Query 042381
Match_columns 353
No_of_seqs 251 out of 1474
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 05:41:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042381.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042381hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2335 Secreted and surface p 99.9 2.2E-22 4.8E-27 176.1 10.7 122 220-351 49-183 (187)
2 COG2335 Secreted and surface p 99.9 1.4E-21 3E-26 171.1 10.1 124 50-181 47-183 (187)
3 smart00554 FAS1 Four repeated 99.8 1.1E-19 2.3E-24 145.6 8.5 90 255-350 1-99 (99)
4 PF02469 Fasciclin: Fasciclin 99.8 3.8E-19 8.2E-24 148.6 9.9 111 230-349 3-128 (128)
5 KOG1437 Fasciclin and related 99.8 4.3E-18 9.4E-23 175.1 17.1 247 50-351 373-643 (682)
6 PF02469 Fasciclin: Fasciclin 99.7 1.2E-17 2.6E-22 139.5 7.9 115 61-179 2-128 (128)
7 smart00554 FAS1 Four repeated 99.7 2.8E-17 6.1E-22 131.6 8.0 92 83-180 1-99 (99)
8 KOG1437 Fasciclin and related 99.6 1.7E-14 3.7E-19 148.8 11.2 222 79-349 270-507 (682)
9 PF02680 DUF211: Uncharacteriz 19.0 52 0.0011 26.2 0.8 43 305-347 34-81 (95)
10 PF07172 GRP: Glycine rich pro 14.8 1.7E+02 0.0036 23.3 2.7 16 15-30 8-23 (95)
No 1
>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]
Probab=99.88 E-value=2.2e-22 Score=176.09 Aligned_cols=122 Identities=20% Similarity=0.265 Sum_probs=103.4
Q ss_pred HHHHHH-hcCChHHHHHHHHHHHHHHHHhhcCCCCeEEEeeCcHHHhhCChhH------------HHHHhhhcccccccc
Q 042381 220 KIIRLL-SSNGFVSFAIGLHSVIDQILEDNINLNSTTIFAPADFAVVASSSPL------------LDRIVRLHILPQRFT 286 (353)
Q Consensus 220 ~~~~~L-~~~g~~~~a~aL~~~l~~l~~~l~~~~~~TvFAPtD~Af~~~~~~~------------L~~iL~yHvvp~~~~ 286 (353)
++++.. ....|+++..+++. +++.+.|.+.|+||||||+|+||+++|... |.++|.||||+|+++
T Consensus 49 ~iV~~a~~~~~f~tl~~a~~a--a~Lv~~L~~~gp~TVFaPtn~AFa~lp~~T~~~Ll~pen~~~L~~iLtYHVv~Gk~~ 126 (187)
T COG2335 49 DIVESAANNPSFTTLVAALKA--AGLVDTLNETGPFTVFAPTNEAFAKLPAGTLDALLKPENKPLLTKILTYHVVEGKIT 126 (187)
T ss_pred HHHHHHccCcchHHHHHHHHh--hhhHHHhcCCCCeEEecCCHHHHHhCChhHHHHHhCccchhhhheeeEEEEEcCccc
Confidence 344444 45569999999976 677788888899999999999999998654 578999999999999
Q ss_pred hhhhccCCCCceeecccCCceEEEEecCCceeeEEEceEEEeccceeecCCeEEEEeCccccCCC
Q 042381 287 YKELASLPGKTLLKTLVPNQYLVISGGADFIQGFDINGVQIFAPEIFSSKQFVIHGISQAFRDSR 351 (353)
Q Consensus 287 ~~~l~~l~~g~~l~Tl~~g~~l~v~~~~~~~~~v~vn~a~I~~~di~~~~~gvVH~Id~VL~~~~ 351 (353)
.+++.+ ....+|+ +|..+.|...+++ ++||+++++.+|+..+| ||||+||.||.||.
