Query 042377
Match_columns 255
No_of_seqs 152 out of 1636
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 05:38:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042377.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042377hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1623 Multitransmembrane pro 100.0 3.7E-45 8E-50 319.3 16.3 227 7-238 3-231 (243)
2 PF03083 MtN3_slv: Sugar efflu 99.9 7E-22 1.5E-26 148.3 5.8 86 12-98 2-87 (87)
3 PF03083 MtN3_slv: Sugar efflu 99.9 1.7E-21 3.6E-26 146.2 7.5 87 132-218 1-87 (87)
4 KOG1623 Multitransmembrane pro 99.5 4.5E-14 9.7E-19 124.0 5.1 92 7-99 122-213 (243)
5 COG4095 Uncharacterized conser 99.2 4E-12 8.8E-17 94.1 3.1 83 131-216 5-87 (89)
6 COG4095 Uncharacterized conser 99.2 7.2E-11 1.6E-15 87.5 8.3 81 10-94 5-85 (89)
7 TIGR00951 2A43 Lysosomal Cysti 99.1 1.4E-09 3E-14 95.1 15.0 201 12-213 3-219 (220)
8 KOG3211 Predicted endoplasmic 98.8 2.2E-08 4.7E-13 85.5 8.2 195 12-217 30-226 (230)
9 PF04193 PQ-loop: PQ loop repe 98.3 1.9E-06 4.1E-11 60.0 5.9 56 15-70 4-59 (61)
10 PF04193 PQ-loop: PQ loop repe 97.7 4E-05 8.6E-10 53.2 4.1 49 142-190 10-58 (61)
11 KOG2913 Predicted membrane pro 97.5 0.0013 2.7E-08 59.1 11.2 203 11-217 7-249 (260)
12 smart00679 CTNS Repeated motif 95.4 0.015 3.3E-07 34.9 2.5 28 27-54 2-29 (32)
13 PHA02246 hypothetical protein 94.7 1.4 2.9E-05 36.7 12.6 170 17-206 9-185 (192)
14 PRK01021 lpxB lipid-A-disaccha 94.6 0.47 1E-05 47.4 11.8 186 16-211 13-216 (608)
15 TIGR00951 2A43 Lysosomal Cysti 93.3 0.49 1.1E-05 41.4 8.3 81 12-93 138-219 (220)
16 PF10688 Imp-YgjV: Bacterial i 93.0 1.2 2.6E-05 37.2 9.8 127 48-207 28-154 (163)
17 smart00679 CTNS Repeated motif 92.9 0.073 1.6E-06 31.8 1.7 28 148-175 2-29 (32)
18 PF03650 MPC: Uncharacterised 92.5 0.033 7.2E-07 44.1 -0.2 81 136-221 21-103 (119)
19 KOG1589 Uncharacterized conser 91.3 0.047 1E-06 42.4 -0.6 66 144-214 33-100 (118)
20 PHA02246 hypothetical protein 89.1 4.3 9.3E-05 33.8 9.1 63 20-82 116-178 (192)
21 KOG1589 Uncharacterized conser 87.9 0.42 9.1E-06 37.2 2.4 65 25-95 35-101 (118)
22 PF03650 MPC: Uncharacterised 86.7 0.43 9.4E-06 37.8 1.9 60 38-98 39-100 (119)
23 KOG3145 Cystine transporter Cy 86.0 1.4 3.1E-05 40.3 5.1 211 5-221 116-362 (372)
24 KOG3211 Predicted endoplasmic 80.1 6.1 0.00013 34.4 6.3 73 23-95 152-224 (230)
25 PF07578 LAB_N: Lipid A Biosyn 74.6 2.1 4.5E-05 31.0 1.7 46 159-204 22-67 (72)
26 PF10688 Imp-YgjV: Bacterial i 73.4 4.2 9.2E-05 33.8 3.5 37 50-87 118-154 (163)
27 TIGR00341 conserved hypothetic 72.5 16 0.00034 34.0 7.4 167 47-216 114-292 (325)
28 KOG2913 Predicted membrane pro 71.0 3.4 7.3E-05 37.2 2.6 49 14-65 167-215 (260)
29 PF07578 LAB_N: Lipid A Biosyn 70.0 11 0.00024 27.2 4.6 53 27-82 12-65 (72)
30 PF15102 TMEM154: TMEM154 prot 65.5 4.5 9.8E-05 33.2 2.0 58 190-247 59-139 (146)
31 COG3952 Predicted membrane pro 60.4 4.8 0.0001 31.2 1.2 55 157-211 48-102 (113)
32 PF07857 DUF1632: CEO family ( 56.3 31 0.00067 31.0 5.9 46 172-217 91-139 (254)
33 COG3952 Predicted membrane pro 54.8 1E+02 0.0022 24.1 8.2 49 45-94 56-105 (113)
34 PF05297 Herpes_LMP1: Herpesvi 47.7 6.5 0.00014 36.0 0.1 62 156-219 128-190 (381)
35 PRK05771 V-type ATP synthase s 45.9 1.7E+02 0.0037 29.6 10.0 52 25-87 325-376 (646)
36 KOG4314 Predicted carbohydrate 42.2 66 0.0014 28.2 5.4 56 126-181 127-183 (290)
37 PF10277 Frag1: Frag1/DRAM/Sfk 37.6 2.4E+02 0.0051 23.4 10.4 25 44-68 90-114 (215)
38 PF05602 CLPTM1: Cleft lip and 35.4 94 0.002 29.9 6.0 71 14-84 303-373 (438)
39 PF09586 YfhO: Bacterial membr 32.0 5.2E+02 0.011 26.7 11.2 17 28-44 231-247 (843)
40 COG1269 NtpI Archaeal/vacuolar 31.5 5.5E+02 0.012 26.2 11.0 59 25-94 339-397 (660)
41 KOG3618 Adenylyl cyclase [Gene 30.5 6.2E+02 0.013 27.0 10.8 30 51-80 87-117 (1318)
42 PRK11387 S-methylmethionine tr 29.6 3.8E+02 0.0083 25.6 9.2 21 17-37 371-391 (471)
43 PRK01021 lpxB lipid-A-disaccha 28.9 3.8E+02 0.0082 27.3 9.1 77 10-92 140-217 (608)
44 PRK10580 proY putative proline 27.6 4.5E+02 0.0098 24.9 9.3 26 13-38 360-385 (457)
45 KOG2489 Transmembrane protein 27.5 1.8E+02 0.0039 28.9 6.3 192 16-219 324-555 (592)
46 PF01372 Melittin: Melittin; 27.0 1.1E+02 0.0024 17.4 2.9 17 24-40 8-24 (26)
47 PHA03049 IMV membrane protein; 26.8 32 0.0007 24.4 0.9 25 198-222 8-32 (68)
48 TIGR00341 conserved hypothetic 26.5 1.1E+02 0.0024 28.5 4.6 51 46-97 243-293 (325)
49 KOG3106 ER lumen protein retai 25.3 2.5E+02 0.0054 24.4 6.1 67 26-94 129-199 (212)
50 TIGR02003 PTS-II-BC-unk1 PTS s 25.3 2.3E+02 0.005 28.4 6.9 21 188-210 411-431 (548)
51 PF05977 MFS_3: Transmembrane 24.8 96 0.0021 30.6 4.1 9 233-241 416-424 (524)
52 PF02040 ArsB: Arsenical pump 23.4 6.1E+02 0.013 24.4 9.2 43 11-53 94-141 (423)
53 PF06946 Phage_holin_5: Phage 23.2 3.4E+02 0.0074 20.6 6.3 62 33-95 22-83 (93)
54 KOG2927 Membrane component of 22.4 4.3E+02 0.0094 25.0 7.6 38 174-213 241-278 (372)
55 KOG2325 Predicted transporter/ 22.1 3.3E+02 0.0071 26.9 7.2 159 4-163 64-239 (488)
56 PF01102 Glycophorin_A: Glycop 20.9 1.4E+02 0.0031 23.7 3.7 25 5-29 63-87 (122)
57 cd08764 Cyt_b561_CG1275_like N 20.8 3.2E+02 0.0069 23.8 6.2 28 194-221 175-203 (214)
58 PF06570 DUF1129: Protein of u 20.4 4.1E+02 0.009 22.5 6.8 48 171-218 151-202 (206)
No 1
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=100.00 E-value=3.7e-45 Score=319.25 Aligned_cols=227 Identities=48% Similarity=0.865 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHhhccC-CceeeeehhhHHHHHHHH
Q 042377 7 HQLAFIFGLLGNIVSFLVFLAPVPTFLIIYKKKSSEGYHSIPYVIALSSATLLLYYGLLKS-NAVLIITINSIGCVIEVI 85 (255)
Q Consensus 7 ~~~~~i~g~l~~i~ti~~~~Splp~i~~I~k~ks~~~~s~~p~~~~~~n~~~W~~YG~l~~-d~~~i~~~N~~G~~l~~~ 85 (255)
+....++|.+|.++++++|++|+|+++||+||||+|+.|+.||+++++||.+|+.||.+++ |. .++..|.+|+.+..+
T Consensus 3 ~~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~-llitIN~~G~~ie~~ 81 (243)
T KOG1623|consen 3 NVLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDY-LLITINGIGLVIETV 81 (243)
T ss_pred chHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCce-EEEEEehhcHHHHHH
Confidence 3456889999999999999999999999999999999999999999999999999999888 65 489999999999999
Q ss_pred HHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHhhhhheecC-CceeeeechhhhHHHHHHhhhhhhhhhhhhccCcccc
Q 042377 86 YLMLYLIYAPQKQKSFTIKLILVFNVGAFALMMVIVNFFVKG-PNRVTAVGCVCAVYNVAVFSAPLSIMRRVIKTKSVEY 164 (255)
Q Consensus 86 y~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~lG~ia~~~~i~~~~sPl~~i~~vir~kst~~ 164 (255)
|+..|+.|+++|+....... ..++.+++..+.++...++ +.+.+.+|.+|++++++||+|||..+++++|+||+|.
T Consensus 82 Yi~~f~~ya~~k~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~ 158 (243)
T KOG1623|consen 82 YISIFLYYAPKKKTVKIVLA---LVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEY 158 (243)
T ss_pred HHHHHheecCchheeEeeeh---HHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCceee
Confidence 99999999998873211111 1223344444455544454 4457899999999999999999999999999999999
Q ss_pred cchhHHHHHHHhhHHHhhhhccccCeeEEehhhHHHHHHHHhhhheEEEeCCCCCCCchhhhhhcccccccCcc
Q 042377 165 MPFSLSFFLTLCATMWFFYGLFVKDMVIALPNVLGFLFGIAQMILYLVYKGKKGNESNQKQQECTEMKMNLTED 238 (255)
Q Consensus 165 l~~~~~~~~~~~~~~W~~YG~l~~d~~I~~~N~~G~~l~~~ql~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (255)
||++++++.++++..|++||++.+|.+|.+||.+|+.++++|+.+|++||+++.+ ....++.+.+++.|.++.
