Query 042386
Match_columns 699
No_of_seqs 152 out of 343
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 05:44:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042386.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042386hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00249 Myb_DNA-binding: Myb- 98.6 3.5E-08 7.5E-13 76.8 4.1 48 600-650 1-48 (48)
2 smart00717 SANT SANT SWI3, AD 98.3 6.1E-07 1.3E-11 66.5 4.5 48 600-651 1-48 (49)
3 cd00167 SANT 'SWI3, ADA2, N-Co 98.2 1.5E-06 3.3E-11 63.6 4.3 45 602-650 1-45 (45)
4 PF13921 Myb_DNA-bind_6: Myb-l 97.9 1.5E-05 3.2E-10 64.0 4.3 43 603-650 1-43 (60)
5 PLN03212 Transcription repress 97.8 6.2E-05 1.3E-09 78.0 7.8 65 584-651 9-73 (249)
6 PLN03091 hypothetical protein; 97.3 0.00059 1.3E-08 75.6 7.5 52 597-651 11-62 (459)
7 PLN03212 Transcription repress 97.1 0.00051 1.1E-08 71.4 4.1 50 599-653 77-126 (249)
8 TIGR01557 myb_SHAQKYF myb-like 97.0 0.00077 1.7E-08 55.8 4.0 44 598-643 1-47 (57)
9 smart00213 UBQ Ubiquitin homol 96.8 0.0033 7.1E-08 49.5 5.8 62 410-476 2-63 (64)
10 PLN03091 hypothetical protein; 96.7 0.0015 3.2E-08 72.6 4.4 49 599-652 66-114 (459)
11 cd01804 midnolin_N Ubiquitin-l 96.5 0.0039 8.5E-08 53.4 4.7 65 409-478 2-66 (78)
12 cd01805 RAD23_N Ubiquitin-like 96.4 0.0069 1.5E-07 50.5 5.4 64 410-477 2-67 (77)
13 cd01792 ISG15_repeat1 ISG15 ub 96.3 0.0065 1.4E-07 52.0 4.7 70 408-479 2-71 (80)
14 cd01769 UBL Ubiquitin-like dom 96.2 0.006 1.3E-07 48.6 4.1 62 414-479 3-64 (69)
15 KOG0048 Transcription factor, 96.2 0.01 2.3E-07 60.4 6.7 62 600-669 9-70 (238)
16 cd01808 hPLIC_N Ubiquitin-like 96.2 0.0057 1.2E-07 50.9 3.8 65 409-478 1-65 (71)
17 cd01791 Ubl5 UBL5 ubiquitin-li 96.1 0.0084 1.8E-07 51.3 4.7 65 409-477 2-66 (73)
18 cd01809 Scythe_N Ubiquitin-lik 96.0 0.015 3.2E-07 47.5 5.6 66 409-478 1-66 (72)
19 PF00240 ubiquitin: Ubiquitin 95.9 0.0066 1.4E-07 49.5 3.1 55 420-478 7-61 (69)
20 cd01807 GDX_N ubiquitin-like d 95.8 0.012 2.7E-07 49.3 4.3 66 410-479 2-67 (74)
21 PF13837 Myb_DNA-bind_4: Myb/S 95.7 0.006 1.3E-07 52.0 2.1 55 600-654 1-68 (90)
22 KOG0457 Histone acetyltransfer 95.4 0.019 4.2E-07 63.8 5.1 52 602-657 74-125 (438)
23 PF13873 Myb_DNA-bind_5: Myb/S 94.8 0.023 5E-07 47.9 2.8 54 600-653 2-72 (78)
24 cd01796 DDI1_N DNA damage indu 94.7 0.032 7E-07 46.9 3.5 54 421-477 12-65 (71)
25 cd01803 Ubiquitin Ubiquitin. U 94.7 0.046 1E-06 45.0 4.4 65 410-478 2-66 (76)
26 cd01806 Nedd8 Nebb8-like ubiq 94.7 0.052 1.1E-06 44.7 4.5 64 410-477 2-65 (76)
27 cd01799 Hoil1_N Ubiquitin-like 94.4 0.037 8.1E-07 47.6 3.3 53 421-477 15-67 (75)
28 cd01812 BAG1_N Ubiquitin-like 94.4 0.069 1.5E-06 43.7 4.6 54 422-479 13-66 (71)
29 PF13325 MCRS_N: N-terminal re 94.3 0.037 8E-07 56.3 3.4 61 599-659 72-135 (199)
30 cd01793 Fubi Fubi ubiquitin-li 94.3 0.056 1.2E-06 45.5 4.0 64 411-480 3-66 (74)
31 cd01810 ISG15_repeat2 ISG15 ub 94.2 0.051 1.1E-06 45.7 3.5 63 413-479 3-65 (74)
32 cd01798 parkin_N amino-termina 94.0 0.055 1.2E-06 44.9 3.4 56 420-479 10-65 (70)
33 KOG0048 Transcription factor, 93.1 0.1 2.3E-06 53.3 4.3 49 599-652 61-109 (238)
34 cd01801 Tsc13_N Ubiquitin-like 93.1 0.071 1.5E-06 45.4 2.6 50 421-474 16-67 (77)
35 PLN02560 enoyl-CoA reductase 92.8 0.18 3.9E-06 54.0 5.7 52 421-477 16-76 (308)
36 cd01790 Herp_N Homocysteine-re 92.7 0.15 3.3E-06 45.0 4.2 62 409-472 2-65 (79)
37 cd01813 UBP_N UBP ubiquitin pr 92.5 0.078 1.7E-06 45.4 2.1 65 408-479 4-69 (74)
38 cd01795 USP48_C USP ubiquitin- 92.3 0.16 3.6E-06 47.3 3.9 57 420-479 16-72 (107)
39 cd01794 DC_UbP_C dendritic cel 91.7 0.23 4.9E-06 42.1 4.0 60 413-476 3-62 (70)
40 TIGR00601 rad23 UV excision re 91.5 0.2 4.4E-06 55.1 4.4 73 409-487 1-75 (378)
41 PF13881 Rad60-SLD_2: Ubiquiti 91.1 0.13 2.9E-06 47.7 2.2 67 408-477 4-75 (111)
42 cd01802 AN1_N ubiquitin-like d 90.9 0.36 7.7E-06 44.1 4.6 67 409-479 28-94 (103)
43 cd01789 Alp11_N Ubiquitin-like 90.8 0.38 8.2E-06 42.1 4.5 65 409-477 2-74 (84)
44 PF11543 UN_NPL4: Nuclear pore 89.9 0.11 2.4E-06 45.6 0.4 56 422-478 17-74 (80)
45 cd01800 SF3a120_C Ubiquitin-li 89.8 0.39 8.5E-06 40.8 3.7 54 422-479 11-64 (76)
46 cd01763 Sumo Small ubiquitin-r 89.7 0.89 1.9E-05 39.8 5.9 73 405-481 8-80 (87)
47 COG5114 Histone acetyltransfer 89.5 0.51 1.1E-05 51.5 5.1 69 602-674 65-136 (432)
48 PF09111 SLIDE: SLIDE; InterP 88.9 0.28 6.1E-06 46.2 2.4 54 599-652 48-112 (118)
49 cd01815 BMSC_UbP_N Ubiquitin-l 88.7 0.45 9.7E-06 41.9 3.3 58 416-477 6-68 (75)
50 KOG0049 Transcription factor, 88.5 0.24 5.2E-06 57.9 1.9 44 595-642 407-450 (939)
51 KOG0051 RNA polymerase I termi 88.2 0.44 9.4E-06 55.4 3.8 51 599-655 383-433 (607)
52 cd01797 NIRF_N amino-terminal 86.2 1.1 2.5E-05 38.7 4.3 65 411-479 3-69 (78)
53 PF10302 DUF2407: DUF2407 ubiq 85.6 1.1 2.4E-05 40.8 4.2 58 408-467 2-61 (97)
54 KOG0049 Transcription factor, 84.8 0.83 1.8E-05 53.7 3.6 50 599-652 359-408 (939)
55 KOG3391 Transcriptional co-rep 84.4 0.41 9E-06 46.7 0.9 29 452-480 104-132 (151)
56 KOG4282 Transcription factor G 82.4 1.4 3.1E-05 47.0 4.0 61 600-660 54-123 (345)
57 PF11976 Rad60-SLD: Ubiquitin- 81.1 2.7 5.9E-05 34.7 4.4 66 409-480 3-69 (72)
58 KOG0010 Ubiquitin-like protein 80.2 1.7 3.7E-05 49.6 3.9 64 408-476 15-78 (493)
59 PF14560 Ubiquitin_2: Ubiquiti 80.0 2.8 6.2E-05 36.4 4.4 67 409-476 2-75 (87)
60 PLN03142 Probable chromatin-re 79.4 1.9 4.1E-05 53.2 4.2 55 599-653 925-987 (1033)
61 PTZ00044 ubiquitin; Provisiona 79.3 2.9 6.4E-05 34.8 4.1 63 411-477 3-65 (76)
62 PF08074 CHDCT2: CHDCT2 (NUC03 75.8 1.8 3.8E-05 43.6 2.1 63 600-662 3-79 (173)
63 cd01788 ElonginB Ubiquitin-lik 67.8 6 0.00013 37.9 3.6 63 421-487 14-80 (119)
64 PLN02799 Molybdopterin synthas 64.7 19 0.0004 30.9 5.7 42 418-462 18-62 (82)
65 COG5147 REB1 Myb superfamily p 63.6 4.6 0.0001 46.6 2.3 69 599-674 290-358 (512)
66 KOG1279 Chromatin remodeling f 61.0 9.9 0.00022 43.9 4.4 46 599-649 252-297 (506)
67 TIGR01682 moaD molybdopterin c 58.9 15 0.00033 31.3 4.2 47 418-464 15-62 (80)
68 COG5259 RSC8 RSC chromatin rem 57.4 8.4 0.00018 44.2 2.9 30 599-629 278-307 (531)
69 PF12776 Myb_DNA-bind_3: Myb/S 57.2 12 0.00026 32.3 3.3 52 602-653 1-65 (96)
70 PF06487 SAP18: Sin3 associate 56.3 21 0.00045 34.1 4.9 62 418-479 36-116 (120)
71 cd00196 UBQ Ubiquitin-like pro 55.6 22 0.00048 25.3 4.0 55 417-475 6-60 (69)
72 KOG0384 Chromodomain-helicase 54.4 7.3 0.00016 49.0 2.0 39 599-637 1132-1170(1373)
73 cd00754 MoaD Ubiquitin domain 54.1 19 0.00042 30.0 4.0 46 418-463 15-61 (80)
74 PF08914 Myb_DNA-bind_2: Rap1 49.1 24 0.00052 30.3 3.7 46 600-648 2-55 (65)
75 TIGR01687 moaD_arch MoaD famil 49.0 20 0.00043 30.9 3.3 47 418-465 15-69 (88)
76 cd01814 NTGP5 Ubiquitin-like N 48.2 19 0.00042 34.3 3.3 51 425-476 22-76 (113)
77 PF04504 DUF573: Protein of un 45.0 30 0.00066 31.6 4.0 55 599-653 3-65 (98)
78 KOG2656 DNA methyltransferase 43.6 12 0.00026 42.3 1.4 51 601-652 131-187 (445)
79 COG5118 BDP1 Transcription ini 40.7 35 0.00076 38.7 4.3 57 592-653 357-413 (507)
80 KOG0051 RNA polymerase I termi 36.1 53 0.0011 39.1 5.1 74 597-674 433-531 (607)
81 PF02597 ThiS: ThiS family; I 35.5 33 0.00072 28.3 2.5 43 420-463 13-55 (77)
82 KOG0050 mRNA splicing protein 34.1 27 0.00059 40.8 2.3 43 601-647 8-50 (617)
83 KOG2623 Tyrosyl-tRNA synthetas 32.8 37 0.0008 38.7 3.1 49 414-467 386-439 (467)
84 cd01770 p47_UBX p47-like ubiqu 32.4 49 0.0011 29.0 3.2 53 423-475 19-71 (79)
85 PF08817 YukD: WXG100 protein 31.7 21 0.00046 30.7 0.8 60 420-479 14-76 (79)
86 cd01767 UBX UBX (ubiquitin reg 24.8 1.2E+02 0.0027 25.7 4.3 52 421-474 15-68 (77)
87 PF00789 UBX: UBX domain; Int 22.9 1.3E+02 0.0028 25.5 4.0 58 420-477 18-76 (82)
88 PHA02357 hypothetical protein 22.8 79 0.0017 28.6 2.7 29 422-450 25-53 (81)
89 KOG4329 DNA-binding protein [G 22.4 1E+02 0.0022 35.0 4.1 41 599-643 276-316 (445)
90 PF13019 Telomere_Sde2: Telome 21.6 1.6E+02 0.0034 29.9 4.8 32 411-442 3-38 (162)
91 KOG4495 RNA polymerase II tran 20.9 2E+02 0.0043 27.4 5.0 49 420-473 13-64 (110)
92 PRK11130 moaD molybdopterin sy 20.3 1.5E+02 0.0033 25.5 4.0 39 419-460 17-59 (81)
No 1
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.62 E-value=3.5e-08 Score=76.79 Aligned_cols=48 Identities=29% Similarity=0.552 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhch
Q 042386 600 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLV 650 (699)
Q Consensus 600 rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~ 650 (699)
|.+||.+|.+.|++||++||.++|..|..... ..||..+++++|+++.