T Consensus 127 ~~~l~~---~~~v~t~-~G~~~~i~~~~~~---~~Vn~a~v~~~di~a~N-gvIhvID~Vl~Pp~ 183 (187)
T COG2335 127 AADLKS---SGSVKTV-QGADLKIKVTGGG---VYVNDATVTIADINASN-GVIHVIDKVLIPPM 183 (187)
T ss_pred HHHhhc---cccceee-cCceEEEEEcCCc---EEEeeeEEEeccEeccC-cEEEEEeeeccCCC
Confidence 999865 3456786 7999999999887 99999999999998765 79999999999985
No 2
>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]
Probab=99.86 E-value=1.4e-21 Score=171.12 Aligned_cols=124 Identities=18% Similarity=0.183 Sum_probs=103.8
Q ss_pred hhhHHHHHHhCC-cHHHHHHHhcCc--ccccCCCCeEEEEeCCHhhhcCC--------C--ChHHHHHhhhccccCCccc
Q 042381 50 FSNASKALRRSG-FNIIATLLQVSP--EIFLSSHNSTIFAIQDSAISNTS--------L--PPWLFKKLLQYHTSPLKLS 116 (353)
Q Consensus 50 ~~~i~~~L~~~g-~t~la~ll~~~~--~~l~~~~~~TvFAPtd~Af~~~~--------~--~~~~l~~lL~yHvvp~~~~ 116 (353)
..+|++....++ |++|..+++.++ ++|.+.|+||||||+|+||.+++ + ....|+++|.|||++|+++
T Consensus 47 ~~~iV~~a~~~~~f~tl~~a~~aa~Lv~~L~~~gp~TVFaPtn~AFa~lp~~T~~~Ll~pen~~~L~~iLtYHVv~Gk~~ 126 (187)
T COG2335 47 RADIVESAANNPSFTTLVAALKAAGLVDTLNETGPFTVFAPTNEAFAKLPAGTLDALLKPENKPLLTKILTYHVVEGKIT 126 (187)
T ss_pred hhHHHHHHccCcchHHHHHHHHhhhhHHHhcCCCCeEEecCCHHHHHhCChhHHHHHhCccchhhhheeeEEEEEcCccc
Confidence 356777664444 999999999887 68999999999999999999997 2 3446889999999999999
Q ss_pred hhhhcCCCCCceeeeeecCceEEEEEccceeeEEEEeeEEEeccceeecCceEEEEeCcccCCCC
Q 042381 117 MNDLLMKPQGSCLPTFLHQKKVAITKIVVKERLIEINNVLVSRPDIFLEGSLSIHGVLEPFSSLD 181 (353)
Q Consensus 117 ~~~L~~~~~g~~~~Tll~~~~l~v~~~~~~~~~v~vn~a~V~~~di~~~g~~vVH~Id~vL~p~~ 181 (353)
.+++... ..+.| ++|..++|...++ +++||.++|+.+|+.. +||+||.||+||.||.
T Consensus 127 ~~~l~~~---~~v~t-~~G~~~~i~~~~~---~~~Vn~a~v~~~di~a-~NgvIhvID~Vl~Pp~ 183 (187)
T COG2335 127 AADLKSS---GSVKT-VQGADLKIKVTGG---GVYVNDATVTIADINA-SNGVIHVIDKVLIPPM 183 (187)
T ss_pred HHHhhcc---cccee-ecCceEEEEEcCC---cEEEeeeEEEeccEec-cCcEEEEEeeeccCCC
Confidence 9999864 34556 6899999988763 5999999999999874 4669999999999975
No 3
>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Probab=99.80 E-value=1.1e-19 Score=145.65 Aligned_cols=90 Identities=26% Similarity=0.394 Sum_probs=77.5
Q ss_pred EEEeeCcHHHhhCChh---------HHHHHhhhcccccccchhhhccCCCCceeecccCCceEEEEecCCceeeEEEceE
Q 042381 255 TIFAPADFAVVASSSP---------LLDRIVRLHILPQRFTYKELASLPGKTLLKTLVPNQYLVISGGADFIQGFDINGV 325 (353)
Q Consensus 255 TvFAPtD~Af~~~~~~---------~L~~iL~yHvvp~~~~~~~l~~l~~g~~l~Tl~~g~~l~v~~~~~~~~~v~vn~a 325 (353)
|||||+|+||++++.. .++++|+|||+|+++..++|.. +..++|+ .|..+.++..++ .+.+++|++
T Consensus 1 TvfaP~d~Af~~~~~~~~~~l~~~~~l~~ll~~Hiv~~~~~~~~l~~---~~~~~Tl-~g~~l~v~~~~~-~~~i~in~~ 75 (99)
T smart00554 1 TVFAPTDEAFQKLPPGTLNSLLADPKLKNLLLYHVVPGRLSSADLLN---GGTLPTL-AGSKLRVTRSGD-SGTVTVNGA 75 (99)
T ss_pred CEeCcCHHHHHhcCHHHHHHHhCCHHHHHHHHhcEeCceEcHHHhcc---CCccccC-CCCEEEEEEeCC-CCeEEEcce
Confidence 8999999999998653 4679999999999999999864 6788998 599999999873 123999999
Q ss_pred EEeccceeecCCeEEEEeCccccCC
Q 042381 326 QIFAPEIFSSKQFVIHGISQAFRDS 350 (353)
Q Consensus 326 ~I~~~di~~~~~gvVH~Id~VL~~~ 350 (353)
+|+.+|+.++| |+||+||+||.|+
T Consensus 76 ~v~~~di~~~n-Gvih~Id~vL~P~ 99 (99)
T smart00554 76 RIVEADIAATN-GVVHVIDRVLLPP 99 (99)
T ss_pred EEEECCEecCC-eEEEEECceeCCC
Confidence 99999998875 8999999999775
No 4
>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues. It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.