T Consensus 159 mPf~Ls~a~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~~QL~Ly~~y~~~~~~-~~~~~~~~~~~~~~~~~~ 231 (243)
T KOG1623|consen 159 MPFPLSFALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGLIQLILYFKYPKTTEK-IVPPKQNKKDVVVDEVLL 231 (243)
T ss_pred echHHHHHHHHHHHHHHHHHHHhcCeEEEcccHHHHHHHHHHHHHhhhcCCCccc-ccccccccCCcccccccc
Confidence 9999999999999999999999999999999999999999999999999987732 223344555555544443
No 2
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.85 E-value=7e-22 Score=148.28 Aligned_cols=86 Identities=33% Similarity=0.648 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHhhccCCceeeeehhhHHHHHHHHHHHHHH
Q 042377 12 IFGLLGNIVSFLVFLAPVPTFLIIYKKKSSEGYHSIPYVIALSSATLLLYYGLLKSNAVLIITINSIGCVIEVIYLMLYL 91 (255)
Q Consensus 12 i~g~l~~i~ti~~~~Splp~i~~I~k~ks~~~~s~~p~~~~~~n~~~W~~YG~l~~d~~~i~~~N~~G~~l~~~y~~~~~ 91 (255)
++|++|.++++++++||+|+++|++|+||+|++|+.|+++.++||++|+.||++++|+ +++.+|++|.+++.+|+.+|+
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~-~i~~~N~~g~~~~~~~~~~~~ 80 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDW-PIIVPNVFGLVLSIIYLVVYY 80 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCe-eEEeeHHHHHHHHHHHHhheE
Confidence 4689999999999999999999999999999999999999999999999999999998 499999999999999999999
Q ss_pred HhcCcch
Q 042377 92 IYAPQKQ 98 (255)
Q Consensus 92 ~y~~~~~ 98 (255)
+|+++|+
T Consensus 81 ~y~~~~~ 87 (87)
T PF03083_consen 81 IYPSKKK 87 (87)
T ss_pred EeCCCCC
Confidence 9999875
No 3
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.85 E-value=1.7e-21 Score=146.23 Aligned_cols=87 Identities=31% Similarity=0.673 Sum_probs=84.5
Q ss_pred eeechhhhHHHHHHhhhhhhhhhhhhccCcccccchhHHHHHHHhhHHHhhhhccccCeeEEehhhHHHHHHHHhhhheE
Q 042377 132 TAVGCVCAVYNVAVFSAPLSIMRRVIKTKSVEYMPFSLSFFLTLCATMWFFYGLFVKDMVIALPNVLGFLFGIAQMILYL 211 (255)
Q Consensus 132 ~~lG~ia~~~~i~~~~sPl~~i~~vir~kst~~l~~~~~~~~~~~~~~W~~YG~l~~d~~I~~~N~~G~~l~~~ql~l~~ 211 (255)
+++|.+|.+.++++++||++++++++|+|+++++|+.++++.++||.+|+.||++.+|++++.+|++|++++.+|+.+|+
T Consensus 1 ~~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~g~~~~~~~~~~~~ 80 (87)
T PF03083_consen 1 QVLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDWPIIVPNVFGLVLSIIYLVVYY 80 (87)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCeeEEeeHHHHHHHHHHHHhheE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCC
Q 042377 212 VYKGKKG 218 (255)
Q Consensus 212 ~y~~~~~ 218 (255)
+|+++|+
T Consensus 81 ~y~~~~~ 87 (87)
T PF03083_consen 81 IYPSKKK 87 (87)
T ss_pred EeCCCCC
Confidence 9999875
No 4
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.46 E-value=4.5e-14 Score=123.99 Aligned_cols=92 Identities=25% Similarity=0.366 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHhhccCCceeeeehhhHHHHHHHHH
Q 042377 7 HQLAFIFGLLGNIVSFLVFLAPVPTFLIIYKKKSSEGYHSIPYVIALSSATLLLYYGLLKSNAVLIITINSIGCVIEVIY 86 (255)
Q Consensus 7 ~~~~~i~g~l~~i~ti~~~~Splp~i~~I~k~ks~~~~s~~p~~~~~~n~~~W~~YG~l~~d~~~i~~~N~~G~~l~~~y 86 (255)
+.....+|++|.+++++||.||+-.+++++|+||++.+++...++.++++..|+.||++.+|.+ |.++|.+|..+++.+
T Consensus 122 ~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGlli~D~~-IaipN~iG~~l~~~Q 200 (243)
T KOG1623|consen 122 ERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYGLLIKDFF-IAIPNVLGFLLGLIQ 200 (243)
T ss_pred ceeeeeeehhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHHHHhcCeE-EEcccHHHHHHHHHH
Confidence 3445688999999999999999999999999999999999999999999999999999999988 889999999999999
Q ss_pred HHHHHHhcCcchh
Q 042377 87 LMLYLIYAPQKQK 99 (255)
Q Consensus 87 ~~~~~~y~~~~~~ 99 (255)
+.+|++|.+++.+
T Consensus 201 L~Ly~~y~~~~~~ 213 (243)
T KOG1623|consen 201 LILYFKYPKTTEK 213 (243)
T ss_pred HHHhhhcCCCccc
Confidence 9999999876633
No 5
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=4e-12 Score=94.09 Aligned_cols=83 Identities=20% Similarity=0.570 Sum_probs=76.2
Q ss_pred eeeechhhhHHHHHHhhhhhhhhhhhhccCcccccchhHHHHHHHhhHHHhhhhccccCeeEEehhhHHHHHHHHhhhhe
Q 042377 131 VTAVGCVCAVYNVAVFSAPLSIMRRVIKTKSVEYMPFSLSFFLTLCATMWFFYGLFVKDMVIALPNVLGFLFGIAQMILY 210 (255)
Q Consensus 131 ~~~lG~ia~~~~i~~~~sPl~~i~~vir~kst~~l~~~~~~~~~~~~~~W~~YG~l~~d~~I~~~N~~G~~l~~~ql~l~ 210 (255)
.+.+|.+|+.++.++| +||..+++|+||++++++.++......+.+|++||++++|.++...|.+++.++++-+...
T Consensus 5 ~~viG~ia~ilttf~f---lPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~lPii~aN~i~~il~liIl~~k 81 (89)
T COG4095 5 IEVIGTIAGILTTFAF---LPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILINDLPIIIANIISFILSLIILFYK 81 (89)
T ss_pred hhhHHHHHHHHHHHHH---HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHHH
Confidence 4668999999998888 8899999999999999999999999999999999999999999999999999999988887
Q ss_pred EEEeCC
Q 042377 211 LVYKGK 216 (255)
Q Consensus 211 ~~y~~~ 216 (255)
..|..+
T Consensus 82 I~~~~k 87 (89)
T COG4095 82 IKYILK 87 (89)
T ss_pred HHHHHh
Confidence 766543
No 6
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=7.2e-11 Score=87.46 Aligned_cols=81 Identities=25% Similarity=0.393 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHhhccCCceeeeehhhHHHHHHHHHHHH
Q 042377 10 AFIFGLLGNIVSFLVFLAPVPTFLIIYKKKSSEGYHSIPYVIALSSATLLLYYGLLKSNAVLIITINSIGCVIEVIYLML 89 (255)
Q Consensus 10 ~~i~g~l~~i~ti~~~~Splp~i~~I~k~ks~~~~s~~p~~~~~~n~~~W~~YG~l~~d~~~i~~~N~~G~~l~~~y~~~ 89 (255)
.++.|..|. +..-++-+||..++.|+|+++++|+.+|+.....+++|+.||++.+| .|+...|.++..++..-++.
T Consensus 5 ~~viG~ia~---ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~-lPii~aN~i~~il~liIl~~ 80 (89)
T COG4095 5 IEVIGTIAG---ILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILIND-LPIIIANIISFILSLIILFY 80 (89)
T ss_pred hhhHHHHHH---HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHcc-CcchhHHHHHHHHHHHHHHH
Confidence 444555544 44555689999999999999999999999999999999999999998 48999999999999888777
Q ss_pred HHHhc
Q 042377 90 YLIYA 94 (255)
Q Consensus 90 ~~~y~ 94 (255)
-.+|.
T Consensus 81 kI~~~ 85 (89)
T COG4095 81 KIKYI 85 (89)
T ss_pred HHHHH
Confidence 77663
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=99.15 E-value=1.4e-09 Score=95.15 Aligned_cols=201 Identities=14% Similarity=0.065 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHH--------hhccCCcee--eeehhhHH--
Q 042377 12 IFGLLGNIVSFLVFLAPVPTFLIIYKKKSSEGYHSIPYVIALSSATLLLYY--------GLLKSNAVL--IITINSIG-- 79 (255)
Q Consensus 12 i~g~l~~i~ti~~~~Splp~i~~I~k~ks~~~~s~~p~~~~~~n~~~W~~Y--------G~l~~d~~~--i~~~N~~G-- 79 (255)
+...+|.+..++-.++.+||+.++.|+||++++|+..+.....+...|..| ....+-++. -+..|-+-
T Consensus 3 iS~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~~~v~~edl~~a 82 (220)
T TIGR00951 3 LSQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSSPGVTQNDVFFT 82 (220)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccCCCcHHHHHHH
Confidence 345677777777778899999999999999999999999999999999999 333222221 01112222
Q ss_pred ---HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHhhhhheecCCceeeeechhhhHHHHHHhhhhhhhhhhh
Q 042377 80 ---CVIEVIYLMLYLIYAPQKQKSFTIKLILVFNVGAFALMMVIVNFFVKGPNRVTAVGCVCAVYNVAVFSAPLSIMRRV 156 (255)
Q Consensus 80 ---~~l~~~y~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lG~ia~~~~i~~~~sPl~~i~~v 156 (255)
+++.+....-+.+|.+..++.......... ...++...........+....+.+..+..+--.....+-+||++..
T Consensus 83 i~~~il~~l~~~q~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~l~~iki~is~ikyiPQi~~N 161 (220)
T TIGR00951 83 LHAILICFIVLHQCGDYERGWQRVSNPWILRIL-VALLACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKYFPQAATN 161 (220)
T ss_pred HHHHHHHHHHHHHHhhccccccccchhHHHHHH-HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 222222222223333332222111110000 0011111111111111222234444444444455556779999999
Q ss_pred hccCcccccchhHHHHHHHhhHHHhhhhccc-cCeeEEehhhHHHHHHHHhhhheEEE
Q 042377 157 IKTKSVEYMPFSLSFFLTLCATMWFFYGLFV-KDMVIALPNVLGFLFGIAQMILYLVY 213 (255)
Q Consensus 157 ir~kst~~l~~~~~~~~~~~~~~W~~YG~l~-~d~~I~~~N~~G~~l~~~ql~l~~~y 213 (255)
+|+||++++|....+..+.+++..++-.... +|...+..-.+++.++.+.+...+.|
T Consensus 162 y~~ksT~glSi~~i~Ld~~G~lqri~ts~~~~gd~~~l~~~~~s~~~n~i~~~Q~~~y 219 (220)
T TIGR00951 162 YHNKSTGQLSIITVFLDFTGLLQRIFQSVNETGDPLKAGLFVVSSLFNGLFAAQVFFY 219 (220)
T ss_pred HhcCCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998888888754 68888888999999999877766555
No 8
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=98.79 E-value=2.2e-08 Score=85.52 Aligned_cols=195 Identities=14% Similarity=0.124 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHhhccCCceeeeehhhHHHHHH-HHHHHHH
Q 042377 12 IFGLLGNIVSFLVFLAPVPTFLIIYKKKSSEGYHSIPYVIALSSATLLLYYGLLKSNAVLIITINSIGCVIE-VIYLMLY 90 (255)
Q Consensus 12 i~g~l~~i~ti~~~~Splp~i~~I~k~ks~~~~s~~p~~~~~~n~~~W~~YG~l~~d~~~i~~~N~~G~~l~-~~y~~~~ 90 (255)
+.+.+|..+......-.+||+.+|+..||++++|...+...+++...-+.|.+..+-+| .-.--.+=++++ .+.+.+.
