Query 042386
Match_columns 699
No_of_seqs 152 out of 343
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 09:35:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2roh_A RTBP1, telomere binding 100.0 9.4E-32 3.2E-36 246.6 7.6 116 571-687 3-118 (122)
2 2aje_A Telomere repeat-binding 100.0 1.4E-31 4.8E-36 239.9 8.5 100 592-691 5-104 (105)
3 2juh_A Telomere binding protei 99.9 1.3E-28 4.6E-33 225.5 8.5 108 584-691 1-108 (121)
4 2ckx_A NGTRF1, telomere bindin 99.9 2.7E-27 9.3E-32 204.1 7.2 83 601-683 1-83 (83)
5 1x58_A Hypothetical protein 49 99.7 1.6E-17 5.4E-22 137.2 5.6 56 597-654 5-60 (62)
6 3sjm_A Telomeric repeat-bindin 99.4 4.3E-13 1.5E-17 110.2 5.5 54 598-653 9-62 (64)
7 1w0t_A Telomeric repeat bindin 99.2 1.9E-11 6.5E-16 95.9 5.5 52 599-652 1-52 (53)
8 1ity_A TRF1; helix-turn-helix, 99.2 2.9E-11 9.8E-16 99.5 5.9 58 595-654 5-62 (69)
9 1guu_A C-MYB, MYB proto-oncoge 98.7 2E-08 6.7E-13 78.1 5.2 48 600-651 3-50 (52)
10 2d9a_A B-MYB, MYB-related prot 98.6 4.1E-08 1.4E-12 78.5 5.1 50 598-651 6-55 (60)
11 1gvd_A MYB proto-oncogene prot 98.5 7.3E-08 2.5E-12 75.0 5.4 48 600-651 3-50 (52)
12 1x41_A Transcriptional adaptor 98.4 1.7E-07 5.9E-12 75.3 4.2 50 599-652 7-56 (60)
13 2dim_A Cell division cycle 5-l 98.4 2.9E-07 9.9E-12 75.7 5.2 51 597-651 6-56 (70)
14 2elk_A SPCC24B10.08C protein; 98.3 3.1E-07 1.1E-11 73.6 4.0 47 600-650 9-56 (58)
15 2yus_A SWI/SNF-related matrix- 98.2 7.7E-07 2.6E-11 76.0 4.8 51 595-650 13-63 (79)
16 2cu7_A KIAA1915 protein; nucle 98.2 9.5E-07 3.3E-11 73.3 3.8 49 599-652 8-56 (72)
17 1gv2_A C-MYB, MYB proto-oncoge 98.1 5.6E-06 1.9E-10 72.2 7.8 75 600-683 4-81 (105)
18 3osg_A MYB21; transcription-DN 98.1 2.5E-06 8.4E-11 77.3 5.2 55 599-658 61-115 (126)
19 2yum_A ZZZ3 protein, zinc fing 98.1 1.8E-06 6.2E-11 71.7 4.0 49 599-651 7-60 (75)
20 2llk_A Cyclin-D-binding MYB-li 98.1 2E-06 6.9E-11 72.8 3.9 49 599-653 22-70 (73)
21 1h8a_C AMV V-MYB, MYB transfor 98.0 8E-06 2.7E-10 73.8 6.9 77 599-684 26-105 (128)
22 1gv2_A C-MYB, MYB proto-oncoge 98.0 6.3E-06 2.2E-10 71.8 5.2 49 599-652 55-103 (105)
23 3osg_A MYB21; transcription-DN 98.0 1.6E-05 5.3E-10 72.0 7.7 50 597-651 8-57 (126)
24 2k9n_A MYB24; R2R3 domain, DNA 97.9 1.7E-05 5.9E-10 69.8 7.6 75 601-684 2-79 (107)
25 2din_A Cell division cycle 5-l 97.9 7.2E-06 2.5E-10 66.7 4.4 47 599-651 8-54 (66)
26 3zqc_A MYB3; transcription-DNA 97.9 1.9E-05 6.3E-10 71.9 6.8 50 599-653 53-102 (131)
27 2k9n_A MYB24; R2R3 domain, DNA 97.9 7.6E-06 2.6E-10 72.1 3.8 49 599-652 52-100 (107)
28 1h8a_C AMV V-MYB, MYB transfor 97.9 1.3E-05 4.3E-10 72.5 5.2 49 599-652 78-126 (128)
29 3zqc_A MYB3; transcription-DNA 97.9 2.3E-05 7.8E-10 71.3 6.9 74 600-682 2-78 (131)
30 1h89_C C-MYB, MYB proto-oncoge 97.8 4.4E-05 1.5E-09 71.1 7.7 77 599-684 57-136 (159)
31 2cqr_A RSGI RUH-043, DNAJ homo 97.8 1.7E-05 5.8E-10 67.1 4.2 52 597-652 15-69 (73)
32 1v2y_A 3300001G02RIK protein; 97.7 6.4E-05 2.2E-09 67.2 6.6 78 408-488 7-96 (105)
33 2ltp_A Nuclear receptor corepr 96.8 8.5E-06 2.9E-10 70.5 0.0 52 599-655 15-66 (89)
34 1h89_C C-MYB, MYB proto-oncoge 97.6 6.1E-05 2.1E-09 70.2 5.2 49 599-652 109-157 (159)
35 2cjj_A Radialis; plant develop 97.2 0.00023 7.8E-09 62.8 4.1 49 600-652 8-59 (93)
36 2eqr_A N-COR1, N-COR, nuclear 97.0 0.00077 2.6E-08 54.5 5.2 53 595-652 7-59 (61)
37 2kk8_A Uncharacterized protein 97.0 0.0011 3.8E-08 55.9 6.2 70 406-478 8-77 (84)
38 1wia_A Hypothetical ubiquitin- 97.0 0.00038 1.3E-08 59.1 3.2 66 407-478 6-71 (95)
39 3hm5_A DNA methyltransferase 1 97.0 0.00071 2.4E-08 60.0 4.8 50 601-651 31-81 (93)
40 2dzi_A Ubiquitin-like protein 96.9 0.0013 4.4E-08 53.3 5.9 69 407-479 6-74 (81)
41 1wx7_A Ubiquilin 3; ubiquitin- 96.8 0.0019 6.4E-08 56.2 6.5 70 405-479 14-83 (106)
42 3a9j_A Ubiquitin; protein comp 96.8 0.0018 6.3E-08 51.3 5.4 65 410-478 2-66 (76)
43 2kan_A Uncharacterized protein 96.7 0.002 6.8E-08 55.4 5.5 70 404-477 11-80 (94)
44 3mtn_B UBA80, ubcep1, ubiquiti 96.7 0.0016 5.4E-08 53.0 4.6 69 407-479 2-70 (85)
45 1wx8_A Riken cDNA 4931431F19; 96.7 0.0014 4.9E-08 55.5 4.5 68 407-479 16-83 (96)
46 1ndd_A NEDD8, protein (ubiquit 96.7 0.0025 8.4E-08 50.6 5.5 65 410-478 2-66 (76)
47 1ign_A Protein (RAP1); RAP1,ye 96.7 0.0012 4E-08 67.2 4.4 51 599-653 7-62 (246)
48 1j8c_A Ubiquitin-like protein 96.6 0.0041 1.4E-07 56.4 7.4 69 405-478 29-97 (125)
49 2cqq_A RSGI RUH-037, DNAJ homo 96.6 0.0021 7.1E-08 54.2 5.0 51 600-655 8-61 (72)
50 3dbh_I NEDD8; cell cycle, acti 96.6 0.0022 7.5E-08 52.8 5.1 70 405-478 9-78 (88)
51 1uel_A HHR23B, UV excision rep 96.6 0.0027 9.2E-08 54.2 5.7 67 410-479 2-70 (95)
52 2bwf_A Ubiquitin-like protein 96.6 0.0027 9.3E-08 50.8 5.4 66 409-479 5-70 (77)
53 1v86_A DNA segment, CHR 7, way 96.5 0.0017 5.9E-08 55.8 4.1 76 399-480 8-83 (95)
54 3n3k_B Ubiquitin; hydrolase, p 96.5 0.0027 9.4E-08 51.7 4.9 68 408-479 3-70 (85)
55 2hj8_A Interferon-induced 17 k 96.3 0.0036 1.2E-07 52.6 4.7 68 407-478 3-70 (88)
56 2wyq_A HHR23A, UV excision rep 96.3 0.0035 1.2E-07 51.3 4.6 68 408-478 5-74 (85)
57 1v5o_A 1700011N24RIK protein; 96.3 0.0055 1.9E-07 53.1 5.8 68 409-479 8-79 (102)
58 1wxv_A BAG-family molecular ch 96.3 0.0046 1.6E-07 52.1 5.2 68 408-479 7-79 (92)
59 1wh3_A 59 kDa 2'-5'-oligoadeny 96.3 0.0045 1.6E-07 51.0 5.0 68 407-478 6-73 (87)
60 2klc_A Ubiquilin-1; ubiquitin- 96.2 0.0057 1.9E-07 53.1 5.7 69 405-478 22-90 (101)
61 4hcn_B Polyubiquitin, ubiquiti 96.2 0.0033 1.1E-07 53.9 4.1 70 405-478 19-88 (98)
62 3phx_B Ubiquitin-like protein 96.2 0.0045 1.5E-07 50.3 4.7 68 407-478 3-70 (79)
63 3v6c_B Ubiquitin; structural g 96.1 0.0066 2.3E-07 51.0 5.3 68 407-478 16-83 (91)
64 2uyz_B Small ubiquitin-related 96.1 0.0053 1.8E-07 49.9 4.6 68 408-479 3-70 (79)
65 1yqb_A Ubiquilin 3; structural 96.1 0.008 2.7E-07 52.2 5.9 70 404-478 18-87 (100)
66 4b4c_A Chromodomain-helicase-D 96.1 0.0043 1.5E-07 59.7 4.6 39 600-638 134-172 (211)
67 3k9o_B Ubiquitin, UBB+1; E2-25 96.1 0.0069 2.4E-07 50.9 5.2 67 409-479 2-68 (96)
68 2l7r_A Ubiquitin-like protein 96.0 0.0072 2.5E-07 51.6 5.2 66 407-478 18-83 (93)
69 1yx5_B Ubiquitin; proteasome, 96.0 0.007 2.4E-07 51.6 4.9 66 410-479 2-67 (98)
70 2ojr_A Ubiquitin; lanthide-bin 95.9 0.0086 2.9E-07 52.6 5.4 69 407-479 34-102 (111)
71 3vdz_A Ubiquitin-40S ribosomal 95.9 0.01 3.6E-07 52.3 5.9 68 408-479 35-102 (111)
72 1x1m_A Ubiquitin-like protein 95.9 0.009 3.1E-07 52.3 5.4 67 407-478 11-93 (107)
73 1wy8_A NP95-like ring finger p 95.8 0.011 3.9E-07 48.9 5.4 68 407-478 6-75 (89)
74 1wgd_A Homocysteine-responsive 95.8 0.014 4.6E-07 49.4 5.9 64 408-476 7-77 (93)
75 2dzj_A Synaptic glycoprotein S 95.8 0.0054 1.8E-07 52.5 3.3 67 408-477 10-81 (88)
76 4dwf_A HLA-B-associated transc 95.8 0.017 6E-07 48.0 6.3 65 407-476 4-68 (90)
77 1ttn_A DC-UBP, dendritic cell- 95.8 0.0067 2.3E-07 52.9 3.9 69 407-479 22-90 (106)
78 2faz_A Ubiquitin-like containi 95.6 0.014 4.7E-07 47.2 5.1 65 409-477 3-69 (78)
79 1sif_A Ubiquitin; hydrophobic 95.6 0.011 3.8E-07 49.7 4.7 66 409-478 10-75 (88)
80 4fbj_B NEDD8; effector-HOST ta 95.6 0.011 3.9E-07 49.6 4.5 64 410-477 2-65 (88)
81 2kdb_A Homocysteine-responsive 95.5 0.0082 2.8E-07 52.7 3.5 67 407-476 22-93 (99)
82 2ebi_A DNA binding protein GT- 95.5 0.0037 1.3E-07 53.0 1.2 56 598-654 2-67 (86)
83 2iw5_B Protein corest, REST co 95.4 0.011 3.9E-07 59.7 4.5 55 595-654 128-182 (235)
84 2yqk_A Arginine-glutamic acid 95.4 0.026 9E-07 46.0 5.8 52 597-652 6-57 (63)
85 4a20_A Ubiquitin-like protein 95.3 0.0092 3.2E-07 52.4 3.1 67 407-476 18-87 (98)
86 1we7_A SF3A1 protein; structur 95.2 0.02 7E-07 50.5 5.1 66 408-477 25-100 (115)
87 3b08_A Polyubiquitin-C, ubiqui 95.2 0.023 7.7E-07 50.7 5.4 66 410-479 2-67 (152)
88 2crg_A Metastasis associated p 95.2 0.038 1.3E-06 46.0 6.2 56 597-656 5-60 (70)
89 1wgx_A KIAA1903 protein; MYB D 95.2 0.019 6.5E-07 48.9 4.5 52 601-656 9-63 (73)
90 4iej_A DNA methyltransferase 1 95.1 0.021 7.1E-07 50.8 4.9 49 602-651 32-81 (93)
91 1wyw_B Ubiquitin-like protein 95.1 0.026 8.8E-07 48.5 5.2 71 406-480 19-89 (97)
92 3m62_B UV excision repair prot 95.0 0.0095 3.2E-07 52.1 2.4 66 409-478 2-67 (106)
93 2xb0_X Chromo domain-containin 95.0 0.015 5.3E-07 59.7 4.2 32 601-632 169-200 (270)
94 3u30_A Ubiquitin, linear DI-ub 95.0 0.025 8.7E-07 52.6 5.2 69 407-479 19-87 (172)
95 3b1l_X E3 ubiquitin-protein li 93.9 0.0046 1.6E-07 49.6 0.0 65 411-479 3-67 (76)
96 4eew_A Large proline-rich prot 94.9 0.046 1.6E-06 45.3 6.1 64 406-473 15-78 (88)
97 2kdi_A Ubiquitin, vacuolar pro 94.7 0.035 1.2E-06 49.3 5.1 67 409-479 10-76 (114)
98 1v5t_A 8430435I17RIK protein; 94.6 0.016 5.4E-07 49.2 2.7 67 408-479 7-77 (90)
99 2lxa_A Ubiquitin-like protein 94.5 0.012 4.2E-07 50.5 1.7 64 409-475 2-67 (87)
100 4dbg_A Ranbp-type and C3HC4-ty 94.3 0.054 1.8E-06 48.7 5.5 63 408-477 24-91 (105)
101 3m63_B Ubiquitin domain-contai 94.2 0.017 5.9E-07 50.3 2.0 65 408-477 28-92 (101)
102 1wf9_A NPL4 family protein; be 94.2 0.021 7.2E-07 50.1 2.5 67 409-479 8-89 (107)
103 2kd0_A LRR repeats and ubiquit 94.2 0.034 1.2E-06 46.7 3.7 55 420-478 23-77 (85)
104 3b08_A Polyubiquitin-C, ubiqui 94.1 0.068 2.3E-06 47.6 5.6 66 409-478 77-142 (152)
105 4b4c_A Chromodomain-helicase-D 94.0 0.03 1E-06 53.8 3.5 54 597-652 4-59 (211)
106 1oqy_A HHR23A, UV excision rep 93.9 0.17 5.9E-06 53.8 9.2 78 406-486 5-84 (368)
107 3rt3_B Ubiquitin-like protein 93.7 0.065 2.2E-06 48.9 5.0 68 409-480 3-72 (159)
108 1wgg_A Ubiquitin carboxyl-term 93.6 0.035 1.2E-06 47.9 2.8 66 408-480 7-74 (96)
109 1we6_A Splicing factor, putati 93.6 0.049 1.7E-06 47.7 3.7 67 408-478 27-97 (111)
110 2kj6_A Tubulin folding cofacto 93.6 0.18 6.2E-06 44.1 7.3 69 406-478 12-89 (97)
111 2daf_A FLJ35834 protein; hypot 93.3 0.11 3.7E-06 47.9 5.7 80 405-489 12-93 (118)
112 3u5e_m 60S ribosomal protein L 93.2 0.016 5.3E-07 52.3 0.0 67 410-480 2-68 (128)
113 1uh6_A Ubiquitin-like 5; beta- 92.9 0.15 5E-06 45.5 5.7 66 408-477 28-93 (100)
114 3l0w_B Monoubiquitinated proli 92.0 0.17 5.8E-06 47.9 5.3 66 410-479 2-67 (169)
115 1irz_A ARR10-B; helix-turn-hel 92.0 0.26 9E-06 41.1 5.8 54 596-651 3-61 (64)
116 2kzr_A Ubiquitin thioesterase 92.0 0.046 1.6E-06 45.8 1.2 66 411-478 3-71 (86)
117 2gow_A HCG-1 protein, ubiquiti 91.6 0.14 4.9E-06 46.9 4.1 69 408-477 17-90 (125)
118 1ofc_X ISWI protein; nuclear p 91.5 0.092 3.2E-06 54.9 3.2 54 599-652 211-275 (304)
119 3ai5_A Yeast enhanced green fl 91.3 0.17 5.9E-06 52.8 5.0 67 408-478 233-299 (307)
120 2fnj_B Transcription elongatio 91.2 0.42 1.4E-05 43.7 6.8 74 409-487 3-80 (118)
121 3u5c_f 40S ribosomal protein S 91.1 0.041 1.4E-06 51.8 0.0 67 410-480 2-68 (152)
122 1wgh_A Ubiquitin-like 3, HCG-1 90.5 0.41 1.4E-05 43.4 6.0 68 408-476 16-88 (116)
123 2dzm_A FAS-associated factor 1 90.3 0.22 7.6E-06 43.9 4.0 53 422-477 22-74 (100)
124 2kjr_A CG11242; UBL, ubiquitin 90.0 0.66 2.3E-05 40.3 6.7 70 405-477 12-88 (95)
125 1v6e_A Cytoskeleton-associated 90.0 0.23 7.8E-06 42.4 3.7 68 408-478 7-81 (95)
126 2xag_B REST corepressor 1; ami 89.7 0.21 7.2E-06 55.2 4.1 49 598-651 378-426 (482)
127 4ajy_B Transcription elongatio 88.9 0.53 1.8E-05 43.3 5.4 63 421-487 14-80 (118)
128 3q3f_A Ribonuclease/ubiquitin 88.8 0.3 1E-05 47.6 4.0 67 409-479 106-172 (189)
129 3rt3_B Ubiquitin-like protein 88.6 0.41 1.4E-05 43.6 4.6 67 409-479 82-148 (159)
130 1t0y_A Tubulin folding cofacto 87.8 0.95 3.2E-05 40.5 6.3 68 408-478 6-80 (122)
131 1se9_A Ubiquitin family; ubiqu 87.8 0.51 1.7E-05 43.7 4.6 70 407-477 15-89 (126)
132 3a4r_A Nfatc2-interacting prot 87.7 0.53 1.8E-05 39.3 4.3 74 406-483 5-79 (79)
133 1fex_A TRF2-interacting telome 87.1 0.68 2.3E-05 37.5 4.5 49 600-651 2-58 (59)
134 2io1_B Small ubiquitin-related 86.7 0.73 2.5E-05 39.9 4.8 70 407-480 6-75 (94)
135 2xb0_X Chromo domain-containin 86.5 0.66 2.3E-05 47.8 5.1 54 599-654 2-57 (270)
136 3u30_A Ubiquitin, linear DI-ub 86.4 0.6 2E-05 43.3 4.3 66 409-478 97-162 (172)
137 1wju_A NEDD8 ultimate buster-1 86.3 0.59 2E-05 41.6 4.1 56 420-479 31-86 (100)
138 1wm3_A Ubiquitin-like protein 86.1 0.66 2.2E-05 37.9 4.0 69 408-480 1-69 (72)
139 4a69_C Nuclear receptor corepr 86.0 0.51 1.7E-05 41.4 3.4 45 597-646 40-84 (94)
140 2y9y_A Imitation switch protei 86.0 0.41 1.4E-05 51.4 3.4 54 600-653 228-292 (374)
141 1wjn_A Tubulin-folding protein 86.0 0.68 2.3E-05 39.5 4.2 71 406-479 7-87 (97)
142 3plu_A Ubiquitin-like modifier 85.2 0.62 2.1E-05 41.2 3.6 66 408-479 21-88 (93)
143 4eef_G F-HB80.4, designed hema 83.7 0.37 1.3E-05 41.4 1.4 44 600-647 20-66 (74)
144 4b6w_A Tubulin-specific chaper 82.5 1 3.5E-05 38.3 3.7 66 408-477 2-76 (86)
145 2k8h_A Small ubiquitin protein 81.3 1.6 5.5E-05 39.2 4.7 71 405-479 23-93 (110)
146 2pjh_A Protein NPL4, nuclear p 81.2 0.27 9.3E-06 41.5 -0.3 56 423-479 18-75 (80)
147 2d07_B Ubiquitin-like protein 80.5 1.9 6.3E-05 37.2 4.7 71 406-480 15-85 (93)
148 3shq_A UBLCP1; phosphatase, hy 80.2 0.77 2.6E-05 47.8 2.6 71 408-483 5-78 (320)
149 2io0_B Small ubiquitin-related 79.7 1.5 5.2E-05 37.8 3.9 70 407-480 4-73 (91)
150 3po0_A Small archaeal modifier 78.7 1.2 4E-05 37.3 2.8 47 418-464 17-71 (89)
151 2eke_C Ubiquitin-like protein 73.8 5.7 0.00019 35.5 6.0 72 404-480 27-98 (106)
152 1wz0_A Ubiquitin-like protein 72.7 3 0.0001 37.0 3.9 71 406-480 22-92 (104)
153 2q5w_D Molybdopterin convertin 59.6 3.3 0.00011 33.4 1.4 44 419-464 16-59 (77)
154 4a6q_A Histone deacetylase com 56.1 10 0.00034 36.1 4.2 60 420-479 55-133 (143)
155 3kyd_D Small ubiquitin-related 55.3 13 0.00044 33.9 4.7 72 405-480 37-108 (115)
156 2xzm_9 RPS31E; ribosome, trans 49.2 3.6 0.00012 40.4 0.0 55 411-469 3-57 (189)
157 2jxx_A Nfatc2-interacting prot 48.5 13 0.00043 32.8 3.4 73 405-482 22-96 (97)
158 3goe_A DNA repair protein RAD6 43.7 24 0.0008 30.9 4.2 70 409-481 10-79 (82)
159 2qjl_A URM1, ubiquitin-related 40.2 20 0.00069 30.7 3.3 45 418-462 19-75 (99)
160 1ign_A Protein (RAP1); RAP1,ye 39.4 21 0.00073 36.5 3.8 31 621-655 172-202 (246)
161 1fm0_D Molybdopterin convertin 37.7 35 0.0012 27.5 4.3 44 418-463 16-62 (81)
162 3pge_A SUMO-modified prolifera 32.5 41 0.0014 33.2 4.5 70 406-480 27-96 (200)
163 1wj4_A KIAA0794 protein; UBX d 28.2 1.9E+02 0.0066 26.0 7.9 72 401-477 36-112 (124)
164 1ug2_A 2610100B20RIK gene prod 28.1 42 0.0014 30.0 3.4 52 598-653 31-84 (95)
165 1vjk_A Molybdopterin convertin 27.9 40 0.0014 28.7 3.2 55 409-463 10-79 (98)
166 2xzz_A Protein-glutamine gamma 25.9 22 0.00076 31.3 1.2 18 416-433 3-20 (102)
167 2xag_B REST corepressor 1; ami 25.1 15 0.00052 40.7 0.0 38 601-643 190-227 (482)
168 3dwg_C 9.5 kDa culture filtrat 24.8 62 0.0021 27.0 3.7 40 423-463 21-70 (93)
169 1wgk_A Riken cDNA 2900073H19 p 24.5 36 0.0012 30.5 2.4 44 419-462 30-84 (114)
170 1ofc_X ISWI protein; nuclear p 21.9 80 0.0027 33.1 4.6 49 599-651 109-157 (304)
171 3lqv_P Splicing factor 3B subu 21.4 38 0.0013 26.0 1.5 14 599-612 19-32 (39)
172 2kc2_A Talin-1, F1; FERM, adhe 20.6 1.1E+02 0.0039 28.3 4.9 33 410-442 13-45 (128)
No 1
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.97 E-value=9.4e-32 Score=246.61 Aligned_cols=116 Identities=69% Similarity=1.087 Sum_probs=111.0
Q ss_pred eccCCcccccccccccccCCCcccccCCCCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhch
Q 042386 571 TVPAMSVEALAVVPVHRKSKRSEIVQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLV 650 (699)
Q Consensus 571 ~vp~~~~e~lA~~P~~~K~k~~e~~~RR~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~ 650 (699)
+||+++++++|++|+ +|++.++.++||++++||.||+++|++||++||.|+|+.|+..+|+.|.+||.||||||||||+
T Consensus 3 ~~~~~~~~~~~~~p~-~k~~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnll 81 (122)
T 2roh_A 3 PFADPNSLALANVPL-SRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLV 81 (122)
T ss_dssp CCSCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCcccccccCc-ccCCCcCcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 578888899999999 7888889999999999999999999999999999999999998888899999999999999999
Q ss_pred hccccCccccCCCCCChHHHHHHHHhhhchhHHHHHh
Q 042386 651 HTARISPQQRRGEPVPQELLDRVLTAHAYWTQQQAKQ 687 (699)
Q Consensus 651 K~a~i~pq~rr~~~iP~ell~RV~~~~ayw~q~q~kq 687 (699)
|.+.++|+.+++.++|+||++||++||+||.+||+||
T Consensus 82 k~~~~~p~~kr~~~~p~e~~~~v~~~h~~~g~~~~~~ 118 (122)
T 2roh_A 82 HTASIAPQQRRGAPVPQELLDRVLAAQAYWSVDSSGR 118 (122)
T ss_dssp HHHHSCTTTCCCSSCCHHHHHHHHHHHHHHHSSCSCC
T ss_pred hhccCCccccCCCCCCHHHHHHHHHHHHHHhhHHhhh
Confidence 9999999999999999999999999999999999886
No 2
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.97 E-value=1.4e-31 Score=239.89 Aligned_cols=100 Identities=83% Similarity=1.225 Sum_probs=93.4
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhccccCccccCCCCCChHHHH
Q 042386 592 SEIVQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLD 671 (699)
Q Consensus 592 ~e~~~RR~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a~i~pq~rr~~~iP~ell~ 671 (699)
++.++||++++||.||+++|++||++||.|+|+.|+..+|+.|.+||.||||||||||+|.+.++|+.+++.++|++||+
T Consensus 5 ~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~ 84 (105)
T 2aje_A 5 LEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLN 84 (105)
T ss_dssp ----CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHH
T ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHH
Confidence 34578899999999999999999999999999999998887889999999999999999999999999999999999999
Q ss_pred HHHHhhhchhHHHHHhhccc
Q 042386 672 RVLTAHAYWTQQQAKQQFKQ 691 (699)
Q Consensus 672 RV~~~~ayw~q~q~kqq~k~ 691 (699)
||++|||||++||+|||.++
T Consensus 85 rv~~~~~~~~~~~~~~~~~~ 104 (105)
T 2aje_A 85 RVLNAHGYWTQQQMQQLQQN 104 (105)
T ss_dssp HHHHHHHHHHHHTTTTSSSC
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999876
No 3
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.95 E-value=1.3e-28 Score=225.52 Aligned_cols=108 Identities=83% Similarity=1.289 Sum_probs=103.8
Q ss_pred cccccCCCcccccCCCCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhccccCccccCCC
Q 042386 584 PVHRKSKRSEIVQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGE 663 (699)
Q Consensus 584 P~~~K~k~~e~~~RR~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a~i~pq~rr~~ 663 (699)
|+++|+++++.+.||++++||.||+++|++||++||.|+|+.|+..+++.|.+||.||||||||||++.+.++|+.+++.
