Query 042377
Match_columns 255
No_of_seqs 152 out of 1636
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 09:25:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042377.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042377hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 6.1 1.7E+02 0.012 17.5 2.4 19 12-32 36-54 (56)
2 d1yuaa2 g.41.3.3 (A:66-122) Pr 5.5 83 0.006 19.1 0.6 12 239-250 7-18 (57)
3 d1fftb2 f.17.2.1 (B:27-117) Cy 5.4 39 0.0029 22.3 -1.2 12 206-217 36-47 (91)
4 d2axtt1 f.23.34.1 (T:1-30) Pho 5.0 2.3E+02 0.017 14.3 2.1 14 79-92 11-24 (30)
5 d1xioa_ f.13.1.1 (A:) Sensory 4.3 5E+02 0.037 18.9 4.9 15 50-64 167-181 (226)
6 d1dtja_ d.51.1.1 (A:) Neuro-on 3.9 1.6E+02 0.012 17.8 1.2 20 223-242 26-45 (74)
7 d1k1aa_ d.211.1.1 (A:) bcl-3 { 3.9 1.7E+02 0.013 19.7 1.5 16 238-253 200-215 (228)
8 d1myoa_ d.211.1.1 (A:) Myotrop 3.7 1.8E+02 0.013 18.6 1.4 16 238-253 91-106 (118)
9 d1vf5c3 f.23.23.1 (C:250-286) 3.0 4.5E+02 0.033 14.1 4.0 29 12-45 6-34 (37)
10 d1rkla_ f.23.30.1 (A:) Oligosa 2.8 94 0.0069 16.7 -0.8 28 196-223 8-35 (36)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=6.11 E-value=1.7e+02 Score=17.54 Aligned_cols=19 Identities=16% Similarity=0.473 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHhcHHHH
Q 042377 12 IFGLLGNIVSFLVFLAPVPTF 32 (255)
Q Consensus 12 i~g~l~~i~ti~~~~Splp~i 32 (255)
++|++|.+.-+.+ .|++.+
T Consensus 36 i~G~IGf~I~li~--~~i~~i 54 (56)
T d1rh5b_ 36 LLGIIGYIIHVPA--TYIKGI 54 (56)
T ss_dssp HHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHH--HHhhhh
Confidence 4566676666554 566654
No 2
>d1yuaa2 g.41.3.3 (A:66-122) Prokaryotic DNA topoisomerase I, a C-terminal fragment {Escherichia coli [TaxId: 562]}
Probab=5.48 E-value=83 Score=19.13 Aligned_cols=12 Identities=17% Similarity=0.111 Sum_probs=9.0
Q ss_pred ccccccCCCCCC
Q 042377 239 DKAYTKDNNQPT 250 (255)
Q Consensus 239 ~~~~~~~~~~~~ 250 (255)
.++|.+|..||-
T Consensus 7 ~~AP~~D~dGn~ 18 (57)
T d1yuaa2 7 ADAPQQDPEGNK 18 (57)
T ss_dssp HHSCSSCTTCCC
T ss_pred hcCCccCCCCCE
Confidence 467888888874
No 3
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=5.39 E-value=39 Score=22.28 Aligned_cols=12 Identities=8% Similarity=0.174 Sum_probs=5.3
Q ss_pred hhhheEEEeCCC
Q 042377 206 QMILYLVYKGKK 217 (255)
Q Consensus 206 ql~l~~~y~~~~ 217 (255)
.+...++|++++
T Consensus 36 ~~~~~~ryR~~~ 47 (91)
T d1fftb2 36 AVGFAWKYRASN 47 (91)
T ss_dssp HHTTTTTTTTST
T ss_pred HHhhheeeeccC
Confidence 333445555443
No 4
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.97 E-value=2.3e+02 Score=14.30 Aligned_cols=14 Identities=14% Similarity=0.852 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 042377 79 GCVIEVIYLMLYLI 92 (255)
Q Consensus 79 G~~l~~~y~~~~~~ 92 (255)
.+++++++..+|++
T Consensus 11 ac~i~lfffaiffr 24 (30)
T d2axtt1 11 ACIIALFFFAIFFR 24 (30)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhc
Confidence 44444444444443
No 5
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=4.29 E-value=5e+02 Score=18.94 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhh
Q 042377 50 VIALSSATLLLYYGL 64 (255)
Q Consensus 50 ~~~~~n~~~W~~YG~ 64 (255)
....+...+|..|+.
