Query 042384
Match_columns 78
No_of_seqs 30 out of 32
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 09:31:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042384.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042384hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2uubn1 g.39.1.7 (N:2-61) Ribo 59.3 0.66 4.8E-05 26.9 -0.6 23 56-78 1-23 (60)
2 d1w7ja1 b.34.3.1 (A:5-62) Myos 43.7 2.1 0.00015 24.2 -0.2 20 20-39 6-28 (58)
3 d1sh0a_ e.8.1.4 (A:) Viral RNA 35.9 6.1 0.00044 28.8 1.3 22 40-61 237-258 (502)
4 d1ra6a_ e.8.1.4 (A:) Viral RNA 31.0 8.2 0.0006 27.7 1.3 22 40-61 233-254 (461)
5 d1xr5a_ e.8.1.4 (A:) Viral RNA 30.4 9.5 0.00069 27.2 1.5 21 40-60 233-253 (460)
6 d1khva_ e.8.1.4 (A:) Viral RNA 30.4 7.8 0.00057 28.1 1.1 22 39-60 245-266 (497)
7 d1br2a1 b.34.3.1 (A:34-79) Myo 27.3 6.8 0.0005 21.1 0.2 6 23-28 2-7 (46)
8 d2hhja1 c.60.1.1 (A:3-250) Pho 25.6 9.1 0.00066 23.8 0.6 26 29-59 14-39 (248)
9 d1xq9a_ c.60.1.1 (A:) Phosphog 25.5 12 0.00085 23.3 1.1 27 28-59 15-41 (241)
10 d1xr7a_ e.8.1.4 (A:) Viral RNA 22.0 13 0.00095 26.7 0.9 20 39-58 233-252 (460)
11 d1kk8a1 b.34.3.1 (A:29-76) Myo 20.6 8.9 0.00065 20.8 -0.2 7 22-28 5-11 (48)
No 1
>d2uubn1 g.39.1.7 (N:2-61) Ribosomal protein S14 {Thermus thermophilus [TaxId: 274]}
Probab=59.26 E-value=0.66 Score=26.85 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=17.1
Q ss_pred HHHHHHhcccccCCCCcccccCC
Q 042384 56 ARAALAQEGRRAHSGGLRVENRC 78 (78)
Q Consensus 56 AR~ALvae~rr~~s~~lri~~~c 78 (78)
|+.|+++...+.+..+.|+.|+|
T Consensus 1 a~~~~~~k~~~~pk~~tR~~NRC 23 (60)
T d2uubn1 1 ARKALIEKAKRTPKFKVRAYTRC 23 (60)
T ss_dssp CCGGGGGGGCSCCSSGGGCCCCC
T ss_pred CcHHHHHHHhcCCCCCcccceec
Confidence 45677777666655678999999
No 2
>d1w7ja1 b.34.3.1 (A:5-62) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}
Probab=43.67 E-value=2.1 Score=24.19 Aligned_cols=20 Identities=55% Similarity=1.130 Sum_probs=14.8
Q ss_pred hcceecCCc---cchhhhhhhhh
Q 042384 20 AGRVWIPDI---WGQEEMLKDWI 39 (78)
Q Consensus 20 aGrV~IPd~---WGqE~lLKDWi 39 (78)
.-||||||. |=.-+++||..
T Consensus 6 gtRvWiPd~e~vW~~AEl~~dyk 28 (58)
T d1w7ja1 6 YARVWIPDPEEVWKSAELLKDYK 28 (58)
T ss_dssp TCEEEEEETTTEEEEEEESSCCC
T ss_pred CcEEEEECccccEeeeEEEEEee
Confidence 468999974 77777777654
No 3
>d1sh0a_ e.8.1.4 (A:) Viral RNA polymerase {Norwalk virus [TaxId: 11983]}
Probab=35.93 E-value=6.1 Score=28.78 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=17.9
Q ss_pred ccccchhccCcchhhHHHHHHH
Q 042384 40 DCSAFDALLVPSGIMSARAALA 61 (78)
Q Consensus 40 Dcs~FDa~l~p~~i~sAR~ALv 61 (78)
|||.||+.+.|.-+..+-+-|.
T Consensus 237 DyS~FD~sl~~~v~~~~~~il~ 258 (502)
T d1sh0a_ 237 DYSRWDSTQQRAVLAAALEIMV 258 (502)
T ss_dssp EESSHHHHCCHHHHHHHHHHHH
T ss_pred eccCccCCCCHHHHHHHHHHHH
Confidence 9999999999987777766544
No 4
>d1ra6a_ e.8.1.4 (A:) Viral RNA polymerase {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
Probab=31.05 E-value=8.2 Score=27.67 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=17.1
Q ss_pred ccccchhccCcchhhHHHHHHH
Q 042384 40 DCSAFDALLVPSGIMSARAALA 61 (78)
Q Consensus 40 Dcs~FDa~l~p~~i~sAR~ALv 61 (78)
|||.||..+.|.-+..+.+-|.