T Consensus 1 ~~~~k~~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~ 80 (121)
T 2juh_A 1 PVNQKSKRSELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGE 80 (121)
T ss_dssp CCCCCCCCCCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCS
T ss_pred CCcccCCCccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCC
Confidence 78899999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhhhchhHHHHHhhccc
Q 042386 664 PVPQELLDRVLTAHAYWTQQQAKQQFKQ 691 (699)
Q Consensus 664 ~iP~ell~RV~~~~ayw~q~q~kqq~k~ 691 (699)
++|+++++||++||+||.++|+|+|...
T Consensus 81 ~~p~e~~~rv~~~h~~~gn~~~~~~~~~ 108 (121)
T 2juh_A 81 PVPQDLLDRVLAAHAYWSQQQGKQHVEP 108 (121)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCCSCCCS
T ss_pred CCCHHHHHHHHHHHHHHccchhccCCcc
Confidence 9999999999999999999999987654
No 4
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.94 E-value=2.7e-27 Score=204.11 Aligned_cols=83 Identities=89% Similarity=1.409 Sum_probs=80.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhccccCccccCCCCCChHHHHHHHHhhhch
Q 042386 601 RPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLTAHAYW 680 (699)
Q Consensus 601 r~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a~i~pq~rr~~~iP~ell~RV~~~~ayw 680 (699)
++||.||+++|++||++||.|+|++|+..+|+.|.+||.+|||||||||+|.+.++|+++++.|+|++|++||++|||||
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~~ 80 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAYW 80 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999998887899999999999999999999999999999999999999999999999
Q ss_pred hHH
Q 042386 681 TQQ 683 (699)
Q Consensus 681 ~q~ 683 (699)
+||
T Consensus 81 ~~~ 83 (83)
T 2ckx_A 81 SQQ 83 (83)
T ss_dssp HHC
T ss_pred hcC
Confidence 975
No 5
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.69 E-value=1.6e-17 Score=137.15 Aligned_cols=56 Identities=27% Similarity=0.423 Sum_probs=50.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhccc
Q 042386 597 RRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTAR 654 (699)
Q Consensus 597 RR~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a~ 654 (699)
.+.+++||+||+++|++||++||. +|++|+..|. .|.+||.||||||||||.|...
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~-f~~~RT~VdLKdk~r~L~k~~~ 60 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFP-FQKGRRAVDLAHKYHRLISGPS 60 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSC-CCTTCCHHHHHHHHHHHHTCSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCC-CccCcccchHHHHHHHHHhccc
Confidence 457889999999999999999999 9999998754 4899999999999999998653
No 6
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.37 E-value=4.3e-13 Score=110.24 Aligned_cols=54 Identities=28% Similarity=0.509 Sum_probs=47.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhcc
Q 042386 598 RIRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTA 653 (699)
Q Consensus 598 R~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a 653 (699)
+++++||.||.++|+++|++||.|+|+.|...+ .|..||.++++|+|+||.|.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~--~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNY--PFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHS--CCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhc--CCCCCCHHHHHHHHHHHhccC
Confidence 356789999999999999999999999998753 367899999999999999853
No 7
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.18 E-value=1.9e-11 Score=95.92 Aligned_cols=52 Identities=33% Similarity=0.602 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhc
Q 042386 599 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHT 652 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~ 652 (699)
++.+||.||.++|+++|++||.|+|+.|... + .|..||.++++|+|+|++|.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~-~-~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLH-Y-KFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHH-S-CCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHH-c-CCCCCCHHHHHHHHHHHHcc
Confidence 3579999999999999999999999999875 3 24589999999999999984
No 8
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.16 E-value=2.9e-11 Score=99.54 Aligned_cols=58 Identities=31% Similarity=0.546 Sum_probs=50.6
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhccc
Q 042386 595 VQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTAR 654 (699)
Q Consensus 595 ~~RR~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a~ 654 (699)
..++++.+||.||.++|+++|++||.|+|+.|... + .|..||.++++++|+|+++-.-
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~-~-~~~~Rt~~qcr~Rw~~~l~p~i 62 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLH-Y-KFNNRTSVMLKDRWRTMKKLKL 62 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHH-S-CCSSCCHHHHHHHHHHHHHTSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHH-c-CcCCCCHHHHHHHHHHHcCCCC
Confidence 45678899999999999999999999999999874 3 2458999999999999998543
No 9
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.67 E-value=2e-08 Score=78.11 Aligned_cols=48 Identities=25% Similarity=0.482 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchh
Q 042386 600 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVH 651 (699)
Q Consensus 600 rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K 651 (699)
+.+||.||.+.|+++|++||.++|+.|-.. |..||..+.+++|.+++.
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~----~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANY----LPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHT----STTCCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHH----cCCCCHHHHHHHHHHHcC
Confidence 569999999999999999999999999863 578999999999999874
No 10
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.59 E-value=4.1e-08 Score=78.46 Aligned_cols=50 Identities=18% Similarity=0.304 Sum_probs=45.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchh
Q 042386 598 RIRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVH 651 (699)
Q Consensus 598 R~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K 651 (699)
..+.+||.||.+.|+++|++||.++|..|-.. |..||..+++++|.++++
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~----~~~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASH----FPNRTDQQCQYRWLRVLS 55 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHH----CSSSCHHHHHHHHHHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH----ccCCCHHHHHHHHHHHcC
Confidence 35679999999999999999999999999874 478999999999999876
No 11
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.55 E-value=7.3e-08 Score=75.01 Aligned_cols=48 Identities=23% Similarity=0.526 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchh
Q 042386 600 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVH 651 (699)
Q Consensus 600 rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K 651 (699)
+.+||.||.+.|+++|++||.++|..|-.. +..||..+.+++|.|.+.
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~----~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKH----LKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTT----STTCCHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHH----cCCCCHHHHHHHHHHHcC
Confidence 569999999999999999999999999863 578999999999999864
No 12
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.40 E-value=1.7e-07 Score=75.33 Aligned_cols=50 Identities=22% Similarity=0.320 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhc
Q 042386 599 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHT 652 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~ 652 (699)
.+.+||.||.+.|+++|++||.++|..|-.. +..||..+.+++|.++...
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~----~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFGNWQDVANQ----MCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTTCHHHHHHH----HTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCcHHHHHHH----hCCCCHHHHHHHHHHHccC
Confidence 5679999999999999999999999999874 3679999999999998753
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=2.9e-07 Score=75.75 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=45.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchh
Q 042386 597 RRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVH 651 (699)
Q Consensus 597 RR~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K 651 (699)
..++.+||.||.+.|+++|++||.++|..|-.. +..||..+.+++|.|.++
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~----l~~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGKNQWSRIASL----LHRKSAKQCKARWYEWLD 56 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHH----STTCCHHHHHHHHHHTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHH----hcCCCHHHHHHHHHHHcC
Confidence 345679999999999999999999999999874 468999999999999875
No 14
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.33 E-value=3.1e-07 Score=73.60 Aligned_cols=47 Identities=26% Similarity=0.402 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCC-CCCchhhhhhhhhch
Q 042386 600 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAK-HRTYVDLKDKWKTLV 650 (699)
Q Consensus 600 rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~-~RT~VDLKDKWRNL~ 650 (699)
+.+||.+|.+.|+++|++||.++|..|-.. +. .||..+.+++|.++.
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~~----~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIADY----VGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHHH----HCSSCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHH----HCCCCCHHHHHHHHHHHc
Confidence 458999999999999999999999999763 35 899999999998863
No 15
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.25 E-value=7.7e-07 Score=76.00 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=44.6
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhch
Q 042386 595 VQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLV 650 (699)
Q Consensus 595 ~~RR~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~ 650 (699)
..+..+.+||.||.+.|++||++|| ++|..|-.. +..||..+.+.+|.++.
T Consensus 13 ~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~----v~~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 13 KGASAGREWTEQETLLLLEALEMYK-DDWNKVSEH----VGSRTQDECILHFLRLP 63 (79)
T ss_dssp CSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHH----HSSCCHHHHHHHHTTSC
T ss_pred cccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHH----cCCCCHHHHHHHHHHhc
Confidence 3455678999999999999999999 999999873 35799999999999983
No 16
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.18 E-value=9.5e-07 Score=73.25 Aligned_cols=49 Identities=20% Similarity=0.370 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhc
Q 042386 599 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHT 652 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~ 652 (699)
.+.+||.||.+.|+++|++||. +|+.|-.. |..||..++|.+|.++.+.
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~----~~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGR-RWTKISKL----IGSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCS-CHHHHHHH----HSSSCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCc-CHHHHHHH----cCCCCHHHHHHHHHHHHHH
Confidence 5669999999999999999999 99999872 4789999999999998764
No 17
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.12 E-value=5.6e-06 Score=72.18 Aligned_cols=75 Identities=17% Similarity=0.428 Sum_probs=54.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhccccCccccCCCCCChH--HHHH-HHHh
Q 042386 600 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQE--LLDR-VLTA 676 (699)
Q Consensus 600 rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a~i~pq~rr~~~iP~e--ll~R-V~~~ 676 (699)
+.+||.||.+.|+++|++||.++|..|-. .+..||..+.+++|+|.+. |...++.-.+.| +|.+ |...
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~----~l~~Rt~~qcr~Rw~~~l~-----p~~~~~~Wt~eEd~~L~~~~~~~ 74 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAK----HLKGRIGKQCRERWHNHLN-----PEVKKTSWTEEEDRIIYQAHKRL 74 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTCHHHHHT----TSTTCCHHHHHHHHHHTTC-----CCCCCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcHHHHhh----hhcCCCHHHHHHHHHhccC-----CcccccCCCHHHHHHHHHHHHHh
Confidence 56899999999999999999999999975 3578999999999999764 444444433332 2333 3333
Q ss_pred hhchhHH
Q 042386 677 HAYWTQQ 683 (699)
Q Consensus 677 ~ayw~q~ 683 (699)
-+-|..-
T Consensus 75 G~~W~~I 81 (105)
T 1gv2_A 75 GNRWAEI 81 (105)
T ss_dssp SSCHHHH
T ss_pred CCCHHHH
Confidence 3567544
No 18
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.10 E-value=2.5e-06 Score=77.29 Aligned_cols=55 Identities=24% Similarity=0.464 Sum_probs=46.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhccccCcc
Q 042386 599 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARISPQ 658 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a~i~pq 658 (699)
.+.+||.||.+.|+++|++||. +|+.|-. .|.+||..++|++|++|.+...++..
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~----~l~gRt~~~~k~rw~~l~~k~~~p~~ 115 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGR-QWAIIAK----FFPGRTDIHIKNRWVTISNKLGIPQT 115 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHHT----TSTTCCHHHHHHHHHHHHHHTTC---
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHHH----HcCCCCHHHHHHHHHHHHHhcCCCCC
Confidence 4458999999999999999995 8999976 35789999999999999998888744
No 19
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=1.8e-06 Score=71.74 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC-----CchHHHhhhccCCCCCCCchhhhhhhhhchh
Q 042386 599 IRRPFSVAEVEALVQAVEKLGT-----GRWRDVKLRAFDNAKHRTYVDLKDKWKTLVH 651 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~-----GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K 651 (699)
.+.+||.||.+.|+++|++||. ++|..|-.. +..||..+.+++|.+++.
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~----~~~Rt~~qcr~r~~~~l~ 60 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADE----LGNRTAKQVASQVQKYFI 60 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHH----HSSSCHHHHHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHH----hCCCCHHHHHHHHHHHHH
Confidence 4569999999999999999997 899999763 367999999999977665
No 20
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.08 E-value=2e-06 Score=72.77 Aligned_cols=49 Identities=20% Similarity=0.322 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhcc
Q 042386 599 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTA 653 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a 653 (699)
.+.+||+||.+.|++.|++||. +|+.|-.. | .||..++|++|+.|.+.+
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~----l-gRt~~q~knRw~~L~~~~ 70 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHGN-DWATIGAA----L-GRSASSVKDRCRLMKDTC 70 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHSS-CHHHHHHH----H-TSCHHHHHHHHHHCSCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCC-CHHHHHHH----h-CCCHHHHHHHHHHHHHHc
Confidence 5569999999999999999998 59999773 4 899999999999988754
No 21
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.02 E-value=8e-06 Score=73.76 Aligned_cols=77 Identities=18% Similarity=0.437 Sum_probs=55.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhccccCccccCCCCCChH--HHHH-HHH
Q 042386 599 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQE--LLDR-VLT 675 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a~i~pq~rr~~~iP~e--ll~R-V~~ 675 (699)
.+.+||.||.+.|+++|++||.++|..|-.. +..||..+.+++|.|.+. |...++.-.+.| +|.+ |..
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~----l~~Rt~~qcr~Rw~~~l~-----p~~~~~~WT~eEd~~L~~~~~~ 96 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKH----LKGRIGKQCRERWHNHLN-----PEVKKTSWTEEEDRIIYQAHKR 96 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHH----SSSCCHHHHHHHHHHTTC-----SSSCCSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH----hcCCcHHHHHHHHHHhcc-----cccccccCCHHHHHHHHHHHHH
Confidence 4569999999999999999999999999863 478999999999999764 333444333333 2333 333
Q ss_pred hhhchhHHH
Q 042386 676 AHAYWTQQQ 684 (699)
Q Consensus 676 ~~ayw~q~q 684 (699)
.-+-|..=.
T Consensus 97 ~G~~W~~Ia 105 (128)
T 1h8a_C 97 LGNRWAEIA 105 (128)
T ss_dssp HCSCHHHHG
T ss_pred HCcCHHHHH
Confidence 336675443
No 22
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=97.97 E-value=6.3e-06 Score=71.83 Aligned_cols=49 Identities=22% Similarity=0.460 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhc
Q 042386 599 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHT 652 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~ 652 (699)
.+.+||.||.+.|+++|++||. +|+.|-. .|.+||..++|++|+++++.
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~----~l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAK----LLPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSS-CHHHHHT----TCTTCCHHHHHHHHHHHTC-
T ss_pred cccCCCHHHHHHHHHHHHHhCC-CHHHHHH----HcCCCCHHHHHHHHHHHHhc
Confidence 4569999999999999999996 9999975 35789999999999999873
No 23
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=97.96 E-value=1.6e-05 Score=72.04 Aligned_cols=50 Identities=24% Similarity=0.476 Sum_probs=44.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchh
Q 042386 597 RRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVH 651 (699)
Q Consensus 597 RR~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K 651 (699)
..++.+||.||.+.|+++|++||. +|..|-. .+..||..+..++|+|.+.
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~----~~~~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAA----TFPNRNARQCRDRWKNYLA 57 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHH----TCTTCCHHHHHHHHHHHTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHH----HcCCCCHHHHHHHHhhhcc
Confidence 345679999999999999999998 9999976 3578999999999999764
No 24
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.95 E-value=1.7e-05 Score=69.77 Aligned_cols=75 Identities=23% Similarity=0.394 Sum_probs=54.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhccccCccccCCCCCChH--HHHH-HHHhh
Q 042386 601 RPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQE--LLDR-VLTAH 677 (699)
Q Consensus 601 r~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a~i~pq~rr~~~iP~e--ll~R-V~~~~ 677 (699)
.+||.||.+.|+++|++||.++|..|-.. +..||..+..++|.|.+. |...++.-.+.| +|.+ |...-
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~----~~~Rt~~qcr~Rw~~~L~-----p~i~~~~WT~eEd~~L~~~~~~~G 72 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQL----MITRNPRQCRERWNNYIN-----PALRTDPWSPEEDMLLDQKYAEYG 72 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHH----TTTSCHHHHHHHHHHHSS-----SCCTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhh----cCCCCHHHHHHHHHHHHc-----ccccccccCHHHHHHHHHHHHHhC
Confidence 58999999999999999999999999763 468999999999999764 343444433333 2333 33333
Q ss_pred hchhHHH
Q 042386 678 AYWTQQQ 684 (699)
Q Consensus 678 ayw~q~q 684 (699)
+-|..-.
T Consensus 73 ~~W~~Ia 79 (107)
T 2k9n_A 73 PKWNKIS 79 (107)
T ss_dssp SCHHHHH
T ss_pred cCHHHHH
Confidence 5675543
No 25
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=7.2e-06 Score=66.70 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchh
Q 042386 599 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVH 651 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K 651 (699)
.+.+||.||.+.|+++|++||. +|..|-. . ..||..+.+++|.++++
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~----~gRt~~qcr~Rw~~~l~ 54 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT-QWRTIAP-I----IGRTAAQCLEHYEFLLD 54 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-H----HSSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-c----cCcCHHHHHHHHHHHhC
Confidence 4568999999999999999999 9999987 2 24999999999999986
No 26
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=97.88 E-value=1.9e-05 Score=71.87 Aligned_cols=50 Identities=20% Similarity=0.458 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhcc
Q 042386 599 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTA 653 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a 653 (699)
.+.+||.||.+.|+++|.+||. +|+.|-. .|.+||..++|++|+++++..
