Query 042376
Match_columns 357
No_of_seqs 146 out of 955
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 09:24:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 6.8E-53 2.3E-57 379.5 16.2 155 3-160 10-171 (174)
2 1ut7_A No apical meristem prot 100.0 2.4E-52 8.1E-57 374.9 15.9 154 4-160 13-168 (171)
3 1ldd_A APC2WHB, anaphase promo 25.3 36 0.0012 26.2 2.2 28 8-36 36-64 (74)
4 3ncq_A Nitrogen regulatory pro 15.2 47 0.0016 27.3 0.9 16 265-280 103-118 (119)
5 2j9c_A GLNK1, hypothetical nit 10.5 84 0.0029 25.4 1.0 15 265-279 105-119 (119)
6 4dox_A Coat protein; all helix 10.4 1.1E+02 0.0037 28.3 1.8 20 11-30 158-177 (226)
7 3nr5_A MAF1, repressor of RNA 9.9 66 0.0023 28.3 0.2 13 40-52 119-131 (164)
8 3dz1_A Dihydrodipicolinate syn 8.1 1.5E+02 0.0051 27.8 1.9 17 8-26 109-125 (313)
9 1cmb_A Met APO-repressor; DNA- 7.7 3.6E+02 0.012 21.7 3.6 39 15-57 50-88 (104)
10 1f6k_A N-acetylneuraminate lya 7.6 1.5E+02 0.0052 27.4 1.6 18 8-26 106-123 (293)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=6.8e-53 Score=379.54 Aligned_cols=155 Identities=52% Similarity=1.021 Sum_probs=135.2
Q ss_pred CCCCCCCCCceeCCChHHHHHHHHHHHHcCCCCCccceeeecCCCCCChhhhhhhccCCCCCCeeEEEeecCCcCCCCCc
Q 042376 3 SSGGGVPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEWYFFSHKDRKYPTGSR 82 (357)
Q Consensus 3 ~~~~~LPPGfRF~PTDEELI~~YLr~KI~g~pl~~~vI~evDVY~~ePweLp~~~~~g~~~d~eWYFFspr~rK~~~GsR 82 (357)
....+|||||||+|||||||.+||++|+.|.+++.++|.++|||++|||+|++.+.. ++++||||+++++|+++|.|
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~---g~~ewYFFs~r~~ky~~g~R 86 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALF---GAREWYFFTPRDRKYPNGSR 86 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSS---CSSEEEEEEECCC-----CC
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhcc---CCceEEEEeccccccCCCCC
Confidence 345589999999999999999999999999999999999999999999999987643 36899999999999999999
Q ss_pred cccccCCCeeeecCCCeEEecCCeeeeeEEEEEEeeCCCCCCCCcCeEEEEEEeCCCCCCC-------CCCCceEEEEEE
Q 042376 83 TNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKSDWIMHEYRLEDGDDAQ-------SNEDGWVICRVF 155 (357)
Q Consensus 83 ~~RatggG~WK~tG~~K~I~~~g~vIG~KKtLvFY~gr~p~g~KTgWvMhEYrL~~~~~~~-------~~~d~~VLCRIy 155 (357)
.+|++++||||++|+++.|..++++||+||+|+||.++++++.||+|+||||+|.+..... ...++|||||||
T Consensus 87 ~nR~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf 166 (174)
T 3ulx_A 87 PNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLY 166 (174)
T ss_dssp SCEEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEE
T ss_pred ceeecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEE
Confidence 9999999999999999999988999999999999999999999999999999999864321 245789999999
Q ss_pred EeCCc
Q 042376 156 KKKNL 160 (357)
Q Consensus 156 kK~~~ 160 (357)
+|++.
T Consensus 167 ~K~~~ 171 (174)
T 3ulx_A 167 NKKNE 171 (174)
T ss_dssp ESCC-
T ss_pred EcCCC
Confidence 99874
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=2.4e-52 Score=374.95 Aligned_cols=154 Identities=49% Similarity=0.998 Sum_probs=131.0
Q ss_pred CCCCCCCCceeCCChHHHHHHHHHHHHcCCCCCccceeeecCCCCCChhhhhhhccCCCCCCeeEEEeecCCcCCCCCcc
Q 042376 4 SGGGVPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEWYFFSHKDRKYPTGSRT 83 (357)
Q Consensus 4 ~~~~LPPGfRF~PTDEELI~~YLr~KI~g~pl~~~vI~evDVY~~ePweLp~~~~~g~~~d~eWYFFspr~rK~~~GsR~ 83 (357)
...+|||||||+|||||||.+||++|+.+.+++.++|+++|||.+|||+|++.... ++++||||+++++|+++|.|+
T Consensus 13 ~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~---g~~ewyFFs~r~~k~~~g~R~ 89 (171)
T 1ut7_A 13 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALF---GEKEWYFFSPRDRKYPNGSRP 89 (171)
T ss_dssp CSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSS---CSSEEEEEEECCC-------C
T ss_pred cccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhc---CCccEEEEeccccccCCCCcc
Confidence 34579999999999999999999999999999999999999999999999998643 468999999999999999999
Q ss_pred ccccCCCeeeecCCCeEEecCCeeeeeEEEEEEeeCCCCCCCCcCeEEEEEEeCCCCCCC--CCCCceEEEEEEEeCCc
Q 042376 84 NRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKSDWIMHEYRLEDGDDAQ--SNEDGWVICRVFKKKNL 160 (357)
Q Consensus 84 ~RatggG~WK~tG~~K~I~~~g~vIG~KKtLvFY~gr~p~g~KTgWvMhEYrL~~~~~~~--~~~d~~VLCRIykK~~~ 160 (357)
+|++++||||++|+++.|..++.+||+||+|+||+++++++.||+|+||||+|....... ...++|||||||+|+..
