BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>042384
EKLEEDNGRERLKRHRIDVAGRVWIPDIWGQEEMLKDWIDCSAFDALLVPSGIMSARAAL
AQEGRRAHSGGLRVENRC

High Scoring Gene Products

Symbol, full name Information P value
AT3G52740 protein from Arabidopsis thaliana 2.6e-24
AT3G44450 protein from Arabidopsis thaliana 4.9e-14

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  042384
        (78 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2083243 - symbol:AT3G52740 "AT3G52740" species...   278  2.6e-24   1
TAIR|locus:2100167 - symbol:AT3G44450 "AT3G44450" species...   181  4.9e-14   1


>TAIR|locus:2083243 [details] [associations]
            symbol:AT3G52740 "AT3G52740" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0080167 "response to karrikin"
            evidence=IEP] [GO:0009744 "response to sucrose stimulus"
            evidence=RCA] [GO:0009813 "flavonoid biosynthetic process"
            evidence=RCA] [GO:0010224 "response to UV-B" evidence=RCA]
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0080167 EMBL:AL353912
            EMBL:AY052695 EMBL:AF446877 IPI:IPI00533146 PIR:T49027
            RefSeq:NP_566972.1 UniGene:At.26486 PRIDE:Q9LXJ1
            EnsemblPlants:AT3G52740.1 GeneID:824440 KEGG:ath:AT3G52740
            TAIR:At3g52740 eggNOG:NOG279330 HOGENOM:HOG000240781
            InParanoid:Q9LXJ1 OMA:NIDDTTS PhylomeDB:Q9LXJ1
            ProtClustDB:CLSN2684483 Genevestigator:Q9LXJ1 Uniprot:Q9LXJ1
        Length = 140

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 50/73 (68%), Positives = 58/73 (79%)

Query:     6 DNGRERLKRHRIDVAGRVWIPDIWGQEEMLKDWIDCSAFDALLVPSGIMSARAALAQEGR 65
             D GRERLK+HR ++AGRVWIP+IWGQEE+LKDWIDCS FD  LVP+GI SAR AL +E R
Sbjct:    64 DTGRERLKKHRREIAGRVWIPEIWGQEELLKDWIDCSTFDTCLVPAGISSARTALVEEAR 123

Query:    66 RAHSGGLRVENRC 78
             RA S    + NRC
Sbjct:   124 RAASASGGLHNRC 136


>TAIR|locus:2100167 [details] [associations]
            symbol:AT3G44450 "AT3G44450" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0080167 "response to karrikin"
            evidence=IEP] EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0080167
            EMBL:AL138641 EMBL:BT012513 EMBL:BT014814 IPI:IPI00533163
            PIR:T47435 RefSeq:NP_190031.1 UniGene:At.70200
            EnsemblPlants:AT3G44450.1 GeneID:823570 KEGG:ath:AT3G44450
            TAIR:At3g44450 eggNOG:NOG292494 HOGENOM:HOG000153231
            InParanoid:Q9M280 OMA:GSSHRKQ PhylomeDB:Q9M280
            ProtClustDB:CLSN2914794 Genevestigator:Q9M280 Uniprot:Q9M280
        Length = 116

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 42/78 (53%), Positives = 52/78 (66%)

Query:     7 NGRERLKRHRIDVAGRVWIPDIWGQEEMLKDWIDCSAFDALLVPSGIMSARAAL-AQEGR 65
             +GR+RLKRHR +VAG+V IPD WG+E +L  W+D S FDA    S I+SARAAL A  G 
Sbjct:    39 SGRDRLKRHREEVAGKVPIPDSWGKEGLLMGWMDFSTFDAAFTSSQIVSARAALMADSGD 98

Query:    66 RAHSGG-----LRVENRC 78
              A + G     LRVE+ C
Sbjct:    99 DAGARGSRPQRLRVESSC 116


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.433    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       78        78   0.00091  102 3  11 22  0.40    29
                                                     29  0.38    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  539 (57 KB)
  Total size of DFA:  110 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.36u 0.12s 8.48t   Elapsed:  00:00:00
  Total cpu time:  8.36u 0.12s 8.48t   Elapsed:  00:00:00
  Start:  Fri May 10 06:06:46 2013   End:  Fri May 10 06:06:46 2013

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