Query 042377
Match_columns 255
No_of_seqs 152 out of 1636
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 09:25:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042377.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042377hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 19.0 1E+02 0.0036 27.2 4.3 22 198-219 412-433 (445)
2 2jln_A MHP1; hydantoin, transp 19.0 34 0.0012 31.9 1.0 55 197-251 431-491 (501)
3 3tlw_A GLR4197 protein, GLIC; 13.3 4.6E+02 0.016 22.3 6.9 15 77-91 207-221 (321)
4 1yua_A Topoisomerase I; gene-r 12.3 1.1E+02 0.0038 23.0 2.1 56 188-250 24-83 (122)
5 4djk_A Probable glutamate/gamm 9.4 1.2E+02 0.0043 27.3 1.9 15 137-151 373-387 (511)
6 1scf_A Stem cell factor; steel 8.9 72 0.0024 27.4 0.0 43 191-233 217-262 (273)
7 3bkd_A Transmembrane domain of 7.6 77 0.0026 17.3 -0.2 14 67-81 2-15 (26)
8 3qrx_B Melittin; calcium-bindi 7.5 2.4E+02 0.0082 15.2 1.7 15 26-40 10-24 (26)
9 2k9p_A Pheromone alpha factor 7.1 5E+02 0.017 18.0 3.8 23 71-93 49-71 (80)
10 2nr1_A NR1 M2, M2; receptor, s 6.6 1.5E+02 0.0052 16.4 0.7 14 175-188 9-22 (27)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=19.04 E-value=1e+02 Score=27.16 Aligned_cols=22 Identities=9% Similarity=0.143 Sum_probs=11.6
Q ss_pred HHHHHHHHhhhheEEEeCCCCC
Q 042377 198 LGFLFGIAQMILYLVYKGKKGN 219 (255)
Q Consensus 198 ~G~~l~~~ql~l~~~y~~~~~~ 219 (255)
.|+..-+.-+..|+.+++++++
T Consensus 412 ~~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 412 WSFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHhhhccc
Confidence 3444444555566666555444
No 2
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=18.99 E-value=34 Score=31.93 Aligned_cols=55 Identities=18% Similarity=0.117 Sum_probs=14.4
Q ss_pred hHHHHHHH-HhhhheEEEeCCCCCCCchhhhhh--cccccccC---ccccccccCCCCCCC
Q 042377 197 VLGFLFGI-AQMILYLVYKGKKGNESNQKQQEC--TEMKMNLT---EDDKAYTKDNNQPTD 251 (255)
Q Consensus 197 ~~G~~l~~-~ql~l~~~y~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~ 251 (255)
.+|++++. ++..+-.+.|+++++.+++..+|+ .+.+-+.. |++|++||..|||..
T Consensus 431 ~~g~~va~v~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (501)
T 2jln_A 431 VTGLIAALLLHIPAMRWVAKTFPLFSEAESRNEDYLRPIGPVAPADESATANTKEQNQPAG 491 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCSCCGGGGGHHHHHSCCC---------------------
T ss_pred HHHHHHHHHHHHHHHHhCchhhhhcccccccccchhccccCCCcccCCCccchhhcCCCCC
Confidence 45555553 334333344443444443322222 22222233 445556788888753
No 3
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=13.29 E-value=4.6e+02 Score=22.27 Aligned_cols=15 Identities=13% Similarity=-0.093 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHH
Q 042377 77 SIGCVIEVIYLMLYL 91 (255)
Q Consensus 77 ~~G~~l~~~y~~~~~ 91 (255)
.++.++.+.-...||
T Consensus 207 iP~~li~~ls~~sF~ 221 (321)
T 3tlw_A 207 LPMLFILFISWTAFW 221 (321)
T ss_dssp HHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHhheeec
Confidence 345555555566666
No 4
>1yua_A Topoisomerase I; gene-regulating protein, DNA binding protein; NMR {Escherichia coli} SCOP: g.41.3.3 g.41.3.3
Probab=12.34 E-value=1.1e+02 Score=23.02 Aligned_cols=56 Identities=11% Similarity=0.115 Sum_probs=32.1
Q ss_pred cCeeEEehhhHHHHHHHHhhhheEEEeCCCCCCCchhhhhhcccccccCc----cccccccCCCCCC
Q 042377 188 KDMVIALPNVLGFLFGIAQMILYLVYKGKKGNESNQKQQECTEMKMNLTE----DDKAYTKDNNQPT 250 (255)
Q Consensus 188 ~d~~I~~~N~~G~~l~~~ql~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 250 (255)
+|.||+-=-+.|++++..+ ||+ .+..+..+-+|.-.+.=+|.| .+++|.+|++||-
T Consensus 24 d~~fVLRDGAsGlFlAAs~------FPK-~RETRaP~V~EL~~~~d~l~~K~~yL~~AP~~D~~Gn~ 83 (122)
T 1yua_A 24 DAYFVLRDGAAGVFLAANT------FPK-SRETRAPLVEELYRFRDRLPEKLRYLADAPQQDPEGNK 83 (122)
T ss_dssp SCEEEEECCSSSCEEEETT------TTS-CCCCCSCBHHHHHHTTTTCCSTTHHHHHSCSSCTTCCC
T ss_pred CCEEEeeCCchhhhhhhcc------CCc-cccccchHHHHHHHHHHhcCHHHHHhhcCCccCCCCCe
Confidence 4566666566565433332 232 222223455666666655555 4789999999985
No 5
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=9.38 E-value=1.2e+02 Score=27.26 Aligned_cols=15 Identities=7% Similarity=0.104 Sum_probs=6.7
Q ss_pred hhhHHHHHHhhhhhh
Q 042377 137 VCAVYNVAVFSAPLS 151 (255)
Q Consensus 137 ia~~~~i~~~~sPl~ 151 (255)
++++.....|..+..
