhhccccc
Confidence 89999999999 567777653
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.35 E-value=2e-12 Score=120.56 Aligned_cols=124 Identities=23% Similarity=0.223 Sum_probs=91.8
Q ss_pred cceEecccccceEeccccCCCCCCcEEecCCCCCCccccc-cccCCCCCCEEEecCCCCCCCCchhhhccccccccccCC
Q 042374 520 VTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRIST-SILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGR 598 (714)
Q Consensus 520 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 598 (714)
-+.++++++.++.+|..+.. +|++|++++|.+....+. .+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 35677777888888876643 888888888876554443 378888888888888887776677888888888888888
Q ss_pred ccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc-----CCCCCCCCEEECCCCCCc
Q 042374 599 TKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL-----NGCLSSLEYLDLSGNDFE 658 (714)
Q Consensus 599 ~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-----~~~l~~L~~L~L~~n~l~ 658 (714)
|.++.++... +..+++|+.|+|++|.+.. ++.+++|++|+|++|.++
T Consensus 88 N~l~~~~~~~-------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKM-------------FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSS-------------STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHH-------------hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 8887766543 5666777777777776654 455667777777777665
No 135
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.33 E-value=4.5e-12 Score=123.78 Aligned_cols=199 Identities=13% Similarity=0.046 Sum_probs=119.6
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
....++||+.+++.+..++..+. ..+.+.|+|++|+||||+|+.+++.....+.... .. ....... ..+.
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~-~~-------~~~~~~~-~~~~ 90 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-TP-------CGVCDNC-REIE 90 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS-SC-------CSCSHHH-HHHH
T ss_pred cHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-CC-------CcccHHH-HHHh
Confidence 34569999999999999886432 2357899999999999999999987654331110 00 0000000 0010
Q ss_pred HHH----hCCCCCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCChhHH-
Q 042374 135 SQV----LGDKNLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDKQVL- 203 (714)
Q Consensus 135 ~~~----~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~~v~- 203 (714)
... ...........+....+.+.+ .+++.+||+||++.. ...++.+...+.....+..+|+||+.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 000 000000001111112222222 346799999999764 245666665554445577888888765321
Q ss_pred H-hcCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHhhhhh
Q 042374 204 D-KCGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVLGSSL 265 (714)
Q Consensus 204 ~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 265 (714)
. .......+++++++.+|..+++...+......-. .+....+++.++|+|..+..+....
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE--PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC--HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 1223468999999999999999888754322111 2567889999999999887765443
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=2.9e-12 Score=117.69 Aligned_cols=130 Identities=17% Similarity=0.080 Sum_probs=72.9
Q ss_pred ccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCC
Q 042374 519 SVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGR 598 (714)
Q Consensus 519 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 598 (714)
+++.|++++|.++.+|......++|++|++++|.+.+. ..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 20 ~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 97 (176)
T 1a9n_A 20 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97 (176)
T ss_dssp SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred CceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC
Confidence 34445555555554433222222555555555554332 3455555555555555554332222335555555555555
Q ss_pred ccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCcCCCCCCCCEEECCCCCCcccchh----hccCCCCCeec
Q 042374 599 TKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYALNGCLSSLEYLDLSGNDFESLPAS----IKQLSRLRKLH 674 (714)
Q Consensus 599 ~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~----l~~l~~L~~L~ 674 (714)
|.+..+|.. ..++.+++|+.|++++|.++.+|.. +..+++|+.|+
T Consensus 98 N~i~~~~~~-------------------------------~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 98 NSLVELGDL-------------------------------DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp CCCCCGGGG-------------------------------GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred CcCCcchhh-------------------------------HhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeC
Confidence 555443320 0123467788888888888888774 78888899998
Q ss_pred cccCccc
Q 042374 675 LCYCDKL 681 (714)
Q Consensus 675 l~~~~~~ 681 (714)
+++|...
T Consensus 147 ~~~n~~~ 153 (176)
T 1a9n_A 147 FQKVKLK 153 (176)
T ss_dssp TEECCHH
T ss_pred CCcCCHH
Confidence 8888743
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.32 E-value=8.5e-12 Score=114.71 Aligned_cols=132 Identities=23% Similarity=0.232 Sum_probs=85.3
Q ss_pred cceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCc
Q 042374 520 VTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRT 599 (714)
Q Consensus 520 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 599 (714)
.+.+++.++.+..+|..+. ++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4566777777777776543 67888888888766544455677788888888887766544455677778888888887
Q ss_pred cccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCcCCCCCCCCEEECCCCCCcccchh-hccCCCCCeeccccC
Q 042374 600 KIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYALNGCLSSLEYLDLSGNDFESLPAS-IKQLSRLRKLHLCYC 678 (714)
Q Consensus 600 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~l~~~ 678 (714)
.++.+|... +.. +++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 87 ~l~~~~~~~-------------~~~-------------------l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 87 KLQSLPNGV-------------FDK-------------------LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCCCCCTTT-------------TTT-------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CccccCHHH-------------hhC-------------------CcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 777665432 333 45555555555566655543 355666666666666
Q ss_pred ccccccC
Q 042374 679 DKLQSIP 685 (714)
Q Consensus 679 ~~~~~lp 685 (714)
++....|
T Consensus 135 ~~~~~~~ 141 (177)
T 2o6r_A 135 PWDCSCP 141 (177)
T ss_dssp CBCCCHH
T ss_pred CeeccCc
Confidence 6554433
No 138
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.30 E-value=3.3e-12 Score=113.80 Aligned_cols=70 Identities=24% Similarity=0.116 Sum_probs=40.9
Q ss_pred cCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCC-CchhhhccccccccccCCccccccCc
Q 042374 537 VGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLEN-FPEILEKMEYLNYNALGRTKIRELPS 606 (714)
Q Consensus 537 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l~~~~~ 606 (714)
++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+... .+..++.+++|++|++++|.++.+|.
T Consensus 60 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 60 LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred hhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 45556666666666665554555555566666666666654431 22556666666666666666655543
No 139
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.29 E-value=8.8e-11 Score=123.09 Aligned_cols=245 Identities=12% Similarity=0.072 Sum_probs=149.3
Q ss_pred CCCCcccchhhHHHHHhhhccc----CCCeEEEEEEccCchhHHHHHHHHHHHHhhcc-cceEEeeechhcccccChHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLE----SRDVRIVGIWGMGGIGKTTIASAVFHQISRHF-QGKCFMANVREESNKMGAIHV 129 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~----~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~ 129 (714)
.++.++||+.+++++.+++... .+..+.+.|+|++|+||||||+.+++...... ...+++. +....+...+
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~~~~~~~ 90 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIYRNFTAI 90 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTCCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccCCCHHHH
Confidence 4578999999999999888641 22234899999999999999999999876542 3455555 3444556677
Q ss_pred HHHHHHHHhCCCCCc-ccchhhH-HHHHHHhc--CCcEEEEEeCCCCC-HHHHHHHhcCCCCCC----CCcEEEEEcCCh
Q 042374 130 RDEVISQVLGDKNLK-IGTLVIH-QNIRKRLR--QVKMLIVLDAVHDG-FTQLESLAGELDKFT----TGSRIIITTRDK 200 (714)
Q Consensus 130 ~~~~~~~~~~~~~~~-~~~~~~~-~~l~~~l~--~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~----~gs~IliTtR~~ 200 (714)
...++..+ +..... ....... +.+.+.+. +++.+||+|+++.. ......+...+.... .+..||++|+..
T Consensus 91 ~~~l~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 91 IGEIARSL-NIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHHHHHT-TCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHHHHHh-CccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 77777664 332221 1122222 55555553 66899999999764 244555544443211 366788887766
Q ss_pred hHHHhcC-------CCeEEecCCCCHHHHHHHHHHhhhh---cCCCChhHHHHHHHHHHHh---------cCCChhhHHh
Q 042374 201 QVLDKCG-------VNYVYEVEGLEHNKAFELFYRKAFR---QNNYPPDFLGLSLEVVHYA---------RNNPLALEVL 261 (714)
Q Consensus 201 ~v~~~~~-------~~~~~~l~~L~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~i~~~~---------~g~Plai~~~ 261 (714)
....... ....+.+++++.++..+++...+.. ..... .+....+++.+ .|.|..+..+
T Consensus 170 ~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~ 246 (389)
T 1fnn_A 170 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDI 246 (389)
T ss_dssp HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHH
T ss_pred hHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 4332211 1236999999999999999887643 12222 25678888999 7887655443
Q ss_pred hhhhc------c---CCHHHHHHHHHHHhcCCCchHHHHHHHhhhcCchhhHhhhhhccccc
Q 042374 262 GSSLY------Q---KSKQQWEDRLHNLRLISEPNIYKVLKISYDELNSKEKEMFLDIACFF 314 (714)
Q Consensus 262 ~~~l~------~---~~~~~w~~~l~~l~~~~~~~~~~~l~ls~~~L~~~~k~~~~~~~~fp 314 (714)
..... + -+.+....++....... +.-.+..|+.+.+..+..++.+.
T Consensus 247 l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~-------~~~~l~~l~~~~~~~L~~l~~~~ 301 (389)
T 1fnn_A 247 LYRSAYAAQQNGRKHIAPEDVRKSSKEVLFGI-------SEEVLIGLPLHEKLFLLAIVRSL 301 (389)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHHSCCC-------CHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHhhhh-------HHHHHHcCCHHHHHHHHHHHHHH
Confidence 32211 1 13333344433332111 12234567777777777666554
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.29 E-value=1.4e-11 Score=114.63 Aligned_cols=122 Identities=18% Similarity=0.129 Sum_probs=71.0
Q ss_pred ceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCcc
Q 042374 521 TKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTK 600 (714)
Q Consensus 521 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 600 (714)
+.++++++.++.+|..+. ++|++|++++|.+. .+|..+.++++|+.|++++|.+....+..|.++++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 345566666666666543 46777777776543 555666667777777777766655555566667777777777776
Q ss_pred ccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc-----CCCCCCCCEEECCCCCCc
Q 042374 601 IRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL-----NGCLSSLEYLDLSGNDFE 658 (714)
Q Consensus 601 l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-----~~~l~~L~~L~L~~n~l~ 658 (714)
++.++... +..+++|+.|+|++|.+.. +..+++|+.|+|++|.+.
T Consensus 90 l~~i~~~~-------------f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRT-------------FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTT-------------TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHH-------------hCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 66555432 4444445544444444433 233455555555555443
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.26 E-value=4.5e-11 Score=111.31 Aligned_cols=109 Identities=21% Similarity=0.156 Sum_probs=67.3
Q ss_pred cccEEeccCCccccccCC--CCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEeC
Q 042374 428 SSKFIDLSHSQYLIRMPD--LSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINCG 505 (714)
Q Consensus 428 ~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 505 (714)
++++|++++|.+....+. |..+++|++|+|++|......|..+..+++|++|++++|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N--------------------- 88 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN--------------------- 88 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC---------------------
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC---------------------
Confidence 455555555555444432 556666666666666554444556666666666666653
Q ss_pred CCcCCCcccccccccceEecccccceEeccc-cCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCC
Q 042374 506 GCVNLTEFPQISGSVTKLILWETAIKEVPSS-VGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLEN 580 (714)
Q Consensus 506 ~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 580 (714)
.++.++.. +..+++|++|++++|.+.+..|..+..+++|++|++++|.+...
T Consensus 89 -----------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 89 -----------------------KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp -----------------------CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred -----------------------cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 33333333 66677777777777777666677777777777777777765543
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.25 E-value=2.3e-11 Score=113.20 Aligned_cols=110 Identities=19% Similarity=0.152 Sum_probs=98.5
Q ss_pred ccccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhcccccccccc
Q 042374 517 SGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNAL 596 (714)
Q Consensus 517 ~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 596 (714)
..+++.|++++|.++.+|..+..+++|++|++++|.+....+..|.++++|++|++++|.+....+..|..+++|++|++
T Consensus 30 ~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 34788889999999999988999999999999999988777778999999999999999988777778999999999999
Q ss_pred CCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcC
Q 042374 597 GRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYA 639 (714)
Q Consensus 597 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 639 (714)
++|.++.+|... +..+++|+.|++++|.+.
T Consensus 110 ~~N~l~~~~~~~-------------~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 110 HGNDISVVPEGA-------------FNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CSSCCCBCCTTT-------------TTTCTTCCEEECCSSCEE
T ss_pred CCCCCCeeChhh-------------hhcCccccEEEeCCCCee
Confidence 999999888754 778999999999999854
No 143
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.21 E-value=4e-10 Score=107.98 Aligned_cols=186 Identities=13% Similarity=0.068 Sum_probs=113.8
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
....++||+..++.+.+++.... .+.+.|+|++|+|||++|+.+++.+........++... .+....... ..+.+
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~ 89 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN--ASDERGIDV-VRHKI 89 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE--TTCTTCHHH-HHHHH
T ss_pred CHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec--cccccChHH-HHHHH
Confidence 34568999999999999986542 33489999999999999999998764432222222210 111112111 11222
Q ss_pred HHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCChhHH-H-hcCCCeE
Q 042374 135 SQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDKQVL-D-KCGVNYV 211 (714)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~~v~-~-~~~~~~~ 211 (714)
........ .-.+++.+||+||++.. ....+.+...+.....+..+|+||+..... . .......
T Consensus 90 ~~~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~ 155 (226)
T 2chg_A 90 KEFARTAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (226)
T ss_dssp HHHHTSCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHHhcccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCce
Confidence 11111100 01256889999999765 233445544444345677888888765321 1 1222348
Q ss_pred EecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHh
Q 042374 212 YEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVL 261 (714)
Q Consensus 212 ~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 261 (714)
+++++++.++..+++.+.+......-. .+....+++.++|+|..+..+
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 156 FRFKPVPKEAMKKRLLEICEKEGVKIT--EDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCCBC--HHHHHHHHHHHTTCHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999999887643222111 246678889999999865443
No 144
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.20 E-value=4.2e-11 Score=109.83 Aligned_cols=115 Identities=15% Similarity=0.099 Sum_probs=86.7
Q ss_pred cccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEeCCCcCCCcccccccccceEecccccceEeccccCCCCCCcEEec
Q 042374 469 SIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEVPSSVGCLTNLKVLSL 548 (714)
Q Consensus 469 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l 548 (714)
.+.++.+|+.|++++|.. ..+|. +....++|+.|++++|.++.+ ..+..+++|++|++
T Consensus 14 ~~~~~~~L~~L~l~~n~l-~~i~~--------------------~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~L 71 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKI-PVIEN--------------------LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLV 71 (176)
T ss_dssp EEECTTSCEEEECTTSCC-CSCCC--------------------GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEEC
T ss_pred hcCCcCCceEEEeeCCCC-chhHH--------------------hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEEC
Confidence 456677888888888643 23322 122233677778888888888 67889999999999
Q ss_pred CCCCCCccccccccCCCCCCEEEecCCCCCCCCch--hhhccccccccccCCccccccCc
Q 042374 549 SQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPE--ILEKMEYLNYNALGRTKIRELPS 606 (714)
Q Consensus 549 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~ 606 (714)
++|.+....+..+..+++|++|++++|.+ ..+|. .+..+++|++|++++|.+..+|.
T Consensus 72 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~ 130 (176)
T 1a9n_A 72 NNNRICRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKH 130 (176)
T ss_dssp CSSCCCEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred CCCcccccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHh
Confidence 99987654334458899999999999986 44665 78899999999999999887765
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.19 E-value=6.4e-11 Score=120.83 Aligned_cols=180 Identities=13% Similarity=0.022 Sum_probs=91.3
Q ss_pred cccccEEeccCCccccccC-CCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCC---CCccCC-CC-CCCCC
Q 042374 426 LLSSKFIDLSHSQYLIRMP-DLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKS---LRSFPS-NL-HFVCP 499 (714)
Q Consensus 426 ~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~---~~~~~~-~~-~~~~L 499 (714)
+.+|+.+++.. .+....+ .|.++++|+.|++.+|......+..|..+.++..+.+..... ...+.. .+ .+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 67788888777 4443333 477788888888877655444445666666666655543110 000000 00 12222
Q ss_pred c-EEEeCCCcCCCc----------------------------ccccccccceEecccccceEeccc-cCCCCCCcEEecC
Q 042374 500 V-TINCGGCVNLTE----------------------------FPQISGSVTKLILWETAIKEVPSS-VGCLTNLKVLSLS 549 (714)
Q Consensus 500 ~-~L~l~~~~~l~~----------------------------~~~~~~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~ 549 (714)
+ .+.+.....+.. +.....+|+.+++.+|.++.+|.. |..+.+|+.|++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 2 222221111100 001134566666666666666554 5666666666666
Q ss_pred CCCCCccccccccCCCCCC-EEEecCCCCCCCCchhhhccccccccccCCccccccCccc
Q 042374 550 QCPRLKRISTSILKLKSLQ-NLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTF 608 (714)
Q Consensus 550 ~~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~ 608 (714)
+| +...-+..|.++++|+ .+.+.+ .+...-+..|.++++|+.++++.|.++.++...
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~a 316 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDEL 316 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTT
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhh
Confidence 64 2222233455666666 666655 222222345666666666666666666655543
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.18 E-value=6.1e-13 Score=124.88 Aligned_cols=112 Identities=22% Similarity=0.194 Sum_probs=67.2
Q ss_pred cceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccc
Q 042374 529 AIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTF 608 (714)
Q Consensus 529 ~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~ 608 (714)
.++.+|..+..+++|++|++++|.+.. +| .+..+++|+.|++++|.+. .+|..+..+++|++|++++|.++.+|.
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~~-- 110 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSG-- 110 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHHH--
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCCc--
Confidence 344555566777777777777776544 55 6677777777777777654 466666667777777777777665541
Q ss_pred cCCCCCcccCCCccCCCCCCCceeccCCCcCc------CCCCCCCCEEECCCCCCc
Q 042374 609 EKGEGTESQLPSSVADTNDLEGLSLYLRNYAL------NGCLSSLEYLDLSGNDFE 658 (714)
Q Consensus 609 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~------~~~l~~L~~L~L~~n~l~ 658 (714)
+..+++|+.|++++|.+.. +..+++|++|++++|.++
T Consensus 111 -------------~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 111 -------------IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp -------------HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred -------------cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 3444455555555544432 234445555555555444
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.16 E-value=3e-13 Score=126.98 Aligned_cols=142 Identities=23% Similarity=0.175 Sum_probs=115.2
Q ss_pred CCCCCCcEEecCCCCCCccccc------cccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCC
Q 042374 538 GCLTNLKVLSLSQCPRLKRIST------SILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKG 611 (714)
Q Consensus 538 ~~l~~L~~L~l~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~ 611 (714)
....+++.++++.+.+.+..|. .+..+++|++|++++|.+.. +| .+..+++|++|++++|.++.+|..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~---- 88 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENL---- 88 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSH----
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccch----
Confidence 3445566666666655555554 89999999999999998665 77 899999999999999999877654
Q ss_pred CCCcccCCCccCCCCCCCceeccCCCcCc---CCCCCCCCEEECCCCCCcccch--hhccCCCCCeeccccCccccccCC
Q 042374 612 EGTESQLPSSVADTNDLEGLSLYLRNYAL---NGCLSSLEYLDLSGNDFESLPA--SIKQLSRLRKLHLCYCDKLQSIPE 686 (714)
Q Consensus 612 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~---~~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~l~~~~~~~~lp~ 686 (714)
+..+++|+.|++++|.+.. ++.+++|+.|++++|.++.+|. .+..+++|++|++++|++.+..|.
T Consensus 89 ----------~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 89 ----------DAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp ----------HHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred ----------hhcCCcCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 6667899999999999877 4567899999999999998775 788999999999999998766553
Q ss_pred -------------CcCcccEee
Q 042374 687 -------------LPLSLKWLD 695 (714)
Q Consensus 687 -------------~~~~L~~L~ 695 (714)
.+++|+.|+
T Consensus 159 ~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 159 NNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp TTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccchHHHHHHHHHhCCCcEEEC
Confidence 246788876
No 148
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.14 E-value=2.7e-10 Score=104.53 Aligned_cols=92 Identities=26% Similarity=0.256 Sum_probs=77.7
Q ss_pred ccccceEecccccceEeccc-cCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccc
Q 042374 517 SGSVTKLILWETAIKEVPSS-VGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNA 595 (714)
Q Consensus 517 ~~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 595 (714)
..+++.|++++|.+..+|.. +..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 35678888888999888765 68999999999999987665556678999999999999988766666789999999999
Q ss_pred cCCccccccCccc
Q 042374 596 LGRTKIRELPSTF 608 (714)
Q Consensus 596 l~~~~l~~~~~~~ 608 (714)
+++|.++.+|..+
T Consensus 107 l~~N~l~~~~~~~ 119 (177)
T 2o6r_A 107 LDTNQLKSVPDGI 119 (177)
T ss_dssp CCSSCCSCCCTTT
T ss_pred CcCCcceEeCHHH
Confidence 9999998777653
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.10 E-value=2.6e-10 Score=116.27 Aligned_cols=238 Identities=14% Similarity=0.092 Sum_probs=114.5
Q ss_pred CCCcccccCCCCCCccccCCc-ccccccEEeccCCccccccCCCCC--------CCCCcEEecCCCCCCccCCccccCCC
Q 042374 404 PENLTELSLPYSKVEQSWGGK-RLLSSKFIDLSHSQYLIRMPDLSE--------APNLERINLLNCTNLVSVPSSIQNFN 474 (714)
Q Consensus 404 ~~~L~~L~l~~~~i~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~--------l~~L~~L~L~~~~~~~~lp~~~~~l~ 474 (714)
+.+|+.|+|++|++....... .++.++.+.+..+.+. ...|.+ +++|+.|+|.. .....-+.+|..++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~--~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~ 124 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVP--AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCD 124 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEEC--TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccC--HHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCc
Confidence 567888888888887222211 1333455555555211 113667 88888888887 33333335688888
Q ss_pred CCCEEecCCCCCCCccCCCCC-CCCCcEEEeCCCcCCCcccccccccceEecccccceEe-ccccCCCCCCc-EEecCCC
Q 042374 475 HLSMLCFEGCKSLRSFPSNLH-FVCPVTINCGGCVNLTEFPQISGSVTKLILWETAIKEV-PSSVGCLTNLK-VLSLSQC 551 (714)
Q Consensus 475 ~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~l-p~~~~~l~~L~-~L~l~~~ 551 (714)
+|+.+++.+|.....-+..+. +.++..+....... + .....+ +..+..+..|+ .+.+...
T Consensus 125 ~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~--------------~---~~~~~i~~~~f~~~~~L~~~i~~~~~ 187 (329)
T 3sb4_A 125 NLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDA--------------Y---RFKNRWEHFAFIEGEPLETTIQVGAM 187 (329)
T ss_dssp TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHH--------------H---HTSTTTTTSCEEESCCCEEEEEECTT
T ss_pred ccceEEcCCCCccccchhhhcCCCceEEecCcchhh--------------h---hccccccccccccccccceeEEecCC
Confidence 888888887654322222221 22222221111000 0 000000 01122233333 2222221
Q ss_pred CCCcccccc----ccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCC
Q 042374 552 PRLKRISTS----ILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTND 627 (714)
Q Consensus 552 ~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 627 (714)
. .++.. .....++..+.+.++-....+......+++|+.+++++|.++.+|... |.++.+
T Consensus 188 ~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~a-------------F~~~~~ 251 (329)
T 3sb4_A 188 G---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFT-------------FAQKKY 251 (329)
T ss_dssp C---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTT-------------TTTCTT
T ss_pred C---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhh-------------hhCCCC
Confidence 1 11111 112334444544443111111111123566666666666666666554 666666
Q ss_pred CCceeccCCCcCc-----CCCCCCCC-EEECCCCCCcccc-hhhccCCCCCeeccccCc
Q 042374 628 LEGLSLYLRNYAL-----NGCLSSLE-YLDLSGNDFESLP-ASIKQLSRLRKLHLCYCD 679 (714)
Q Consensus 628 L~~L~l~~~~~~~-----~~~l~~L~-~L~L~~n~l~~lp-~~l~~l~~L~~L~l~~~~ 679 (714)
|+.|++..| +.. |..+++|+ .+++.+ .++.++ .++.+|++|+.|++++|.
T Consensus 252 L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 252 LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSC
T ss_pred CCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCc
Confidence 666666665 332 45566666 666666 566554 356666777777766554
No 150
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.08 E-value=1.1e-09 Score=111.52 Aligned_cols=185 Identities=16% Similarity=0.194 Sum_probs=113.1
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhc-cc-ceEEeeechhcccccChHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRH-FQ-GKCFMANVREESNKMGAIHVRDE 132 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~-f~-~~~~~~~~~~~~~~~~~~~~~~~ 132 (714)
....++|++..++.+.+++..+. .+.+.|+|++|+|||++|+.+++.+... +. ..+++. .+.... ....++
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~----~~~~~~-~~~i~~ 91 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN----ASDDRG-IDVVRN 91 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC----TTSCCS-HHHHHT
T ss_pred CHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec----CccccC-hHHHHH
Confidence 34569999999999999986543 2238899999999999999999976432 21 223332 111111 112222
Q ss_pred HHHHHhCCCCCcccchhhHHHHHHHh-cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCChhH-HH-hcCC
Q 042374 133 VISQVLGDKNLKIGTLVIHQNIRKRL-RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDKQV-LD-KCGV 208 (714)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~~v-~~-~~~~ 208 (714)
++..+.... ..+ .+++.++|+||++.. ....+.+...+.....++.+|+||+...- .. ....
T Consensus 92 ~~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr 157 (323)
T 1sxj_B 92 QIKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ 157 (323)
T ss_dssp HHHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhh
Confidence 222211000 001 345889999999864 23344444444334456778888765431 11 1233
Q ss_pred CeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChh-hHHhh
Q 042374 209 NYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLA-LEVLG 262 (714)
Q Consensus 209 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla-i~~~~ 262 (714)
...+++.+++.++..+++...+......-. .+.+..+++.++|.|.. +..+.
T Consensus 158 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 158 CAILRYSKLSDEDVLKRLLQIIKLEDVKYT--NDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCCBC--HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ceEEeecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHHHH
Confidence 458999999999999999887643321111 15677899999999954 44443
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.06 E-value=4.3e-10 Score=102.21 Aligned_cols=87 Identities=20% Similarity=0.155 Sum_probs=69.1
Q ss_pred ccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCC
Q 042374 519 SVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGR 598 (714)
Q Consensus 519 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 598 (714)
..+.++++++.++.+|..+. ++|++|++++|.+.+..|..+.++++|++|++++|.+....+..|..+++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 45678888888888887663 7888999998887777777788888888888888887665555678888888888888
Q ss_pred ccccccCcc
Q 042374 599 TKIRELPST 607 (714)
Q Consensus 599 ~~l~~~~~~ 607 (714)
|.++.+|..
T Consensus 88 N~l~~~~~~ 96 (170)
T 3g39_A 88 NQLKSIPRG 96 (170)
T ss_dssp SCCCCCCTT
T ss_pred CccCEeCHH
Confidence 888777654
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.04 E-value=5.7e-10 Score=101.72 Aligned_cols=85 Identities=19% Similarity=0.174 Sum_probs=64.0
Q ss_pred ceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCcc
Q 042374 521 TKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTK 600 (714)
Q Consensus 521 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 600 (714)
+.++++++.+..+|..+. ++|+.|++++|.+.+..|..+.++++|+.|++++|.+....+..|.++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 567777788888887664 788888888888776667778888888888888887665444456778888888888888
Q ss_pred ccccCcc
Q 042374 601 IRELPST 607 (714)
Q Consensus 601 l~~~~~~ 607 (714)
++.+|..
T Consensus 93 l~~l~~~ 99 (174)
T 2r9u_A 93 LKSIPRG 99 (174)
T ss_dssp CCCCCTT
T ss_pred cceeCHH
Confidence 7766654
No 153
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.02 E-value=8.2e-09 Score=102.14 Aligned_cols=169 Identities=8% Similarity=0.002 Sum_probs=103.8
Q ss_pred cccchhhHHHHHhhhcc--cCCCeEEEEEEccCchhHHHHHHHHHHHHhhccc-------ceEEeeechhcccccChHHH
Q 042374 59 FVGLNSRIEEVKSLLCL--ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQ-------GKCFMANVREESNKMGAIHV 129 (714)
Q Consensus 59 ~vGr~~~~~~l~~~l~~--~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~-------~~~~~~~~~~~~~~~~~~~~ 129 (714)
+.|||+|++++...|.. ..+....+.|+|++|+|||++|+.+++++..... ..+++. +....+...+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN----c~~~~t~~~~ 97 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID----ALELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE----TTCCC--HHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe----ccccCCHHHH
Confidence 78999999999888864 2456778899999999999999999998754221 244554 3444566678
Q ss_pred HHHHHHHHhCCCCCcccchhhHHHHHHHh---cCCcEEEEEeCCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCChh---
Q 042374 130 RDEVISQVLGDKNLKIGTLVIHQNIRKRL---RQVKMLIVLDAVHDG--FTQLESLAGELDKFTTGSRIIITTRDKQ--- 201 (714)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~--~~~~~~l~~~l~~~~~gs~IliTtR~~~--- 201 (714)
+..++.++.|.........+.++.+.+.+ .++++++|+|+++.. .+.+..+............||.++...+
T Consensus 98 ~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 98 YEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp HHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccch
Confidence 88888887665322222222333333332 456799999999764 1333333321101111223344443321
Q ss_pred --H----HHhcCCCeEEecCCCCHHHHHHHHHHhhhh
Q 042374 202 --V----LDKCGVNYVYEVEGLEHNKAFELFYRKAFR 232 (714)
Q Consensus 202 --v----~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~ 232 (714)
+ ...+ ....+.+++++.+|..+++.+++..
T Consensus 178 ~~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 178 EQINIMPSLKA-HFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp HHHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred hhcchhhhccC-CceEEEeCCCCHHHHHHHHHHHHHh
Confidence 1 1111 1257899999999999999888743
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.99 E-value=3.1e-08 Score=103.04 Aligned_cols=37 Identities=5% Similarity=0.118 Sum_probs=18.3
Q ss_pred CCCCCCCCEEECCCCCCcccch-hhccCCCCCeeccccCc
Q 042374 641 NGCLSSLEYLDLSGNDFESLPA-SIKQLSRLRKLHLCYCD 679 (714)
Q Consensus 641 ~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~~~ 679 (714)
+..+++|+.+.|.. +++.++. ++.++ +|+.+.+.+|.
T Consensus 319 F~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 319 LGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCSS
T ss_pred hcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCCC
Confidence 34445555555533 2444432 44555 56666665554
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.98 E-value=2.9e-08 Score=103.31 Aligned_cols=142 Identities=9% Similarity=0.036 Sum_probs=101.9
Q ss_pred ccceEecccccceEeccc-cCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCC-----CCCchhhhcccccc
Q 042374 519 SVTKLILWETAIKEVPSS-VGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDL-----ENFPEILEKMEYLN 592 (714)
Q Consensus 519 ~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~l~~l~~L~ 592 (714)
+|+.+.+.. .++.++.. |.+ .+|+.+.+..+ +...-...|.+|++|+.+.+.++... ..-+..|.++++|+
T Consensus 227 ~L~~l~l~~-~l~~I~~~aF~~-~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~ 303 (401)
T 4fdw_A 227 QLKTIEIPE-NVSTIGQEAFRE-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLA 303 (401)
T ss_dssp TCCCEECCT-TCCEECTTTTTT-CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCC
T ss_pred CCCEEecCC-CccCcccccccc-CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCC
Confidence 455666654 35667655 444 78999999653 33333557889999999999887543 12346788999999
Q ss_pred ccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc-----CCCCCCCCEEECCCCCCcccch-hhcc
Q 042374 593 YNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL-----NGCLSSLEYLDLSGNDFESLPA-SIKQ 666 (714)
Q Consensus 593 ~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~lp~-~l~~ 666 (714)
.+.+. +.++.++... |.++.+|+.+.|..+ +.. |..+ +|+.+++.+|.+..++. .+.+
T Consensus 304 ~l~l~-~~i~~I~~~a-------------F~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~ 367 (401)
T 4fdw_A 304 RFEIP-ESIRILGQGL-------------LGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYG 367 (401)
T ss_dssp EECCC-TTCCEECTTT-------------TTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCC
T ss_pred eEEeC-CceEEEhhhh-------------hcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccC
Confidence 99998 4577777665 888999999999655 333 6667 99999999998887654 4556
Q ss_pred CC-CCCeeccccCc
Q 042374 667 LS-RLRKLHLCYCD 679 (714)
Q Consensus 667 l~-~L~~L~l~~~~ 679 (714)
++ +++.|.+-.+.