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~---~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMP---GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHS---SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcC---CCCCHHHHHHHHHhhC
Confidence 46899999999999999999999999987532 5899999999999873
No 2
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.34 E-value=6.1e-07 Score=66.47 Aligned_cols=48 Identities=23% Similarity=0.526 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchh
Q 042386 600 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVH 651 (699)
Q Consensus 600 rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K 651 (699)
+.+||.+|.+.|+.+|++||.++|..|-.. +..||..+++++|+++.+
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~----~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKE----LPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHH----cCCCCHHHHHHHHHHHcC
Confidence 358999999999999999998899999874 358999999999999875
No 3
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.23 E-value=1.5e-06 Score=63.64 Aligned_cols=45 Identities=29% Similarity=0.630 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhch
Q 042386 602 PFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLV 650 (699)
Q Consensus 602 ~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~ 650 (699)
+||.+|.+.|+.++++||.++|..|... +..||..+++++|.++.
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~----~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKE----LPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhH----cCCCCHHHHHHHHHHhC
Confidence 5999999999999999998899999874 35599999999999873
No 4
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.89 E-value=1.5e-05 Score=64.03 Aligned_cols=43 Identities=23% Similarity=0.550 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhch
Q 042386 603 FSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLV 650 (699)
Q Consensus 603 WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~ 650 (699)
||.+|.+.|+.+|.+||. +|+.|-.. |.+||.-+++++|++.+
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~----l~~Rt~~~~~~r~~~~l 43 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAEH----LGNRTPKQCRNRWRNHL 43 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHHH----STTS-HHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHHH----HCcCCHHHHHHHHHHHC
Confidence 999999999999999995 99999764 35899999999999933
No 5
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.78 E-value=6.2e-05 Score=77.95 Aligned_cols=65 Identities=31% Similarity=0.484 Sum_probs=49.6
Q ss_pred cccccCCCcccccCCCCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchh
Q 042386 584 PVHRKSKRSEIVQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVH 651 (699)
Q Consensus 584 P~~~K~k~~e~~~RR~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K 651 (699)
||..|+.+.-.+..-++.+||.||-+.|++.|++||.++|+.|-... -..||.-+.+++|.|.+.
T Consensus 9 ~~~~~~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~---g~gRT~KQCReRW~N~L~ 73 (249)
T PLN03212 9 PVSKKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRA---GLLRCGKSCRLRWMNYLR 73 (249)
T ss_pred CCCCCCCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhh---hcCCCcchHHHHHHHhhc
Confidence 44333333222333457799999999999999999999999997531 157999999999999875
No 6
>PLN03091 hypothetical protein; Provisional
Probab=97.27 E-value=0.00059 Score=75.61 Aligned_cols=52 Identities=23% Similarity=0.395 Sum_probs=44.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchh
Q 042386 597 RRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVH 651 (699)
Q Consensus 597 RR~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K 651 (699)
.-++.+||.||-+.|++.|++||.++|..|-... -..||.-+.+++|.|.+.
T Consensus 11 klrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~---g~gRT~KQCRERW~NyLd 62 (459)
T PLN03091 11 KLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQA---GLQRCGKSCRLRWINYLR 62 (459)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhh---ccCcCcchHhHHHHhccC
Confidence 3456789999999999999999999999997531 257999999999999875
No 7
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.06 E-value=0.00051 Score=71.38 Aligned_cols=50 Identities=22% Similarity=0.374 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhcc
Q 042386 599 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTA 653 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a 653 (699)
.+.+||.||.+.|++.+.+||. +|+.|-. .|..||..++|.+|.++.+..
T Consensus 77 ~kgpWT~EED~lLlel~~~~Gn-KWs~IAk----~LpGRTDnqIKNRWns~LrK~ 126 (249)
T PLN03212 77 KRGGITSDEEDLILRLHRLLGN-RWSLIAG----RIPGRTDNEIKNYWNTHLRKK 126 (249)
T ss_pred ccCCCChHHHHHHHHHHHhccc-cHHHHHh----hcCCCCHHHHHHHHHHHHhHH
Confidence 4569999999999999999995 9999986 358899999999999877654
No 8
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.01 E-value=0.00077 Score=55.83 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=34.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCch---HHHhhhccCCCCCCCchhhh
Q 042386 598 RIRRPFSVAEVEALVQAVEKLGTGRW---RDVKLRAFDNAKHRTYVDLK 643 (699)
Q Consensus 598 R~rr~WT~eEveaLv~GVekyG~GkW---~~Il~~~~~~f~~RT~VDLK 643 (699)
|+|..||+||-+.+++||+.||.|+| +.|+.... ....|...++
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~--~~~lT~~qV~ 47 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMV--VDGLTRDQVA 47 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcC--CCCCCHHHHH
Confidence 46789999999999999999999999 99986421 1222666655
No 9
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=96.80 E-value=0.0033 Score=49.52 Aligned_cols=62 Identities=24% Similarity=0.402 Sum_probs=46.9
Q ss_pred EEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCC
Q 042386 410 KLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHD 476 (699)
Q Consensus 410 Kl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~ 476 (699)
++.||... -..-|+|+.++||+.||..+.+.. .|-- -+.-+++.|+.+.| ++||...||..+
T Consensus 2 ~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~-~~~~--~~~~L~~~g~~L~d-~~tL~~~~i~~~ 63 (64)
T smart00213 2 ELTVKTLD-GTITLEVKPSDTVSELKEKIAELT-GIPV--EQQRLIYKGKVLED-DRTLADYNIQDG 63 (64)
T ss_pred EEEEEECC-ceEEEEECCCCcHHHHHHHHHHHH-CCCH--HHEEEEECCEECCC-CCCHHHcCCcCC
Confidence 46667666 467799999999999999998875 2211 24567788988776 599999998754
No 10
>PLN03091 hypothetical protein; Provisional
Probab=96.72 E-value=0.0015 Score=72.62 Aligned_cols=49 Identities=24% Similarity=0.487 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhc
Q 042386 599 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHT 652 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~ 652 (699)
++.+||.||.+.|++.+.+||. +|+.|-. .|..||..++|.+|..+.|.
T Consensus 66 kKgpWT~EED~lLLeL~k~~Gn-KWskIAk----~LPGRTDnqIKNRWnslLKK 114 (459)
T PLN03091 66 KRGTFSQQEENLIIELHAVLGN-RWSQIAA----QLPGRTDNEIKNLWNSCLKK 114 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhCc-chHHHHH----hcCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999997 9999986 25899999999999988764
No 11
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=96.50 E-value=0.0039 Score=53.38 Aligned_cols=65 Identities=20% Similarity=0.350 Sum_probs=49.3
Q ss_pred eEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCC
Q 042386 409 VKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 409 VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
.++.||+.+=-..-|||+.+|||+.||..|-+.. .+--.-+| +...||.+.|+ ||.+.||-.+..
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~-~~~~~~qr--L~~~Gk~L~d~--~L~~~gi~~~~~ 66 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRL-KVPKERLA--LLHRETRLSSG--KLQDLGLGDGSK 66 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHh-CCChHHEE--EEECCcCCCCC--cHHHcCCCCCCE
Confidence 4677888765568899999999999999997775 34334344 46778877665 899999986654
No 12
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=96.38 E-value=0.0069 Score=50.50 Aligned_cols=64 Identities=25% Similarity=0.348 Sum_probs=49.7
Q ss_pred EEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHH--hcCccEEEEEeecccccCcchhhhhhcccCCC
Q 042386 410 KLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAI--LGGGLRVGVLLQGKKVKDDNKTLLQTGISHDN 477 (699)
Q Consensus 410 Kl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtai--lggglrVgvllqGKkV~dD~kTL~q~GIs~~~ 477 (699)
++.||.+.=.+..+||+.++||+.||..+.+.. .| -- -+.-++..||.+. |++||.+.||-.+.
T Consensus 2 ~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~-~i~~~~--~~q~L~~~G~~L~-d~~~L~~~~i~~~~ 67 (77)
T cd01805 2 KITFKTLKQQTFPIEVDPDDTVAELKEKIEEEK-GCDYPP--EQQKLIYSGKILK-DDTTLEEYKIDEKD 67 (77)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhh-CCCCCh--hHeEEEECCEEcc-CCCCHHHcCCCCCC
Confidence 567788877788899999999999999998875 11 11 1455678898885 56899999997654
No 13
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=96.27 E-value=0.0065 Score=52.00 Aligned_cols=70 Identities=19% Similarity=0.305 Sum_probs=51.3
Q ss_pred eeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 408 HVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 408 ~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
|+++.||+..=-++.|||+.++||+.||..|-++. .|--.-.|+-....||.+ +|++||.+.||..+..|
T Consensus 2 ~~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~-~i~~~~qrL~~~~~G~~L-~D~~tL~~~gi~~gs~l 71 (80)
T cd01792 2 GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKI-GVPAFQQRLAHLDSREVL-QDGVPLVSQGLGPGSTV 71 (80)
T ss_pred ceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHh-CCCHHHEEEEeccCCCCC-CCCCCHHHcCCCCCCEE
Confidence 36788888876778899999999999999998876 233344465334456644 56689999999765543
No 14
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=96.23 E-value=0.006 Score=48.60 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=45.9
Q ss_pred ceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 414 KSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 414 KSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
|++.--++.|++|.++||+.||..+.+.+. +-.. ++-++..||.+ +|+.||...||..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~-~~~~--~~~l~~~g~~l-~d~~~l~~~~v~~~~~i 64 (69)
T cd01769 3 KTLTGKTFELEVSPDDTVAELKAKIAAKEG-VPPE--QQRLIYAGKIL-KDDKTLSDYGIQDGSTL 64 (69)
T ss_pred EccCCCEEEEEECCCChHHHHHHHHHHHHC-cChH--HEEEEECCcCC-CCcCCHHHCCCCCCCEE
Confidence 344455677899999999999999999863 3222 34456777665 78899999999766544
No 15
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.21 E-value=0.01 Score=60.43 Aligned_cols=62 Identities=16% Similarity=0.273 Sum_probs=51.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhccccCccccCCCCCChHH
Q 042386 600 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQEL 669 (699)
Q Consensus 600 rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a~i~pq~rr~~~iP~el 669 (699)
+-+||.||-+.|++=|++||.|+|..|-+..- -.|+.=..-=+|-|-++ |..+++...++|-
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~g---l~R~GKSCRlRW~NyLr-----P~ikrg~fT~eEe 70 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAG---LRRCGKSCRLRWTNYLR-----PDLKRGNFSDEEE 70 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhhcC---CCccchHHHHHhhcccC-----CCccCCCCCHHHH
Confidence 57999999999999999999999999987542 18999999999999776 5666776666653
No 16
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=96.17 E-value=0.0057 Score=50.93 Aligned_cols=65 Identities=29% Similarity=0.356 Sum_probs=48.3
Q ss_pred eEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCC
Q 042386 409 VKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 409 VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
||+.||++.=.. -|||..++||+.||..|-+.. -|--.-+|+ ...||.+. |++||...||..+..