T Consensus 30 lsklLg~~~va~sl~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~~g~pF-ss~gE~~fLl~Q~vili~~i 108 (230)
T KOG3211|consen 30 LSKLLGLSTVAGSLLVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYTSGYPF-SSYGEYPFLLLQAVILILCI 108 (230)
T ss_pred HHhhhhHHHHHHHHHhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehhhcCCCc-hhHHHHHHHHHHHHHHHHHH
Confidence 45667777776666779999999999999999999999999999999999998887665 222222223333 3344445
Q ss_pred HHhcCcchhHHHHHHHHHHHHHHHHHHHhhhhheecCCceeeeechhhhHHHHHHhhhhhhhhhhhhccCcccccchhHH
Q 042377 91 LIYAPQKQKSFTIKLILVFNVGAFALMMVIVNFFVKGPNRVTAVGCVCAVYNVAVFSAPLSIMRRVIKTKSVEYMPFSLS 170 (255)
Q Consensus 91 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lG~ia~~~~i~~~~sPl~~i~~vir~kst~~l~~~~~ 170 (255)
++|+-..... .....+ + +.....++. ..+...++-...+...-+.-.+.+.|+...+|+|+++.+++..+
T Consensus 109 f~f~~~~~~~--v~~l~~--~-~~v~~~~~s-----k~~p~~~~~L~~~~~l~i~v~sr~~Qi~~n~~~~~tgqls~it~ 178 (230)
T KOG3211|consen 109 FHFSGQTVTV--VQFLGY--I-ALVVSVLAS-----KALPLWIITLAQNLCLPIVVVSRLLQIQCNYHNRSTGQLSLITV 178 (230)
T ss_pred HHhccceeeh--hhHHHH--H-HHHHHHHHH-----hhhhHHHHHHHHhcCchhhhHHHHHHHHHHhcccccchhHHHHH
Confidence 5554221111 111111 0 011111111 11111222222222222344788999999999999999999999
Q ss_pred HHHHHhhHHHhhhhccc-cCeeEEehhhHHHHHHHHhhhheEEEeCCC
Q 042377 171 FFLTLCATMWFFYGLFV-KDMVIALPNVLGFLFGIAQMILYLVYKGKK 217 (255)
Q Consensus 171 ~~~~~~~~~W~~YG~l~-~d~~I~~~N~~G~~l~~~ql~l~~~y~~~~ 217 (255)
+.++-.|+..++|.+.. +|.-++..-++.+.++..-.+..++|++++
T Consensus 179 fLsf~g~lARiftsiq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~~ 226 (230)
T KOG3211|consen 179 FLSFGGCLARIFTSIQETGDFLMLLRFVISLALNGLITAQVLRYWSTA 226 (230)
T ss_pred HHHhhhHHHHHHHHHHhcCChhhHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence 99999999999999995 688888889999999988887777777644
No 9
>PF04193 PQ-loop: PQ loop repeat
Probab=98.30 E-value=1.9e-06 Score=59.98 Aligned_cols=56 Identities=25% Similarity=0.390 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHhhccCCce
Q 042377 15 LLGNIVSFLVFLAPVPTFLIIYKKKSSEGYHSIPYVIALSSATLLLYYGLLKSNAV 70 (255)
Q Consensus 15 ~l~~i~ti~~~~Splp~i~~I~k~ks~~~~s~~p~~~~~~n~~~W~~YG~l~~d~~ 70 (255)
.+|.+..++..++.+||+++.+|+||++++|...+.....+..+|+.|.+..++++
T Consensus 4 ~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~~ 59 (61)
T PF04193_consen 4 ILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYPF 59 (61)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45666667777789999999999999999999999999999999999999887653
No 10
>PF04193 PQ-loop: PQ loop repeat
Probab=97.75 E-value=4e-05 Score=53.24 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=43.1
Q ss_pred HHHHhhhhhhhhhhhhccCcccccchhHHHHHHHhhHHHhhhhccccCe
Q 042377 142 NVAVFSAPLSIMRRVIKTKSVEYMPFSLSFFLTLCATMWFFYGLFVKDM 190 (255)
Q Consensus 142 ~i~~~~sPl~~i~~vir~kst~~l~~~~~~~~~~~~~~W~~YG~l~~d~ 190 (255)
.++...+.+||+.+.+|+|+++++|+.+....+.++.+|+.|.+..++.
T Consensus 10 ~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~ 58 (61)
T PF04193_consen 10 IVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYP 58 (61)
T ss_pred HHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3445566699999999999999999999999999999999999987654
No 11
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=97.50 E-value=0.0013 Score=59.07 Aligned_cols=203 Identities=15% Similarity=0.183 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHhhccCCceeeeehhhHHHHHHHHHHHHH
Q 042377 11 FIFGLLGNIVSFLVFLAPVPTFLIIYKKKSSEGYHSIPYVIALSSATLLLYYGLLKSNAVLIITINSIGCVIEVIYLMLY 90 (255)
Q Consensus 11 ~i~g~l~~i~ti~~~~Splp~i~~I~k~ks~~~~s~~p~~~~~~n~~~W~~YG~l~~d~~~i~~~N~~G~~l~~~y~~~~ 90 (255)
+....+|.+.+++-..+-.||+....|+|+.+++|+.+.+.-......=+.|..+.+-- |+...-.+=..++-..+...
T Consensus 7 ~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~~~-~~~~~~~~yy~~~d~~l~~q 85 (260)
T KOG2913|consen 7 TLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQPLG-STLKVQAVYYTLADSVLFVQ 85 (260)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHH
Confidence 44556677777777788999999999999999999999999888888888888777542 11111111111111112222
Q ss_pred HHhcCcchh---------HHHH-H---HHHHH--------------HHHHH-HHHHhhhh-heec------CC-ceeeee
Q 042377 91 LIYAPQKQK---------SFTI-K---LILVF--------------NVGAF-ALMMVIVN-FFVK------GP-NRVTAV 134 (255)
Q Consensus 91 ~~y~~~~~~---------~~~~-~---~~~~~--------------~~~~~-~~~~l~~~-~~~~------~~-~~~~~l 134 (255)
..|.+++.+ .+.. . ..... ...++ ..+..... .... .. ...+.+
T Consensus 86 ~~yy~~~~~~~pll~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 165 (260)
T KOG2913|consen 86 CLYYGNIYPREPLLPVPSFRSLLGGLEALLILSIKLFSPRFVKWPVVALGFLAIVFLICGAAYESLLRAVRVNGLEIDSL 165 (260)
T ss_pred HHhcchhcccCccccccchhhhhcchHHHHHHHhhccCcchhhccchhhhhHHHHHHHHHHHhhccccccccchhhhcch
Confidence 222222111 0000 0 00000 00000 00001110 0000 11 233456
Q ss_pred chhhhHHH-HHHhhhhhhhhhhhhccCcccccchhHHHHHHHhhHHHhhhhcc---ccCeeEEehhhHHHHHHHHhhhhe
Q 042377 135 GCVCAVYN-VAVFSAPLSIMRRVIKTKSVEYMPFSLSFFLTLCATMWFFYGLF---VKDMVIALPNVLGFLFGIAQMILY 210 (255)
Q Consensus 135 G~ia~~~~-i~~~~sPl~~i~~vir~kst~~l~~~~~~~~~~~~~~W~~YG~l---~~d~~I~~~N~~G~~l~~~ql~l~ 210 (255)
|.+.+.++ .+-.++++||+...+|.|+++++++.++.....++ ..|+.- ..+.+=..--.-...+-+..+..+
T Consensus 166 g~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n---~~y~~s~~~~~n~~w~~~~~~~~~~D~~~~~q~ 242 (260)
T KOG2913|consen 166 GAILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGN---TTYILSSYLVTNLPWLVDSKGTIYLDIFIFLQF 242 (260)
T ss_pred HHHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHHHccc---cccccccccccCCcccccCCcchhHHHHHHHHH
Confidence 66555444 45559999999999999999999997555555444 466654 222222222333455666667777
Q ss_pred EEEeCCC
Q 042377 211 LVYKGKK 217 (255)
Q Consensus 211 ~~y~~~~ 217 (255)
+.|++.|
T Consensus 243 ~~~~~~~ 249 (260)
T KOG2913|consen 243 FNYRASK 249 (260)
T ss_pred HHhhccc
Confidence 7777655
No 12
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=95.41 E-value=0.015 Score=34.85 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=23.8
Q ss_pred hcHHHHHHHHHhcCCCCccchHHHHHHH
Q 042377 27 APVPTFLIIYKKKSSEGYHSIPYVIALS 54 (255)
Q Consensus 27 Splp~i~~I~k~ks~~~~s~~p~~~~~~ 54 (255)
+-+||+.+++|+||++++|+..+...+.
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~~ 29 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWLL 29 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHHh
Confidence 5789999999999999999877765543
No 13
>PHA02246 hypothetical protein
Probab=94.65 E-value=1.4 Score=36.68 Aligned_cols=170 Identities=16% Similarity=0.177 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhcHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHhhccCCc--eeeeehhhHHHHHHHHHHHHHHHhc
Q 042377 17 GNIVSFLVFLAPVPTFLIIYKKKSSEGYHSIPYVIALSSATLLLYYGLLKSNA--VLIITINSIGCVIEVIYLMLYLIYA 94 (255)
Q Consensus 17 ~~i~ti~~~~Splp~i~~I~k~ks~~~~s~~p~~~~~~n~~~W~~YG~l~~d~--~~i~~~N~~G~~l~~~y~~~~~~y~ 94 (255)
...-+++......|++..+.|.|+++++| -.|+-...-..+-..|.++..+. |.++. =..-..++++++.+- .|
T Consensus 9 s~~yailit~gYipgL~slvk~~nv~GvS-~~FWYLi~~tvgiSfyNlL~T~~~~fqi~s-vg~nl~lgivcLlv~-~~- 84 (192)
T PHA02246 9 SILYAILITVGYIPGLVALVKAESVKGVS-NYFWYLIVATVGISFYNLLLTDASVFQIVS-VGLNLTLGIVCLLVA-SY- 84 (192)
T ss_pred HHHHHHHHHhhhhhhHHHHhhhcccccHH-HHHHHHHHHHHHHHHHHHHhcCCceEEEee-eehhhhhhhhheeee-hh-
Confidence 33344455556899999999999999988 45666666667777888765442 43332 222333344333222 22
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhhhheecCCceeeeechhhhHHHHHHhhhhhhhhhhhhccCcccccchhHHHHHH
Q 042377 95 PQKQKSFTIKLILVFNVGAFALMMVIVNFFVKGPNRVTAVGCVCAVYNVAVFSAPLSIMRRVIKTKSVEYMPFSLSFFLT 174 (255)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lG~ia~~~~i~~~~sPl~~i~~vir~kst~~l~~~~~~~~~ 174 (255)
|+|........ .++.+. +..+. +..+..+.+ .++...++..+|+.+-+|+|++|+.+...++...
T Consensus 85 rkkd~f~~~fi----iifSLl----lfll~-~~~evtQtV------at~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~ 149 (192)
T PHA02246 85 RKKDYFSIPFI----IVFSLL----LFLLS-DFTALTQTV------ATITIILAYVTQITTFYKTKSAEGTNRFLFLIIG 149 (192)
T ss_pred hccccccchHH----HHHHHH----HHHHh-hhHHHHHHH------HHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHH
Confidence 22222111111 011111 11110 001111112 2223344567899999999999998877654433
Q ss_pred HhhHHHhhhhcccc--CeeEEeh---hhHHHHHHHHh
Q 042377 175 LCATMWFFYGLFVK--DMVIALP---NVLGFLFGIAQ 206 (255)
Q Consensus 175 ~~~~~W~~YG~l~~--d~~I~~~---N~~G~~l~~~q 206 (255)
.+ +.-+....... ..+|+++ |.+=+..+..|
T Consensus 150 ~G-L~~L~~~m~Lthv~~hIiiTEf~N~iLiLiCy~q 185 (192)
T PHA02246 150 LG-LASLIVSMVLTHTYVHIIATEFVNFVLILICYLQ 185 (192)
T ss_pred HH-HHHHHHHHhhhCCcceeeHHHHHHHHHHHHHHHH
Confidence 33 22334444433 4566665 44444444333
No 14
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=94.61 E-value=0.47 Score=47.45 Aligned_cols=186 Identities=17% Similarity=0.165 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHhcCCCCccchHHH-HHHHHHHHHHHHhhccCCceeeeehhhHHHHHHHHHHHHHHHhc
Q 042377 16 LGNIVSFLVFLAPVPTFLIIYKKKSSEGYHSIPYV-IALSSATLLLYYGLLKSNAVLIITINSIGCVIEVIYLMLYLIYA 94 (255)
Q Consensus 16 l~~i~ti~~~~Splp~i~~I~k~ks~~~~s~~p~~-~~~~n~~~W~~YG~l~~d~~~i~~~N~~G~~l~~~y~~~~~~y~ 94 (255)
+|.+..+....--+-|...--|+| +.+-|.-|+ ..+.++.+=++||+..+|. |++....+|.++..=-+ +.-.
