Query 042378
Match_columns 55
No_of_seqs 25 out of 27
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 09:26:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2amn_A Cathelicidin; linear he 59.0 1.3 4.3E-05 22.1 -0.7 16 15-30 2-17 (26)
2 1ldd_A APC2WHB, anaphase promo 53.1 3.5 0.00012 24.0 0.4 13 14-26 5-17 (74)
3 2lnh_A N-WAsp, neural wiskott- 33.5 12 0.00041 21.1 0.6 13 36-48 33-45 (65)
4 1nkz_B Light-harvesting protei 33.3 12 0.00039 20.0 0.4 9 38-46 2-10 (41)
5 1lgh_B LH II, B800/850, light 28.7 15 0.00052 19.8 0.4 9 38-46 7-15 (45)
6 2pka_A Kallikrein A; serine pr 27.9 14 0.00048 19.4 0.2 17 18-34 11-33 (80)
7 1cee_B Wiskott-aldrich syndrom 25.5 12 0.00039 20.5 -0.4 12 36-47 44-55 (59)
8 1yn4_A EAPH1; virulence factor 24.7 26 0.00088 21.9 1.0 12 37-48 47-58 (99)
9 2kgg_A Histone demethylase jar 23.4 22 0.00076 18.3 0.5 15 36-50 33-47 (52)
10 2hfr_A Fowlicidin-3, cathelici 22.9 16 0.00054 18.1 -0.2 6 16-21 1-6 (27)
11 1yn5_A EAPH2; virulence factor 21.3 26 0.0009 22.0 0.6 12 37-48 49-60 (103)
12 4h9n_C Death domain-associated 21.0 26 0.0009 24.0 0.6 18 37-54 33-50 (212)
13 1fvi_A Chlorella virus DNA lig 20.4 29 0.00099 23.4 0.7 14 32-45 243-256 (297)
14 1vs0_A Putative DNA ligase-lik 20.4 36 0.0012 22.9 1.2 16 31-46 226-241 (310)
15 1yn3_A EAP2, truncated cell su 20.0 29 0.001 21.6 0.6 12 37-48 46-57 (98)
No 1
>2amn_A Cathelicidin; linear helix, antimicrobial protein; NMR {Synthetic}
Probab=58.99 E-value=1.3 Score=22.14 Aligned_cols=16 Identities=31% Similarity=0.742 Sum_probs=11.6
Q ss_pred hhhhcchhhhhhheee
Q 042378 15 WNRNWPFLVGFAITGT 30 (55)
Q Consensus 15 ~kr~WPFlvGf~vtg~ 30 (55)
+||+||-++-..+.|+
T Consensus 2 ~kRf~P~vi~tv~ag~ 17 (26)
T 2amn_A 2 VKRVWPLVIRTVIAGY 17 (26)
T ss_dssp CSCSCTTHHHHHHHHH
T ss_pred cceeeeeEEEEEeehh
Confidence 5899999766665554
No 2
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=53.06 E-value=3.5 Score=24.03 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=10.7
Q ss_pred hhhhhcchhhhhh
Q 042378 14 EWNRNWPFLVGFA 26 (55)
Q Consensus 14 E~kr~WPFlvGf~ 26 (55)
|.+.+|+|++|+-
T Consensus 5 ~~~v~w~yI~GML 17 (74)
T 1ldd_A 5 TLQRSLPFIEGML 17 (74)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5667999999974
No 3
>2lnh_A N-WAsp, neural wiskott-aldrich syndrome protein; protein complex, signaling protein-protein binding complex; NMR {Homo sapiens}
Probab=33.51 E-value=12 Score=21.12 Aligned_cols=13 Identities=23% Similarity=0.411 Sum_probs=10.6
Q ss_pred ecccCHhhhhCCh
Q 042378 36 SLGLTEEDAKNSP 48 (55)
Q Consensus 36 s~giTeed~knS~ 48 (55)
+.|||+||.||..