Probab=99.79 E-value=3.8e-19 Score=148.63 Aligned_cols=111 Identities=27% Similarity=0.319 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHHHHHhh-cCCCCeEEEeeCcHHHhhCCh----------hHHHHHhhhcccccccchhhhccCCCC-c
Q 042381 230 FVSFAIGLHSVIDQILEDN-INLNSTTIFAPADFAVVASSS----------PLLDRIVRLHILPQRFTYKELASLPGK-T 297 (353)
Q Consensus 230 ~~~~a~aL~~~l~~l~~~l-~~~~~~TvFAPtD~Af~~~~~----------~~L~~iL~yHvvp~~~~~~~l~~l~~g-~ 297 (353)
|+.|+.+|+. +++...+ ...+.+|||||+|+||++++. +.++++|+|||+++++..++++. + .
T Consensus 3 ~s~f~~~l~~--~~l~~~l~~~~~~~TvfaP~d~a~~~~~~~~~~~~~~~~~~l~~~l~~hiv~~~~~~~~l~~---~~~ 77 (128)
T PF02469_consen 3 LSTFSRLLEQ--AGLADLLNDSDGNYTVFAPTDDAFQKLSQETNSSLADSKEQLKSLLKYHIVPGSITSSDLRN---GKQ 77 (128)
T ss_dssp THHHHHHHHH--TTCHHHHGCSSSSEEEEEE-HHHHHHSHHHHHHHHHTHHHHHHHHHHHTEEES---HCHHHC---HHE
T ss_pred HHHHHHHHHH--cCCHHHHhcCCCCEEEEEECHHHHHhccccccchhhhhhhhHhhhhhhEEEcCceehhhhcc---ccc
Confidence 4555555554 3445556 566899999999999998742 23689999999999998888864 4 6
Q ss_pred eeecccCCceEEEEec--CCceeeEEEce-EEEeccceeecCCeEEEEeCccccC
Q 042381 298 LLKTLVPNQYLVISGG--ADFIQGFDING-VQIFAPEIFSSKQFVIHGISQAFRD 349 (353)
Q Consensus 298 ~l~Tl~~g~~l~v~~~--~~~~~~v~vn~-a~I~~~di~~~~~gvVH~Id~VL~~ 349 (353)
.++|+..|..+.++.. ++. ++||+ ++|+.+|+.+++ |+||+||+||.|
T Consensus 78 ~~~t~~~g~~~~v~~~~~~~~---~~v~~~a~i~~~~~~~~n-G~ih~id~vL~P 128 (128)
T PF02469_consen 78 TLETLLNGQPLRVSSSPSNGT---IYVNGKARIVKSDIEASN-GVIHIIDDVLIP 128 (128)
T ss_dssp EEEBSSTTCEEEEEEEGGTTE---EEECCEEEESEEEEEESS-EEEEEESS-TSS
T ss_pred cceeccCCCEEEEEEEecCCc---eEecCceEEEeCCEEeCC-EEEEEECceECc
Confidence 7898558999999997 444 99999 999999998765 899999999986
No 5
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.78 E-value=4.3e-18 Score=175.08 Aligned_cols=247 Identities=16% Similarity=0.181 Sum_probs=161.7
Q ss_pred hhhHHHHHHhCCcHHHHHHHhcCc--ccccCCCCeEEEEeCCHhhhcCCCChH---HHHHhhhccccCCccchhhhcCCC
Q 042381 50 FSNASKALRRSGFNIIATLLQVSP--EIFLSSHNSTIFAIQDSAISNTSLPPW---LFKKLLQYHTSPLKLSMNDLLMKP 124 (353)
Q Consensus 50 ~~~i~~~L~~~g~t~la~ll~~~~--~~l~~~~~~TvFAPtd~Af~~~~~~~~---~l~~lL~yHvvp~~~~~~~L~~~~ 124 (353)
..+.+++..+...+++.+++...+ ..|.+.+..|+|+|+|+||++.. +.. .++.+|.||+++-+...++..+.
