BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042376
         (357 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
          Length = 174

 Score =  169 bits (428), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 76/154 (49%), Positives = 107/154 (69%), Gaps = 5/154 (3%)

Query: 8   VPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEW 67
           +PPGFRF+PTDEEL+  YL +K +   F +++I E+DL K +PW L  +   G   + EW
Sbjct: 20  LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---EKEW 76

Query: 68  YFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKS 127
           YFFS +DRKYP GSR NR   +G+WKATG DK I    +++G++K LVFY G+AP G K+
Sbjct: 77  YFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKT 136

Query: 128 DWIMHEYRLEDGD--DAQSNEDGWVICRVFKKKN 159
           +WIMHEYRL +    +  +  D WV+CR++KK++
Sbjct: 137 NWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQS 170


>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
           Stress-Responsive Nac1
          Length = 174

 Score =  169 bits (427), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 82/159 (51%), Positives = 108/159 (67%), Gaps = 10/159 (6%)

Query: 8   VPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEW 67
           +PPGFRFHPTD+EL+ +YL +K + Q+  + +I EVDL K +PW+L ER   G+    EW
Sbjct: 15  LPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGA---REW 71

Query: 68  YFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKS 127
           YFF+ +DRKYP GSR NRA   G+WKATG DK +    + +G++K LVFY G+AP G K+
Sbjct: 72  YFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKT 131

Query: 128 DWIMHEYRLEDGDDAQSNE-------DGWVICRVFKKKN 159
           DWIMHEYRL D   A +         D WV+CR++ KKN
Sbjct: 132 DWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKN 170


>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
 pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
          Length = 171

 Score =  169 bits (427), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 76/154 (49%), Positives = 107/154 (69%), Gaps = 5/154 (3%)

Query: 8   VPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEW 67
           +PPGFRF+PTDEEL+  YL +K +   F +++I E+DL K +PW L  +   G   + EW
Sbjct: 17  LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---EKEW 73

Query: 68  YFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKS 127
           YFFS +DRKYP GSR NR   +G+WKATG DK I    +++G++K LVFY G+AP G K+
Sbjct: 74  YFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKT 133

Query: 128 DWIMHEYRLEDGD--DAQSNEDGWVICRVFKKKN 159
           +WIMHEYRL +    +  +  D WV+CR++KK++
Sbjct: 134 NWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQS 167


>pdb|3BRF|A Chain A, Csl (Lag-1) Bound To Dna With Lin-12 Ram Peptide, C2221
          Length = 478

 Score = 28.1 bits (61), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 10/96 (10%)

Query: 250 DSPAAMVKQLMSNTSRDCESGSENLRYHHQQACEPGLEVGTCEPTATHQMVAATTGG--- 306
           D  A + K L ++  +D  +  EN   H QQA E    +G    T+  Q +  +TG    
Sbjct: 69  DRVAQLYKTLKASAQKD--AAIENDPIHEQQATELVAYIGIGSDTSERQQLDFSTGKVRH 126

Query: 307 ----RDGQGLNDWTMLDRLVTEDSSKGVTFEDPNAQ 338
               R    + D+     L   DS K   F D NAQ
Sbjct: 127 PGDQRQDPNIYDYCAAKTLYISDSDKRKYF-DLNAQ 161


>pdb|1TTU|A Chain A, Crystal Structure Of Csl Bound To Dna
 pdb|2FO1|A Chain A, Crystal Structure Of The Csl-Notch-Mastermind Ternary
           Complex Bound To Dna
 pdb|3BRD|A Chain A, Csl (Lag-1) Bound To Dna With Lin-12 Ram Peptide, P212121
          Length = 477

 Score = 28.1 bits (61), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 10/96 (10%)

Query: 250 DSPAAMVKQLMSNTSRDCESGSENLRYHHQQACEPGLEVGTCEPTATHQMVAATTGG--- 306
           D  A + K L ++  +D  +  EN   H QQA E    +G    T+  Q +  +TG    
Sbjct: 68  DRVAQLYKTLKASAQKD--AAIENDPIHEQQATELVAYIGIGSDTSERQQLDFSTGKVRH 125

Query: 307 ----RDGQGLNDWTMLDRLVTEDSSKGVTFEDPNAQ 338
               R    + D+     L   DS K   F D NAQ
Sbjct: 126 PGDQRQDPNIYDYCAAKTLYISDSDKRKYF-DLNAQ 160


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,688,217
Number of Sequences: 62578
Number of extensions: 427466
Number of successful extensions: 712
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 703
Number of HSP's gapped (non-prelim): 9
length of query: 357
length of database: 14,973,337
effective HSP length: 100
effective length of query: 257
effective length of database: 8,715,537
effective search space: 2239893009
effective search space used: 2239893009
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)