T Consensus 368 ~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 368 FPDDITVIRVPAES 381 (401)
T ss_dssp SCTTCCEEEECGGG
T ss_pred CCCCccEEEeCHHH
Confidence 63 67777776554
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.95 E-value=2.6e-09 Score=97.31 Aligned_cols=100 Identities=16% Similarity=0.177 Sum_probs=71.2
Q ss_pred CcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCcc
Q 042374 543 LKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSV 622 (714)
Q Consensus 543 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~ 622 (714)
-+.+++++|.+ +.+|..+. ++|+.|++++|.+.+..|..|.++++|++|++++|.++.+|... +
T Consensus 14 ~~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~-------------~ 77 (174)
T 2r9u_A 14 QTLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGV-------------F 77 (174)
T ss_dssp SSEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-------------T
T ss_pred CcEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhH-------------h
Confidence 36888888764 66777664 78999999999887777788899999999999999988877653 4
Q ss_pred CCCCCCCceeccCCCcCc-----CCCCCCCCEEECCCCCCc
Q 042374 623 ADTNDLEGLSLYLRNYAL-----NGCLSSLEYLDLSGNDFE 658 (714)
Q Consensus 623 ~~~~~L~~L~l~~~~~~~-----~~~l~~L~~L~L~~n~l~ 658 (714)
..+++|+.|+|++|.+.. ++.+++|+.|+|++|.+.
T Consensus 78 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 78 DKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 556666666666655543 334555555555555554
No 157
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=98.91 E-value=1.3e-09 Score=96.53 Aligned_cols=53 Identities=40% Similarity=0.686 Sum_probs=48.9
Q ss_pred CCCEEEeEeeccCccccccccCchHHHHHHHHhhC-hhHHHHHHHHHHHhccCC
Q 042374 2 NGQIVIPVFYHVDPSDVRKQSGSFGEAFVEYEKNF-PHKVQKWRDALTEASNST 54 (714)
Q Consensus 2 ~~~~~~pv~~~v~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 54 (714)
.|+.|+||||+|+|++||+|+|.|+++|.+++.+. .+++++|+.|+.++++.+
T Consensus 94 ~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~ 147 (176)
T 3jrn_A 94 GSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLS 147 (176)
T ss_dssp TSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSC
T ss_pred CCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhccc
Confidence 58999999999999999999999999999998874 388999999999999875
No 158
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.90 E-value=4.7e-09 Score=95.31 Aligned_cols=101 Identities=21% Similarity=0.196 Sum_probs=72.5
Q ss_pred CCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCc
Q 042374 542 NLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSS 621 (714)
Q Consensus 542 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~ 621 (714)
+.+.+++++|.+ ..+|..+. ++|+.|++++|.+.+..|..|.++++|++|++++|.++.+|...
T Consensus 10 ~~~~l~~s~n~l-~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~------------- 73 (170)
T 3g39_A 10 SGTTVDCSGKSL-ASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV------------- 73 (170)
T ss_dssp ETTEEECTTSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT-------------
T ss_pred CCCEEEeCCCCc-CccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhh-------------
Confidence 357888988765 45776653 78999999999887777788889999999999999988877654
Q ss_pred cCCCCCCCceeccCCCcCc-----CCCCCCCCEEECCCCCCc
Q 042374 622 VADTNDLEGLSLYLRNYAL-----NGCLSSLEYLDLSGNDFE 658 (714)
Q Consensus 622 ~~~~~~L~~L~l~~~~~~~-----~~~l~~L~~L~L~~n~l~ 658 (714)
+..+++|+.|+|++|.+.. ++.+++|+.|+|++|.++
T Consensus 74 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 74 FDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5566666666666665544 344556666666666544
No 159
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=98.87 E-value=1.1e-09 Score=98.62 Aligned_cols=53 Identities=40% Similarity=0.838 Sum_probs=49.1
Q ss_pred CCCEEEeEeeccCccccccccCchHHHHHHHHhhCh-hHHHHHHHHHHHhccCC
Q 042374 2 NGQIVIPVFYHVDPSDVRKQSGSFGEAFVEYEKNFP-HKVQKWRDALTEASNST 54 (714)
Q Consensus 2 ~~~~~~pv~~~v~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 54 (714)
.+++|+||||+|+|++||+|+|.|+++|.+++.++. +++++|+.|+.++++++
T Consensus 122 ~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~ls 175 (204)
T 3ozi_A 122 PRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLK 175 (204)
T ss_dssp TTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSC
T ss_pred CCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccC
Confidence 478999999999999999999999999999998765 78999999999999875
No 160
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.87 E-value=1.6e-08 Score=103.01 Aligned_cols=183 Identities=16% Similarity=0.132 Sum_probs=111.3
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcc-c-ceEEeeechhcccccChHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHF-Q-GKCFMANVREESNKMGAIHVRDE 132 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f-~-~~~~~~~~~~~~~~~~~~~~~~~ 132 (714)
....++|++..++.+.+++..+. ...+.++|++|+||||+|+.+++.+.... . ..+.+. .+..... ...++
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~----~~~~~~~-~~~~~ 95 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN----ASDERGI-NVIRE 95 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE----TTCHHHH-HTTHH
T ss_pred CHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee----ccccCch-HHHHH
Confidence 45679999999999999886542 33489999999999999999998764322 1 122222 1110000 00111
Q ss_pred HHHHHhCCCCCcccchhhHHHHHHHh-cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCChhH-HHh-cCC
Q 042374 133 VISQVLGDKNLKIGTLVIHQNIRKRL-RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDKQV-LDK-CGV 208 (714)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~~v-~~~-~~~ 208 (714)
.+...... ..+ .+++.++|+||++.. ....+.+...+.....++++|+||..... ... ...
T Consensus 96 ~~~~~~~~---------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 96 KVKEFART---------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp HHHHHHHS---------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred HHHHHHhh---------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh
Confidence 11110000 001 256789999999765 24455555554444567788888876531 111 112
Q ss_pred CeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHh
Q 042374 209 NYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVL 261 (714)
Q Consensus 209 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 261 (714)
...+++.+++.++..+++...+......- ..+....+++.++|.|..+..+
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~g~~r~~~~~ 211 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGLEL--TEEGLQAILYIAEGDMRRAINI 211 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTCEE--CHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHCCCCHHHHHHH
Confidence 34789999999999999988764322111 1256778889999999865443
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.83 E-value=3.2e-07 Score=95.84 Aligned_cols=304 Identities=11% Similarity=0.043 Sum_probs=153.7
Q ss_pred eeeeCHHHHhcccCceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCCCCCCCCCC--CCCCcccccCCCC
Q 042374 338 DLHLSPQAFAKMSNLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYPLKTLPFDF--EPENLTELSLPYS 415 (714)
Q Consensus 338 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~ 415 (714)
...++..+|..+.+|+.+.+..+ +.. +.+....-..+|+.+.+..+ +..++... .+.+|+.+.+..+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~---------I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~ 127 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VRE---------IGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM 127 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCE---------ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccC---------cchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc
Confidence 34578889999999988887532 211 11111111124555555332 33333222 4455555555433
Q ss_pred CCccccCCcc--cccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCCCCCCCccCCC
Q 042374 416 KVEQSWGGKR--LLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEGCKSLRSFPSN 493 (714)
Q Consensus 416 ~i~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~ 493 (714)
+..+....+ +..+......... ......|.++.+|+.+.+..+. ...-...|.++.+|+.+.+..+ ++.++..
T Consensus 128 -l~~i~~~aF~~~~~~~~~~~~~~~-~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~ 202 (394)
T 4fs7_A 128 -LKSIGVEAFKGCDFKEITIPEGVT-VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN--LKIIRDY 202 (394)
T ss_dssp -CCEECTTTTTTCCCSEEECCTTCC-EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT--CCEECTT
T ss_pred -eeeecceeeecccccccccCcccc-ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC--ceEeCch
Confidence 333332222 2222222111111 1111246777777777776531 2122245666777777776543 2333222
Q ss_pred C--CCCCCcEEEeCCC-cCCCcccccccccceEecccccceEecc-ccCCCCCCcEEecCCCCCCccccccccCCCCCCE
Q 042374 494 L--HFVCPVTINCGGC-VNLTEFPQISGSVTKLILWETAIKEVPS-SVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQN 569 (714)
Q Consensus 494 ~--~~~~L~~L~l~~~-~~l~~~~~~~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 569 (714)
. .+..|+.+.+... ..+........+|+.+.+..+ +..+.. .+..+.+|+.+.+..+. .......+..+..|+.
T Consensus 203 ~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~ 280 (394)
T 4fs7_A 203 CFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKK 280 (394)
T ss_dssp TTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCE
T ss_pred hhccccccceeecCCCceEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCc-ceeeccccccccccce
Confidence 1 1333333332211 000111111224455544422 333433 35667777777776542 2233345666777777
Q ss_pred EEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc-----CCCC
Q 042374 570 LYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL-----NGCL 644 (714)
Q Consensus 570 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-----~~~l 644 (714)
+......+. ...+..+.+|+.+.+..+ ++.++... +.++.+|+.+++..+ +.. +.++
T Consensus 281 ~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~a-------------F~~c~~L~~i~lp~~-v~~I~~~aF~~c 342 (394)
T 4fs7_A 281 VIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEA-------------FESCTSLVSIDLPYL-VEEIGKRSFRGC 342 (394)
T ss_dssp EEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTT-------------TTTCTTCCEECCCTT-CCEECTTTTTTC
T ss_pred eccCceeec---cccccccccccccccccc-cceechhh-------------hcCCCCCCEEEeCCc-ccEEhHHhccCC
Confidence 766543221 134666777777777543 55555443 777788888877543 322 5667
Q ss_pred CCCCEEECCCCCCcccch-hhccCCCCCeeccccC
Q 042374 645 SSLEYLDLSGNDFESLPA-SIKQLSRLRKLHLCYC 678 (714)
Q Consensus 645 ~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~~ 678 (714)
.+|+.+++..+ ++.++. ++.+|++|+.+++..+
T Consensus 343 ~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 343 TSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 78888888765 666644 6778888888887543
No 162
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.83 E-value=4.8e-10 Score=115.57 Aligned_cols=157 Identities=16% Similarity=0.096 Sum_probs=105.8
Q ss_pred cccccceEecccccceEe-----ccccC-CCCCCcEEecCCCCCCcccccc-ccCCCCCCEEEecCCCCCCCCchhh---
Q 042374 516 ISGSVTKLILWETAIKEV-----PSSVG-CLTNLKVLSLSQCPRLKRISTS-ILKLKSLQNLYLIQCFDLENFPEIL--- 585 (714)
Q Consensus 516 ~~~~L~~L~l~~~~i~~l-----p~~~~-~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l--- 585 (714)
....++.|++++|.+... ...+. ..++|++|+|++|.+....... ...+++|++|++++|.+...-...+
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 345788888888887642 22233 3368889999988765432222 2345678889998887653322222
Q ss_pred --hccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc---------CCCCCCCCEEECCC
Q 042374 586 --EKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL---------NGCLSSLEYLDLSG 654 (714)
Q Consensus 586 --~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~---------~~~l~~L~~L~L~~ 654 (714)
...++|++|++++|.++..... .+...+..+++|++|+|++|.+.+ +..+++|++|+|++
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~---------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVA---------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHH---------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred HHhcCCccceeeCCCCCCChHHHH---------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC
Confidence 2357788899988887643221 122235667888888998888765 45567888899988
Q ss_pred CCCc-----ccchhhccCCCCCeeccccCccc
Q 042374 655 NDFE-----SLPASIKQLSRLRKLHLCYCDKL 681 (714)
Q Consensus 655 n~l~-----~lp~~l~~l~~L~~L~l~~~~~~ 681 (714)
|.++ .++..+..+++|++|+|++|++.
T Consensus 221 N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 221 NGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp SCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 8887 34555667788888998888864
No 163
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.81 E-value=5.5e-08 Score=101.02 Aligned_cols=196 Identities=12% Similarity=0.051 Sum_probs=113.6
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
....++|++..++.+.+.+..+. ..+.+.|+|++|+||||+|+.+++........ .... +. .... ...+.
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~-~~~~----~~---~~~~-~~~~~ 83 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TATP----CG---VCDN-CREIE 83 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCS-CSSC----CS---SSHH-HHHHH
T ss_pred chhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCC-CCCC----Cc---ccHH-HHHHh
Confidence 44669999999999999886432 23578899999999999999999876432110 0000 00 0000 01111
Q ss_pred HH----HhCCCCCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCChh-HH
Q 042374 135 SQ----VLGDKNLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDKQ-VL 203 (714)
Q Consensus 135 ~~----~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~~-v~ 203 (714)
.. +...........+..+.+.+.+ .+++.++|+||++.. ....+.+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 00 0000000001112223333333 356789999999764 2445555555443345666777765443 11
Q ss_pred -HhcCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHhh
Q 042374 204 -DKCGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVLG 262 (714)
Q Consensus 204 -~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 262 (714)
........+++.+++.++..+++.+.+......-. .+.+..+++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~--~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE--PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC--HHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHCCCCHHHHHHHH
Confidence 11233468999999999999999877643221111 1456788999999998775543
No 164
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.80 E-value=3.2e-10 Score=116.97 Aligned_cols=154 Identities=13% Similarity=0.031 Sum_probs=82.9
Q ss_pred CCCCcEEEeCCCcCCCc----cc----ccccccceEecccccceEe--ccccCCCCCCcEEecCCCCCCccccccc----
Q 042374 496 FVCPVTINCGGCVNLTE----FP----QISGSVTKLILWETAIKEV--PSSVGCLTNLKVLSLSQCPRLKRISTSI---- 561 (714)
Q Consensus 496 ~~~L~~L~l~~~~~l~~----~~----~~~~~L~~L~l~~~~i~~l--p~~~~~l~~L~~L~l~~~~~~~~~~~~~---- 561 (714)
..+|+.|++++|..-.. +. ....+|++|+|++|.+... ......+++|++|+|++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 34566777766542110 11 1124667777777766421 1112234566777777776543322222
Q ss_pred -cCCCCCCEEEecCCCCCC----CCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCC
Q 042374 562 -LKLKSLQNLYLIQCFDLE----NFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLR 636 (714)
Q Consensus 562 -~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 636 (714)
...++|++|++++|.+.. .++..+..+++|++|++++|.+...... .+...+...++|+.|+|++|
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~---------~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE---------LLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH---------HHHHHGGGCSCCCEEECCSS
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH---------HHHHHHhcCCCcCeEECCCC
Confidence 234667777777776532 2334445666777777777766532211 11222455566777777777
Q ss_pred CcCc---------CCCCCCCCEEECCCCCCc
Q 042374 637 NYAL---------NGCLSSLEYLDLSGNDFE 658 (714)
Q Consensus 637 ~~~~---------~~~l~~L~~L~L~~n~l~ 658 (714)
.+.+ +...++|++|+|++|.++
T Consensus 222 ~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 222 GAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 7655 223466777777777766
No 165
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.80 E-value=6.2e-08 Score=98.21 Aligned_cols=179 Identities=13% Similarity=0.107 Sum_probs=109.6
Q ss_pred CCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhh-ccc-ceEEeeechhcccccChHHHHHHH
Q 042374 56 LDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISR-HFQ-GKCFMANVREESNKMGAIHVRDEV 133 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~-~f~-~~~~~~~~~~~~~~~~~~~~~~~~ 133 (714)
...++|++..++.+.+++..+. ...+.++|++|+|||++|+.+++.+.. .+. ..+.+... .......+....
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~--- 89 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS-DERGIDVVRHKI--- 89 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETT-STTCTTTSSHHH---
T ss_pred HHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCc-cccChHHHHHHH---
Confidence 3568999999999999886532 333889999999999999999987632 211 12222210 000000111111
Q ss_pred HHHHhCCCCCcccchhhHHHHHHH--h-cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCChh-HHH-hcC
Q 042374 134 ISQVLGDKNLKIGTLVIHQNIRKR--L-RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDKQ-VLD-KCG 207 (714)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~~-v~~-~~~ 207 (714)
...... + .+++-++|+|+++.. ....+.+...+.....++.+|+||.... +.. ...
T Consensus 90 ------------------~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 90 ------------------KEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp ------------------HHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred ------------------HHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 111101 1 256789999999765 2445666666655556777887776543 111 122
Q ss_pred CCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHH
Q 042374 208 VNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEV 260 (714)
Q Consensus 208 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 260 (714)
....+++.+++.++..+++...+......-. .+....+++.++|.+..+..
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~--~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVKIT--EDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCCBC--HHHHHHHHHTTTTCHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHH
Confidence 3458999999999999999887643221111 24567788888998875443
No 166
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.74 E-value=1.4e-08 Score=104.43 Aligned_cols=84 Identities=15% Similarity=0.049 Sum_probs=52.5
Q ss_pred Eecccc-cceEeccccCCCCCCcEEecCC-CCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCcc
Q 042374 523 LILWET-AIKEVPSSVGCLTNLKVLSLSQ-CPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTK 600 (714)
Q Consensus 523 L~l~~~-~i~~lp~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 600 (714)
++.+++ .++.+|. +..+++|+.|+|++ |.+.+..+..|.++++|+.|+|++|.+.+..|..|.++++|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 344444 5566666 66666677777764 55544444556666777777777666555555566666777777777776
Q ss_pred ccccCcc
Q 042374 601 IRELPST 607 (714)
Q Consensus 601 l~~~~~~ 607 (714)
|+.+|..
T Consensus 92 l~~~~~~ 98 (347)
T 2ifg_A 92 LESLSWK 98 (347)
T ss_dssp CSCCCST
T ss_pred cceeCHH
Confidence 6666544
No 167
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.74 E-value=7.3e-08 Score=89.55 Aligned_cols=50 Identities=24% Similarity=0.330 Sum_probs=41.9
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
....++||+++++++.+.+... ..+.+.|+|++|+|||++|+.+++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4577999999999999988553 3456789999999999999999987643
No 168
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.64 E-value=5.5e-07 Score=93.13 Aligned_cols=202 Identities=14% Similarity=0.090 Sum_probs=107.9
Q ss_pred CCCcccchhhHHHH---HhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHH
Q 042374 56 LDGFVGLNSRIEEV---KSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDE 132 (714)
Q Consensus 56 ~~~~vGr~~~~~~l---~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 132 (714)
.+.+||++..++.+ .+.+..+....+.+.|+|++|+|||++|+.+++....... .+.+....-.+......+...+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 121 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTP-FTAIAGSEIFSLEMSKTEALTQ 121 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCC-EEEEEGGGGSCSSSCHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCC-cccccchhhhhcccchhHHHHH
Confidence 45799999987764 4444333333468899999999999999999998754322 1222222212223333344444
Q ss_pred HHHHHhCCC----------------------------CCccc-chhhH-HHHHHHh-----cCC----cEEEEEeCCCCC
Q 042374 133 VISQVLGDK----------------------------NLKIG-TLVIH-QNIRKRL-----RQV----KMLIVLDAVHDG 173 (714)
Q Consensus 133 ~~~~~~~~~----------------------------~~~~~-~~~~~-~~l~~~l-----~~k----~~LlVlDdv~~~ 173 (714)
.+....+.. ....+ ..... +.+.+.. .++ +.++++|+++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l 201 (368)
T 3uk6_A 122 AFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML 201 (368)
T ss_dssp HHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS
T ss_pred HHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc
Confidence 433322110 00000 01111 2221111 233 359999999765
Q ss_pred -HHHHHHHhcCCCCCCCCcEEEEEcC-C-----------h-hH-HHhcCCCeEEecCCCCHHHHHHHHHHhhhhcCCCCh
Q 042374 174 -FTQLESLAGELDKFTTGSRIIITTR-D-----------K-QV-LDKCGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPP 238 (714)
Q Consensus 174 -~~~~~~l~~~l~~~~~gs~IliTtR-~-----------~-~v-~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~ 238 (714)
....+.+...+...... .++++|. . . .+ .........+.+++++.++..+++...+......-.
T Consensus 202 ~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~~~ 280 (368)
T 3uk6_A 202 DIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMS 280 (368)
T ss_dssp BHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCCBC
T ss_pred ChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 33445555444332223 3444442 1 1 11 111122345899999999999999887654322111
Q ss_pred hHHHHHHHHHHHhc-CCChhhHHh
Q 042374 239 DFLGLSLEVVHYAR-NNPLALEVL 261 (714)
Q Consensus 239 ~~~~~~~~i~~~~~-g~Plai~~~ 261 (714)
.+....+++.+. |.|-.+..+
T Consensus 281 --~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 281 --EDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp --HHHHHHHHHHHHHSCHHHHHHH
T ss_pred --HHHHHHHHHHhcCCCHHHHHHH
Confidence 256778888888 887655443
No 169
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.64 E-value=1.4e-07 Score=95.74 Aligned_cols=176 Identities=16% Similarity=0.157 Sum_probs=106.0
Q ss_pred CCCCcccchhhHHHHHhhhcc---cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCL---ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRD 131 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~---~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 131 (714)
....+||++..++.+..++.. .......+.|+|++|+|||++|+.+++.....| .++. .......
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~----~~~~~~~----- 77 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS----GPAIEKP----- 77 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC----TTTCCSH-----
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe----ccccCCh-----
Confidence 456799999999988887753 122345788999999999999999998764322 2332 1111111
Q ss_pred HHHHHHhCCCCCcccchhhHHHHHHHhc---CCcEEEEEeCCCCC-HHHHHHHhcCCCCC------------------CC
Q 042374 132 EVISQVLGDKNLKIGTLVIHQNIRKRLR---QVKMLIVLDAVHDG-FTQLESLAGELDKF------------------TT 189 (714)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~-~~~~~~l~~~l~~~------------------~~ 189 (714)
..+...+. .++.++++|+++.. ......+...+... .+
T Consensus 78 --------------------~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 78 --------------------GDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp --------------------HHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred --------------------HHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 11111221 35568999999875 12233332221111 02
Q ss_pred CcEEEEEcCChh-HHHhc--CCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHhhhh
Q 042374 190 GSRIIITTRDKQ-VLDKC--GVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVLGSS 264 (714)
Q Consensus 190 gs~IliTtR~~~-v~~~~--~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 264 (714)
...+|.||.... +.... +....+.+.+++.+|..+++...+......-. .+....+++.+.|+|-.+..+...
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~G~~r~l~~~l~~ 213 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT--EEAALEIGRRSRGTMRVAKRLFRR 213 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC--HHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHccCCHHHHHHHHHH
Confidence 345666655432 21111 22357999999999999999887643221111 256788899999999877665443
No 170
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.62 E-value=1.4e-07 Score=93.75 Aligned_cols=173 Identities=18% Similarity=0.208 Sum_probs=98.8
Q ss_pred CCCcccchhhHHHHHhhhccc-----------CCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhccccc
Q 042374 56 LDGFVGLNSRIEEVKSLLCLE-----------SRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKM 124 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~~-----------~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 124 (714)
...++|.+..+++|.+++... ....+.+.|+|++|+|||++|+.+++.....|- .+. ........
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~---~v~-~~~~~~~~ 91 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFI---RVV-GSELVKKF 91 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE---EEE-GGGGCCCS
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe-hHHHHHhc
Confidence 456899999999988877431 133556899999999999999999987644321 222 11110000
Q ss_pred ChHHHHHHHHHHHhCCCCCcccchhhH-HHHHHHhcCCcEEEEEeCCCCC---------------HHHHHHHhcCCC--C
Q 042374 125 GAIHVRDEVISQVLGDKNLKIGTLVIH-QNIRKRLRQVKMLIVLDAVHDG---------------FTQLESLAGELD--K 186 (714)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~---------------~~~~~~l~~~l~--~ 186 (714)
. ....... ..+.......+.+|++||++.. ...+..+...+. .
T Consensus 92 ------------------~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 92 ------------------I-GEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp ------------------T-THHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC
T ss_pred ------------------c-chHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC
Confidence 0 0001111 2222233456789999999531 012222322221 1
Q ss_pred CCCCcEEEEEcCChhHHH-----hcCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCC
Q 042374 187 FTTGSRIIITTRDKQVLD-----KCGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNN 254 (714)
Q Consensus 187 ~~~gs~IliTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 254 (714)
...+..||.||....... .......+.++..+.++..+++...+........ .....+++.+.|.
T Consensus 153 ~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~ 222 (285)
T 3h4m_A 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGC 222 (285)
T ss_dssp SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTC
T ss_pred CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCC
Confidence 223566777887553221 1123457899999999999999887643322111 1245667777774
No 171
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.60 E-value=4.1e-08 Score=100.15 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=44.0
Q ss_pred CCCCCCceeccCCCcCc--------CCCCCCCCEEECCCCCCcc-----cchhhccCCCCCeeccccCccc
Q 042374 624 DTNDLEGLSLYLRNYAL--------NGCLSSLEYLDLSGNDFES-----LPASIKQLSRLRKLHLCYCDKL 681 (714)
Q Consensus 624 ~~~~L~~L~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~l~~~~~~ 681 (714)
.+++|+.|.|.+|.+.+ .+.+++|++|+|+.|.++. ++..+..+++|+.|+|++|.+.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 46788888888777653 3457889999998888874 4555667888999999888754
No 172
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.59 E-value=4.2e-07 Score=98.00 Aligned_cols=190 Identities=17% Similarity=0.200 Sum_probs=106.4
Q ss_pred CCCCcccchhhHHHHHhhhcccC---------------CCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechh
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLES---------------RDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVRE 119 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~---------------~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~ 119 (714)
....++|++..++++.+++.... +..+.+.|+|++|+|||++|+.+++... +. .+.+.
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~in---- 109 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQN---- 109 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEEC----
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEe----
Confidence 44679999999999999885410 1346899999999999999999998773 11 22332
Q ss_pred cccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHH--hcCCcEEEEEeCCCCC----HHHHHHHhcCCCCCCCCcEE
Q 042374 120 ESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKR--LRQVKMLIVLDAVHDG----FTQLESLAGELDKFTTGSRI 193 (714)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--l~~k~~LlVlDdv~~~----~~~~~~l~~~l~~~~~gs~I 193 (714)
.+.... .......+....+..... .......+. ..+++.+||+|+++.. ...+..+...+.. .+..|
T Consensus 110 ~s~~~~-~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~i 182 (516)
T 1sxj_A 110 ASDVRS-KTLLNAGVKNALDNMSVV----GYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPL 182 (516)
T ss_dssp TTSCCC-HHHHHHTGGGGTTBCCST----TTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCE
T ss_pred CCCcch-HHHHHHHHHHHhccccHH----HHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCE
Confidence 122111 223333222221111100 000001001 1356789999999653 1122333322221 23335
Q ss_pred EEEcCChh---HHHhcCCCeEEecCCCCHHHHHHHHHHhhhhcC-CCChhHHHHHHHHHHHhcCCCh-hhHHh
Q 042374 194 IITTRDKQ---VLDKCGVNYVYEVEGLEHNKAFELFYRKAFRQN-NYPPDFLGLSLEVVHYARNNPL-ALEVL 261 (714)
Q Consensus 194 liTtR~~~---v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 261 (714)
|+++.... +.........+.+++++.++..+++...+.... ..++ +....|++.++|.+- ++..+
T Consensus 183 Ili~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 183 ILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHH
T ss_pred EEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHH
Confidence 55544322 222233456799999999999999987765432 2222 356788888999654 44443
No 173
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.58 E-value=1.3e-07 Score=91.35 Aligned_cols=173 Identities=12% Similarity=0.163 Sum_probs=98.5
Q ss_pred CCCcccch---hhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHH
Q 042374 56 LDGFVGLN---SRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDE 132 (714)
Q Consensus 56 ~~~~vGr~---~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 132 (714)
.+.|+|.+ ..++.+..+.... ..+.+.|+|++|+||||+|+.+++........+.|+..... ... .
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~-~~~--~------ 95 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH-ASI--S------ 95 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG-GGS--C------
T ss_pred hhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH-HHH--H------
Confidence 35677743 4455566555332 45678899999999999999999987665445566652111 000 0
Q ss_pred HHHHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCC-HHH--HHHHhcCCCCC-CCCc-EEEEEcCChh------
Q 042374 133 VISQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG-FTQ--LESLAGELDKF-TTGS-RIIITTRDKQ------ 201 (714)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~--~~~l~~~l~~~-~~gs-~IliTtR~~~------ 201 (714)
.+. + +.+ .++-++|+||++.. ... .+.+...+... ..+. ++|+||+...
T Consensus 96 ---------------~~~---~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~ 155 (242)
T 3bos_A 96 ---------------TAL---L-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFV 155 (242)
T ss_dssp ---------------GGG---G-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCC
T ss_pred ---------------HHH---H-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHh
Confidence 000 0 011 34568999999653 011 22232221111 1222 4777776321
Q ss_pred ---HHHhcCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHh
Q 042374 202 ---VLDKCGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVL 261 (714)
Q Consensus 202 ---v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 261 (714)
+...+.....+++++++.++..+++...+......-. .+....+++.++|.+-.+..+
T Consensus 156 ~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 156 LPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLP--EDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp CHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCC--HHHHHHHHHHTTTCHHHHHHH
T ss_pred hhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHccCCHHHHHHH
Confidence 1111112268999999999999999887643221111 256678888899887655443
No 174
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.57 E-value=8.9e-08 Score=98.27 Aligned_cols=100 Identities=20% Similarity=0.132 Sum_probs=78.7
Q ss_pred cEEecCCCCCCccccccccCCCCCCEEEecC-CCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCcc
Q 042374 544 KVLSLSQCPRLKRISTSILKLKSLQNLYLIQ-CFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSV 622 (714)
Q Consensus 544 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~ 622 (714)
..++.+++..+..+|. +..+++|++|+|++ |.+....+..|+.+++|+.|+|++|.|+.++... +
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-------------~ 76 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA-------------F 76 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTG-------------G
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHH-------------h
Confidence 3467777623566888 99999999999996 7766555578999999999999999998877654 7
Q ss_pred CCCCCCCceeccCCCcCcC-----CCCCCCCEEECCCCCCc
Q 042374 623 ADTNDLEGLSLYLRNYALN-----GCLSSLEYLDLSGNDFE 658 (714)
Q Consensus 623 ~~~~~L~~L~l~~~~~~~~-----~~l~~L~~L~L~~n~l~ 658 (714)
.++++|+.|+|++|.+..+ ..++ |+.|+|.+|.+.
T Consensus 77 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 77 HFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp GSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred cCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 8888899999999888762 2333 888888888877
No 175
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.57 E-value=3e-07 Score=96.79 Aligned_cols=180 Identities=13% Similarity=0.210 Sum_probs=103.0
Q ss_pred CCcc-cchhhH--HHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccc--eEEeeechhcccccChHHHHH
Q 042374 57 DGFV-GLNSRI--EEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQG--KCFMANVREESNKMGAIHVRD 131 (714)
Q Consensus 57 ~~~v-Gr~~~~--~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~~~ 131 (714)
+.|| |..... ..+..+..... ....+.|+|++|+||||||+.+++....++.. ++++.. .....
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~-~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~----------~~~~~ 173 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPG-RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS----------EKFLN 173 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTT-SSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH----------HHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCC-CCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH----------HHHHH
Confidence 3455 655443 33333332222 25678999999999999999999987665432 344431 11233
Q ss_pred HHHHHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCCH---HHHHHHhcCCCC-CCCCcEEEEEcCCh-------
Q 042374 132 EVISQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDGF---TQLESLAGELDK-FTTGSRIIITTRDK------- 200 (714)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~~l~~~l~~-~~~gs~IliTtR~~------- 200 (714)
++...+.... ...+.+.+..++-+|++||++... ...+.+...+.. ...|..||+||...
T Consensus 174 ~~~~~~~~~~---------~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l 244 (440)
T 2z4s_A 174 DLVDSMKEGK---------LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_dssp HHHHHHHTTC---------HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSC
T ss_pred HHHHHHHccc---------HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHH
Confidence 3333322110 123344444367799999996431 222333332211 23467788888753
Q ss_pred --hHHHhcCCCeEEecCCCCHHHHHHHHHHhhhhcC-CCChhHHHHHHHHHHHhcCCChhhH
Q 042374 201 --QVLDKCGVNYVYEVEGLEHNKAFELFYRKAFRQN-NYPPDFLGLSLEVVHYARNNPLALE 259 (714)
Q Consensus 201 --~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Plai~ 259 (714)
.+...+.....+.+++++.++..+++.+.+.... ..++ +....|++.+.|.+-.+.