T Consensus 13 ~G~~~q~~F~~rf~~QW~~sek~~--~s~~p~~FW~~Sl~g~~~l~~y~~~~~~~-~~~~~q~~~~~iy~rNl---~l~~ 86 (608)
T PRK01021 13 LGLFANLFFGSAFCIQWFLSKKRK--YSYVPKIFWILSSIGAVLMICHGFIQSQF-PIALLHSFNLIIYFRNL---NIAS 86 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC--CccCchHHHHHHHHHHHHHHHHHHHhcCC-cEEEecccceEEEeehh---hhcc
Confidence 333334433233344444433333 345556664 7789999999999888764 46665666655421111 1111
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHH-hhhhheecCC-------------cee---eeechhhhHHHHHHhhhhhhhhhhhh
Q 042377 95 PQKQKSFTIKLILVFNVGAFALMM-VIVNFFVKGP-------------NRV---TAVGCVCAVYNVAVFSAPLSIMRRVI 157 (255)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~-------------~~~---~~lG~ia~~~~i~~~~sPl~~i~~vi 157 (255)
+.+...+.....+..++..+++=+ +.++++.+.+ +.. .++|.+|.++-..-| -.=|-.-
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~f~~Rf----~~Qw~~s 162 (608)
T PRK01021 87 SRPLSVSKTLSLLVLSATAITLPFAIGTRYYPNMTWMASPNIFHLPLPPANLSWHLIGCIGLTIFSLRF----FIQWFYL 162 (608)
T ss_pred cccchHHHHHHHHHhhhHhhhhHHHHHHHHhcCcchhhhHHHhhCCCcchhHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 111111111111111111111101 1222222221 111 245665554333323 1112223
Q ss_pred ccCcccccchhHHHHHHHhhHHHhhhhccccCeeEEehhhHHHHHHHHhhhheE
Q 042377 158 KTKSVEYMPFSLSFFLTLCATMWFFYGLFVKDMVIALPNVLGFLFGIAQMILYL 211 (255)
Q Consensus 158 r~kst~~l~~~~~~~~~~~~~~W~~YG~l~~d~~I~~~N~~G~~l~~~ql~l~~ 211 (255)
+++..+.+|......+++++++=+.|++.++|+..++...+|++..+-.+.+..
T Consensus 163 e~~~~s~~p~~FW~~s~~G~~~~l~Y~i~r~dpv~i~g~~~g~~~y~rnl~li~ 216 (608)
T PRK01021 163 EYNNQSALPALFWKASLLGGSLALLYFIRTGDPVNILCYGCGLFPSLANLRIAY 216 (608)
T ss_pred HhcCCCCCcHHHHHHHHHhHHHHHHHHHHhCCceEEEccccchhHHHHHHHHHH
Confidence 344445688888899999999999999999999999999999998887765433
No 15
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=93.30 E-value=0.49 Score=41.41 Aligned_cols=81 Identities=10% Similarity=0.193 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHhh-ccCCceeeeehhhHHHHHHHHHHHHH
Q 042377 12 IFGLLGNIVSFLVFLAPVPTFLIIYKKKSSEGYHSIPYVIALSSATLLLYYGL-LKSNAVLIITINSIGCVIEVIYLMLY 90 (255)
Q Consensus 12 i~g~l~~i~ti~~~~Splp~i~~I~k~ks~~~~s~~p~~~~~~n~~~W~~YG~-l~~d~~~i~~~N~~G~~l~~~y~~~~ 90 (255)
.+..++.+--.....+.+||++.-.|+|||++.|......-+.+++-=+.-.. -.+|+. .+....++..++.+++.-.
T Consensus 138 ~l~~l~~iki~is~ikyiPQi~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts~~~~gd~~-~l~~~~~s~~~n~i~~~Q~ 216 (220)
T TIGR00951 138 FVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLSIITVFLDFTGLLQRIFQSVNETGDPL-KAGLFVVSSLFNGLFAAQV 216 (220)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHHH
Confidence 33344444445555689999999999999999999998877777444333333 234554 5667777777777776665
Q ss_pred HHh
Q 042377 91 LIY 93 (255)
Q Consensus 91 ~~y 93 (255)
+.|
T Consensus 217 ~~y 219 (220)
T TIGR00951 217 FFY 219 (220)
T ss_pred hhc
Confidence 554
No 16
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=92.98 E-value=1.2 Score=37.18 Aligned_cols=127 Identities=9% Similarity=0.166 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHhhccCCceeeeehhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHhhhhheecC
Q 042377 48 PYVIALSSATLLLYYGLLKSNAVLIITINSIGCVIEVIYLMLYLIYAPQKQKSFTIKLILVFNVGAFALMMVIVNFFVKG 127 (255)
Q Consensus 48 p~~~~~~n~~~W~~YG~l~~d~~~i~~~N~~G~~l~~~y~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 127 (255)
........|+++..+-.+.+.+. -+.+..++..-..+..++.+ +. ...... ++.. ..... +-
T Consensus 28 l~~~~~~~~~~~~ihf~LLGa~t-----aa~~~~ls~~R~~~s~~~~~---~~--v~~~Fi----~~~~--~~~~~--~~ 89 (163)
T PF10688_consen 28 LLLLQAISCLLFAIHFALLGAWT-----AALSMLLSAVRNFVSIRTRS---RW--VMAVFI----ALSL--VMGLF--TW 89 (163)
T ss_pred HHHHHHHHHHHHHHHHHHhChHH-----HHHHHHHHHHHHHHHHHhCC---HH--HHHHHH----HHHH--HHHHH--HH
Confidence 34566778888888888887764 44556666666666555543 21 111111 1111 11111 12
Q ss_pred CceeeeechhhhHHHHHHhhhhhhhhhhhhccCcccccchhHHHHHHHhhHHHhhhhccccCeeEEehhhHHHHHHHHhh
Q 042377 128 PNRVTAVGCVCAVYNVAVFSAPLSIMRRVIKTKSVEYMPFSLSFFLTLCATMWFFYGLFVKDMVIALPNVLGFLFGIAQM 207 (255)
Q Consensus 128 ~~~~~~lG~ia~~~~i~~~~sPl~~i~~vir~kst~~l~~~~~~~~~~~~~~W~~YG~l~~d~~I~~~N~~G~~l~~~ql 207 (255)
+...+.++.+|++...... ..+ +++.. =...++++.+|..|+++.++++...-|...++.+.+.+
T Consensus 90 ~g~~~~l~~~as~~~t~a~----------f~~---~~~~m--R~~~l~~~~~w~~~n~~igS~~g~l~e~~~~~~n~~~i 154 (163)
T PF10688_consen 90 QGWIELLPYAASVLGTIAL----------FML---DGIKM--RILMLVGTLCWLIYNILIGSWGGTLMEALFIISNLITI 154 (163)
T ss_pred hhHHHHHHHHHHHHHHHHH----------Hhc---CchhH--HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 3444667776666553222 111 22222 23588999999999999999999999998888887664
No 17
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=92.86 E-value=0.073 Score=31.79 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=22.7
Q ss_pred hhhhhhhhhhccCcccccchhHHHHHHH
Q 042377 148 APLSIMRRVIKTKSVEYMPFSLSFFLTL 175 (255)
Q Consensus 148 sPl~~i~~vir~kst~~l~~~~~~~~~~ 175 (255)
+-+||+.+++|+|+++++|+.+.+..+.
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~~ 29 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWLL 29 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHHh
Confidence 4578999999999999999876665443
No 18
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=92.52 E-value=0.033 Score=44.07 Aligned_cols=81 Identities=16% Similarity=0.176 Sum_probs=61.8
Q ss_pred hhhhHHHHHHhhhhhhhhhhhhccCcccccchhHHHHHHHhhHHHhhhhccc--cCeeEEehhhHHHHHHHHhhhheEEE
Q 042377 136 CVCAVYNVAVFSAPLSIMRRVIKTKSVEYMPFSLSFFLTLCATMWFFYGLFV--KDMVIALPNVLGFLFGIAQMILYLVY 213 (255)
Q Consensus 136 ~ia~~~~i~~~~sPl~~i~~vir~kst~~l~~~~~~~~~~~~~~W~~YG~l~--~d~~I~~~N~~G~~l~~~ql~l~~~y 213 (255)
+.|.++.=.+-++++.++ +|..|.+|..+..+.++.+++|.-|++.+ +|+.++..|++-...++.|+.=++.|
T Consensus 21 FWaP~~kWgl~iA~i~D~-----~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y 95 (119)
T PF03650_consen 21 FWAPVAKWGLPIAGIADM-----KRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNATTQLYQLYRKLNY 95 (119)
T ss_pred eehhheeheeeeeehhhc-----CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334343333334455444 57999999999999999999999999997 57888888999999999999888877
Q ss_pred eCCCCCCC
Q 042377 214 KGKKGNES 221 (255)
Q Consensus 214 ~~~~~~~~ 221 (255)
...++...
T Consensus 96 ~~~~~~~~ 103 (119)
T PF03650_consen 96 QYSQKKEA 103 (119)
T ss_pred HhhcCchh
Confidence 76544433
No 19
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.26 E-value=0.047 Score=42.35 Aligned_cols=66 Identities=21% Similarity=0.307 Sum_probs=55.8
Q ss_pred HHhhhhhhhhhhhhccCcccccchhHHHHHHHhhHHHhhhhccc--cCeeEEehhhHHHHHHHHhhhheEEEe
Q 042377 144 AVFSAPLSIMRRVIKTKSVEYMPFSLSFFLTLCATMWFFYGLFV--KDMVIALPNVLGFLFGIAQMILYLVYK 214 (255)
Q Consensus 144 ~~~~sPl~~i~~vir~kst~~l~~~~~~~~~~~~~~W~~YG~l~--~d~~I~~~N~~G~~l~~~ql~l~~~y~ 214 (255)
.+.++.+.++. |..|.+|.....+.+..++.|.-|++.+ +|+.++..|.+=.+.+++|+.=++.|.
T Consensus 33 glv~AglaD~a-----rP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~ 100 (118)
T KOG1589|consen 33 GLVIAGLADLA-----RPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAITGIYQLTRIANYQ 100 (118)
T ss_pred hheeecHHhhc-----CChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33446666664 4888899999999999999999999997 689999999999999999999888883
No 20
>PHA02246 hypothetical protein
Probab=89.11 E-value=4.3 Score=33.79 Aligned_cols=63 Identities=25% Similarity=0.319 Sum_probs=41.2
Q ss_pred HHHHHHHhcHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHhhccCCceeeeehhhHHHHH
Q 042377 20 VSFLVFLAPVPTFLIIYKKKSSEGYHSIPYVIALSSATLLLYYGLLKSNAVLIITINSIGCVI 82 (255)
Q Consensus 20 ~ti~~~~Splp~i~~I~k~ks~~~~s~~p~~~~~~n~~~W~~YG~l~~d~~~i~~~N~~G~~l 82 (255)
++....++.+||+.+-+|+|++|+.|+.-++....+-.+-..-=.+++-+.-++++-.+..++
T Consensus 116 at~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~Lthv~~hIiiTEf~N~iL 178 (192)
T PHA02246 116 ATITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVLTHTYVHIIATEFVNFVL 178 (192)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhhhCCcceeeHHHHHHHHH
Confidence 334445578999999999999999998888765554444333333454432266665555554
No 21
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.91 E-value=0.42 Score=37.17 Aligned_cols=65 Identities=12% Similarity=0.178 Sum_probs=55.4
Q ss_pred HHhcHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHhhccC--CceeeeehhhHHHHHHHHHHHHHHHhcC
Q 042377 25 FLAPVPTFLIIYKKKSSEGYHSIPYVIALSSATLLLYYGLLKS--NAVLIITINSIGCVIEVIYLMLYLIYAP 95 (255)
Q Consensus 25 ~~Splp~i~~I~k~ks~~~~s~~p~~~~~~n~~~W~~YG~l~~--d~~~i~~~N~~G~~l~~~y~~~~~~y~~ 95 (255)
.++.+.++ +|.+|.+|.......+...+.|..|.+.+. |+. ++.+|.+=.+.+++++.=.+.|..
