BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042385
(920 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IFY|A Chain A, Structure Of Bacillus Anthracis Cofactor-Independent
Phosphoglucerate Mutase
Length = 508
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 24/173 (13%)
Query: 179 FPG---LFTRHDGVSSFFVKDTIQVDQNVSRHLVDELSRDDWNLLILHYLGLDHVGHIGG 235
FPG + V+++ +K + + + V+ LV+E+ D +++IL++ D VGH G
Sbjct: 350 FPGEERILINSPKVATYDLKPEMSIYE-VTDALVNEIENDKHDVIILNFANCDMVGHSG- 407
Query: 236 RSSLLMAPKLAEM---DEVVKMIHTSILTRENDQGWTLLVVVSDHGMTENG--NHGGSSF 290
+M P + + DE + + +IL ++ + ++ +DHG + + G
Sbjct: 408 ----MMEPTIKAVEATDECLGKVVEAILAKDG-----VALITADHGNADEELTSEGEPMT 458
Query: 291 EEADSLALFVGLRGHVSDYKSATQNTAQQVDIAPTLALLLGVPIPKNNVGVLI 343
+ F+ + V + DIAPT+ LLGV PK G I
Sbjct: 459 AHTTNPVPFIVTKNDVELREDGILG-----DIAPTMLTLLGVEQPKEMTGKTI 506
>pdb|1O99|A Chain A, Crystal Structure Of The S62a Mutant Of Phosphoglycerate
Mutase From Bacillus Stearothermophilus Complexed With
2-Phosphoglycerate
Length = 511
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 20/143 (13%)
Query: 203 NVSRHLVDELSRDDWNLLILHYLGLDHVGHIGGRSSLLMAPKLAEMDEVVKMIHTSILTR 262
V+ L+ E+ D ++ +IL+Y D VGH G + A + +DE + + +IL +
Sbjct: 378 EVTDALLKEIEADKYDAIILNYANPDMVGHSGKLEPTIKA--VEAVDECLGKVVDAILAK 435
Query: 263 ENDQGWTLLVVVSDHG-----MTENGNHGGSSFEEADSLALFVGLRGHVSDYKSATQNTA 317
+ ++ +DHG +T +G + + + + V +G ++
Sbjct: 436 -----GGIAIITADHGNADEVLTPDGK--PQTAHTTNPVPVIVTKKG------IKLRDGG 482
Query: 318 QQVDIAPTLALLLGVPIPKNNVG 340
D+APT+ LLG+P PK G
Sbjct: 483 ILGDLAPTMLDLLGLPQPKEMTG 505
>pdb|1EJJ|A Chain A, Crystal Structural Analysis Of Phosphoglycerate Mutase
Cocrystallized With 3-Phosphoglycerate
pdb|1EQJ|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From Bacillus
Stearothermophilus Complexed With 2-Phosphoglycerate
pdb|1O98|A Chain A, 1.4a Crystal Structure Of Phosphoglycerate Mutase From
Bacillus Stearothermophilus Complexed With
2-Phosphoglycerate
Length = 511
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 20/143 (13%)
Query: 203 NVSRHLVDELSRDDWNLLILHYLGLDHVGHIGGRSSLLMAPKLAEMDEVVKMIHTSILTR 262
V+ L+ E+ D ++ +IL+Y D VGH G + A + +DE + + +IL +
Sbjct: 378 EVTDALLKEIEADKYDAIILNYANPDMVGHSGKLEPTIKA--VEAVDECLGKVVDAILAK 435
Query: 263 ENDQGWTLLVVVSDHG-----MTENGNHGGSSFEEADSLALFVGLRGHVSDYKSATQNTA 317
+ ++ +DHG +T +G + + + + V +G ++
Sbjct: 436 -----GGIAIITADHGNADEVLTPDGK--PQTAHTTNPVPVIVTKKG------IKLRDGG 482
Query: 318 QQVDIAPTLALLLGVPIPKNNVG 340
D+APT+ LLG+P PK G
Sbjct: 483 ILGDLAPTMLDLLGLPQPKEMTG 505
>pdb|1N2K|A Chain A, Crystal Structure Of A Covalent Intermediate Of Endogenous
Human Arylsulfatase A
pdb|1N2L|A Chain A, Crystal Structure Of A Covalent Intermediate Of Endogenous
Human Arylsulfatase A
pdb|1AUK|A Chain A, Human Arylsulfatase A
Length = 489
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 20/107 (18%)
Query: 244 KLAEMDEVVKMIHTSILTRENDQGW---TLLVVVSDHG-----MTENGNHG------GSS 289
L E+D V + T+I D G TL++ +D+G M+ G G G++
Sbjct: 232 SLMELDAAVGTLMTAI----GDLGLLEETLVIFTADNGPETMRMSRGGCSGLLRCGKGTT 287
Query: 290 FEEADSLALFVGLRGHVSDYKSATQNTAQQVDIAPTLALLLGVPIPK 336
+E GH++ T A +D+ PTLA L G P+P
Sbjct: 288 YEGGVREPALAFWPGHIA--PGVTHELASSLDLLPTLAALAGAPLPN 332