T Consensus 373 ~~~~~~~~~y~~~~~ 387 (511)
T 4djk_A 373 LTVVIYLCAYFMLFI 387 (511)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444545543
No 6
>1scf_A Stem cell factor; steel factor, KIT ligand, MAST cell growth factor, hormone/growth factor complex; HET: 1PE; 2.20A {Homo sapiens} SCOP: a.26.1.2 PDB: 1exz_A 2e9w_C* 2o27_A 2o26_A
Probab=8.86 E-value=72 Score=27.38 Aligned_cols=43 Identities=28% Similarity=0.417 Sum_probs=0.0
Q ss_pred eEEehhhHHHHHHHHhhhheEEEeCCCCCCC--c-hhhhhhccccc
Q 042377 191 VIALPNVLGFLFGIAQMILYLVYKGKKGNES--N-QKQQECTEMKM 233 (255)
Q Consensus 191 ~I~~~N~~G~~l~~~ql~l~~~y~~~~~~~~--~-~~~~~~~~~~~ 233 (255)
.+.+|..+.+++|++.-++||.....+..+. + +-.||+++.+|
T Consensus 217 ~~~l~al~slvigf~~ga~~wk~k~~~~~~~~e~iq~~~e~ne~sm 262 (273)
T 1scf_A 217 AMALPALFSLIIGFAFGALYWKKRQPSLTRAVENIQINEEDNEISM 262 (273)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCccchhhhhcccccchhHHHH
Confidence 4456666677777766667765544333322 2 45778887776
No 7
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=7.61 E-value=77 Score=17.27 Aligned_cols=14 Identities=14% Similarity=0.510 Sum_probs=8.4
Q ss_pred CCceeeeehhhHHHH
Q 042377 67 SNAVLIITINSIGCV 81 (255)
Q Consensus 67 ~d~~~i~~~N~~G~~ 81 (255)
+|+. ++++|.+|.+
T Consensus 2 sDpl-v~aa~iiGil 15 (26)
T 3bkd_A 2 SDPL-VVAASIMGIL 15 (26)
T ss_dssp CCHH-HHHHHHHHHH
T ss_pred CCcc-hhHHHHHHHH
Confidence 3554 5667777754
No 8
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=7.53 E-value=2.4e+02 Score=15.23 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=11.8
Q ss_pred HhcHHHHHHHHHhcC
Q 042377 26 LAPVPTFLIIYKKKS 40 (255)
Q Consensus 26 ~Splp~i~~I~k~ks 40 (255)
...+|.+..++|+|.
T Consensus 10 a~~LP~liSWiK~kr 24 (26)
T 3qrx_B 10 TTGLPALISWIKRKR 24 (26)
T ss_pred HccchHHHHHHHHHh
Confidence 357888888888875
No 9
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=7.11 E-value=5e+02 Score=17.97 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=12.6
Q ss_pred eeeehhhHHHHHHHHHHHHHHHh
Q 042377 71 LIITINSIGCVIEVIYLMLYLIY 93 (255)
Q Consensus 71 ~i~~~N~~G~~l~~~y~~~~~~y 93 (255)
|++..|...+++..+-..++..|
T Consensus 49 piF~lN~~~L~l~iirs~l~~~y 71 (80)
T 2k9p_A 49 PIFIINQVSLFLIILHSALYFKY 71 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 45555666665555555555444
No 10
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=6.57 E-value=1.5e+02 Score=16.41 Aligned_cols=14 Identities=36% Similarity=1.084 Sum_probs=0.0
Q ss_pred HhhHHHhhhhcccc
Q 042377 175 LCATMWFFYGLFVK 188 (255)
Q Consensus 175 ~~~~~W~~YG~l~~ 188 (255)
+.+.+|+..|.+.+
T Consensus 9 l~aa~wF~WGvlln 22 (27)
T 2nr1_A 9 LSSAMWFSWGVLLN 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhHHHhhHhhee
Done!