T Consensus 233 DyS~FD~s~~~~v~~~~~~il~ 254 (461)
T d1ra6a_ 233 DYTGYDASLSPAWFEALKMVLE 254 (461)
T ss_dssp EESSHHHHCCHHHHHHHHHHHH
T ss_pred cccCCCCccCHHHHHHHHHHHH
Confidence 9999999998876666665444
No 5
>d1xr5a_ e.8.1.4 (A:) Viral RNA polymerase {Human rhinovirus 14, HRV-14 [TaxId: 12131]}
Probab=30.40 E-value=9.5 Score=27.16 Aligned_cols=21 Identities=38% Similarity=0.466 Sum_probs=16.0
Q ss_pred ccccchhccCcchhhHHHHHH
Q 042384 40 DCSAFDALLVPSGIMSARAAL 60 (78)
Q Consensus 40 Dcs~FDa~l~p~~i~sAR~AL 60 (78)
|||.||..+.|.-+..+.+.+
T Consensus 233 DyS~FD~s~~~~~~~~~~~il 253 (460)
T d1xr5a_ 233 DYSNFDASLSPVWFVCLEKVL 253 (460)
T ss_dssp EESSTGGGCCHHHHHHHHHHH
T ss_pred ccccccCcCCHHHHHHHHHHH
Confidence 999999999887665555544
No 6
>d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic disease virus [TaxId: 11976]}
Probab=30.39 E-value=7.8 Score=28.05 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=16.5
Q ss_pred hccccchhccCcchhhHHHHHH
Q 042384 39 IDCSAFDALLVPSGIMSARAAL 60 (78)
Q Consensus 39 iDcs~FDa~l~p~~i~sAR~AL 60 (78)
+|||.||+.+.|.-+..+-.-+
T Consensus 245 ~DyS~FDssl~~~~~~~~~~il 266 (497)
T d1khva_ 245 LDYSKWDSTMSPCVVRLAIDIL 266 (497)
T ss_dssp EEETTHHHHCCHHHHHHHHHHH
T ss_pred cccCCCCCCcCHHHHHHHHHHH
Confidence 4999999999997665555443
No 7
>d1br2a1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=27.28 E-value=6.8 Score=21.10 Aligned_cols=6 Identities=50% Similarity=1.448 Sum_probs=4.6
Q ss_pred eecCCc
Q 042384 23 VWIPDI 28 (78)
Q Consensus 23 V~IPd~ 28 (78)
|||||.
T Consensus 2 VWVPd~ 7 (46)
T d1br2a1 2 VWVPSE 7 (46)
T ss_dssp EEEECS
T ss_pred EEeeCC
Confidence 788874
No 8
>d2hhja1 c.60.1.1 (A:3-250) Phosphoglycerate mutase {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.57 E-value=9.1 Score=23.79 Aligned_cols=26 Identities=31% Similarity=0.709 Sum_probs=17.7
Q ss_pred cchhhhhhhhhccccchhccCcchhhHHHHH
Q 042384 29 WGQEEMLKDWIDCSAFDALLVPSGIMSARAA 59 (78)
Q Consensus 29 WGqE~lLKDWiDcs~FDa~l~p~~i~sAR~A 59 (78)
|..+..+.-|+ |.+|.+.|+..|+.+
T Consensus 14 ~N~~~r~~G~~-----D~~LTe~G~~QA~~l 39 (248)
T d2hhja1 14 WNKENRFCSWV-----DQKLNSEGMEEARNC 39 (248)
T ss_dssp HHHTTBCCTTS-----CCCBCHHHHHHHHHH
T ss_pred HHhcCCccCCC-----CCccCHHHHHHHHHH
Confidence 34445555665 477888888888775
No 9
>d1xq9a_ c.60.1.1 (A:) Phosphoglycerate mutase {Plasmodium falciparum [TaxId: 5833]}
Probab=25.54 E-value=12 Score=23.31 Aligned_cols=27 Identities=33% Similarity=0.574 Sum_probs=20.1
Q ss_pred ccchhhhhhhhhccccchhccCcchhhHHHHH
Q 042384 28 IWGQEEMLKDWIDCSAFDALLVPSGIMSARAA 59 (78)
Q Consensus 28 ~WGqE~lLKDWiDcs~FDa~l~p~~i~sAR~A 59 (78)
.|..+.++.-|. |.+|.+.|+..|+.+
T Consensus 15 ~~N~~~~~~G~~-----D~pLt~~G~~QA~~~ 41 (241)
T d1xq9a_ 15 TWNKENKFTGWT-----DVPLSEKGEEEAIAA 41 (241)
T ss_dssp GGGGTTBCCTTC-----CCCBCHHHHHHHHHH
T ss_pred hHHhCCceeCCC-----CCCCCHHHHHHHHHH
Confidence 355666666675 468999999999874
No 10
>d1xr7a_ e.8.1.4 (A:) Viral RNA polymerase {Human rhinovirus 16, HRV-16 [TaxId: 31708]}
Probab=22.01 E-value=13 Score=26.68 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=14.2
Q ss_pred hccccchhccCcchhhHHHH
Q 042384 39 IDCSAFDALLVPSGIMSARA 58 (78)
Q Consensus 39 iDcs~FDa~l~p~~i~sAR~ 58 (78)
.|||.||..+.|.-+..+..
T Consensus 233 ~DyS~FDss~~~~i~~~~~~ 252 (460)
T d1xr7a_ 233 FDYTNYDGSIHPIWFKALGM 252 (460)
T ss_dssp EEESSHHHHCCHHHHHHHHH
T ss_pred ccccccCCcCCHHHHHHHHH
Confidence 49999999997654444433
No 11
>d1kk8a1 b.34.3.1 (A:29-76) Myosin S1 fragment, N-terminal domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=20.62 E-value=8.9 Score=20.81 Aligned_cols=7 Identities=43% Similarity=1.293 Sum_probs=5.5
Q ss_pred ceecCCc
Q 042384 22 RVWIPDI 28 (78)
Q Consensus 22 rV~IPd~ 28 (78)
+|||||-
T Consensus 5 ~vWVPD~ 11 (48)
T d1kk8a1 5 NCWVPDE 11 (48)
T ss_dssp EEEEEET
T ss_pred eEEecCC
Confidence 6899984
Done!