T Consensus 245 ~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 245 QDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp CHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHH
T ss_pred HHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHH
Confidence 2222232235788999999999999988764322 1222 346677888888875443
No 176
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.56 E-value=1.2e-06 Score=89.93 Aligned_cols=191 Identities=13% Similarity=0.141 Sum_probs=109.0
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhh--cccc-eEEeeechhcccccChHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISR--HFQG-KCFMANVREESNKMGAIHVRD 131 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~--~f~~-~~~~~~~~~~~~~~~~~~~~~ 131 (714)
....++|++..++.+..++..+. ...+.|+|++|+||||+|+.+++.+.. .+.. ...+. .+..... ..++
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~----~~~~~~~-~~~~ 107 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN----ASDERGI-SIVR 107 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC----SSSCCCH-HHHT
T ss_pred CHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc----cccccch-HHHH
Confidence 45779999999999999986543 223889999999999999999987542 1222 22222 1111122 2222
Q ss_pred HHHHHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCChh-HHHh-cCC
Q 042374 132 EVISQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDKQ-VLDK-CGV 208 (714)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~~-v~~~-~~~ 208 (714)
+.+............. ......-.+++-++++|+++.. ......+...+.......++|++|.... +... ...
T Consensus 108 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 108 EKVKNFARLTVSKPSK----HDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp THHHHHHHSCCCCCCT----THHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHHhhhcccccch----hhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc
Confidence 2222211110000000 0000011235579999999764 2334444444433344566777665442 2111 112
Q ss_pred CeEEecCCCCHHHHHHHHHHhhhhcCC-CChhHHHHHHHHHHHhcCCChhhH
Q 042374 209 NYVYEVEGLEHNKAFELFYRKAFRQNN-YPPDFLGLSLEVVHYARNNPLALE 259 (714)
Q Consensus 209 ~~~~~l~~L~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~Plai~ 259 (714)
...+.+.+++.++..+.+...+..... .+ .+....|++.++|.|-.+.
T Consensus 184 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~ 232 (353)
T 1sxj_D 184 CSKFRFKALDASNAIDRLRFISEQENVKCD---DGVLERILDISAGDLRRGI 232 (353)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHTSSCHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 247899999999999999887643221 22 2567889999999987643
No 177
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.56 E-value=7.5e-07 Score=91.59 Aligned_cols=195 Identities=11% Similarity=0.071 Sum_probs=104.6
Q ss_pred CCCcccchhhHHHHHhhh-cccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeech----------------
Q 042374 56 LDGFVGLNSRIEEVKSLL-CLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVR---------------- 118 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l-~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~---------------- 118 (714)
...++|.+..++.+.+++ ..+. ... +.|+|++|+||||+|+.++..+...-...+.+....
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 90 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSS 90 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEEC
T ss_pred HHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecc
Confidence 356899999999999988 4432 233 899999999999999999986532111111111000
Q ss_pred ----hc--ccc-cChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCC
Q 042374 119 ----EE--SNK-MGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG-FTQLESLAGELDKFTTG 190 (714)
Q Consensus 119 ----~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~g 190 (714)
.. +.. .......++.+..+......... ..+ ..+.+++-++|+|+++.. ....+.+...+.....+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQ-----DSK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp SSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTT
T ss_pred cceEEecHhhcCCcchHHHHHHHHHHHHhcccccc-----ccc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCC
Confidence 00 000 00000122222221110000000 000 001336679999999875 23334444444333456
Q ss_pred cEEEEEcCChh-HHH-hcCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhH
Q 042374 191 SRIIITTRDKQ-VLD-KCGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALE 259 (714)
Q Consensus 191 s~IliTtR~~~-v~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 259 (714)
+.+|++|.... +.. .......+++++++.++..+.+...+......-+ ..+.+..|++.++|.+-.+.
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~l~~i~~~~~G~~r~a~ 234 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE-TKDILKRIAQASNGNLRVSL 234 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC-CSHHHHHHHHHHTTCHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHcCCCHHHHH
Confidence 77777776532 221 2223478999999999999999887643321100 01567788899999986553
No 178
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.53 E-value=4.5e-06 Score=87.03 Aligned_cols=223 Identities=13% Similarity=0.039 Sum_probs=140.4
Q ss_pred cccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccC-CccccCCCCCCEEecCCCCCCCccCCCCCCCCCcEEEe
Q 042374 426 LLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSV-PSSIQNFNHLSMLCFEGCKSLRSFPSNLHFVCPVTINC 504 (714)
Q Consensus 426 ~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 504 (714)
+.+|+.+.+..+........|.++.+|+.+.+..+ +..+ ...+.++..|+.+.+..+.. ..-........|+.+.+
T Consensus 161 c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~-~i~~~~~~~~~l~~i~i 237 (394)
T 4fs7_A 161 CESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLY-YLGDFALSKTGVKNIII 237 (394)
T ss_dssp CTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCC-EECTTTTTTCCCCEEEE
T ss_pred cCCCcEEecCCccceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCce-EeehhhcccCCCceEEE
Confidence 77888888876543222224788888888888664 2333 34567777777777655321 11122233556666665
Q ss_pred CCCcCCCccc----ccccccceEecccccceEeccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCC
Q 042374 505 GGCVNLTEFP----QISGSVTKLILWETAIKEVPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLEN 580 (714)
Q Consensus 505 ~~~~~l~~~~----~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 580 (714)
... +..+. .....++.+.+..+...--...+..+..++.+...... .....+..+.+|+.+.+.++ ....
T Consensus 238 p~~--~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I 311 (394)
T 4fs7_A 238 PDS--FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFI 311 (394)
T ss_dssp CTT--CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEE
T ss_pred CCC--ceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee---eccccccccccccccccccc-ccee
Confidence 431 22221 22345666666655433334447788888888776542 12235778889999998764 2222
Q ss_pred CchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc-----CCCCCCCCEEECCCC
Q 042374 581 FPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL-----NGCLSSLEYLDLSGN 655 (714)
Q Consensus 581 ~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-----~~~l~~L~~L~L~~n 655 (714)
-...|.++++|+.+++.. .++.++... |.++.+|+.+.+..+ +.. +..+++|+.+++..
T Consensus 312 ~~~aF~~c~~L~~i~lp~-~v~~I~~~a-------------F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~- 375 (394)
T 4fs7_A 312 GEEAFESCTSLVSIDLPY-LVEEIGKRS-------------FRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK- 375 (394)
T ss_dssp CTTTTTTCTTCCEECCCT-TCCEECTTT-------------TTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG-
T ss_pred chhhhcCCCCCCEEEeCC-cccEEhHHh-------------ccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC-
Confidence 235688899999999864 366666554 888999999998765 333 67788999999865
Q ss_pred CCcccchhhccCCCCCee
Q 042374 656 DFESLPASIKQLSRLRKL 673 (714)
Q Consensus 656 ~l~~lp~~l~~l~~L~~L 673 (714)
.++.+..++.++++|+.+
T Consensus 376 ~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 376 RLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp GGGGGGGGBCTTCEEEEE
T ss_pred CCEEhhheecCCCCCcEE
Confidence 355566667778777764
No 179
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.53 E-value=8.3e-07 Score=86.89 Aligned_cols=177 Identities=16% Similarity=0.112 Sum_probs=98.1
Q ss_pred CCCcccchhhHHHHHhhhcc---c-------CCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccC
Q 042374 56 LDGFVGLNSRIEEVKSLLCL---E-------SRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMG 125 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~---~-------~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 125 (714)
...++|.+..++.+.+++.. . ....+.+.|+|++|+|||++|+.+++.....| +.+. .........
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~~-~~~~~~~~~ 80 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAMA-GAEFVEVIG 80 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEEE-TTTTSSSST
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEec-hHHHHhhcc
Confidence 45689999888887665531 1 12345688999999999999999998764432 2222 111100000
Q ss_pred hHHHHHHHHHHHhCCCCCcccchhhH-HHHHHHhcCCcEEEEEeCCCCC----------------HHHHHHHhcCCCC--
Q 042374 126 AIHVRDEVISQVLGDKNLKIGTLVIH-QNIRKRLRQVKMLIVLDAVHDG----------------FTQLESLAGELDK-- 186 (714)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~~l~~~l~~-- 186 (714)
. ...... ..+.......+.+|++|+++.. ...+..+...+..
T Consensus 81 ------------------~-~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 141 (262)
T 2qz4_A 81 ------------------G-LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG 141 (262)
T ss_dssp ------------------T-HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC
T ss_pred ------------------C-hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC
Confidence 0 001111 2222233456789999999753 0112333332221
Q ss_pred CCCCcEEEEEcCChhHHH-h-c---CCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCCh
Q 042374 187 FTTGSRIIITTRDKQVLD-K-C---GVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPL 256 (714)
Q Consensus 187 ~~~gs~IliTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 256 (714)
...+..||.||....... . . .....+.++..+.++..+++...+..... ..........+++.+.|.+-
T Consensus 142 ~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 142 TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp TTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CBTHHHHHHHHHHTCTTCCH
T ss_pred CCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHCCCCCH
Confidence 123556666776543211 1 1 23467889999999999999887643322 22222234677777887764
No 180
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.51 E-value=2e-06 Score=84.55 Aligned_cols=170 Identities=15% Similarity=0.147 Sum_probs=94.3
Q ss_pred CCCcccchhhHHHHHhh-------hcc-cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChH
Q 042374 56 LDGFVGLNSRIEEVKSL-------LCL-ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAI 127 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~-------l~~-~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 127 (714)
...++|.+..++++... +.. .....+.+.|+|++|+|||++|+.+++.....| +.+.. +.
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~----~~----- 99 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKICS----PD----- 99 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEEC----GG-----
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeC----HH-----
Confidence 45688888877766652 211 234577899999999999999999998754322 22221 10
Q ss_pred HHHHHHHHHHhCCCCCcccchhhH-HHHHHHhcCCcEEEEEeCCCC-----------CHHHHHHHhcCCCC---CCCCcE
Q 042374 128 HVRDEVISQVLGDKNLKIGTLVIH-QNIRKRLRQVKMLIVLDAVHD-----------GFTQLESLAGELDK---FTTGSR 192 (714)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~-----------~~~~~~~l~~~l~~---~~~gs~ 192 (714)
.+.+.. ........ ..+......++.+|++|+++. ....++.+...+.. ......
T Consensus 100 --------~~~g~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 169 (272)
T 1d2n_A 100 --------KMIGFS--ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLL 169 (272)
T ss_dssp --------GCTTCC--HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEE
T ss_pred --------HhcCCc--hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEE
Confidence 001110 00000111 222223346688999999743 11223333332222 223345
Q ss_pred EEEEcCChhHHHh---c-CCCeEEecCCCCH-HHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCC
Q 042374 193 IIITTRDKQVLDK---C-GVNYVYEVEGLEH-NKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNN 254 (714)
Q Consensus 193 IliTtR~~~v~~~---~-~~~~~~~l~~L~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 254 (714)
||.||........ . .....+.+++++. ++..+++.+.. ... .+....+++.+.|.
T Consensus 170 ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~~~---~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 170 IIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----NFK---DKERTTIAQQVKGK 229 (272)
T ss_dssp EEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----CSC---HHHHHHHHHHHTTS
T ss_pred EEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----CCC---HHHHHHHHHHhcCC
Confidence 6777777654332 1 2246789999988 66666665431 111 24567788888884
No 181
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.50 E-value=1e-06 Score=88.86 Aligned_cols=174 Identities=13% Similarity=0.092 Sum_probs=99.0
Q ss_pred CCCcccchhhHHHHHhhhc----------ccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccC
Q 042374 56 LDGFVGLNSRIEEVKSLLC----------LESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMG 125 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~----------~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 125 (714)
-..++|.+..++.|.+++. ......+.|.|+|++|+|||+||+.+++.....| +.+. ..
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~---~~v~-~~------- 85 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-SS------- 85 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE---EEEE-HH-------
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE---EEEc-hH-------
Confidence 3558999999999888772 1122346789999999999999999998765432 1222 10
Q ss_pred hHHHHHHHHHHHhCCCCCcccchhhHHHHH-HHhcCCcEEEEEeCCCCC------------HHHHHHHhcCCC---CCCC
Q 042374 126 AIHVRDEVISQVLGDKNLKIGTLVIHQNIR-KRLRQVKMLIVLDAVHDG------------FTQLESLAGELD---KFTT 189 (714)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~------------~~~~~~l~~~l~---~~~~ 189 (714)
++.....+ ........+. ..-..++.+|++|+++.. ......+...+. ....
T Consensus 86 ------~l~~~~~g------~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 86 ------DLVSKWMG------ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp ------HHHTTTGG------GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred ------HHhhcccc------hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 01100000 0011112222 223456789999999642 011233332222 2234
Q ss_pred CcEEEEEcCChhHHH---hcCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCC
Q 042374 190 GSRIIITTRDKQVLD---KCGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNN 254 (714)
Q Consensus 190 gs~IliTtR~~~v~~---~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 254 (714)
+..||.||....... .-+....+.++..+.++..+++..++........ ......+++.+.|.
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~l~~la~~t~g~ 219 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT--KEDYRTLGAMTEGY 219 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC--HHHHHHHHHTTTTC
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC--HHHHHHHHHHcCCC
Confidence 556666776542211 1134567889999999999999887643322111 13456777777774
No 182
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.45 E-value=1.2e-06 Score=89.48 Aligned_cols=173 Identities=16% Similarity=0.188 Sum_probs=103.4
Q ss_pred CCCCcccchhhHHHHHhhhccc---CCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLE---SRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRD 131 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~---~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 131 (714)
..+.++|++..++.+..++... ......|.|+|++|+|||++|+.+++.....| +.+. ...... .
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~----~~~~~~-~---- 94 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTA----APMIEK-S---- 94 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEE----GGGCCS-H----
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEec----chhccc-h----
Confidence 4567999999999998888642 23455689999999999999999988764433 2222 111000 0
Q ss_pred HHHHHHhCCCCCcccchhhHHHHHHHh--cCCcEEEEEeCCCCC-HHHHHHHhcCCCCC------------------CCC
Q 042374 132 EVISQVLGDKNLKIGTLVIHQNIRKRL--RQVKMLIVLDAVHDG-FTQLESLAGELDKF------------------TTG 190 (714)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~------------------~~g 190 (714)
..+...+ ..+..++++|+++.. ......+...+... .++
T Consensus 95 --------------------~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 95 --------------------GDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp --------------------HHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred --------------------hHHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 1111111 245678999999765 22233333222111 112
Q ss_pred cEEEEEcCChh-HHHh--cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHh
Q 042374 191 SRIIITTRDKQ-VLDK--CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVL 261 (714)
Q Consensus 191 s~IliTtR~~~-v~~~--~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 261 (714)
..+|.+|.... +... .+....+.+++++.++..+++...+...... -..+....+++.+.|+|-.+..+
T Consensus 155 ~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT--CEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE--ECHHHHHHHHHTTTTCHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHCcCHHHHHHH
Confidence 45665555432 1111 1334689999999999999998776432211 11256677888889998555433
No 183
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.45 E-value=1.1e-06 Score=92.19 Aligned_cols=175 Identities=14% Similarity=0.184 Sum_probs=99.4
Q ss_pred CCCCcccchhhH---HHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHH
Q 042374 55 DLDGFVGLNSRI---EEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRD 131 (714)
Q Consensus 55 ~~~~~vGr~~~~---~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 131 (714)
..+.+||.+..+ ..+...+..+ ..+.+.|+|++|+||||+|+.+++.....|.. +. ........ .+
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~---l~-----a~~~~~~~-ir 92 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVER---IS-----AVTSGVKE-IR 92 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEE---EE-----TTTCCHHH-HH
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEE---EE-----eccCCHHH-HH
Confidence 557799999888 6677777543 34678999999999999999999876544321 11 11111111 12
Q ss_pred HHHHHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEE-EEcCChh--H-HHhc
Q 042374 132 EVISQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRII-ITTRDKQ--V-LDKC 206 (714)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~Il-iTtR~~~--v-~~~~ 206 (714)
+++.. .......+++.+|++|+++.. ....+.+...+.. + ...+| .||.+.. + ....
T Consensus 93 ~~~~~----------------a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 93 EAIER----------------ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALL 154 (447)
T ss_dssp HHHHH----------------HHHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHH
T ss_pred HHHHH----------------HHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHh
Confidence 22211 111112467889999999765 1233333333322 1 22333 4555542 1 1122
Q ss_pred CCCeEEecCCCCHHHHHHHHHHhhhhcCC----CC-hhHHHHHHHHHHHhcCCChhh
Q 042374 207 GVNYVYEVEGLEHNKAFELFYRKAFRQNN----YP-PDFLGLSLEVVHYARNNPLAL 258 (714)
Q Consensus 207 ~~~~~~~l~~L~~~~~~~l~~~~~~~~~~----~~-~~~~~~~~~i~~~~~g~Plai 258 (714)
....++.+++++.++..+++.+.+..... .. .-..+....+++.++|.+-.+
T Consensus 155 sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~l 211 (447)
T 3pvs_A 155 SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRA 211 (447)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHH
T ss_pred CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHH
Confidence 33457899999999999999887643110 11 111245667777777776543
No 184
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.44 E-value=2.4e-06 Score=86.41 Aligned_cols=178 Identities=16% Similarity=0.151 Sum_probs=97.2
Q ss_pred CCCcc-cchhh--HHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHH
Q 042374 56 LDGFV-GLNSR--IEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDE 132 (714)
Q Consensus 56 ~~~~v-Gr~~~--~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 132 (714)
.+.|| |.+.. ...+..+..........+.|+|++|+||||||+.+++.....-...+++.. .....+
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~----------~~~~~~ 79 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA----------DDFAQA 79 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH----------HHHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH----------HHHHHH
Confidence 34555 54432 334444443332245678899999999999999999977543223444431 112223
Q ss_pred HHHHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCCH---HHHHHHhcCCCC-CCCCcEEEEEcCCh--------
Q 042374 133 VISQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDGF---TQLESLAGELDK-FTTGSRIIITTRDK-------- 200 (714)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~~l~~~l~~-~~~gs~IliTtR~~-------- 200 (714)
+...+... ....+.+... ++-+|++||++... ...+.+...+.. ...+..||+|+...
T Consensus 80 ~~~~~~~~---------~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 80 MVEHLKKG---------TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHHHHHT---------CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred HHHHHHcC---------cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence 32222110 0122333332 36699999996531 122223222211 12455788777533
Q ss_pred -hHHHhcCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChh
Q 042374 201 -QVLDKCGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLA 257 (714)
Q Consensus 201 -~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 257 (714)
.+...+.....+++++ +.++..+++...+......-+ .+....+++.+ |..-.
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~--~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELR--KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHC-SSHHH
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHhC-CCHHH
Confidence 1222222336789999 999999999888753222111 24567778888 76543
No 185
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.42 E-value=3.4e-06 Score=86.17 Aligned_cols=174 Identities=13% Similarity=0.112 Sum_probs=99.4
Q ss_pred CCCCcccchhhHHHHHhhhcc----------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhccccc
Q 042374 55 DLDGFVGLNSRIEEVKSLLCL----------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKM 124 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 124 (714)
....++|.+..++.|.+++.. .....+.|.|+|++|+|||+||+.+++.....| +.+. ..
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~---~~v~-~~------ 118 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-SS------ 118 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE---EEEE-HH------
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEee-HH------
Confidence 445689999999999887631 112235688999999999999999999874332 1222 10
Q ss_pred ChHHHHHHHHHHHhCCCCCcccchhhHHHHHH-HhcCCcEEEEEeCCCCCH------------HHHHHHhcCCC---CCC
Q 042374 125 GAIHVRDEVISQVLGDKNLKIGTLVIHQNIRK-RLRQVKMLIVLDAVHDGF------------TQLESLAGELD---KFT 188 (714)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~------------~~~~~l~~~l~---~~~ 188 (714)
++.....+. .......+.+ .-..++.+|++|+++... .....+...+. ...
T Consensus 119 -------~l~~~~~g~------~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~ 185 (355)
T 2qp9_X 119 -------DLVSKWMGE------SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 185 (355)
T ss_dssp -------HHHSCC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---
T ss_pred -------HHhhhhcch------HHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccC
Confidence 111110110 1111122222 234578899999997430 01223332221 122
Q ss_pred CCcEEEEEcCChh-----HHHhcCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCC
Q 042374 189 TGSRIIITTRDKQ-----VLDKCGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNP 255 (714)
Q Consensus 189 ~gs~IliTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 255 (714)
.+..||.||.... +.. +....+.++..+.++..+++..++........ ......|++.+.|..
T Consensus 186 ~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~--~~~l~~la~~t~G~s 253 (355)
T 2qp9_X 186 QGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLT--KEDYRTLGAMTEGYS 253 (355)
T ss_dssp CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC--HHHHHHHHHHTTTCC
T ss_pred CCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHcCCCC
Confidence 3555666665442 222 45567889999999999999887643321111 234567888888753
No 186
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.39 E-value=6.1e-06 Score=82.97 Aligned_cols=175 Identities=14% Similarity=0.079 Sum_probs=96.9
Q ss_pred CCcccchhhHHHHHhhhcc----------cCCCeEEEEEEccCchhHHHHHHHHHHHH-hhcccceEEeeechhcccccC
Q 042374 57 DGFVGLNSRIEEVKSLLCL----------ESRDVRIVGIWGMGGIGKTTIASAVFHQI-SRHFQGKCFMANVREESNKMG 125 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~-~~~f~~~~~~~~~~~~~~~~~ 125 (714)
..++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+.+++.. ...| +.+.. ...
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~---~~i~~-~~l----- 82 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSISS-SDL----- 82 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE---EEEEC-CSS-----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcE---EEEEh-HHH-----
Confidence 4588888888888776531 11234678999999999999999999876 2221 22221 000
Q ss_pred hHHHHHHHHHHHhCCCCCcccchhhHHHHHH-HhcCCcEEEEEeCCCCC------------HHHHHHHhcCCCC---CCC
Q 042374 126 AIHVRDEVISQVLGDKNLKIGTLVIHQNIRK-RLRQVKMLIVLDAVHDG------------FTQLESLAGELDK---FTT 189 (714)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~------------~~~~~~l~~~l~~---~~~ 189 (714)
.+ .... ......+.+.+ .-..++.+|++|+++.. ......+...+.. ...
T Consensus 83 ------------~~-~~~g-~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 83 ------------VS-KWLG-ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp ------------CC-SSCC-SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred ------------Hh-hhhh-HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 00 0000 01111222222 22467789999999643 0112223222211 223
Q ss_pred CcEEEEEcCChh-HHH--hcCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCCh
Q 042374 190 GSRIIITTRDKQ-VLD--KCGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPL 256 (714)
Q Consensus 190 gs~IliTtR~~~-v~~--~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 256 (714)
+..||.||.... +-. .-+....+.++..+.++..+++..++........ ......+++.+.|..-
T Consensus 149 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~--~~~l~~la~~t~G~sg 216 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT--EADFRELGRKTDGYSG 216 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC--HHHHHHHHHTCTTCCH
T ss_pred CEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHcCCCCH
Confidence 445555665332 111 1144567889999999999999887633221111 1456677888887643
No 187
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.39 E-value=3e-06 Score=85.21 Aligned_cols=152 Identities=14% Similarity=0.126 Sum_probs=88.3
Q ss_pred cccchhhHHHHHhhhccc-------------CCCeEEEEEEccCchhHHHHHHHHHHHHhhccc----ceEEeeechhcc
Q 042374 59 FVGLNSRIEEVKSLLCLE-------------SRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQ----GKCFMANVREES 121 (714)
Q Consensus 59 ~vGr~~~~~~l~~~l~~~-------------~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~----~~~~~~~~~~~~ 121 (714)
++|.+..++.+.+++..- ......+.|+|++|+|||++|+.+++.+..... ..+.+. ....
T Consensus 33 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~-~~~l- 110 (309)
T 3syl_A 33 LIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT-RDDL- 110 (309)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC-GGGT-
T ss_pred ccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc-HHHh-
Confidence 899999988887765321 233457899999999999999999987644221 222222 1000
Q ss_pred cccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCC----------HHHHHHHhcCCCCCCCCc
Q 042374 122 NKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG----------FTQLESLAGELDKFTTGS 191 (714)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~~l~~~l~~~~~gs 191 (714)
.+. ... ........+.+. .+.-+|++|+++.. ......+...+.....+.
T Consensus 111 ----------------~~~-~~g-~~~~~~~~~~~~--~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 170 (309)
T 3syl_A 111 ----------------VGQ-YIG-HTAPKTKEVLKR--AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDL 170 (309)
T ss_dssp ----------------CCS-STT-CHHHHHHHHHHH--HTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTC
T ss_pred ----------------hhh-ccc-ccHHHHHHHHHh--cCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCE
Confidence 000 000 000111111111 13459999999721 233455555444444566
Q ss_pred EEEEEcCChhHHHh--------cCCCeEEecCCCCHHHHHHHHHHhhhh
Q 042374 192 RIIITTRDKQVLDK--------CGVNYVYEVEGLEHNKAFELFYRKAFR 232 (714)
Q Consensus 192 ~IliTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~l~~~~~~~ 232 (714)
.||.||........ -+....+.+++++.++..+++...+..
T Consensus 171 ~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 171 VVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 77888764432110 022367999999999999999887643
No 188
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.38 E-value=3e-06 Score=86.75 Aligned_cols=182 Identities=12% Similarity=0.069 Sum_probs=101.5
Q ss_pred CCCCcccchhhHHHHHhhhcc----------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhccccc
Q 042374 55 DLDGFVGLNSRIEEVKSLLCL----------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKM 124 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 124 (714)
....++|.+..++.|.+++.. .....+.|.|+|++|+|||++|+.+++.....| +.+. ........
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~---~~i~-~~~l~~~~ 157 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATF---FSIS-ASSLTSKW 157 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEE---EEEE-GGGGCCSS
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeE---EEEe-hHHhhccc
Confidence 345689999999999887742 112356789999999999999999998764322 2232 11110000
Q ss_pred ChHHHHHHHHHHHhCCCCCcccchhhHHHHHH-HhcCCcEEEEEeCCCCC------------HHHHHHHhcCCCC----C
Q 042374 125 GAIHVRDEVISQVLGDKNLKIGTLVIHQNIRK-RLRQVKMLIVLDAVHDG------------FTQLESLAGELDK----F 187 (714)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~------------~~~~~~l~~~l~~----~ 187 (714)
.. ........+.. .-..++.+|++|+++.. ......+...+.. .
T Consensus 158 ------------------~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 218 (357)
T 3d8b_A 158 ------------------VG-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSS 218 (357)
T ss_dssp ------------------TT-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----C
T ss_pred ------------------cc-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccC
Confidence 00 00111122222 22456789999998421 0112233322211 1
Q ss_pred CCCcEEEEEcCChh-HHHh--cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCC-hhhHHh
Q 042374 188 TTGSRIIITTRDKQ-VLDK--CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNP-LALEVL 261 (714)
Q Consensus 188 ~~gs~IliTtR~~~-v~~~--~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~ 261 (714)
..+..||.||.... +... -+....+.++..+.++..+++...+......-. ......+++.+.|.. -.+..+
T Consensus 219 ~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~--~~~l~~la~~t~G~s~~dl~~l 294 (357)
T 3d8b_A 219 EDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS--EEEIEQIVQQSDAFSGADMTQL 294 (357)
T ss_dssp CCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC--HHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc--HHHHHHHHHHcCCCCHHHHHHH
Confidence 23445565665432 1111 134457889999999999999877643221111 245678888888854 344444
No 189
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.34 E-value=4.7e-06 Score=83.17 Aligned_cols=179 Identities=14% Similarity=0.072 Sum_probs=100.0
Q ss_pred CCCcccchhhHHHHHhhhccc----------CCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccC
Q 042374 56 LDGFVGLNSRIEEVKSLLCLE----------SRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMG 125 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~~----------~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 125 (714)
...++|.+..++.+.+++... ....+.+.|+|++|+|||++|+.++......| +.+.. ...
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~---~~i~~-~~l----- 90 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF---LNISA-ASL----- 90 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE---EEEES-TTT-----
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEeeH-HHH-----
Confidence 456899999999988876321 12356789999999999999999998764332 22221 000
Q ss_pred hHHHHHHHHHHHhCCCCCcccchhhHHHH-HHHhcCCcEEEEEeCCCCC------------HHHHHHHh---cCCCCC--
Q 042374 126 AIHVRDEVISQVLGDKNLKIGTLVIHQNI-RKRLRQVKMLIVLDAVHDG------------FTQLESLA---GELDKF-- 187 (714)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~~------------~~~~~~l~---~~l~~~-- 187 (714)
.+. ... ........+ ......++.+|++|+++.. ......+. ...+..
T Consensus 91 ------------~~~-~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 91 ------------TSK-YVG-DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp ------------SSS-SCS-CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred ------------hhc-ccc-hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 000 000 011111222 2223456789999999542 01111222 122211
Q ss_pred CCCcEEEEEcCChh-----HHHhcCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCCh-hhHHh
Q 042374 188 TTGSRIIITTRDKQ-----VLDKCGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPL-ALEVL 261 (714)
Q Consensus 188 ~~gs~IliTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 261 (714)
+.+..||.||.... +.. .....+.++..+.++..+++...+......-. ......+++.+.|.+- ++..+
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD--TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC--HHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHHHHHHH
Confidence 13445666666542 222 23467888888999988988877643322111 2456788888988875 44333
No 190
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.33 E-value=8.9e-05 Score=77.15 Aligned_cols=132 Identities=11% Similarity=0.076 Sum_probs=64.5
Q ss_pred eeeCHHHHhccc-CceEEEEeCCCCCCCCcccceeeccCCcccCCCCceEEEecCCC---CCCCCCC-C-CCCCcccccC
Q 042374 339 LHLSPQAFAKMS-NLRLLKFYMPEHDGVPITSSKVHLDQGLEYLPEELRYLHWHEYP---LKTLPFD-F-EPENLTELSL 412 (714)
Q Consensus 339 ~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~---~~~~~~~-~-~~~~L~~L~l 412 (714)
..+++.+|.++. .|+.+.+-.+ +. .+.+....-..+|+.+.+..+. +..++.. | .+.+|+.+.+
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt---------~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~ 121 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VT---------EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPI 121 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CC---------EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGG
T ss_pred eEcCHhhccCCCCcCEEEEECCC-ee---------EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeecc
Confidence 356677777764 4666666332 11 1111111112355555555432 3333322 2 4456666665
Q ss_pred CCCCCccccCCcc--cccccEEeccCCccccccCCCCCCCCCcEEecCCCCCCccCCccccCCCCCCEEecCC
Q 042374 413 PYSKVEQSWGGKR--LLSSKFIDLSHSQYLIRMPDLSEAPNLERINLLNCTNLVSVPSSIQNFNHLSMLCFEG 483 (714)
Q Consensus 413 ~~~~i~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~ 483 (714)
..+ ++.+....+ +.+|+.+.+..+........|..+..|+.+.+..+ +..+....-....|+.+.+..
T Consensus 122 ~~~-~~~I~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~ 191 (394)
T 4gt6_A 122 LDS-VTEIDSEAFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPA 191 (394)
T ss_dssp GTT-CSEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECT
T ss_pred CCc-cceehhhhhhhhcccccccccceeeeecccceecccccccccccce--eeEeccccccccceeEEEECC
Confidence 543 444444433 67777777765432222224667777777777553 333332222234566666644
No 191
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.32 E-value=1e-05 Score=81.93 Aligned_cols=183 Identities=10% Similarity=0.032 Sum_probs=102.5
Q ss_pred hhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHH-----
Q 042374 63 NSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQV----- 137 (714)
Q Consensus 63 ~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 137 (714)
++..+.+.+.+..+ .-.+.+.++|+.|+|||++|+.+++.+....... ... +.... ..+.+....