T Consensus 35 v~AglaD~-----arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~-LfsVN~f~~~tg~~QL~Ri~~y~~ 101 (118)
T KOG1589|consen 35 VIAGLADL-----ARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYS-LFSVNFFVAITGIYQLTRIANYQQ 101 (118)
T ss_pred eeecHHhh-----cCChHHcChhhhHHHHHhhhhheeeeEEEeccchh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556665 688999999999999999999999998763 666 899999999999999999998843
No 22
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=86.66 E-value=0.43 Score=37.81 Aligned_cols=60 Identities=17% Similarity=0.216 Sum_probs=52.2
Q ss_pred hcCCCCccchHHHHHHHHHHHHHHHhhccC--CceeeeehhhHHHHHHHHHHHHHHHhcCcch
Q 042377 38 KKSSEGYHSIPYVIALSSATLLLYYGLLKS--NAVLIITINSIGCVIEVIYLMLYLIYAPQKQ 98 (255)
Q Consensus 38 ~ks~~~~s~~p~~~~~~n~~~W~~YG~l~~--d~~~i~~~N~~G~~l~~~y~~~~~~y~~~~~ 98 (255)
+|..+.+|..+-.+.++-+.+|+.|.+.+. |+ .++.+|++-...+++++.=++.|...++
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny-~L~a~n~~~~~~q~~Ql~R~~~y~~~~~ 100 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSLVITPRNY-LLFACNFFNATTQLYQLYRKLNYQYSQK 100 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchH-HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 589999999999999999999999999774 55 4899999999999999988888865443
No 23
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=86.02 E-value=1.4 Score=40.27 Aligned_cols=211 Identities=10% Similarity=0.008 Sum_probs=102.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchHHHHH--------HHHHH---HHHHHhhc-cCC---c
Q 042377 5 TPHQLAFIFGLLGNIVSFLVFLAPVPTFLIIYKKKSSEGYHSIPYVIA--------LSSAT---LLLYYGLL-KSN---A 69 (255)
Q Consensus 5 ~~~~~~~i~g~l~~i~ti~~~~Splp~i~~I~k~ks~~~~s~~p~~~~--------~~n~~---~W~~YG~l-~~d---~ 69 (255)
++.+....-.++|.+--+.=-.|-.||+.-=.|+||+.++|+--...- ..|++ +|-+-+-. +.+ .
T Consensus 116 ~S~~l~il~~IvGwvYf~aWSISfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~ly~~~~iq~~y~~~~p~g~ 195 (372)
T KOG3145|consen 116 RSIALVILDQIVGWVYFVAWSISFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLLYYCPKIQNQYDTSYPLGV 195 (372)
T ss_pred ehhhHHHHHhhhheeEEEEEeeeechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHHHHhcHHhccceeccCCCCC
Confidence 344555556666766555556688999999999999999986433221 22222 12111110 111 1
Q ss_pred eeeeehh-----hHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH-HHHHHHHHHhhhhheecCCc----eeeeechhhh
Q 042377 70 VLIITIN-----SIGCVIEVIYLMLYLIYAPQKQKSFTIKLILVF-NVGAFALMMVIVNFFVKGPN----RVTAVGCVCA 139 (255)
Q Consensus 70 ~~i~~~N-----~~G~~l~~~y~~~~~~y~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~----~~~~lG~ia~ 139 (255)
-|+ ..| .=|+++..+.+.-...|.|..++...-.+++.. ...+++.. .+......+. ....+.++=.
T Consensus 196 ~pv-~~nDv~fslHa~lmt~Iti~Qc~~yeR~~q~vs~~ialgil~i~~~f~~~--~~~va~~~~~~wL~f~~~~syiKl 272 (372)
T KOG3145|consen 196 PPV-TLNDVVFSLHAVLMTVITILQCFFYERGWQRVSKGIALGILAIFWLFAVV--FMYVAYWYVIRWLAFLNNLSYIKL 272 (372)
T ss_pred Ccc-chhhhhhhHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 122 223 335566677777777788776666432111111 11111111 1111100110 0112233333
Q ss_pred HHHHHHhhhhhhhhhhhhccCcccccchhHH----HHHHHhhHHHhhhhccccCeeEEeh-------hhHHHHHHHHhhh
Q 042377 140 VYNVAVFSAPLSIMRRVIKTKSVEYMPFSLS----FFLTLCATMWFFYGLFVKDMVIALP-------NVLGFLFGIAQMI 208 (255)
Q Consensus 140 ~~~i~~~~sPl~~i~~vir~kst~~l~~~~~----~~~~~~~~~W~~YG~l~~d~~I~~~-------N~~G~~l~~~ql~ 208 (255)
..+.+=| .||.....+.||+++-|..=. -.+.++-+.-++-..--+||--+.. ..+.+++.++.+.
T Consensus 273 ~mTliKY---iPQa~mN~tRKSt~gwsIgnIlLDfTGG~~slLQMilQ~~N~~sw~~f~gnp~KfGLg~vSi~FdiiFm~ 349 (372)
T KOG3145|consen 273 AMTLIKY---IPQAYMNFTRKSTVGWSIGNILLDFTGGTASLLQMILQSSNDNSWDTFYGNPGKFGLGLVSIFFDIIFMM 349 (372)
T ss_pred HHHHHHh---hhHHhhcceeccccccccccEEEEecccHHHHHHHHHHHhccccHHHHhcCchhhhhhhHHHHHHHHHHh
Confidence 3333333 667788899999986553211 1222332223333333344544444 4556666777766
Q ss_pred heEEEeCCCCCCC
Q 042377 209 LYLVYKGKKGNES 221 (255)
Q Consensus 209 l~~~y~~~~~~~~ 221 (255)
..+.+.++++...
T Consensus 350 QhyVly~~~~~~~ 362 (372)
T KOG3145|consen 350 QHYVLYPRGHVLK 362 (372)
T ss_pred hheeEeccccccC
Confidence 6666655555433
No 24
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=80.09 E-value=6.1 Score=34.42 Aligned_cols=73 Identities=11% Similarity=0.182 Sum_probs=58.8
Q ss_pred HHHHhcHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHhhccCCceeeeehhhHHHHHHHHHHHHHHHhcC
Q 042377 23 LVFLAPVPTFLIIYKKKSSEGYHSIPYVIALSSATLLLYYGLLKSNAVLIITINSIGCVIEVIYLMLYLIYAP 95 (255)
Q Consensus 23 ~~~~Splp~i~~I~k~ks~~~~s~~p~~~~~~n~~~W~~YG~l~~d~~~i~~~N~~G~~l~~~y~~~~~~y~~ 95 (255)
....|-++|+.+-.|+|++|++|.......+..|.-=+.|.....+.+.+...-++...++.....-+.+|.+
T Consensus 152 i~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsiq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s 224 (230)
T KOG3211|consen 152 IVVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSIQETGDFLMLLRFVISLALNGLITAQVLRYWS 224 (230)
T ss_pred hhhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHHHhcCChhhHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3446889999999999999999999999999999999999997766554666677777777666666666644
No 25
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=74.56 E-value=2.1 Score=31.01 Aligned_cols=46 Identities=17% Similarity=0.368 Sum_probs=37.4
Q ss_pred cCcccccchhHHHHHHHhhHHHhhhhccccCeeEEehhhHHHHHHH
Q 042377 159 TKSVEYMPFSLSFFLTLCATMWFFYGLFVKDMVIALPNVLGFLFGI 204 (255)
Q Consensus 159 ~kst~~l~~~~~~~~~~~~~~W~~YG~l~~d~~I~~~N~~G~~l~~ 204 (255)
++..+.+|......+++++++=+.||+.++|..+++...+|.+...
T Consensus 22 k~k~sv~P~~FW~lSl~Gs~lll~Y~i~r~DpV~ilgq~~gl~iy~ 67 (72)
T PF07578_consen 22 KAKKSVVPVAFWYLSLIGSLLLLIYAIIRKDPVFILGQSFGLFIYI 67 (72)
T ss_pred HcCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHhcChHHHH
Confidence 3344457888889999999999999999999988888888876544
No 26
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=73.39 E-value=4.2 Score=33.85 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhhccCCceeeeehhhHHHHHHHHHH
Q 042377 50 VIALSSATLLLYYGLLKSNAVLIITINSIGCVIEVIYL 87 (255)
Q Consensus 50 ~~~~~n~~~W~~YG~l~~d~~~i~~~N~~G~~l~~~y~ 87 (255)
...++++.+|+.|++..+++. ....|......+.+.+
T Consensus 118 ~~~l~~~~~w~~~n~~igS~~-g~l~e~~~~~~n~~~i 154 (163)
T PF10688_consen 118 ILMLVGTLCWLIYNILIGSWG-GTLMEALFIISNLITI 154 (163)
T ss_pred HHHHHHHHHHHHHHHHHcCHH-HHHHHHHHHHHHHHHH
Confidence 468899999999999999974 6777888777775544
No 27
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=72.47 E-value=16 Score=34.00 Aligned_cols=167 Identities=16% Similarity=0.056 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHHHHHhhccCCceeeeehhhHHHHHHHHHHHHHHHhcCcchhHHH-HHHHHHHHHHHHHHHHhhhhhee
Q 042377 47 IPYVIALSSATLLLYYGLLKSNAVLIITINSIGCVIEVIYLMLYLIYAPQKQKSFT-IKLILVFNVGAFALMMVIVNFFV 125 (255)
Q Consensus 47 ~p~~~~~~n~~~W~~YG~l~~d~~~i~~~N~~G~~l~~~y~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~ 125 (255)
..|..+..-+.+=-..|++.|+...|+.+=.++=.++=+.-..+-.-..+++..++ .+.......+++....+++++..
T Consensus 114 ~~yl~~l~lA~iIA~iGLl~nS~avIIGAMlIaPlmgPi~a~a~g~~~~d~~L~~rsl~~l~~g~~~ai~~~~~~~~~~~ 193 (325)
T TIGR00341 114 KGRSVVTILAGIIALSGLIMNNAVILIGAMIIAPLLGPIHGFAVNLSVGDVKLAFRSAKNLLFDLFLVIVFSTIFAMMIG 193 (325)
T ss_pred HhHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566666667778899999986534444444444444444444433344333222 11111111111111122233221
Q ss_pred c----CCce-eeeechhhhHHHHHHhhhhhhhhhhhhccCccc------ccchhHHHHHHHhhHHHhhhhccccCeeEEe
Q 042377 126 K----GPNR-VTAVGCVCAVYNVAVFSAPLSIMRRVIKTKSVE------YMPFSLSFFLTLCATMWFFYGLFVKDMVIAL 194 (255)
Q Consensus 126 ~----~~~~-~~~lG~ia~~~~i~~~~sPl~~i~~vir~kst~------~l~~~~~~~~~~~~~~W~~YG~l~~d~~I~~ 194 (255)
. ++.. +...+....++.+ ++.........+.++.. .....|-...+--++.|--+....+-..++.
T Consensus 194 ~~~~~~ei~~r~~p~~~~l~vAl---~aG~AGalsl~~~~s~aLvGVaIAvaLvPPa~~~Gi~la~g~~~~a~ga~~L~~ 270 (325)
T TIGR00341 194 LVQLTPQILSRTEVSPVSEILAV---LAGIAGILSLSSGILESLAGVAISASLLPPAVATGILLVISPLPLAVKSLILTL 270 (325)
T ss_pred cccCCHHHHHhcCCCHHHHHHHH---HHHHHHHHHHhhccccchHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1 1111 1122222222222 23333334444555544 1222222334444455555555566677888
Q ss_pred hhhHHHHHHHHhhhheEEEeCC
Q 042377 195 PNVLGFLFGIAQMILYLVYKGK 216 (255)
Q Consensus 195 ~N~~G~~l~~~ql~l~~~y~~~ 216 (255)
.|.+|+.++..-.+.+.-|++.