T Consensus 1 ~~i~vk~~~g~~-~l~v~~~~TV~~lK~~I~~~~-~i~~~~~~L--i~~Gk~L~-d~~tL~~~~i~~~st 65 (71)
T cd01808 1 IKVTVKTPKDKE-EIEIAEDASVKDFKEAVSKKF-KANQEQLVL--IFAGKILK-DTDTLTQHNIKDGLT 65 (71)
T ss_pred CEEEEEcCCCCE-EEEECCCChHHHHHHHHHHHh-CCCHHHEEE--EECCeEcC-CCCcHHHcCCCCCCE
Confidence 577888887764 799999999999999997765 354445554 45666655 568999999976543
No 17
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=96.12 E-value=0.0084 Score=51.35 Aligned_cols=65 Identities=11% Similarity=0.054 Sum_probs=49.6
Q ss_pred eEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCC
Q 042386 409 VKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDN 477 (699)
Q Consensus 409 VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~ 477 (699)
+++.||+.+=.++.+||+.++|||.||..|-+.. .+--.-+|. ...|| +=+|++||...||..+.
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~-~~~~~~qrL--i~~Gk-~L~D~~tL~~ygi~~~s 66 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQT-GTRPEKIVL--KKWYT-IFKDHISLGDYEIHDGM 66 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHh-CCChHHEEE--EeCCc-CCCCCCCHHHcCCCCCC
Confidence 5778888876778889999999999999998876 344444454 45676 45566899999997654
No 18
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=96.04 E-value=0.015 Score=47.46 Aligned_cols=66 Identities=21% Similarity=0.361 Sum_probs=50.2
Q ss_pred eEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCC
Q 042386 409 VKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 409 VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
+++.||.+.=...-|+|+.++||+.||..+.+.. .|--+ +.-+++.|+.+. |++||...||..+.-
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~-gi~~~--~q~L~~~g~~L~-d~~~L~~~~i~~~~~ 66 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEV-GIPVE--QQRLIYSGRVLK-DDETLSEYKVEDGHT 66 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CcCHH--HeEEEECCEECC-CcCcHHHCCCCCCCE
Confidence 3677888877788899999999999999998765 23222 344566787665 568999999987653
No 19
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=95.94 E-value=0.0066 Score=49.51 Aligned_cols=55 Identities=29% Similarity=0.457 Sum_probs=45.0
Q ss_pred eeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCC
Q 042386 420 ELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 420 EL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
.+.|||+.+.||+.||+.|.+..- |--+- .-++..|+.+ +|+.||.+.||..+..
T Consensus 7 ~~~~~v~~~~tV~~lK~~i~~~~~-~~~~~--~~L~~~G~~L-~d~~tL~~~~i~~~~~ 61 (69)
T PF00240_consen 7 TFTLEVDPDDTVADLKQKIAEETG-IPPEQ--QRLIYNGKEL-DDDKTLSDYGIKDGST 61 (69)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHT-STGGG--EEEEETTEEE-STTSBTGGGTTSTTEE
T ss_pred EEEEEECCCCCHHHhhhhcccccc-ccccc--ceeeeeeecc-cCcCcHHHcCCCCCCE
Confidence 467899999999999999998874 33333 4467788888 9999999999988763
No 20
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=95.80 E-value=0.012 Score=49.28 Aligned_cols=66 Identities=26% Similarity=0.363 Sum_probs=49.5
Q ss_pred EEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 410 KLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 410 Kl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
++.||.+.=-..-+||..+.||+.||..+.+.. .|-.+-.|+ +..||...| +.||.+.||..+..+
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~-gi~~~~q~L--~~~G~~L~d-~~~L~~~~i~~~~~l 67 (74)
T cd01807 2 FLTVKLLQGRECSLQVSEKESVSTLKKLVSEHL-NVPEEQQRL--LFKGKALAD-DKRLSDYSIGPNAKL 67 (74)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CCCHHHeEE--EECCEECCC-CCCHHHCCCCCCCEE
Confidence 455666655566789999999999999987664 455555554 678888855 599999999877654
No 21
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=95.74 E-value=0.006 Score=51.95 Aligned_cols=55 Identities=20% Similarity=0.448 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHHHH------hCC-----C--chHHHhhhccCCCCCCCchhhhhhhhhchhccc
Q 042386 600 RRPFSVAEVEALVQAVEK------LGT-----G--RWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTAR 654 (699)
Q Consensus 600 rr~WT~eEveaLv~GVek------yG~-----G--kW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a~ 654 (699)
|..||.+|+.+|++.+.. |+. + -|..|-..-...--.||..++++||+||.+.-.
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk 68 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYK 68 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 568999999999999887 221 1 499887643211127999999999999997544
No 22
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.42 E-value=0.019 Score=63.78 Aligned_cols=52 Identities=23% Similarity=0.412 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhccccCc
Q 042386 602 PFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARISP 657 (699)
Q Consensus 602 ~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a~i~p 657 (699)
-||.+|+-.|++|++.||.|||.+|-.. - ..||.=+.|+-|.+..-...+-|
T Consensus 74 ~WtadEEilLLea~~t~G~GNW~dIA~h-I---GtKtkeeck~hy~k~fv~s~~~~ 125 (438)
T KOG0457|consen 74 SWTADEEILLLEAAETYGFGNWQDIADH-I---GTKTKEECKEHYLKHFVNSPIFP 125 (438)
T ss_pred CCChHHHHHHHHHHHHhCCCcHHHHHHH-H---cccchHHHHHHHHHHHhcCcccc
Confidence 6999999999999999999999999863 3 47999999999988766555543
No 23
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=94.81 E-value=0.023 Score=47.93 Aligned_cols=54 Identities=33% Similarity=0.500 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHHHHh-----CC-----------CchHHHhhhccCCC-CCCCchhhhhhhhhchhcc
Q 042386 600 RRPFSVAEVEALVQAVEKL-----GT-----------GRWRDVKLRAFDNA-KHRTYVDLKDKWKTLVHTA 653 (699)
Q Consensus 600 rr~WT~eEveaLv~GVeky-----G~-----------GkW~~Il~~~~~~f-~~RT~VDLKDKWRNL~K~a 653 (699)
...||.+|.+.|++-|++| |. .-|..|....-... ..||..+||.+|.||...+
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~ 72 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKA 72 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 3589999999999999998 31 34999998653332 5999999999999998754
No 24
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=94.75 E-value=0.032 Score=46.92 Aligned_cols=54 Identities=11% Similarity=0.274 Sum_probs=42.3
Q ss_pred eeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCC
Q 042386 421 LFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDN 477 (699)
Q Consensus 421 L~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~ 477 (699)
.-|||..++||+.||..|.+.. -|--.-.| ++..||...||.+||...||-.+.
T Consensus 12 ~~l~v~~~~TV~~lK~~I~~~~-gip~~~q~--Li~~Gk~L~D~~~~L~~~gi~~~~ 65 (71)
T cd01796 12 FSLDVDPDLELENFKALCEAES-GIPASQQQ--LIYNGRELVDNKRLLALYGVKDGD 65 (71)
T ss_pred EEEEECCcCCHHHHHHHHHHHh-CCCHHHeE--EEECCeEccCCcccHHHcCCCCCC
Confidence 5689999999999999986553 33334444 467899998888999999998764
No 25
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=94.72 E-value=0.046 Score=45.02 Aligned_cols=65 Identities=17% Similarity=0.367 Sum_probs=44.3
Q ss_pred EEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCC
Q 042386 410 KLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 410 Kl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
++.||++.=-.+.|||+.+.||+.||..|.+.. .+--. +.-+.+.|+.+. |++||.+.||..+..
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~-g~~~~--~q~L~~~g~~L~-d~~~L~~~~i~~~~~ 66 (76)
T cd01803 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPD--QQRLIFAGKQLE-DGRTLSDYNIQKEST 66 (76)
T ss_pred EEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHh-CCCHH--HeEEEECCEECC-CCCcHHHcCCCCCCE
Confidence 345555543345689999999999999998876 12112 233456777665 568999999977643
No 26
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=94.65 E-value=0.052 Score=44.74 Aligned_cols=64 Identities=25% Similarity=0.363 Sum_probs=47.5
Q ss_pred EEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCC
Q 042386 410 KLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDN 477 (699)
Q Consensus 410 Kl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~ 477 (699)
++.||++.=-+.-+||+.+.||+.||..+.+.. .|--+-.| ++..|+.+. |++||...||..+.
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~-g~~~~~qr--L~~~g~~L~-d~~tl~~~~i~~g~ 65 (76)
T cd01806 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKE-GIPPQQQR--LIYSGKQMN-DDKTAADYKLEGGS 65 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhh-CCChhhEE--EEECCeEcc-CCCCHHHcCCCCCC
Confidence 566777654556689999999999999998765 34444444 457787775 55899999988764
No 27
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=94.43 E-value=0.037 Score=47.64 Aligned_cols=53 Identities=23% Similarity=0.362 Sum_probs=42.1
Q ss_pred eeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCC
Q 042386 421 LFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDN 477 (699)
Q Consensus 421 L~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~ 477 (699)
+-|||+.+.||+.||..+. ..+.|--.-.|+ ..|+...||++||.+.||..++
T Consensus 15 ~~l~v~~~~TV~~lK~kI~-~~~gip~~~QrL---~~G~~L~dD~~tL~~ygi~~~g 67 (75)
T cd01799 15 IWLTVRPDMTVAQLKDKVF-LDYGFPPAVQRW---VIGQRLARDQETLYSHGIRTNG 67 (75)
T ss_pred EEEEECCCCcHHHHHHHHH-HHHCcCHHHEEE---EcCCeeCCCcCCHHHcCCCCCC
Confidence 4589999999999999885 445554455566 6899999999999999998553
No 28
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=94.36 E-value=0.069 Score=43.65 Aligned_cols=54 Identities=20% Similarity=0.345 Sum_probs=39.7
Q ss_pred eEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 422 FIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 422 ~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
-|||+.++||+.||..+.+.. .|--.-. -+++.|+.+. |++||...||..+..|
T Consensus 13 ~i~v~~~~tv~~lK~~i~~~~-gi~~~~q--~L~~~g~~l~-d~~~L~~~~i~~g~~l 66 (71)
T cd01812 13 DLSISSQATFGDLKKMLAPVT-GVEPRDQ--KLIFKGKERD-DAETLDMSGVKDGSKV 66 (71)
T ss_pred EEEECCCCcHHHHHHHHHHhh-CCChHHe--EEeeCCcccC-ccCcHHHcCCCCCCEE
Confidence 378999999999999997654 3333333 4567787765 6799999999776554
No 29
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=94.31 E-value=0.037 Score=56.31 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=53.1
Q ss_pred CCCCCCHHHHHHHHHHHHHh--CCCchHHHhhhccCCC-CCCCchhhhhhhhhchhccccCccc
Q 042386 599 IRRPFSVAEVEALVQAVEKL--GTGRWRDVKLRAFDNA-KHRTYVDLKDKWKTLVHTARISPQQ 659 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVeky--G~GkW~~Il~~~~~~f-~~RT~VDLKDKWRNL~K~a~i~pq~ 659 (699)
.+-+||.+|.+.|..+.... +...+.+|+..+...| ..||.-.|.+.|+.|.++.-++-|.