T Consensus 8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~~~----c~~c~----~c~~~~~~~~~d~~ 77 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQG-HKS----CGHCR----GCQLMQAGTHPDYY 77 (334)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-TBC----CSCSH----HHHHHHHTCCTTEE
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-CCC----CCCCH----HHHHHhcCCCCCEE
Confidence 34455666665432 2245788999999999999999998764322100 000 00000 000000000
Q ss_pred -hCCC-CCcccchhhHHHHHHHh-----cCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCChh-HHH-hcC
Q 042374 138 -LGDK-NLKIGTLVIHQNIRKRL-----RQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDKQ-VLD-KCG 207 (714)
Q Consensus 138 -~~~~-~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~~-v~~-~~~ 207 (714)
+... .......+..+.+.+.+ .+++-++|+|+++.. ....+.+...+.....++.+|++|.+.. +.. ...
T Consensus 78 ~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~S 157 (334)
T 1a5t_A 78 TLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRS 157 (334)
T ss_dssp EECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHT
T ss_pred EEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhh
Confidence 0000 00111122223333333 256789999999865 3445666666654455677777766553 222 223
Q ss_pred CCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHhh
Q 042374 208 VNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVLG 262 (714)
Q Consensus 208 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 262 (714)
....+++++++.++..+++.+.. ... .+.+..+++.++|.|..+..+.
T Consensus 158 Rc~~~~~~~~~~~~~~~~L~~~~----~~~---~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 158 RCRLHYLAPPPEQYAVTWLSREV----TMS---QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHC----CCC---HHHHHHHHHHTTTCHHHHHHTT
T ss_pred cceeeeCCCCCHHHHHHHHHHhc----CCC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 44689999999999999998774 111 1456788999999997665443
No 192
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.30 E-value=5.3e-06 Score=84.12 Aligned_cols=173 Identities=19% Similarity=0.200 Sum_probs=100.2
Q ss_pred CCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccC
Q 042374 57 DGFVGLNSRIEEVKSLLCL-----------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMG 125 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 125 (714)
+.+.|.++.+++|.+.+.. +-...+-|.++|++|.|||.||++++++....|- .+....-.+...+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~---~v~~s~l~sk~vG 224 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFI---RVSGAELVQKYIG 224 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEE---EEEGGGGSCSSTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCce---EEEhHHhhccccc
Confidence 4578899999888876642 1234567899999999999999999998765542 2221111111100
Q ss_pred -hHHHHHHHHHHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCC---------------HHHHHHHhcCCCCC--
Q 042374 126 -AIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG---------------FTQLESLAGELDKF-- 187 (714)
Q Consensus 126 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------------~~~~~~l~~~l~~~-- 187 (714)
....++ +.....-...+++|++|+++.. ...+..++..+...
T Consensus 225 ese~~vr--------------------~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 225 EGSRMVR--------------------ELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp HHHHHHH--------------------HHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred hHHHHHH--------------------HHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence 011111 1112222467899999999642 01123343333222
Q ss_pred CCCcEEEEEcCChh-----HHHhcCCCeEEecCCCCHHHHHHHHHHhhhhcCC-CChhHHHHHHHHHHHhcCCCh
Q 042374 188 TTGSRIIITTRDKQ-----VLDKCGVNYVYEVEGLEHNKAFELFYRKAFRQNN-YPPDFLGLSLEVVHYARNNPL 256 (714)
Q Consensus 188 ~~gs~IliTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~Pl 256 (714)
..+..||.||...+ +.+..+.+..+.++.-+.++..++|..+...... ...+ ...+++.+.|.--
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~SG 355 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCSG 355 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCCH
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCCH
Confidence 23445566665332 2222255678999999999999999877633221 1222 3567777877653
No 193
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.30 E-value=6e-06 Score=82.33 Aligned_cols=174 Identities=14% Similarity=0.148 Sum_probs=98.8
Q ss_pred CCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccC
Q 042374 57 DGFVGLNSRIEEVKSLLCL-----------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMG 125 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 125 (714)
..++|.+..+++|.+++.. +-...+.|.|+|++|+|||+||+.+++.....| +.+.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v~---------- 81 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISIK---------- 81 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEEC----------
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEEE----------
Confidence 4588888888888776642 113456789999999999999999998764322 2222
Q ss_pred hHHHHHHHHHHHhCCCCCcccchhhH-HHHHHHhcCCcEEEEEeCCCCCH---------------HHHHHHhcCCCC--C
Q 042374 126 AIHVRDEVISQVLGDKNLKIGTLVIH-QNIRKRLRQVKMLIVLDAVHDGF---------------TQLESLAGELDK--F 187 (714)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~~---------------~~~~~l~~~l~~--~ 187 (714)
.. ++.....|... ... ..+.......+.++++|+++... .....+...+.. .
T Consensus 82 ~~----~l~~~~~g~~~------~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 82 GP----ELLTMWFGESE------ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp HH----HHHHHHHTTCT------THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred hH----HHHhhhcCchH------HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 11 12223333321 111 22333334567999999996420 112333332221 1
Q ss_pred CCCcEEEEEcCChhHH-Hh-c---CCCeEEecCCCCHHHHHHHHHHhhhhcCC-CChhHHHHHHHHHHHhcCCChh
Q 042374 188 TTGSRIIITTRDKQVL-DK-C---GVNYVYEVEGLEHNKAFELFYRKAFRQNN-YPPDFLGLSLEVVHYARNNPLA 257 (714)
Q Consensus 188 ~~gs~IliTtR~~~v~-~~-~---~~~~~~~l~~L~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~Pla 257 (714)
..+..||.||...... .. . .....+.++..+.++..+++..++..... ...+ ...++..+.|.|-+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 2355677777654322 11 1 34467899999999999998777533221 1111 23455556666543
No 194
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.25 E-value=1.2e-05 Score=83.47 Aligned_cols=181 Identities=14% Similarity=0.081 Sum_probs=98.9
Q ss_pred CCCcccchhhHHHHHhhhcc----------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccC
Q 042374 56 LDGFVGLNSRIEEVKSLLCL----------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMG 125 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 125 (714)
...++|.+..++.+.+++.. .....+.|.|+|++|+|||++|+.++.+....| +.+. .+.
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~---~~v~----~~~--- 183 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATF---FNIS----AAS--- 183 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE---EEEC----SCC---
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE---EEee----HHH---
Confidence 45689999999999887732 112346789999999999999999988754322 2222 111
Q ss_pred hHHHHHHHHHHHhCCCCCcccchhhHHHHH-HHhcCCcEEEEEeCCCCC------------HHHHHHHhcCC---CC-CC
Q 042374 126 AIHVRDEVISQVLGDKNLKIGTLVIHQNIR-KRLRQVKMLIVLDAVHDG------------FTQLESLAGEL---DK-FT 188 (714)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~------------~~~~~~l~~~l---~~-~~ 188 (714)
+.. ...+. .......+. ..-...+.+|+||+++.. ......+...+ .. ..
T Consensus 184 l~~-------~~~g~------~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 184 LTS-------KYVGE------GEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp C--------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred hhc-------cccch------HHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 000 00000 011112222 222445679999999532 01112222221 11 12
Q ss_pred CCcEEEEEcCChh-HHH--hcCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCCh-hhHHh
Q 042374 189 TGSRIIITTRDKQ-VLD--KCGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPL-ALEVL 261 (714)
Q Consensus 189 ~gs~IliTtR~~~-v~~--~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 261 (714)
....||.||.... +.. ..+....+.+...+.++..+++...+......-. .+....+++.+.|..- ++..+
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~--~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT--QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC--HHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHHHHHHH
Confidence 2345555665432 111 1133457889999999999999877643222111 1456788888888654 34333
No 195
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.24 E-value=9.4e-06 Score=82.08 Aligned_cols=177 Identities=15% Similarity=0.139 Sum_probs=102.1
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVI 134 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (714)
..+.++|.+..++.+.+++..+. ..+++.+.|++|+|||++|+.+++..... .+.+. .+ ... ....++.+
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~----~~-~~~-~~~i~~~~ 93 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVN----GS-DCK-IDFVRGPL 93 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEE----TT-TCC-HHHHHTHH
T ss_pred CHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEc----cc-ccC-HHHHHHHH
Confidence 45679999999999999886432 34577888999999999999999876422 22332 11 111 12222222
Q ss_pred HHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCCH--HHHHHHhcCCCCCCCCcEEEEEcCChhH-HHh-cCCCe
Q 042374 135 SQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDGF--TQLESLAGELDKFTTGSRIIITTRDKQV-LDK-CGVNY 210 (714)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~l~~~l~~~~~gs~IliTtR~~~v-~~~-~~~~~ 210 (714)
....... ...+++-++|+||++... ...+.+...+.....+..+|+||....- ... .....
T Consensus 94 ~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~ 158 (324)
T 3u61_B 94 TNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCR 158 (324)
T ss_dssp HHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSE
T ss_pred HHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCc
Confidence 1110000 012467899999998762 3444454444333345678888765431 110 11125
Q ss_pred EEecCCCCHHHHHHHHHH-------hhhhcC-CCChhHHHHHHHHHHHhcCCChhh
Q 042374 211 VYEVEGLEHNKAFELFYR-------KAFRQN-NYPPDFLGLSLEVVHYARNNPLAL 258 (714)
Q Consensus 211 ~~~l~~L~~~~~~~l~~~-------~~~~~~-~~~~~~~~~~~~i~~~~~g~Plai 258 (714)
.+++++++.++..+++.. .+.... ..++ .+....+++.++|.+-.+
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHH
Confidence 799999998885444322 221111 1111 255677888888887643
No 196
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.24 E-value=1e-05 Score=83.13 Aligned_cols=172 Identities=15% Similarity=0.151 Sum_probs=99.1
Q ss_pred CCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccC
Q 042374 57 DGFVGLNSRIEEVKSLLCL-----------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMG 125 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 125 (714)
..+.|.++.+++|.+.+.. +-...+-|.++|++|.|||.||++++++....|- .+....-.+...+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi---~vs~s~L~sk~vG 285 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFI---RVIGSELVQKYVG 285 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEE---EEEGGGGCCCSSS
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeE---EEEhHHhhcccCC
Confidence 4688999999988876532 2234678899999999999999999998765432 2221111111110
Q ss_pred h-HHHHHHHHHHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCC---------------HHHHHHHhcCCCCCC-
Q 042374 126 A-IHVRDEVISQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG---------------FTQLESLAGELDKFT- 188 (714)
Q Consensus 126 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------------~~~~~~l~~~l~~~~- 188 (714)
- ...++ ......-...+++|++|+++.. ......++..+....
T Consensus 286 esek~ir--------------------~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 286 EGARMVR--------------------ELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp HHHHHHH--------------------HHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHH--------------------HHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 0 01111 1122223467899999999642 011222333322222
Q ss_pred -CCcEEEEEcCChh-----HHHhcCCCeEEecCCCCHHHHHHHHHHhhhhcCC-CChhHHHHHHHHHHHhcCCC
Q 042374 189 -TGSRIIITTRDKQ-----VLDKCGVNYVYEVEGLEHNKAFELFYRKAFRQNN-YPPDFLGLSLEVVHYARNNP 255 (714)
Q Consensus 189 -~gs~IliTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~P 255 (714)
.+..||.||...+ +.+..+....++++.-+.++..++|..++..... ...+ ...+++.+.|.-
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 2444566665332 2222246678999999999999999877643221 1122 346677777764
No 197
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.23 E-value=1.5e-05 Score=83.90 Aligned_cols=176 Identities=16% Similarity=0.154 Sum_probs=100.0
Q ss_pred CCCcccchhhHHHHHhhhcc----------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccC
Q 042374 56 LDGFVGLNSRIEEVKSLLCL----------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMG 125 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 125 (714)
...++|.+..++.|.+++.. .....+.|.|+|++|+|||+||+.+++.... ..++. ++.. +
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~----~~~~~----v~~~-~ 203 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFS----ISSS-D 203 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS----SEEEE----ECCC--
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC----CCEEE----EeHH-H
Confidence 35689999999988876631 1123467899999999999999999987621 11221 1110 1
Q ss_pred hHHHHHHHHHHHhCCCCCcccchhhHHHHHH-HhcCCcEEEEEeCCCCC------------HHHHHHHhcCCCCC---CC
Q 042374 126 AIHVRDEVISQVLGDKNLKIGTLVIHQNIRK-RLRQVKMLIVLDAVHDG------------FTQLESLAGELDKF---TT 189 (714)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~------------~~~~~~l~~~l~~~---~~ 189 (714)
+ .....|... .....+.+ .-..++.+|++|+++.. ......+...+... ..
T Consensus 204 ---l----~~~~~g~~~------~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 204 ---L----VSKWLGESE------KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp ---------------CC------CTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred ---H----HhhhcchHH------HHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence 1 111112111 11122222 22457789999999743 11234455544332 23
Q ss_pred CcEEEEEcCChhHH-H--hcCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCC
Q 042374 190 GSRIIITTRDKQVL-D--KCGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNP 255 (714)
Q Consensus 190 gs~IliTtR~~~v~-~--~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 255 (714)
+..||.||...... . .-+....+.++..+.++..+++..++........ ......|++.+.|..
T Consensus 271 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~--~~~l~~la~~t~G~s 337 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT--EADFQELGRKTDGYS 337 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC--HHHHHHHHHHTTTCC
T ss_pred CEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHcCCCC
Confidence 55666666544221 1 1134567889999999999999887643221111 134567888888854
No 198
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.20 E-value=5.4e-06 Score=76.16 Aligned_cols=50 Identities=24% Similarity=0.346 Sum_probs=41.6
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
....++||+.+++.+.+.+... ..+.+.|+|++|+|||++|+.+++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4567999999999999988542 3456789999999999999999987644
No 199
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.18 E-value=1.3e-06 Score=76.47 Aligned_cols=47 Identities=21% Similarity=0.192 Sum_probs=35.9
Q ss_pred CcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 58 GFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 58 ~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
.++|++..++++.+.+..-.....-|.|+|++|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 57999999999888775322233457899999999999999999754
No 200
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.18 E-value=6.1e-05 Score=78.38 Aligned_cols=104 Identities=12% Similarity=0.128 Sum_probs=66.8
Q ss_pred cccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCC--C
Q 042374 560 SILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLR--N 637 (714)
Q Consensus 560 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~ 637 (714)
.|.++..|+.+.+.++. ...-...|.++++|+.+.+. +.++.++... |.++.+|+.+.|..+ .
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~a-------------F~~c~~L~~i~lp~~v~~ 324 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESV-------------FAGCISLKSIDIPEGITQ 324 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTT-------------TTTCTTCCEEECCTTCCE
T ss_pred eeeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCcee-------------ecCCCCcCEEEeCCcccE
Confidence 45566777777765432 11122456667777777764 3455555544 777888888887643 1
Q ss_pred cCc--CCCCCCCCEEECCCCCCcccch-hhccCCCCCeeccccCc
Q 042374 638 YAL--NGCLSSLEYLDLSGNDFESLPA-SIKQLSRLRKLHLCYCD 679 (714)
Q Consensus 638 ~~~--~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~~~ 679 (714)
+.. |..+.+|+.+.|-. .++.+.. ++.+|++|+.+++.++.
T Consensus 325 I~~~aF~~C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 325 ILDDAFAGCEQLERIAIPS-SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp ECTTTTTTCTTCCEEEECT-TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred ehHhHhhCCCCCCEEEECc-ccCEEhHhHhhCCCCCCEEEECCce
Confidence 211 66778888888854 4777754 67888888888887764
No 201
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.15 E-value=1e-05 Score=83.44 Aligned_cols=173 Identities=22% Similarity=0.261 Sum_probs=98.8
Q ss_pred CCCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhccccc
Q 042374 56 LDGFVGLNSRIEEVKSLLCL-----------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKM 124 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 124 (714)
-+.+.|.++.+++|.+.+.. +-...+-|.++|++|.|||.||++++++....|- .+. .......
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~---~v~-~s~l~sk- 254 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFI---FSP-ASGIVDK- 254 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE---EEE-GGGTCCS-
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe-hhhhccc-
Confidence 34578899888888776642 1234678999999999999999999998765432 222 1111100
Q ss_pred ChHHHHHHHHHHHhCCCCCcccchhhHHH-HHHHhcCCcEEEEEeCCCCC---------------HHHHHHHhcCCCCC-
Q 042374 125 GAIHVRDEVISQVLGDKNLKIGTLVIHQN-IRKRLRQVKMLIVLDAVHDG---------------FTQLESLAGELDKF- 187 (714)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~---------------~~~~~~l~~~l~~~- 187 (714)
.... .....+. ....-...+++|++|+++.. ...+..++..+...
T Consensus 255 -----------------~~Ge-se~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 255 -----------------YIGE-SARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp -----------------SSSH-HHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred -----------------cchH-HHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 0000 0111112 22223467899999999632 01123344333222
Q ss_pred -CCCcEEEEEcCChhHHH-h----cCCCeEEecCCCCHHHHHHHHHHhhhhcCC-CChhHHHHHHHHHHHhcCCC
Q 042374 188 -TTGSRIIITTRDKQVLD-K----CGVNYVYEVEGLEHNKAFELFYRKAFRQNN-YPPDFLGLSLEVVHYARNNP 255 (714)
Q Consensus 188 -~~gs~IliTtR~~~v~~-~----~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~P 255 (714)
..+..||.||...+... . .+....++++.-+.++..++|..+...... ...+ ...+++.+.|.-
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 23456676766443221 1 124567889988999999999877643221 2222 345666777754
No 202
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.11 E-value=1.7e-06 Score=88.26 Aligned_cols=68 Identities=10% Similarity=0.084 Sum_probs=34.2
Q ss_pred CCCCCEEEecCCCCCCCCchhhh---ccccccccccCCccccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc
Q 042374 564 LKSLQNLYLIQCFDLENFPEILE---KMEYLNYNALGRTKIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL 640 (714)
Q Consensus 564 l~~L~~L~l~~~~~~~~~~~~l~---~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 640 (714)
+++|++|.+.+|.+....+..+. .+++|++|+|+.|.+..... ..++..+..+++|+.|+++.|.+.+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~---------~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA---------RLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH---------HHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH---------HHHHhhcccCCcceEEECCCCcCCH
Confidence 55666666666554322222221 35566666666666543210 0112224456667777776666654
No 203
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.10 E-value=2.3e-05 Score=79.73 Aligned_cols=179 Identities=14% Similarity=0.164 Sum_probs=101.8
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhc-ccc-eEEeeechhcccccChHHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRH-FQG-KCFMANVREESNKMGAIHVRDE 132 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~-f~~-~~~~~~~~~~~~~~~~~~~~~~ 132 (714)
....++|.+..++.|...+..+ +...+.++|++|+||||+|+.++..+... +.. ...+. .+...... ..++
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~----~~~~~~~~-~ir~ 95 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN----ASDDRGID-VVRN 95 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC----TTSCCSHH-HHHT
T ss_pred cHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc----CcccccHH-HHHH
Confidence 3455789998888888887543 22238899999999999999999876432 111 11111 11111111 1111
Q ss_pred HHHHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCChh-HHH-hcCCC
Q 042374 133 VISQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDKQ-VLD-KCGVN 209 (714)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~~-v~~-~~~~~ 209 (714)
.+..+..... ...+.+-++|+|+++.. ....+.+...+......+.++++|.... +.. .....
T Consensus 96 ~i~~~~~~~~--------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 96 QIKDFASTRQ--------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp HHHHHHHBCC--------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHHhhcc--------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhc
Confidence 2211110000 01134678999999754 2334444444433344566666665432 111 11233
Q ss_pred eEEecCCCCHHHHHHHHHHhhhhcC-CCChhHHHHHHHHHHHhcCCChh
Q 042374 210 YVYEVEGLEHNKAFELFYRKAFRQN-NYPPDFLGLSLEVVHYARNNPLA 257 (714)
Q Consensus 210 ~~~~l~~L~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pla 257 (714)
..+++.+++.++..+.+...+-... ... .+....+++.++|.+--
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEKLKLS---PNAEKALIELSNGDMRR 207 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHH
Confidence 5789999999999998877653221 112 14567888888988764
No 204
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=1.1e-05 Score=83.31 Aligned_cols=172 Identities=17% Similarity=0.194 Sum_probs=97.8
Q ss_pred CCCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhc-ccc
Q 042374 56 LDGFVGLNSRIEEVKSLLCL-----------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREE-SNK 123 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~-~~~ 123 (714)
.+.+.|.++.+++|.+.+.. +-...+-|.++|++|.|||.||++++.+....|- .+. .... +..
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~---~v~-~s~l~~~~ 255 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFL---KLA-APQLVQMY 255 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE---EEE-GGGGCSSC
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEE---EEe-hhhhhhcc
Confidence 35578999999888776531 1234678899999999999999999998755432 222 1111 111
Q ss_pred cCh-HHHHHHHHHHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCC---------------HHHHHHHhcCCCCC
Q 042374 124 MGA-IHVRDEVISQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG---------------FTQLESLAGELDKF 187 (714)
Q Consensus 124 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------------~~~~~~l~~~l~~~ 187 (714)
.+- ...++.+ ....-...+++|++|+++.. ......++..+...
T Consensus 256 vGese~~ir~l--------------------F~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~ 315 (434)
T 4b4t_M 256 IGEGAKLVRDA--------------------FALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF 315 (434)
T ss_dssp SSHHHHHHHHH--------------------HHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHH--------------------HHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence 100 1111111 11122456899999998421 01122344443322
Q ss_pred C--CCcEEEEEcCChhHH-----HhcCCCeEEecCCCCHHHHHHHHHHhhhhcCC-CChhHHHHHHHHHHHhcCCC
Q 042374 188 T--TGSRIIITTRDKQVL-----DKCGVNYVYEVEGLEHNKAFELFYRKAFRQNN-YPPDFLGLSLEVVHYARNNP 255 (714)
Q Consensus 188 ~--~gs~IliTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~P 255 (714)
. .+..||.||...+.. +..+....++++.-+.++..++|..++..... ...+ ...+++.+.|.-
T Consensus 316 ~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 316 SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 2 344566676644322 11234567899999999999999877643221 1222 346677777754
No 205
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.07 E-value=0.00063 Score=70.25 Aligned_cols=123 Identities=11% Similarity=0.089 Sum_probs=64.5
Q ss_pred cCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccccCCCCCcc
Q 042374 537 VGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTFEKGEGTES 616 (714)
Q Consensus 537 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 616 (714)
+..+.+|+.+.+..+ ........+.++..|+.+.+..+ ....-...+.++.+|+.+.+.. .+..++...
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~a-------- 281 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLL-------- 281 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTT--------
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccc--------
Confidence 444555666555442 11222233455666666666443 1111123455555666655543 244444333
Q ss_pred cCCCccCCCCCCCceeccCCCcCc-----CCCCCCCCEEECCCCCCcccch-hhccCCCCCeeccc
Q 042374 617 QLPSSVADTNDLEGLSLYLRNYAL-----NGCLSSLEYLDLSGNDFESLPA-SIKQLSRLRKLHLC 676 (714)
Q Consensus 617 ~l~~~~~~~~~L~~L~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~ 676 (714)
+.++.+|+.+.+..+.+.. +.++.+|+.+.|.. .++.+.. ++.+|++|+.+.+.
T Consensus 282 -----F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 282 -----CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp -----TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCCC
T ss_pred -----cccccccccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEEC
Confidence 5566666666666554433 45566777777754 3666643 56677777777664
No 206
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.05 E-value=3.2e-05 Score=77.66 Aligned_cols=164 Identities=16% Similarity=0.198 Sum_probs=89.3
Q ss_pred CCcccchhhHHHHHhhhcccC-------CCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHH
Q 042374 57 DGFVGLNSRIEEVKSLLCLES-------RDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHV 129 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~~~-------~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 129 (714)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.++......-...+.+. ........ .
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~-~~~~~~~~----~ 91 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID-MTEYMEKH----A 91 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE-GGGCCSTT----H
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee-cccccccc----c
Confidence 358999999998887775421 12357899999999999999999987644323334443 21111111 1
Q ss_pred HHHHHHHHhCCCCCcccchhhHHHHHHHhc-CCcEEEEEeCCCCC-HHHHHHHhcCCCCC----C-------CCcEEEEE
Q 042374 130 RDEVISQVLGDKNLKIGTLVIHQNIRKRLR-QVKMLIVLDAVHDG-FTQLESLAGELDKF----T-------TGSRIIIT 196 (714)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~-~~~~~~l~~~l~~~----~-------~gs~IliT 196 (714)
...++|.......... ...+.+.+. ...-++++|+++.. ......+...+... . +.+.||.|
T Consensus 92 ----~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~t 166 (311)
T 4fcw_A 92 ----VSRLIGAPPGYVGYEE-GGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMT 166 (311)
T ss_dssp ----HHHHHCCCTTSTTTTT-CCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEE
T ss_pred ----HHHhcCCCCccccccc-cchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEe
Confidence 1222333222111110 022333332 33469999999765 22333333322111 0 23347777
Q ss_pred cCCh---------------hH--------HHh------cCCCeEEecCCCCHHHHHHHHHHhh
Q 042374 197 TRDK---------------QV--------LDK------CGVNYVYEVEGLEHNKAFELFYRKA 230 (714)
Q Consensus 197 tR~~---------------~v--------~~~------~~~~~~~~l~~L~~~~~~~l~~~~~ 230 (714)
|... .+ ... ......+.+.+++.++..+++....
T Consensus 167 tn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l 229 (311)
T 4fcw_A 167 SNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQM 229 (311)
T ss_dssp ESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHT
T ss_pred cccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 7651 10 000 1234567788888888888776653
No 207
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.05 E-value=7.6e-07 Score=81.73 Aligned_cols=117 Identities=10% Similarity=0.070 Sum_probs=61.7
Q ss_pred ccCCCCCCcEEecCCC-CCCcc----ccccccCCCCCCEEEecCCCCCCC----CchhhhccccccccccCCccccccCc
Q 042374 536 SVGCLTNLKVLSLSQC-PRLKR----ISTSILKLKSLQNLYLIQCFDLEN----FPEILEKMEYLNYNALGRTKIRELPS 606 (714)
Q Consensus 536 ~~~~l~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~~~~~ 606 (714)
.+...++|++|+|++| .+... +...+...++|++|++++|.+... +...+...++|++|++++|.|..-..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3456677777777777 55332 333455566777777777765421 22334444556666666555542110
Q ss_pred cccCCCCCcccCCCccCCCCCCCceeccCCCcCcCCCCCCCCEEEC--CCCCCc-----ccchhhccCCCCCeeccccCc
Q 042374 607 TFEKGEGTESQLPSSVADTNDLEGLSLYLRNYALNGCLSSLEYLDL--SGNDFE-----SLPASIKQLSRLRKLHLCYCD 679 (714)
Q Consensus 607 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~L~~L~L--~~n~l~-----~lp~~l~~l~~L~~L~l~~~~ 679 (714)
. .+... +...++|++|+| ++|.++ .+...+...++|++|+|++|.
T Consensus 111 ~---------~l~~~-------------------L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 111 L---------ALVEA-------------------LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp H---------HHHHG-------------------GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred H---------HHHHH-------------------HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 0 01111 223345666666 556655 244455566667777776665
Q ss_pred c
Q 042374 680 K 680 (714)
Q Consensus 680 ~ 680 (714)
+
T Consensus 163 i 163 (185)
T 1io0_A 163 Q 163 (185)
T ss_dssp H
T ss_pred C
Confidence 3
No 208
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=1.9e-05 Score=80.31 Aligned_cols=171 Identities=19% Similarity=0.204 Sum_probs=96.0
Q ss_pred CCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechh-ccccc
Q 042374 57 DGFVGLNSRIEEVKSLLCL-----------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVRE-ESNKM 124 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~-~~~~~ 124 (714)
+.+.|.++.+++|.+.+.. +-...+-|.++|++|.|||.||++++.+....|- .+. ... .+...
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi---~v~-~s~l~sk~v 257 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL---RIV-GSELIQKYL 257 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEE---EEE-SGGGCCSSS
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEE---EEE-HHHhhhccC
Confidence 4467889888888776532 1134577999999999999999999998765432 122 111 11110
Q ss_pred ChHHHHHHHHHHHhCCCCCcccchhhHHHHH-HHhcCCcEEEEEeCCCCC---------------HHHHHHHhcCCCCC-
Q 042374 125 GAIHVRDEVISQVLGDKNLKIGTLVIHQNIR-KRLRQVKMLIVLDAVHDG---------------FTQLESLAGELDKF- 187 (714)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~---------------~~~~~~l~~~l~~~- 187 (714)
.- ....++.+. ..-...+++|++|+++.. ...+..++..+...
T Consensus 258 Ge--------------------sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 258 GD--------------------GPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp SH--------------------HHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred ch--------------------HHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 00 011112222 222456899999998532 01122333322211
Q ss_pred -CCCcEEEEEcCChhHH-Hhc----CCCeEEecCCCCHHHHHHHHHHhhhhcCC-CChhHHHHHHHHHHHhcCCC
Q 042374 188 -TTGSRIIITTRDKQVL-DKC----GVNYVYEVEGLEHNKAFELFYRKAFRQNN-YPPDFLGLSLEVVHYARNNP 255 (714)
Q Consensus 188 -~~gs~IliTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~P 255 (714)
..+..||.||...+.. .++ +.+..+.++.-+.++..++|..++..... ...+ ...+++.+.|.-
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 2344556666544322 221 34567889989999999999877633221 1222 345667777754
No 209
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.00 E-value=3.2e-05 Score=76.60 Aligned_cols=146 Identities=10% Similarity=0.033 Sum_probs=88.5
Q ss_pred cchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHh---hcccceEEeeechhccc-ccChHHHHHHHHHH
Q 042374 61 GLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQIS---RHFQGKCFMANVREESN-KMGAIHVRDEVISQ 136 (714)
Q Consensus 61 Gr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~---~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 136 (714)
|-++.++.|.+.+..+. .+...++|++|+||||+|+.+++... .......++. .+. ...+ +.+++++..
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~----~~~~~~~i-d~ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID----PEGENIGI-DDIRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC----CSSSCBCH-HHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc----CCcCCCCH-HHHHHHHHH
Confidence 44566777777775443 67889999999999999999987531 1122333433 111 1222 122333333
Q ss_pred HhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCCh-hHHHhcCCCeEEec
Q 042374 137 VLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDK-QVLDKCGVNYVYEV 214 (714)
Q Consensus 137 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~-~v~~~~~~~~~~~l 214 (714)
+.... ..+++-++|+|+++.. ....+.|...+....+.+.+|++|.+. .+....... .+++
T Consensus 74 ~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 74 LNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp HTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred Hhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 21110 1245678999999765 345666766665545667777666544 333333333 8999
Q ss_pred CCCCHHHHHHHHHHhh
Q 042374 215 EGLEHNKAFELFYRKA 230 (714)
Q Consensus 215 ~~L~~~~~~~l~~~~~ 230 (714)
+++++++..+.+.+.+
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998775
No 210
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=3.6e-05 Score=79.29 Aligned_cols=172 Identities=18% Similarity=0.178 Sum_probs=93.2
Q ss_pred CCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccC
Q 042374 57 DGFVGLNSRIEEVKSLLCL-----------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMG 125 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 125 (714)
..+.|.++.+++|.+.+.. +-...+-|.++|++|+|||+||+++++.....|- .+....-.+...+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~---~v~~~~l~~~~~G 248 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFI---RVNGSEFVHKYLG 248 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEE---EEEGGGTCCSSCS
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE---EEecchhhccccc
Confidence 4578899888888776632 2234667899999999999999999998765432 2221110111100
Q ss_pred -hHHHHHHHHHHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCC---------------HHHHHHHhcCCCC--C
Q 042374 126 -AIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG---------------FTQLESLAGELDK--F 187 (714)
Q Consensus 126 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------------~~~~~~l~~~l~~--~ 187 (714)
....++ +.+...-...++++++|+++.. ...+..++..+.. .
T Consensus 249 e~e~~ir--------------------~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 249 EGPRMVR--------------------DVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp HHHHHHH--------------------HHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred hhHHHHH--------------------HHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 011111 1122223456899999998321 0112333333321 2
Q ss_pred CCCcEEEEEcCChh-----HHHhcCCCeEEecCCC-CHHHHHHHHHHhhhhcCC-CChhHHHHHHHHHHHhcCCC
Q 042374 188 TTGSRIIITTRDKQ-----VLDKCGVNYVYEVEGL-EHNKAFELFYRKAFRQNN-YPPDFLGLSLEVVHYARNNP 255 (714)
Q Consensus 188 ~~gs~IliTtR~~~-----v~~~~~~~~~~~l~~L-~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~P 255 (714)
..+..||.||...+ +.+..+....++++++ +.++..++|..++..... ...+ ...+++.+.|.-
T Consensus 309 ~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 23445666665432 2222234456888766 566667777766533221 1222 346667777754
No 211
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.99 E-value=2e-05 Score=83.44 Aligned_cols=173 Identities=15% Similarity=0.172 Sum_probs=96.8
Q ss_pred CCCcccchhhHHHHHhhhccc-----------CCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhccccc
Q 042374 56 LDGFVGLNSRIEEVKSLLCLE-----------SRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKM 124 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~~-----------~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 124 (714)
...++|.+..++++.+++... ....+.|.|+|++|+|||++|+.++++....| +.+. ...