T Consensus 373 ~~~l~~La~e~~~st~~rlv~elgll~~L~~n~e~t~~lp~n~~fd~~~-~~~~r~l~~qIL~~HII~~~~~~~~~y~~- 450 (682)
T KOG1437|consen 373 LKNLMSLAREDEISTSMRLVAELGLLTALAPNDEATLLLPTNNLFDDLT-PLESRRLAEQILYNHIIPEYLTSSSMYNG- 450 (682)
T ss_pred HHHHHHHHhcccccHHHHHHHhccceEEEcCCCceEEeeehhhhccCCC-hhhhHHHHHHHHHHhCcchhhhhhhhhcc-
Confidence 368888888888999999998876 34777677999999999999874 322 26889999999999998887653
Q ss_pred CCceeeeeecCceEEEEEccc----eeeEEEEee-EEEeccceeecCceEEEEeCcccCCCCCCCCCCCcccccCCCCCC
Q 042381 125 QGSCLPTFLHQKKVAITKIVV----KERLIEINN-VLVSRPDIFLEGSLSIHGVLEPFSSLDPQNIHPGWDYIQSPICDS 199 (353)
Q Consensus 125 ~g~~~~Tll~~~~l~v~~~~~----~~~~v~vn~-a~V~~~di~~~g~~vVH~Id~vL~p~~~~~~~~~~~~~~~p~~~~ 199 (353)
++.++| +.+..+.+-.+.. +...+.++| +.|...|+... +|+||.||+|+.| .++ +..+.
T Consensus 451 -~~~v~t-~g~~~l~~fv~r~~~s~~~t~i~~~~~~~Ii~aDi~~~-nGvvH~id~vl~p---~~l---~~~l~------ 515 (682)
T KOG1437|consen 451 -QTTVRT-LGKNKLLYFVYRHSVSANVTDILIGNEACIIEADISVK-NGVVHIIDRVLDP---VSL---MEDLK------ 515 (682)
T ss_pred -cceeec-cCCeEEEEEEecccccccceeeeccceeeEEeccccee-cCceEEeeEEcCc---ccH---HHHHh------
Confidence 235666 4555554444332 112344544 67778888632 4599999999987 211 11111
Q ss_pred CCCccccCcchhhhhhhhHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcCCCCeEEEeeCcHHHhhCChh--------H
Q 042381 200 FSSTLVSDITESKNMVNEWTKIIRLLSSNGFVSFAIGLHSVIDQILEDNINLNSTTIFAPADFAVVASSSP--------L 271 (353)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~a~aL~~~l~~l~~~l~~~~~~TvFAPtD~Af~~~~~~--------~ 271 (353)
....++.+..+++. .++-+++..++.||+|+|+|+||.+...+ .
T Consensus 516 --------------------------~d~r~s~~~~~le~--~~l~e~l~~~~~~t~fvPt~ka~~~~~~~~~~~~~~~~ 567 (682)
T KOG1437|consen 516 --------------------------TDGRISGTVQGLEG--VLLPEELTPEGNYTLFVPTNKAWQKSTKDEKSLFHKKA 567 (682)
T ss_pred --------------------------hccchhhhHHhhhh--cCChhhhccCCceEEEeecccccccCCcchhhcchHHH
Confidence 00112222222221 11223344578999999999999986433 2
Q ss_pred HHHHhhhcccccccchhhhccCCCCceeecc------cCCceEEEEecCCceeeEEEceEEEeccceeecCCeEEEEeCc
Q 042381 272 LDRIVRLHILPQRFTYKELASLPGKTLLKTL------VPNQYLVISGGADFIQGFDINGVQIFAPEIFSSKQFVIHGISQ 345 (353)
Q Consensus 272 L~~iL~yHvvp~~~~~~~l~~l~~g~~l~Tl------~~g~~l~v~~~~~~~~~v~vn~a~I~~~di~~~~~gvVH~Id~ 345 (353)
|..++.||++++.... ++ +.+..++ ..|..+.+...... ..+|-.+++..|+...| ||+|.||.