T Consensus 72 ~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~DQ~ 135 (199)
T PF13325_consen 72 SKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLPDQS 135 (199)
T ss_pred ccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhhccc
Confidence 56799999999999987766 4578999999998889 6799999999999999988887553
No 30
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=94.31 E-value=0.056 Score=45.47 Aligned_cols=64 Identities=25% Similarity=0.254 Sum_probs=44.7
Q ss_pred EEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCCC
Q 042386 411 LRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQKD 480 (699)
Q Consensus 411 l~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ld 480 (699)
+.||..+ ..-+||..+.||+.||..|-+.. .|--.-.| ++..||.+.|| .||.+.||..+..|+
T Consensus 3 i~vk~~~--~~~l~v~~~~tV~~lK~~i~~~~-gip~~~q~--Li~~Gk~L~D~-~tL~~~~i~~~~tl~ 66 (74)
T cd01793 3 LFVRAQN--THTLEVTGQETVSDIKAHVAGLE-GIDVEDQV--LLLAGVPLEDD-ATLGQCGVEELCTLE 66 (74)
T ss_pred EEEECCC--EEEEEECCcCcHHHHHHHHHhhh-CCCHHHEE--EEECCeECCCC-CCHHHcCCCCCCEEE
Confidence 4455542 35689999999999999886653 23333333 56778877655 999999998766553
No 31
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=94.18 E-value=0.051 Score=45.69 Aligned_cols=63 Identities=17% Similarity=0.264 Sum_probs=43.8
Q ss_pred EceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 413 IKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 413 IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
||++.=-..-|||..++||+.||..+-+.. .|--.-.| .+..||...| ++||.+.||..+.-|
T Consensus 3 vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~-gi~~~~q~--L~~~G~~L~D-~~tL~~~~i~~~~tl 65 (74)
T cd01810 3 VRNDKGRSSIYEVQLTQTVATLKQQVSQRE-RVQADQFW--LSFEGRPMED-EHPLGEYGLKPGCTV 65 (74)
T ss_pred EECCCCCEEEEEECCcChHHHHHHHHHHHh-CCCHHHeE--EEECCEECCC-CCCHHHcCCCCCCEE
Confidence 344444455699999999999999986543 34334444 3567777765 599999999876644
No 32
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=94.03 E-value=0.055 Score=44.85 Aligned_cols=56 Identities=18% Similarity=0.321 Sum_probs=42.2
Q ss_pred eeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 420 ELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 420 EL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
.+.|||.++.||+.||..+.+.. .|-..-.| ++..||.+ +|+.||.+.||..+..|
T Consensus 10 ~~~~~v~~~~tV~~lK~~i~~~~-gi~~~~q~--Li~~G~~L-~d~~~l~~~~i~~~stl 65 (70)
T cd01798 10 TFPVEVDPDTDIKQLKEVVAKRQ-GVPPDQLR--VIFAGKEL-RNTTTIQECDLGQQSIL 65 (70)
T ss_pred EEEEEECCCChHHHHHHHHHHHH-CCCHHHeE--EEECCeEC-CCCCcHHHcCCCCCCEE
Confidence 46689999999999999997664 33333444 46777777 56699999999877654
No 33
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=93.14 E-value=0.1 Score=53.28 Aligned_cols=49 Identities=27% Similarity=0.438 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhc
Q 042386 599 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHT 652 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~ 652 (699)
++..||+||++.|+++-.+||- +|+.|-. .+..||--++|--|.+-+|.
T Consensus 61 krg~fT~eEe~~Ii~lH~~~GN-rWs~IA~----~LPGRTDNeIKN~Wnt~lkk 109 (238)
T KOG0048|consen 61 KRGNFSDEEEDLIIKLHALLGN-RWSLIAG----RLPGRTDNEVKNHWNTHLKK 109 (238)
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-HHHHHHh----hCCCcCHHHHHHHHHHHHHH
Confidence 5779999999999999999998 8999986 36899999999999766543
No 34
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=93.08 E-value=0.071 Score=45.43 Aligned_cols=50 Identities=26% Similarity=0.407 Sum_probs=34.6
Q ss_pred eeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEE--eecccccCcchhhhhhccc
Q 042386 421 LFIELPETATVGSLKRRVMEAVNAILGGGLRVGVL--LQGKKVKDDNKTLLQTGIS 474 (699)
Q Consensus 421 L~IeiPEtATVgSLKrtVmeavtailggglrVgvl--lqGKkV~dD~kTL~q~GIs 474 (699)
+-++ |.+|||+.||..+.++...+-- -|.++. -.|+.+. |++||.+.||.
T Consensus 16 ~~~~-~~~aTV~dlk~~i~~~~~~~~~--~Rqrl~~~~~g~~L~-d~~tL~~~gv~ 67 (77)
T cd01801 16 LKVS-SGDATIADLKKLIAKSSPQLTV--NRQSLRLEPKGKSLK-DDDTLVDLGVG 67 (77)
T ss_pred cccC-CCCccHHHHHHHHHHHcCCCCc--ceeEEEeCCCCcccC-CcccHhhcCCC
Confidence 3445 8999999999999988621111 244443 4677665 66799999994
No 35
>PLN02560 enoyl-CoA reductase
Probab=92.79 E-value=0.18 Score=54.04 Aligned_cols=52 Identities=33% Similarity=0.448 Sum_probs=40.2
Q ss_pred eeEEcCCcchhhhHHHHHHHHHHHHhcCc---cEEEEEee---cc---cccCcchhhhhhcccCCC
Q 042386 421 LFIELPETATVGSLKRRVMEAVNAILGGG---LRVGVLLQ---GK---KVKDDNKTLLQTGISHDN 477 (699)
Q Consensus 421 L~IeiPEtATVgSLKrtVmeavtailggg---lrVgvllq---GK---kV~dD~kTL~q~GIs~~~ 477 (699)
..||||.+|||++||..+.++. |. =|..+.++ || ++-+|++||.+.||..+.
T Consensus 16 ~~lev~~~aTV~dLK~~Isk~~-----~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gs 76 (308)
T PLN02560 16 GGLEVPDSATVADLKKAIHKRK-----KKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGG 76 (308)
T ss_pred eeEEcCCCCcHHHHHHHHHHHc-----CCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCc
Confidence 4699999999999999999986 43 36666663 43 355788999999996554
No 36
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=92.73 E-value=0.15 Score=45.02 Aligned_cols=62 Identities=23% Similarity=0.122 Sum_probs=44.1
Q ss_pred eEEEEceeec--CeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhc
Q 042386 409 VKLRIKSFRV--PELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTG 472 (699)
Q Consensus 409 VKl~IKSf~v--PEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~G 472 (699)
+.|.||+-.= .++-||+++++||+-||..+.+..-..-. --+--.+..||-. +|..||.+.+
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~-~~~QrLIy~GKiL-kD~~tL~~~~ 65 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPL-EQDQRLIYSGKLL-PDHLKLRDVL 65 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCC-hhHeEEEEcCeec-cchhhHHHHh
Confidence 6788998544 44778889999999999988775511111 1234577888866 5669999886
No 37
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=92.50 E-value=0.078 Score=45.36 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=44.9
Q ss_pred eeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEE-eecccccCcchhhhhhcccCCCCC
Q 042386 408 HVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVL-LQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 408 ~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvl-lqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
+|||.=+.|. |||++++||+.||..+.+.. .|.-.-.++=.+ +.|| +-+|+.||...||..+..+
T Consensus 4 ~vk~~g~~~~-----v~v~~~~Tv~~lK~~i~~~t-gvp~~~QKLi~~~~~Gk-~l~D~~~L~~~~i~~g~~i 69 (74)
T cd01813 4 IVKWGGQEYS-----VTTLSEDTVLDLKQFIKTLT-GVLPERQKLLGLKVKGK-PAEDDVKISALKLKPNTKI 69 (74)
T ss_pred EEEECCEEEE-----EEECCCCCHHHHHHHHHHHH-CCCHHHEEEEeecccCC-cCCCCcCHHHcCCCCCCEE
Confidence 4777666664 69999999999999998875 233333332111 3565 5667899999999866543
No 38
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=92.28 E-value=0.16 Score=47.28 Aligned_cols=57 Identities=23% Similarity=0.240 Sum_probs=44.0
Q ss_pred eeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 420 ELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 420 EL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
|+-++|..+||||+||--||.+..-.=. .=-.+..|+-.-||.+||.--||..+-.|
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~---dQkL~~dG~~L~DDsrTLssyGv~sgSvl 72 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPF---DQNLSIDGKILSDDCATLGTLGVIPESVI 72 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcc---cceeeecCceeccCCccHHhcCCCCCCEE
Confidence 7889999999999999999998721100 11244558888999999999999877654
No 39
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=91.75 E-value=0.23 Score=42.13 Aligned_cols=60 Identities=23% Similarity=0.319 Sum_probs=40.0
Q ss_pred EceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCC
Q 042386 413 IKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHD 476 (699)
Q Consensus 413 IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~ 476 (699)
||.+.=...-+||..++||+.||..|-+.- .|--...| ++..|| +-+|+.||.+.||..+
T Consensus 3 vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~-gi~~~~q~--Li~~G~-~L~D~~~l~~~~i~~~ 62 (70)
T cd01794 3 VRLSTGKDVKLSVSSKDTVGQLKKQLQAAE-GVDPCCQR--WFFSGK-LLTDKTRLQETKIQKD 62 (70)
T ss_pred EEcCCCCEEEEEECCcChHHHHHHHHHHHh-CCCHHHeE--EEECCe-ECCCCCCHHHcCCCCC
Confidence 344444456689999999999999986642 12222233 345565 5567799999998743
No 40
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.54 E-value=0.2 Score=55.10 Aligned_cols=73 Identities=19% Similarity=0.299 Sum_probs=52.2
Q ss_pred eEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHH--HHhcCccEEEEEeecccccCcchhhhhhcccCCCCCCCccccc
Q 042386 409 VKLRIKSFRVPELFIELPETATVGSLKRRVMEAVN--AILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQKDVLGFSL 486 (699)
Q Consensus 409 VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavt--ailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ld~lgf~L 486 (699)
+|+.||.+.=-...|||..+.||+.||..|-+.-. ++--..+| +++.||.+. |++||...||..++ .|=+|+
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~Qk--LIy~GkiL~-Dd~tL~dy~I~e~~---~Ivvmv 74 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQK--LIYSGKILS-DDKTVREYKIKEKD---FVVVMV 74 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeE--EEECCEECC-CCCcHHHcCCCCCC---EEEEEe
Confidence 47888888877788999999999999999976431 12223333 577888775 55799999997544 344555
Q ss_pred c
Q 042386 487 E 487 (699)
Q Consensus 487 E 487 (699)
-
T Consensus 75 ~ 75 (378)
T TIGR00601 75 S 75 (378)
T ss_pred c
Confidence 3
No 41
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=91.15 E-value=0.13 Score=47.69 Aligned_cols=67 Identities=19% Similarity=0.315 Sum_probs=44.1
Q ss_pred eeEEEEceee-cCeeeEEcCCcchhhhHHHHHHHH----HHHHhcCccEEEEEeecccccCcchhhhhhcccCCC
Q 042386 408 HVKLRIKSFR-VPELFIELPETATVGSLKRRVMEA----VNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDN 477 (699)
Q Consensus 408 ~VKl~IKSf~-vPEL~IeiPEtATVgSLKrtVmea----vtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~ 477 (699)
+|||++-+=. |-++- .+.+.||+.||..|++- ....-..--.|-++..|| |=+|++||.+.++..++
T Consensus 4 ~lkf~l~~G~d~~~~~--~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~Gr-iL~d~~tL~~~~~~~~~ 75 (111)
T PF13881_consen 4 ELKFRLADGKDIGPFR--FDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGR-ILEDNKTLSDCRLPSGE 75 (111)
T ss_dssp EEEEEETTS-EEEEEE--E-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTE-EE-SSSBTGGGT--TTS
T ss_pred EEEEEEeCCCcccccc--cCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCe-ecCCcCcHHHhCCCCCC
Confidence 5888888777 66665 45699999999999831 111122334467899999 66799999998665544
No 42
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=90.89 E-value=0.36 Score=44.08 Aligned_cols=67 Identities=16% Similarity=0.142 Sum_probs=49.8
Q ss_pred eEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 409 VKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 409 VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
.++.||...=-.+-|||..++||+.||..|.+.. .|--+-.|+ +..||.+. |+.||...||..+..|
T Consensus 28 M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~-gip~~~QrL--i~~Gk~L~-D~~tL~dy~I~~~stL 94 (103)
T cd01802 28 MELFIETLTGTCFELRVSPFETVISVKAKIQRLE-GIPVAQQHL--IWNNMELE-DEYCLNDYNISEGCTL 94 (103)
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHh-CCChHHEEE--EECCEECC-CCCcHHHcCCCCCCEE
Confidence 6778888776778899999999999999998764 233333443 45666664 5589999999776644
No 43
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=90.79 E-value=0.38 Score=42.07 Aligned_cols=65 Identities=25% Similarity=0.316 Sum_probs=45.7
Q ss_pred eEEEEce---eecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecc-----cccCcchhhhhhcccCCC
Q 042386 409 VKLRIKS---FRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGK-----KVKDDNKTLLQTGISHDN 477 (699)
Q Consensus 409 VKl~IKS---f~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGK-----kV~dD~kTL~q~GIs~~~ 477 (699)
|++.|+| ...+| +.+|.+.||+.||..+ +.++-+--+-.|+ ++..|+ .+-||.++|-.-||..+.