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~f---v~vn-~~~----- 273 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPE----- 273 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEE---EEEE-HHH-----
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCE---EEEE-chH-----
Confidence 356899999999998877531 23455789999999999999999988763322 2222 111
Q ss_pred ChHHHHHHHHHHHhCCCCCcccchhhH-HHHHHHhcCCcEEEEEeCCCC---------C---HHHHHHHhcCCCC--CCC
Q 042374 125 GAIHVRDEVISQVLGDKNLKIGTLVIH-QNIRKRLRQVKMLIVLDAVHD---------G---FTQLESLAGELDK--FTT 189 (714)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~---------~---~~~~~~l~~~l~~--~~~ 189 (714)
+.....+ ...... ..+.....+++.+|+||+++. . ......|...+.. ...
T Consensus 274 --------l~~~~~g------~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~ 339 (489)
T 3hu3_A 274 --------IMSKLAG------ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (489)
T ss_dssp --------HHTSCTT------HHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTS
T ss_pred --------hhhhhcc------hhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCC
Confidence 1100000 001111 333344456788999999831 1 0112233332221 123
Q ss_pred CcEEEEEcCChhH-HHh----cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCC
Q 042374 190 GSRIIITTRDKQV-LDK----CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNN 254 (714)
Q Consensus 190 gs~IliTtR~~~v-~~~----~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 254 (714)
+..||.||..... ... ......+.++..+.++..+++..++........ ....++++.+.|.
T Consensus 340 ~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~---~~l~~la~~t~g~ 406 (489)
T 3hu3_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGH 406 (489)
T ss_dssp CEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT---CCHHHHHHTCTTC
T ss_pred ceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch---hhHHHHHHHccCC
Confidence 4456666664422 111 133457899999999999999887643221111 1124455566654
No 212
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.99 E-value=1.1e-05 Score=92.64 Aligned_cols=154 Identities=16% Similarity=0.132 Sum_probs=82.1
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcc------cc-eEEeeechhcccccChH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHF------QG-KCFMANVREESNKMGAI 127 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f------~~-~~~~~~~~~~~~~~~~~ 127 (714)
..+.+|||+.+++.+.+.+.... ...+.|+|++|+|||++|+.+++.+.... .. ++++. ...
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~-~~~-------- 236 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ-MGS-------- 236 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC-C----------
T ss_pred CCcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee-hHH--------
Confidence 56779999999999999885432 33568999999999999999999764311 22 22222 100
Q ss_pred HHHHHHHHHHhCCCCCcccchhhHHHHHHHh-c-CCcEEEEEeCCCCCH---------HHHHHHhcCCCCCCCCcEEEEE
Q 042374 128 HVRDEVISQVLGDKNLKIGTLVIHQNIRKRL-R-QVKMLIVLDAVHDGF---------TQLESLAGELDKFTTGSRIIIT 196 (714)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~-~k~~LlVlDdv~~~~---------~~~~~l~~~l~~~~~gs~IliT 196 (714)
+.. +.. ...........+.+.+ . +++.+|++|+++... +..+.+...+. ..+..+|.+
T Consensus 237 -l~~-------g~~-~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~a 305 (854)
T 1qvr_A 237 -LLA-------GAK-YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGA 305 (854)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEE
T ss_pred -hhc-------cCc-cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEe
Confidence 000 000 0001111122333333 2 467899999996541 11112222221 123345555
Q ss_pred cCChhHH-----Hh-cCCCeEEecCCCCHHHHHHHHHHhh
Q 042374 197 TRDKQVL-----DK-CGVNYVYEVEGLEHNKAFELFYRKA 230 (714)
Q Consensus 197 tR~~~v~-----~~-~~~~~~~~l~~L~~~~~~~l~~~~~ 230 (714)
|...... .. ......+.+++++.++..+++....
T Consensus 306 t~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 306 TTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp ECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred cCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 5443321 11 1122358899999999999996543
No 213
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.98 E-value=4.1e-05 Score=81.24 Aligned_cols=147 Identities=16% Similarity=0.146 Sum_probs=81.6
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcc------cceEEeeechhcccccChHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHF------QGKCFMANVREESNKMGAIH 128 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 128 (714)
..+.+|||+.+++.+.+.+.... ..-+.|+|++|+|||++|+.++..+...+ ...++..+. .
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~---~------- 245 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---G------- 245 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC---C-------
Confidence 45679999999999999886432 33467999999999999999999864422 111221110 0
Q ss_pred HHHHHHHHHhCCCCCcccchhhHHH-HHHHhcCCcEEEEEeCCCCCHHHHHHHhcCCCCCCCCcEEEEEcCChhHHH---
Q 042374 129 VRDEVISQVLGDKNLKIGTLVIHQN-IRKRLRQVKMLIVLDAVHDGFTQLESLAGELDKFTTGSRIIITTRDKQVLD--- 204 (714)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~v~~--- 204 (714)
....|.. ...... +.+.-..++.++++|. .. +....+...+. ....++|.+|.......
T Consensus 246 ------~~~~g~~------e~~~~~~~~~~~~~~~~iLfiD~--~~-~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~ 308 (468)
T 3pxg_A 246 ------TKYRGEF------EDRLKKVMDEIRQAGNIILFIDA--AI-DASNILKPSLA--RGELQCIGATTLDEYRKYIE 308 (468)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEECC-----------CCCTT--SSSCEEEEECCTTTTHHHHT
T ss_pred ------ccccchH------HHHHHHHHHHHHhcCCeEEEEeC--ch-hHHHHHHHhhc--CCCEEEEecCCHHHHHHHhh
Confidence 0001110 011122 2223345678899992 21 33334444432 12345665555443111
Q ss_pred ----hcCCCeEEecCCCCHHHHHHHHHHhh
Q 042374 205 ----KCGVNYVYEVEGLEHNKAFELFYRKA 230 (714)
Q Consensus 205 ----~~~~~~~~~l~~L~~~~~~~l~~~~~ 230 (714)
....-..+.++..+.++..+++...+
T Consensus 309 ~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11122469999999999999998765
No 214
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.97 E-value=3.1e-05 Score=75.67 Aligned_cols=49 Identities=29% Similarity=0.212 Sum_probs=34.7
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 57 DGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
+.++|.+..+.++.+.+..-......|.|+|.+|+|||++|+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4589999998888766643222234678999999999999999998643
No 215
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.94 E-value=2.1e-05 Score=78.89 Aligned_cols=50 Identities=20% Similarity=0.202 Sum_probs=38.8
Q ss_pred CCcccchhhHHHHHhhhcc------------cCCCeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 57 DGFVGLNSRIEEVKSLLCL------------ESRDVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~------------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
..++|++..++.+...+.. .......+.++|++|+|||++|+.+++....
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4589999999988877643 0123456889999999999999999987643
No 216
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.94 E-value=4.1e-05 Score=76.12 Aligned_cols=48 Identities=19% Similarity=0.260 Sum_probs=37.7
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 57 DGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
+.++|++..++++.+.+..-......|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 458999999998888775422233457899999999999999999854
No 217
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.93 E-value=2.3e-05 Score=71.53 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=29.6
Q ss_pred hhHHHHHhhhcc-cCCCeEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 64 SRIEEVKSLLCL-ESRDVRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 64 ~~~~~l~~~l~~-~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
..++.+.+++.. ...+.+.++|+|++|+||||||+.++....
T Consensus 21 ~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 21 RALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344444444432 112356899999999999999999999765
No 218
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.91 E-value=0.00013 Score=82.88 Aligned_cols=155 Identities=16% Similarity=0.221 Sum_probs=89.2
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhc------ccceEEeeechhcccccChHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRH------FQGKCFMANVREESNKMGAIH 128 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~~ 128 (714)
..+.++||+.+++.+.+.+... ...-+.|+|++|+|||++|+.++..+... ....+|........
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~------- 254 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL------- 254 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC----------
T ss_pred CCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh-------
Confidence 4567999999999999988644 23456899999999999999999876432 12233322111000
Q ss_pred HHHHHHHHHhCCCCCcccchh-hHHHHHHHh-cCCcEEEEEeCCCCC---------HHHHHHHhcCCCCCCCCcEEEEEc
Q 042374 129 VRDEVISQVLGDKNLKIGTLV-IHQNIRKRL-RQVKMLIVLDAVHDG---------FTQLESLAGELDKFTTGSRIIITT 197 (714)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l-~~k~~LlVlDdv~~~---------~~~~~~l~~~l~~~~~gs~IliTt 197 (714)
.+.. ..+..+ ....+.+.+ ..++.++++|+++.. ......+...+.. ..+..+|.+|
T Consensus 255 ---------~~~~--~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at 322 (758)
T 1r6b_X 255 ---------AGTK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGST 322 (758)
T ss_dssp ---------CCCC--CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEE
T ss_pred ---------cccc--ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEe
Confidence 0111 111111 223333333 345789999999643 1222233333322 2344566666
Q ss_pred CChhHHHh-------cCCCeEEecCCCCHHHHHHHHHHhh
Q 042374 198 RDKQVLDK-------CGVNYVYEVEGLEHNKAFELFYRKA 230 (714)
Q Consensus 198 R~~~v~~~-------~~~~~~~~l~~L~~~~~~~l~~~~~ 230 (714)
...+.... ......+.++..+.++..+++...+
T Consensus 323 ~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred CchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 54432111 1112368999999999999887654
No 219
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.90 E-value=0.00043 Score=73.18 Aligned_cols=95 Identities=12% Similarity=0.026 Sum_probs=57.3
Q ss_pred EEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEE-EE---------cC----ChhHH-HhcCCCeEEecCCCCHHHHHHHH
Q 042374 163 MLIVLDAVHDG-FTQLESLAGELDKFTTGSRII-IT---------TR----DKQVL-DKCGVNYVYEVEGLEHNKAFELF 226 (714)
Q Consensus 163 ~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~Il-iT---------tR----~~~v~-~~~~~~~~~~l~~L~~~~~~~l~ 226 (714)
-++++|+++.. .+..+.|...+...... .+| .| |. ...+. ........+.+++++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 38999999765 35566776666543334 344 44 32 11111 11223345799999999999999
Q ss_pred HHhhhhcC-CCChhHHHHHHHHHHHh-cCCChhhHHh
Q 042374 227 YRKAFRQN-NYPPDFLGLSLEVVHYA-RNNPLALEVL 261 (714)
Q Consensus 227 ~~~~~~~~-~~~~~~~~~~~~i~~~~-~g~Plai~~~ 261 (714)
..++.... ..++ +....|++.+ .|.|..+..+
T Consensus 376 ~~~~~~~~~~~~~---~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 376 KIRAQTEGINISE---EALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHTCCBCH---HHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHhCCCCCH---HHHHHHHHHccCCCHHHHHHH
Confidence 88763222 1222 4567778887 7888765444
No 220
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.90 E-value=0.00012 Score=74.09 Aligned_cols=175 Identities=17% Similarity=0.135 Sum_probs=96.6
Q ss_pred CCCCcccchhhHHHHHhhhccc---CCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLE---SRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRD 131 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~---~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 131 (714)
....++|.+..++.+...+... ......+.|+|++|+||||||+.++......|. ... . .......+
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~s-g---~~~~~~~~--- 92 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTS-G---PVLVKQGD--- 92 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEE-T---TTCCSHHH---
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe-c---hHhcCHHH---
Confidence 4466889888888777666432 223467899999999999999999997743321 111 0 00000000
Q ss_pred HHHHHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCC-HHHHHHHhcCCCCC--------C----------CCcE
Q 042374 132 EVISQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDG-FTQLESLAGELDKF--------T----------TGSR 192 (714)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~l~~~l~~~--------~----------~gs~ 192 (714)
...+...+ .++-++++|++... ....+.+...+... + +...
T Consensus 93 -------------------l~~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 93 -------------------MAAILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp -------------------HHHHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred -------------------HHHHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 01111112 23447778887654 12222222111000 0 1112
Q ss_pred E-EEEcCChhHHHhc--CCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCChhhHHh
Q 042374 193 I-IITTRDKQVLDKC--GVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNPLALEVL 261 (714)
Q Consensus 193 I-liTtR~~~v~~~~--~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 261 (714)
+ ..|++...+.... +....+.+++.+.++..+++.+.+....... ..+.+..|++.+.|.|-.+..+
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~--~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEI--EDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCB--CHHHHHHHHHTSTTCHHHHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHhcCCChHHHHHH
Confidence 2 2355543332221 2334688999999999999988764322111 1256888999999999765443
No 221
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.89 E-value=4.3e-06 Score=76.64 Aligned_cols=86 Identities=13% Similarity=0.076 Sum_probs=65.8
Q ss_pred ccccceEecccc-cce-----EeccccCCCCCCcEEecCCCCCCcc----ccccccCCCCCCEEEecCCCCCCC----Cc
Q 042374 517 SGSVTKLILWET-AIK-----EVPSSVGCLTNLKVLSLSQCPRLKR----ISTSILKLKSLQNLYLIQCFDLEN----FP 582 (714)
Q Consensus 517 ~~~L~~L~l~~~-~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~ 582 (714)
.++|++|+|++| .+. .+...+...++|++|+|++|.+... +...+...++|++|++++|.+... +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 457999999999 776 3555677789999999999987543 344566678999999999987642 34
Q ss_pred hhhhcccccccccc--CCcccc
Q 042374 583 EILEKMEYLNYNAL--GRTKIR 602 (714)
Q Consensus 583 ~~l~~l~~L~~L~l--~~~~l~ 602 (714)
..+...++|++|++ ++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHhCCCceEEEecCCCCCCC
Confidence 55667778888888 667765
No 222
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.88 E-value=2.8e-06 Score=74.17 Aligned_cols=48 Identities=17% Similarity=0.078 Sum_probs=33.9
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 57 DGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
..++|++..++++.+.+..-.....-|.|+|++|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 358999999988888775321223347899999999999999998643
No 223
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.83 E-value=8.2e-05 Score=78.08 Aligned_cols=173 Identities=16% Similarity=0.149 Sum_probs=96.1
Q ss_pred CCcccchhhHHHHHhhhcc--c--------CCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccCh
Q 042374 57 DGFVGLNSRIEEVKSLLCL--E--------SRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGA 126 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~--~--------~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 126 (714)
..++|.++.++++.+++.. . ..-.+-|.|+|++|+|||+||+.++.+....| +.+. .......+
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f---~~is-~~~~~~~~-- 89 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF---FHIS-GSDFVELF-- 89 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE---EEEE-GGGTTTCC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe---eeCC-HHHHHHHH--
Confidence 4588888877777665431 1 11234588999999999999999998764433 2222 11111100
Q ss_pred HHHHHHHHHHHhCCCCCcccchhhH-HHHHHHhcCCcEEEEEeCCCCC---------------HHHHHHHhcCCCC--CC
Q 042374 127 IHVRDEVISQVLGDKNLKIGTLVIH-QNIRKRLRQVKMLIVLDAVHDG---------------FTQLESLAGELDK--FT 188 (714)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~---------------~~~~~~l~~~l~~--~~ 188 (714)
.| .. .... ..+.......+.+|++|+++.. ...+..+...+.. ..
T Consensus 90 -----------~g-----~~-~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 90 -----------VG-----VG-AARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp -----------TT-----HH-HHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred -----------hc-----cc-HHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 00 00 1111 2333344567899999999542 0123333332221 12
Q ss_pred CCcEEEEEcCChhHHH-h-c---CCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCC
Q 042374 189 TGSRIIITTRDKQVLD-K-C---GVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNP 255 (714)
Q Consensus 189 ~gs~IliTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 255 (714)
.+..||.||...+... . . +....+.++..+.++..+++..++......+ + .....+++.+.|..
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~-~--v~l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAE-D--VNLEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCT-T--CCHHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcc-h--hhHHHHHHhcCCCc
Confidence 3556677776654322 1 1 3345788999999999998877654322111 1 01344677788877
No 224
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.83 E-value=9.5e-06 Score=79.55 Aligned_cols=153 Identities=21% Similarity=0.237 Sum_probs=83.0
Q ss_pred CCCcccchhhHHHHHhhhcc----------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccC
Q 042374 56 LDGFVGLNSRIEEVKSLLCL----------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMG 125 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 125 (714)
...++|.+..++.+.+++.. +....+.+.|+|++|+|||++|+.++++....|-. +. .+.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v~----~~~--- 79 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---MG----GSS--- 79 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---CC----SCT---
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---ec----hHH---
Confidence 45689999888888776541 11123347899999999999999999876543311 11 000
Q ss_pred hHHHHHHHHHHHhCCCCCcccchhhHHHHHHHhcCCcEEEEEeCCCCCHH----------------HHHHHhcCCCCCC-
Q 042374 126 AIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRLRQVKMLIVLDAVHDGFT----------------QLESLAGELDKFT- 188 (714)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~l~~~l~~~~- 188 (714)
+. ....+..... .. ..+......++.+|++|+++.... .+..+...+....
T Consensus 80 ~~-------~~~~~~~~~~---~~--~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (268)
T 2r62_A 80 FI-------EMFVGLGASR---VR--DLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS 147 (268)
T ss_dssp TT-------TSCSSSCSSS---SS--TTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC
T ss_pred HH-------HhhcchHHHH---HH--HHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc
Confidence 00 0001111110 00 222223334668999999964300 1222333332211
Q ss_pred --CCcEEEEEcCChhHHH-h-c---CCCeEEecCCCCHHHHHHHHHHhh
Q 042374 189 --TGSRIIITTRDKQVLD-K-C---GVNYVYEVEGLEHNKAFELFYRKA 230 (714)
Q Consensus 189 --~gs~IliTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~l~~~~~ 230 (714)
....||.||....... . . .....+.++..+.++..+++...+
T Consensus 148 ~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 148 ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 1245666666543211 1 1 233567888889888888887665
No 225
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.81 E-value=6.3e-06 Score=79.45 Aligned_cols=53 Identities=25% Similarity=0.296 Sum_probs=34.9
Q ss_pred CCCCCCEEECCCCCCcccchhhccCC--CCCeeccccCccccccCC----------CcCcccEeec
Q 042374 643 CLSSLEYLDLSGNDFESLPASIKQLS--RLRKLHLCYCDKLQSIPE----------LPLSLKWLDA 696 (714)
Q Consensus 643 ~l~~L~~L~L~~n~l~~lp~~l~~l~--~L~~L~l~~~~~~~~lp~----------~~~~L~~L~l 696 (714)
.+++|+.|+|++|+++.+. .+..+. +|++|+|++|++.+.+|. .+|+|+.|+=
T Consensus 194 ~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 194 KAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp HSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 4667777777777777653 233333 788888888887776663 3566666653
No 226
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.75 E-value=0.00017 Score=81.81 Aligned_cols=147 Identities=16% Similarity=0.122 Sum_probs=82.6
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcc------cceEEeeechhcccccChHH
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHF------QGKCFMANVREESNKMGAIH 128 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 128 (714)
..+.+|||+.+++.+...+.... ..-+.++|++|+|||++|+.+++.+.... ...++.. +.
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~-----~~------ 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL-----DM------ 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe-----cc------
Confidence 45679999999999999886532 33478999999999999999999763321 1122211 00
Q ss_pred HHHHHHHHHhCCCCCcccchhhH-HHHHHHhcCCcEEEEEeCCCCCHHHHHHHhcCCCCCCCCcEEEEEcCChhHHH---
Q 042374 129 VRDEVISQVLGDKNLKIGTLVIH-QNIRKRLRQVKMLIVLDAVHDGFTQLESLAGELDKFTTGSRIIITTRDKQVLD--- 204 (714)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~v~~--- 204 (714)
.....|. ..... ..+.+....++.++++|. .. +..+.+...+. ....++|.||.......
T Consensus 245 -----g~~~~G~------~e~~l~~~~~~~~~~~~~iLfiD~--~~-~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~ 308 (758)
T 3pxi_A 245 -----GTKYRGE------FEDRLKKVMDEIRQAGNIILFIDA--AI-DASNILKPSLA--RGELQCIGATTLDEYRKYIE 308 (758)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEECC-----------CCCTT--SSSCEEEEECCTTTTHHHHT
T ss_pred -----cccccch------HHHHHHHHHHHHHhcCCEEEEEcC--ch-hHHHHHHHHHh--cCCEEEEeCCChHHHHHHhh
Confidence 0000010 11112 223333346778999992 21 33334444433 22345666665443111
Q ss_pred ---h-cCCCeEEecCCCCHHHHHHHHHHhh
Q 042374 205 ---K-CGVNYVYEVEGLEHNKAFELFYRKA 230 (714)
Q Consensus 205 ---~-~~~~~~~~l~~L~~~~~~~l~~~~~ 230 (714)
. ...-..+.++..+.++..+++....
T Consensus 309 ~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred ccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 0 1112569999999999999998654
No 227
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.75 E-value=0.0045 Score=63.74 Aligned_cols=114 Identities=10% Similarity=0.030 Sum_probs=71.5
Q ss_pred ceEecc-ccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCCCCCchhhhccccccccccCCccccccCccc
Q 042374 530 IKEVPS-SVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDLENFPEILEKMEYLNYNALGRTKIRELPSTF 608 (714)
Q Consensus 530 i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~ 608 (714)
+..++. .+..+.+|+.+.+..+ ....-...+.++.+|+.+.+..+ ....-...|..+++|+.+.+.++.++.++...
T Consensus 228 ~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~a 305 (379)
T 4h09_A 228 VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRV 305 (379)
T ss_dssp CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTT
T ss_pred eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhh
Confidence 344433 3667778888887664 22222345667778888877553 22212245777888888888777777776654
Q ss_pred cCCCCCcccCCCccCCCCCCCceeccCCCcCc-----CCCCCCCCEEECCCCCCccc
Q 042374 609 EKGEGTESQLPSSVADTNDLEGLSLYLRNYAL-----NGCLSSLEYLDLSGNDFESL 660 (714)
Q Consensus 609 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~l 660 (714)
|.++.+|+.+.|..+ +.. +.++.+|+.+.+..+ ++.+
T Consensus 306 -------------F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I 347 (379)
T 4h09_A 306 -------------FMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLI 347 (379)
T ss_dssp -------------TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEE
T ss_pred -------------hcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEE
Confidence 777888888887543 222 566777777777543 5554
No 228
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.75 E-value=7.9e-05 Score=69.34 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=40.0
Q ss_pred CCCcccchh----hHHHHHhhhcccCC--CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 56 LDGFVGLNS----RIEEVKSLLCLESR--DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 56 ~~~~vGr~~----~~~~l~~~l~~~~~--~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
.+.|++.+. .++.+.+++..... ..+.+.|+|++|+|||+||+.+++....+...++|+.
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 455666543 33444555543221 1267899999999999999999998766555566664
No 229
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.74 E-value=0.00024 Score=68.96 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=81.7
Q ss_pred CCCcccchhhHHHHHhhhcc---c-------CCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccC
Q 042374 56 LDGFVGLNSRIEEVKSLLCL---E-------SRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMG 125 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~---~-------~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 125 (714)
...++|.+..++++.+++.. . ....+-+.|+|++|+||||+|+.+++.....| +.+... .....
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~~~-~~~~~-- 84 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTISGS-DFVEM-- 84 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEECSC-SSTTS--
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEeHH-HHHHH--
Confidence 34578888877776654421 0 01234588999999999999999998764332 333210 00000
Q ss_pred hHHHHHHHHHHHhCCCCCcccchhhH-HHHHHHhcCCcEEEEEeCCCCC---------------HHHHHHHhcCCCC--C
Q 042374 126 AIHVRDEVISQVLGDKNLKIGTLVIH-QNIRKRLRQVKMLIVLDAVHDG---------------FTQLESLAGELDK--F 187 (714)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~---------------~~~~~~l~~~l~~--~ 187 (714)
..+ . ..... ..+.......+.++++|+++.. ......+...+.. .
T Consensus 85 -----------~~~-----~-~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (257)
T 1lv7_A 85 -----------FVG-----V-GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 147 (257)
T ss_dssp -----------CCC-----C-CHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS
T ss_pred -----------hhh-----h-hHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc
Confidence 001 0 01111 2222233455689999998311 0112233222211 1
Q ss_pred CCCcEEEEEcCChh-HHHhc----CCCeEEecCCCCHHHHHHHHHHhh
Q 042374 188 TTGSRIIITTRDKQ-VLDKC----GVNYVYEVEGLEHNKAFELFYRKA 230 (714)
Q Consensus 188 ~~gs~IliTtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~l~~~~~ 230 (714)
..+..||.||...+ +.... .....+.++..+.++..+++..++
T Consensus 148 ~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 23455666666543 21111 234578888889999888887765
No 230
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.74 E-value=6.7e-05 Score=65.61 Aligned_cols=37 Identities=19% Similarity=0.371 Sum_probs=28.0
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
....++|+|+.|+|||||++.++......-..++++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 3458899999999999999999987654312255554
No 231
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.71 E-value=1.5e-05 Score=70.96 Aligned_cols=78 Identities=13% Similarity=0.143 Sum_probs=46.5
Q ss_pred CCCCceeccCCCcCc-----CCCCCCCCEEECCCCC-Cccc-chhhcc----CCCCCeeccccCcccc-----ccCCCcC
Q 042374 626 NDLEGLSLYLRNYAL-----NGCLSSLEYLDLSGND-FESL-PASIKQ----LSRLRKLHLCYCDKLQ-----SIPELPL 689 (714)
Q Consensus 626 ~~L~~L~l~~~~~~~-----~~~l~~L~~L~L~~n~-l~~l-p~~l~~----l~~L~~L~l~~~~~~~-----~lp~~~~ 689 (714)
..|+.|++++|.+++ +..+++|+.|+|++|. +++- -..+.. +++|++|+|++|+..+ .+.. ++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~-~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-FR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-CT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-CC
Confidence 456666666666555 4566777777777773 5521 112333 2467777777776432 2322 46
Q ss_pred cccEeecccCccccc
Q 042374 690 SLKWLDASNCERLQT 704 (714)
Q Consensus 690 ~L~~L~l~~c~~l~~ 704 (714)
+|+.|++++|+.++.
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 777777777776654
No 232
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.65 E-value=0.00019 Score=81.33 Aligned_cols=150 Identities=17% Similarity=0.183 Sum_probs=84.7
Q ss_pred CCcccchhhHHHHHhhhcccC-------CCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHH
Q 042374 57 DGFVGLNSRIEEVKSLLCLES-------RDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHV 129 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~~~-------~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 129 (714)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.+++.....-...+.+. ...........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc--
Confidence 468999998888877775311 12347899999999999999999987643333344444 22222111110
Q ss_pred HHHHHHHHhCCCCCcccchhhHHHHHHHhc-CCcEEEEEeCCCCC-HHHHHHHhcCCCC-----------CCCCcEEEEE
Q 042374 130 RDEVISQVLGDKNLKIGTLVIHQNIRKRLR-QVKMLIVLDAVHDG-FTQLESLAGELDK-----------FTTGSRIIIT 196 (714)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~-~~~~~~l~~~l~~-----------~~~gs~IliT 196 (714)
. ..+.+.++ ...-+++||+++.. .+....|...+.. ......||+|
T Consensus 568 ------------------~---~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 568 ------------------G---GQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp ------------------------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred ------------------c---chhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 0 11111221 23348999999765 2333333332211 1235578888
Q ss_pred cCCh-----hH----HH-----h-cCCCeEEecCCCCHHHHHHHHHHhh
Q 042374 197 TRDK-----QV----LD-----K-CGVNYVYEVEGLEHNKAFELFYRKA 230 (714)
Q Consensus 197 tR~~-----~v----~~-----~-~~~~~~~~l~~L~~~~~~~l~~~~~ 230 (714)
|... .+ .. . .+....+.+.+++.++..+++...+
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 8731 11 11 1 1334689999999999988886654
No 233
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.62 E-value=6.1e-05 Score=83.76 Aligned_cols=174 Identities=14% Similarity=0.157 Sum_probs=98.4
Q ss_pred CCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccC
Q 042374 57 DGFVGLNSRIEEVKSLLCL-----------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMG 125 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 125 (714)
+.+.|.++.+++|.+++.. +....+-|.++|++|+|||+||+.++++...+| +.+... .
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~---~~v~~~-~------ 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLINGP-E------ 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE---EEEEHH-H------
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE---EEEEhH-H------
Confidence 4578899888888776532 113457899999999999999999998765432 223211 1
Q ss_pred hHHHHHHHHHHHhCCCCCcccchhhH-HHHHHHhcCCcEEEEEeCCCCC------------HHHHHHHhcCCCCC--CCC
Q 042374 126 AIHVRDEVISQVLGDKNLKIGTLVIH-QNIRKRLRQVKMLIVLDAVHDG------------FTQLESLAGELDKF--TTG 190 (714)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~------------~~~~~~l~~~l~~~--~~g 190 (714)
+ .+.. .. .....+ +.+.+.....+.+|++|+++.. ......+...+... ..+
T Consensus 274 -------l----~sk~-~g-ese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~ 340 (806)
T 3cf2_A 274 -------I----MSKL-AG-ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp -------H----HSSC-TT-HHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGC
T ss_pred -------h----hccc-ch-HHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCC
Confidence 1 1110 00 001111 2223334567899999998542 11123333322211 123
Q ss_pred cEEEEEcCChh-HHHh----cCCCeEEecCCCCHHHHHHHHHHhhhhcCC-CChhHHHHHHHHHHHhcCCChh
Q 042374 191 SRIIITTRDKQ-VLDK----CGVNYVYEVEGLEHNKAFELFYRKAFRQNN-YPPDFLGLSLEVVHYARNNPLA 257 (714)
Q Consensus 191 s~IliTtR~~~-v~~~----~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~Pla 257 (714)
..||.||...+ +-.. ......++++..+.++..+++..+...... ...+ ...+++++.|.--|
T Consensus 341 V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfsga 409 (806)
T 3cf2_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGA 409 (806)
T ss_dssp EEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCCHH
T ss_pred EEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCCHH
Confidence 44555655443 2222 134578999999999999999877532211 1112 45677778876543
No 234
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.53 E-value=0.00043 Score=68.37 Aligned_cols=29 Identities=34% Similarity=0.590 Sum_probs=24.7
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhc
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRH 107 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~ 107 (714)
..+.+.++|++|+|||+||+.+++.....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35678899999999999999999987443
No 235
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.43 E-value=0.00044 Score=78.54 Aligned_cols=161 Identities=12% Similarity=0.139 Sum_probs=87.0
Q ss_pred CCcccchhhHHHHHhhhccc-------CCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHH
Q 042374 57 DGFVGLNSRIEEVKSLLCLE-------SRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHV 129 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~~-------~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 129 (714)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+++..... .+.+. .........+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~---~~~i~-~s~~~~~~~~--- 530 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIE---LLRFD-MSEYMERHTV--- 530 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCE---EEEEE-GGGCSSSSCC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC---EEEEe-chhhcchhhH---
Confidence 45889998888887766421 1123578999999999999999999877322 22222 2222221111
Q ss_pred HHHHHHHHhCCCCCcccchhhHHHHHHHhc-CCcEEEEEeCCCCC-HHHHHHHhcCCCCC-----------CCCcEEEEE
Q 042374 130 RDEVISQVLGDKNLKIGTLVIHQNIRKRLR-QVKMLIVLDAVHDG-FTQLESLAGELDKF-----------TTGSRIIIT 196 (714)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~-~~~~~~l~~~l~~~-----------~~gs~IliT 196 (714)
..++|....-.+ .+....+.+.+. ...-+++||+++.. .+..+.|...+... .....||.|
T Consensus 531 -----~~l~g~~~g~~g-~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~t 604 (758)
T 1r6b_X 531 -----SRLIGAPPGYVG-FDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_dssp -----SSSCCCCSCSHH-HHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEE
T ss_pred -----hhhcCCCCCCcC-ccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEe
Confidence 111222211111 011122333332 34578999999765 23334443332211 023457777
Q ss_pred cCChh----------------------HHHh------cCCCeEEecCCCCHHHHHHHHHHhh
Q 042374 197 TRDKQ----------------------VLDK------CGVNYVYEVEGLEHNKAFELFYRKA 230 (714)
Q Consensus 197 tR~~~----------------------v~~~------~~~~~~~~l~~L~~~~~~~l~~~~~ 230 (714)
|.... +... .+....+.+++++.++..+++...+
T Consensus 605 sN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l 666 (758)
T 1r6b_X 605 TNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_dssp ECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred cCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHH
Confidence 75411 0001 1234568889999988888776654
No 236
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.39 E-value=0.0012 Score=64.22 Aligned_cols=151 Identities=17% Similarity=0.084 Sum_probs=79.7
Q ss_pred CCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccC
Q 042374 57 DGFVGLNSRIEEVKSLLCL-----------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMG 125 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 125 (714)
..+.|.++.+++|.+.+.. +-.-.+-++|+|++|+||||||+.++...... .+++... ..... .