T Consensus 53 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~----~l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 53 VKHAWTPEEDETIFRNYLKLGS-KWSVIAK----LIPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp CCSCCCHHHHHHHHHHHHHSCS-CHHHHTT----TSTTCCHHHHHHHHHHTTGGG
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHH----HcCCCCHHHHHHHHHHHHHHH
Confidence 3458999999999999999995 9999975 357999999999999998754
No 27
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.86 E-value=7.6e-06 Score=72.05 Aligned_cols=49 Identities=20% Similarity=0.439 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhc
Q 042386 599 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHT 652 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~ 652 (699)
.+.+||.||.+.|+++|.+||. +|+.|-.. |..||..++|++|++|.+.
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGP-KWNKISKF----LKNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS-CHHHHHHH----HSSSCHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCc-CHHHHHHH----CCCCCHHHHHHHHHHHHhh
Confidence 4569999999999999999997 99999863 4789999999999999874
No 28
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=97.86 E-value=1.3e-05 Score=72.46 Aligned_cols=49 Identities=22% Similarity=0.453 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhc
Q 042386 599 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHT 652 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~ 652 (699)
.+.+||.||.+.|+++|++||. +|+.|-. .|..||..++|++|+++++.
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~----~l~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAK----LLPGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHGG----GSTTCCHHHHHHHHHTTTTC
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHHH----HCCCCCHHHHHHHHHHHHhc
Confidence 4569999999999999999996 9999986 35789999999999999874
No 29
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=97.85 E-value=2.3e-05 Score=71.29 Aligned_cols=74 Identities=20% Similarity=0.402 Sum_probs=53.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhccccCccccCCCCCChH--HHHH-HHHh
Q 042386 600 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQE--LLDR-VLTA 676 (699)
Q Consensus 600 rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a~i~pq~rr~~~iP~e--ll~R-V~~~ 676 (699)
+.+||.||.+.|+++|++||.++|..|-. .+.+||..+..++|+|.+. |...++.-.+.| +|.+ |...
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~----~~~~Rt~~qcr~Rw~~~l~-----p~~~~~~Wt~eEd~~L~~~~~~~ 72 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITS----FLPNRSPKQCRERWFNHLD-----PAVVKHAWTPEEDETIFRNYLKL 72 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTT----SCTTSCHHHHHHHHHHHTS-----TTCCCSCCCHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHH----HHCCCCHHHHHHHHhhccC-----ccccCCCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999999999965 3578999999999999764 344444434333 2323 3333
Q ss_pred hhchhH
Q 042386 677 HAYWTQ 682 (699)
Q Consensus 677 ~ayw~q 682 (699)
-+-|.+
T Consensus 73 G~~W~~ 78 (131)
T 3zqc_A 73 GSKWSV 78 (131)
T ss_dssp CSCHHH
T ss_pred CcCHHH
Confidence 355644
No 30
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.78 E-value=4.4e-05 Score=71.13 Aligned_cols=77 Identities=18% Similarity=0.434 Sum_probs=55.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhccccCccccCCCCCChH--HHHH-HHH
Q 042386 599 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQE--LLDR-VLT 675 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a~i~pq~rr~~~iP~e--ll~R-V~~ 675 (699)
.+.+||.||.+.|+++|++||.++|..|-. .+..||..+.+++|.|++. |..+++.-.+.| +|.+ +..
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~----~l~~Rt~~qcr~Rw~~~l~-----p~~~~~~WT~eEd~~L~~~~~~ 127 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAK----HLKGRIGKQCRERWHNHLN-----PEVKKTSWTEEEDRIIYQAHKR 127 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHH----TSTTCCHHHHHHHHHHTTC-----TTSCCSCCCHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHH----HcCCCCHHHHHHHHHHHhC-----ccccccCCChHHHHHHHHHHHH
Confidence 457999999999999999999999999976 3578999999999999764 343444433333 2322 334
Q ss_pred hhhchhHHH
Q 042386 676 AHAYWTQQQ 684 (699)
Q Consensus 676 ~~ayw~q~q 684 (699)
.-+-|.+=.
T Consensus 128 ~g~~W~~Ia 136 (159)
T 1h89_C 128 LGNRWAEIA 136 (159)
T ss_dssp HCSCHHHHH
T ss_pred HCCCHHHHH
Confidence 446676543
No 31
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.77 E-value=1.7e-05 Score=67.08 Aligned_cols=52 Identities=17% Similarity=0.305 Sum_probs=44.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC---CchHHHhhhccCCCCCCCchhhhhhhhhchhc
Q 042386 597 RRIRRPFSVAEVEALVQAVEKLGT---GRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHT 652 (699)
Q Consensus 597 RR~rr~WT~eEveaLv~GVekyG~---GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~ 652 (699)
+-.+.+||.+|..+|+++|.+||. .+|..|-.. +..||..+.+.+|.+|++-
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~----vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARC----VPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGG----CSSSCHHHHHHHHHHHHSS
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH----cCCCCHHHHHHHHHHHHHc
Confidence 335679999999999999999994 589999763 4689999999999999863
No 32
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.67 E-value=6.4e-05 Score=67.23 Aligned_cols=78 Identities=22% Similarity=0.317 Sum_probs=61.8
Q ss_pred eeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHh--cCccE----------EEEEeecccccCcchhhhhhcccC
Q 042386 408 HVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAIL--GGGLR----------VGVLLQGKKVKDDNKTLLQTGISH 475 (699)
Q Consensus 408 ~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtail--ggglr----------VgvllqGKkV~dD~kTL~q~GIs~ 475 (699)
-.++.||...=-++-|||+.+|||+.||..|.+....-. .+|-+ .-+..+||++.||++||...||..
T Consensus 7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~ 86 (105)
T 1v2y_A 7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRN 86 (105)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCS
T ss_pred cEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCC
Confidence 489999998888999999999999999999999874322 34422 346689999999999999999986
Q ss_pred CCCCCCccccccc
Q 042386 476 DNQKDVLGFSLEP 488 (699)
Q Consensus 476 ~~~ld~lgf~LEp 488 (699)
+.. |-|++--
T Consensus 87 g~~---l~lv~~l 96 (105)
T 1v2y_A 87 RDE---VSFIKKL 96 (105)
T ss_dssp SEE---EEEEECS
T ss_pred CCE---EEEEehh
Confidence 544 5666643
No 33
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=96.77 E-value=8.5e-06 Score=70.55 Aligned_cols=52 Identities=10% Similarity=0.172 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhcccc
Q 042386 599 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARI 655 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a~i 655 (699)
.+.+||.||.+.|+++|++||. +|..|-. .|..||..++|..|.++.+...+
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~----~l~gRt~~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGR-NWSAIAR----MVGSKTVSQCKNFYFNYKKRQNL 66 (89)
Confidence 3458999999999999999999 8999975 35789999999999999886544
No 34
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.57 E-value=6.1e-05 Score=70.20 Aligned_cols=49 Identities=22% Similarity=0.460 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhc
Q 042386 599 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHT 652 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~ 652 (699)
.+.+||.||.+.|+++|++||. +|+.|-. .|.+||..++|.+|+.|++.
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia~----~l~gRt~~~~knr~~~~~r~ 157 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAK----LLPGRTDNAIKNHWNSTMRR 157 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHHT----TSTTCCHHHHHHHHHTTTCC
T ss_pred cccCCChHHHHHHHHHHHHHCC-CHHHHHH----HCCCCCHHHHHHHHHHHHhc
Confidence 4679999999999999999996 9999986 35899999999999999874
No 35
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=97.21 E-value=0.00023 Score=62.77 Aligned_cols=49 Identities=29% Similarity=0.479 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CchHHHhhhccCCCCCCCchhhhhhhhhchhc
Q 042386 600 RRPFSVAEVEALVQAVEKLGT---GRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHT 652 (699)
Q Consensus 600 rr~WT~eEveaLv~GVekyG~---GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~ 652 (699)
..+||.||.+.|++++.+||. .+|..|-.. +..||.-+.+.+|.+|+..
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~----vpGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARA----VEGRTPEEVKKHYEILVED 59 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHH----STTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH----cCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999984 579999873 4679999999999999753
No 36
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.02 E-value=0.00077 Score=54.50 Aligned_cols=53 Identities=8% Similarity=-0.009 Sum_probs=45.0
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhc
Q 042386 595 VQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHT 652 (699)
Q Consensus 595 ~~RR~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~ 652 (699)
..|+...+||++|.+.+++|+.+||. +|..|-. .+..||..++...|....|.
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~----~l~~rt~~~~v~~Yy~~Kk~ 59 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIAS----YLERKSVPDCVLYYYLTKKN 59 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHH----HCTTSCHHHHHHHHHHHTCC
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHH----HcCCCCHHHHHHHHHHhcCC
Confidence 45677889999999999999999996 9999974 25789999999988766553
No 37
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=97.00 E-value=0.0011 Score=55.92 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=55.4
Q ss_pred CceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCC
Q 042386 406 DSHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 406 d~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
-+|+|+.||.++=-+..|||+.++||+.||..+.+.. .|--. +..+++.||.+-+|++||...||..+..
T Consensus 8 ~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~--~QrLi~~Gk~lL~D~~tL~~y~I~~gs~ 77 (84)
T 2kk8_A 8 HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQ-HIPVS--KQTLIVDGIVILREDLTVEQCQIVPTSD 77 (84)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHH-TCCGG--GEEEEETTEECCCSSSBHHHHTCCTTSC
T ss_pred cCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHH-CcChH--HEEEEECCEEecCCcCCHHHcCCCCCCE
Confidence 3589999999988888999999999999999998875 22211 4456788986246789999999976543
No 38
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.98 E-value=0.00038 Score=59.13 Aligned_cols=66 Identities=23% Similarity=0.349 Sum_probs=53.2
Q ss_pred ceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCC
Q 042386 407 SHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 407 ~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
..+++.||...=-...|||+.+.||+.||..|.+.. -. +..+++.||.+.||++||.+.||..+..
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~----~~--~qrLi~~Gk~L~D~~~tL~~y~i~~g~~ 71 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ----ES--QMKLIYQGRLLQDPARTLSSLNITNNCV 71 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST----TT--TCEEEETTEECCCSSCBTTTTTCCTTEE
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC----cC--cEEEEECCEEccCCcCCHHHcCCCCCCE
Confidence 358888987655567899999999999999998765 33 4446889999988889999999976643
No 39
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.96 E-value=0.00071 Score=59.98 Aligned_cols=50 Identities=20% Similarity=0.311 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchHHHhhhcc-CCCCCCCchhhhhhhhhchh
Q 042386 601 RPFSVAEVEALVQAVEKLGTGRWRDVKLRAF-DNAKHRTYVDLKDKWKTLVH 651 (699)
Q Consensus 601 r~WT~eEveaLv~GVekyG~GkW~~Il~~~~-~~f~~RT~VDLKDKWRNL~K 651 (699)
.+||.||++.|.+-+++||. +|..|-..+. ..+..||-.|||++|..+.+
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 59999999999999999998 9999998653 23468999999999988876
No 40
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.93 E-value=0.0013 Score=53.26 Aligned_cols=69 Identities=26% Similarity=0.372 Sum_probs=51.9
Q ss_pred ceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 407 SHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 407 ~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
..+++.||+..=-.+.|+|+.++||+.||..|.+.. .|--.- .-+++.||.. +|++||.+.||..+..+
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~-~i~~~~--qrL~~~gk~L-~d~~tL~~~~i~~g~~i 74 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKL-NVPVRQ--QRLLFKGKAL-ADGKRLSDYSIGPNSKL 74 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHT-CCCTTT--CEEEETTEEC-CTTSBGGGGTCCSSBCC
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CcCHHH--EEEEECCeEC-CCCCcHHHcCCCCCCEE
Confidence 358888887654567799999999999999998754 232233 3457788877 56799999999877654
No 41
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.83 E-value=0.0019 Score=56.21 Aligned_cols=70 Identities=17% Similarity=0.263 Sum_probs=52.9
Q ss_pred CCceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 405 RDSHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 405 ~d~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
.+..+++.||...= ...|||+.+.||+.||..|.+.. .|--. +.-+++.||.+ +|++||.+.||..+..|
T Consensus 14 ~~~~m~I~Vk~~~g-~~~l~v~~~~TV~~LK~~I~~~~-gip~~--~qrLi~~Gk~L-~D~~tL~~~gi~~g~~i 83 (106)
T 1wx7_A 14 DPHLIKVTVKTPKD-KEDFSVTDTCTIQQLKEEISQRF-KAHPD--QLVLIFAGKIL-KDPDSLAQCGVRDGLTV 83 (106)
T ss_dssp CSSEEEEEEECSSC-EEEEEEETTCCHHHHHHHHHHHH-TCCTT--TEEEEETTEEC-CTTSCHHHHTCCTTEEE
T ss_pred CCceEEEEEEeCCC-cEEEEECCCCcHHHHHHHHHHHH-CcChh--hEEEEECCEEC-CCcCcHHHcCCCCCCEE
Confidence 46679999998653 35799999999999999998764 33333 34457788876 56799999999865443
No 42
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=96.76 E-value=0.0018 Score=51.31 Aligned_cols=65 Identities=17% Similarity=0.375 Sum_probs=48.0
Q ss_pred EEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCC
Q 042386 410 KLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 410 Kl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
++.||+..=-.+.|+|+.++||+.||..+.+.. .|--. +.-+++.||.. +|++||...||..+..
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~-~i~~~--~q~L~~~g~~L-~d~~tL~~~~i~~g~~ 66 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPD--QQRLIFAGKQL-EDGRTLSDYNIQREST 66 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHH-CCCGG--GEEEEETTEEC-CTTCBTGGGTCCTTCE
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHH-CcCHH--HeEEEECCeEC-CCCCcHHHcCCCCCCE
Confidence 455666544456799999999999999998865 22222 45567788877 5679999999987654
No 43
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=96.70 E-value=0.002 Score=55.45 Aligned_cols=70 Identities=21% Similarity=0.264 Sum_probs=53.7
Q ss_pred cCCceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCC
Q 042386 404 SRDSHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDN 477 (699)
Q Consensus 404 s~d~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~ 477 (699)
+-+..+++.||+..= ...|||+.++||+.||..|.+.. .|--. +.-+++.||...||++||.+.||..+.
T Consensus 11 ~~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~-gip~~--~QrLi~~Gk~L~D~~~tL~~ygI~~gs 80 (94)
T 2kan_A 11 AAVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVE-NTPIK--RMQLYYSGIELADDYRNLNEYGITEFS 80 (94)
T ss_dssp SSSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHS-SSCTT--TEEEEETTEEECCTTSBHHHHTCCTTE
T ss_pred cCCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHH-CcCHH--HEEEEECCEECCCCcccHHHCCCCCCC
Confidence 345569999999875 67899999999999999998764 22222 445678898886666999999997654
No 44
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=96.69 E-value=0.0016 Score=53.04 Aligned_cols=69 Identities=19% Similarity=0.345 Sum_probs=52.1
Q ss_pred ceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 407 SHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 407 ~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
+.+++.||++.=-.+.|+|+.++||+.||..+.+.. .|--. +.-+++.||... |++||...||..+..+
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-~i~~~--~qrL~~~g~~L~-d~~tL~~~~i~~~~~l 70 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPD--QQRLIFAGKQLE-DGRTLSDYNIQKWSTL 70 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH-CCCGG--GCEEEETTEECC-TTSBTGGGTCCTTCEE
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHH-CcChH--HEEEEECCEECC-CCCCHHHcCCCCCCEE
Confidence 357888998876778899999999999999998765 22222 334677887775 5699999999766543
No 45
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.68 E-value=0.0014 Score=55.49 Aligned_cols=68 Identities=19% Similarity=0.256 Sum_probs=51.1
Q ss_pred ceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 407 SHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 407 ~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
..+++.||+. =-++.|||+.++||+.||..|.+.. .|--. +.-+++.||.+ +|++||.+.||..+..|
T Consensus 16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~-gip~~--~qrL~~~Gk~L-~D~~tL~~~gi~~g~~i 83 (96)
T 1wx8_A 16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYL-HCNAD--RLVLIFTGKIL-RDQDILSQRGILDGSTV 83 (96)
T ss_dssp CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHT-CSCTT--TBCCEETTEEC-CTTSCHHHHTCCTTEEE
T ss_pred CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHh-CCCHH--HEEEEECCEEC-CCcCCHHHCCCCCCCEE
Confidence 4689999986 4567899999999999999998764 22222 23357788877 56799999999766543
No 46
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=96.66 E-value=0.0025 Score=50.57 Aligned_cols=65 Identities=25% Similarity=0.329 Sum_probs=47.8
Q ss_pred EEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCC
Q 042386 410 KLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 410 Kl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
++.||+..=-.+.|+|+.++||+.||..+.+.. .|--. +.-+++.||.+ +|++||.+.||..+..
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~-~i~~~--~q~L~~~g~~L-~d~~tL~~~~i~~g~~ 66 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKE-GIPPQ--QQRLIYSGKQM-NDEKTAADYKILGGSV 66 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHH-CCCGG--GEEEEETTEEC-CTTSBGGGGTCCTTCE
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHH-CcChH--HEEEEECCEEC-CCCCcHHHcCCCCCCE
Confidence 456666544456789999999999999998864 23222 44567788877 5679999999987654
No 47
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=96.65 E-value=0.0012 Score=67.22 Aligned_cols=51 Identities=16% Similarity=0.276 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCc-----hHHHhhhccCCCCCCCchhhhhhhhhchhcc
Q 042386 599 IRRPFSVAEVEALVQAVEKLGTGR-----WRDVKLRAFDNAKHRTYVDLKDKWKTLVHTA 653 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~Gk-----W~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a 653 (699)
.+.+||.||.+.|++.|++||..+ |..|-. .+.+||.-.+|++|++.++..
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk----~LpGRT~nsIRnRw~~~L~~~ 62 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH----YVPNHTGNSIRHRFRVYLSKR 62 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTT----TSTTSCHHHHHHHHHHTTGGG
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHH----HcCCCCHHHHHHHHHHHHhhh
Confidence 456999999999999999999864 999975 368999999999999977754
No 48
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.63 E-value=0.0041 Score=56.42 Aligned_cols=69 Identities=20% Similarity=0.320 Sum_probs=53.1
Q ss_pred CCceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCC
Q 042386 405 RDSHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 405 ~d~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
.+..+++.||+. =-.+.|+|+.+.||+.||..|.+.. .|--. +.-+++.||.+ +|++||.+.||..+..
T Consensus 29 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~--~QrLi~~Gk~L-~D~~tL~dygI~~gst 97 (125)
T 1j8c_A 29 EPKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRF-KSQTD--QLVLIFAGKIL-KDQDTLIQHGIHDGLT 97 (125)
T ss_dssp CCCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHH-CSCSS--SEEEEETTEEE-STTSCGGGTTCSSSEE
T ss_pred CCCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHH-CcCcc--eEEEEECCEEc-CCCCCHHHcCCCCCCE
Confidence 345799999987 5567899999999999999998864 22222 44567889887 5679999999976543
No 49
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.63 E-value=0.0021 Score=54.20 Aligned_cols=51 Identities=20% Similarity=0.395 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CchHHHhhhccCCCCCCCchhhhhhhhhchhcccc
Q 042386 600 RRPFSVAEVEALVQAVEKLGT---GRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARI 655 (699)
Q Consensus 600 rr~WT~eEveaLv~GVekyG~---GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a~i 655 (699)
...||.||...|.++|.+|+. .+|..|-.. . .||.-+++.+|..|+....+
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~-l----gRt~~eV~~~y~~L~~d~~~ 61 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHE-L----GRSVTDVTTKAKQLKDSVTC 61 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHH-H----TSCHHHHHHHHHHHHHSCCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHH-h----CCCHHHHHHHHHHHHHhcCc
Confidence 458999999999999999994 579999874 2 59999999999999887544
No 50
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=96.62 E-value=0.0022 Score=52.79 Aligned_cols=70 Identities=23% Similarity=0.302 Sum_probs=53.3
Q ss_pred CCceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCC
Q 042386 405 RDSHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 405 ~d~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
.+..+++.||++.=-.+.|+|+.++||+.||..+.+.. .|--.-. -+++.||.. +|++||...||..+..
T Consensus 9 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gip~~~q--rL~~~G~~L-~d~~tL~~~~i~~~~~ 78 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKE-GIPPQQQ--RLIYSGKQM-NDEKTAADYKILGGSV 78 (88)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGC--CEEETTEEC-CTTSBGGGGTCCTTCE
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHH-CcCHHHE--EEEECCeEC-CCCCcHHHcCCCCCCE
Confidence 44568999998876778899999999999999997764 2222223 356788766 5689999999987653
No 51
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.61 E-value=0.0027 Score=54.17 Aligned_cols=67 Identities=19% Similarity=0.306 Sum_probs=49.2
Q ss_pred EEEEceeecCeeeEEcCCcchhhhHHHHHHHHH--HHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 410 KLRIKSFRVPELFIELPETATVGSLKRRVMEAV--NAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 410 Kl~IKSf~vPEL~IeiPEtATVgSLKrtVmeav--tailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
++.||+..=-+..|||+.++||+.||..|.+.. +.|--. +..+++.||.. +|++||.+.||..+..+
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~--~qrLi~~Gk~L-~D~~tL~~ygI~~g~~i 70 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVA--GQKLIYAGKIL-NDDTALKEYKIDEKNFV 70 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTT--TEEEEETTEEC-CTTSBGGGGTCCSSSEE
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChh--hEEEEECCEEC-CCcCcHHHCCCCCCCEE
Confidence 456666544456789999999999999998874 333323 34567889877 56699999999876544
No 52
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=96.59 E-value=0.0027 Score=50.84 Aligned_cols=66 Identities=21% Similarity=0.256 Sum_probs=48.7
Q ss_pred eEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 409 VKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 409 VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
+++.||+ .=-...|+|+.++||+.||..+.+.. .|--. +.-+++.||... |++||.+.||..+..+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~-~i~~~--~qrL~~~gk~L~-d~~tL~~~~i~~g~~i 70 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKAN-GIPVA--NQRLIYSGKILK-DDQTVESYHIQDGHSV 70 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHH-CCCGG--GEEEEETTEECC-TTSBTGGGTCCTTCEE
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHh-CCCHH--HEEEEECCeEcC-CCCCHHHcCCCCCCEE
Confidence 6677776 44456789999999999999998864 22222 445678888775 5699999999876543
No 53
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.54 E-value=0.0017 Score=55.82 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=52.6
Q ss_pred ccccccCCceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCC
Q 042386 399 HTSFQSRDSHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 399 ~~~~~s~d~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
.+.-.+.+..++|.|| ++=-...|||+.++||+.||..|-+.. .|--.-.| +++.||.. ||. ||...||..+..