T Consensus 2 v~v~i~~~~~~~~~e--kr~~~~~Tv~~lK~kl-~~~~G~~~~~mrL-~l~~~~~~~~~~l~~d~~~L~~y~~~dg~ 74 (84)
T cd01789 2 VTVNITSSADSFSFE--KKYSRGLTIAELKKKL-ELVVGTPASSMRL-QLFDGDDKLVSKLDDDDALLGSYPVDDGC 74 (84)
T ss_pred EEEEEEeCCCceeee--EecCCCCcHHHHHHHH-HHHHCCCccceEE-EEEcCCCCeEeecCCCccEeeeccCCCCC
Confidence 5566666 23333 4599999999999988 5556665556666 445666 367899999888887654
No 44
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=89.86 E-value=0.11 Score=45.59 Aligned_cols=56 Identities=25% Similarity=0.382 Sum_probs=31.2
Q ss_pred eEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecc-cc-cCcchhhhhhcccCCCC
Q 042386 422 FIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGK-KV-KDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 422 ~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGK-kV-~dD~kTL~q~GIs~~~~ 478 (699)
-|||+.++||+.|+..|.|... |=-.++.+..--+++ .+ -++++||.+.||.|++-
T Consensus 17 Rie~~~~~t~~~L~~kI~~~l~-~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdm 74 (80)
T PF11543_consen 17 RIEVSPSSTLSDLKEKISEQLS-IPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDM 74 (80)
T ss_dssp EEEE-TTSBHHHHHHHHHHHS----TTT---BSSGGGGGCSSS-TT-CCCCT---TT-E
T ss_pred EEEcCCcccHHHHHHHHHHHcC-CCCcceEEEecCCCCcccccCCcCCHHHcCCCCccE
Confidence 4789999999999999999873 333344332222232 33 37899999999999874
No 45
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=89.84 E-value=0.39 Score=40.78 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=38.7
Q ss_pred eEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 422 FIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 422 ~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
-|||+.++||+.||..|.+.+ .|--.- .-+++.|+.. +|++||...||..+..+
T Consensus 11 ~l~v~~~~TV~~lK~~i~~~~-gip~~~--q~L~~~G~~L-~d~~tL~~~~i~~g~~l 64 (76)
T cd01800 11 NFTLQLSDPVSVLKVKIHEET-GMPAGK--QKLQYEGIFI-KDSNSLAYYNLANGTII 64 (76)
T ss_pred EEEECCCCcHHHHHHHHHHHH-CCCHHH--EEEEECCEEc-CCCCcHHHcCCCCCCEE
Confidence 389999999999999997654 332222 3356677654 55699999999876543
No 46
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=89.70 E-value=0.89 Score=39.80 Aligned_cols=73 Identities=18% Similarity=0.369 Sum_probs=59.9
Q ss_pred CCceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCCCC
Q 042386 405 RDSHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQKDV 481 (699)
Q Consensus 405 ~d~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ld~ 481 (699)
...+|.+.+++-.=.++.++|-.|+|+..||..+-+.. .|=-. .+-++.+|+.+.|+ .|+.+.||-.++-+|.
T Consensus 8 ~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~-gi~~~--~~rf~f~G~~L~~~-~T~~~l~m~d~d~I~v 80 (87)
T cd01763 8 ISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQ-GLSMN--SVRFLFDGQRIRDN-QTPDDLGMEDGDEIEV 80 (87)
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHh-CCCcc--ceEEEECCeECCCC-CCHHHcCCCCCCEEEE
Confidence 34579999999999999999999999999999888876 22222 66789999999865 7999999988765553
No 47
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=89.47 E-value=0.51 Score=51.48 Aligned_cols=69 Identities=22% Similarity=0.431 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhccccCccc--cCCCCCCh-HHHHHHH
Q 042386 602 PFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARISPQQ--RRGEPVPQ-ELLDRVL 674 (699)
Q Consensus 602 ~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a~i~pq~--rr~~~iP~-ell~RV~ 674 (699)
-|+..|+-.|++|.+.+|.|+|.+|-. +. ..|+.-++|+.|--+.--+...|.- .-..++|+ +|++|-+
T Consensus 65 ~WgadEEllli~~~~TlGlGNW~dIad-yi---Gsr~kee~k~HylK~y~es~~ypl~~i~~~~~v~q~~f~~qrr 136 (432)
T COG5114 65 GWGADEELLLIECLDTLGLGNWEDIAD-YI---GSRAKEEIKSHYLKMYDESKYYPLPDITQNIHVPQDEFLEQRR 136 (432)
T ss_pred CcCchHHHHHHHHHHhcCCCcHHHHHH-HH---hhhhhHHHHHHHHHHHhhcccccccccccCCCCchHHHHHHHH
Confidence 699999999999999999999999975 43 4799999999997776545554442 33445665 4555544
No 48
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=88.93 E-value=0.28 Score=46.19 Aligned_cols=54 Identities=30% Similarity=0.448 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CchHHHhhhc-------cCC-CCCCCchhhhhhhhhchhc
Q 042386 599 IRRPFSVAEVEALVQAVEKLGT---GRWRDVKLRA-------FDN-AKHRTYVDLKDKWKTLVHT 652 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~---GkW~~Il~~~-------~~~-f~~RT~VDLKDKWRNL~K~ 652 (699)
..+.||.+|-..|+--+.+||. |.|..|+..- |+- |..||+.+|..+=.+|++.
T Consensus 48 ~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~ 112 (118)
T PF09111_consen 48 KKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL 112 (118)
T ss_dssp S-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999 9999998643 332 2899999999998888764
No 49
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=88.65 E-value=0.45 Score=41.91 Aligned_cols=58 Identities=24% Similarity=0.348 Sum_probs=40.5
Q ss_pred eecCeeeE--EcCCcchhhhHHHHHHHHHHHHhcCcc---EEEEEeecccccCcchhhhhhcccCCC
Q 042386 416 FRVPELFI--ELPETATVGSLKRRVMEAVNAILGGGL---RVGVLLQGKKVKDDNKTLLQTGISHDN 477 (699)
Q Consensus 416 f~vPEL~I--eiPEtATVgSLKrtVmeavtailgggl---rVgvllqGKkV~dD~kTL~q~GIs~~~ 477 (699)
|..||.-. --|-++||+.||..|-+..- .|.. +..++..||.. +|++||...||-.+.
T Consensus 6 ~~~~~~~~~~~~~~~~TV~~LK~kI~~~~~---egi~~~dqQrLIy~GKiL-~D~~TL~dygI~~gs 68 (75)
T cd01815 6 FPFPEVELGDVSPGGYQVSTLKQLIAAQLP---DSLPDPELIDLIHCGRKL-KDDQTLDFYGIQSGS 68 (75)
T ss_pred ccCCCCCCCCcCCccCcHHHHHHHHHHhhc---cCCCChHHeEEEeCCcCC-CCCCcHHHcCCCCCC
Confidence 55565322 24899999999999887750 1233 45567778865 667999999998664
No 50
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=88.46 E-value=0.24 Score=57.89 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=35.3
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhh
Q 042386 595 VQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDL 642 (699)
Q Consensus 595 ~~RR~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDL 642 (699)
.++-+.-+||..|.|.|+..|++||.|+|.+|-.. +.+||.-+|
T Consensus 407 ~~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~----Lp~~t~~q~ 450 (939)
T KOG0049|consen 407 NRSAKVERWTLVEDEQLLYAVKVYGKGNWAKCAML----LPKKTSRQL 450 (939)
T ss_pred HHhhccCceeecchHHHHHHHHHHccchHHHHHHH----ccccchhHH
Confidence 34556679999999999999999999999999752 466777443
No 51
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=88.22 E-value=0.44 Score=55.43 Aligned_cols=51 Identities=24% Similarity=0.457 Sum_probs=45.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhcccc
Q 042386 599 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARI 655 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a~i 655 (699)
.+-.||.+|.+.|..-|.++|. .|+.|-.. -.|.+.|-.|+||+.++.+.-
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~-----lgr~P~~crd~wr~~~~~g~~ 433 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGKA-----LGRMPMDCRDRWRQYVKCGSK 433 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcc-cHHHHHHH-----HccCcHHHHHHHHHhhccccc
Confidence 4568999999999999999997 99999764 459999999999999997754
No 52
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=86.15 E-value=1.1 Score=38.67 Aligned_cols=65 Identities=17% Similarity=0.368 Sum_probs=45.3
Q ss_pred EEEceeecCee-eEE-cCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 411 LRIKSFRVPEL-FIE-LPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 411 l~IKSf~vPEL-~Ie-iPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
+.||.+.=-++ .|+ +..+.||+.||..|-++. .|--+-.|. +..||-. +|+.||...||..+..+
T Consensus 3 I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~-gi~~~~QrL--i~~Gk~L-~D~~tL~~y~i~~~~~i 69 (78)
T cd01797 3 IQVRTMDGKETRTVDSLSRLTKVEELREKIQELF-NVEPECQRL--FYRGKQM-EDGHTLFDYNVGLNDII 69 (78)
T ss_pred EEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHh-CCCHHHeEE--EeCCEEC-CCCCCHHHcCCCCCCEE
Confidence 44555544454 474 889999999999998764 344455553 4556555 77899999999876543
No 53
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=85.60 E-value=1.1 Score=40.84 Aligned_cols=58 Identities=22% Similarity=0.426 Sum_probs=43.9
Q ss_pred eeEEEEceeecCeeeEEcC--CcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchh
Q 042386 408 HVKLRIKSFRVPELFIELP--ETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKT 467 (699)
Q Consensus 408 ~VKl~IKSf~vPEL~IeiP--EtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kT 467 (699)
++..++.+ .||.|-++|| .++||..||++|.+-+-.-+ -+=|.-++.+||-..|....