T Consensus 271 ~Nl~~I~la~~~vf~~~g~~p~ 292 (325)
T TIGR00341 271 INVAGLMAGSLAGVYVYGIRAY 292 (325)
T ss_pred HHHHHHHHHHHHHHHHhCCCcc
Confidence 9999999998777766666654
No 28
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=71.02 E-value=3.4 Score=37.20 Aligned_cols=49 Identities=22% Similarity=0.339 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHhhc
Q 042377 14 GLLGNIVSFLVFLAPVPTFLIIYKKKSSEGYHSIPYVIALSSATLLLYYGLL 65 (255)
Q Consensus 14 g~l~~i~ti~~~~Splp~i~~I~k~ks~~~~s~~p~~~~~~n~~~W~~YG~l 65 (255)
.++|.+.+.+-..+.+||+..-+|+|+++++++..|.... ..=..|+.-
T Consensus 167 ~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~---~~n~~y~~s 215 (260)
T KOG2913|consen 167 AILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNS---LGNTTYILS 215 (260)
T ss_pred HHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHHH---ccccccccc
Confidence 3455555666667899999999999999999986665444 444456544
No 29
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=70.01 E-value=11 Score=27.21 Aligned_cols=53 Identities=23% Similarity=0.390 Sum_probs=34.3
Q ss_pred hcHHHHHHHHHhcCCCCccchHH-HHHHHHHHHHHHHhhccCCceeeeehhhHHHHH
Q 042377 27 APVPTFLIIYKKKSSEGYHSIPY-VIALSSATLLLYYGLLKSNAVLIITINSIGCVI 82 (255)
Q Consensus 27 Splp~i~~I~k~ks~~~~s~~p~-~~~~~n~~~W~~YG~l~~d~~~i~~~N~~G~~l 82 (255)
--+-|-..-.|+|. .+-|..| ...+..+++=++||+..+|+. ++.....|.+.
T Consensus 12 Rf~~QW~~SEk~k~--sv~P~~FW~lSl~Gs~lll~Y~i~r~DpV-~ilgq~~gl~i 65 (72)
T PF07578_consen 12 RFIVQWIYSEKAKK--SVVPVAFWYLSLIGSLLLLIYAIIRKDPV-FILGQSFGLFI 65 (72)
T ss_pred HHHHHHHHHHHcCC--CCCcHHHHHHHHHHHHHHHHHHHHHcChH-HHHHHhcChHH
Confidence 34455555555544 3344455 588999999999999999974 45545555444
No 30
>PF15102 TMEM154: TMEM154 protein family
Probab=65.52 E-value=4.5 Score=33.20 Aligned_cols=58 Identities=26% Similarity=0.375 Sum_probs=32.9
Q ss_pred eeEEehhhHHHHHHHHhhhheEEEeCCCCCCC-c-h---------------------hhhhhcccccccCccccccccCC
Q 042377 190 MVIALPNVLGFLFGIAQMILYLVYKGKKGNES-N-Q---------------------KQQECTEMKMNLTEDDKAYTKDN 246 (255)
Q Consensus 190 ~~I~~~N~~G~~l~~~ql~l~~~y~~~~~~~~-~-~---------------------~~~~~~~~~~~~~~~~~~~~~~~ 246 (255)
.+|++|-+++.++-++-+++.++|++++.+.. + + -.+.++.|-|||-+.|++-.++|
T Consensus 59 LmIlIP~VLLvlLLl~vV~lv~~~kRkr~K~~~ss~gsq~~~qt~e~~~Env~~PiFEedtpsvmeiEmeeldkwm~s~n 138 (146)
T PF15102_consen 59 LMILIPLVLLVLLLLSVVCLVIYYKRKRTKQEPSSQGSQSALQTYELGSENVKVPIFEEDTPSVMEIEMEELDKWMNSMN 138 (146)
T ss_pred EEEeHHHHHHHHHHHHHHHheeEEeecccCCCCccccccccccccccCcccccccccccCCcchhhhhHHHHHhHHHhhc
Confidence 45677867776655555666666665544321 1 1 11223344457778888877764
Q ss_pred C
Q 042377 247 N 247 (255)
Q Consensus 247 ~ 247 (255)
+
T Consensus 139 ~ 139 (146)
T PF15102_consen 139 R 139 (146)
T ss_pred c
Confidence 3
No 31
>COG3952 Predicted membrane protein [Function unknown]
Probab=60.37 E-value=4.8 Score=31.23 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=47.3
Q ss_pred hccCcccccchhHHHHHHHhhHHHhhhhccccCeeEEehhhHHHHHHHHhhhheE
Q 042377 157 IKTKSVEYMPFSLSFFLTLCATMWFFYGLFVKDMVIALPNVLGFLFGIAQMILYL 211 (255)
Q Consensus 157 ir~kst~~l~~~~~~~~~~~~~~W~~YG~l~~d~~I~~~N~~G~~l~~~ql~l~~ 211 (255)
.+.++.+.+|....-++++++.+-+.|-+-++|..=+..|++|+..++..+-+..
T Consensus 48 se~a~rsv~P~~FW~~sllGg~l~L~Yfi~~~DpV~Vl~~~~glF~~l~nL~L~~ 102 (113)
T COG3952 48 SEHANRSVIPVLFWYFSLLGGLLLLSYFIRRQDPVFVLGQACGLFIYLRNLWLII 102 (113)
T ss_pred HHhcCCCcchHHHHHHHHHhhHHHHHHHHHhcchHHHHHHhhhHHHHHHHHHHHH
Confidence 4666777899988999999999999999999999888899999998888765543
No 32
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=56.32 E-value=31 Score=30.96 Aligned_cols=46 Identities=17% Similarity=0.142 Sum_probs=30.2
Q ss_pred HHHHhhHHHhhhhccc---cCeeEEehhhHHHHHHHHhhhheEEEeCCC
Q 042377 172 FLTLCATMWFFYGLFV---KDMVIALPNVLGFLFGIAQMILYLVYKGKK 217 (255)
Q Consensus 172 ~~~~~~~~W~~YG~l~---~d~~I~~~N~~G~~l~~~ql~l~~~y~~~~ 217 (255)
.+++.+-.|..||+.. ++..--.-|.+|+.+.++-.++|..-.++.
T Consensus 91 ~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 91 VNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred HHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 3445555566677663 344444559999999999988885554433
No 33
>COG3952 Predicted membrane protein [Function unknown]
Probab=54.76 E-value=1e+02 Score=24.06 Aligned_cols=49 Identities=20% Similarity=0.246 Sum_probs=38.0
Q ss_pred cchHH-HHHHHHHHHHHHHhhccCCceeeeehhhHHHHHHHHHHHHHHHhc
Q 042377 45 HSIPY-VIALSSATLLLYYGLLKSNAVLIITINSIGCVIEVIYLMLYLIYA 94 (255)
Q Consensus 45 s~~p~-~~~~~n~~~W~~YG~l~~d~~~i~~~N~~G~~l~~~y~~~~~~y~ 94 (255)
-|.+| -+.++++.+-+.|-+.++|+. -+..|+.|+..++.-+.+..+-+
T Consensus 56 ~P~~FW~~sllGg~l~L~Yfi~~~DpV-~Vl~~~~glF~~l~nL~L~~ker 105 (113)
T COG3952 56 IPVLFWYFSLLGGLLLLSYFIRRQDPV-FVLGQACGLFIYLRNLWLIIKER 105 (113)
T ss_pred chHHHHHHHHHhhHHHHHHHHHhcchH-HHHHHhhhHHHHHHHHHHHHHHh
Confidence 34445 488999999999999999986 36788888888877777666543
No 34
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=47.69 E-value=6.5 Score=35.98 Aligned_cols=62 Identities=11% Similarity=0.169 Sum_probs=0.0
Q ss_pred hhccCcccccchhHHHHHHHhhHHHhhhhcc-ccCeeEEehhhHHHHHHHHhhhheEEEeCCCCC
Q 042377 156 VIKTKSVEYMPFSLSFFLTLCATMWFFYGLF-VKDMVIALPNVLGFLFGIAQMILYLVYKGKKGN 219 (255)
Q Consensus 156 vir~kst~~l~~~~~~~~~~~~~~W~~YG~l-~~d~~I~~~N~~G~~l~~~ql~l~~~y~~~~~~ 219 (255)
.+|+--++.-....++..|+-.++-++-.++ ...||-+..-..=+++-+.. +.|+|-.+.++
T Consensus 128 lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~L~dL~WL~LFlai--LIWlY~H~~~~ 190 (381)
T PF05297_consen 128 LLRELGASFWTILAFCLAFLLAIVLLIIAVLLHQAWFTILVDLYWLLLFLAI--LIWLYVHDQRH 190 (381)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCCC
Confidence 4444444433333333444444444455544 45777666655544443332 34555444443
No 35
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=45.90 E-value=1.7e+02 Score=29.56 Aligned_cols=52 Identities=19% Similarity=0.446 Sum_probs=39.3
Q ss_pred HHhcHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHhhccCCceeeeehhhHHHHHHHHHH
Q 042377 25 FLAPVPTFLIIYKKKSSEGYHSIPYVIALSSATLLLYYGLLKSNAVLIITINSIGCVIEVIYL 87 (255)
Q Consensus 25 ~~Splp~i~~I~k~ks~~~~s~~p~~~~~~n~~~W~~YG~l~~d~~~i~~~N~~G~~l~~~y~ 87 (255)
+..|...+.+++-.=+-++++|.|+++.++ ++.||.+-+|.= -|+++.++-+
T Consensus 325 ~~~pFE~lv~mYg~P~Y~EiDPT~~~ai~f----~lfFGmM~gD~G-------yGLil~l~~~ 376 (646)
T PRK05771 325 FIKPFESLTEMYSLPKYNEIDPTPFLAIFF----PLFFGMMLGDAG-------YGLLLLLIGL 376 (646)
T ss_pred hhhhHHHHHHHcCCCCCCCcCCccHHHHHH----HHHHHHHHHhHH-------HHHHHHHHHH
Confidence 356888888888888899999999987655 788888888842 2777765333
No 36
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=42.22 E-value=66 Score=28.21 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=45.1
Q ss_pred cCCceeeeechhhhHHHHHHhhhhhhhhhhhhccCcccccchhHHHHHHHh-hHHHh
Q 042377 126 KGPNRVTAVGCVCAVYNVAVFSAPLSIMRRVIKTKSVEYMPFSLSFFLTLC-ATMWF 181 (255)
Q Consensus 126 ~~~~~~~~lG~ia~~~~i~~~~sPl~~i~~vir~kst~~l~~~~~~~~~~~-~~~W~ 181 (255)
+.+...+++|..|++.+-.|.+-.=..+++.+-+-|-++.+.-++..+++| |..|+
T Consensus 127 DN~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~ 183 (290)
T KOG4314|consen 127 DNEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISF 183 (290)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhh
Confidence 456667899999999998887776667788999999998888888888887 55564
No 37
>PF10277 Frag1: Frag1/DRAM/Sfk1 family; InterPro: IPR019402 This entry includes Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor activating protein 1) is a protein that is conserved from fungi to humans. There are four potential iso-prenylation sites throughout the peptide, CILW (x2), CIIW and CIGL. Frag1 is a membrane-spanning protein that is ubiquitously expressed in adult tissues suggesting an important cellular function []. DRAM is a family of proteins conserved from nematodes to humans with six hydrophobic transmembrane regions and an endoplasmic reticulum signal peptide. It is a lysosomal protein that induces macro-autophagy as an effector of p53-mediated death, where p53 is the tumour-suppressor gene that is frequently mutated in cancer. Expression of DRAM is stress-induced []. This region is also part of a family of small plasma membrane proteins, referred to as Sfk1, that may act together with or upstream of Stt4p to generate normal levels of the essential phospholipid PI4P, thus allowing proper localisation of Stt4p to the actin cytoskeleton [, ].