>pdb|1E33|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant P426l
Length = 489
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 20/107 (18%)
Query: 244 KLAEMDEVVKMIHTSILTRENDQGW---TLLVVVSDHG-----MTENGNHG------GSS 289
L E+D V + T+I D G TL++ +D+G M+ G G G++
Sbjct: 232 SLMELDAAVGTLMTAI----GDLGLLEETLVIFTADNGPETMRMSRGGCSGLLRCGKGTT 287
Query: 290 FEEADSLALFVGLRGHVSDYKSATQNTAQQVDIAPTLALLLGVPIPK 336
+E GH++ T A +D+ PTLA L G P+P
Sbjct: 288 YEGGVREPALAFWPGHIA--PGVTHELASSLDLLPTLAALAGAPLPN 332
>pdb|1E2S|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69a
Length = 489
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 20/107 (18%)
Query: 244 KLAEMDEVVKMIHTSILTRENDQGW---TLLVVVSDHG-----MTENGNHG------GSS 289
L E+D V + T+I D G TL++ +D+G M+ G G G++
Sbjct: 232 SLMELDAAVGTLMTAI----GDLGLLEETLVIFTADNGPETMRMSRGGCSGLLRCGKGTT 287
Query: 290 FEEADSLALFVGLRGHVSDYKSATQNTAQQVDIAPTLALLLGVPIPK 336
+E GH++ T A +D+ PTLA L G P+P
Sbjct: 288 YEGGVREPALAFWPGHIA--PGVTHELASSLDLLPTLAALAGAPLPN 332
>pdb|1E3C|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69s Soaked
In Synthetic Substrate
Length = 489
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 20/107 (18%)
Query: 244 KLAEMDEVVKMIHTSILTRENDQGW---TLLVVVSDHG-----MTENGNHG------GSS 289
L E+D V + T+I D G TL++ +D+G M+ G G G++
Sbjct: 232 SLMELDAAVGTLMTAI----GDLGLLEETLVIFTADNGPETMRMSRGGCSGLLRCGKGTT 287
Query: 290 FEEADSLALFVGLRGHVSDYKSATQNTAQQVDIAPTLALLLGVPIPK 336
+E GH++ T A +D+ PTLA L G P+P
Sbjct: 288 YEGGVREPALAFWPGHIA--PGVTHELASSLDLLPTLAALAGAPLPN 332
>pdb|1E1Z|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69s
Length = 489
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 20/107 (18%)
Query: 244 KLAEMDEVVKMIHTSILTRENDQGW---TLLVVVSDHG-----MTENGNHG------GSS 289
L E+D V + T+I D G TL++ +D+G M+ G G G++
Sbjct: 232 SLMELDAAVGTLMTAI----GDLGLLEETLVIFTADNGPETMRMSRGGCSGLLRCGKGTT 287
Query: 290 FEEADSLALFVGLRGHVSDYKSATQNTAQQVDIAPTLALLLGVPIPK 336
+E GH++ T A +D+ PTLA L G P+P
Sbjct: 288 YEGGVREPALAFWPGHIA--PGVTHELASSLDLLPTLAALAGAPLPN 332
>pdb|2PI2|A Chain A, Full-Length Replication Protein A Subunits Rpa14 And Rpa32
pdb|2PI2|B Chain B, Full-Length Replication Protein A Subunits Rpa14 And Rpa32
pdb|2PI2|C Chain C, Full-Length Replication Protein A Subunits Rpa14 And Rpa32
pdb|2PI2|D Chain D, Full-Length Replication Protein A Subunits Rpa14 And Rpa32
pdb|2Z6K|A Chain A, Crystal Structure Of Full-Length Human Rpa1432 HETERODIMER
pdb|2Z6K|B Chain B, Crystal Structure Of Full-Length Human Rpa1432 HETERODIMER
Length = 270
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 259 ILTRENDQGWTLLVVVSDHGMTENGNHGGSSFEEADSLAL 298
+L++ N Q +S+ GM+E GN GG+SF A+ L +
Sbjct: 168 VLSKANSQPSAGRAPISNPGMSEAGNFGGNSFMPANGLTV 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,842,329
Number of Sequences: 62578
Number of extensions: 949595
Number of successful extensions: 1905
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1901
Number of HSP's gapped (non-prelim): 13
length of query: 920
length of database: 14,973,337
effective HSP length: 108
effective length of query: 812
effective length of database: 8,214,913
effective search space: 6670509356
effective search space used: 6670509356
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)