T Consensus 90 ~R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 90 NRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp CEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred cccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence 999999999999999999988899999999999999999999999999999999875321 34689999999999874
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=25.30 E-value=36 Score=26.23 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=22.5
Q ss_pred CCCCceeCC-ChHHHHHHHHHHHHcCCCCC
Q 042376 8 VPPGFRFHP-TDEELLHYYLRKKVSFQKFD 36 (357)
Q Consensus 8 LPPGfRF~P-TDEELI~~YLr~KI~g~pl~ 36 (357)
+|.|+.|.. |++||-. ||..|+....+.
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 367899998 8888887 799998877543
No 4
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=15.21 E-value=47 Score=27.34 Aligned_cols=16 Identities=38% Similarity=0.696 Sum_probs=7.8
Q ss_pred CCccCCcccccccccc
Q 042376 265 RDCESGSENLRYHHQQ 280 (357)
Q Consensus 265 ~~~~~~~~~~~~~~~~ 280 (357)
|.-|.|.++|.+|||+
T Consensus 103 rTge~g~~a~~~~~~~ 118 (119)
T 3ncq_A 103 RTGERGDDSLEHHHHH 118 (119)
T ss_dssp TTCCBSGGGC------
T ss_pred cCCCccHHHHhhhccC
Confidence 6667888888888773
No 5
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=10.47 E-value=84 Score=25.37 Aligned_cols=15 Identities=47% Similarity=0.623 Sum_probs=8.4
Q ss_pred CCccCCccccccccc
Q 042376 265 RDCESGSENLRYHHQ 279 (357)
Q Consensus 265 ~~~~~~~~~~~~~~~ 279 (357)
|.=|.|.++|++|||
T Consensus 105 rtge~g~~a~~~~~~ 119 (119)
T 2j9c_A 105 RTKEEGKEALLEHHH 119 (119)
T ss_dssp TTCCBSGGGGSCC--
T ss_pred cCCCcchhHhhcccC
Confidence 455566777777664
No 6
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=10.39 E-value=1.1e+02 Score=28.33 Aligned_cols=20 Identities=35% Similarity=0.443 Sum_probs=15.2
Q ss_pred CceeCCChHHHHHHHHHHHH
Q 042376 11 GFRFHPTDEELLHYYLRKKV 30 (357)
Q Consensus 11 GfRF~PTDEELI~~YLr~KI 30 (357)
|..+.||++|+|.+=..+++
T Consensus 158 GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 158 GLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp CCSSCCCHHHHHHHHTC---
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 89999999999987665553
No 7
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=9.90 E-value=66 Score=28.32 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=10.7
Q ss_pred eeeecCCCCCChh
Q 042376 40 IREVDLNKMEPWE 52 (357)
Q Consensus 40 I~evDVY~~ePwe 52 (357)
+.++|||++.|..
T Consensus 119 l~dC~IYsY~Pd~ 131 (164)
T 3nr5_A 119 LAECDIYSYNPDL 131 (164)
T ss_dssp GGGCEEEEECCCG
T ss_pred ccCCeEEEEcCCC
Confidence 5678999999973
No 8
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=8.09 E-value=1.5e+02 Score=27.77 Aligned_cols=17 Identities=35% Similarity=0.638 Sum_probs=13.2
Q ss_pred CCCCceeCCChHHHHHHHH
Q 042376 8 VPPGFRFHPTDEELLHYYL 26 (357)
Q Consensus 8 LPPGfRF~PTDEELI~~YL 26 (357)
+||- |.||+++|+.||-
T Consensus 109 ~~P~--~~~s~~~l~~~f~ 125 (313)
T 3dz1_A 109 APPP--SLRTDEQITTYFR 125 (313)
T ss_dssp CCCT--TCCSHHHHHHHHH
T ss_pred CCCC--CCCCHHHHHHHHH
Confidence 5664 5699999999765
No 9
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=7.69 E-value=3.6e+02 Score=21.74 Aligned_cols=39 Identities=28% Similarity=0.273 Sum_probs=27.6
Q ss_pred CCChHHHHHHHHHHHHcCCCCCccceeeecCCCCCChhhhhhh
Q 042376 15 HPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERC 57 (357)
Q Consensus 15 ~PTDEELI~~YLr~KI~g~pl~~~vI~evDVY~~ePweLp~~~ 57 (357)
|-|..||++--...-..|+|+|.+ .|+-+..|.++|...
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~D----~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPDD----ADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCCG----GGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCCc----hhhhhcCCccchHHH
Confidence 467888885444455789999854 478888888887643
No 10
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=7.62 E-value=1.5e+02 Score=27.37 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=14.1
Q ss_pred CCCCceeCCChHHHHHHHH
Q 042376 8 VPPGFRFHPTDEELLHYYL 26 (357)
Q Consensus 8 LPPGfRF~PTDEELI~~YL 26 (357)
+||-| |.||+++|+.||-
T Consensus 106 ~~P~y-~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 106 VTPFY-YKFSFPEIKHYYD 123 (293)
T ss_dssp ECCCS-SCCCHHHHHHHHH
T ss_pred CCCCC-CCCCHHHHHHHHH
Confidence 45644 8899999999875
Done!