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~---~i~i~g~-~l~~~-~ 84 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLN---FISVKGP-ELLNM-Y 84 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCE---EEEEETT-TTCSS-T
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCC---EEEEEcH-HHHhh-h
Confidence 3466777766666654321 00111228999999999999999999865432 3333311 11000 0
Q ss_pred hHHHHHHHHHHHhCCCCCcccchhhHHHHHHH-hcCCcEEEEEeCCCCC---H---------HHHHHHhcCCCCC--CCC
Q 042374 126 AIHVRDEVISQVLGDKNLKIGTLVIHQNIRKR-LRQVKMLIVLDAVHDG---F---------TQLESLAGELDKF--TTG 190 (714)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~---~---------~~~~~l~~~l~~~--~~g 190 (714)
..+. + .....+.+. -...+.++++|+++.. . .....+...+... ...
T Consensus 85 ~~~~-~-----------------~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~ 146 (274)
T 2x8a_A 85 VGES-E-----------------RAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQ 146 (274)
T ss_dssp THHH-H-----------------HHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTC
T ss_pred hhHH-H-----------------HHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCC
Confidence 0000 0 001122222 1345789999999642 0 1122222222211 123
Q ss_pred cEEEEEcCChhHHHh-----cCCCeEEecCCCCHHHHHHHHHHhh
Q 042374 191 SRIIITTRDKQVLDK-----CGVNYVYEVEGLEHNKAFELFYRKA 230 (714)
Q Consensus 191 s~IliTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~l~~~~~ 230 (714)
.-++.+|..+++... ......+.++..+.++..+++....
T Consensus 147 ~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 147 VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 445556665543221 2456788899999999999998765
No 237
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.37 E-value=0.00092 Score=67.52 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=39.3
Q ss_pred CCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhc
Q 042374 56 LDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRH 107 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~ 107 (714)
...++|++..++.+...+..+ .-+.++|++|+|||+||+.+++.....
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred ccceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 356999999999888777543 357899999999999999999876544
No 238
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.35 E-value=0.0013 Score=70.81 Aligned_cols=49 Identities=27% Similarity=0.409 Sum_probs=35.9
Q ss_pred cccchhhHHHHHhhhcc----cCCCeEEEEEEccCchhHHHHHHHHHHHHhhc
Q 042374 59 FVGLNSRIEEVKSLLCL----ESRDVRIVGIWGMGGIGKTTIASAVFHQISRH 107 (714)
Q Consensus 59 ~vGr~~~~~~l~~~l~~----~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~ 107 (714)
++|.++..+.+.+.+.. .......+.++|++|+||||||+.++......
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 67877777766554321 12245689999999999999999999877543
No 239
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.34 E-value=6.5e-05 Score=66.85 Aligned_cols=46 Identities=9% Similarity=0.136 Sum_probs=30.1
Q ss_pred eccccCCCCCCcEEecCCCCCCccccccccCCCCCCEEEecCCCCC
Q 042374 533 VPSSVGCLTNLKVLSLSQCPRLKRISTSILKLKSLQNLYLIQCFDL 578 (714)
Q Consensus 533 lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 578 (714)
+|.....-.+|+.|++++|.+...--..+.++++|++|++++|...
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~I 98 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYI 98 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTC
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCcc
Confidence 3443333346888888888765544455677888888888888643
No 240
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.30 E-value=0.00011 Score=70.80 Aligned_cols=30 Identities=30% Similarity=0.349 Sum_probs=19.0
Q ss_pred CCCEEECCCCCCc-ccc-------hhhccCCCCCeecc
Q 042374 646 SLEYLDLSGNDFE-SLP-------ASIKQLSRLRKLHL 675 (714)
Q Consensus 646 ~L~~L~L~~n~l~-~lp-------~~l~~l~~L~~L~l 675 (714)
+|++|+|++|.+. .+| ..+..+++|+.|+=
T Consensus 221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 5667777777665 333 23567788877763
No 241
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.29 E-value=0.0025 Score=61.53 Aligned_cols=151 Identities=18% Similarity=0.221 Sum_probs=77.8
Q ss_pred CCcccchhhHHHHHhhhcc--c-------C-CCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccCh
Q 042374 57 DGFVGLNSRIEEVKSLLCL--E-------S-RDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGA 126 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~--~-------~-~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 126 (714)
+.++|.+..+.++.++... . + .-.+-+.|+|++|+||||||+.++..... ..+.+...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~---~~i~~~~~--------- 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITASGS--------- 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEEHH---------
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---CEEEeeHH---------
Confidence 4467777665555443321 0 0 01123899999999999999999987642 22333210
Q ss_pred HHHHHHHHHHHhCCCCCcccchhhHHHHHHHh-cCCcEEEEEeCCCCC---------------HHHHHHHhcCCCCCC--
Q 042374 127 IHVRDEVISQVLGDKNLKIGTLVIHQNIRKRL-RQVKMLIVLDAVHDG---------------FTQLESLAGELDKFT-- 188 (714)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~---------------~~~~~~l~~~l~~~~-- 188 (714)
. +.....+ ........+.+.. ...+.++++|+++.. ......+...+....
T Consensus 84 -~----~~~~~~~------~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 152 (254)
T 1ixz_A 84 -D----FVEMFVG------VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 152 (254)
T ss_dssp -H----HHHSCTT------HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT
T ss_pred -H----HHHHHhh------HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC
Confidence 0 0000000 0001112222222 245689999998421 011223333332222
Q ss_pred CCcEEEEEcCChhHHHh-----cCCCeEEecCCCCHHHHHHHHHHhh
Q 042374 189 TGSRIIITTRDKQVLDK-----CGVNYVYEVEGLEHNKAFELFYRKA 230 (714)
Q Consensus 189 ~gs~IliTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~l~~~~~ 230 (714)
....++.||..++.... ......+.++..+.++..+++..++
T Consensus 153 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 153 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 22344456665543221 1345678999999999999887665
No 242
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.29 E-value=0.0017 Score=63.59 Aligned_cols=152 Identities=17% Similarity=0.218 Sum_probs=80.2
Q ss_pred CCCcccchhhHHHHHhhhcc--c-------C-CCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccC
Q 042374 56 LDGFVGLNSRIEEVKSLLCL--E-------S-RDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMG 125 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~--~-------~-~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 125 (714)
.+.++|.+..++++.++... . + .-.+-+.|+|++|+||||||+.++..... ..+.+...
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~~~-------- 107 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITASGS-------- 107 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEEHH--------
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---CEEEecHH--------
Confidence 45578888777666554421 0 0 01123899999999999999999987642 22333210
Q ss_pred hHHHHHHHHHHHhCCCCCcccchhhHHHHHHHh-cCCcEEEEEeCCCCC---------------HHHHHHHhcCCCCCCC
Q 042374 126 AIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRL-RQVKMLIVLDAVHDG---------------FTQLESLAGELDKFTT 189 (714)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~---------------~~~~~~l~~~l~~~~~ 189 (714)
.+ .....+ ........+.+.. ...+.++|+|+++.. ...+..+...+.....
T Consensus 108 --~~----~~~~~~------~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~ 175 (278)
T 1iy2_A 108 --DF----VEMFVG------VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 175 (278)
T ss_dssp --HH----HHSTTT------HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT
T ss_pred --HH----HHHHhh------HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC
Confidence 00 000000 0000111222222 245689999998421 0112333333332222
Q ss_pred --CcEEEEEcCChhHHH-----hcCCCeEEecCCCCHHHHHHHHHHhh
Q 042374 190 --GSRIIITTRDKQVLD-----KCGVNYVYEVEGLEHNKAFELFYRKA 230 (714)
Q Consensus 190 --gs~IliTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~l~~~~~ 230 (714)
...++.||..++... .......+.++..+.++..+++..++
T Consensus 176 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 176 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 233444555443321 11345678999999999999887765
No 243
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.18 E-value=0.0012 Score=68.09 Aligned_cols=49 Identities=14% Similarity=0.115 Sum_probs=36.1
Q ss_pred CcccchhhHHHHHhhhcc----------------------------cCCCeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 58 GFVGLNSRIEEVKSLLCL----------------------------ESRDVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 58 ~~vGr~~~~~~l~~~l~~----------------------------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
.++|.+..++.|...+.. .......+.++|++|+|||++|+.+++....
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~ 98 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 98 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 478888888877766520 0112346889999999999999999987643
No 244
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.17 E-value=0.003 Score=66.72 Aligned_cols=172 Identities=16% Similarity=0.150 Sum_probs=92.5
Q ss_pred CCCCcccchhhHHHHHhhhcc--cC--------CCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhccccc
Q 042374 55 DLDGFVGLNSRIEEVKSLLCL--ES--------RDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKM 124 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~--~~--------~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 124 (714)
....++|.++.++++.++... .. .-.+-|.|+|++|+|||+||+.++...... .+.+.. ..+...+
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~---~i~i~g-~~~~~~~ 104 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITASG-SDFVEMF 104 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC---EEEEEG-GGGTSSC
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEeh-hHHHHhh
Confidence 446689999887777665431 10 112348999999999999999999876422 233331 1111100
Q ss_pred ChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHhc----CCcEEEEEeCCCCC---------------HHHHHHHhcCCC
Q 042374 125 GAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRLR----QVKMLIVLDAVHDG---------------FTQLESLAGELD 185 (714)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~----~k~~LlVlDdv~~~---------------~~~~~~l~~~l~ 185 (714)
. .... ..+...++ ..+.++++|+++.. ...+..+...+.
T Consensus 105 ~--g~~~--------------------~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ld 162 (499)
T 2dhr_A 105 V--GVGA--------------------ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 162 (499)
T ss_dssp T--THHH--------------------HHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGG
T ss_pred h--hhHH--------------------HHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhc
Confidence 0 0000 12222222 23579999998431 012234443333
Q ss_pred CCC--CCcEEEEEcCChhHHHh-----cCCCeEEecCCCCHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHhcCCC
Q 042374 186 KFT--TGSRIIITTRDKQVLDK-----CGVNYVYEVEGLEHNKAFELFYRKAFRQNNYPPDFLGLSLEVVHYARNNP 255 (714)
Q Consensus 186 ~~~--~gs~IliTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 255 (714)
... .+..|+.||..++.... ......+.++..+.++..+++..++......+ + .....++..+.|+.
T Consensus 163 g~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~-d--v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 163 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE-D--VDLALLAKRTPGFV 236 (499)
T ss_dssp GCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCC-S--STTHHHHTTSCSCC
T ss_pred ccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCCh-H--HHHHHHHHhcCCCC
Confidence 222 23445556665544221 12345788999999999999977653221111 1 11344566666665
No 245
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.14 E-value=0.0015 Score=73.85 Aligned_cols=152 Identities=16% Similarity=0.203 Sum_probs=85.5
Q ss_pred CCCcccchhhHHHHHhhhcc-----------cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhccccc
Q 042374 56 LDGFVGLNSRIEEVKSLLCL-----------ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKM 124 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 124 (714)
...++|.+..+++|.+++.. .-.....|.|+|++|+||||||+.++......| +.+.. ..
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~~-~~----- 273 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLING-PE----- 273 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEEH-HH-----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEEc-hH-----
Confidence 35589999999888887743 123456789999999999999999998664433 22321 00
Q ss_pred ChHHHHHHHHHHHhCCCCCcccchhhH-HHHHHHhcCCcEEEEEeCCCCC------------H---HHHHHHhcCCCCCC
Q 042374 125 GAIHVRDEVISQVLGDKNLKIGTLVIH-QNIRKRLRQVKMLIVLDAVHDG------------F---TQLESLAGELDKFT 188 (714)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~------------~---~~~~~l~~~l~~~~ 188 (714)
+.+.. . ....... ..+.......+.++++|+++.. . ..+..+...... .
T Consensus 274 ------------l~~~~-~-g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~-~ 338 (806)
T 1ypw_A 274 ------------IMSKL-A-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-R 338 (806)
T ss_dssp ------------HSSSS-T-THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-T
T ss_pred ------------hhhhh-h-hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-c
Confidence 01100 0 0001111 2223333456789999998421 0 112222222221 1
Q ss_pred CCcEEEEEcCChh-HHHhc----CCCeEEecCCCCHHHHHHHHHHhhh
Q 042374 189 TGSRIIITTRDKQ-VLDKC----GVNYVYEVEGLEHNKAFELFYRKAF 231 (714)
Q Consensus 189 ~gs~IliTtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~l~~~~~~ 231 (714)
.+..++.||.... +.... .....+.+...+.++..+++...+.
T Consensus 339 ~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp SCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred ccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 2445555655432 21111 2335678888999999999887653
No 246
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.07 E-value=0.0015 Score=74.81 Aligned_cols=49 Identities=22% Similarity=0.307 Sum_probs=37.7
Q ss_pred CcccchhhHHHHHhhhccc-------CCCeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 58 GFVGLNSRIEEVKSLLCLE-------SRDVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 58 ~~vGr~~~~~~l~~~l~~~-------~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
.++|.+..++.+...+... ......+.|+|++|+|||++|+.+++....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4689998888887766431 112357899999999999999999987643
No 247
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.01 E-value=0.0012 Score=65.47 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=34.7
Q ss_pred hHHHHHhhhcccCC-CeEEEEEEccCchhHHHHHHHHHHHHh-hcccceEEee
Q 042374 65 RIEEVKSLLCLESR-DVRIVGIWGMGGIGKTTIASAVFHQIS-RHFQGKCFMA 115 (714)
Q Consensus 65 ~~~~l~~~l~~~~~-~~~vv~i~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~ 115 (714)
.++.+.+++..-.. ....+.|+|++|+|||+||+.+++... .+-..+.++.
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 34444455543211 246788999999999999999999876 5544455554
No 248
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.93 E-value=0.0031 Score=59.19 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=26.9
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
...++.|+|.+|+||||||..++. ..-..++|+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 456899999999999999999988 2224566665
No 249
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.80 E-value=0.024 Score=57.30 Aligned_cols=155 Identities=10% Similarity=-0.038 Sum_probs=94.7
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHh-hcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQIS-RHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKR 157 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (714)
-.++..++|+.|.||++.+..+...+. ..|+....+. .....++.++...+-. .-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~--------------------~p 72 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS----IDPNTDWNAIFSLCQA--------------------MS 72 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE----CCTTCCHHHHHHHHHH--------------------HH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE----ecCCCCHHHHHHHhcC--------------------cC
Confidence 356889999999999999999998654 3343211111 1112333333322211 11
Q ss_pred hcCCcEEEEEeCCCC-C-HHHHHHHhcCCCCCCCCcEEEEEcCC-------hhHHHh-cCCCeEEecCCCCHHHHHHHHH
Q 042374 158 LRQVKMLIVLDAVHD-G-FTQLESLAGELDKFTTGSRIIITTRD-------KQVLDK-CGVNYVYEVEGLEHNKAFELFY 227 (714)
Q Consensus 158 l~~k~~LlVlDdv~~-~-~~~~~~l~~~l~~~~~gs~IliTtR~-------~~v~~~-~~~~~~~~l~~L~~~~~~~l~~ 227 (714)
+-+++-++|+|+++. . ...++.+...+....+++.+|+++.. ..+... ......++..+++.++..+.+.
T Consensus 73 lf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 73 LFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp HCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHH
T ss_pred CccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHH
Confidence 345667889999865 2 25566676666544567777766543 233333 2345689999999999998887
Q ss_pred HhhhhcCC-CChhHHHHHHHHHHHhcCCChhhHH
Q 042374 228 RKAFRQNN-YPPDFLGLSLEVVHYARNNPLALEV 260 (714)
Q Consensus 228 ~~~~~~~~-~~~~~~~~~~~i~~~~~g~Plai~~ 260 (714)
+.+-...- ..+ +.+..+++.++|....+..
T Consensus 153 ~~~~~~g~~i~~---~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 153 ARAKQLNLELDD---AANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHTTCEECH---HHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHcCCCCCH---HHHHHHHHHhchHHHHHHH
Confidence 77643221 111 5567778888887766543
No 250
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.70 E-value=0.0021 Score=62.86 Aligned_cols=71 Identities=17% Similarity=0.223 Sum_probs=42.7
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhH-HHHHHHh
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIH-QNIRKRL 158 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l 158 (714)
.+++.|+|++|+|||+||..++.. . -..+.|+..- .....+ . .. ...+.. +.+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-~--G~~VlyIs~~--~eE~v~--------------~--~~-~~le~~l~~i~~~l 180 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-L--GGKDKYATVR--FGEPLS--------------G--YN-TDFNVFVDDIARAM 180 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-H--HTTSCCEEEE--BSCSST--------------T--CB-CCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-C--CCCEEEEEec--chhhhh--------------h--hh-cCHHHHHHHHHHHH
Confidence 457789999999999999999876 2 2234555420 000000 0 00 112222 4556666
Q ss_pred cCCcEEEEEeCCCCC
Q 042374 159 RQVKMLIVLDAVHDG 173 (714)
Q Consensus 159 ~~k~~LlVlDdv~~~ 173 (714)
...+ ++|+|++...
T Consensus 181 ~~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 181 LQHR-VIVIDSLKNV 194 (331)
T ss_dssp HHCS-EEEEECCTTT
T ss_pred hhCC-EEEEeccccc
Confidence 5556 9999999764
No 251
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.63 E-value=0.0051 Score=58.29 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=27.7
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
...+++|+|++|+|||||++.++......-..+.|+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3468999999999999999999976543333455554
No 252
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.62 E-value=0.0048 Score=58.73 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=22.8
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
++...+.++|++|.|||.+|..+++..
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 334579999999999999999999753
No 253
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.60 E-value=0.031 Score=50.14 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.4
Q ss_pred EEEEEccCchhHHHHHHHHHHHHh
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
.++|+|+.|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998653
No 254
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.56 E-value=0.0031 Score=56.88 Aligned_cols=135 Identities=17% Similarity=0.120 Sum_probs=66.2
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHH--hCCCCC--cc------cchhh
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQV--LGDKNL--KI------GTLVI 150 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~------~~~~~ 150 (714)
..|.|++-.|.||||.|-..+-+...+=..+.++..... .....-..+++.+.-.+ .+.... .. .....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg-~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKG-TWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCC-SSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC-CCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 456677777799999999999887666555555542211 01122222332220000 011000 00 00111
Q ss_pred H-HHHHHHhcC-CcEEEEEeCCCC----CHHHHHHHhcCCCCCCCCcEEEEEcCChhHHHhcCCCeEEecCC
Q 042374 151 H-QNIRKRLRQ-VKMLIVLDAVHD----GFTQLESLAGELDKFTTGSRIIITTRDKQVLDKCGVNYVYEVEG 216 (714)
Q Consensus 151 ~-~~l~~~l~~-k~~LlVlDdv~~----~~~~~~~l~~~l~~~~~gs~IliTtR~~~v~~~~~~~~~~~l~~ 216 (714)
. +.+++.+.+ +-=|||||++.. .+...+.+...+........||+|+|...-.-.--++.+-++..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~ 179 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRP 179 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeecc
Confidence 1 445555544 446999999822 11222333333333445678999999764222212344445443
No 255
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.55 E-value=0.00044 Score=62.17 Aligned_cols=22 Identities=32% Similarity=0.509 Sum_probs=19.4
Q ss_pred CeEEEEEEccCchhHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAV 100 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~ 100 (714)
+..+++|+|+.|.|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3568999999999999999964
No 256
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.48 E-value=0.0016 Score=72.42 Aligned_cols=151 Identities=16% Similarity=0.213 Sum_probs=79.5
Q ss_pred CCcccchhhHHHHHhhhccc-----------CCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccC
Q 042374 57 DGFVGLNSRIEEVKSLLCLE-----------SRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMG 125 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~~-----------~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 125 (714)
..+.|.++.+++|.+.+... ....+-|.++|++|.|||.+|+.++.+....| +. ++
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f-----~~----v~---- 543 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF-----IS----IK---- 543 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE-----EE----CC----
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce-----EE----ec----
Confidence 44678888888887766421 12345688999999999999999998764432 21 11
Q ss_pred hHHHHHHHHHHHhCCCCCcccchhhHHHHHH-HhcCCcEEEEEeCCCCC---H------------HHHHHHhcCCCCCCC
Q 042374 126 AIHVRDEVISQVLGDKNLKIGTLVIHQNIRK-RLRQVKMLIVLDAVHDG---F------------TQLESLAGELDKFTT 189 (714)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~---~------------~~~~~l~~~l~~~~~ 189 (714)
..+++....|.. ...++.+.+ .-+..+.+|++|+++.. + .....|+..+.....
T Consensus 544 ----~~~l~s~~vGes------e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 544 ----GPELLTMWFGES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp ----HHHHHTTTCSSC------HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS
T ss_pred ----cchhhccccchH------HHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence 112222222221 112222322 23467899999998542 0 113334433332222
Q ss_pred --CcEEEEEcC-Chh----HHHhcCCCeEEecCCCCHHHHHHHHHHhh
Q 042374 190 --GSRIIITTR-DKQ----VLDKCGVNYVYEVEGLEHNKAFELFYRKA 230 (714)
Q Consensus 190 --gs~IliTtR-~~~----v~~~~~~~~~~~l~~L~~~~~~~l~~~~~ 230 (714)
+.-||.||. ... +.+..+....+.++.-+.++..++|+.+.
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 323333443 222 22222456778888888888888887665
No 257
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.47 E-value=0.0059 Score=61.31 Aligned_cols=50 Identities=22% Similarity=0.156 Sum_probs=36.2
Q ss_pred HHHHHhhhc-ccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 66 IEEVKSLLC-LESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 66 ~~~l~~~l~-~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
...|..+|- .+=....++.|+|++|+||||||..++......-..++|+.
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 455555553 22234679999999999999999999987655434567775
No 258
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.39 E-value=0.0012 Score=59.80 Aligned_cols=37 Identities=8% Similarity=0.178 Sum_probs=21.3
Q ss_pred CCCCCCEEECCCC---CCc-----ccchhhccCCCCCeeccccCc
Q 042374 643 CLSSLEYLDLSGN---DFE-----SLPASIKQLSRLRKLHLCYCD 679 (714)
Q Consensus 643 ~l~~L~~L~L~~n---~l~-----~lp~~l~~l~~L~~L~l~~~~ 679 (714)
..+.|++|+|++| .+. .+...+..-+.|+.|+++.|.
T Consensus 124 ~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 124 VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 3445666666654 233 244455666777777776554
No 259
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.27 E-value=0.013 Score=55.54 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=22.0
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
+..+++|+|+.|.|||||++.++.-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999863
No 260
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.20 E-value=0.003 Score=64.59 Aligned_cols=47 Identities=15% Similarity=0.143 Sum_probs=36.9
Q ss_pred cccchhhHHHHHhhhc-------------ccCCCeEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 59 FVGLNSRIEEVKSLLC-------------LESRDVRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 59 ~vGr~~~~~~l~~~l~-------------~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
++|.+..++.+...+. ......+.|.++|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 7999988888877772 1112345788999999999999999998764
No 261
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.15 E-value=0.0042 Score=57.74 Aligned_cols=41 Identities=22% Similarity=0.265 Sum_probs=30.6
Q ss_pred hHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 65 RIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 65 ~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
-+++|.+.+.....+..+|+|+|+.|.|||||++.++....
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34455555443334578999999999999999999998654
No 262
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.08 E-value=0.027 Score=56.68 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=29.4
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHHhh------cccceEEee
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQISR------HFQGKCFMA 115 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~ 115 (714)
....++.|+|.+|+||||||..++..... .-..++|+.
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 35679999999999999999999986432 224567776
No 263
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.05 E-value=0.013 Score=55.79 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=28.3
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhh------cccceEEee
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISR------HFQGKCFMA 115 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~ 115 (714)
...++.|+|++|+|||||++.++..+.. .-..++|+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 3568999999999999999999985322 124567775
No 264
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.00 E-value=0.047 Score=53.63 Aligned_cols=50 Identities=16% Similarity=0.198 Sum_probs=34.4
Q ss_pred hHHHHHhhhccc------CCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEe
Q 042374 65 RIEEVKSLLCLE------SRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFM 114 (714)
Q Consensus 65 ~~~~l~~~l~~~------~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 114 (714)
-.++|.+++... .....+++|+|++|+||||++..++......-..+.++
T Consensus 83 ~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 83 LKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp HHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 345555555432 13467999999999999999999998765543334444
No 265
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.99 E-value=0.027 Score=52.12 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=24.1
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
.+.++|.|.|++|+||+|.|+.++++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999998764
No 266
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.98 E-value=0.014 Score=54.40 Aligned_cols=111 Identities=18% Similarity=-0.003 Sum_probs=58.7
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCc--ccchhhH-HHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLK--IGTLVIH-QNIR 155 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~l~ 155 (714)
...++.++|..|+||||++..++.+...+-..+..+.... ... .. .++... +|..... ....... +.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~--d~r-~~----~~i~sr-lG~~~~~~~~~~~~~i~~~i~ 82 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI--DTR-SI----RNIQSR-TGTSLPSVEVESAPEILNYIM 82 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC--CGG-GC----SSCCCC-CCCSSCCEEESSTHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc--Cch-HH----HHHHHh-cCCCccccccCCHHHHHHHHH
Confidence 3568899999999999999999988766544444443111 000 00 111222 2221111 1111112 3333
Q ss_pred HHhcCC-cEEEEEeCCCCC-HHHHHHHhcCCCCCCCCcEEEEEcCCh
Q 042374 156 KRLRQV-KMLIVLDAVHDG-FTQLESLAGELDKFTTGSRIIITTRDK 200 (714)
Q Consensus 156 ~~l~~k-~~LlVlDdv~~~-~~~~~~l~~~l~~~~~gs~IliTtR~~ 200 (714)
+.+.+. .-+||+|++... .+.++.+.. +. ..|..||+|-+..
T Consensus 83 ~~~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~--~~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQFFDDRICEVANI-LA--ENGFVVIISGLDK 126 (223)
T ss_dssp STTSCTTCCEEEECSGGGSCTHHHHHHHH-HH--HTTCEEEEECCSB
T ss_pred HHhhCCCCCEEEEecCccCcHHHHHHHHH-HH--hCCCeEEEEeccc
Confidence 333333 459999999643 134343322 21 1267899998854
No 267
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.97 E-value=0.0091 Score=55.05 Aligned_cols=44 Identities=25% Similarity=0.343 Sum_probs=33.0
Q ss_pred chhhHHHHHhhhccc-CCCeEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 62 LNSRIEEVKSLLCLE-SRDVRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 62 r~~~~~~l~~~l~~~-~~~~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
|++.++.+.+.+... .....+|+|.|..|+||||+++.+.....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445566666655432 24567999999999999999999998654
No 268
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.93 E-value=0.0097 Score=50.24 Aligned_cols=36 Identities=31% Similarity=0.387 Sum_probs=22.3
Q ss_pred CCCCEEECCCCCCcccch-hhccCCCCCeeccccCcc
Q 042374 645 SSLEYLDLSGNDFESLPA-SIKQLSRLRKLHLCYCDK 680 (714)
Q Consensus 645 ~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~~~~ 680 (714)
++|+.|+|++|+|+.+|. .+..+++|+.|+|.+|++
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 356666666666666654 345566666666666654
No 269
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.92 E-value=0.019 Score=55.88 Aligned_cols=34 Identities=12% Similarity=0.009 Sum_probs=27.7
Q ss_pred EEEEEccCchhHHHHHHHHHHHHhhc--ccceEEee
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQISRH--FQGKCFMA 115 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~ 115 (714)
++.|.|++|+||||||..++...... -..++|+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 78999999999999999998876554 24567776
No 270
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.91 E-value=0.034 Score=54.52 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=27.8
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhh-cccceEEee
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISR-HFQGKCFMA 115 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~ 115 (714)
+.++++++|.+|+||||++..++..... +-..+.++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4579999999999999999999987653 222344443
No 271
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.90 E-value=0.061 Score=50.49 Aligned_cols=61 Identities=13% Similarity=0.136 Sum_probs=35.4
Q ss_pred HHHHHHhcCCcEEEEEeCCCCC--HHHHHHHhcC-CCCCCCCcEEEEEcCChhHHHhcCCCeEEec
Q 042374 152 QNIRKRLRQVKMLIVLDAVHDG--FTQLESLAGE-LDKFTTGSRIIITTRDKQVLDKCGVNYVYEV 214 (714)
Q Consensus 152 ~~l~~~l~~k~~LlVlDdv~~~--~~~~~~l~~~-l~~~~~gs~IliTtR~~~v~~~~~~~~~~~l 214 (714)
-.+...+..++-++++|+-... ......+... +.....|..||++|.+...+.. +++++.+
T Consensus 139 v~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~--~d~v~~l 202 (229)
T 2pze_A 139 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK--ADKILIL 202 (229)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH--CSEEEEE
T ss_pred HHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHh--CCEEEEE
Confidence 3455666777889999997554 1222333332 2222346678888888776553 3444444
No 272
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.88 E-value=0.016 Score=58.44 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=24.0
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
....++.|+|++|+|||||++.++...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999865
No 273
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.88 E-value=0.0011 Score=74.96 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=39.7
Q ss_pred CCCcccchhhHHHHHhhhccc-----------CCCeEEEEEEccCchhHHHHHHHHHHHHhhc
Q 042374 56 LDGFVGLNSRIEEVKSLLCLE-----------SRDVRIVGIWGMGGIGKTTIASAVFHQISRH 107 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~~-----------~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~ 107 (714)
...++|.+..++.+.+.+... -...+.+.++|++|+|||+||+.++......
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 345788888888888876421 0234568899999999999999999977544
No 274
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.85 E-value=0.051 Score=53.95 Aligned_cols=72 Identities=18% Similarity=0.131 Sum_probs=46.3
Q ss_pred cchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhC
Q 042374 61 GLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLG 139 (714)
Q Consensus 61 Gr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (714)
|...-+..|.+++ .+=....++.|.|.+|+||||+|..++..+..+-..++|+. -.....++...+.....+
T Consensus 50 ~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s------lE~s~~~l~~R~~~~~~~ 121 (315)
T 3bh0_A 50 GVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS------LEMGKKENIKRLIVTAGS 121 (315)
T ss_dssp SBCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE------SSSCHHHHHHHHHHHHTT
T ss_pred CccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE------CCCCHHHHHHHHHHHHcC
Confidence 3333344454444 22234568999999999999999999976544335566664 345666777777665433
No 275
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.85 E-value=0.0044 Score=56.18 Aligned_cols=26 Identities=23% Similarity=0.046 Sum_probs=21.7
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
+++.|+|+.|+||||++..++.+...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47889999999999999888776543
No 276
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.81 E-value=0.069 Score=52.09 Aligned_cols=30 Identities=13% Similarity=0.235 Sum_probs=25.5
Q ss_pred CCCeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 77 SRDVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 77 ~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
.....+|+|+|..|+||||||+.+......
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345789999999999999999999886543
No 277
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.79 E-value=0.011 Score=59.47 Aligned_cols=112 Identities=16% Similarity=0.181 Sum_probs=63.3
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcccceEE-eeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHh
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCF-MANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRL 158 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 158 (714)
..+++|+|+.|.||||+++.+...+.......++ +.+..+....... ................+.+...|
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~---------~~v~q~~~~~~~~~~~~~La~aL 193 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK---------CLVNQREVHRDTLGFSEALRSAL 193 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS---------SEEEEEEBTTTBSCHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc---------cceeeeeeccccCCHHHHHHHHh
Confidence 4489999999999999999998866543223332 2211100000000 00000000001111126788888
Q ss_pred cCCcEEEEEeCCCCCHHHHHHHhcCCCCCCCCcEEEEEcCChhHHH
Q 042374 159 RQVKMLIVLDAVHDGFTQLESLAGELDKFTTGSRIIITTRDKQVLD 204 (714)
Q Consensus 159 ~~k~~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~v~~ 204 (714)
...+=++++|++.+. +.++.+... ...|..|++|+.....+.