T Consensus 167 ~l~~~~~v~W~~YPi 181 (226)
T d1xioa_ 167 KLVTYFTVLWIGYPI 181 (226)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555677877774
No 6
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.89 E-value=1.6e+02 Score=17.82 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=16.6
Q ss_pred hhhhhhcccccccCcccccc
Q 042377 223 QKQQECTEMKMNLTEDDKAY 242 (255)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~ 242 (255)
+..+++++..+++.+++++.
T Consensus 26 k~I~~~sga~I~i~~~~~~~ 45 (74)
T d1dtja_ 26 VEYQELTGARIQISKKGEFL 45 (74)
T ss_dssp HHHHHHHCCEEEECCTTCCS
T ss_pred HHHHHHcCCEEEEccCCCCC
Confidence 67899999999998877654
No 7
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.86 E-value=1.7e+02 Score=19.66 Aligned_cols=16 Identities=19% Similarity=0.165 Sum_probs=12.7
Q ss_pred cccccccCCCCCCCCC
Q 042377 238 DDKAYTKDNNQPTDLQ 253 (255)
Q Consensus 238 ~~~~~~~~~~~~~~~~ 253 (255)
.+++-.+|++|.|.|+
T Consensus 200 Gad~n~~d~~G~TpL~ 215 (228)
T d1k1aa_ 200 GADSSLKNCHNDTPLM 215 (228)
T ss_dssp TCCTTCCCTTSCCTTT
T ss_pred CCCCCCCCCCCCCHHH
Confidence 3567778999999875
No 8
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.70 E-value=1.8e+02 Score=18.63 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=12.3
Q ss_pred cccccccCCCCCCCCC
Q 042377 238 DDKAYTKDNNQPTDLQ 253 (255)
Q Consensus 238 ~~~~~~~~~~~~~~~~ 253 (255)
.+++..+|++|.|.++
T Consensus 91 Gad~~~~d~~G~t~l~ 106 (118)
T d1myoa_ 91 GADKTVKGPDGLTALE 106 (118)
T ss_dssp CCCSSSSSSSTCCCCC
T ss_pred cccceeeCCCCCCHHH
Confidence 4667778899988775
No 9
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.99 E-value=4.5e+02 Score=14.13 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCcc
Q 042377 12 IFGLLGNIVSFLVFLAPVPTFLIIYKKKSSEGYH 45 (255)
Q Consensus 12 i~g~l~~i~ti~~~~Splp~i~~I~k~ks~~~~s 45 (255)
+-|.++..+++. +.|+.-++|+|..+.+.
T Consensus 6 v~gl~~F~~~v~-----laQi~lVlKKKQ~EkVQ 34 (37)
T d1vf5c3 6 VKWMIAFICLVM-----LAQLMLILKKKQVEKVQ 34 (37)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHTGGGCTTG
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
No 10
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.83 E-value=94 Score=16.66 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhhheEEEeCCCCCCCch
Q 042377 196 NVLGFLFGIAQMILYLVYKGKKGNESNQ 223 (255)
Q Consensus 196 N~~G~~l~~~ql~l~~~y~~~~~~~~~~ 223 (255)
|.+.+++++..+.+..+|..-.+.-+++
T Consensus 8 n~~~i~fgi~mmtliviyh~~~st~s~k 35 (36)
T d1rkla_ 8 NSLAITFGIVMMTLIVIYHAVDSTMSPK 35 (36)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTSCCCCC
T ss_pred CcEEeehhHHHHHHHHHHhhhccccCCC
Done!