T Consensus 2 ~l~IRFs~-sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~-s~~rLRlI~~Gr~L~d~t~l 61 (97)
T PF10302_consen 2 YLTIRFSD-SIPDLPLDIPSPNTTTVAWLKQLIRERLPPEP-SRRRLRLIYAGRLLNDHTDL 61 (97)
T ss_pred eEEEEECC-CCCCceeecCCCCcccHHHHHHHHHhhcCCCC-ccccEEeeecCcccCccchh
Confidence 34556666 8999999999 99999999999999882222 23477788899988865543
No 54
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=84.82 E-value=0.83 Score=53.70 Aligned_cols=50 Identities=18% Similarity=0.361 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhc
Q 042386 599 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHT 652 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~ 652 (699)
+.-+||.+|-..|+.+|++||.--|.+|.. .|.+|+-.++.|+|-|.++.
T Consensus 359 khg~wt~~ED~~L~~AV~~Yg~kdw~k~R~----~vPnRSdsQcR~RY~nvL~~ 408 (939)
T KOG0049|consen 359 KHGRWTDQEDVLLVCAVSRYGAKDWAKVRQ----AVPNRSDSQCRERYTNVLNR 408 (939)
T ss_pred cCCCCCCHHHHHHHHHHHHhCccchhhHHH----hcCCccHHHHHHHHHHHHHH
Confidence 456899999999999999999999999987 35889999999999887653
No 55
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=84.43 E-value=0.41 Score=46.74 Aligned_cols=29 Identities=45% Similarity=0.464 Sum_probs=26.0
Q ss_pred EEEEeecccccCcchhhhhhcccCCCCCC
Q 042386 452 VGVLLQGKKVKDDNKTLLQTGISHDNQKD 480 (699)
Q Consensus 452 VgvllqGKkV~dD~kTL~q~GIs~~~~ld 480 (699)
||...-|.|--||||||.|++|.+++.||
T Consensus 104 vG~t~~g~Kg~ddnktL~~~kf~iGD~lD 132 (151)
T KOG3391|consen 104 VGTTCLGRKGIDDNKTLQQTKFEIGDYLD 132 (151)
T ss_pred ecccccCcccCCccchhhhCCccccceEE
Confidence 56666799999999999999999998887
No 56
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=82.36 E-value=1.4 Score=47.02 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=46.8
Q ss_pred CCCCCHHHHHHHHHHHHH----hCCCc-----hHHHhhhccCCCCCCCchhhhhhhhhchhccccCcccc
Q 042386 600 RRPFSVAEVEALVQAVEK----LGTGR-----WRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARISPQQR 660 (699)
Q Consensus 600 rr~WT~eEveaLv~GVek----yG~Gk-----W~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a~i~pq~r 660 (699)
...|+.+|+.+|++...+ |..|+ |..|-......=-.||....|.||.||.|+-.-..+..
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~ 123 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAKK 123 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 789999999999998764 45577 99998733223357999999999999998765544433
No 57
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=81.06 E-value=2.7 Score=34.68 Aligned_cols=66 Identities=23% Similarity=0.352 Sum_probs=48.3
Q ss_pred eEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhc-CccEEEEEeecccccCcchhhhhhcccCCCCCC
Q 042386 409 VKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILG-GGLRVGVLLQGKKVKDDNKTLLQTGISHDNQKD 480 (699)
Q Consensus 409 VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailg-gglrVgvllqGKkV~dD~kTL~q~GIs~~~~ld 480 (699)
|+++-++.. ++.+.|..+.||+.|+....+... |-. . .+-+++.|+.+.++ .|+...||-.++-+|
T Consensus 3 i~v~~~~~~--~~~~~v~~~~~~~~l~~~~~~~~~-i~~~~--~~~l~fdG~~L~~~-~T~~~~~ied~d~Id 69 (72)
T PF11976_consen 3 IKVRSQDGK--EIKFKVKPTTTVSKLIEKYCEKKG-IPPEE--SIRLIFDGKRLDPN-DTPEDLGIEDGDTID 69 (72)
T ss_dssp EEEEETTSE--EEEEEEETTSCCHHHHHHHHHHHT-TTT-T--TEEEEETTEEE-TT-SCHHHHT-STTEEEE
T ss_pred EEEEeCCCC--EEEEEECCCCcHHHHHHHHHHhhC-CCccc--eEEEEECCEEcCCC-CCHHHCCCCCCCEEE
Confidence 455555555 888999999999999988877652 222 2 46789999999555 799999998887655
No 58
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=80.20 E-value=1.7 Score=49.60 Aligned_cols=64 Identities=20% Similarity=0.304 Sum_probs=50.3
Q ss_pred eeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCC
Q 042386 408 HVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHD 476 (699)
Q Consensus 408 ~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~ 476 (699)
-+|++||+-+= +.-|+|++|+||=.||..|.....+=- =++-++.-||+.+ |..||.|-||--+
T Consensus 15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~---dqlvLIfaGrILK-D~dTL~~~gI~Dg 78 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPP---DQLVLIYAGRILK-DDDTLKQYGIQDG 78 (493)
T ss_pred eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCCh---hHeeeeecCcccc-ChhhHHHcCCCCC
Confidence 49999999988 889999999999999998876652211 1334566787777 8899999999643
No 59
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=80.00 E-value=2.8 Score=36.38 Aligned_cols=67 Identities=30% Similarity=0.395 Sum_probs=47.8
Q ss_pred eEEEEceeecC--eeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEE--eeccc---ccCcchhhhhhcccCC
Q 042386 409 VKLRIKSFRVP--ELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVL--LQGKK---VKDDNKTLLQTGISHD 476 (699)
Q Consensus 409 VKl~IKSf~vP--EL~IeiPEtATVgSLKrtVmeavtailggglrVgvl--lqGKk---V~dD~kTL~q~GIs~~ 476 (699)
|++.|.|=... -.-+.+|.+.||+.||..+ |.++-|--.-.|+-+. -.|.. ..||.+||..-||..+
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl-~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg 75 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKL-EKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDG 75 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHH-HHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STT
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHH-HHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCC
Confidence 67777766654 4447799999999999876 5566777778888665 23433 4688999999998764
No 60
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=79.40 E-value=1.9 Score=53.21 Aligned_cols=55 Identities=27% Similarity=0.397 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchHHHhhhc-------cCC-CCCCCchhhhhhhhhchhcc
Q 042386 599 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLRA-------FDN-AKHRTYVDLKDKWKTLVHTA 653 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~-------~~~-f~~RT~VDLKDKWRNL~K~a 653 (699)
+.+.||.+|-..|+-.+.+||.|+|..|+..- |+. |..||..+|+.+-.+|++.-
T Consensus 925 ~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~~~ 987 (1033)
T PLN03142 925 KGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIRLI 987 (1033)
T ss_pred CCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999996432 333 38999999999999998753
No 61
>PTZ00044 ubiquitin; Provisional
Probab=79.33 E-value=2.9 Score=34.83 Aligned_cols=63 Identities=19% Similarity=0.232 Sum_probs=44.6
Q ss_pred EEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCC
Q 042386 411 LRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDN 477 (699)
Q Consensus 411 l~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~ 477 (699)
+.||.+.==.+-++|..+.||+.||..|-+.. .|--...| ++..|+-.. |+.||...||..+.
T Consensus 3 i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~-gi~~~~q~--L~~~g~~L~-d~~~l~~~~i~~~~ 65 (76)
T PTZ00044 3 ILIKTLTGKKQSFNFEPDNTVQQVKMALQEKE-GIDVKQIR--LIYSGKQMS-DDLKLSDYKVVPGS 65 (76)
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CCCHHHeE--EEECCEEcc-CCCcHHHcCCCCCC
Confidence 44455443346689999999999999998865 34333444 446788764 88999999987664
No 62
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=75.80 E-value=1.8 Score=43.58 Aligned_cols=63 Identities=24% Similarity=0.357 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchHHHhhhccC-----CC----CCCCchhhhhhh-----hhchhccccCccccCC
Q 042386 600 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFD-----NA----KHRTYVDLKDKW-----KTLVHTARISPQQRRG 662 (699)
Q Consensus 600 rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~-----~f----~~RT~VDLKDKW-----RNL~K~a~i~pq~rr~ 662 (699)
+.-|-..--=+|+.||-+||.|+|.+|.+++.. .| +.=+..|+|.|+ +-|...--|..|-||.
T Consensus 3 ~~iw~r~hdywll~gi~~hgy~rwqdi~nd~~f~IiNEPFk~e~~kgnfle~KNkFLaRRfKLLEQaLvIEEqLrRA 79 (173)
T PF08074_consen 3 YEIWHRRHDYWLLAGIVKHGYGRWQDIQNDPRFAIINEPFKTESQKGNFLEMKNKFLARRFKLLEQALVIEEQLRRA 79 (173)
T ss_pred hhhhhhhhhHHHHhHHhhccchhHHHHhcCCceeeecccccccccccchHHHHHHHHHHHHHHHHHHHhhhccccch
Confidence 446777777789999999999999999988732 23 112335888776 4555555566665554
No 63
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=67.84 E-value=6 Score=37.90 Aligned_cols=63 Identities=25% Similarity=0.354 Sum_probs=42.7
Q ss_pred eeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCC----CCCCCcccccc
Q 042386 421 LFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHD----NQKDVLGFSLE 487 (699)
Q Consensus 421 L~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~----~~ld~lgf~LE 487 (699)
.|++.=||.||=.|||++-.-+--=-+.- -|+++--|-||+|||.--|++.. .+-..||.+|-
T Consensus 14 iF~dakes~tVlelK~~iegI~k~pp~dQ----rL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 14 IFTDAKESTTVYELKRIVEGILKRPPEDQ----RLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred EEeecCCcccHHHHHHHHHHHhcCChhHh----eeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 58999999999999998754331111111 34466678999999999988532 24445666664
No 64
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=64.73 E-value=19 Score=30.88 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=31.5
Q ss_pred cCeeeEEcCCcchhhhHHHHHHHHH---HHHhcCccEEEEEeeccccc
Q 042386 418 VPELFIELPETATVGSLKRRVMEAV---NAILGGGLRVGVLLQGKKVK 462 (699)
Q Consensus 418 vPEL~IeiPEtATVgSLKrtVmeav---tailggglrVgvllqGKkV~ 462 (699)
.-|.-||+|+.+||+.|...+.+.- -.++. .|-|.++|+.|.
T Consensus 18 ~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~---~~~vavN~~~v~ 62 (82)
T PLN02799 18 VSDMTLELPAGSTTADCLAELVAKFPSLEEVRS---CCVLALNEEYTT 62 (82)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHChhHHHHhh---CcEEEECCEEcC
Confidence 5788999999999999999887643 22333 256888888874
No 65
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=63.59 E-value=4.6 Score=46.59 Aligned_cols=69 Identities=25% Similarity=0.402 Sum_probs=52.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhccccCccccCCCCCChHHHHHHH
Q 042386 599 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVL 674 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a~i~pq~rr~~~iP~ell~RV~ 674 (699)
.+..||.+|+..|..-|.++|. .|+.|.+. -+|-+-|.-|.||+.++.+ ..+--.+......++|+.|.