T Consensus 8 ~~~~~~~~~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~t-gip~~~Qr--L~~~Gk~L-dd~-tL~~~~i~~g~~ 81 (95)
T 1v86_A 8 DAGGGVGKELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSIT-GLPPAMQK--VMYKGLVP-EDK-TLREIKVTSGAK 81 (95)
T ss_dssp CCCCCCCCCCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHH-CSCSTTCC--CBSSSBCC-SSS-BHHHHCCCTTEE
T ss_pred CCCCCCCCceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHH-CcCHHHeE--EEECCeeC-CcC-cHHHCCCCCCCE
Confidence 3333344456888888 444455689999999999999998875 23222233 46788877 666 999999977654
Q ss_pred CC
Q 042386 479 KD 480 (699)
Q Consensus 479 ld 480 (699)
|.
T Consensus 82 i~ 83 (95)
T 1v86_A 82 IM 83 (95)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 54
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=96.51 E-value=0.0027 Score=51.74 Aligned_cols=68 Identities=18% Similarity=0.393 Sum_probs=51.1
Q ss_pred eeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 408 HVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 408 ~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
.+++.||++.=-.+.|+|+.++||+.||..|.+.. .|--. +.-++..||.. +|++||...||..+..+
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-~ip~~--~qrL~~~g~~L-~d~~tL~~~~i~~~~~i 70 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKE-GIPPD--QQRLIFAGKQL-EDGRTLSDYNIHNHSAL 70 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHH-CCCGG--GEEEEETBEEC-CTTCBTTTTTCCTTCEE
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CCCHH--HEEEEECCeEC-CCCCCHHHCCCCCCCEE
Confidence 47788888776678899999999999999998865 22222 34567788776 56789999999776543
No 55
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=96.33 E-value=0.0036 Score=52.61 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=50.8
Q ss_pred ceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCC
Q 042386 407 SHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 407 ~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
..+++.||+..=-...|||+.++||+.||..|.+.. .|--. +..+++.||.+ +|++||.+.||..+..
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~-gip~~--~qrL~~~Gk~L-~D~~tL~~~~I~~g~~ 70 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLE-GVQDD--LFWLTFEGKPL-EDQLPLGEYGLKPLST 70 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHT-CSCTT--TEEEESSSSCC-CTTSBHHHHHCSTTCE
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHh-CCChh--HEEEEECCEEC-CCCCcHHHcCCCCCCE
Confidence 357888887654566799999999999999998763 22222 34567888877 5679999999976653
No 56
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=96.32 E-value=0.0035 Score=51.34 Aligned_cols=68 Identities=19% Similarity=0.270 Sum_probs=51.0
Q ss_pred eeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHH--HHHhcCccEEEEEeecccccCcchhhhhhcccCCCC
Q 042386 408 HVKLRIKSFRVPELFIELPETATVGSLKRRVMEAV--NAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 408 ~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeav--tailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
.+++.||+..=-...|||+.++||+.||..|.+.. +.|--. +.-+++.||.. +|++||.+.||..+..
T Consensus 5 ~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~--~qrLi~~Gk~L-~D~~tL~~~~i~~g~~ 74 (85)
T 2wyq_A 5 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVA--GQKLIYAGKIL-SDDVPIRDYRIDEKNF 74 (85)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGG--GEEEEETTEEC-CTTSBGGGGCCCTTSE
T ss_pred eEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHH--HeEEEECCEEC-cCCCCHHHcCCCCCCE
Confidence 47788887755566799999999999999998863 222222 34467888876 5679999999977653
No 57
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.29 E-value=0.0055 Score=53.08 Aligned_cols=68 Identities=7% Similarity=0.131 Sum_probs=49.3
Q ss_pred eEEEEceeecC----eeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 409 VKLRIKSFRVP----ELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 409 VKl~IKSf~vP----EL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
+++.||...-- ..-|||+.++||+.||..|.+.. .|--.-.| +++.||...||.+||.+.||..+..|
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~-gip~~~qr--L~~~gk~L~D~~~tL~~ygI~~g~~l 79 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELES-GVPAEEAQ--IVYMEQLLTDDHCSLGSYGLKDGDMV 79 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHT-CCCGGGBC--EEETTEEECCSSSBHHHHTCCTTEEE
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHH-CcChHHeE--EEECCEECCCCcccHHHCCCCCCCEE
Confidence 66666664321 33489999999999999998764 23222333 57889988888899999999876543
No 58
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.28 E-value=0.0046 Score=52.08 Aligned_cols=68 Identities=15% Similarity=0.232 Sum_probs=50.9
Q ss_pred eeEEEEceeecCeeeEEcCCc-----chhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 408 HVKLRIKSFRVPELFIELPET-----ATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 408 ~VKl~IKSf~vPEL~IeiPEt-----ATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
.+++.||+ .=-..-|||+.+ +||+.||..+.+.. .|--.-.| +++.||...||++||.+.||..+..|
T Consensus 7 ~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~-gip~~~qr--L~~~Gk~L~D~~~~L~~~~i~~g~~i 79 (92)
T 1wxv_A 7 GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVI-GVPQSFQK--LIFKGKSLKEMETPLSALGIQDGCRV 79 (92)
T ss_dssp SEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHT-CCCTTTCE--EEETTEEECCSSSBHHHHTCCSSEEE
T ss_pred eEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHH-CcCHHHEE--EEECCeecCCCcccHHHCCCCCCCEE
Confidence 48888886 333456899885 99999999998754 33333444 57889999998999999999765543
No 59
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.27 E-value=0.0045 Score=51.03 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=51.8
Q ss_pred ceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCC
Q 042386 407 SHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 407 ~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
+.+++.||+..=-.+.|||+.++||..||..|.+.. .|--. +.-+++.||.. +|++||.+.||..+..
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gi~~~--~qrL~~~Gk~L-~d~~tL~~~~i~~g~~ 73 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQ-GLPKK--QQQLEFQGQVL-QDWLGLGIYGIQDSDT 73 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHT-CCCTT--TEEEEETTEEC-CSSSBHHHHTCCTTEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHh-CCChH--HEEEEECCEEc-cCCCCHHHCCCCCCCE
Confidence 468899998765677899999999999999998764 22222 33457788876 5679999999976543
No 60
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=96.25 E-value=0.0057 Score=53.13 Aligned_cols=69 Identities=20% Similarity=0.294 Sum_probs=51.8
Q ss_pred CCceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCC
Q 042386 405 RDSHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 405 ~d~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
.+..+++.||+. =-.+.|+|+.++||+.||..|.+.. .|--. +.-+++.||.+ +|++||...||..+..
T Consensus 22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~--~qrLi~~Gk~L-~D~~tL~~~gI~~g~~ 90 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRF-KSHTD--QLVLIFAGKIL-KDQDTLSQHGIHDGLT 90 (101)
T ss_dssp -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHH-TCCGG--GEEEEETTEEE-CTTCCTGGGTCCTTCE
T ss_pred CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHH-CcChh--hEEEEECCEEC-CCcCcHHHcCCCCCCE
Confidence 345699999986 3567799999999999999998764 23222 44567888877 5679999999976543
No 61
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.0033 Score=53.90 Aligned_cols=70 Identities=16% Similarity=0.367 Sum_probs=52.3
Q ss_pred CCceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCC
Q 042386 405 RDSHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 405 ~d~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
.+..+++.||+..=-++.|+|+.++||+.||..|.+.. .|--. +.-+++.||.. +|++||...||..+..
T Consensus 19 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~--~qrLi~~Gk~L-~D~~tL~~~~i~~g~~ 88 (98)
T 4hcn_B 19 QGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE-GIPPD--QQRLIFAGKQL-EDGRTLSDYNIQKEST 88 (98)
T ss_dssp ---CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHH-CCCGG--GCEEEETTEEC-CTTCBSGGGTCCTTEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHh-CCChh--HEEEEECCEEC-CCCCcHHHCCCCCCCE
Confidence 45568999998876778899999999999999998865 22222 23467788776 6789999999976653
No 62
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=96.24 E-value=0.0045 Score=50.31 Aligned_cols=68 Identities=18% Similarity=0.185 Sum_probs=51.1
Q ss_pred ceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCC
Q 042386 407 SHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 407 ~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
...++.||++.=-...|+|+.++||+.||..|.+.. .|--.- .-++..||.. +|++||...||..+..
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gip~~~--qrL~~~G~~L-~d~~tL~~~~i~~~~~ 70 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLE-GVQDDL--FWLTFEGKPL-EDQLPLGEYGLKPLST 70 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHH-TCCGGG--EEEEETTEEC-CTTSBGGGGTCCTTCE
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhc-CCCHHH--EEEEECCEEC-CCCCcHHHCCCCCCCE
Confidence 457888888755567799999999999999997653 333233 3467788776 5679999999987653
No 63
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=96.13 E-value=0.0066 Score=51.04 Aligned_cols=68 Identities=15% Similarity=0.349 Sum_probs=52.0
Q ss_pred ceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCC
Q 042386 407 SHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 407 ~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
..+++.||+..=-.+.|+|+.++||+.||..|.+.. .|--.- .-+++.||.. +|++||...||..+..
T Consensus 16 ~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~--qrL~~~Gk~L-~D~~tL~~~gi~~g~~ 83 (91)
T 3v6c_B 16 GSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKE-GIPPDQ--QRLIFAGKQL-EDGRTLSDYNIQKEST 83 (91)
T ss_dssp CSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGG--CEEEETTEEC-CTTCBTGGGTCCTTCE
T ss_pred CeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhh-CCChhh--EEEEECCeEC-CCcCcHHHCCCCCCCE
Confidence 358899998876778899999999999999998865 222222 3457788776 5669999999977653
No 64
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=96.12 E-value=0.0053 Score=49.87 Aligned_cols=68 Identities=18% Similarity=0.314 Sum_probs=54.0
Q ss_pred eeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 408 HVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 408 ~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
++++.||+..=-++.++|..+.||+.||..+.+.. .|--. +..++..||.+. |++||.+.||..+..+
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~-gi~~~--~qrL~~~G~~L~-d~~tl~~~~i~~~~~i 70 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQ-GVPMN--SLRFLFEGQRIA-DNHTPKELGMEEEDVI 70 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHH-TCCGG--GEEEEETTEECC-TTCCHHHHTCCTTEEE
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHH-CCCcc--cEEEEECCEEeC-CCCCHHHcCCCCCCEE
Confidence 68889998877788999999999999999998864 22222 355688999886 5589999999877644
No 65
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=96.10 E-value=0.008 Score=52.19 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=52.5
Q ss_pred cCCceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCC
Q 042386 404 SRDSHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 404 s~d~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
..+..+++.||+..= ...|||+.++||+.||..|.+.. .|--. +.-+++.||.. +|++||.+.||..+..
T Consensus 18 ~~~~~m~I~Vk~~~g-~~~l~v~~~~TV~~LK~~I~~~~-gip~~--~QrLi~~Gk~L-~D~~tL~~ygI~~gst 87 (100)
T 1yqb_A 18 GSPHLIKVTVKTPKD-KEDFSVTDTCTIQQLKEEISQRF-KAHPD--QLVLIFAGKIL-KDPDSLAQCGVRDGLT 87 (100)
T ss_dssp CCTTEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHH-TCCGG--GEEEEETTEEC-CTTSBHHHHTCCTTCE
T ss_pred CCCCeEEEEEEcCCC-cEEEEECCCCcHHHHHHHHHHHH-CcChh--hEEEEECCEEC-CCcCcHHHCCCCCCCE
Confidence 345569999998653 25789999999999999998764 23222 45567888876 5679999999976543
No 66
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.09 E-value=0.0043 Score=59.68 Aligned_cols=39 Identities=15% Similarity=0.308 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCC
Q 042386 600 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRT 638 (699)
Q Consensus 600 rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT 638 (699)
...||.+|-..|+.||.+||.|+|..|+.+....|..+-
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~ 172 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKI 172 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTS
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccc
Confidence 457999999999999999999999999998864454443
No 67
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=96.08 E-value=0.0069 Score=50.91 Aligned_cols=67 Identities=16% Similarity=0.361 Sum_probs=49.5
Q ss_pred eEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 409 VKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 409 VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
.++.||++.=-.+.|+|+.++||+.||..|.+.. .|--. +.-+++.||.. +|++||...||..+..+
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~-gip~~--~qrL~~~G~~L-~d~~tL~~~~i~~~~~i 68 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPD--QQRLIFAGKQL-EDGRTLSDYNIQKESTL 68 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHH-CCCGG--GEEEEETTEEC-CTTSBTGGGTCCTTCEE
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhh-CCChh--HEEEEECCEEC-CCCCcHHHcCCCCCCEE
Confidence 4567777665567799999999999999998865 22222 34567788776 46789999999766533
No 68
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=96.04 E-value=0.0072 Score=51.55 Aligned_cols=66 Identities=24% Similarity=0.266 Sum_probs=49.2
Q ss_pred ceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCC
Q 042386 407 SHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 407 ~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
..+++.||+ =-++.|||+.++||+.||..|.+.. .|--. +.-+++.||.. +|++||...||..+..
T Consensus 18 ~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~--~qrLi~~Gk~L-~D~~tL~~y~I~~gst 83 (93)
T 2l7r_A 18 GSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLE-GIAPE--DQVVLLAGAPL-EDEATLGQCGVEALTT 83 (93)
T ss_dssp --CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHH-TCCGG--GCEEEETTEEC-CTTSBHHHHTCCSSCE
T ss_pred CcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHh-CcChh--HEEEEECCEEC-CCCCcHHHCCCCCCCE
Confidence 347888888 3567799999999999999998874 23222 33457888876 6789999999976653
No 69
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=95.99 E-value=0.007 Score=51.56 Aligned_cols=66 Identities=17% Similarity=0.359 Sum_probs=47.6
Q ss_pred EEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 410 KLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 410 Kl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
++.||+..=-.+.|+|+.++||+.||..|.+.. .|--. +.-+++.||.+ +|++||.+.||..+..+
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~-gi~~~--~qrL~~~Gk~L-~D~~tL~~~gi~~g~~i 67 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPD--QQRLIFAGKQL-EDGRTLSDYNIQKESTL 67 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHT-CCCGG--GEEEEETTEEC-CTTSBTGGGTCCTTCEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CcChh--hEEEEECCEEC-CCCCCHHHcCCCCCCEE
Confidence 455665443456789999999999999998754 22222 44567788877 56899999999866543
No 70
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=95.94 E-value=0.0086 Score=52.62 Aligned_cols=69 Identities=16% Similarity=0.337 Sum_probs=52.5
Q ss_pred ceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 407 SHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 407 ~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
..+++.||+..=-.+.|+|+.++||+.||..|.+.. .|--. +.-+++.||.+ +|++||.+.||..+..+
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~--~qrLi~~Gk~L-~D~~tL~~~gI~~gs~I 102 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPD--QQRLIFAGKQL-EDGRTLSDYNIQKESTL 102 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHH-CCCTT--TEEEEETTEEC-CSSCBTTTTTCCTTCEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHH-CcCcc--cEEEEECCEEC-CCCCcHHHcCCCCCCEE
Confidence 358889988765667899999999999999998764 23223 34467788877 56899999999876543
No 71
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=95.94 E-value=0.01 Score=52.27 Aligned_cols=68 Identities=16% Similarity=0.345 Sum_probs=53.1
Q ss_pred eeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 408 HVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 408 ~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
.+++.||+..=-++.|+|+.++||+.||..+.+.. .|--. +.-+++.||... |++||...||..+..+
T Consensus 35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~-gip~~--~QrLi~~Gk~L~-D~~tL~~~gI~~gs~I 102 (111)
T 3vdz_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPD--QQRLIFAGKQLE-DGRTLSDYNIQKESTL 102 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHH-CCCGG--GEEEEETTEECC-TTSBTTTTTCCTTCEE
T ss_pred cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHh-CCChH--HEEEEECCEECC-CCCcHHHCCCCCCCEE
Confidence 58899998877778899999999999999998865 12111 566788998775 6789999999766543
No 72
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.91 E-value=0.009 Score=52.28 Aligned_cols=67 Identities=24% Similarity=0.389 Sum_probs=51.5
Q ss_pred ceeEEEEceeec---CeeeEEcCC---------cchhhhHHHHHHHHHHHHhcCcc---E-EEEEeecccccCcchhhhh
Q 042386 407 SHVKLRIKSFRV---PELFIELPE---------TATVGSLKRRVMEAVNAILGGGL---R-VGVLLQGKKVKDDNKTLLQ 470 (699)
Q Consensus 407 ~~VKl~IKSf~v---PEL~IeiPE---------tATVgSLKrtVmeavtailgggl---r-VgvllqGKkV~dD~kTL~q 470 (699)
..++|.||...- +..-|+||. ++||+.||..|.+.. .+|+ + .-+++.||.. +|++||..
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~----~~gip~~~~qrLi~~Gk~L-~D~~tL~~ 85 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKL----QESVPDPELIDLIYCGRKL-KDDQTLDF 85 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHC----TTTCCCSSSEEEEETTEEC-CTTCBHHH
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHh----ccCCChhhcEEEEECCeEC-CCCCcHHH
Confidence 348899998877 677899877 599999999998753 2243 2 5568899888 56799999
Q ss_pred hcccCCCC
Q 042386 471 TGISHDNQ 478 (699)
Q Consensus 471 ~GIs~~~~ 478 (699)
.||..+..
T Consensus 86 y~i~~g~~ 93 (107)
T 1x1m_A 86 YGIQPGST 93 (107)
T ss_dssp HTCCTTCE
T ss_pred cCCCCCCE
Confidence 99976644
No 73
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.82 E-value=0.011 Score=48.93 Aligned_cols=68 Identities=18% Similarity=0.301 Sum_probs=50.2
Q ss_pred ceeEEEEceeec-CeeeEE-cCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCC
Q 042386 407 SHVKLRIKSFRV-PELFIE-LPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 407 ~~VKl~IKSf~v-PEL~Ie-iPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
..+++.||+..= -.+.|| |+.++||+.||..|.+.. .|--. +.-+++.||.. +|++||.+.||..+..
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~-gip~~--~qrL~~~gk~L-~d~~tL~~~~i~~g~~ 75 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALF-DVRPE--CQRLFYRGKQL-ENGYTLFDYDVGLNDI 75 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHS-CCCTT--TEEEEETTEEC-CSSSBHHHHTCCTTCE
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHH-CcChh--hEEEEECCeEC-CCCCCHHHCCCCCCCE
Confidence 348888887654 357795 999999999999998764 22222 34467788877 5779999999977643
No 74
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.82 E-value=0.014 Score=49.43 Aligned_cols=64 Identities=20% Similarity=0.162 Sum_probs=49.3
Q ss_pred eeEEEEceeecC--eeeEEcCCcchhhhHHHHHHHHHHHHhcCcc---EEEEEeecccccCcchhhhhh--cccCC
Q 042386 408 HVKLRIKSFRVP--ELFIELPETATVGSLKRRVMEAVNAILGGGL---RVGVLLQGKKVKDDNKTLLQT--GISHD 476 (699)
Q Consensus 408 ~VKl~IKSf~vP--EL~IeiPEtATVgSLKrtVmeavtailgggl---rVgvllqGKkV~dD~kTL~q~--GIs~~ 476 (699)
.+++.||+..=. .+.|+|+.++||+.||..|.+.. .+|+ +..++..||... |++||.+. ||..+
T Consensus 7 ~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~----~~~i~~~~QrLi~~Gk~L~-D~~tL~~~~~~i~~~ 77 (93)
T 1wgd_A 7 GVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVY----PERPRPEDQRLIYSGKLLL-DHQCLRDLLPKQEKR 77 (93)
T ss_dssp CCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHS----TTCCCTTTCEEEETTEECC-SSSCHHHHSCSSSCS
T ss_pred EEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHh----cCCCChHHeEEEECCEECc-CcCCHHHHhcCCCCC
Confidence 488999988777 68888999999999999998763 2233 344677888775 55899999 88644
No 75
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.78 E-value=0.0054 Score=52.51 Aligned_cols=67 Identities=18% Similarity=0.271 Sum_probs=47.7
Q ss_pred eeEEEEceee--cCeeeE-EcCCcchhhhHHHHHHHHHHHHhcCccEEEEEee--cccccCcchhhhhhcccCCC
Q 042386 408 HVKLRIKSFR--VPELFI-ELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQ--GKKVKDDNKTLLQTGISHDN 477 (699)
Q Consensus 408 ~VKl~IKSf~--vPEL~I-eiPEtATVgSLKrtVmeavtailggglrVgvllq--GKkV~dD~kTL~q~GIs~~~ 477 (699)
.+++.||+.+ -+...| ||+.++||+.||..|.++-..|--- |-.+.+. ||-. +|++||...||..+.
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~--~QrL~~~~~Gk~L-~D~~tL~~y~i~~~s 81 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPA--RQSLRLDPKGKSL-KDEDVLQKLPVGTTA 81 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTT--TCCEESSTTSCCC-CTTCBTTTSSCCSEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChH--HeEEEecCCCcCc-CCCCCHHHcCCCCCC
Confidence 4888899883 444568 9999999999999999864222111 3444544 6654 788999999987543
No 76
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=95.75 E-value=0.017 Score=48.03 Aligned_cols=65 Identities=15% Similarity=0.266 Sum_probs=49.7
Q ss_pred ceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCC
Q 042386 407 SHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHD 476 (699)
Q Consensus 407 ~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~ 476 (699)
..+++.||...=-++.|+|..+.||+.||..|.+.. .|--.- .-++..||.. +|++||...|| .+
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gip~~~--qrLi~~Gk~L-~d~~tL~~~~i-~g 68 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASV-SIPSEK--QRLIYQGRVL-QDDKKLQEYNV-GG 68 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHH-TCCGGG--EEEEETTEEC-CTTSBGGGGTC-TT
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHh-CCCHHH--EEEEECCeEC-CCCCCHHHcCC-CC
Confidence 368888988766667899999999999999998764 332233 3457788777 56899999999 53
No 77
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.75 E-value=0.0067 Score=52.90 Aligned_cols=69 Identities=22% Similarity=0.256 Sum_probs=51.0
Q ss_pred ceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 407 SHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 407 ~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
.++++.||++.==.+.|+|+.++||+.||..|.+.. .|--. +..+++.||.+ +|++||...||..+..|
T Consensus 22 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~--~qrLi~~Gk~L-~D~~tL~~ygI~~g~ti 90 (106)
T 1ttn_A 22 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAE-GVEPG--SQRWFFSGRPL-TDKMKFEELKIPKDYVV 90 (106)
T ss_dssp CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTT-CCCST--TCEEEETTEEC-CTTSHHHHCCCSSSCEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHH-CcCcc--cEEEEECCEEC-CCCCcHHHcCCCCCCEE
Confidence 458888887644456799999999999999998753 22222 34467788876 57899999999765533
No 78
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=95.65 E-value=0.014 Score=47.19 Aligned_cols=65 Identities=17% Similarity=0.386 Sum_probs=48.0
Q ss_pred eEEEEceeecCee-eEE-cCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCC
Q 042386 409 VKLRIKSFRVPEL-FIE-LPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDN 477 (699)
Q Consensus 409 VKl~IKSf~vPEL-~Ie-iPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~ 477 (699)
+++.||+..=-++ .|| |+.++||+.||..+.+.. .|--. +..+++.||.. +|++||.+.||..+.