T Consensus 33 ~sGIs~~~~k~~e 45 (65)
T 2lnh_A 33 MCGISEAQLKDRE 45 (65)
T ss_dssp HHTCCHHHHTCTT
T ss_pred HcCCCHHHHHCHH
Confidence 5699999998863
No 4
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=33.25 E-value=12 Score=19.96 Aligned_cols=9 Identities=33% Similarity=0.486 Sum_probs=7.7
Q ss_pred ccCHhhhhC
Q 042378 38 GLTEEDAKN 46 (55)
Q Consensus 38 giTeed~kn 46 (55)
|+|||+.++
T Consensus 2 gLT~~EA~E 10 (41)
T 1nkz_B 2 TLTAEQSEE 10 (41)
T ss_dssp CCCHHHHHH
T ss_pred CCCHHHHHH
Confidence 899999875
No 5
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=28.66 E-value=15 Score=19.84 Aligned_cols=9 Identities=67% Similarity=0.852 Sum_probs=7.8
Q ss_pred ccCHhhhhC
Q 042378 38 GLTEEDAKN 46 (55)
Q Consensus 38 giTeed~kn 46 (55)
|+|||+.++
T Consensus 7 GLT~~EA~E 15 (45)
T 1lgh_B 7 GLTEEEAIA 15 (45)
T ss_dssp SCCHHHHHH
T ss_pred CCCHHHHHH
Confidence 899999875
No 6
>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A
Probab=27.93 E-value=14 Score=19.41 Aligned_cols=17 Identities=18% Similarity=0.483 Sum_probs=11.4
Q ss_pred hcchhhhh------hheeeeeee
Q 042378 18 NWPFLVGF------AITGTIITK 34 (55)
Q Consensus 18 ~WPFlvGf------~vtg~litK 34 (55)
-||+++.+ -+.|.||..
T Consensus 11 ~~Pw~v~l~~~~~~~CgGslIs~ 33 (80)
T 2pka_A 11 SHPWQVAIYHYSSFQCGGVLVNP 33 (80)
T ss_dssp SCTTEEEEEETTEEEEEEEEEET
T ss_pred CCCcEEEEEECCceEEEEEEEcC
Confidence 47777654 478888753
No 7
>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator GTPase and the GTPase binding domain of ITS effector WAsp; HET: GCP; NMR {Homo sapiens}
Probab=25.47 E-value=12 Score=20.48 Aligned_cols=12 Identities=17% Similarity=0.451 Sum_probs=9.4
Q ss_pred ecccCHhhhhCC
Q 042378 36 SLGLTEEDAKNS 47 (55)
Q Consensus 36 s~giTeed~knS 47 (55)
++|||++|.++.
T Consensus 44 ~sGIt~~e~k~n 55 (59)
T 1cee_B 44 RAGISEAQLTDA 55 (59)
T ss_dssp TTTSCSSCCCSS
T ss_pred HcCCCHHHHhhc
Confidence 379999988764
No 8
>1yn4_A EAPH1; virulence factor, toxin, extracellular adherence protein, unknown function; 1.80A {Staphylococcus aureus}
Probab=24.71 E-value=26 Score=21.87 Aligned_cols=12 Identities=33% Similarity=0.484 Sum_probs=10.4
Q ss_pred cccCHhhhhCCh
Q 042378 37 LGLTEEDAKNSP 48 (55)
Q Consensus 37 ~giTeed~knS~ 48 (55)
-|||++|+++|+
T Consensus 47 rgIt~~di~~ak 58 (99)
T 1yn4_A 47 RGVTTEKINNAQ 58 (99)
T ss_dssp HCCCHHHHHTSS
T ss_pred cCCCHHHHhhhh
Confidence 489999999886
No 9
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=23.36 E-value=22 Score=18.29 Aligned_cols=15 Identities=27% Similarity=0.600 Sum_probs=10.7
Q ss_pred ecccCHhhhhCChhh
Q 042378 36 SLGLTEEDAKNSPFV 50 (55)
Q Consensus 36 s~giTeed~knS~f~ 50 (55)
-+|||++..++++|+
T Consensus 33 Cvgl~~~~~~~~~~~ 47 (52)
T 2kgg_A 33 CVGVSPEMAENEDYI 47 (52)
T ss_dssp TTTCCHHHHHHSCCC
T ss_pred ccCCCccccCCCCEE
Confidence 368888877667664
No 10