T Consensus 568 l~~~l~yH~v~~~~~l-s~-----~~~~~v~~~~k~s~~~~~~~~~~~~~~---~~vn~e~~~~~~i~~~n-~~~h~i~~ 637 (682)
T KOG1437|consen 568 LQDFLKYHLVPGQSRL-SL-----GSSPYVMIQVKLSLRGDHLFFSLVNPR---GDVNKERLVGIDIMGTN-GVVHVIDL 637 (682)
T ss_pred HHHHHHhccccceeee-ec-----ccccceeeeeeEEEecccEEeeeeccc---cceeeeeeeccceeeec-ceeEEEEE
Confidence 6899999999987631 11 1111222 12344444433333 67788899999999886 69999999
Q ss_pred cccCCC
Q 042381 346 AFRDSR 351 (353)
Q Consensus 346 VL~~~~ 351 (353)
||.|+.
T Consensus 638 vl~p~~ 643 (682)
T KOG1437|consen 638 VLKPPD 643 (682)
T ss_pred EcccCc
Confidence 999963
No 6
>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues. It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.
Probab=99.72 E-value=1.2e-17 Score=139.51 Aligned_cols=115 Identities=23% Similarity=0.284 Sum_probs=88.8
Q ss_pred CcHHHHHHHhcCc--ccc-cCCCCeEEEEeCCHhhhcCC--------CChHHHHHhhhccccCCccchhhhcCCCCCcee
Q 042381 61 GFNIIATLLQVSP--EIF-LSSHNSTIFAIQDSAISNTS--------LPPWLFKKLLQYHTSPLKLSMNDLLMKPQGSCL 129 (353)
Q Consensus 61 g~t~la~ll~~~~--~~l-~~~~~~TvFAPtd~Af~~~~--------~~~~~l~~lL~yHvvp~~~~~~~L~~~~~g~~~ 129 (353)
+|++|+++++.++ +.+ ...+++|||||+|+||++++ .+...++++|+||++++.+..++|... ...+
T Consensus 2 ~~s~f~~~l~~~~l~~~l~~~~~~~TvfaP~d~a~~~~~~~~~~~~~~~~~~l~~~l~~hiv~~~~~~~~l~~~--~~~~ 79 (128)
T PF02469_consen 2 DLSTFSRLLEQAGLADLLNDSDGNYTVFAPTDDAFQKLSQETNSSLADSKEQLKSLLKYHIVPGSITSSDLRNG--KQTL 79 (128)
T ss_dssp TTHHHHHHHHHTTCHHHHGCSSSSEEEEEE-HHHHHHSHHHHHHHHHTHHHHHHHHHHHTEEES---HCHHHCH--HEEE
T ss_pred CHHHHHHHHHHcCCHHHHhcCCCCEEEEEECHHHHHhccccccchhhhhhhhHhhhhhhEEEcCceehhhhccc--cccc
Confidence 6899999999887 456 45699999999999998874 123357899999999999999998852 1467
Q ss_pred eeeecCceEEEEEccceeeEEEEee-EEEeccceeecCceEEEEeCcccCC
Q 042381 130 PTFLHQKKVAITKIVVKERLIEINN-VLVSRPDIFLEGSLSIHGVLEPFSS 179 (353)
Q Consensus 130 ~Tll~~~~l~v~~~~~~~~~v~vn~-a~V~~~di~~~g~~vVH~Id~vL~p 179 (353)
+|.+.|..+.++...+ .+.++||+ ++|+..|+..+ +|+||.||+||.|
T Consensus 80 ~t~~~g~~~~v~~~~~-~~~~~v~~~a~i~~~~~~~~-nG~ih~id~vL~P 128 (128)