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~-gip~~--~qrL~~~g~~L-~d~~tL~~~~i~~g~ 69 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELF-HVEPG--LQRLFYRGKQM-EDGHTLFDYEVRLND 69 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHH-CCCGG--GEEEEETTEEC-CTTCBTTTTTCCTTC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHH-CcChh--hEEEEECCEEC-CCCCCHHHcCCCCCC
Confidence 5677776554454 689 999999999999998764 23222 34467788776 577999999997654
No 79
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=95.64 E-value=0.011 Score=49.66 Aligned_cols=66 Identities=21% Similarity=0.403 Sum_probs=50.6
Q ss_pred eEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCC
Q 042386 409 VKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 409 VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
+++.||++.=-...|||+.++||+.||..+.+.. .|--. +.-+++.||.. +|++||...||..+..
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~-gip~~--~qrL~~~Gk~L-~D~~tL~~~gi~~g~~ 75 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKE-GIPPD--QQRLIFAGKQL-EDGRTLSDYNIQKEST 75 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHH-CCCGG--GCEEEETTEEC-CTTSBSGGGTCCTTCE
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHH-CcChh--hEEEEECCEEC-CCCCcHHHcCCCCCCE
Confidence 6777888777778899999999999999998865 23222 33457788877 4679999999976643
No 80
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=95.57 E-value=0.011 Score=49.61 Aligned_cols=64 Identities=25% Similarity=0.329 Sum_probs=48.0
Q ss_pred EEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCC
Q 042386 410 KLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDN 477 (699)
Q Consensus 410 Kl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~ 477 (699)
++.||++.=-.+.|+|+.++||+.||..+.+.. .|--.-. -++..||.. +|++||...||..+.
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~q--rLi~~Gk~L-~D~~tL~~~~i~~g~ 65 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKE-GIPPQQQ--RLIYSGKQM-NDEKTAADYKILGGS 65 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGC--EEEETTEEC-CTTSBTTTTTCCTTC
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHH-CcChhHE--EEEECCeEC-CCCCcHHHcCCCCCC
Confidence 567777766667899999999999999997764 3332333 356788776 568999999997654
No 81
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=95.51 E-value=0.0082 Score=52.72 Aligned_cols=67 Identities=21% Similarity=0.130 Sum_probs=50.4
Q ss_pred ceeEEEEceeecC--eeeEEcCCcchhhhHHHHHHHHHHHHhc-CccEEEEEeecccccCcchhhhhh--cccCC
Q 042386 407 SHVKLRIKSFRVP--ELFIELPETATVGSLKRRVMEAVNAILG-GGLRVGVLLQGKKVKDDNKTLLQT--GISHD 476 (699)
Q Consensus 407 ~~VKl~IKSf~vP--EL~IeiPEtATVgSLKrtVmeavtailg-gglrVgvllqGKkV~dD~kTL~q~--GIs~~ 476 (699)
..+++.||+..-. ++.|||+.++||+.||..|.+..+.+.- .-.| ++..||... |++||.+. ||..+
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~Qr--LIy~Gk~L~-D~~tL~~y~~~I~~~ 93 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQR--LVYSGRLLP-DHLQLKDILRKQDEY 93 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCC--EEETTEEEC-TTSBTHHHHTTTCSE
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEE--EEECCEECC-CCCCHHHHhcCCCCC
Confidence 4599999986655 7889999999999999999886532221 3334 577888776 67999999 88643
No 82
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=95.49 E-value=0.0037 Score=53.01 Aligned_cols=56 Identities=16% Similarity=0.306 Sum_probs=42.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC----C-----CchHHHhhhcc-CCCCCCCchhhhhhhhhchhccc
Q 042386 598 RIRRPFSVAEVEALVQAVEKLG----T-----GRWRDVKLRAF-DNAKHRTYVDLKDKWKTLVHTAR 654 (699)
Q Consensus 598 R~rr~WT~eEveaLv~GVekyG----~-----GkW~~Il~~~~-~~f~~RT~VDLKDKWRNL~K~a~ 654 (699)
++...||.+|+.+|++.....- . ..|..|-..-. ..| +||....++||+||.+.-.
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~-~rs~~qC~~K~~nL~k~Yk 67 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGF-DRSPDMCTDKWRNLLKEFK 67 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHH
Confidence 3567899999999999997532 2 26988875321 123 6999999999999998643
No 83
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=95.40 E-value=0.011 Score=59.73 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=46.7
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhccc
Q 042386 595 VQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTAR 654 (699)
Q Consensus 595 ~~RR~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a~ 654 (699)
...+...+||++|.+.+++|+.+||. +|..|-.. ...||..+.|.-|.+..|.-.
T Consensus 128 ~~~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~----VgTKT~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 128 VIQKCNARWTTEEQLLAVQAIRKYGR-DFQAISDV----IGNKSVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHH----HSSCCHHHHHHHHHHTTTTTT
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHH----cCCCCHHHHHHHHHHHHHHhh
Confidence 34567889999999999999999998 89999763 467999999999988776443
No 84
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.36 E-value=0.026 Score=45.98 Aligned_cols=52 Identities=13% Similarity=0.204 Sum_probs=42.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhc
Q 042386 597 RRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHT 652 (699)
Q Consensus 597 RR~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~ 652 (699)
+-....||++|.+...+|+.+||. +|..|... .+..||..|+..-|-.-.|.
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~---~v~~Kt~~~~v~fYY~wKkt 57 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKE---LLPNKETGELITFYYYWKKT 57 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHH---SCTTSCHHHHHHHHHHHHCS
T ss_pred CcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHH---HcCCCcHHHHHHHHhcccCC
Confidence 445679999999999999999999 89999863 24789999998776654443
No 85
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=95.29 E-value=0.0092 Score=52.40 Aligned_cols=67 Identities=21% Similarity=0.342 Sum_probs=49.3
Q ss_pred ceeEEEEceeecCee--eEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcc-cCC
Q 042386 407 SHVKLRIKSFRVPEL--FIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGI-SHD 476 (699)
Q Consensus 407 ~~VKl~IKSf~vPEL--~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GI-s~~ 476 (699)
..+++.||+++=+.. -|||+.++||+.||..|.+..+.|--. +.-+++.||... |++||...|| ..+
T Consensus 18 ~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~--~QrLi~~Gk~L~-D~~tL~dy~I~~~g 87 (98)
T 4a20_A 18 AAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHIS--EIKLLLKGKVLH-DNLFLSDLKVTPAN 87 (98)
T ss_dssp CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGG--GEEEEETTEEEC-TTCBGGGSCCBTTB
T ss_pred CCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChh--hEEEEECCEECc-CcCCHHHcCcCCCC
Confidence 458999999987754 447889999999999995554322222 345788998775 6699999999 443
No 86
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=95.22 E-value=0.02 Score=50.50 Aligned_cols=66 Identities=20% Similarity=0.358 Sum_probs=50.2
Q ss_pred eeEEEEceeecCe----------eeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCC
Q 042386 408 HVKLRIKSFRVPE----------LFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDN 477 (699)
Q Consensus 408 ~VKl~IKSf~vPE----------L~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~ 477 (699)
.|.|.|++-..++ +.|||+.++||+.||..|.+.. .|--. +.-+++.||.. +|++||.+.||..+.
T Consensus 25 ~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~-gip~~--~QrL~~~Gk~L-~D~~tL~~y~i~~g~ 100 (115)
T 1we7_A 25 PVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEAT-GMPAG--KQKLQYEGIFI-KDSNSLAYYNMASGA 100 (115)
T ss_dssp CEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHS-SCCTT--TEEEEETTEEE-CTTSBHHHHTCCSSC
T ss_pred CEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHH-CCChH--HEEEEECCEEC-CCCCCHHHCCCCCCC
Confidence 5888888766553 6799999999999999998763 22222 45567788876 577999999997654
No 87
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=95.20 E-value=0.023 Score=50.70 Aligned_cols=66 Identities=17% Similarity=0.338 Sum_probs=47.4
Q ss_pred EEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 410 KLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 410 Kl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
++.||+..=-...|||+.++||+.||..+.+.. .|-- =+..+++.|+.. +|++||.+.||..+..+
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~-gip~--~~q~L~~~g~~L-~d~~tL~~~~i~~~~~l 67 (152)
T 3b08_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPP--DQQRLIFAGKQL-EDGRTLSDYNIQKESTL 67 (152)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHH-CCCG--GGEEEEETTEEC-CTTSBTGGGTCCTTCEE
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHH-CcCh--HHeEEEECCeEC-cCcccHHHhccCCCCee
Confidence 355555433355789999999999999998865 1211 145577888776 67899999999876543
No 88
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.16 E-value=0.038 Score=46.04 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=46.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchhccccC
Q 042386 597 RRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARIS 656 (699)
Q Consensus 597 RR~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a~i~ 656 (699)
|.....||++|.+.+.+|+.+||. +|..|... .+..||..|+..-|..-.|...+.
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~---~v~~Kt~~~~v~fYY~wKkt~~y~ 60 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGK-DFNDIRQD---FLPWKSLTSIIEYYYMWKTTDRYV 60 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHT---TCSSSCHHHHHHHHHHHHTCCSSC
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHH---HcCCCCHHHHHHHHHhhcCCchHH
Confidence 567789999999999999999999 89999863 257899999998877655555543
No 89
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.15 E-value=0.019 Score=48.86 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHHHHHhCC---CchHHHhhhccCCCCCCCchhhhhhhhhchhccccC
Q 042386 601 RPFSVAEVEALVQAVEKLGT---GRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARIS 656 (699)
Q Consensus 601 r~WT~eEveaLv~GVekyG~---GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a~i~ 656 (699)
..||.+|..+|.+|+..|+. ++|..|-.. +..||.-+.+.+|.-|.+...-.
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~----V~gKT~eE~~~hY~~l~~~~~s~ 63 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAAA----VGSRSPEECQRKYMENPRGKGSQ 63 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHH----TTTSCHHHHHHHHHHSSSSSCCC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHHHH----cCCCCHHHHHHHHHHHHhccccc
Confidence 47999999999999999986 789999763 35699999999999997654443
No 90
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.14 E-value=0.021 Score=50.79 Aligned_cols=49 Identities=20% Similarity=0.319 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCchHHHhhhcc-CCCCCCCchhhhhhhhhchh
Q 042386 602 PFSVAEVEALVQAVEKLGTGRWRDVKLRAF-DNAKHRTYVDLKDKWKTLVH 651 (699)
Q Consensus 602 ~WT~eEveaLv~GVekyG~GkW~~Il~~~~-~~f~~RT~VDLKDKWRNL~K 651 (699)
.||.||++.|.+-+++|+. +|--|...+. ..+..||-=|||++|-.+.+
T Consensus 32 ~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 32 AWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 7999999999999999988 9999998753 24568999999999977765
No 91
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=95.07 E-value=0.026 Score=48.47 Aligned_cols=71 Identities=17% Similarity=0.315 Sum_probs=55.4
Q ss_pred CceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCCC
Q 042386 406 DSHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQKD 480 (699)
Q Consensus 406 d~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ld 480 (699)
..++++.||+..=-++.|+|..+.||+.||..+.+.. .|--. ...+++.||.+. |++||...||..+..|+
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~-gip~~--~qrLif~Gk~L~-d~~tl~dy~i~~g~~I~ 89 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQ-GVPMN--SLRFLFEGQRIA-DNHTPKELGMEEEDVIE 89 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHH-TCCGG--GEEEEETTEECC-TTCCHHHHTCCTTCEEE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CCChh--hEEEEECCeEcC-CCCCHHHCCCCCCCEEE
Confidence 3468999998876778899999999999999998765 12112 356788999886 56999999998776543
No 92
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.02 E-value=0.0095 Score=52.15 Aligned_cols=66 Identities=21% Similarity=0.431 Sum_probs=48.8
Q ss_pred eEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCC
Q 042386 409 VKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 409 VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
+++.||.+.=-.+.|+|+.+.||+.||..|.+.. .|--. +.-+++.||... |++||...||..+..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~--~QrLi~~Gk~L~-D~~tL~~~~i~~g~~ 67 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSI-SCEES--QIKLIYSGKVLQ-DSKTVSECGLKDGDQ 67 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTT-TSCGG--GCEEEETTEECC-TTSBTTTTTCCTTCE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CCChh--hEEEEECCEECC-CcCCHHHcCCCCCCE
Confidence 3567777666667899999999999999998754 22222 334678898775 579999999987653
No 93
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=95.01 E-value=0.015 Score=59.71 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchHHHhhhccC
Q 042386 601 RPFSVAEVEALVQAVEKLGTGRWRDVKLRAFD 632 (699)
Q Consensus 601 r~WT~eEveaLv~GVekyG~GkW~~Il~~~~~ 632 (699)
..|+.+|-..|+.||-+||.|+|..|+.++..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~Dp~L 200 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDDPFL 200 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHCTTT
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcCccc
Confidence 47999999999999999999999999998854
No 94
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=94.96 E-value=0.025 Score=52.56 Aligned_cols=69 Identities=19% Similarity=0.391 Sum_probs=52.4
Q ss_pred ceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 407 SHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 407 ~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
..+++.||.+.=-.+.|+|+.++||+.||..|-+.. .|--. +.-+++.||.. +|++||...||..+..|
T Consensus 19 ~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~-gip~~--~QrL~~~g~~L-~d~~tL~~~~i~~~~~l 87 (172)
T 3u30_A 19 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPD--QQRLIFAGKQL-EDGRTLSDYNIQKESTL 87 (172)
T ss_dssp CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHH-CCCGG--GEEEEETTEEC-CTTCBTGGGTCCTTCEE
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CcChH--HEEEEECCccc-cccCCHhHcCCccccee
Confidence 358899998876678899999999999999998754 22212 33467788665 67899999999876644
No 95
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=93.89 E-value=0.0046 Score=49.64 Aligned_cols=65 Identities=14% Similarity=0.202 Sum_probs=46.4
Q ss_pred EEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 411 LRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 411 l~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
+.||...=-++.|||+.++||+.||..+.+.. .|--.-. -+++.||.. +|++||.+.||..+..+
T Consensus 3 i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gi~~~~q--rL~~~gk~L-~d~~tL~~~~i~~g~~i 67 (76)
T 3b1l_X 3 VFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQ-GVPADQL--RVIFAGKEL-PNHLTVQNCDLEQQSIV 67 (76)
Confidence 45555544456789999999999999998754 3332333 346778766 56799999999877644
No 96
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=94.87 E-value=0.046 Score=45.26 Aligned_cols=64 Identities=16% Similarity=0.293 Sum_probs=48.7
Q ss_pred CceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcc
Q 042386 406 DSHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGI 473 (699)
Q Consensus 406 d~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GI 473 (699)
...+++.||...=-...|+|+.++||+.||..|.+.. .|--. +.-++..||.. +|++||...||
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gip~~--~qrLi~~Gk~L-~D~~tL~~~~i 78 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASV-SIPSE--KQRLIYQGRVL-QDDKKLQEYNV 78 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHH-TCCGG--GEEEEETTEEC-CTTSBGGGGTC
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHh-CCCHH--HEEEEECCEEC-CCCCcHHHcCC
Confidence 3458889998766677889999999999999997764 33222 23456788766 45899999999
No 97
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=94.67 E-value=0.035 Score=49.32 Aligned_cols=67 Identities=16% Similarity=0.331 Sum_probs=51.6
Q ss_pred eEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 409 VKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 409 VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
.++.||.+.=-...|||+.++||+.||..|.+.. .|--. +.-+++.||.. +|++||.+.||..+..|
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~-gip~~--~qrLi~~Gk~L-~D~~tL~~ygI~~gstI 76 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKE-GIPPD--QQRLIWAGKQL-EDGRTLSDYNIQRESTL 76 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHH-CCCGG--GEEEEETTEEC-CTTCBTTTTTCCSSCEE
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHH-CcChH--HEEEEECCEEC-CCCCcHHHCCCCCCCEE
Confidence 6788888887788899999999999999998764 22222 34457788876 57899999999866543
No 98
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=94.64 E-value=0.016 Score=49.16 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=46.1
Q ss_pred eeEEEEceeecCeeeE-EcCCcchhhhHHHHHHHHHHHHhcCccEEEEE---eecccccCcchhhhhhcccCCCCC
Q 042386 408 HVKLRIKSFRVPELFI-ELPETATVGSLKRRVMEAVNAILGGGLRVGVL---LQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 408 ~VKl~IKSf~vPEL~I-eiPEtATVgSLKrtVmeavtailggglrVgvl---lqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
.++|.||. +=-.+-| ||+.++||+.||..|.+.. .|--.-.| ++ ..||.. +|++||...||..+..|
T Consensus 7 ~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~-gip~~~Qk--Li~~k~~Gk~L-~D~~~L~~~~i~~g~~l 77 (90)
T 1v5t_A 7 GLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLT-GVLPERQK--LLGLKVKGKPA-ENDVKLGALKLKPNTKI 77 (90)
T ss_dssp SCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHT-CCCTTTCE--EESCEETTEEC-CTTSBHHHHTCCTTEEE
T ss_pred eEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHH-CcCHHHeE--EEeeccCCcCc-CCCCCHHHcCCCCCCEE
Confidence 35556652 2233448 9999999999999998874 34333344 34 678665 67799999999866543
No 99
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=94.48 E-value=0.012 Score=50.51 Aligned_cols=64 Identities=25% Similarity=0.384 Sum_probs=46.9
Q ss_pred eEEEEceeecCeeeEE--cCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccC
Q 042386 409 VKLRIKSFRVPELFIE--LPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISH 475 (699)
Q Consensus 409 VKl~IKSf~vPEL~Ie--iPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~ 475 (699)
+++.||+++=...-|| ++.+.||+.||..|.++.+.|--.-. -++..||... |++||.+.||.+
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~Q--rLi~~Gk~L~-D~~tL~~y~I~~ 67 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEI--KLLLKGKVLH-DNLFLSDLKVTP 67 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTE--EEEETTEECC-TTCBHHHHCCCG
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHE--EEEECCEECc-CcCCHHHcCCCC
Confidence 4678888887766555 66999999999999555543333333 4677897774 668999999943
No 100
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=94.31 E-value=0.054 Score=48.66 Aligned_cols=63 Identities=19% Similarity=0.361 Sum_probs=51.6
Q ss_pred eeEEEEceeec--CeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEE---EEEeecccccCcchhhhhhcccCCC
Q 042386 408 HVKLRIKSFRV--PELFIELPETATVGSLKRRVMEAVNAILGGGLRV---GVLLQGKKVKDDNKTLLQTGISHDN 477 (699)
Q Consensus 408 ~VKl~IKSf~v--PEL~IeiPEtATVgSLKrtVmeavtailggglrV---gvllqGKkV~dD~kTL~q~GIs~~~ 477 (699)
.+++.||.+.- -.+-++|..++||+.||..|.|.- |+.+ . |+-|+++-+|++||...||.+++
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~------Gipp~~QR-li~ggkll~D~~TL~~ygI~~~G 91 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDY------GFPPVLQQ-WVIGQRLARDQETLHSHGVRQNG 91 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHH------CCCGGGEE-EEETTEEECTTCBTGGGTCCSTT
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHh------CCCHHHEE-EeccCeEccCcCcHHHcCCCCCC
Confidence 47777787763 588999999999999999999987 5432 3 66788899999999999997655
No 101
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.20 E-value=0.017 Score=50.26 Aligned_cols=65 Identities=22% Similarity=0.282 Sum_probs=47.5
Q ss_pred eeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCC
Q 042386 408 HVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDN 477 (699)
Q Consensus 408 ~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~ 477 (699)
.+++.||+ .=-.+.|+|+.++||+.||..|.+.. .|--.-.| ++..||.. +|++||...||..+.
T Consensus 28 ~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~Qr--Li~~Gk~L-~D~~tL~~~gI~~g~ 92 (101)
T 3m63_B 28 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKAN-GIPVANQR--LIYSGKIL-KDDQTVESYHIQDGH 92 (101)
T ss_dssp -CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHH-SCCSTTCC--EEETTEEC-CTTSBTTTTTCCTTE
T ss_pred EEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHH-CcChHHEE--EEECCEEC-CCcCcHHHCCCCCCC
Confidence 47888886 44456689999999999999998765 33333333 56788766 568999999997654
No 102
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=94.18 E-value=0.021 Score=50.12 Aligned_cols=67 Identities=18% Similarity=0.167 Sum_probs=48.5
Q ss_pred eEEEEceeecCeeeEEcC-CcchhhhHHHHHHHHHHHHhcCccEEEEEeecc-----------cc---cCcchhhhhhcc
Q 042386 409 VKLRIKSFRVPELFIELP-ETATVGSLKRRVMEAVNAILGGGLRVGVLLQGK-----------KV---KDDNKTLLQTGI 473 (699)
Q Consensus 409 VKl~IKSf~vPEL~IeiP-EtATVgSLKrtVmeavtailggglrVgvllqGK-----------kV---~dD~kTL~q~GI 473 (699)
.+++|||-.==+ .|||. +++||+.||..|.+.+ .|--.-.| +.+.|+ .+ -+|++||.+.||
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~-gip~~~Qr--L~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi 83 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQL-QIPIHNQT--LSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNL 83 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHS-CCCTTTCC--CBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHh-CcCcccCE--EEECCccccccCccccccccccCCCCCCHHHCCC
Confidence 788998865433 68999 9999999999998876 12112223 335666 34 689999999999
Q ss_pred cCCCCC
Q 042386 474 SHDNQK 479 (699)
Q Consensus 474 s~~~~l 479 (699)
.++..|
T Consensus 84 ~~G~~L 89 (107)
T 1wf9_A 84 AHGSMV 89 (107)
T ss_dssp CTTCEE
T ss_pred CCCCEE
Confidence 987643
No 103
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=94.17 E-value=0.034 Score=46.73 Aligned_cols=55 Identities=20% Similarity=0.373 Sum_probs=40.9
Q ss_pred eeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCC
Q 042386 420 ELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 420 EL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
...|||+.++||+.||..|.+.. .|--.-.| ++..||.. +|++||...||..+..