T Consensus 290 ~~~~wt~e~~~eL~~~~~~~~~-~w~~ig~~-----~~rmp~~crd~wr~~~~~g-~t~~~~~ws~eee~~l~~vv 358 (512)
T COG5147 290 QRGKWTKEEEQELAKLVVEHGG-SWTEIGKL-----LGRMPNDCRDRWRDYVKCG-DTLKRNRWSIEEEELLDKVV 358 (512)
T ss_pred hhccCccccccccccccccccc-hhhHhhhh-----hccCcHHHHHHHhhhcccc-CccCCCCCchhhhhhHHHHH
Confidence 5678999999999999999985 99999874 3588888999999999976 22222234455666666655
No 66
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=61.02 E-value=9.9 Score=43.93 Aligned_cols=46 Identities=22% Similarity=0.305 Sum_probs=36.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhc
Q 042386 599 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTL 649 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL 649 (699)
.+..||..|.-.|++||++||- .|.+|-.. ...||.=+-=.|+..|
T Consensus 252 ~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~h----Vg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEMYGD-DWNKVADH----VGTKSQEQCILKFLRL 297 (506)
T ss_pred CCCCccHHHHHHHHHHHHHhcc-cHHHHHhc----cCCCCHHHHHHHHHhc
Confidence 5679999999999999999998 99999763 2478876665555544
No 67
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=58.90 E-value=15 Score=31.32 Aligned_cols=47 Identities=30% Similarity=0.374 Sum_probs=35.2
Q ss_pred cCeeeEEcCCc-chhhhHHHHHHHHHHHHhcCccEEEEEeecccccCc
Q 042386 418 VPELFIELPET-ATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDD 464 (699)
Q Consensus 418 vPEL~IeiPEt-ATVgSLKrtVmeavtailggglrVgvllqGKkV~dD 464 (699)
..|..||+|+. +||..|...+.+.--.++...-.+-|+++|+-|++|
T Consensus 15 ~~~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~ 62 (80)
T TIGR01682 15 TDEETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDD 62 (80)
T ss_pred CCeEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCC
Confidence 45678999976 999999999977654444333356789999998853
No 68
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=57.35 E-value=8.4 Score=44.21 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=26.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchHHHhhh
Q 042386 599 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLR 629 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~GkW~~Il~~ 629 (699)
....||.+|.-.|.+||+.||. .|.+|-.+
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~H 307 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGD-DWDKVARH 307 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhh-hHHHHHHH
Confidence 3459999999999999999998 99999753
No 69
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=57.18 E-value=12 Score=32.33 Aligned_cols=52 Identities=23% Similarity=0.402 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHHh---C----CC-----chHHHhhhccCCC-CCCCchhhhhhhhhchhcc
Q 042386 602 PFSVAEVEALVQAVEKL---G----TG-----RWRDVKLRAFDNA-KHRTYVDLKDKWKTLVHTA 653 (699)
Q Consensus 602 ~WT~eEveaLv~GVeky---G----~G-----kW~~Il~~~~~~f-~~RT~VDLKDKWRNL~K~a 653 (699)
.||+++.+.|++.+-.. | .| .|..|.......+ ..-|.-.||.||+.|.+.-
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y 65 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDY 65 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHH
Confidence 59999999999988554 2 22 2778877544434 4567788999999888744
No 70
>PF06487 SAP18: Sin3 associated polypeptide p18 (SAP18); InterPro: IPR010516 This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences. SAP18 is known to be a component of the Sin3-containing complex, which is responsible for the repression of transcription via the modification of histone polypeptides []. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death [].; PDB: 2HDE_A 4A90_A 4A6Q_A 4A8X_C.
Probab=56.27 E-value=21 Score=34.14 Aligned_cols=62 Identities=26% Similarity=0.234 Sum_probs=41.3
Q ss_pred cCeeeEEcCCcchhhhHHHHHHHHHHHHhcCcc------------------E-EEEEeecccccCcchhhhhhcccCCCC
Q 042386 418 VPELFIELPETATVGSLKRRVMEAVNAILGGGL------------------R-VGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 418 vPEL~IeiPEtATVgSLKrtVmeavtailgggl------------------r-VgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
-+||-|=.-.+||.--|=-.|.|+.-..---|- | ||....|++-.||+|||.+++..-++-
T Consensus 36 ~~elqIYtW~d~TLrEL~~Lik~~~~~~r~~~tr~~F~~VypD~~~~r~~~kdlGsv~~g~~~~d~~kTL~~~~F~iGDy 115 (120)
T PF06487_consen 36 RNELQIYTWMDATLRELADLIKDVNPPARRRGTRLSFRLVYPDTRSGRYVSKDLGSVVSGRKGPDDNKTLADLRFVIGDY 115 (120)
T ss_dssp TTEEEEEE-TT-BHHHHHHHHHHH-HHHHSTT-EEEEEEEEECTTTTCEEEEEEEEEETTB--TTTTSBCGGGT--TT-E
T ss_pred cCeeEEEEcccCCHHHHHHHHHHhCcccCCCCCEEEEEEEeecCCCCceeeecCCeEECCCCCCCcccCHhhCCcccCCE
Confidence 349999999999998888888886554432222 2 899999999999999999997765554
Q ss_pred C
Q 042386 479 K 479 (699)
Q Consensus 479 l 479 (699)
|
T Consensus 116 i 116 (120)
T PF06487_consen 116 I 116 (120)
T ss_dssp E
T ss_pred E
Confidence 3
No 71
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=55.64 E-value=22 Score=25.35 Aligned_cols=55 Identities=22% Similarity=0.316 Sum_probs=36.3
Q ss_pred ecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccC
Q 042386 417 RVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISH 475 (699)
Q Consensus 417 ~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~ 475 (699)
...+.-+.++.++||+.||..+.+... + .-=++-+++.|..+.++. ++...++..
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~-~--~~~~~~l~~~~~~~~~~~-~~~~~~~~~ 60 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLG-L--PPEQQRLLVNGKILPDSL-TLEDYGLQD 60 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHC-c--ChHHeEEEECCeECCCCC-cHHHcCCCC
Confidence 566777889999999999999998763 1 122345566676665554 443444433
No 72
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=54.35 E-value=7.3 Score=49.01 Aligned_cols=39 Identities=15% Similarity=0.269 Sum_probs=32.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCC
Q 042386 599 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHR 637 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~R 637 (699)
.-.-|..+|-..|+-||-+||.|+|-.|+.++.-.|.+.
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~l~dK 1170 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLGLTDK 1170 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccCccccchhh
Confidence 345799999999999999999999999999886544433
No 73
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=54.08 E-value=19 Score=29.99 Aligned_cols=46 Identities=33% Similarity=0.321 Sum_probs=32.8
Q ss_pred cCeeeEEcCCcchhhhHHHHHHHHHHHHh-cCccEEEEEeecccccC
Q 042386 418 VPELFIELPETATVGSLKRRVMEAVNAIL-GGGLRVGVLLQGKKVKD 463 (699)
Q Consensus 418 vPEL~IeiPEtATVgSLKrtVmeavtail-ggglrVgvllqGKkV~d 463 (699)
.+|.-||+|+.+||+.|.+.+-+.--... .-.-.+.|+++|+.|..
T Consensus 15 ~~~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~ 61 (80)
T cd00754 15 KDEEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRL 61 (80)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCC
Confidence 56788999999999999888766532110 01235778999999983
No 74
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=49.13 E-value=24 Score=30.34 Aligned_cols=46 Identities=24% Similarity=0.606 Sum_probs=29.3
Q ss_pred CCCCCHHHHHHHHHHHHHh---C---CCc--hHHHhhhccCCCCCCCchhhhhhhhh
Q 042386 600 RRPFSVAEVEALVQAVEKL---G---TGR--WRDVKLRAFDNAKHRTYVDLKDKWKT 648 (699)
Q Consensus 600 rr~WT~eEveaLv~GVeky---G---~Gk--W~~Il~~~~~~f~~RT~VDLKDKWRN 648 (699)
|.+||.+|-.+|++=|.++ | .|+ |+.+-... ...+|---++|+|+-
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~---~t~HtwQSwR~Ry~K 55 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKH---PTRHTWQSWRDRYLK 55 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS----SSS--SHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc---CCCCCHHHHHHHHHH
Confidence 6799999999999999655 3 354 87776543 258899999999953
No 75
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=48.96 E-value=20 Score=30.94 Aligned_cols=47 Identities=28% Similarity=0.306 Sum_probs=34.9
Q ss_pred cCeeeEEcCCcchhhhHHHHHHHHHHH----Hhc--Ccc--EEEEEeecccccCcc
Q 042386 418 VPELFIELPETATVGSLKRRVMEAVNA----ILG--GGL--RVGVLLQGKKVKDDN 465 (699)
Q Consensus 418 vPEL~IeiPEtATVgSLKrtVmeavta----ilg--ggl--rVgvllqGKkV~dD~ 465 (699)
.+|+-||+| .+||+-|...+.+-.-. +|. |.+ .|-|+++|..|.+|.
T Consensus 15 ~~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~ 69 (88)
T TIGR01687 15 KKSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGL 69 (88)
T ss_pred CceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccC
Confidence 467889998 89999999999877543 332 233 378899999998663
No 76
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=48.19 E-value=19 Score=34.33 Aligned_cols=51 Identities=25% Similarity=0.272 Sum_probs=33.2
Q ss_pred cCCcchhhhHHHHHHHHHHHHhcCcc----EEEEEeecccccCcchhhhhhcccCC
Q 042386 425 LPETATVGSLKRRVMEAVNAILGGGL----RVGVLLQGKKVKDDNKTLLQTGISHD 476 (699)
Q Consensus 425 iPEtATVgSLKrtVmeavtailgggl----rVgvllqGKkV~dD~kTL~q~GIs~~ 476 (699)
++.++||+.||..|.+.--.=-+|+- .+-++..|| |=.|++||...+..-+
T Consensus 22 ~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGK-iLeD~~TL~d~~~p~g 76 (113)
T cd01814 22 YPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGK-ILENSKTVGECRSPVG 76 (113)
T ss_pred cChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCe-ecCCCCcHHHhCCccc
Confidence 46899999999999855411001221 344666777 5567799999975443
No 77
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=45.01 E-value=30 Score=31.60 Aligned_cols=55 Identities=16% Similarity=0.097 Sum_probs=37.4
Q ss_pred CCCCCCHHHHHHHHHHHHHh----CCCchHH---HhhhccCCC-CCCCchhhhhhhhhchhcc
Q 042386 599 IRRPFSVAEVEALVQAVEKL----GTGRWRD---VKLRAFDNA-KHRTYVDLKDKWKTLVHTA 653 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVeky----G~GkW~~---Il~~~~~~f-~~RT~VDLKDKWRNL~K~a 653 (699)
-.|.||++++-.|++|+-.| |.....+ ....-...+ .+=|.-+|.||-|.|.+.-
T Consensus 3 ~qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky 65 (98)
T PF04504_consen 3 FQRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKY 65 (98)
T ss_pred CcCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Confidence 45689999999999999887 7654443 332211122 2236789999999998753
No 78
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=43.61 E-value=12 Score=42.25 Aligned_cols=51 Identities=24% Similarity=0.363 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchHHHhhhccC-CC-CCCCchhhhhhh----hhchhc
Q 042386 601 RPFSVAEVEALVQAVEKLGTGRWRDVKLRAFD-NA-KHRTYVDLKDKW----KTLVHT 652 (699)
Q Consensus 601 r~WT~eEveaLv~GVekyG~GkW~~Il~~~~~-~f-~~RT~VDLKDKW----RNL~K~ 652 (699)
.-||-+|++.|-+-.++|-. +|--|-..|.. .| .+||-=||||+| |+|.+.
T Consensus 131 n~WskeETD~LF~lck~fDL-Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kA 187 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDL-RFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKA 187 (445)
T ss_pred ccccHHHHHHHHHHHHhcCe-eEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHc
Confidence 47999999999999999988 99999877532 35 569999999999 455553
No 79
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=40.68 E-value=35 Score=38.69 Aligned_cols=57 Identities=18% Similarity=0.175 Sum_probs=47.7
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhcc
Q 042386 592 SEIVQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTA 653 (699)
Q Consensus 592 ~e~~~RR~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a 653 (699)
+..|+++..-+||.+|.+.+-.++..+|+ .+..|-.. |..|..-++|-||.+=.|..