T PF02469_consen 80 ETLLNGQPLRVSSSPS-NGTIYVNGKARIVKSDIEAS-NGVIHIIDDVLIP 128 (128)
T ss_dssp EBSSTTCEEEEEEEGG-TTEEEECCEEEESEEEEEES-SEEEEEESS-TSS
T ss_pred eeccCCCEEEEEEEec-CCceEecCceEEEeCCEEeC-CEEEEEECceECc
Confidence 7767899999988721 34799999 99999998654 5799999999976
No 7
>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Probab=99.71 E-value=2.8e-17 Score=131.60 Aligned_cols=92 Identities=28% Similarity=0.354 Sum_probs=75.9
Q ss_pred EEEEeCCHhhhcCCCC---hH----HHHHhhhccccCCccchhhhcCCCCCceeeeeecCceEEEEEccceeeEEEEeeE
Q 042381 83 TIFAIQDSAISNTSLP---PW----LFKKLLQYHTSPLKLSMNDLLMKPQGSCLPTFLHQKKVAITKIVVKERLIEINNV 155 (353)
Q Consensus 83 TvFAPtd~Af~~~~~~---~~----~l~~lL~yHvvp~~~~~~~L~~~~~g~~~~Tll~~~~l~v~~~~~~~~~v~vn~a 155 (353)
|+|||+|+||+++... .+ .++++|+||++|+++..++|.. +..++|+ .|..++++..+. .+.+++|++
T Consensus 1 TvfaP~d~Af~~~~~~~~~~l~~~~~l~~ll~~Hiv~~~~~~~~l~~---~~~~~Tl-~g~~l~v~~~~~-~~~i~in~~ 75 (99)
T smart00554 1 TVFAPTDEAFQKLPPGTLNSLLADPKLKNLLLYHVVPGRLSSADLLN---GGTLPTL-AGSKLRVTRSGD-SGTVTVNGA 75 (99)
T ss_pred CEeCcCHHHHHhcCHHHHHHHhCCHHHHHHHHhcEeCceEcHHHhcc---CCccccC-CCCEEEEEEeCC-CCeEEEcce
Confidence 8999999999998621 11 5789999999999999999975 4567785 588999988752 247999999
Q ss_pred EEeccceeecCceEEEEeCcccCCC
Q 042381 156 LVSRPDIFLEGSLSIHGVLEPFSSL 180 (353)
Q Consensus 156 ~V~~~di~~~g~~vVH~Id~vL~p~ 180 (353)
+|+.+|+..+ +|+||+||+||.||
T Consensus 76 ~v~~~di~~~-nGvih~Id~vL~P~ 99 (99)
T smart00554 76 RIVEADIAAT-NGVVHVIDRVLLPP 99 (99)
T ss_pred EEEECCEecC-CeEEEEECceeCCC
Confidence 9999999854 57999999999874
No 8
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.55 E-value=1.7e-14 Score=148.77 Aligned_cols=222 Identities=16% Similarity=0.121 Sum_probs=137.7
Q ss_pred CCCeEEEEeCCHhhhcCCCChHHHHHhhhccccCCccchhhhcCCC-------CCceeeeeecCceEEEEEccceeeEEE
Q 042381 79 SHNSTIFAIQDSAISNTSLPPWLFKKLLQYHTSPLKLSMNDLLMKP-------QGSCLPTFLHQKKVAITKIVVKERLIE 151 (353)
Q Consensus 79 ~~~~TvFAPtd~Af~~~~~~~~~l~~lL~yHvvp~~~~~~~L~~~~-------~g~~~~Tll~~~~l~v~~~~~~~~~v~ 151 (353)
.++.|.+||+|+||.+.+ ......++.||.+.+.+......+.. .++...| ..+..+.+...| ....