>2hfr_A Fowlicidin-3, cathelicidin; alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=22.86 E-value=16 Score=18.14 Aligned_cols=6 Identities=50% Similarity=1.453 Sum_probs=4.9
Q ss_pred hhhcch
Q 042378 16 NRNWPF 21 (55)
Q Consensus 16 kr~WPF 21 (55)
||+||-
T Consensus 1 kRF~P~ 6 (27)
T 2hfr_A 1 KRFWPL 6 (27)
T ss_dssp CCSCSS
T ss_pred CCcccc
Confidence 588996
No 11
>1yn5_A EAPH2; virulence factor, toxin, extracellular adherence protein, unknown function; 2.20A {Staphylococcus aureus}
Probab=21.31 E-value=26 Score=21.98 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=10.3
Q ss_pred cccCHhhhhCCh
Q 042378 37 LGLTEEDAKNSP 48 (55)
Q Consensus 37 ~giTeed~knS~ 48 (55)
-|||++|+++|+
T Consensus 49 rgIt~~di~~ak 60 (103)
T 1yn5_A 49 RGVTPEKIRNAK 60 (103)
T ss_dssp HCCCHHHHHHSS
T ss_pred cCCCHHHhhhhh
Confidence 489999999886
No 12
>4h9n_C Death domain-associated protein 6; histone chaperone, DNA binding protein-apoptosis complex; 1.95A {Homo sapiens} PDB: 4h9o_C
Probab=21.05 E-value=26 Score=23.98 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=15.0
Q ss_pred cccCHhhhhCChhhhccc
Q 042378 37 LGLTEEDAKNSPFVQRHK 54 (55)
Q Consensus 37 ~giTeed~knS~f~~~~k 54 (55)
+.+++.|-.||.|.+.++
T Consensus 33 vd~d~ld~~dS~Yi~~~r 50 (212)
T 4h9n_C 33 LDLSELDDPDSAYLQEAR 50 (212)
T ss_dssp ECTTGGGCTTSHHHHHHH
T ss_pred cCcccccCCCCHHHHHHH
Confidence 578888889999998764
No 13
>1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A*
Probab=20.44 E-value=29 Score=23.37 Aligned_cols=14 Identities=7% Similarity=0.368 Sum_probs=12.1
Q ss_pred eeeeecccCHhhhh
Q 042378 32 ITKFSLGLTEEDAK 45 (55)
Q Consensus 32 itK~s~giTeed~k 45 (55)
+.|++-|+|||+++
T Consensus 243 ~~~vgtGftd~~~~ 256 (297)
T 1fvi_A 243 VFSIGTGFDADQRR 256 (297)
T ss_dssp CEEECSSCCHHHHH
T ss_pred EEEECCCCCHHHHH
Confidence 45898999999988
No 14
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis}
Probab=20.40 E-value=36 Score=22.95 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=13.3
Q ss_pred eeeeeecccCHhhhhC
Q 042378 31 IITKFSLGLTEEDAKN 46 (55)
Q Consensus 31 litK~s~giTeed~kn 46 (55)
-+.|++-|+||+++++
T Consensus 226 ~vgkvgtGftd~~~~~ 241 (310)
T 1vs0_A 226 FAGRVGTGLSERELAN 241 (310)
T ss_dssp EEEEECSSCCHHHHHH
T ss_pred EEEEECCCCCHHHHHH
Confidence 3558999999999986
No 15
>1yn3_A EAP2, truncated cell surface protein MAP-W; virulence-factor, toxin, extracellular-adherence protein, protein binding; 1.35A {Staphylococcus aureus}
Probab=20.00 E-value=29 Score=21.60 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=10.2
Q ss_pred cccCHhhhhCCh
Q 042378 37 LGLTEEDAKNSP 48 (55)
Q Consensus 37 ~giTeed~knS~ 48 (55)
-|||++|+++|+
T Consensus 46 rgIt~~di~~ak 57 (98)
T 1yn3_A 46 RGITDVDLRLSK 57 (98)
T ss_dssp HCCCHHHHHHSS
T ss_pred cCCCHHHhhhhh
Confidence 489999998886
Done!