T Consensus 23 ~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qr--L~~~Gk~L-~D~~tL~~~gi~~g~~ 77 (85)
T 2kd0_A 23 SIPLSVSPDCTVKDLKSQLQPIT-NVLPRGQK--LIFKGKVL-VETSTLKQSDVGSGAK 77 (85)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHH-CCCTTTCE--EEETTEEC-CTTCBTTTTTCCTTEE
T ss_pred EEEEEECCCCcHHHHHHHHHHHH-CcChHHEE--EEECCeEC-CCcCCHHHCCCCCCCE
Confidence 34589999999999999998764 33333344 56788766 6789999999976543
No 104
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=94.06 E-value=0.068 Score=47.59 Aligned_cols=66 Identities=17% Similarity=0.378 Sum_probs=49.2
Q ss_pred eEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCC
Q 042386 409 VKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 409 VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
+++.||++.=-+..|+|+.++||+.||..+.+.. .|--. +.-+++.||.. +|++||...||..+..
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~-gi~~~--~qrL~~~g~~L-~d~~tL~~~~i~~~~~ 142 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPD--QQRLIFAGKQL-EDGRTLSDYNIQKEST 142 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHH-CCCGG--GEEEEETTEEC-CTTSBTGGGTCCTTCE
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHh-CcChh--hEEEEECCEEC-CCCCCHHHcCCCCCCE
Confidence 5667776655567889999999999999998764 12111 45567788876 5789999999987653
No 105
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.03 E-value=0.03 Score=53.78 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=43.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC--CCchHHHhhhccCCCCCCCchhhhhhhhhchhc
Q 042386 597 RRIRRPFSVAEVEALVQAVEKLG--TGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHT 652 (699)
Q Consensus 597 RR~rr~WT~eEveaLv~GVekyG--~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~ 652 (699)
|...+.||..|...|+.|+.+|| .++|..|..++ .+..+|.-+|++=.+.+...
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da--~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDA--ELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHT--TCTTSCHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHh--ccCCCCHHHHHHHHHHHHHH
Confidence 44677999999999999999999 68999999875 46789999999876666554
No 106
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=93.87 E-value=0.17 Score=53.82 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=56.4
Q ss_pred CceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHH--HHHhcCccEEEEEeecccccCcchhhhhhcccCCCCCCCcc
Q 042386 406 DSHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAV--NAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQKDVLG 483 (699)
Q Consensus 406 d~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeav--tailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ld~lg 483 (699)
|..+++.||...=-.+.|||..+.||+.||..|.+.. +.|-- =+.-++..||... |++||...||..+..|--|.
T Consensus 5 ~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~--~~QrLiy~GK~L~-D~~tL~dygI~~gstIv~lv 81 (368)
T 1oqy_A 5 SSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPV--AGQKLIYAGKILS-DDVPIRDYRIDEKNFVVVMV 81 (368)
T ss_dssp -CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCS--TEEEEESSSSEEC-SSSBTTTTCCCTTSCEEEEE
T ss_pred CceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCCh--hheEEEECCeecC-CcCCHHHcCCCCCCEEEEEE
Confidence 3457888888654556799999999999999998753 11111 2556788888775 67999999999887775555
Q ss_pred ccc
Q 042386 484 FSL 486 (699)
Q Consensus 484 f~L 486 (699)
-.+
T Consensus 82 ~k~ 84 (368)
T 1oqy_A 82 TKT 84 (368)
T ss_dssp ECC
T ss_pred ecC
Confidence 444
No 107
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=93.72 E-value=0.065 Score=48.88 Aligned_cols=68 Identities=18% Similarity=0.255 Sum_probs=50.9
Q ss_pred eEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEE-e-ecccccCcchhhhhhcccCCCCCC
Q 042386 409 VKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVL-L-QGKKVKDDNKTLLQTGISHDNQKD 480 (699)
Q Consensus 409 VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvl-l-qGKkV~dD~kTL~q~GIs~~~~ld 480 (699)
.++.||.+.=-.+.|||++++||+.||..|.+.. .|--.-.| ++ . .||.. +|++||...||..+..+.
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~-gip~~~Qr--L~~~~~g~~L-~d~~tL~~y~i~~~~~l~ 72 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKI-GVHAFQQR--LAVHPSGVAL-QDRVPLASQGLGPGSTVL 72 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHH-CCCGGGEE--EEEETTCCBC-CTTSCGGGGTCCTTCEEE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHh-CCCHHHEE--EEEcCCCCCC-CCCCCHHHcCCCCCCEEE
Confidence 5677888776778899999999999999998765 22222233 44 5 58766 889999999998776543
No 108
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.60 E-value=0.035 Score=47.89 Aligned_cols=66 Identities=17% Similarity=0.210 Sum_probs=47.5
Q ss_pred eeEEEEceeecCeee--EEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCCC
Q 042386 408 HVKLRIKSFRVPELF--IELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQKD 480 (699)
Q Consensus 408 ~VKl~IKSf~vPEL~--IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ld 480 (699)
.++|.||. + =+.| |||+.++||+.||..|-+.. .|--.-.| +++.||...|| ||...||..+..|-
T Consensus 7 ~m~i~Vk~-~-g~~~~~l~v~~~~TV~~lK~~I~~~t-gip~~~Qk--Li~~Gk~L~D~--tL~~~~I~~g~~i~ 74 (96)
T 1wgg_A 7 GYSVTVKW-G-KEKFEGVELNTDEPPMVFKAQLFALT-GVQPARQK--VMVKGGTLKDD--DWGNIKMKNGMTVL 74 (96)
T ss_dssp EEEEEEEE-T-TEEEEEEEEESSSCHHHHHHHHHHHT-CCCTTTSC--CEETTEECCSS--CCCSCCCCSSCEEE
T ss_pred EEEEEEEE-C-CEEEEEEEECCCCcHHHHHHHHHHHH-CcCHHHeE--EEECCcCCCCC--CHHHCCCCCCCEEE
Confidence 47777773 2 2333 89999999999999998874 34333334 46789887766 99999998766443
No 109
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=93.58 E-value=0.049 Score=47.72 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=47.5
Q ss_pred eeEEEEcee---ecCeeeEEcCC-cchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCC
Q 042386 408 HVKLRIKSF---RVPELFIELPE-TATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 408 ~VKl~IKSf---~vPEL~IeiPE-tATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
.+.+.||+. .=-.+.|+|+. ++||+.||..|.+.. .|--.-. -+++.|| +-+|++||...||..+..
T Consensus 27 ~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~-gip~~~Q--rL~~~Gk-~L~D~~tL~~y~I~~g~~ 97 (111)
T 1we6_A 27 PATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEI-QIPANKQ--KLSGKAG-FLKDNMSLAHYNVGAGEI 97 (111)
T ss_dssp CEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHT-TCCTTTS--EEECSSS-BCCTTSBTTTTTCSSSCE
T ss_pred cEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHH-CCCHHHe--EEEECCE-ECCCCCcHHHCCCCCCCE
Confidence 378888875 21245689998 999999999998764 2322233 3566776 456789999999986653
No 110
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=93.57 E-value=0.18 Score=44.09 Aligned_cols=69 Identities=17% Similarity=0.149 Sum_probs=49.9
Q ss_pred CceeEEEEceeecC---eeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecc---cc---cCcchhhhhhcccCC
Q 042386 406 DSHVKLRIKSFRVP---ELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGK---KV---KDDNKTLLQTGISHD 476 (699)
Q Consensus 406 d~~VKl~IKSf~vP---EL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGK---kV---~dD~kTL~q~GIs~~ 476 (699)
+..|+|.|++ ... ..-++|+.+.||+.||..+.+-+ .|--.--| +++.|| .+ .+|++||...||..+
T Consensus 12 ~~~v~l~It~-s~~~~~~~e~~v~~~~TV~~LK~kIe~~~-Gip~~~Qr--Li~~g~~g~~~~~L~~D~~tL~~Y~I~~g 87 (97)
T 2kj6_A 12 DDSVHLHITH-ANLKSFSADARFSPQMSVEAVKEKLWKKC-GTSVNSMA--LELYDDSGSKVAVLSDDSRPLGFFSPFDG 87 (97)
T ss_dssp CCCEEEEEEE-TTSSCCCEEEEECTTCCHHHHHHHHHHHH-CCCTTSEE--EEEECSSSCBCCCSSGGGSCHHHHCCCSC
T ss_pred CceEEEEEEE-CCCCceEEEEEeCCCChHHHHHHHHHHHH-CcCHHHeE--EEEecCCCcccceecCCcCCHHHCCCCCC
Confidence 4469999998 333 46689999999999999988755 33333334 466674 32 699999999999765
Q ss_pred CC
Q 042386 477 NQ 478 (699)
Q Consensus 477 ~~ 478 (699)
..
T Consensus 88 ~~ 89 (97)
T 2kj6_A 88 FR 89 (97)
T ss_dssp CE
T ss_pred CE
Confidence 43
No 111
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.34 E-value=0.11 Score=47.94 Aligned_cols=80 Identities=25% Similarity=0.344 Sum_probs=52.7
Q ss_pred CCceeEEEEc--eeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCCCCc
Q 042386 405 RDSHVKLRIK--SFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQKDVL 482 (699)
Q Consensus 405 ~d~~VKl~IK--Sf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ld~l 482 (699)
+|+.+.+.|| +=. -+.-|+|++++||+.||..+-+.. .|=-.=+| ++..||.+. |+.||.|.||-.+.-+.=-
T Consensus 12 ~~~~itvkv~l~~~~-~k~tv~v~~d~TV~dLKe~ls~~~-~iP~e~qr--LIy~GKiLK-D~eTL~~~gIk~g~TIhLv 86 (118)
T 2daf_A 12 EDSLATVKVVLIPVG-QEIVIPFKVDTILKYLKDHFSHLL-GIPHSVLQ--IRYSGKILK-NNETLVQHGVKPQEIVQVE 86 (118)
T ss_dssp CSSCEEEEEEETTTC-CEEEEEECSSSCSHHHHHHHHHHH-TCCTTTEE--EEETTEEEC-SSCCHHHHSCCSSCEEEEE
T ss_pred cCccEEEEEEEcCCC-cEEEEEeCCCCcHHHHHHHHHhhh-CCChHHEE--EEECCeEcC-CcchHHHcCCCCCCEEEEE
Confidence 4454444443 311 356788999999999999988765 33334444 788899775 6789999999876633333
Q ss_pred ccccccC
Q 042386 483 GFSLEPK 489 (699)
Q Consensus 483 gf~LEp~ 489 (699)
=|...|.
T Consensus 87 i~s~~p~ 93 (118)
T 2daf_A 87 IFSTNPD 93 (118)
T ss_dssp EEESCTT
T ss_pred EecCCCc
Confidence 3333333
No 112
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=93.23 E-value=0.016 Score=52.26 Aligned_cols=67 Identities=16% Similarity=0.353 Sum_probs=0.0
Q ss_pred EEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCCC
Q 042386 410 KLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQKD 480 (699)
Q Consensus 410 Kl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ld 480 (699)
++.||+..=-++.|+|+.++||+.||..|.+.. .|--.- .-+++.|+.. +|++||.+.||..+..+.
T Consensus 2 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~--QrLi~~Gk~L-~D~~tL~~~~I~~gsti~ 68 (128)
T 3u5e_m 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE-GIPPDQ--QRLIFAGKQL-EDGRTLSDYNIQKESTLH 68 (128)
T ss_dssp -----------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHh-CcChHH--EEEEECCEEC-CCCCchhhhccCCCCEEE
Confidence 345666554456789999999999999998763 222222 2345677665 678999999997766443
No 113
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=92.91 E-value=0.15 Score=45.46 Aligned_cols=66 Identities=11% Similarity=0.032 Sum_probs=48.5
Q ss_pred eeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCC
Q 042386 408 HVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDN 477 (699)
Q Consensus 408 ~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~ 477 (699)
-+++.||...==..-|||..++||+.||..|-+.. .|-- =+..+...||.. +|.+||.+.||..+.
T Consensus 28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~-Gip~--~qQrLi~~Gk~L-~D~~TL~dygI~~gs 93 (100)
T 1uh6_A 28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQT-GTRW--NKIVLKKWYTIF-KDHVSLGDYEIHDGM 93 (100)
T ss_dssp EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHH-CCCG--GGCEEEETTEEC-CSSCBHHHHTCCTTE
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHh-CCCH--HHEEEEECCEEC-CCCCCHHHcCCCCCC
Confidence 38888887743445599999999999999998885 1211 134456778766 678999999997554
No 114
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=92.05 E-value=0.17 Score=47.94 Aligned_cols=66 Identities=17% Similarity=0.369 Sum_probs=47.8
Q ss_pred EEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 410 KLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 410 Kl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
++.||...=-.+.|+|+.++||+.||..|.+.. .|--. +.-+++.||.. +|++||.+-||..+..+
T Consensus 2 qI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~-gip~~--~QrLi~~Gk~L-~D~~tL~~y~I~~gstI 67 (169)
T 3l0w_B 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE-GIPPD--QQRLIFAGKQL-EDGRTLSDYNIQKESTL 67 (169)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHH-CCCTT--TEEEEETTEEC-CTTSBGGGGTCCTTCEE
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHH-CcCHH--HEEEEECCccc-cCcCcHHHcCCCCCCEE
Confidence 455666554556789999999999999998764 22222 33467788877 56899999999766543
No 115
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.00 E-value=0.26 Score=41.07 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=41.2
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhCCCc--hHHHhhhccCCCCCCCchhhh---hhhhhchh
Q 042386 596 QRRIRRPFSVAEVEALVQAVEKLGTGR--WRDVKLRAFDNAKHRTYVDLK---DKWKTLVH 651 (699)
Q Consensus 596 ~RR~rr~WT~eEveaLv~GVekyG~Gk--W~~Il~~~~~~f~~RT~VDLK---DKWRNL~K 651 (699)
.+|.|..||+|+-+.+++||+++|..+ |+.|++.- ...+.|.-++| .|||.-++
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M--~v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLM--NVDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHH--CCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHc--CCCCCCHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999543 88998742 23567877777 56665544
No 116
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=91.97 E-value=0.046 Score=45.82 Aligned_cols=66 Identities=18% Similarity=0.208 Sum_probs=41.3
Q ss_pred EEEceeecCeeeEE-cCCcchhhhHHHHHHHHHHHHhcCccEEEEEeeccccc--CcchhhhhhcccCCCC
Q 042386 411 LRIKSFRVPELFIE-LPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVK--DDNKTLLQTGISHDNQ 478 (699)
Q Consensus 411 l~IKSf~vPEL~Ie-iPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~--dD~kTL~q~GIs~~~~ 478 (699)
|+||+-.=-+ .|+ |+.++||+.||..|.+.. .|--.-.|+=+-..||.+. ||++||.+.||..+..
T Consensus 3 i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~-gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~ 71 (86)
T 2kzr_A 3 VRCKAKGGTH-LLQGLSSRTRLRELQGQIAAIT-GIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDM 71 (86)
T ss_dssp EEEEETTEEE-EECSCCTTCBHHHHHHHHHHHT-CCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCE
T ss_pred EEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHh-CCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCE
Confidence 4454433322 366 999999999999998864 2211223331111245553 5899999999987653
No 117
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=91.58 E-value=0.14 Score=46.92 Aligned_cols=69 Identities=12% Similarity=0.085 Sum_probs=49.1
Q ss_pred eeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHH-hcCc----cEEEEEeecccccCcchhhhhhcccCCC
Q 042386 408 HVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAI-LGGG----LRVGVLLQGKKVKDDNKTLLQTGISHDN 477 (699)
Q Consensus 408 ~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtai-lggg----lrVgvllqGKkV~dD~kTL~q~GIs~~~ 477 (699)
.+++.||.+.==..-|||++++||+.||..|.+.--.- .+|- =.+-++.+||.. +|++||.+.||..++
T Consensus 17 ~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~L-eD~~TL~~y~I~~~~ 90 (125)
T 2gow_A 17 MINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFL-HGNVTLGALKLPFGK 90 (125)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEE-ESSCBTGGGCCCTTS
T ss_pred eEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCC-CCCCcHHHcCCCCCC
Confidence 37788877655566789999999999999988721000 1111 256678899877 577999999997543
No 118
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=91.52 E-value=0.092 Score=54.90 Aligned_cols=54 Identities=26% Similarity=0.378 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CchHHHhhhc-------cCCC-CCCCchhhhhhhhhchhc
Q 042386 599 IRRPFSVAEVEALVQAVEKLGT---GRWRDVKLRA-------FDNA-KHRTYVDLKDKWKTLVHT 652 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~---GkW~~Il~~~-------~~~f-~~RT~VDLKDKWRNL~K~ 652 (699)
+.+.||++|-..|+-++.+||. |.|..|+..- |+.| ..||++.|..+=.+|++.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~ 275 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITL 275 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 4468999999999999999999 9999997321 3333 799999999999999874
No 119
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=91.35 E-value=0.17 Score=52.77 Aligned_cols=67 Identities=16% Similarity=0.371 Sum_probs=50.0
Q ss_pred eeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCC
Q 042386 408 HVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 408 ~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
.+++.||+..=-.+.|||+.++||+.||..|.+.. .|--. +.-+++.||.. +|++||.+.||..+..
T Consensus 233 ~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~-GIp~~--~QRLi~~Gk~L-~D~~TLsdygI~~gst 299 (307)
T 3ai5_A 233 SMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPD--QQRLIFAGKQL-EDGRTLSDYNIQKEST 299 (307)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH-CCCGG--GCEEEETTEEC-CTTSBTGGGTCCTTCE
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CcChH--HEEEEeCCeec-CCCCCHHHcCCCCCCE
Confidence 47888887644456799999999999999998764 22222 34467788876 5789999999976553
No 120
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=91.17 E-value=0.42 Score=43.75 Aligned_cols=74 Identities=26% Similarity=0.343 Sum_probs=50.0
Q ss_pred eEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCC----CCCCccc
Q 042386 409 VKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDN----QKDVLGF 484 (699)
Q Consensus 409 VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~----~ld~lgf 484 (699)
+.|+|+.-+ -..++||.++.||+.||..|-+.. .|--.-.| ++..|| +-+|++||...||.... +...|..
T Consensus 3 mfl~ir~~k-tti~lev~~sdTV~~lK~kI~~~e-gIP~~qQr--Li~~Gk-~LeD~~TLsdy~I~~~~a~~q~~stL~L 77 (118)
T 2fnj_B 3 VFLMIRRHK-TTIFTDAKESSTVFELKRIVEGIL-KRPPEEQR--LYKDDQ-LLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp EEEEEEEBT-EEEEEEEETTSBHHHHHHHHHHHH-CCCGGGEE--EEETTE-ECCTTSBHHHHTCCTTTSBTTBCEEEEE
T ss_pred EEEEEecCC-EEEEEEeCCcChHHHHHHHHHHHh-CCCHHHeE--EEECCe-ECCCCCCHHHcCcccccccCCCCCEEEE
Confidence 456666554 246889999999999999998764 22222223 345666 56899999999998421 3445666
Q ss_pred ccc
Q 042386 485 SLE 487 (699)
Q Consensus 485 ~LE 487 (699)
.|.
T Consensus 78 ~lr 80 (118)
T 2fnj_B 78 AFR 80 (118)
T ss_dssp EEB
T ss_pred Eec
Confidence 664
No 121
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=91.08 E-value=0.041 Score=51.85 Aligned_cols=67 Identities=16% Similarity=0.365 Sum_probs=0.0
Q ss_pred EEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCCC
Q 042386 410 KLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQKD 480 (699)
Q Consensus 410 Kl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ld 480 (699)
++.||+..=-++.|+|+.++||+.||..|.+.. .|--. +.-+++.|+.. +|+.||.+.||..+..|.
T Consensus 2 qI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~-gip~~--~QrLi~~Gk~L-~D~~tL~dygI~~gstL~ 68 (152)
T 3u5c_f 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE-GIPPD--QQRLIFAGKQL-EDGRTLSDYNIQKESTLH 68 (152)
T ss_dssp -----------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHh-CCCHH--HEEEEECCEEc-cccCcHHHcCCCCCCEEE
Confidence 345666544466789999999999999998754 22222 22356788776 567999999998765443
No 122
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=90.51 E-value=0.41 Score=43.42 Aligned_cols=68 Identities=12% Similarity=0.082 Sum_probs=48.2
Q ss_pred eeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHH-hcCc----cEEEEEeecccccCcchhhhhhcccCC
Q 042386 408 HVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAI-LGGG----LRVGVLLQGKKVKDDNKTLLQTGISHD 476 (699)
Q Consensus 408 ~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtai-lggg----lrVgvllqGKkV~dD~kTL~q~GIs~~ 476 (699)
.+.+.||.++==..-|||..+.||+.||..|-+.--.- .+|. =..-++.+||.. +|++||.+.+|..+
T Consensus 16 ~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~L-eD~~TL~~y~I~~~ 88 (116)
T 1wgh_A 16 MINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFL-HGNVTLGALKLPFG 88 (116)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEE-CSSCBTTTTTCCSS
T ss_pred eEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCC-CCCCcHHHcCCCCC
Confidence 37888887666667789999999999999988721000 1121 245578899866 67799999988643
No 123
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.32 E-value=0.22 Score=43.95 Aligned_cols=53 Identities=21% Similarity=0.254 Sum_probs=37.5
Q ss_pred eEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCC
Q 042386 422 FIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDN 477 (699)
Q Consensus 422 ~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~ 477 (699)
-|||+.++||+.||..|.+.. .|---=-|+ +.+.|.++ +|++||...||..+.
T Consensus 22 ~v~v~~~~TV~~LK~~I~~~t-gIpp~~QkL-i~~~~gkL-~D~~tLs~~~I~~gs 74 (100)
T 2dzm_A 22 DVVLEDTCTVGEIKQILENEL-QIPVSKMLL-KGWKTGDV-EDSTVLKSLHLPKNN 74 (100)
T ss_dssp EEEEETTSBHHHHHHHHHHHH-CCCTTTCCE-ECCSSSCC-CTTSBHHHHCCCSEE
T ss_pred EEEECCCCcHHHHHHHHHHHH-CCChhHeEE-EccCCCCC-CCcCCHHHcCCCCCC
Confidence 378999999999999998875 333233454 22234444 788999999997754
No 124
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=90.03 E-value=0.66 Score=40.26 Aligned_cols=70 Identities=14% Similarity=0.173 Sum_probs=50.8
Q ss_pred CCceeEEEEceeecC--eeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEee--ccc---ccCcchhhhhhcccCCC
Q 042386 405 RDSHVKLRIKSFRVP--ELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQ--GKK---VKDDNKTLLQTGISHDN 477 (699)
Q Consensus 405 ~d~~VKl~IKSf~vP--EL~IeiPEtATVgSLKrtVmeavtailggglrVgvllq--GKk---V~dD~kTL~q~GIs~~~ 477 (699)
.+..|+|.|++=.-. .+-++|+.+.||+.||..+.+-+ .|--.-.|+ ++. ||. +.+|++||..-||..+.