Probab=37.58 E-value=2.4e+02 Score=23.38 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=20.2
Q ss_pred ccchHHHHHHHHHHHHHHHhhccCC
Q 042377 44 YHSIPYVIALSSATLLLYYGLLKSN 68 (255)
Q Consensus 44 ~s~~p~~~~~~n~~~W~~YG~l~~d 68 (255)
++...++.+++.+++-...+....+
T Consensus 90 l~~~~~~~g~~~~~gl~~~a~~~~~ 114 (215)
T PF10277_consen 90 LNILSLVFGLLSAIGLILLAIFQST 114 (215)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccc
Confidence 7888888888888888888876644
No 38
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=35.41 E-value=94 Score=29.88 Aligned_cols=71 Identities=25% Similarity=0.249 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHhhccCCceeeeehhhHHHHHHH
Q 042377 14 GLLGNIVSFLVFLAPVPTFLIIYKKKSSEGYHSIPYVIALSSATLLLYYGLLKSNAVLIITINSIGCVIEV 84 (255)
Q Consensus 14 g~l~~i~ti~~~~Splp~i~~I~k~ks~~~~s~~p~~~~~~n~~~W~~YG~l~~d~~~i~~~N~~G~~l~~ 84 (255)
-+++..-++.=|++-=-++.-++++||.+|+|....+.-++..++=++|=+=.+..+.|.+++++|+++.+
T Consensus 303 ~~vs~lH~~f~fLAFKnDi~fW~~~k~~~GlS~rtv~~~~~~~~iIfLYL~D~~ts~lil~~~gig~~ie~ 373 (438)
T PF05602_consen 303 FVVSLLHSVFDFLAFKNDISFWRKRKSMEGLSVRTVLWNCFSQIIIFLYLLDNETSWLILVPSGIGLLIEA 373 (438)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhccCCcccccHHHHHHHHHHHHheeeeEEeCCCcEEeehHhHhHHhHhh
Confidence 34555566777788889999999999999999999988888888888886543333458999999999974
No 39
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=31.95 E-value=5.2e+02 Score=26.68 Aligned_cols=17 Identities=35% Similarity=0.516 Sum_probs=13.9
Q ss_pred cHHHHHHHHHhcCCCCc
Q 042377 28 PVPTFLIIYKKKSSEGY 44 (255)
Q Consensus 28 plp~i~~I~k~ks~~~~ 44 (255)
=+|.+..+.+.+.+++-
T Consensus 231 llP~~~~~l~~~r~~~~ 247 (843)
T PF09586_consen 231 LLPTILSLLQSKRSGGS 247 (843)
T ss_pred HHHHHHHHHhCCCccCC
Confidence 57888888888888775
No 40
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=31.47 E-value=5.5e+02 Score=26.24 Aligned_cols=59 Identities=17% Similarity=0.410 Sum_probs=44.4
Q ss_pred HHhcHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHhhccCCceeeeehhhHHHHHHHHHHHHHHHhc
Q 042377 25 FLAPVPTFLIIYKKKSSEGYHSIPYVIALSSATLLLYYGLLKSNAVLIITINSIGCVIEVIYLMLYLIYA 94 (255)
Q Consensus 25 ~~Splp~i~~I~k~ks~~~~s~~p~~~~~~n~~~W~~YG~l~~d~~~i~~~N~~G~~l~~~y~~~~~~y~ 94 (255)
+.+|++.+.++.--=+-++++|.|+++.++ ++.||++..|.- -|+++.++-+++..+..
T Consensus 339 ~i~~Fe~l~emY~iPkY~EidPt~~~a~~F----p~fFG~M~gD~g-------yGlll~l~sl~l~~~~~ 397 (660)
T COG1269 339 FISPFESLTEMYGIPKYGEIDPTPFLALFF----PLFFGIMFGDLG-------YGLLLFLISLLLLRYFK 397 (660)
T ss_pred ccchHHHHHHHhcCCCCCCcCCcchHHHHH----HHHHHHHHHhHH-------HHHHHHHHHHHHHHhcc
Confidence 457888888888888888999999988765 788888888853 27777766666555544
No 41
>KOG3618 consensus Adenylyl cyclase [General function prediction only]
Probab=30.47 E-value=6.2e+02 Score=26.97 Aligned_cols=30 Identities=10% Similarity=0.064 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhhccCCc-eeeeehhhHHH
Q 042377 51 IALSSATLLLYYGLLKSNA-VLIITINSIGC 80 (255)
Q Consensus 51 ~~~~n~~~W~~YG~l~~d~-~~i~~~N~~G~ 80 (255)
-..+.|++|.+|=...... |...++-.++.
T Consensus 87 YI~~~~l~W~lYfav~~rs~fi~~~~~slc~ 117 (1318)
T KOG3618|consen 87 YIGFACLLWSLYFAVHMRSRFIVMVAPSLCF 117 (1318)
T ss_pred HHHHHHHHHHHHheeccCceeeeehHHHHHH
Confidence 3456789999997655432 42344344433
No 42
>PRK11387 S-methylmethionine transporter; Provisional
Probab=29.56 E-value=3.8e+02 Score=25.56 Aligned_cols=21 Identities=10% Similarity=0.278 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhcHHHHHHHHH
Q 042377 17 GNIVSFLVFLAPVPTFLIIYK 37 (255)
Q Consensus 17 ~~i~ti~~~~Splp~i~~I~k 37 (255)
+....+..|+...-...+.+|
T Consensus 371 ~~~~~li~y~~~~~~~i~lr~ 391 (471)
T PRK11387 371 SGFAVVAVWLSICASHFMFRR 391 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444433333333
No 43
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=28.95 E-value=3.8e+02 Score=27.26 Aligned_cols=77 Identities=14% Similarity=0.124 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchHH-HHHHHHHHHHHHHhhccCCceeeeehhhHHHHHHHHHHH
Q 042377 10 AFIFGLLGNIVSFLVFLAPVPTFLIIYKKKSSEGYHSIPY-VIALSSATLLLYYGLLKSNAVLIITINSIGCVIEVIYLM 88 (255)
Q Consensus 10 ~~i~g~l~~i~ti~~~~Splp~i~~I~k~ks~~~~s~~p~-~~~~~n~~~W~~YG~l~~d~~~i~~~N~~G~~l~~~y~~ 88 (255)
..++|++|-+.-.. =-+-|....-|+|. +.=|..| ...++++++=+.|++..+|+. .+.....|.+..+=-+.
T Consensus 140 ~~~~G~~~q~~f~~---Rf~~Qw~~se~~~~--s~~p~~FW~~s~~G~~~~l~Y~i~r~dpv-~i~g~~~g~~~y~rnl~ 213 (608)
T PRK01021 140 WHLIGCIGLTIFSL---RFFIQWFYLEYNNQ--SALPALFWKASLLGGSLALLYFIRTGDPV-NILCYGCGLFPSLANLR 213 (608)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHhcCC--CCCcHHHHHHHHHhHHHHHHHHHHhCCce-EEEccccchhHHHHHHH
Confidence 34445554443322 23344444444433 2334444 578999999999999999997 68889999998765554
Q ss_pred HHHH
Q 042377 89 LYLI 92 (255)
Q Consensus 89 ~~~~ 92 (255)
+.++
T Consensus 214 li~~ 217 (608)
T PRK01021 214 IAYK 217 (608)
T ss_pred HHHh
Confidence 4443
No 44
>PRK10580 proY putative proline-specific permease; Provisional
Probab=27.55 E-value=4.5e+02 Score=24.91 Aligned_cols=26 Identities=8% Similarity=0.231 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHh
Q 042377 13 FGLLGNIVSFLVFLAPVPTFLIIYKK 38 (255)
Q Consensus 13 ~g~l~~i~ti~~~~Splp~i~~I~k~ 38 (255)
+.-++.......|+.+.....+.+|+
T Consensus 360 l~~~~~~~~~~~y~~~~~~~~~lr~~ 385 (457)
T PRK10580 360 IASLATFATVWVWIMILLSQIAFRRR 385 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555565555555554
No 45
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=27.47 E-value=1.8e+02 Score=28.87 Aligned_cols=192 Identities=17% Similarity=0.137 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHhhccCCceeeeehhhHHHHHHHHHHH-------
Q 042377 16 LGNIVSFLVFLAPVPTFLIIYKKKSSEGYHSIPYVIALSSATLLLYYGLLKSNAVLIITINSIGCVIEVIYLM------- 88 (255)
Q Consensus 16 l~~i~ti~~~~Splp~i~~I~k~ks~~~~s~~p~~~~~~n~~~W~~YG~l~~d~~~i~~~N~~G~~l~~~y~~------- 88 (255)
+..+-++.=|++-=-++.-+.++||-+++|.-..+..+++++.=+.|=+=.+-.+.|.++-.+|.++.++=+-
T Consensus 324 VS~lH~vFdfLAFKNDIqFWn~rKsmeGLS~rsvl~~~F~s~IIflYllDneTs~mVlvs~gvG~~IE~WKi~K~m~v~i 403 (592)
T KOG2489|consen 324 VSILHSVFDFLAFKNDIQFWNKRKSMEGLSVRSVLWRCFSSLIIFLYLLDNETSFMVLVSVGVGLLIELWKIKKAMKVEI 403 (592)
T ss_pred HHHHHHHHHHHHhcchHHHhccccccccccHHHHHHHHHHHHhhhheeecCCccEEEEEeccceeeeeeeecceEEEEEE
Confidence 4444555556666678888999999999999999999999998888864333335578888889888532210
Q ss_pred -----HH-----------HHhcCcchhH--HHH-HHHHHH-HHHHHHHHHhhhhheec-CCceeeeechhhhHHHHHHhh
Q 042377 89 -----LY-----------LIYAPQKQKS--FTI-KLILVF-NVGAFALMMVIVNFFVK-GPNRVTAVGCVCAVYNVAVFS 147 (255)
Q Consensus 89 -----~~-----------~~y~~~~~~~--~~~-~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~~~lG~ia~~~~i~~~~ 147 (255)
++ =.|+.++.+. .+. +-..++ .-+..|. .++++...+ ..=-.-++..+.+.+-.+-|+
T Consensus 404 d~~g~i~gv~pRl~f~dkgsysE~~Tk~yD~~A~kYLs~~L~PL~vg~-aVYSLlY~~hKsWYSWvLn~l~~~vy~FGFi 482 (592)
T KOG2489|consen 404 DWSGLIPGVLPRLSFSDKGSYSESKTKEYDDQAMKYLSYLLFPLLVGG-AVYSLLYVEHKSWYSWVLNSLYNGVYAFGFI 482 (592)
T ss_pred ecccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHH-HHHhhhhcccccHHHHHHHHHHhHHHHHHHH
Confidence 00 0222222111 111 111111 0111121 223332222 222234555555555555555
Q ss_pred hhhhhhhhhhccCcccccchhHHHHHHHhhHHHhhhh------------ccccCeeEEehhhHHHHHHHHhhhheEEEeC
Q 042377 148 APLSIMRRVIKTKSVEYMPFSLSFFLTLCATMWFFYG------------LFVKDMVIALPNVLGFLFGIAQMILYLVYKG 215 (255)
Q Consensus 148 sPl~~i~~vir~kst~~l~~~~~~~~~~~~~~W~~YG------------~l~~d~~I~~~N~~G~~l~~~ql~l~~~y~~ 215 (255)
-=+||+.-.+|-||++.+|..+..--++|.+.==+++ ++++|+.- ++++..=|+||-
T Consensus 483 ~M~PQLFINYKLKSVAHLPWR~~tYKa~NTFIDDlFAFVIkMPt~hRl~CfRDDIVF-----------lIYLYQRWlYpV 551 (592)
T KOG2489|consen 483 FMLPQLFINYKLKSVAHLPWRAFTYKAFNTFIDDLFAFVIKMPTLHRLACFRDDIVF-----------LIYLYQRWLYPV 551 (592)
T ss_pred HhChHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccceEE-----------Eeeehhhhcccc
Confidence 6677899999999999999998877777766433333 33445321 235555688886
Q ss_pred CCCC
Q 042377 216 KKGN 219 (255)
Q Consensus 216 ~~~~ 219 (255)
.+.|
T Consensus 552 D~tR 555 (592)
T KOG2489|consen 552 DKTR 555 (592)
T ss_pred Chhh
Confidence 6665
No 46
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=27.01 E-value=1.1e+02 Score=17.45 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=13.2
Q ss_pred HHHhcHHHHHHHHHhcC
Q 042377 24 VFLAPVPTFLIIYKKKS 40 (255)
Q Consensus 24 ~~~Splp~i~~I~k~ks 40 (255)
...+.+|.+..++|+|.