T Consensus 357 ~t~g~~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~l----fP~R~RkqIKaKfi~Eek~n 413 (507)
T COG5118 357 STFGKKKGALRWSKKEIEKFYKALSIWGT-DFSLISSL----FPNRERKQIKAKFIKEEKVN 413 (507)
T ss_pred ccccCCCCCCcccHHHHHHHHHHHHHhcc-hHHHHHHh----cCchhHHHHHHHHHHHhhhC
Confidence 45688889999999999999999999999 78888764 57788888888887766544
No 80
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=36.15 E-value=53 Score=39.06 Aligned_cols=74 Identities=24% Similarity=0.352 Sum_probs=51.8
Q ss_pred CCCCCCCCHHHHHHHHHHHH-------Hh-------C-----------CCchHHHhhhccCCCCCCCchhhhhhhhhchh
Q 042386 597 RRIRRPFSVAEVEALVQAVE-------KL-------G-----------TGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVH 651 (699)
Q Consensus 597 RR~rr~WT~eEveaLv~GVe-------ky-------G-----------~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K 651 (699)
.+.+..||.||.+.|++.|+ .| | .=+|..|-. ....|+.+.-.-||-.|+.
T Consensus 433 ~~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse----~~~TR~~~qCr~Kw~kl~~ 508 (607)
T KOG0051|consen 433 KRNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSE----MLGTRSRIQCRYKWYKLTT 508 (607)
T ss_pred ccccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhH----hhcCCCcchHHHHHHHHHh
Confidence 36888999999999999997 33 1 127999876 4578999999999999988
Q ss_pred ccccCccccCCCCCChHHHHHHH
Q 042386 652 TARISPQQRRGEPVPQELLDRVL 674 (699)
Q Consensus 652 ~a~i~pq~rr~~~iP~ell~RV~ 674 (699)
...+.-.+---.----.|++|+.
T Consensus 509 ~~s~n~~~~~~~~~~v~l~ErL~ 531 (607)
T KOG0051|consen 509 SPSFNKRQESKGSDMVWLLERLS 531 (607)
T ss_pred hHHhhcccccccchhHHHHHHHH
Confidence 66654222111111234677765
No 81
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=35.46 E-value=33 Score=28.32 Aligned_cols=43 Identities=35% Similarity=0.353 Sum_probs=34.0
Q ss_pred eeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccC
Q 042386 420 ELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKD 463 (699)
Q Consensus 420 EL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~d 463 (699)
|..+++|+.+||+.|.+.+.+.--.+. ---++.|+++|+-|++
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~-~~~~~~v~vN~~~v~~ 55 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELA-LRDRVAVAVNGEIVPD 55 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGH-TTTTEEEEETTEEEGG
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccc-cCccEEEEECCEEcCC
Confidence 788999999999999988876653332 1246889999999998
No 82
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=34.07 E-value=27 Score=40.82 Aligned_cols=43 Identities=26% Similarity=0.426 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhh
Q 042386 601 RPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWK 647 (699)
Q Consensus 601 r~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWR 647 (699)
.-|+..|.+-|..||.+||...|+.|-..+ +.-|.-.-|-+|-
T Consensus 8 gvwrntEdeilkaav~kyg~nqws~i~sll----~~kt~rqC~~rw~ 50 (617)
T KOG0050|consen 8 GVWRNTEDEVLKAAVMKYGKNQWSRIASLL----NRKTARQCKARWE 50 (617)
T ss_pred ceecccHHHHHHHHHHHcchHHHHHHHHHH----hhcchhHHHHHHH
Confidence 369999999999999999999999998753 5567777777775
No 83
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.79 E-value=37 Score=38.72 Aligned_cols=49 Identities=31% Similarity=0.386 Sum_probs=41.0
Q ss_pred ceeecCeeeEEcCCcchhhhHHHHHH-----HHHHHHhcCccEEEEEeecccccCcchh
Q 042386 414 KSFRVPELFIELPETATVGSLKRRVM-----EAVNAILGGGLRVGVLLQGKKVKDDNKT 467 (699)
Q Consensus 414 KSf~vPEL~IeiPEtATVgSLKrtVm-----eavtailggglrVgvllqGKkV~dD~kT 467 (699)
|--++=+|++| |++++++-|...+. ||+.-|..|| |-|+++||+|.|.-
T Consensus 386 k~a~~~~l~~~-~~~s~~~l~~ka~~~~s~~~a~r~i~qG~----vslnh~~v~~es~~ 439 (467)
T KOG2623|consen 386 KDATFIDLKDE-PGVSILDLLRKASRFPSGKEARRMIQQGG----VSLNHEKVRDESVS 439 (467)
T ss_pred hcCCceecccC-CCCcHHHHHHHhhcCCCcHHHHHHHHccc----eeecCccccCchhh
Confidence 33456678888 99999999988764 9999999999 99999999996543
No 84
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=32.38 E-value=49 Score=28.97 Aligned_cols=53 Identities=11% Similarity=0.179 Sum_probs=35.6
Q ss_pred EEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccC
Q 042386 423 IELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISH 475 (699)
Q Consensus 423 IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~ 475 (699)
-..+.|.||+.|..-|....-.--++-..+-.-.-.|.+.|+++||..+|+..
T Consensus 19 ~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~ 71 (79)
T cd01770 19 QKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLN 71 (79)
T ss_pred EEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcC
Confidence 45788999998888777544211112233322346788999999999999763
No 85
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=31.72 E-value=21 Score=30.68 Aligned_cols=60 Identities=18% Similarity=0.235 Sum_probs=36.9
Q ss_pred eeeEEcCCcchhhhHHHHHHHHHHHHhcCcc-EEEEEee--cccccCcchhhhhhcccCCCCC
Q 042386 420 ELFIELPETATVGSLKRRVMEAVNAILGGGL-RVGVLLQ--GKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 420 EL~IeiPEtATVgSLKrtVmeavtailgggl-rVgvllq--GKkV~dD~kTL~q~GIs~~~~l 479 (699)
..-++||...||+.|-..+.+++..--.+.- +-+.-|. |-.+=+++.||.+.||-.++-|
T Consensus 14 ~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L 76 (79)
T PF08817_consen 14 QVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVL 76 (79)
T ss_dssp EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EE
T ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEE
Confidence 4668999999999999999988762111111 1123333 3336799999999999887643
No 86
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=24.79 E-value=1.2e+02 Score=25.69 Aligned_cols=52 Identities=13% Similarity=0.123 Sum_probs=31.5
Q ss_pred eeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccC--cchhhhhhccc
Q 042386 421 LFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKD--DNKTLLQTGIS 474 (699)
Q Consensus 421 L~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~d--D~kTL~q~GIs 474 (699)
+-...+-++||+.|..-|...... ....++---.-.|.+.| +++||..+||.
T Consensus 15 ~~~~F~~~~tl~~l~~fv~~~~~~--~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~ 68 (77)
T cd01767 15 LEQRFNSTHKLSDVRDFVESNGPP--AEPFTLMTSFPRRVLTDLDYELTLQEAGLV 68 (77)
T ss_pred EEEEeCCCCCHHHHHHHHHHcCCC--CCCEEEEeCCCCccCCCCCccCcHHHcCCc
Confidence 445678899998776665433211 22233222223366666 89999999987
No 87
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=22.91 E-value=1.3e+02 Score=25.54 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=36.9
Q ss_pred eeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcc-hhhhhhcccCCC
Q 042386 420 ELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDN-KTLLQTGISHDN 477 (699)
Q Consensus 420 EL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~-kTL~q~GIs~~~ 477 (699)
-|--..+-|+||+.|..-|............++---.--+.+.++. +||..+|+..+.
T Consensus 18 ~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~ 76 (82)
T PF00789_consen 18 RLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSA 76 (82)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCE
T ss_pred EEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCe
Confidence 3778889999999998777655533322213321112235666666 899999887654
No 88
>PHA02357 hypothetical protein
Probab=22.83 E-value=79 Score=28.61 Aligned_cols=29 Identities=31% Similarity=0.590 Sum_probs=24.3
Q ss_pred eEEcCCcchhhhHHHHHHHHHHHHhcCcc
Q 042386 422 FIELPETATVGSLKRRVMEAVNAILGGGL 450 (699)
Q Consensus 422 ~IeiPEtATVgSLKrtVmeavtailgggl 450 (699)
|+=|--.+-|.|.|..++||||--+||||
T Consensus 25 yvyvnkDtivds~k~k~~eait~sv~~~l 53 (81)
T PHA02357 25 YVYVNKDTIVDSAKEKATEAITESVGGGL 53 (81)
T ss_pred EEEEechHHHHHHHHHHHHHHHHhhcccC
Confidence 44455667899999999999999999995
No 89
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=22.41 E-value=1e+02 Score=35.00 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=32.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhh
Q 042386 599 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLK 643 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLK 643 (699)
.---||++|-.++-+|++.||. .+-.|+.. ....|+-.-|-
T Consensus 276 ~l~~wsEeEcr~FEegl~~yGK-DF~lIr~n---kvrtRsvgElV 316 (445)
T KOG4329|consen 276 DLSGWSEEECRNFEEGLELYGK-DFHLIRAN---KVRTRSVGELV 316 (445)
T ss_pred ccccCCHHHHHHHHHHHHHhcc-cHHHHHhc---ccccchHHHHH
Confidence 4568999999999999999999 88888863 34566655543
No 90
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=21.61 E-value=1.6e+02 Score=29.93 Aligned_cols=32 Identities=41% Similarity=0.611 Sum_probs=27.0
Q ss_pred EEEceeec----CeeeEEcCCcchhhhHHHHHHHHH
Q 042386 411 LRIKSFRV----PELFIELPETATVGSLKRRVMEAV 442 (699)
Q Consensus 411 l~IKSf~v----PEL~IeiPEtATVgSLKrtVmeav 442 (699)
+-|+||.= |-|-+.+|.++||..|+..+.+-.
T Consensus 3 Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~ 38 (162)
T PF13019_consen 3 VLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERL 38 (162)
T ss_pred EEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhc
Confidence 45677766 899999999999999999888765
No 91
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=20.87 E-value=2e+02 Score=27.43 Aligned_cols=49 Identities=33% Similarity=0.451 Sum_probs=34.1
Q ss_pred eeeEEcCCcchhhhHHHHHHHHHHHHhcCc---cEEEEEeecccccCcchhhhhhcc
Q 042386 420 ELFIELPETATVGSLKRRVMEAVNAILGGG---LRVGVLLQGKKVKDDNKTLLQTGI 473 (699)
Q Consensus 420 EL~IeiPEtATVgSLKrtVmeavtailggg---lrVgvllqGKkV~dD~kTL~q~GI 473 (699)
-.||.--||.||=-||+++- +|+.-- -|. +++.--.+-||.|||-..|.
T Consensus 13 tif~da~es~tV~elK~~l~----gi~~~Pvn~qrL-~kmd~eqlL~D~ktL~d~gf 64 (110)
T KOG4495|consen 13 TIFTDAKESSTVFELKRKLE----GILKRPVNEQRL-YKMDTEQLLDDGKTLGDCGF 64 (110)
T ss_pred eEEeecCccccHHHHHHHHH----HHHhCCCcchhe-eecCHHHHhhccchhhhccc
Confidence 36888899999999999753 334333 122 34455577899999998843
No 92
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=20.29 E-value=1.5e+02 Score=25.54 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=24.0
Q ss_pred CeeeEEcCCcchhhhHHHHHHHHH----HHHhcCccEEEEEeeccc
Q 042386 419 PELFIELPETATVGSLKRRVMEAV----NAILGGGLRVGVLLQGKK 460 (699)
Q Consensus 419 PEL~IeiPEtATVgSLKrtVmeav----tailggglrVgvllqGKk 460 (699)
.|+-|+ ++.+||+.|+..+.+.- -.+..|.++|.| +|.-
T Consensus 17 ~~~~v~-~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aV--N~~~ 59 (81)
T PRK11130 17 DALELA-ADFPTVEALRQHLAQKGDRWALALEDGKLLAAV--NQTL 59 (81)
T ss_pred ceEEec-CCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEE--CCEE
Confidence 444444 45689999999997754 123456666444 5533
Done!