T Consensus 12 ~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~-GiP~~~QrL--~~~~~g~~~~~L~~D~~tL~~Y~i~~gs 88 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILT-GGCAGTMKV--QVFKGDTCVSTMDNNDAQLGYYANSDGL 88 (95)
T ss_dssp CCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHH-CSCTTTEEE--EEEETTEEEEECCCTTSBHHHHCCSSSC
T ss_pred CCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHH-CcCHHHeEE--EEecCCcccceeCCCCCCHhHCCcCCCC
Confidence 355699999984432 56689999999999999988754 344344454 333 563 46999999999997654
No 125
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=90.02 E-value=0.23 Score=42.39 Aligned_cols=68 Identities=15% Similarity=0.089 Sum_probs=48.8
Q ss_pred eeEEEEceeecC-eeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeec---cc---ccCcchhhhhhcccCCCC
Q 042386 408 HVKLRIKSFRVP-ELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQG---KK---VKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 408 ~VKl~IKSf~vP-EL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqG---Kk---V~dD~kTL~q~GIs~~~~ 478 (699)
.|+|.|++=.-+ -.-++|+.+.||+.||..+.+.. .|--.-.| +++.| |. +.+|++||...||..+..
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~-gip~~~qr--L~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~ 81 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVV-GSPASCME--LELYGADDKFYSKLDQEDALLGSYPVDDGCR 81 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHT-CSCTTTCB--CEEECSSSCEEEECCCSSSBTTSSSCCTTCE
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHH-CCCHHHeE--EEEeCCCCccccccCCCcCCHhHCCCCCCCE
Confidence 388989874443 35689999999999999998764 33333334 45555 44 368999999999976553
No 126
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=89.71 E-value=0.21 Score=55.16 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=41.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchh
Q 042386 598 RIRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVH 651 (699)
Q Consensus 598 R~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K 651 (699)
+..-+||.+|.+.+++||.+||. +|..|-.. ...||..+.|.-|-+..+
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~----VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDV----IGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHH----HSSCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHH----hCCCCHHHHHHHHHHHHH
Confidence 46679999999999999999998 99999864 367899999887765444
No 127
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=88.88 E-value=0.53 Score=43.26 Aligned_cols=63 Identities=24% Similarity=0.324 Sum_probs=42.6
Q ss_pred eeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCC----CCCCcccccc
Q 042386 421 LFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDN----QKDVLGFSLE 487 (699)
Q Consensus 421 L~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~----~ld~lgf~LE 487 (699)
.|+||-++.||+.||..|-+.. -|--. +-..+..| |+-+|++||...||.... --..|+..|.
T Consensus 14 I~ldve~sdTV~~lK~kI~~~~-giPp~--qQrLI~~G-k~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 14 IFTDAKESSTVFELKRIVEGIL-KRPPD--EQRLYKDD-QLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp EEEEEETTSBHHHHHHHHHHHH-CCCGG--GEEEEETT-EECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred EEEEcCCCChHHHHHHHHHHHH-CCCHH--HeEEEeCC-eECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 5789999999999999998764 11111 22344455 667999999999998711 1235566554
No 128
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=88.75 E-value=0.3 Score=47.61 Aligned_cols=67 Identities=16% Similarity=0.317 Sum_probs=50.0
Q ss_pred eEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 409 VKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 409 VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
.++.||...=-++.|||+.++||+.||..|.+.. .|--.-. -+++.||... |++||.+.||..+..|
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~-gIp~~~Q--rLi~~Gk~L~-D~~tL~dygI~~gstI 172 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQ--RLIFAGKQLE-DGRTLSDYNIQKESTL 172 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGC--CEEETTEECC-TTCBGGGGTCCTTCEE
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhcc-CCCHHHE--EEEECCEECC-CCCCHHHCCCCCCCEE
Confidence 7888888766677899999999999999998764 2221222 3567887765 5789999999766543
No 129
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=88.63 E-value=0.41 Score=43.55 Aligned_cols=67 Identities=18% Similarity=0.193 Sum_probs=48.9
Q ss_pred eEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 409 VKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 409 VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
.++.||+..=-...|||+.+.||+.||..|.+.. .|--.-. -++..||.. +|++||...||..+..|
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gip~~~q--~L~~~G~~L-~d~~tL~~y~i~~g~~l 148 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLE-GVQDDLF--WLTFEGKPL-EDQLPLGEYGLKPLSTV 148 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHH-TCCGGGE--EEEETTEEC-CTTSBGGGGTCCTTCEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHH-CCCHHHE--EEEECCeec-CCCCCHHHcCCCCCCEE
Confidence 6677776644567789999999999999998764 2322333 356788766 46799999999876543
No 130
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=87.83 E-value=0.95 Score=40.52 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=49.2
Q ss_pred eeEEEEceeecC-eeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeec---ccc---cCcchhhhhhcccCCCC
Q 042386 408 HVKLRIKSFRVP-ELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQG---KKV---KDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 408 ~VKl~IKSf~vP-EL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqG---KkV---~dD~kTL~q~GIs~~~~ 478 (699)
.|+|.|++=.-+ -+-|+||.+.||+.||..+.+.+ .|--. +-.+.+.| +.+ -+|++||...||..+..
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~-Gip~~--~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ 80 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVV-GTTVD--SMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYR 80 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHH-CCCTT--TEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEE
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHh-CCCHH--HeEEEEecCCCccccccCCCcCCHHHCCCCCCCE
Confidence 488999875554 35679999999999999998875 33222 34456666 543 58999999999966543
No 131
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=87.82 E-value=0.51 Score=43.67 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=51.1
Q ss_pred ceeEEEEceeecCee-eEEcCCcchhhhHHHHHHHHHHHHhcCc----cEEEEEeecccccCcchhhhhhcccCCC
Q 042386 407 SHVKLRIKSFRVPEL-FIELPETATVGSLKRRVMEAVNAILGGG----LRVGVLLQGKKVKDDNKTLLQTGISHDN 477 (699)
Q Consensus 407 ~~VKl~IKSf~vPEL-~IeiPEtATVgSLKrtVmeavtailggg----lrVgvllqGKkV~dD~kTL~q~GIs~~~ 477 (699)
-++++.||...--+. .++++.+.||..||..|.+.--.=-+|. =+.-++..||. -+|++||...+|..++
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~-LeD~~TLsdy~I~~~~ 89 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKV-LENSKTVKDYRSPVSN 89 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEE-CCTTSBGGGGSCCTTS
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeE-CcCCCcHHHcCCCcCC
Confidence 378999988888777 4999999999999999964210001121 14567888874 5788999999998664
No 132
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=87.66 E-value=0.53 Score=39.28 Aligned_cols=74 Identities=19% Similarity=0.331 Sum_probs=58.1
Q ss_pred CceeEEEEceeecC-eeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCCCCcc
Q 042386 406 DSHVKLRIKSFRVP-ELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQKDVLG 483 (699)
Q Consensus 406 d~~VKl~IKSf~vP-EL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ld~lg 483 (699)
..|+.|.+|+..=- |+++.|-.|.++.-|+.+.-|.. .|--. .+.+++.|+.|.+ +.|+.+.||-.++-+|..|
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~-gi~~~--~~rf~fdG~~l~~-~~Tp~~l~medgD~Idv~~ 79 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAM-GLSGH--KLSFFFDGTKLSG-KELPADLGLESGDLIEVWG 79 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHH-TCTTC--CCEEEETTEECCS-CCCHHHHTCCTTCEEEEEC
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHh-CCCcc--cEEEEECCEEcCC-CCCHHHcCCCCCCEEEEeC
Confidence 35799999998885 89999999999998888877765 12222 4668999999976 4799999998887776543
No 133
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=87.09 E-value=0.68 Score=37.46 Aligned_cols=49 Identities=20% Similarity=0.423 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCchHHHhhhccCCCCCCCchhhhhhhhhchh
Q 042386 600 RRPFSVAEVEALVQAVEKL--------GTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVH 651 (699)
Q Consensus 600 rr~WT~eEveaLv~GVeky--------G~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K 651 (699)
|.+||.||-.+|++=|.+| |.--|+.|-.. ....+|---.+|+|+.-++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~---~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKS---SLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHS---CSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHh---HCCCCCHHHHHHHHHHHcc
Confidence 6799999999999999999 55569988652 3579999999999987443
No 134
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=86.67 E-value=0.73 Score=39.92 Aligned_cols=70 Identities=11% Similarity=0.236 Sum_probs=55.5
Q ss_pred ceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCCC
Q 042386 407 SHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQKD 480 (699)
Q Consensus 407 ~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ld 480 (699)
.|++|.+|+..=-|++++|-.|.|+..|+.+.-|..- |--. .+.++..|+.|.+| .|+.+.+|-.++.+|
T Consensus 6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~g-i~~~--~~rf~FdG~~l~~~-~Tp~dl~medgD~Id 75 (94)
T 2io1_B 6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG-LSMR--QIRFRFDGQPINET-DTPAQLEMEDEDTID 75 (94)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT-CCGG--GEEEEETTEECCTT-CCTTTTTCCTTCEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhC-CCcc--cEEEEECCEEcCCC-CCHHHcCCCCCCEEE
Confidence 4799999998888999999999999988887777651 1112 36689999999765 899999988766544
No 135
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=86.54 E-value=0.66 Score=47.76 Aligned_cols=54 Identities=15% Similarity=0.264 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhC--CCchHHHhhhccCCCCCCCchhhhhhhhhchhccc
Q 042386 599 IRRPFSVAEVEALVQAVEKLG--TGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTAR 654 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG--~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a~ 654 (699)
+++.||..|+..|++++.+|| .++|..|..++ .+.++...+|+.-+..|+..+.
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA--~L~~ks~~~i~~~~~~li~~c~ 57 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELIADG--TLPVKSFEKYGETYDEMMEAAK 57 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTT--SSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhc--ccccCCHHHHHHHHHHHHHHHH
Confidence 457899999999999999999 58999999875 5788999999988887776553
No 136
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=86.40 E-value=0.6 Score=43.31 Aligned_cols=66 Identities=18% Similarity=0.393 Sum_probs=47.2
Q ss_pred eEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCC
Q 042386 409 VKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQ 478 (699)
Q Consensus 409 VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ 478 (699)
+.+.||.+.=-.+.++|+.+.||+.||..|.+.. .|--.-.| +++.|+.. +|++||...||..+..
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~-gip~~~q~--L~~~g~~L-~D~~tL~~y~i~~g~t 162 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQR--LIFAGKQL-EDGRTLSDYNIQKEST 162 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGCC--EEETTEEC-CTTSBSGGGTCCTTCE
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHh-CCCceeEE--EEECCccC-CCCCcHHHhCCCCCCE
Confidence 4556676665667889999999999999998774 22111222 46677766 5789999999976553
No 137
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=86.33 E-value=0.59 Score=41.58 Aligned_cols=56 Identities=18% Similarity=0.330 Sum_probs=43.3
Q ss_pred eeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 420 ELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 420 EL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
...|||+.++||+.||..|.+.. .|--.-.| ++..||.. +|.+||...||..+..+
T Consensus 31 ~~~lev~~~~TV~~lK~kI~~k~-gip~~qQr--LI~~GKiL-~D~~TL~~y~I~~gsti 86 (100)
T 1wju_A 31 KNLLETRLHITGRELRSKIAETF-GLQENYIK--IVINKKQL-QLGKTLEEQGVAHNVKA 86 (100)
T ss_dssp SEEEEEESSSBHHHHHHHHHHHT-TCCSTTCE--EEETTEEC-CTTSBHHHHTCCSSEEE
T ss_pred EEEEEeCCcCHHHHHHHHHHHHH-CcCHHHeE--EEeCCeEC-CCCCcHHHcCCCCCCEE
Confidence 46799999999999999998876 23333444 45678866 66799999999987765
No 138
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=86.12 E-value=0.66 Score=37.86 Aligned_cols=69 Identities=12% Similarity=0.225 Sum_probs=53.7
Q ss_pred eeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCCC
Q 042386 408 HVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQKD 480 (699)
Q Consensus 408 ~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ld 480 (699)
|++|.+|+..=-|+++.|-.|.++..|+...-|.. .|--.. +.++..|+.+.+| .|+.+.|+-.++-+|
T Consensus 1 ~i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~-gi~~~~--~rf~fdG~~l~~~-~Tp~~l~medgD~Id 69 (72)
T 1wm3_A 1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-GLSMRQ--IRFRFDGQPINET-DTPAQLEMEDEDTID 69 (72)
T ss_dssp CEEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHH-TCCTTT--CEEEETTEECCTT-CCTTTTTCCTTEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHh-CCCcce--EEEEECCEEcCCC-CCHHHcCCCCCCEEE
Confidence 68899999888899999999999998888877764 222233 4588899999765 799999887665544
No 139
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=86.05 E-value=0.51 Score=41.37 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=37.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhh
Q 042386 597 RRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKW 646 (699)
Q Consensus 597 RR~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKW 646 (699)
|.....||++|.+.+.+|+..||. +|..|.. .+..||..++-.=+
T Consensus 40 r~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~----~l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 40 RQVMNMWSEQEKETFREKFMQHPK-NFGLIAS----FLERKTVAECVLYY 84 (94)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHSTT-CHHHHHH----TCTTCCHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCC-CHHHHHH----HcCCCCHHHHHHHH
Confidence 346779999999999999999998 8999943 35889988876543
No 140
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=85.99 E-value=0.41 Score=51.43 Aligned_cols=54 Identities=24% Similarity=0.281 Sum_probs=46.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CchHHHhhhc-------cCC-CCCCCchhhhhhhhhchhcc
Q 042386 600 RRPFSVAEVEALVQAVEKLGT---GRWRDVKLRA-------FDN-AKHRTYVDLKDKWKTLVHTA 653 (699)
Q Consensus 600 rr~WT~eEveaLv~GVekyG~---GkW~~Il~~~-------~~~-f~~RT~VDLKDKWRNL~K~a 653 (699)
.+.||++|-..|+-++-+||. |+|..|+..- |+- |..||.++|..+=.+|++..
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~I 292 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCL 292 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 458999999999999999999 9999997542 333 38999999999999998863
No 141
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=85.95 E-value=0.68 Score=39.48 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=47.8
Q ss_pred CceeEEEEcee---ecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecc----c---ccCcchhhhhhcccC
Q 042386 406 DSHVKLRIKSF---RVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGK----K---VKDDNKTLLQTGISH 475 (699)
Q Consensus 406 d~~VKl~IKSf---~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGK----k---V~dD~kTL~q~GIs~ 475 (699)
+..|+|.|++- .--.+-+.+|.+.||+.||..+...+ .|=-.-.|+ .+.+. . .-||++||..-||..
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~-gip~~~q~L--~~~~~~~~~~~~~L~~d~~~L~~y~i~~ 83 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLL-KVPVSELLL--SYESSKMPGREIELENDLQPLQFYSVEN 83 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTT-TCCTTTCEE--EEECTTSCSCEEECCCSSSBSGGGTCCT
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHH-CCChhHeEE--EEEcCCCCceeeccCCCcccHhhcCCCC
Confidence 34589988752 32245578999999999999877654 343344554 34421 1 359999999999976
Q ss_pred CCCC
Q 042386 476 DNQK 479 (699)
Q Consensus 476 ~~~l 479 (699)
+..+
T Consensus 84 G~~I 87 (97)
T 1wjn_A 84 GDCL 87 (97)
T ss_dssp TCEE
T ss_pred CCEE
Confidence 6543
No 142
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=85.17 E-value=0.62 Score=41.23 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=48.0
Q ss_pred eeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEE--EEeecccccCcchhhhhhcccCCCCC
Q 042386 408 HVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVG--VLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 408 ~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVg--vllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
-..+-||...==..-|+|-.+.|||.||..|-|.. |+.+. .|.-|-++=+|..||..-||..+..|
T Consensus 21 mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~------Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstL 88 (93)
T 3plu_A 21 MIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQI------GTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNL 88 (93)
T ss_dssp EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHH------TCCGGGEEEEETTEECCTTSBTGGGTCCTTCEE
T ss_pred eEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHh------CCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEE
Confidence 36667776655666789999999999999987775 54331 23334455677899999999876544
No 143
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=83.66 E-value=0.37 Score=41.40 Aligned_cols=44 Identities=27% Similarity=0.427 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---chHHHhhhccCCCCCCCchhhhhhhh
Q 042386 600 RRPFSVAEVEALVQAVEKLGTG---RWRDVKLRAFDNAKHRTYVDLKDKWK 647 (699)
Q Consensus 600 rr~WT~eEveaLv~GVekyG~G---kW~~Il~~~~~~f~~RT~VDLKDKWR 647 (699)
-..||.+|-.+|..++.+|+.+ +|..|-. .+..||.-+++..+.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~----~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQ----YVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGG----GSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH----HcCCCCHHHHHHHHH
Confidence 4589999999999999999986 8999976 245799999887654
No 144
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=82.47 E-value=1 Score=38.33 Aligned_cols=66 Identities=21% Similarity=0.211 Sum_probs=44.5
Q ss_pred eeEEEEc----eeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEE-----eecccccCcchhhhhhcccCCC
Q 042386 408 HVKLRIK----SFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVL-----LQGKKVKDDNKTLLQTGISHDN 477 (699)
Q Consensus 408 ~VKl~IK----Sf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvl-----lqGKkV~dD~kTL~q~GIs~~~ 477 (699)
.|++.|- ++++.| +-||.+.||+.||..+.+-+ -|--.-.|.=+. +.| ++-+|++||..-||..+.