T Consensus 194 ~~~PdvillDEp~d~-e~~~~~~~~---~~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 194 REDPDIILVGEMRDL-ETIRLALTA---AETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp TSCCSEEEESCCCSH-HHHHHHHHH---HHTTCEEEEEESCSSHHH
T ss_pred hhCcCEEecCCCCCH-HHHHHHHHH---HhcCCEEEEEEccChHHH
Confidence 888999999999875 555544433 134667888888776543
No 278
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.76 E-value=0.0041 Score=56.12 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=22.4
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHh
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
++|.|.|++|+||||+|+.++.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998754
No 279
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.73 E-value=0.033 Score=51.21 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=20.5
Q ss_pred EEEEEccCchhHHHHHHHHHHHH
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
+|.|.|++|+||+|.|+.++++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998754
No 280
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.71 E-value=0.05 Score=54.58 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.5
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+..+++|+|+.|.|||||++.++.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHhc
Confidence 456899999999999999999985
No 281
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.70 E-value=0.026 Score=54.39 Aligned_cols=26 Identities=23% Similarity=0.494 Sum_probs=23.2
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
...|.|.|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 282
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.70 E-value=0.074 Score=52.81 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=25.5
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHHhhc
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQISRH 107 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~ 107 (714)
.+..+++|+|+.|+||||+++.++...+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 346899999999999999999999865543
No 283
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.65 E-value=0.0055 Score=54.91 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=22.2
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHh
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
.+|+|.|++|+||||+|+.++.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988754
No 284
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.65 E-value=0.0057 Score=56.37 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.6
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
+.++|+|+|++|+||||+|+.++....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999998763
No 285
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.56 E-value=0.012 Score=54.08 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=24.7
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
....+|+|+|++|.||||+++.++....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3467999999999999999999998765
No 286
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.54 E-value=0.019 Score=57.93 Aligned_cols=50 Identities=26% Similarity=0.200 Sum_probs=35.7
Q ss_pred HHHHHhhhc-ccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 66 IEEVKSLLC-LESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 66 ~~~l~~~l~-~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
...|..+|. .+=...+++.|.|.+|+||||||..++......-..++|+.
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 445555553 22124568999999999999999999987655445677876
No 287
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.51 E-value=0.02 Score=57.71 Aligned_cols=50 Identities=20% Similarity=0.137 Sum_probs=35.7
Q ss_pred HHHHHhhhc-ccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 66 IEEVKSLLC-LESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 66 ~~~l~~~l~-~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
...|..+|. .+=...+++.|+|.+|+||||||..++......-..++|+.
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 445555553 22234568999999999999999999986655445677776
No 288
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.50 E-value=0.024 Score=56.71 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=28.6
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhc------ccceEEee
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRH------FQGKCFMA 115 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~ 115 (714)
...++.|+|.+|+||||||..++...... -..++|+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 34689999999999999999999865322 24567776
No 289
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.46 E-value=0.0045 Score=55.88 Aligned_cols=29 Identities=31% Similarity=0.497 Sum_probs=23.6
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhhccc
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISRHFQ 109 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~~f~ 109 (714)
+.|+|+|++|+|||||++++..+..+.|.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeE
Confidence 34789999999999999999877655443
No 290
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.41 E-value=0.07 Score=51.17 Aligned_cols=24 Identities=38% Similarity=0.314 Sum_probs=21.4
Q ss_pred eEEEEEEccCchhHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
..+++|+|+.|.|||||++.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999853
No 291
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.40 E-value=0.067 Score=55.10 Aligned_cols=36 Identities=22% Similarity=0.120 Sum_probs=28.1
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEe
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFM 114 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 114 (714)
...+|.++|.+|+||||++..++...+.+-..+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv 131 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLV 131 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 368999999999999999999998766543334333
No 292
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.39 E-value=0.0074 Score=54.78 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.3
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
.+.|.|+|++|+||||+|+.++.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999865
No 293
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.38 E-value=0.0074 Score=63.77 Aligned_cols=44 Identities=20% Similarity=0.127 Sum_probs=36.9
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 57 DGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
..++|++..++.+...+..+ .-|.|+|++|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHH
Confidence 45999999998888777543 367899999999999999998755
No 294
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.37 E-value=0.013 Score=53.43 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=23.2
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
+.|.|.|++|+||||+|+.++.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999987754
No 295
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.35 E-value=0.093 Score=51.98 Aligned_cols=36 Identities=19% Similarity=0.155 Sum_probs=28.2
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEe
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFM 114 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 114 (714)
+.++|+|+|.+|+||||++..++......-..+.++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 467999999999999999999998766543334444
No 296
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.34 E-value=0.012 Score=58.36 Aligned_cols=48 Identities=27% Similarity=0.290 Sum_probs=33.0
Q ss_pred cchhhHHHHHhhhcc--cCCCeEEEEEEccCchhHHHHHHHHHHHHhhcc
Q 042374 61 GLNSRIEEVKSLLCL--ESRDVRIVGIWGMGGIGKTTIASAVFHQISRHF 108 (714)
Q Consensus 61 Gr~~~~~~l~~~l~~--~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f 108 (714)
+.+.-.+.+.+.+.. ..++...|.|+|++|+||||+++.++....-.|
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 334445555554432 234456789999999999999999998765444
No 297
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.33 E-value=0.078 Score=54.65 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=28.0
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEe
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFM 114 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 114 (714)
...+|.++|.+|+||||++..++..++.+-..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv 134 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVV 134 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 368999999999999999999998766543333333
No 298
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.30 E-value=0.014 Score=51.48 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=24.9
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhc
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRH 107 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~ 107 (714)
..++++|+|..|+|||||+..+...++.+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35689999999999999999999877654
No 299
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.29 E-value=0.0084 Score=54.75 Aligned_cols=25 Identities=36% Similarity=0.380 Sum_probs=22.1
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
+..+++|+|++|+||||+++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3568999999999999999999864
No 300
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.27 E-value=0.029 Score=56.72 Aligned_cols=51 Identities=25% Similarity=0.170 Sum_probs=36.1
Q ss_pred hHHHHHhhhc-ccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 65 RIEEVKSLLC-LESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 65 ~~~~l~~~l~-~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
-...|..+|. .+=....++.|.|.+|+||||||..++......-..++|+.
T Consensus 58 G~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 58 GSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 3455555553 22123458889999999999999999987655445678876
No 301
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.26 E-value=0.026 Score=56.45 Aligned_cols=28 Identities=18% Similarity=0.032 Sum_probs=24.0
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
..+.++|+|.+|+|||||++.+++.+..
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 3568899999999999999999986644
No 302
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.23 E-value=0.0094 Score=53.84 Aligned_cols=26 Identities=15% Similarity=0.399 Sum_probs=22.9
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
.++++|+|+.|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45899999999999999999987654
No 303
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.19 E-value=0.02 Score=51.98 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=24.6
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
...+|.|.|++|+||||+++.++.....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4578999999999999999999987654
No 304
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.16 E-value=0.014 Score=60.16 Aligned_cols=52 Identities=21% Similarity=0.232 Sum_probs=38.0
Q ss_pred CCcccchhhHHHHHhhhccc------------CCCeEEEEEEccCchhHHHHHHHHHHHHhhcc
Q 042374 57 DGFVGLNSRIEEVKSLLCLE------------SRDVRIVGIWGMGGIGKTTIASAVFHQISRHF 108 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~~------------~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f 108 (714)
..++|.++.++.+..++... ....+-|.++|++|+|||++|+.++......|
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 45788888888776655210 11245688999999999999999998765433
No 305
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.15 E-value=0.011 Score=53.38 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=20.5
Q ss_pred EEEEEEccCchhHHHHHHHHHH
Q 042374 81 RIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
.+|.|.|++|+||||+|+.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 306
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.13 E-value=0.033 Score=57.59 Aligned_cols=29 Identities=28% Similarity=0.646 Sum_probs=24.0
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhhccc
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISRHFQ 109 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~~f~ 109 (714)
+.++|+|.+|+|||||++.++.....++.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~ 180 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHG 180 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccC
Confidence 46889999999999999999987655443
No 307
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.11 E-value=0.011 Score=52.65 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=22.7
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
.++|+|.|+.|+||||+|+.++.+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998654
No 308
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.06 E-value=0.029 Score=50.83 Aligned_cols=107 Identities=15% Similarity=0.058 Sum_probs=74.0
Q ss_pred hhhccccccccccCCc-cccccCccccCCCCCcccCCCccCCCCCCCceeccCCCcCc---------CCCCCCCCEEECC
Q 042374 584 ILEKMEYLNYNALGRT-KIRELPSTFEKGEGTESQLPSSVADTNDLEGLSLYLRNYAL---------NGCLSSLEYLDLS 653 (714)
Q Consensus 584 ~l~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~---------~~~l~~L~~L~L~ 653 (714)
.+.+-+.|++|+|+++ .|..-.. ..+-..+..-+.|+.|+|++|.+.+ +...+.|++|+|+
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga---------~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~ 106 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERI---------RSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVE 106 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHH---------HHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred HHhcCCCccEEECCCCCCCCHHHH---------HHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecC
Confidence 3455678999999885 7643211 1122336667899999999999887 3356789999999
Q ss_pred CCCCc-----ccchhhccCCCCCeeccccCcc--cc-----ccCC---CcCcccEeecccC
Q 042374 654 GNDFE-----SLPASIKQLSRLRKLHLCYCDK--LQ-----SIPE---LPLSLKWLDASNC 699 (714)
Q Consensus 654 ~n~l~-----~lp~~l~~l~~L~~L~l~~~~~--~~-----~lp~---~~~~L~~L~l~~c 699 (714)
+|.|+ .+...+..-+.|++|+|++|.. .+ .+.. .=++|+.|+++.+
T Consensus 107 ~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 107 SNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp SSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 99987 4566677778899999987632 22 1221 1257888888765
No 309
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.04 E-value=0.13 Score=50.33 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=28.2
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
..+++++|.+|+||||++..++......-..+.++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 679999999999999999999987655433445443
No 310
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.04 E-value=0.11 Score=50.61 Aligned_cols=25 Identities=20% Similarity=0.411 Sum_probs=22.0
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
+..+++|+|+.|.|||||++.++.-
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4568999999999999999999863
No 311
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.03 E-value=0.0097 Score=54.10 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=23.8
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhhcc
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISRHF 108 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~~f 108 (714)
++++|+|+.|+|||||++.+.......|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 4789999999999999999998765444
No 312
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.02 E-value=0.014 Score=53.28 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=22.6
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
..+|.|.|++|+||||+|+.++...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998765
No 313
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.00 E-value=0.019 Score=52.05 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=29.7
Q ss_pred hHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 65 RIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 65 ~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
-+..+..++.. -++...+.|+|++|+||||+|..+++.+..
T Consensus 44 f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 44 FLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34555555532 223346899999999999999999987754
No 314
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.00 E-value=0.021 Score=56.46 Aligned_cols=38 Identities=24% Similarity=0.366 Sum_probs=29.2
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
+..++|+|.|.|||||||.+..++.-+...-..+.-+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35789999999999999999999886655444455554
No 315
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.99 E-value=0.01 Score=53.23 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=18.7
Q ss_pred EEEEEEccCchhHHHHHHHH
Q 042374 81 RIVGIWGMGGIGKTTIASAV 100 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~ 100 (714)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 316
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.99 E-value=0.055 Score=53.99 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=22.9
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
...++.|+|.+|+|||+||..++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998763
No 317
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.92 E-value=0.013 Score=53.91 Aligned_cols=26 Identities=42% Similarity=0.533 Sum_probs=23.2
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
...+|+|+|+.|+||||+++.++...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999998765
No 318
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.92 E-value=0.013 Score=53.35 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=23.6
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
..++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999997654
No 319
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.92 E-value=0.0097 Score=53.29 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.0
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHh
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
.+|+|+|+.|+||||+++.++....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999987653
No 320
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.92 E-value=0.0097 Score=60.43 Aligned_cols=49 Identities=18% Similarity=0.172 Sum_probs=34.8
Q ss_pred CCCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 55 DLDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 55 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
..+.++|.+..++.+........ ..-+.|+|++|+|||++|+.+++...
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHhCc
Confidence 34568999886665544332221 22388999999999999999998654
No 321
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.88 E-value=0.046 Score=55.62 Aligned_cols=110 Identities=17% Similarity=0.220 Sum_probs=59.4
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceE-EeeechhcccccChHHHHHHHHHH-HhCCCCCcccchhhHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKC-FMANVREESNKMGAIHVRDEVISQ-VLGDKNLKIGTLVIHQNIRK 156 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~ 156 (714)
...+++|+|+.|.||||+++.+...+.......+ ++..- . ....... ..++.| ..+. ........+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~--~--e~~~~~~-~~~v~Q~~~g~-----~~~~~~~~l~~ 204 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP--I--EYVFKHK-KSIVNQREVGE-----DTKSFADALRA 204 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS--C--CSCCCCS-SSEEEEEEBTT-----TBSCSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc--H--hhhhccC-ceEEEeeecCC-----CHHHHHHHHHH
Confidence 4568999999999999999999986554323344 33210 0 0000000 000000 0000 01111256777
Q ss_pred HhcCCcEEEEEeCCCCCHHHHHHHhcCCCCCCCCcEEEEEcCChhH
Q 042374 157 RLRQVKMLIVLDAVHDGFTQLESLAGELDKFTTGSRIIITTRDKQV 202 (714)
Q Consensus 157 ~l~~k~~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~v 202 (714)
.+...+=++++|++.+. +......... ..|..|+.|+....+
T Consensus 205 ~L~~~pd~illdE~~d~-e~~~~~l~~~---~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 205 ALREDPDVIFVGEMRDL-ETVETALRAA---ETGHLVFGTLHTNTA 246 (372)
T ss_dssp HTTSCCSEEEESCCCSH-HHHHHHHHHH---TTTCEEEECCCCCSH
T ss_pred HhhhCcCEEEECCCCCH-HHHHHHHHHH---hcCCEEEEEECcchH
Confidence 77777789999999865 4333333221 345567777776543
No 322
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.86 E-value=0.011 Score=53.39 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.2
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
.+.|.|.|++|+||||+|+.++...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999998765
No 323
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.86 E-value=0.013 Score=54.28 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=23.4
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
...+|+|+|+.|+|||||++.++....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356899999999999999999987654
No 324
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.85 E-value=0.02 Score=54.50 Aligned_cols=27 Identities=19% Similarity=0.059 Sum_probs=23.5
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
.....|+|.|++|+||||+|+.++++.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999998764
No 325
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.82 E-value=0.022 Score=53.00 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=25.0
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcc
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHF 108 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f 108 (714)
...|+|.|+.|+||||+|+.++......+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 45899999999999999999998776543
No 326
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.80 E-value=0.016 Score=51.94 Aligned_cols=26 Identities=42% Similarity=0.645 Sum_probs=23.0
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
...+|+|+|+.|+||||+++.++...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999998764
No 327
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.79 E-value=0.016 Score=55.64 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=22.2
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHh
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
++|+|.|++|+||||||+.++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998653
No 328
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.78 E-value=0.014 Score=53.90 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.2
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
..+++|+|+.|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4589999999999999999998753
No 329
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.76 E-value=0.026 Score=52.44 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=24.2
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhc
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRH 107 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~ 107 (714)
...|+|.|++|+||||+|+.++......
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3579999999999999999999876543
No 330
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.72 E-value=0.13 Score=53.83 Aligned_cols=56 Identities=14% Similarity=0.032 Sum_probs=39.8
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhc-ccceEEeeechhcccccChHHHHHHHHHHHhCC
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRH-FQGKCFMANVREESNKMGAIHVRDEVISQVLGD 140 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (714)
...++.|.|.+|+||||+|..++..+... -..++|+. -.....++...++....+-
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s------lE~~~~~l~~R~~~~~~~i 255 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS------LEMPAAQLTLRMMCSEARI 255 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE------SSSCHHHHHHHHHHHHTTC
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE------CCCCHHHHHHHHHHHHcCC
Confidence 34588999999999999999999876543 23566654 3455667777777665443
No 331
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.71 E-value=0.015 Score=53.62 Aligned_cols=24 Identities=29% Similarity=0.601 Sum_probs=21.7
Q ss_pred EEEEEccCchhHHHHHHHHHHHHh
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
.|+|.|+.|+||||+++.++....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998764
No 332
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.71 E-value=0.017 Score=52.58 Aligned_cols=26 Identities=23% Similarity=0.512 Sum_probs=23.1
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
..|.|.|++|+||||+|+.++.....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999987653
No 333
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.71 E-value=0.014 Score=53.86 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=22.5
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
..+|+|.|+.|+||||+|+.++...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998875
No 334
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.68 E-value=0.013 Score=54.14 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=23.4
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
..++|+|+|++|+||||+++.+.....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999988653
No 335
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.66 E-value=0.12 Score=50.57 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=27.7
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEe
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFM 114 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 114 (714)
..++++++|.+|+||||++..++......-..+.++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 467999999999999999999998765442334443
No 336
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.64 E-value=0.016 Score=51.93 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.5
Q ss_pred EEEEEccCchhHHHHHHHHHHHHh
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
.|.|.|++|+||||+|+.++.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998653
No 337
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.63 E-value=0.25 Score=52.04 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=27.3
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
+.++|+|+|.+|+||||++..++.....+=..+..+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 4679999999999999999999987665423344443
No 338
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.62 E-value=0.021 Score=51.71 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=22.3
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
...|+|.|++|+||||+|+.++...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998765
No 339
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.62 E-value=0.016 Score=53.04 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.5
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
..+|+|.|++|+||||+|+.++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 340
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.61 E-value=0.21 Score=51.75 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=28.3
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhc-ccceEEe
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRH-FQGKCFM 114 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~ 114 (714)
..++|.++|.+|+||||++..++.....+ -..+..+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllv 135 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 135 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 46899999999999999999999877654 3334444
No 341
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.60 E-value=0.018 Score=52.34 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.3
Q ss_pred EEEEEEccCchhHHHHHHHHHH
Q 042374 81 RIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
.+++|+|+.|.||||+++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 342
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.57 E-value=0.018 Score=53.43 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=23.7
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
+..+|+|+|+.|.|||||++.++....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999988654
No 343
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.57 E-value=0.02 Score=52.28 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.2
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
..+|+|.|++|+||||+|+.++...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998764
No 344
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.57 E-value=0.019 Score=52.07 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=22.2
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
....|+|.|+.|+||||+++.++..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999876
No 345
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.57 E-value=0.012 Score=53.13 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=18.6
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
..+|.|.|++|+||||+|+.++....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999987653
No 346
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.53 E-value=0.051 Score=55.00 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=30.7
Q ss_pred HHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhc
Q 042374 66 IEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRH 107 (714)
Q Consensus 66 ~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~ 107 (714)
..++.+.+........+|+|+|.+|+|||||+..++......
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 334444444344567899999999999999999998865443
No 347
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.53 E-value=0.023 Score=52.40 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=23.4
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
....+|+|.|++|+||||+|+.++++.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999998764
No 348
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.52 E-value=0.018 Score=53.27 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.2
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998754
No 349
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.50 E-value=0.17 Score=52.69 Aligned_cols=55 Identities=18% Similarity=0.069 Sum_probs=38.1
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhC
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLG 139 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (714)
....+.|.|.+|+||||+|..++..+..+-..++|+. -.....++...++....+
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS------lEms~~ql~~R~~~~~~~ 250 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS------LEMGKKENIKRLIVTAGS 250 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC------SSSCTTHHHHHHHHHHSC
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE------CCCCHHHHHHHHHHHHcC
Confidence 3458999999999999999999987654433455553 344555666666655433
No 350
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.47 E-value=0.031 Score=55.01 Aligned_cols=35 Identities=26% Similarity=0.331 Sum_probs=27.0
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEe
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFM 114 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 114 (714)
+..+++|+|++|+||||+++.++...+.. ...+++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l 135 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMF 135 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEE
Confidence 45699999999999999999999865543 333444
No 351
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.46 E-value=0.18 Score=54.83 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.5
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+..+++|+|+.|.|||||++.++.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999985
No 352
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.46 E-value=0.015 Score=53.47 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=22.1
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
.++++|+|+.|+|||||++.+.....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35789999999999999999987553
No 353
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.45 E-value=0.036 Score=52.20 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=28.4
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHHhh------cccceEEee
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQISR------HFQGKCFMA 115 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~ 115 (714)
....+++|+|++|+|||||++.++..... .-..++|+.
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~ 66 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 66 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEE
Confidence 34579999999999999999999874332 123466665
No 354
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.45 E-value=0.023 Score=52.59 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=22.6
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
....+|+|+|++|.||||+|+.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34678999999999999999999764
No 355
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.43 E-value=0.028 Score=55.48 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=32.6
Q ss_pred cccchhhHHHHHhhhccc--CCCeEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 59 FVGLNSRIEEVKSLLCLE--SRDVRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 59 ~vGr~~~~~~l~~~l~~~--~~~~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
++|-...+..+...+... .....+|+|.|..|+||||+++.+.....
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345455555544444332 34567999999999999999999987654
No 356
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.41 E-value=0.055 Score=49.44 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=22.3
Q ss_pred EEEEEccCchhHHHHHHHHHHHHhh
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
.|+|.|+.|+||||+++.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987654
No 357
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.40 E-value=0.07 Score=54.57 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=27.0
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhh------cccceEEee
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISR------HFQGKCFMA 115 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~ 115 (714)
...++.|+|++|+|||||+..++-.... .-..++|+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid 219 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 219 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEe
Confidence 3568999999999999999988743221 223477775
No 358
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.39 E-value=0.016 Score=52.48 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.5
Q ss_pred EEEEEccCchhHHHHHHHHHHHHh
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
+|.|.|++|+||||+|+.++.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999988653
No 359
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.36 E-value=0.061 Score=48.98 Aligned_cols=25 Identities=28% Similarity=0.562 Sum_probs=22.3
Q ss_pred EEEEEccCchhHHHHHHHHHHHHhh
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
+|+|.|+.|+||||+|+.+++....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987643
No 360
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.34 E-value=0.026 Score=49.40 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=23.8
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
.+..+++|+|+.|.|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345689999999999999999999865
No 361
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.31 E-value=0.018 Score=51.46 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.0
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHh
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
++|.|.|++|+||||+|+.++....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998653
No 362
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.31 E-value=0.024 Score=52.22 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=22.9
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
....+|+|.|+.|+||||+|+.++..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999999874
No 363
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.30 E-value=0.022 Score=54.37 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=22.6
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
..+|+|+|+.|+|||||++.++++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999765
No 364
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.29 E-value=0.025 Score=50.23 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=22.8
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
++++|+|..|+|||||++.+......
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999999986544
No 365
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.28 E-value=0.039 Score=54.21 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=24.6
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
+..+++|+|+.|+||||+++.++...+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999986654
No 366
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.27 E-value=0.021 Score=53.41 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=22.3
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
...|.|.|++|+||||+|+.++...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999998865
No 367
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.27 E-value=0.026 Score=51.93 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=22.4
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
...|+|.|++|+||||+|+.++...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998865
No 368
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.26 E-value=0.035 Score=52.94 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=28.7
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
...++.|.|.+|+||||||..++......-..++|+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3458999999999999999999876544434566664
No 369
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.25 E-value=0.024 Score=53.29 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.6
Q ss_pred EEEEEEccCchhHHHHHHHHHHHH
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
.+|+|+|+.|+||||+|+.++...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
No 370
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.23 E-value=0.023 Score=52.16 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=22.8
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
..+|+|.|++|+||||+|+.++.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998653
No 371
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.22 E-value=0.021 Score=52.90 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=22.9
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
+..+++|+|+.|+|||||++.++.-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35689999999999999999998754
No 372
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.20 E-value=0.026 Score=50.08 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.4
Q ss_pred EEEEEccCchhHHHHHHHHHHHHh
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
.|+|.|++|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999988653
No 373
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.19 E-value=0.037 Score=51.32 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=24.3
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhc
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRH 107 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~ 107 (714)
..+|+|.|+.|+||||+|+.+++.....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999876543
No 374
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.17 E-value=0.023 Score=52.45 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.3
Q ss_pred EEEEEEccCchhHHHHHHHHHH
Q 042374 81 RIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
.+|+|.|+.|+||||+++.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999987
No 375
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.17 E-value=0.13 Score=55.62 Aligned_cols=28 Identities=32% Similarity=0.310 Sum_probs=23.9
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhc
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRH 107 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~ 107 (714)
.+++.|.|.+|.||||++..+...+...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 3588899999999999999999866554
No 376
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.16 E-value=0.028 Score=51.28 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.5
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
..+|+|.|++|+||||+|+.++...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 377
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.16 E-value=0.2 Score=53.48 Aligned_cols=57 Identities=7% Similarity=-0.054 Sum_probs=41.3
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhc-ccceEEeeechhcccccChHHHHHHHHHHHhCCC
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRH-FQGKCFMANVREESNKMGAIHVRDEVISQVLGDK 141 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (714)
...++.|.|.+|+||||||..++..+..+ -..++|+. -.....++...++....+.+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s------~E~s~~~l~~r~~~~~~~~~ 298 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM------LEESVEETAEDLIGLHNRVR 298 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE------SSSCHHHHHHHHHHHHTTSC
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe------ccCCHHHHHHHHHHHHcCCC
Confidence 34588999999999999999999876554 34566664 34456677777776655543
No 378
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.15 E-value=0.022 Score=53.04 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=22.4
Q ss_pred EEEEEccCchhHHHHHHHHHHHHhh
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
+|+|.|+.|+||||+|+.+......
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987653
No 379
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.11 E-value=0.14 Score=53.77 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.5
Q ss_pred EEEEEccCchhHHHHHHHHHHHHhhcc
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQISRHF 108 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~~~f 108 (714)
.+.|.|.+|+|||+++..++..+....
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 889999999999999999998765543
No 380
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.11 E-value=0.02 Score=53.53 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=22.7
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
+..+++|+|+.|+|||||++.++...
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35689999999999999999998754
No 381
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.10 E-value=0.038 Score=54.01 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=23.1
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
....|.|.|++|+||||+|+.+..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998764
No 382
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.06 E-value=0.028 Score=55.54 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=24.6
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
.+..+|+|+|+.|+|||||++.++.-..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4577999999999999999999998654
No 383
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.03 E-value=0.14 Score=54.89 Aligned_cols=134 Identities=13% Similarity=0.174 Sum_probs=66.7
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhh---c--c-cceEEeeechhcccccChHHHHHHH----------HHHHhCCCCC
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISR---H--F-QGKCFMANVREESNKMGAIHVRDEV----------ISQVLGDKNL 143 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~---~--f-~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 143 (714)
..+++|+|+.|.|||||++.++...+. . + ..+.++..-.......++.+.+... +.+++..-..
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l 391 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGI 391 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence 458999999999999999999963221 1 1 1233443222111122333322211 1122211111
Q ss_pred ---------cccchhhH-HHHHHHhcCCcEEEEEeCCCCC--HHHHHHHhcCCCCC--CCCcEEEEEcCChhHHHhcCCC
Q 042374 144 ---------KIGTLVIH-QNIRKRLRQVKMLIVLDAVHDG--FTQLESLAGELDKF--TTGSRIIITTRDKQVLDKCGVN 209 (714)
Q Consensus 144 ---------~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~--~~~~~~l~~~l~~~--~~gs~IliTtR~~~v~~~~~~~ 209 (714)
..+.-+.. -.+..++..++-++++|+-.+. ......+...+... ..|..||++|.+...+..+. +
T Consensus 392 ~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~-d 470 (538)
T 1yqt_A 392 IDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS-D 470 (538)
T ss_dssp GGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC-S
T ss_pred hhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC-C
Confidence 01111122 3456677788889999997554 11112222221111 23556888888877665542 3
Q ss_pred eEEec
Q 042374 210 YVYEV 214 (714)
Q Consensus 210 ~~~~l 214 (714)
+++.+
T Consensus 471 rv~vl 475 (538)
T 1yqt_A 471 RLMVF 475 (538)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44443
No 384
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.01 E-value=0.055 Score=48.62 Aligned_cols=28 Identities=29% Similarity=0.289 Sum_probs=23.9
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
...+|+|.|+.|+||||+++.++.....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3568899999999999999999986643
No 385
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.99 E-value=0.026 Score=52.59 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=23.6
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
+..+++|+|+.|+|||||++.++....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 356899999999999999999988654
No 386
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.94 E-value=0.022 Score=53.34 Aligned_cols=26 Identities=23% Similarity=0.089 Sum_probs=22.7
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
...|.|.|++|+||||+|+.++.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998653
No 387
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.93 E-value=0.03 Score=53.64 Aligned_cols=28 Identities=14% Similarity=0.392 Sum_probs=23.7
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
....+|+|.|+.|+||||+|+.+.....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3467899999999999999999988654
No 388
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.93 E-value=0.051 Score=52.14 Aligned_cols=112 Identities=17% Similarity=0.212 Sum_probs=60.4
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhccccc-ChHHHHHHHHHH-HhCCCCCcccchhhHHHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKM-GAIHVRDEVISQ-VLGDKNLKIGTLVIHQNIR 155 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~ 155 (714)
.+..+++|+|+.|.|||||++.++......+...+++.... +.... .... ++.+ ..+. ........+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-i~~~~~~~~~----~v~q~~~gl-----~~~~l~~~la 92 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEYVFKHKKS----IVNQREVGE-----DTKSFADALR 92 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-CCSCCCCSSS----EEEEEEBTT-----TBSCHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-ceeecCCcce----eeeHHHhCC-----CHHHHHHHHH
Confidence 34568999999999999999999986544334445443110 00000 0000 0000 0010 0011125566
Q ss_pred HHhcCCcEEEEEeCCCCCHHHHHHHhcCCCCCCCCcEEEEEcCChhHH
Q 042374 156 KRLRQVKMLIVLDAVHDGFTQLESLAGELDKFTTGSRIIITTRDKQVL 203 (714)
Q Consensus 156 ~~l~~k~~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IliTtR~~~v~ 203 (714)
..+..++=++++|+..+. +....+... ...|..|++||.+....
T Consensus 93 ~aL~~~p~illlDEp~D~-~~~~~~l~~---~~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 93 AALREDPDVIFVGEMRDL-ETVETALRA---AETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HHHHHCCSEEEESCCCSH-HHHHHHHHH---HHTTCEEEEEECCSSHH
T ss_pred HHHhhCCCEEEeCCCCCH-HHHHHHHHH---HccCCEEEEEeCcchHH
Confidence 666667778999999754 333333322 12466788888776543
No 389
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.90 E-value=0.032 Score=53.22 Aligned_cols=27 Identities=19% Similarity=0.365 Sum_probs=23.5
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
.+..+|+|.|+.|+|||||++.++...
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998754
No 390
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.87 E-value=0.052 Score=48.33 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=23.8
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
.++++|+|..|+|||||+..+......
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 568999999999999999999987654
No 391
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.86 E-value=0.028 Score=52.93 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.2
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
...|+|.|++|+||||+|+.++.+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998764
No 392
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.86 E-value=0.028 Score=53.82 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.9
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
...+|+|+|+.|+||||+++.++.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34589999999999999999999765
No 393
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.83 E-value=0.037 Score=52.88 Aligned_cols=37 Identities=24% Similarity=0.202 Sum_probs=27.0
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHh-hcccceEEee
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQIS-RHFQGKCFMA 115 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~ 115 (714)
+..+++|+|+.|+|||||++.++.... ..-..++++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 456899999999999999999985322 2334455554
No 394
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.81 E-value=0.04 Score=51.08 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=23.8
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
...+|.|.|+.|+||||+++.++....
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457899999999999999999998664
No 395
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.81 E-value=0.053 Score=54.50 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=24.6
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
+..+++|+|+.|+||||+++.++...+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 4679999999999999999999986654
No 396
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.80 E-value=0.031 Score=51.63 Aligned_cols=22 Identities=50% Similarity=0.517 Sum_probs=20.2
Q ss_pred EEEEEEccCchhHHHHHHHHHH
Q 042374 81 RIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
.+|+|.|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 397
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.80 E-value=0.025 Score=53.79 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=22.8
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
..+|+|+|+.|+||||+++.++....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34799999999999999999998654
No 398
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.79 E-value=0.14 Score=52.90 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=22.5
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
...+|.|+|++|+||||+|+.++.+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998643
No 399
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.76 E-value=0.065 Score=50.21 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=23.7
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
....|+|+|.+|+|||||+..++.....