T Consensus 270 ~d~rt~~a~tn~a~~~ip--~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~s~~~~~~r~~-~~~~~~a~g~~g---~~~~ 343 (682)
T KOG1437|consen 270 VDPRTHLAPTNEAFFTIP--RGYPPRILGYHLVLGNLKYNHILDNMKLGPSLAPGTVRLT-GEGVAIAPGSSG---ERYH 343 (682)
T ss_pred cccccccccCcchhhccc--ccCCCcccccccchhhhhhhhhcccccccccccccceeec-cccccccccCCC---ceEE
Confidence 478999999999998764 22344677788877776554443211 1122222 122223333332 3577
Q ss_pred EeeEEEeccceeecCceEEEEeCcccCCCCCCCCCCCcccccCCCCCCCCCccccCcchhhhhhhhHHHHHHHHhcCChH
Q 042381 152 INNVLVSRPDIFLEGSLSIHGVLEPFSSLDPQNIHPGWDYIQSPICDSFSSTLVSDITESKNMVNEWTKIIRLLSSNGFV 231 (353)
Q Consensus 152 vn~a~V~~~di~~~g~~vVH~Id~vL~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~ 231 (353)
+||..++..|...++ +++|.||.++.|+... .++++.+...-+
T Consensus 344 ~ng~~~I~kd~i~~~-~~lh~id~~l~p~~~~------------------------------------~l~~La~e~~~s 386 (682)
T KOG1437|consen 344 INGRAIIQKDFIHTN-GLLHYIDYVLEPDSLK------------------------------------NLMSLAREDEIS 386 (682)
T ss_pred eecceeEEEeeeccc-eEEEEcccccCCchHH------------------------------------HHHHHHhccccc
Confidence 888776657766543 6999999999875221 111222222222
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCeEEEeeCcHHHhhCChhH----HHHHhhhcccccccchhhhccCCCCceeecccCCce
Q 042381 232 SFAIGLHSVIDQILEDNINLNSTTIFAPADFAVVASSSPL----LDRIVRLHILPQRFTYKELASLPGKTLLKTLVPNQY 307 (353)
Q Consensus 232 ~~a~aL~~~l~~l~~~l~~~~~~TvFAPtD~Af~~~~~~~----L~~iL~yHvvp~~~~~~~l~~l~~g~~l~Tl~~g~~ 307 (353)
++...+.. .+++.-|...+.+|+|+|+|+||+.+.... ++++|+||++|.++.+++... .++.++|+ .|..
T Consensus 387 t~~rlv~e--lgll~~L~~n~e~t~~lp~n~~fd~~~~~~~r~l~~qIL~~HII~~~~~~~~~y~--~~~~v~t~-g~~~ 461 (682)
T KOG1437|consen 387 TSMRLVAE--LGLLTALAPNDEATLLLPTNNLFDDLTPLESRRLAEQILYNHIIPEYLTSSSMYN--GQTTVRTL-GKNK 461 (682)
T ss_pred HHHHHHHh--ccceEEEcCCCceEEeeehhhhccCCChhhhHHHHHHHHHHhCcchhhhhhhhhc--ccceeecc-CCeE
Confidence 22222221 122333444444999999999999976533 489999999999998887643 23377886 5655
Q ss_pred EEEEecCC----ceeeEEEce-EEEeccceeecCCeEEEEeCccccC
Q 042381 308 LVISGGAD----FIQGFDING-VQIFAPEIFSSKQFVIHGISQAFRD 349 (353)
Q Consensus 308 l~v~~~~~----~~~~v~vn~-a~I~~~di~~~~~gvVH~Id~VL~~ 349 (353)
+..-.... .+..+.++| +.|.+.|+..++ |+||.||+||.|
T Consensus 462 l~~fv~r~~~s~~~t~i~~~~~~~Ii~aDi~~~n-GvvH~id~vl~p 507 (682)
T KOG1437|consen 462 LLYFVYRHSVSANVTDILIGNEACIIEADISVKN-GVVHIIDRVLDP 507 (682)
T ss_pred EEEEEecccccccceeeeccceeeEEecccceec-CceEEeeEEcCc
Confidence 54433221 123466666 568899998875 799999999988
No 9
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=18.97 E-value=52 Score=26.18 Aligned_cols=43 Identities=19% Similarity=0.113 Sum_probs=20.8
Q ss_pred CceEEEEecCCcee--eEEEceEEEeccc---eeecCCeEEEEeCccc
Q 042381 305 NQYLVISGGADFIQ--GFDINGVQIFAPE---IFSSKQFVIHGISQAF 347 (353)
Q Consensus 305 g~~l~v~~~~~~~~--~v~vn~a~I~~~d---i~~~~~gvVH~Id~VL 347 (353)
|-++++..-+-.+. .+.|-|..|-.-+ ....-||+||.||.|-
T Consensus 34 gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg~IHSIDeVv 81 (95)
T PF02680_consen 34 GVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGGVIHSIDEVV 81 (95)
T ss_dssp EEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-EEEEEEEEE
T ss_pred eEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCCeEEeeeeee
Confidence 34455544443222 2444454443222 2234578999999874
No 10
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=14.77 E-value=1.7e+02 Score=23.25 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhhcc
Q 042381 15 FTISVVLACMAISMSL 30 (353)
Q Consensus 15 ~~~~~~l~~~~is~~~ 30 (353)
|+..++.++|.||+..
T Consensus 8 lL~l~LA~lLlisSev 23 (95)
T PF07172_consen 8 LLGLLLAALLLISSEV 23 (95)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3334444556666543
Done!