T Consensus 2 ~V~v~iths~~~~~~~E--~r~~~s~TI~~lK~ki~~~~-Gip~~~QrLi~~~~~~~~~g-~~l~d~~tL~~Y~i~~g~ 76 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPE--KRYGLAQTIESIKENVFTHF-ATPPEYMQLQLIDDRGITIE-KNMANDKQLGYYQCRDEF 76 (86)
T ss_dssp EEEEEEEETTCSCCEEE--EEEETTSBHHHHHHHHHTTS-CCCGGGEEEEEECTTSCEEE-SSCCTTSBGGGGTCCTTC
T ss_pred EEEEEEEEcCCCCeEEE--EEcCccCcHHHHHHHHHHHH-CCCHHHEEEEEecCCCCcee-eEcCCCCCHHHCCCCCCC
Confidence 4677665 577777 56799999999999987643 222233443211 134 467889999999997543
No 145
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=81.35 E-value=1.6 Score=39.20 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=55.7
Q ss_pred CCceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 405 RDSHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 405 ~d~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
...++.|.+|+..=-|+++.|-.|.++.-|+.+.-|.. .|--. .+.+++.|+.|.+| .|+.+.+|--++-+
T Consensus 23 ~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~-gi~~~--~~rfiFdG~~L~~~-~Tp~dl~mEDgD~I 93 (110)
T 2k8h_A 23 ETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQ-GISRN--SVRFLFDGTPIDET-KTPEELGMEDDDVI 93 (110)
T ss_dssp CCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHH-TCCSS--SCEEESSSCBCCSS-SHHHHHHCSSEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHh-CCCcc--cEEEEECCEEcCCC-CCHHHcCCCCCCEE
Confidence 34579999999877899999999999998888777764 22222 45689999999875 89999998766544
No 146
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=81.21 E-value=0.27 Score=41.46 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=36.8
Q ss_pred EEcCCcchhhhHHHHHHHHHHHHhcCc--cEEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 423 IELPETATVGSLKRRVMEAVNAILGGG--LRVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 423 IeiPEtATVgSLKrtVmeavtailggg--lrVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
|||+.++||+.|+..|.+..- |-..+ |.+|.=-.|--.-+++.||.+.||.|++.|
T Consensus 18 i~v~~~~t~~~L~~~I~~~~~-i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l 75 (80)
T 2pjh_A 18 ITATKRETAATFLKKVAKEFG-FQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLL 75 (80)
T ss_dssp CCCCSSCCHHHHHHHHHHHTC-CCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCE
T ss_pred EEcCCcChHHHHHHHHHHHcC-CCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEE
Confidence 578999999999999999862 33233 222222111111347889999999998754
No 147
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=80.47 E-value=1.9 Score=37.18 Aligned_cols=71 Identities=11% Similarity=0.245 Sum_probs=55.6
Q ss_pred CceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCCC
Q 042386 406 DSHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQKD 480 (699)
Q Consensus 406 d~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ld 480 (699)
+-|+.|.+|+..=-|+++.|-.|.++.-|+.+.-+..- |--. .+-+++.|+.|.+ +.|+.+.||-.++-+|
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~g-i~~~--~~rf~fdG~~l~~-~~Tp~dl~medgD~Id 85 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG-LSMR--QIRFRFDGQPINE-TDTPAQLEMEDEDTID 85 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHT-CCGG--GEEEEETTEECCT-TCCTTTTTCCTTEEEE
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhC-CCcc--ceEEEECCEEcCC-CCCHHHcCCCCCCEEE
Confidence 35899999998888999999999999988888777652 1112 4668999999975 5899999987665443
No 148
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=80.19 E-value=0.77 Score=47.78 Aligned_cols=71 Identities=18% Similarity=0.266 Sum_probs=45.1
Q ss_pred eeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEE---eecccccCcchhhhhhcccCCCCCCCcc
Q 042386 408 HVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVL---LQGKKVKDDNKTLLQTGISHDNQKDVLG 483 (699)
Q Consensus 408 ~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvl---lqGKkV~dD~kTL~q~GIs~~~~ld~lg 483 (699)
.++|.||. .==+.-|||+.++||+.||..+.+.. .|--.--| ++ ..|| +-+|+.||...||..+..+-=+|
T Consensus 5 ~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~t-gVpp~~Qk--Li~~k~~Gk-~l~D~~~L~~~~ik~g~~l~L~g 78 (320)
T 3shq_A 5 EVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKT-QVRPERQK--LLNLKYKGK-TAADNVKISALELKPNFKLMMVG 78 (320)
T ss_dssp EEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHH-CCCGGGCE--ETTCBSSSS-BCCTTSBTTSSCCC--CEEEEEC
T ss_pred eEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHH-CcCHHHeE--EeecccCCc-ccCccccHHHcCCCCCCEEEEEc
Confidence 46666663 33345589999999999999998765 22221122 22 3564 55678999999998776554333
No 149
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=79.65 E-value=1.5 Score=37.85 Aligned_cols=70 Identities=11% Similarity=0.237 Sum_probs=54.5
Q ss_pred ceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCCC
Q 042386 407 SHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQKD 480 (699)
Q Consensus 407 ~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ld 480 (699)
.+++|.+|+..=-|+++.|-.|.++..|+.+.-|.. .|--. .+.+++.|+.|.+| .|+.+.||-.++-+|
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~-gi~~~--~~rf~FdG~~l~~~-~Tp~dl~medgD~Id 73 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-GLSMR--QIRFRFDGQPINET-DTPAQLEMEDEDTID 73 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHT-TCCST--TEEEEETTEECCTT-CCTTTTTCCTTEEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHh-CCCcc--cEEEEECCEEcCCC-CCHHHcCCCCCCEEE
Confidence 368999999888899999999999988887776653 11112 36688999999765 899999988666544
No 150
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=78.70 E-value=1.2 Score=37.25 Aligned_cols=47 Identities=26% Similarity=0.361 Sum_probs=35.5
Q ss_pred cCeeeEEcCCcchhhhHHHHHHHHHHH----Hhc--CccE--EEEEeecccccCc
Q 042386 418 VPELFIELPETATVGSLKRRVMEAVNA----ILG--GGLR--VGVLLQGKKVKDD 464 (699)
Q Consensus 418 vPEL~IeiPEtATVgSLKrtVmeavta----ilg--gglr--VgvllqGKkV~dD 464 (699)
..|.-||+|+.+||+.|...+.+.-.. +|. |.|| +-|+++|+.|+.|
T Consensus 17 ~~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~ 71 (89)
T 3po0_A 17 SRTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALG 71 (89)
T ss_dssp CSEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCC
Confidence 468889999999999999988765422 343 4443 7899999999763
No 151
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=73.84 E-value=5.7 Score=35.47 Aligned_cols=72 Identities=14% Similarity=0.300 Sum_probs=55.4
Q ss_pred cCCceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCCC
Q 042386 404 SRDSHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQKD 480 (699)
Q Consensus 404 s~d~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ld 480 (699)
....++.|.+++ .=-|+++.|-.|.++..|+...-|..- |--+ .+.+++.|+.|.+| .|+.+.||-.++-+|
T Consensus 27 ~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~g-i~~~--~~rF~FdG~rl~~~-~Tp~dl~medgD~Id 98 (106)
T 2eke_C 27 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG-KEMD--SLRFLYDGIRIQAD-QTPEDLDMEDNDIIE 98 (106)
T ss_dssp CCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT-CCGG--GEEEEETTEECCTT-CCTTTTTCCTTEEEE
T ss_pred CCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhC-CCcc--cEEEEECCeEcCCC-CCHHHcCCCCCCEEE
Confidence 345689999999 888999999999999888777766551 1112 46789999999765 799999987665444
No 152
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=72.69 E-value=3 Score=36.96 Aligned_cols=71 Identities=11% Similarity=0.243 Sum_probs=55.2
Q ss_pred CceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCCC
Q 042386 406 DSHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQKD 480 (699)
Q Consensus 406 d~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ld 480 (699)
.-|+.|.+|+..=-|+++.|-.|.++.-|+...-|..- |--. .+.+++.|+.|.+| .|+.+.||-.++-+|
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~g-i~~~--~~rf~FdG~~l~~~-~Tp~dl~medgD~Id 92 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG-LSMR--QIRFRFDGQPINET-DTPAQLEMEDEDTID 92 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHT-CCTT--TSCEESSSSBCCTT-SCTTTTTCCTTEEEE
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhC-CCcc--eEEEEECCEEcCCC-CCHHHcCCCCCCEEE
Confidence 34899999998888999999999999988887776651 1112 35588999999755 899999988765444
No 153
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=59.62 E-value=3.3 Score=33.41 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=31.2
Q ss_pred CeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCc
Q 042386 419 PELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDD 464 (699)
Q Consensus 419 PEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD 464 (699)
.|.-+|+|+.+||+.|...+-..--. + .++++-|.++|+-|..|
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p~-~-~~v~~~v~vNg~~v~~~ 59 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYPQ-I-NNKKFQVAVNEEFVQKS 59 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCGG-G-TTCCCEEEETTEEECTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCcc-h-hcceEEEEECCEECCCC
Confidence 46778999999999988775443111 1 34445799999999875
No 154
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=56.10 E-value=10 Score=36.09 Aligned_cols=60 Identities=27% Similarity=0.228 Sum_probs=47.8
Q ss_pred eeeEEcCCcchhhhHHHHHHHHHHHHh----------------cCcc---EEEEEeecccccCcchhhhhhcccCCCCC
Q 042386 420 ELFIELPETATVGSLKRRVMEAVNAIL----------------GGGL---RVGVLLQGKKVKDDNKTLLQTGISHDNQK 479 (699)
Q Consensus 420 EL~IeiPEtATVgSLKrtVmeavtail----------------gggl---rVgvllqGKkV~dD~kTL~q~GIs~~~~l 479 (699)
||-|=.--+||.--|=-.|-|+.-+.- +|.- -||..+.|++-.||+|||.+++.--++-|
T Consensus 55 ElQIYTW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDyi 133 (143)
T 4a6q_A 55 ELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYL 133 (143)
T ss_dssp CEEEEECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCEE
T ss_pred eeEEeeCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCEE
Confidence 899999999999888888888765542 2333 28999999999999999999977655543
No 155
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=55.32 E-value=13 Score=33.89 Aligned_cols=72 Identities=17% Similarity=0.312 Sum_probs=53.7
Q ss_pred CCceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCCC
Q 042386 405 RDSHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQKD 480 (699)
Q Consensus 405 ~d~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ld 480 (699)
...|++|.+++..=-|+++.|-.|.++.-|+.+.-|-.- |=-. .+.+++.|+.|.+ +.|..+.|+--++-+|
T Consensus 37 ~~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~G-l~~~--~irFlFDG~rI~~-~~TP~dL~MEDgD~Id 108 (115)
T 3kyd_D 37 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG-VPMN--SLRFLFEGQRIAD-NHTPKELGMEEEDVIE 108 (115)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT-CCTT--SEEEEETTEECCT-TCCTTTTTCCTTCEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhC-CChh--hEEEEECCeECCC-CCCHHHcCCCCCCEEE
Confidence 346899999999888999999999998776665555541 1111 4779999999976 6899999887766554
No 156
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=49.19 E-value=3.6 Score=40.40 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=0.0
Q ss_pred EEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhh
Q 042386 411 LRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLL 469 (699)
Q Consensus 411 l~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~ 469 (699)
+.||++.=-.+.|||.++.||+.||..|.+.. .|--.-. -+++.||... |++||.
T Consensus 3 I~VKtL~GktitLeV~~sdTV~~LK~kI~~ke-GIP~~qQ--RLIf~GK~Le-D~~TLs 57 (189)
T 2xzm_9 3 VQVKTLEGETKIYTLEQGTSVLDLKSQISQDM-GFEIDMM--TLVNNGFIAP-NTELVT 57 (189)
T ss_dssp -----------------------------------------------------------
T ss_pred EEEEcCCCCEEEEEECCcChHHHHHHHHHHHh-CcChhHE--EEEecCeECC-CCCccc
Confidence 45565554556789999999999999997753 1211111 3566787664 568887
No 157
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=48.47 E-value=13 Score=32.84 Aligned_cols=73 Identities=14% Similarity=0.275 Sum_probs=53.5
Q ss_pred CCceeEEEEceeecC-eeeEEcCCcchhhhHHHHHHHHHHHHhcCc-cEEEEEeecccccCcchhhhhhcccCCCCCCCc
Q 042386 405 RDSHVKLRIKSFRVP-ELFIELPETATVGSLKRRVMEAVNAILGGG-LRVGVLLQGKKVKDDNKTLLQTGISHDNQKDVL 482 (699)
Q Consensus 405 ~d~~VKl~IKSf~vP-EL~IeiPEtATVgSLKrtVmeavtailggg-lrVgvllqGKkV~dD~kTL~q~GIs~~~~ld~l 482 (699)
...+++|.+++-.=- |+++.|-.|.+..-|. +|...-.|=- =.|-+++.|.+|.. +.|-.+.|+--++-+|..
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm----~aY~~~~g~~~~~vrF~FDG~rI~~-~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLM----SHYEEAMGLSGRKLSFFFDGTKLSG-RELPADLGMESGDLIEVW 96 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHH----HHHHHHTTCSSSCCEEEETTEECCS-CSCHHHHTCCTTEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHH----HHHHHHHCCCcccEEEEECCEEcCC-CCCHHHcCCCCCCEEEEe
Confidence 445799999998874 8999999999976664 4444433311 14678999999976 469999988877766654
No 158
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=43.75 E-value=24 Score=30.94 Aligned_cols=70 Identities=21% Similarity=0.318 Sum_probs=55.3
Q ss_pred eEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCCCC
Q 042386 409 VKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQKDV 481 (699)
Q Consensus 409 VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ld~ 481 (699)
+.|-..|-+-+.|+++||-|+||.-|=.+--++. =+.-..+|..+..|-.++ .|.|+.-.+|--++.+|.
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~--~I~~~~~IrllFDGdRLd-p~~tp~DlemeD~D~IDv 79 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEV--KISFHERIRLEFEGEWLD-PNDQVQSTELEDEDQVSV 79 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHH--TCCCCTTCEEEETTEECC-TTSBGGGSSCCTTCEEEE
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHc--CCCcCceEEEEEcCcccC-ccCChhhhCCcCCceeee
Confidence 6677889999999999999999987766665554 234456788999999885 577999988888777664
No 159
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=40.16 E-value=20 Score=30.67 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=32.2
Q ss_pred cCeeeEEcC--CcchhhhHHHHHHHHHH----HH--h-c-CccE--EEEEeeccccc
Q 042386 418 VPELFIELP--ETATVGSLKRRVMEAVN----AI--L-G-GGLR--VGVLLQGKKVK 462 (699)
Q Consensus 418 vPEL~IeiP--EtATVgSLKrtVmeavt----ai--l-g-gglr--VgvllqGKkV~ 462 (699)
..|+-||+| +.+||+.|...+.+-.- .+ + . |.|| +-|+++|.-|+
T Consensus 19 ~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~ 75 (99)
T 2qjl_A 19 QRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWE 75 (99)
T ss_dssp CCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGG
T ss_pred CcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcc
Confidence 567888999 78999999888766541 12 2 3 3354 66999998776
No 160
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=39.35 E-value=21 Score=36.54 Aligned_cols=31 Identities=10% Similarity=0.163 Sum_probs=25.5
Q ss_pred CchHHHhhhccCCCCCCCchhhhhhhhhchhcccc
Q 042386 621 GRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARI 655 (699)
Q Consensus 621 GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a~i 655 (699)
+.|+.|-.. |.+||.+-.+|+||.+++...|
T Consensus 172 ~~fk~ia~~----~P~HT~~SWRdRyrKfl~~~gi 202 (246)
T 1ign_A 172 EFFKHFAEE----HAAHTENAWRDRFRKFLLAYGI 202 (246)
T ss_dssp THHHHHHHH----TTTSCHHHHHHHHHHTHHHHCH
T ss_pred HHHHHHHHH----CCCCChhhHHHHHHHHHhhcCh
Confidence 368888763 5899999999999999876655
No 161
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=37.74 E-value=35 Score=27.47 Aligned_cols=44 Identities=14% Similarity=0.124 Sum_probs=29.9
Q ss_pred cCeeeEEcCCcchhhhHHHHHHH---HHHHHhcCccEEEEEeecccccC
Q 042386 418 VPELFIELPETATVGSLKRRVME---AVNAILGGGLRVGVLLQGKKVKD 463 (699)
Q Consensus 418 vPEL~IeiPEtATVgSLKrtVme---avtailggglrVgvllqGKkV~d 463 (699)
..|+-|| |+.+||+.|.+.+.+ .....|..| ++-|+++|+-|..
T Consensus 16 ~~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~-~~~v~vN~~~v~~ 62 (81)
T 1fm0_D 16 TDATEVA-ADFPTVEALRQHMAAQSDRWALALEDG-KLLAAVNQTLVSF 62 (81)
T ss_dssp CSEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCT-TCEEEETTEECCT
T ss_pred CCeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCC-CEEEEECCEECCC
Confidence 3577788 899999999887652 233334322 3469999998853
No 162
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=32.48 E-value=41 Score=33.19 Aligned_cols=70 Identities=13% Similarity=0.282 Sum_probs=54.1
Q ss_pred CceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEeecccccCcchhhhhhcccCCCCCC
Q 042386 406 DSHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQGKKVKDDNKTLLQTGISHDNQKD 480 (699)
Q Consensus 406 d~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllqGKkV~dD~kTL~q~GIs~~~~ld 480 (699)
..|++|+++. .=-|+++.|-.|.++..|+...-|.. .|= -=.+.+++.|+.|.+ +.|..+.|+-.++-+|
T Consensus 27 ~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~-Gi~--~~~~RF~FdG~rI~~-~~TP~dL~MEdgD~Id 96 (200)
T 3pge_A 27 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQ-GKE--MDSLRFLYDGIRIQA-DQTPEDLDMEDNDIIE 96 (200)
T ss_dssp CCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHH-SSC--GGGEEEEETTEECCT-TCCTTTTTCCTTEEEE
T ss_pred CCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHh-CCC--hhhEEEEECCEEcCC-CCCHHHcCCCCCCEEE
Confidence 4589999985 88899999999999998887776654 111 123678999999986 6899999887766544
No 163
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=28.17 E-value=1.9e+02 Score=26.02 Aligned_cols=72 Identities=21% Similarity=0.248 Sum_probs=44.1
Q ss_pred ccccCCceeEEEEceeecCeeeEEcCCcchhhhHHHHHHHHHHHHhcCccEEEEEee---cccc--cCcchhhhhhcccC
Q 042386 401 SFQSRDSHVKLRIKSFRVPELFIELPETATVGSLKRRVMEAVNAILGGGLRVGVLLQ---GKKV--KDDNKTLLQTGISH 475 (699)
Q Consensus 401 ~~~s~d~~VKl~IKSf~vPEL~IeiPEtATVgSLKrtVmeavtailggglrVgvllq---GKkV--~dD~kTL~q~GIs~ 475 (699)
........++|+|+=..=-=|--..+-+.||..|..-|... ....... .|+. .|.+ .|.++||.++|+..
T Consensus 36 ~~d~~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~--~~~~~~F---~L~t~fPrk~l~~~d~~~TL~e~gL~p 110 (124)
T 1wj4_A 36 GIDVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK--GYPNERF---ELLTNFPRRKLSHLDYDITLQEAGLCP 110 (124)
T ss_dssp CCCCSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH--HCCTTTE---EEECSSSCCEETSSCSSSCTTTTTCCS
T ss_pred ccCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc--CCCCCCe---EEecCCCCcCCccCCCCCCHHHCCCCC
Confidence 34444456777765332222556778999999888887543 2222222 3444 4555 46799999999876
Q ss_pred CC
Q 042386 476 DN 477 (699)
Q Consensus 476 ~~ 477 (699)
..
T Consensus 111 sa 112 (124)
T 1wj4_A 111 QE 112 (124)
T ss_dssp SB
T ss_pred ce
Confidence 44
No 164
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=28.09 E-value=42 Score=30.05 Aligned_cols=52 Identities=8% Similarity=0.180 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC--CchHHHhhhccCCCCCCCchhhhhhhhhchhcc
Q 042386 598 RIRRPFSVAEVEALVQAVEKLGT--GRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTA 653 (699)
Q Consensus 598 R~rr~WT~eEveaLv~GVekyG~--GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K~a 653 (699)
.+-.-||.||-..++...++-|. -.|+.|-. .+.+|+.-+++++++.|.+..
T Consensus 31 e~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~----~L~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 31 EKVVLWTREADRVILTMCQEQGAQPHTFSVISQ----QLGNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHH----HHSSCCHHHHHHHHHHHHHHH
T ss_pred CEEEEeccccCHHHHHHHHhcCCChhHHHHHHH----HHccCCHHHHHHHHHHHHHHH
Confidence 36779999999999999999986 46888765 357899999999999998743
No 165
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=27.88 E-value=40 Score=28.66 Aligned_cols=55 Identities=33% Similarity=0.402 Sum_probs=37.0
Q ss_pred eEEEEceee-------cCeeeEEcCCcchhhhHHHHHHHHH---HHHh---cCc--cEEEEEeecccccC
Q 042386 409 VKLRIKSFR-------VPELFIELPETATVGSLKRRVMEAV---NAIL---GGG--LRVGVLLQGKKVKD 463 (699)
Q Consensus 409 VKl~IKSf~-------vPEL~IeiPEtATVgSLKrtVmeav---tail---ggg--lrVgvllqGKkV~d 463 (699)
+++.||=|- ..|.-+|+|+.+||+.|...+-..- ...| .|. =+|-|+++|+-|..
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~ 79 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW 79 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC
Confidence 566666653 3688999999999999887765432 1122 121 23679999998864
No 166
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=25.86 E-value=22 Score=31.34 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=13.9
Q ss_pred eecCeeeEEcCCcchhhh
Q 042386 416 FRVPELFIELPETATVGS 433 (699)
Q Consensus 416 f~vPEL~IeiPEtATVgS 433 (699)
|+-|+|-|||+++|.||.
T Consensus 3 ~~~P~i~I~v~g~~~v~~ 20 (102)
T 2xzz_A 3 YFQSMLSLTLLGAAVVGQ 20 (102)
T ss_dssp ---CEEEEEESSCCCSSS
T ss_pred ccCCcEEEEECCCcccCC
Confidence 678999999999999874
No 167
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=25.06 E-value=15 Score=40.72 Aligned_cols=38 Identities=13% Similarity=0.196 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhh
Q 042386 601 RPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLK 643 (699)
Q Consensus 601 r~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLK 643 (699)
..||.+|...+.+|+.+||. +|..|.. .+.+||.-+|=
T Consensus 190 d~WT~eE~~lFe~al~~yGK-dF~~I~~----~lp~Ksv~e~V 227 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGK-TFHRIQQ----MLPDKSIASLV 227 (482)
T ss_dssp -------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCc-cHHHHHH----HcCCCCHHHHH
Confidence 48999999999999999998 7988874 24556655553
No 168
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=24.77 E-value=62 Score=26.96 Aligned_cols=40 Identities=15% Similarity=0.302 Sum_probs=28.7
Q ss_pred EEcCCcchhhhHHHHHHHHH---HH-Hh----cCcc--EEEEEeecccccC
Q 042386 423 IELPETATVGSLKRRVMEAV---NA-IL----GGGL--RVGVLLQGKKVKD 463 (699)
Q Consensus 423 IeiPEtATVgSLKrtVmeav---ta-il----gggl--rVgvllqGKkV~d 463 (699)
|| ++-+||+.|...+.+.. .. ++ +|.| +|-|+++|.-|++
T Consensus 21 ~~-~~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~ 70 (93)
T 3dwg_C 21 VS-ASGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRF 70 (93)
T ss_dssp EE-ECCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGG
T ss_pred Ee-cCCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccC
Confidence 67 56789999998887643 22 32 3445 4889999999985
No 169
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=24.51 E-value=36 Score=30.48 Aligned_cols=44 Identities=16% Similarity=0.266 Sum_probs=30.6
Q ss_pred CeeeEEcC---CcchhhhHHHHHHHHH----HHHh-c-CccE--EEEEeeccccc
Q 042386 419 PELFIELP---ETATVGSLKRRVMEAV----NAIL-G-GGLR--VGVLLQGKKVK 462 (699)
Q Consensus 419 PEL~IeiP---EtATVgSLKrtVmeav----tail-g-gglr--VgvllqGKkV~ 462 (699)
.|..||+| +.+||+.|-..+-+.. ..++ . |.|| |=|+++|..|+
T Consensus 30 ~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~ 84 (114)
T 1wgk_A 30 KKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWE 84 (114)
T ss_dssp SEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHH
T ss_pred eEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeee
Confidence 46778999 4589999877776654 3344 3 4476 66888887765
No 170
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=21.89 E-value=80 Score=33.09 Aligned_cols=49 Identities=10% Similarity=0.123 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCchHHHhhhccCCCCCCCchhhhhhhhhchh
Q 042386 599 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVH 651 (699)
Q Consensus 599 ~rr~WT~eEveaLv~GVekyG~GkW~~Il~~~~~~f~~RT~VDLKDKWRNL~K 651 (699)
.--.||..+-.+++.|+.+||...|..|-.. +.+.|.-+++.=...+..
T Consensus 109 GF~~W~rrdf~~Fi~a~~kyGr~~~~~IA~e----v~~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 109 GFTAWTKRDFNQFIKANEKYGRDDIDNIAKD----VEGKTPEEVIEYNAVFWE 157 (304)
T ss_dssp SCTTCCHHHHHHHHHHHHHHCTTCHHHHTTS----STTCCHHHHHHHHHHHHH
T ss_pred hhcccCHHHHHHHHHHHHHhCHHHHHHHHHH----hcCCCHHHHHHHHHHHHH
Confidence 4457999999999999999999999999764 346888888766555554
No 171
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=21.41 E-value=38 Score=26.04 Aligned_cols=14 Identities=36% Similarity=0.593 Sum_probs=12.0
Q ss_pred CCCCCCHHHHHHHH
Q 042386 599 IRRPFSVAEVEALV 612 (699)
Q Consensus 599 ~rr~WT~eEveaLv 612 (699)
+.++||+||.+++.
T Consensus 19 RNrpltDEeLD~mL 32 (39)
T 3lqv_P 19 RNRPLSDEELDAMF 32 (39)
T ss_dssp TTCCCCHHHHHHTC
T ss_pred hcCCCCHHHHHHhC
Confidence 57899999999875
No 172
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=20.62 E-value=1.1e+02 Score=28.26 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=22.6
Q ss_pred EEEEceeecCeeeEEcCCcchhhhHHHHHHHHH
Q 042386 410 KLRIKSFRVPELFIELPETATVGSLKRRVMEAV 442 (699)
Q Consensus 410 Kl~IKSf~vPEL~IeiPEtATVgSLKrtVmeav 442 (699)
.|+|+=..==..-+-|-+++|||+|+.+|-.-+
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~ki 45 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARI 45 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHH
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHh
Confidence 344443334455677888999999999876654
Done!