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 4678899999999999999999986433
No 400
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.71 E-value=0.036 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.5
Q ss_pred EEEEEccCchhHHHHHHHHHHHH
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
.|+|.|++|+||||+|+.++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 401
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.68 E-value=0.034 Score=53.33 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=23.6
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
...+|.|.|++|+||||+|+.++....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467899999999999999999987653
No 402
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.68 E-value=0.051 Score=50.74 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=24.8
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhc
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRH 107 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~ 107 (714)
...+|+|+|.+|+|||||+..+.......
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 46789999999999999999999875444
No 403
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.67 E-value=0.23 Score=51.00 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=27.9
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEe
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFM 114 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 114 (714)
...+++++|.+|+||||++..++......-..+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 467999999999999999999998766543333433
No 404
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.66 E-value=0.23 Score=53.85 Aligned_cols=132 Identities=15% Similarity=0.147 Sum_probs=67.1
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhh---c--c-cceEEeeechhcccccChHHHH--------------HHHHHHHhC
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISR---H--F-QGKCFMANVREESNKMGAIHVR--------------DEVISQVLG 139 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~---~--f-~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~ 139 (714)
..+++|+|+.|+|||||++.++..... . + ..+.++..-.......++.+.+ .+++.. ++
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~-~~ 460 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKP-LG 460 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHH-HT
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH-cC
Confidence 458999999999999999999863221 1 1 1233443322111112222222 222222 22
Q ss_pred CCCCc------ccchhhH-HHHHHHhcCCcEEEEEeCCCCC-----HHHHHHHhcCCCCCCCCcEEEEEcCChhHHHhcC
Q 042374 140 DKNLK------IGTLVIH-QNIRKRLRQVKMLIVLDAVHDG-----FTQLESLAGELDKFTTGSRIIITTRDKQVLDKCG 207 (714)
Q Consensus 140 ~~~~~------~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~-----~~~~~~l~~~l~~~~~gs~IliTtR~~~v~~~~~ 207 (714)
-.... .+.-+.. -.+...|...+-++++|+-... ...+..+...+. ...|..||++|.+...+..+
T Consensus 461 l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~-~~~g~tvi~vsHd~~~~~~~- 538 (607)
T 3bk7_A 461 IIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM-EKNEKTALVVEHDVLMIDYV- 538 (607)
T ss_dssp CTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH-HHTTCEEEEECSCHHHHHHH-
T ss_pred CchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHHHHh-
Confidence 22111 1111222 3456677788889999997543 112222222221 12356788888888766654
Q ss_pred CCeEEec
Q 042374 208 VNYVYEV 214 (714)
Q Consensus 208 ~~~~~~l 214 (714)
+++++.+
T Consensus 539 adrv~vl 545 (607)
T 3bk7_A 539 SDRLIVF 545 (607)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 2344443
No 405
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=93.65 E-value=0.31 Score=49.77 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=35.2
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHH
Q 042374 57 DGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
..++|....++++.+.+..-......|.|.|.+|+|||++|+.+...
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHh
Confidence 46889888888877766532222234589999999999999999874
No 406
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.65 E-value=0.037 Score=50.27 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=22.0
Q ss_pred eEEEEEEccCchhHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
..+|+|.|+.|+||||+|+.+...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999875
No 407
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.63 E-value=0.068 Score=65.20 Aligned_cols=83 Identities=24% Similarity=0.197 Sum_probs=49.9
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCC-----cccchhhH-H
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNL-----KIGTLVIH-Q 152 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~ 152 (714)
..+.|.|+|++|+|||+||.+++.....+=..+.|+. .....+... ++. .|.+-. ..+..+.. +
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~----~e~~~~~l~-----a~~-~G~dl~~l~v~~~~~~E~~l~ 1495 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHALDPIY-----ARK-LGVDIDNLLCSQPDTGEQALE 1495 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC----TTSCCCHHH-----HHH-TTCCTTTCEEECCSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE----cccccCHHH-----HHH-cCCCchhceeecCChHHHHHH
Confidence 4568999999999999999999987665545667765 333323222 222 332110 11112222 4
Q ss_pred HHHHHh-cCCcEEEEEeCCC
Q 042374 153 NIRKRL-RQVKMLIVLDAVH 171 (714)
Q Consensus 153 ~l~~~l-~~k~~LlVlDdv~ 171 (714)
.+.+.. +.+.-+||+|.+.
T Consensus 1496 ~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1496 ICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHHHTCCSEEEESCGG
T ss_pred HHHHHHhcCCCCEEEEcChh
Confidence 444443 3667899999984
No 408
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.61 E-value=0.17 Score=50.31 Aligned_cols=74 Identities=15% Similarity=0.155 Sum_probs=47.8
Q ss_pred cccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHh
Q 042374 59 FVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVL 138 (714)
Q Consensus 59 ~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (714)
+.|...-+..|.+++. +=....++.|.|.+|+||||+|..++..+..+-..++|+ +-.....++...++....
T Consensus 26 ~~gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f------SlEms~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 26 VTGIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF------SLEMSAEQLALRALSDLT 98 (338)
T ss_dssp CCSBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE------ESSSCHHHHHHHHHHHHH
T ss_pred cCcccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE------eCCCCHHHHHHHHHHHhh
Confidence 4444444444544442 223345889999999999999999998765433445555 345666777777776644
Q ss_pred C
Q 042374 139 G 139 (714)
Q Consensus 139 ~ 139 (714)
+
T Consensus 99 ~ 99 (338)
T 4a1f_A 99 S 99 (338)
T ss_dssp C
T ss_pred C
Confidence 4
No 409
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=93.57 E-value=0.12 Score=52.39 Aligned_cols=48 Identities=29% Similarity=0.327 Sum_probs=34.9
Q ss_pred CCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 57 DGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 57 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
..++|....+.++.+.+..-......|.|.|.+|.||+++|+.+...-
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s 176 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYS 176 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhc
Confidence 568898887777766654322222346799999999999999998643
No 410
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.56 E-value=0.085 Score=49.53 Aligned_cols=28 Identities=29% Similarity=0.499 Sum_probs=24.8
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
....|+|.|+.|+||||+++.++.....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999999987764
No 411
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.56 E-value=0.035 Score=50.33 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.5
Q ss_pred EEEEEccCchhHHHHHHHHHHHHh
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
+++|+|+.|+|||||++.++...+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999998653
No 412
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.53 E-value=0.065 Score=53.06 Aligned_cols=38 Identities=24% Similarity=0.366 Sum_probs=29.1
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
...++|+|+|.||+||||+|..++..+...-..+.-+.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35789999999999999999999987665433445444
No 413
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.53 E-value=0.059 Score=51.42 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=26.9
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHH-HhhcccceEEee
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQ-ISRHFQGKCFMA 115 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~-~~~~f~~~~~~~ 115 (714)
...++.|.|.+|+|||++|..++.. ....-..++|+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 3568899999999999999998764 333334455553
No 414
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.44 E-value=0.13 Score=47.61 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=24.7
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhc
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRH 107 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~ 107 (714)
...|+|.|+.|+||||+++.++......
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999987654
No 415
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.42 E-value=0.041 Score=51.25 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.3
Q ss_pred EEEEEccCchhHHHHHHHHHHHH
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
.|+|.|++|+||||+|+.++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998654
No 416
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.41 E-value=0.036 Score=51.68 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=22.0
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
...|.|.|++|+||||+|+.++.+.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999865
No 417
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.37 E-value=0.039 Score=50.82 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.2
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
...|+|.|+.|+||||+++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998765
No 418
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.36 E-value=0.12 Score=50.81 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=28.1
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhccc-ceEEee
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQ-GKCFMA 115 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~ 115 (714)
...+++|.|.+|+|||||++.++..+...-. .+.|+.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4558999999999999999999986654322 455554
No 419
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.36 E-value=0.067 Score=56.35 Aligned_cols=51 Identities=2% Similarity=0.011 Sum_probs=37.3
Q ss_pred CCCcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 56 LDGFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 56 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
++....|.+..+.+.+..........+|.+.|++|+||||+|+.++.++..
T Consensus 371 ~P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 371 IPEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCTTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred CCccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 344555666666666665333334578999999999999999999998753
No 420
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.36 E-value=0.076 Score=48.99 Aligned_cols=33 Identities=21% Similarity=-0.010 Sum_probs=24.7
Q ss_pred EEEEEccCchhHHHHHHHHHHHHhhcccceEEe
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQISRHFQGKCFM 114 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 114 (714)
.|.+.|.||+||||+|..++.....+-..+.++
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~ 40 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAG 40 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEE
Confidence 477899999999999999998765543334333
No 421
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.34 E-value=0.045 Score=51.25 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=22.3
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
..+|+|.|++|+||||+|+.++...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998765
No 422
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.31 E-value=0.045 Score=54.25 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.5
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHh
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
.+|+|.|+.|+||||||..++....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998653
No 423
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.29 E-value=0.069 Score=55.62 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=28.0
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
...+++|+|..|+|||||++.++...+.. ...+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 46799999999999999999999866543 3444443
No 424
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.24 E-value=0.1 Score=52.04 Aligned_cols=105 Identities=17% Similarity=0.128 Sum_probs=57.2
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHHhc
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKRLR 159 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 159 (714)
...++|+|+.|.|||||++.++..+.. -...+.+......... ...+ .. .+.. . +.......+...+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~-~~~~----~i-~~~~----g-gg~~~r~~la~aL~ 238 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFK-HHKN----YT-QLFF----G-GNITSADCLKSCLR 238 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCS-SCSS----EE-EEEC----B-TTBCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccc-cchh----EE-EEEe----C-CChhHHHHHHHHhh
Confidence 347999999999999999999875433 2455555532211100 0000 00 0000 0 11222266777788
Q ss_pred CCcEEEEEeCCCCCHHHHHHHhcCCCCCCCCcEEEEEcCCh
Q 042374 160 QVKMLIVLDAVHDGFTQLESLAGELDKFTTGSRIIITTRDK 200 (714)
Q Consensus 160 ~k~~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IliTtR~~ 200 (714)
.++=++++|++... +.++.+.. +.. + +..+++||...
T Consensus 239 ~~p~ilildE~~~~-e~~~~l~~-~~~-g-~~tvi~t~H~~ 275 (330)
T 2pt7_A 239 MRPDRIILGELRSS-EAYDFYNV-LCS-G-HKGTLTTLHAG 275 (330)
T ss_dssp SCCSEEEECCCCST-HHHHHHHH-HHT-T-CCCEEEEEECS
T ss_pred hCCCEEEEcCCChH-HHHHHHHH-Hhc-C-CCEEEEEEccc
Confidence 88889999999876 54554432 221 1 22255555544
No 425
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.21 E-value=0.28 Score=51.38 Aligned_cols=55 Identities=11% Similarity=0.141 Sum_probs=37.5
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhc-ccceEEeeechhcccccChHHHHHHHHHHHhC
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRH-FQGKCFMANVREESNKMGAIHVRDEVISQVLG 139 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (714)
...++.|.|.+|+||||||..++..+... -..++|+. .......+...++....+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s------~E~s~~~l~~r~~~~~~~ 257 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS------LEMSAQQLVMRMLCAEGN 257 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE------SSSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE------CCCCHHHHHHHHHHHHcC
Confidence 34589999999999999999999876543 23566654 234445666666544333
No 426
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.19 E-value=0.03 Score=55.23 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=22.4
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
.++|+|+|+.|+||||||..+++++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999999754
No 427
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.19 E-value=0.029 Score=52.90 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=16.6
Q ss_pred eEEEEEEccCchhHHHHHHHHH-HHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVF-HQI 104 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~-~~~ 104 (714)
..+++|+|+.|+|||||++.++ ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 653
No 428
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.19 E-value=0.048 Score=51.51 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=22.8
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
...|.|.|++|+||||+|+.++++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998753
No 429
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.19 E-value=0.13 Score=46.94 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=27.2
Q ss_pred EEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
-|+|-|..|+||||.++.+++.++.+...+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 3778999999999999999998877655555443
No 430
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.18 E-value=0.051 Score=50.66 Aligned_cols=23 Identities=39% Similarity=0.401 Sum_probs=20.9
Q ss_pred eEEEEEEccCchhHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 431
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.18 E-value=0.13 Score=54.96 Aligned_cols=23 Identities=48% Similarity=0.681 Sum_probs=21.1
Q ss_pred eEEEEEEccCchhHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
..+++|+|+.|+|||||++.++.
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999986
No 432
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.15 E-value=0.042 Score=51.97 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=21.8
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
.+ .+++|+|+.|.|||||++.++.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhC
Confidence 45 7899999999999999999985
No 433
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.09 E-value=0.099 Score=55.90 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=31.8
Q ss_pred cccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 59 FVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 59 ~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
.+.+.+..+.+.......-.+..+++|+|+.|+|||||++.++.....
T Consensus 348 ~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 348 WYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp TTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 344444344444333212234578999999999999999999987653
No 434
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.07 E-value=0.036 Score=52.33 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.4
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+..+++|+|+.|.|||||++.++.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 456899999999999999999985
No 435
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.05 E-value=0.047 Score=59.76 Aligned_cols=45 Identities=22% Similarity=0.331 Sum_probs=36.8
Q ss_pred CcccchhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 58 GFVGLNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 58 ~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
.++|.+..++.+...+..+ ..+.|+|++|+||||||+.++.....
T Consensus 42 ~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred eEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 3789988888887777543 47899999999999999999986543
No 436
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.05 E-value=0.05 Score=52.96 Aligned_cols=24 Identities=25% Similarity=0.595 Sum_probs=21.7
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999983
No 437
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.05 E-value=0.063 Score=54.39 Aligned_cols=27 Identities=30% Similarity=0.192 Sum_probs=23.6
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
...++++|+|++|.|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456699999999999999999999754
No 438
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.05 E-value=0.084 Score=51.06 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=27.2
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
++|+|.|.||+||||+|..++..+..+-..+..++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 57888999999999999999987765433455544
No 439
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.04 E-value=0.28 Score=50.61 Aligned_cols=55 Identities=20% Similarity=0.342 Sum_probs=35.0
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHh-hcccceEEeeechhcccccChHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQIS-RHFQGKCFMANVREESNKMGAIHVRDEVISQ 136 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (714)
+.+.++|.|.+|+|||+|+..+++.+. .+-+.++++- + -.+...+.++.+++...
T Consensus 152 kGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~-i--GER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 152 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG-V--GERTREGNDLYHEMIES 207 (482)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEE-E--SCCHHHHHHHHHHHHHH
T ss_pred cCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEE-C--CCcchHHHHHHHHhhhc
Confidence 345789999999999999999998753 3334444432 2 12233445555555543
No 440
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.04 E-value=0.053 Score=53.34 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.9
Q ss_pred EEEEEEccCchhHHHHHHHHHHHH
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
++|+|+|+.|+||||||+.++.+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999999765
No 441
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.98 E-value=0.053 Score=50.37 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.7
Q ss_pred EEEEEccCchhHHHHHHHHHHHH
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
.|+|.|++|+||||+|+.++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 442
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.97 E-value=0.055 Score=52.67 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.1
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
.++|+|.|+.|+||||||..++.+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3588999999999999999998754
No 443
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.96 E-value=0.055 Score=50.67 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.9
Q ss_pred EEEEEccCchhHHHHHHHHHHHH
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
.|+|.|++|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998765
No 444
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.94 E-value=0.054 Score=53.56 Aligned_cols=28 Identities=32% Similarity=0.335 Sum_probs=24.4
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
....+|+|.|..|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999999987654
No 445
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.93 E-value=0.055 Score=56.03 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=28.0
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
+..+|+|+|.+|+||||++..++.....+-..+..+.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3568999999999999999999987654433344443
No 446
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.90 E-value=0.11 Score=48.34 Aligned_cols=28 Identities=21% Similarity=0.327 Sum_probs=21.7
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhc
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRH 107 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~ 107 (714)
...|.|.|+.|+||||+++.+++.....
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4589999999999999999999987654
No 447
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.89 E-value=0.094 Score=50.44 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=23.7
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
...++.+.|.||+||||++..++....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 356888999999999999999998665
No 448
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.88 E-value=0.058 Score=49.77 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.8
Q ss_pred EEEEEccCchhHHHHHHHHHHHHh
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
+|+|.|+.|+||||+|+.++....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999987653
No 449
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.88 E-value=0.28 Score=49.05 Aligned_cols=28 Identities=25% Similarity=0.118 Sum_probs=23.9
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
..+.++|+|.+|+|||+|+..+++.+..
T Consensus 174 rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 174 KGQRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp TTCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCChhHHHHHHHHHHhh
Confidence 3457899999999999999999987654
No 450
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.85 E-value=0.13 Score=48.21 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=27.3
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhc-ccceEEe
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRH-FQGKCFM 114 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~ 114 (714)
...|.|.|+.|+||||+++.++...... +..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 4689999999999999999999977653 3324443
No 451
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=92.80 E-value=0.46 Score=44.74 Aligned_cols=38 Identities=21% Similarity=0.148 Sum_probs=27.1
Q ss_pred chhhHHHHHhhhcccCCCeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 62 LNSRIEEVKSLLCLESRDVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 62 r~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
|+.+.+.+..++.. + .+.|+|+.|.|||.+|..++...
T Consensus 95 ~~~Q~~ai~~~~~~---~--~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVD---K--RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTT---S--EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhC---C--CEEEEeCCCCCHHHHHHHHHHHc
Confidence 45555556655532 1 27789999999999999888764
No 452
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.79 E-value=0.069 Score=51.86 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=22.9
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
..++|+|.|+.|+||||||..++.+.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35689999999999999999999764
No 453
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.78 E-value=0.15 Score=47.29 Aligned_cols=28 Identities=25% Similarity=0.327 Sum_probs=24.9
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
....|.|.|..|+||||+++.+.+....
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999997765
No 454
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.77 E-value=0.098 Score=51.23 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=27.4
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhhcccceEEee
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMA 115 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 115 (714)
.++|+|.|.||+||||+|..++..+..+-..+..++
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD 37 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 468888999999999999999987655433344443
No 455
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.72 E-value=0.25 Score=53.70 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.1
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+..+++|+|+.|.|||||++.+..
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345899999999999999999875
No 456
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.70 E-value=0.14 Score=51.34 Aligned_cols=30 Identities=27% Similarity=0.321 Sum_probs=25.4
Q ss_pred CCCeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 77 SRDVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 77 ~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
..+..+|+|+|.+|+||||++..++.....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 356789999999999999999999876544
No 457
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.66 E-value=0.15 Score=51.08 Aligned_cols=31 Identities=29% Similarity=0.408 Sum_probs=25.6
Q ss_pred cCCCeEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 76 ESRDVRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 76 ~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
.-.+..+++|+|++|+|||||.+.+......
T Consensus 51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 51 QTGRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 3355779999999999999999999875543
No 458
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.64 E-value=0.045 Score=51.21 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.2
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+..+++|+|+.|.|||||++.++.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999985
No 459
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.56 E-value=0.046 Score=52.56 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.5
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+..+++|+|+.|.|||||++.++.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999985
No 460
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.54 E-value=0.061 Score=48.90 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=21.1
Q ss_pred eEEEEEEccCchhHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
.-.|+|+|.+|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999863
No 461
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.54 E-value=0.059 Score=52.73 Aligned_cols=27 Identities=15% Similarity=0.322 Sum_probs=23.7
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
.+..+++|+|+.|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 456689999999999999999998755
No 462
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.54 E-value=0.042 Score=50.65 Aligned_cols=24 Identities=42% Similarity=0.243 Sum_probs=21.4
Q ss_pred eEEEEEEccCchhHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
..+++|+|+.|.|||||++.++.-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999864
No 463
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.52 E-value=0.054 Score=51.44 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=22.1
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
.+..+++|+|+.|.|||||++.++.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999999985
No 464
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.52 E-value=0.18 Score=42.27 Aligned_cols=51 Identities=24% Similarity=0.238 Sum_probs=27.8
Q ss_pred EEEecCCCCC--CCCCCCCCCCcccccCCCCCCccccCCcc--cccccEEeccCCc
Q 042374 387 YLHWHEYPLK--TLPFDFEPENLTELSLPYSKVEQSWGGKR--LLSSKFIDLSHSQ 438 (714)
Q Consensus 387 ~L~l~~~~~~--~~~~~~~~~~L~~L~l~~~~i~~~~~~~~--~~~L~~L~l~~~~ 438 (714)
.++.++..++ .+|..+ +.++++|+|++|+|+.++...+ +++|+.|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4556666665 665442 2446666666666665555443 4455555555554
No 465
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=92.46 E-value=0.11 Score=47.47 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=19.2
Q ss_pred EEEEEEccCchhHHHHHHHHHHH
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
.++.|.|.+|.|||++|......
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 36789999999999999886544
No 466
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.45 E-value=0.048 Score=52.31 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.6
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+..+++|+|+.|.|||||++.++.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 456899999999999999999985
No 467
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.43 E-value=0.18 Score=46.57 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=23.9
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhhc
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISRH 107 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~~ 107 (714)
..|.+.|..|+||||+++.++..+...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 578999999999999999999977654
No 468
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.42 E-value=0.058 Score=52.01 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.6
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+..+++|+|+.|.|||||++.++.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999986
No 469
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.42 E-value=0.21 Score=51.78 Aligned_cols=54 Identities=20% Similarity=0.275 Sum_probs=35.6
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHh-hcccceEEeeechhcccccChHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQIS-RHFQGKCFMANVREESNKMGAIHVRDEVIS 135 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (714)
+.+.++|.|.+|+|||+|+.++++.+. .+-+.++++- +. .+...+.++.+++..
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~-iG--ER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG-VG--ERTREGNDLYMEMKE 218 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE-ES--CCSHHHHHHHHHHHH
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE-cc--cCcHHHHHHHHhhhc
Confidence 455789999999999999999998754 3445555543 21 223345555555543
No 470
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.27 E-value=0.055 Score=52.27 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.9
Q ss_pred eEEEEEEccCchhHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
..+++|+|+.|.|||||++.++.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 45899999999999999999985
No 471
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.27 E-value=0.57 Score=59.46 Aligned_cols=137 Identities=11% Similarity=0.016 Sum_probs=69.7
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhhcccceEEeeechhcccccChHHHHHHHHHHHhCCCCCcccchhhHHHHHHH-hc
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFMANVREESNKMGAIHVRDEVISQVLGDKNLKIGTLVIHQNIRKR-LR 159 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~ 159 (714)
+-|.++|++|+|||++|+.+..... .+. ...+. ++...+...++ +.+.+.........+.. ..- -.
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~-~~~-~~~in----fsa~ts~~~~~-~~i~~~~~~~~~~~g~~------~~P~~~ 1334 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSS-LYD-VVGIN----FSKDTTTEHIL-SALHRHTNYVTTSKGLT------LLPKSD 1334 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCS-SCE-EEEEE----CCTTCCHHHHH-HHHHHHBCCEEETTTEE------EEEBSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCC-CCc-eEEEE----eecCCCHHHHH-HHHHHHhhhccccCCcc------ccCCCC
Confidence 4678999999999999988765432 222 22333 33333443433 33333232211000000 000 03
Q ss_pred CCcEEEEEeCCCCC-------HHHHHHHhcCCCCC-----CC-------CcEEEEEcCChh------HH-HhcCCCeEEe
Q 042374 160 QVKMLIVLDAVHDG-------FTQLESLAGELDKF-----TT-------GSRIIITTRDKQ------VL-DKCGVNYVYE 213 (714)
Q Consensus 160 ~k~~LlVlDdv~~~-------~~~~~~l~~~l~~~-----~~-------gs~IliTtR~~~------v~-~~~~~~~~~~ 213 (714)
+++.++.+||++-. ....+.+...+... .. +..+|.++-... +. +..+...++.
T Consensus 1335 gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~ 1414 (2695)
T 4akg_A 1335 IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILY 1414 (2695)
T ss_dssp SSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEE
T ss_pred CceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEE
Confidence 67889999997432 12333333322111 11 233444553331 11 1122235789
Q ss_pred cCCCCHHHHHHHHHHhh
Q 042374 214 VEGLEHNKAFELFYRKA 230 (714)
Q Consensus 214 l~~L~~~~~~~l~~~~~ 230 (714)
++..+.++..++|....
T Consensus 1415 i~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1415 LGYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CCCCTTTHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 99999999999987765
No 472
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.26 E-value=0.053 Score=51.83 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.6
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+..+++|+|+.|.|||||++.++.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999985
No 473
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.21 E-value=0.085 Score=46.51 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.9
Q ss_pred EEEEEEccCchhHHHHHHHHHH
Q 042374 81 RIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
..|+|+|.+|+|||||.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999975
No 474
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.20 E-value=0.068 Score=50.98 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.5
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+..+++|+|+.|.|||||++.++.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345899999999999999999986
No 475
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.19 E-value=0.081 Score=49.99 Aligned_cols=27 Identities=22% Similarity=0.275 Sum_probs=23.4
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
....+|+|.|+.|+||||+++.++...
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999998754
No 476
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.17 E-value=0.057 Score=48.61 Aligned_cols=25 Identities=28% Similarity=0.191 Sum_probs=21.8
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQI 104 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~ 104 (714)
.+.|.|.|++|+||||||.+++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4578899999999999999998753
No 477
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.14 E-value=0.056 Score=51.88 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.5
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+..+++|+|+.|.|||||++.++.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999985
No 478
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.11 E-value=0.13 Score=47.26 Aligned_cols=29 Identities=28% Similarity=0.601 Sum_probs=24.8
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHhhccc
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQISRHFQ 109 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~~~f~ 109 (714)
+.|+|-|..|+||||+++.+++.+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 46889999999999999999998865444
No 479
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.09 E-value=0.085 Score=46.08 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.9
Q ss_pred EEEEEEccCchhHHHHHHHHHH
Q 042374 81 RIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
..|+++|.+|+|||||+..+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999999986
No 480
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.07 E-value=0.078 Score=48.53 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.5
Q ss_pred EEEEEEccCchhHHHHHHHHHHH
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
-.|+|+|.+|+|||||++.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999999863
No 481
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.06 E-value=0.061 Score=50.93 Aligned_cols=24 Identities=42% Similarity=0.477 Sum_probs=21.3
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+..+++|+|+.|.|||||++.++.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345899999999999999999985
No 482
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.06 E-value=0.13 Score=50.10 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=23.2
Q ss_pred eEEEEEEccCchhHHHHHHHHHHHHhh
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQISR 106 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~~~~ 106 (714)
..++.|+|++|+|||||+..++..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 458999999999999999999975543
No 483
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.05 E-value=0.057 Score=52.13 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.5
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+..+++|+|+.|.|||||++.++.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999985
No 484
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.05 E-value=0.051 Score=50.27 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.9
Q ss_pred eEEEEEEccCchhHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
..+++|+|+.|.|||||++.++.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999985
No 485
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.04 E-value=0.079 Score=52.26 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.9
Q ss_pred EEEEEEccCchhHHHHHHHHHHH
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
.+|.|.|++|+||||+|+.++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 486
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.02 E-value=0.062 Score=51.50 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.3
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+..+++|+|+.|.|||||++.++.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345899999999999999999985
No 487
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.00 E-value=0.061 Score=51.73 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.3
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+..+++|+|+.|.|||||++.++.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 345899999999999999999985
No 488
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.96 E-value=0.067 Score=52.49 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.4
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
...+++|+|+.|.|||||++.++.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 456899999999999999999875
No 489
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.94 E-value=0.17 Score=55.00 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=21.1
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+..+++|+|+.|.|||||++.+..
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhc
Confidence 345899999999999999998875
No 490
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.92 E-value=0.27 Score=52.63 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=27.0
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcccceEEe
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHFQGKCFM 114 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 114 (714)
...+++|.|.+|+|||||++.++......-..++++
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~ 315 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILF 315 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 456899999999999999999998654332234454
No 491
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.90 E-value=0.065 Score=50.94 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.3
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+..+++|+|+.|.|||||++.++.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999985
No 492
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.86 E-value=0.062 Score=51.77 Aligned_cols=24 Identities=25% Similarity=0.255 Sum_probs=21.4
Q ss_pred CeEEEEEEccCchhHHHHHHHHHH
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
+..+++|+|+.|.|||||++.++.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 455899999999999999999985
No 493
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.86 E-value=0.081 Score=51.05 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=20.2
Q ss_pred EEEEEccCchhHHHHHHHHHHH
Q 042374 82 IVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
.++|+|+.|+|||||.+.++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999974
No 494
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.81 E-value=0.07 Score=54.68 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.4
Q ss_pred CCeEEEEEEccCchhHHHHHHHHHH
Q 042374 78 RDVRIVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 78 ~~~~vv~i~G~~GiGKTtLa~~~~~ 102 (714)
....+++|+|..|+|||||.+.+..
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhC
Confidence 3456999999999999999999986
No 495
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.80 E-value=0.064 Score=48.37 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=19.0
Q ss_pred EEEEEccCchhHHHHHHHHHH
Q 042374 82 IVGIWGMGGIGKTTIASAVFH 102 (714)
Q Consensus 82 vv~i~G~~GiGKTtLa~~~~~ 102 (714)
.|+|+|.+|+|||||++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999875
No 496
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.79 E-value=0.096 Score=52.97 Aligned_cols=25 Identities=20% Similarity=0.506 Sum_probs=22.4
Q ss_pred EEEEEEccCchhHHHHHHHHHHHHh
Q 042374 81 RIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 81 ~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
++|+|.|+.|+||||||..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5789999999999999999998654
No 497
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.72 E-value=0.053 Score=52.98 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=20.3
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHh
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQIS 105 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~ 105 (714)
+..+|+|.|..|+||||+|+.+.....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345899999999999999999987654
No 498
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=91.71 E-value=0.55 Score=53.44 Aligned_cols=123 Identities=17% Similarity=0.241 Sum_probs=62.2
Q ss_pred eEEEEEEccCchhHHHHHHHHHH-HHhhccc-----ceEEeeech-hcccccCh-----------HHHHHHHHHHHhCCC
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFH-QISRHFQ-----GKCFMANVR-EESNKMGA-----------IHVRDEVISQVLGDK 141 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~-~~~~~f~-----~~~~~~~~~-~~~~~~~~-----------~~~~~~~~~~~~~~~ 141 (714)
..+++|+|+.|.|||||++.++. ++. .++ ...++..-. ......++ .+...+++.. +|-.
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~LagG~i~-g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~-lgL~ 538 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIANGQVD-GFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIE-FGFT 538 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHTCST-TCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHH-TTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC-CCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHH-cCCC
Confidence 34899999999999999999984 221 111 123332100 00011111 1223333433 2321
Q ss_pred C-------CcccchhhH-HHHHHHhcCCcEEEEEeCCCCC--HHHHHHHhcCCCCCCCCcEEEEEcCChhHHHhc
Q 042374 142 N-------LKIGTLVIH-QNIRKRLRQVKMLIVLDAVHDG--FTQLESLAGELDKFTTGSRIIITTRDKQVLDKC 206 (714)
Q Consensus 142 ~-------~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~--~~~~~~l~~~l~~~~~gs~IliTtR~~~v~~~~ 206 (714)
. ...+.-+.. -.+...+..++=+++||+-.+. ......+...+.. .|..||++|.+...+..+
T Consensus 539 ~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~ 611 (986)
T 2iw3_A 539 DEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNV 611 (986)
T ss_dssp HHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHH
T ss_pred hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHh
Confidence 0 111111222 3455666677889999997543 1222222222222 366788888887766543
No 499
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.68 E-value=0.16 Score=54.19 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=25.2
Q ss_pred CeEEEEEEccCchhHHHHHHHHHHHHhhcc
Q 042374 79 DVRIVGIWGMGGIGKTTIASAVFHQISRHF 108 (714)
Q Consensus 79 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~f 108 (714)
...+|.++|++|.||||+|++++......|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 346899999999999999999998765444
No 500
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.65 E-value=0.072 Score=50.63 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.3
Q ss_pred eEEEEEEccCchhHHHHHHHHHHH
Q 042374 80 VRIVGIWGMGGIGKTTIASAVFHQ 103 (714)
Q Consensus 80 ~~vv~i~G~~GiGKTtLa~~~~~~ 103 (714)
..+++|+|+.|.|||||++.++.-
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999998863
Done!