T Consensus 8 vla~~LP~lISWIK~kr 24 (26)
T PF01372_consen 8 VLATGLPTLISWIKNKR 24 (26)
T ss_dssp HHHTHHHHHHHHHHHHH
T ss_pred HHHhcChHHHHHHHHHh
Confidence 33578899999999874
No 47
>PHA03049 IMV membrane protein; Provisional
Probab=26.85 E-value=32 Score=24.43 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=18.1
Q ss_pred HHHHHHHHhhhheEEEeCCCCCCCc
Q 042377 198 LGFLFGIAQMILYLVYKGKKGNESN 222 (255)
Q Consensus 198 ~G~~l~~~ql~l~~~y~~~~~~~~~ 222 (255)
++++..++-+.+|-+|.+++....+
T Consensus 8 ~iICVaIi~lIvYgiYnkk~~~q~~ 32 (68)
T PHA03049 8 VIICVVIIGLIVYGIYNKKTTTSQN 32 (68)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCC
Confidence 4566677778899999987665444
No 48
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=26.48 E-value=1.1e+02 Score=28.52 Aligned_cols=51 Identities=12% Similarity=0.071 Sum_probs=34.1
Q ss_pred chHHHHHHHHHHHHHHHhhccCCceeeeehhhHHHHHHHHHHHHHHHhcCcc
Q 042377 46 SIPYVIALSSATLLLYYGLLKSNAVLIITINSIGCVIEVIYLMLYLIYAPQK 97 (255)
Q Consensus 46 ~~p~~~~~~n~~~W~~YG~l~~d~~~i~~~N~~G~~l~~~y~~~~~~y~~~~ 97 (255)
..|-.+...-++.|-.+....+... ++..|.+|+.++..-++.++-|.+.+
T Consensus 243 LvPPa~~~Gi~la~g~~~~a~ga~~-L~~~Nl~~I~la~~~vf~~~g~~p~~ 293 (325)
T TIGR00341 243 LLPPAVATGILLVISPLPLAVKSLI-LTLINVAGLMAGSLAGVYVYGIRAYR 293 (325)
T ss_pred hhchHHHHHHHHHhccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 3444444555555555555555555 78999999999988777777776544
No 49
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.35 E-value=2.5e+02 Score=24.37 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=45.1
Q ss_pred HhcHHHHHHHHHhcCCCCccchHHHHH----HHHHHHHHHHhhccCCceeeeehhhHHHHHHHHHHHHHHHhc
Q 042377 26 LAPVPTFLIIYKKKSSEGYHSIPYVIA----LSSATLLLYYGLLKSNAVLIITINSIGCVIEVIYLMLYLIYA 94 (255)
Q Consensus 26 ~Splp~i~~I~k~ks~~~~s~~p~~~~----~~n~~~W~~YG~l~~d~~~i~~~N~~G~~l~~~y~~~~~~y~ 94 (255)
.|=+||++-+.|+|++|.+...-..+. .+-|.=|+ |-+..++.++ ..+=+-|++-...|.-.|+.|-
T Consensus 129 VaILPQL~~lq~tg~~E~~TahYvfaLG~yR~ly~~~WI-~r~~~e~~~~-~iai~agiVQT~ly~DFfy~Y~ 199 (212)
T KOG3106|consen 129 VAILPQLFMLQKTGEAETITAHYLFALGLYRALYIANWI-YRYVTEDFWD-PIAIVAGIVQTVLYADFFYLYV 199 (212)
T ss_pred HHHhHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHH-HHHHhhcccc-chHHHHHHHHHHHHHhHHHHHH
Confidence 356899999999999999886554443 34466665 4455555443 3445567777777777777774
No 50
>TIGR02003 PTS-II-BC-unk1 PTS system, IIBC component. This model represents a family of fused B and C components of PTS enzyme II. This clade is a member of a larger family which contains enzyme II's specific for a variety of sugars including glucose (TIGR02002) and N-acetylglucosamine (TIGR01998). None of the members of this clade have been experimentally characterized. This clade includes sequences from Streptococcus and Enterococcus which also include a C-terminal A domain as well as Bacillus and Clostridium which do not. In nearly all cases, these species also contain an authentic glucose-specific PTS transporter.
Probab=25.32 E-value=2.3e+02 Score=28.37 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=13.9
Q ss_pred cCeeEEehhhHHHHHHHHhhhhe
Q 042377 188 KDMVIALPNVLGFLFGIAQMILY 210 (255)
Q Consensus 188 ~d~~I~~~N~~G~~l~~~ql~l~ 210 (255)
++|+.+++ +|++...+|.++|
T Consensus 411 ~~~~~~~~--iGi~~~~iYy~vF 431 (548)
T TIGR02003 411 MDLINFVI--VSILFAGIMFFIA 431 (548)
T ss_pred cCchhHHH--HHHHHHHHHHHHH
Confidence 35555544 6888888776665
No 51
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=24.82 E-value=96 Score=30.59 Aligned_cols=9 Identities=11% Similarity=0.394 Sum_probs=3.9
Q ss_pred cccCccccc
Q 042377 233 MNLTEDDKA 241 (255)
Q Consensus 233 ~~~~~~~~~ 241 (255)
.|+.||+-|
T Consensus 416 ~~~~~~~gp 424 (524)
T PF05977_consen 416 LDVEPDSGP 424 (524)
T ss_pred CCCCCCCCC
Confidence 344444433
No 52
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=23.40 E-value=6.1e+02 Score=24.44 Aligned_cols=43 Identities=21% Similarity=0.396 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHH-----HhcHHHHHHHHHhcCCCCccchHHHHHH
Q 042377 11 FIFGLLGNIVSFLVF-----LAPVPTFLIIYKKKSSEGYHSIPYVIAL 53 (255)
Q Consensus 11 ~i~g~l~~i~ti~~~-----~Splp~i~~I~k~ks~~~~s~~p~~~~~ 53 (255)
..+-.+|.+.|..+- +.--|-+..+.|+-..+.-.+.||.+..
T Consensus 94 ~~v~ll~~~vTaflsND~talilTPivla~~~~~~~~~~~~lp~l~a~ 141 (423)
T PF02040_consen 94 LLVYLLGAVVTAFLSNDATALILTPIVLALARRLGLNPKPPLPFLFAC 141 (423)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHcCCCcccchHHHHHH
Confidence 344455666555443 3345777777777777766677876554
No 53
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=23.19 E-value=3.4e+02 Score=20.61 Aligned_cols=62 Identities=13% Similarity=0.041 Sum_probs=35.6
Q ss_pred HHHHHhcCCCCccchHHHHHHHHHHHHHHHhhccCCceeeeehhhHHHHHHHHHHHHHHHhcC
Q 042377 33 LIIYKKKSSEGYHSIPYVIALSSATLLLYYGLLKSNAVLIITINSIGCVIEVIYLMLYLIYAP 95 (255)
Q Consensus 33 ~~I~k~ks~~~~s~~p~~~~~~n~~~W~~YG~l~~d~~~i~~~N~~G~~l~~~y~~~~~~y~~ 95 (255)
.+.+|+-..=+-..+|.+......++=+++..++++.- +..--..|.+.++.-..+|=.+++
T Consensus 22 Vq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~-l~~~~~aG~laGlAaTGL~e~~t~ 83 (93)
T PF06946_consen 22 VQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGN-LALMAWAGGLAGLAATGLFEQFTN 83 (93)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHhhhhhhhHHHHHHh
Confidence 34444422224477888887777777777777776542 222223466666666666655554
No 54
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.43 E-value=4.3e+02 Score=25.00 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=21.4
Q ss_pred HHhhHHHhhhhccccCeeEEehhhHHHHHHHHhhhheEEE
Q 042377 174 TLCATMWFFYGLFVKDMVIALPNVLGFLFGIAQMILYLVY 213 (255)
Q Consensus 174 ~~~~~~W~~YG~l~~d~~I~~~N~~G~~l~~~ql~l~~~y 213 (255)
++=++.|++||=-.+ +=++||+..-+--+-.+.-.|-|
T Consensus 241 ILF~I~~il~~g~~g--~W~FPNL~eDvGfleSF~PLy~~ 278 (372)
T KOG2927|consen 241 ILFGITWILTGGKHG--FWLFPNLTEDVGFLESFKPLYEY 278 (372)
T ss_pred HHHHHHHHHhCCCCc--eEeccchhhhhhHHHhhcccccc
Confidence 344678998884333 44789997653333333333444
No 55
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=22.11 E-value=3.3e+02 Score=26.87 Aligned_cols=159 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHH-HHHHHHHHHHHhcHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHhhccCCceeeeehhhHHHHH
Q 042377 4 LTPHQLAFIFGL-LGNIVSFLVFLAPVPTFLIIYKKKSSEGYHSIPYVIALSSATLLLYYGLLKSNAVLIITINSIGCVI 82 (255)
Q Consensus 4 ~~~~~~~~i~g~-l~~i~ti~~~~Splp~i~~I~k~ks~~~~s~~p~~~~~~n~~~W~~YG~l~~d~~~i~~~N~~G~~l 82 (255)
+.+++-...+|+ +|......++.+|.-..+. .|++++..==...+...++.|++.+...+.-+++..++..-=+-.-+
T Consensus 64 lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws-~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gv 142 (488)
T KOG2325|consen 64 LDPTATATFFGLVIAASSLGHAIFSLIFGIWS-NKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGV 142 (488)
T ss_pred cCCCCCcchhhHHHHHHHHHHHhcchhhcccc-cccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCc
Q ss_pred HHHHHHHHHHh----cCcchhHHHHHHHHHHHHHHHHHHHhhhhheec-CCceeeeec-----------hhhhHHHHHHh
Q 042377 83 EVIYLMLYLIY----APQKQKSFTIKLILVFNVGAFALMMVIVNFFVK-GPNRVTAVG-----------CVCAVYNVAVF 146 (255)
Q Consensus 83 ~~~y~~~~~~y----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~lG-----------~ia~~~~i~~~ 146 (255)
+.--..+...| +..+.|.+.........++++.+....-.++.. +++..++.+ .++.++++...
T Consensus 143 g~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~ 222 (488)
T KOG2325|consen 143 GVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYI 222 (488)
T ss_pred CcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhhhccCccc
Q 042377 147 SAPLSIMRRVIKTKSVE 163 (255)
Q Consensus 147 ~sPl~~i~~vir~kst~ 163 (255)
..=..-++++.|..+.+
T Consensus 223 v~i~~~f~E~~~~~~~~ 239 (488)
T KOG2325|consen 223 VIILFFFKEVYRGIIDK 239 (488)
T ss_pred HHHHhheeecccCcccc
No 56
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.88 E-value=1.4e+02 Score=23.68 Aligned_cols=25 Identities=16% Similarity=0.630 Sum_probs=16.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhcH
Q 042377 5 TPHQLAFIFGLLGNIVSFLVFLAPV 29 (255)
Q Consensus 5 ~~~~~~~i~g~l~~i~ti~~~~Spl 29 (255)
.++.+..++|.+|.++.++++++.+
T Consensus 63 ~~~i~~Ii~gv~aGvIg~Illi~y~ 87 (122)
T PF01102_consen 63 EPAIIGIIFGVMAGVIGIILLISYC 87 (122)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeehhHHHHHHHHHHHHHHHHH
Confidence 3455677888888887777655544
No 57
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=20.82 E-value=3.2e+02 Score=23.85 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=16.1
Q ss_pred ehhhHHHHHHHHh-hhheEEEeCCCCCCC
Q 042377 194 LPNVLGFLFGIAQ-MILYLVYKGKKGNES 221 (255)
Q Consensus 194 ~~N~~G~~l~~~q-l~l~~~y~~~~~~~~ 221 (255)
+.|..|+++-+.- ++++..-+++=||++
T Consensus 175 l~N~~gl~~~~fg~~V~~~~~~~~~kr~~ 203 (214)
T cd08764 175 LGNFIGIVLVIFGGLVVYLVTEPDYKRIE 203 (214)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccCCCC
Confidence 4799998877655 334444444434433
No 58
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=20.36 E-value=4.1e+02 Score=22.51 Aligned_cols=48 Identities=17% Similarity=0.280 Sum_probs=30.3
Q ss_pred HHHHHhhHHHhhhhc----cccCeeEEehhhHHHHHHHHhhhheEEEeCCCC
Q 042377 171 FFLTLCATMWFFYGL----FVKDMVIALPNVLGFLFGIAQMILYLVYKGKKG 218 (255)
Q Consensus 171 ~~~~~~~~~W~~YG~----l~~d~~I~~~N~~G~~l~~~ql~l~~~y~~~~~ 218 (255)
+...+..++|..--. +-....+.+|+...++++++.+.+.+.+.++-+
T Consensus 151 ~~~~~~~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 151 LISVLAMVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334444556642221 123445677899999999999888877665433
Done!