BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042388
(567 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|2F48|A Chain A, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
pdb|2F48|B Chain B, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
Length = 555
Score = 476 bits (1226), Expect = e-134, Method: Compositional matrix adjust.
Identities = 246/539 (45%), Positives = 338/539 (62%), Gaps = 18/539 (3%)
Query: 35 LPSVLKKTFN---VVDGAPSSASGNPEEIKKLFPKLFGQPSARLVECDPKACSMENKSLK 91
LP++LKK FN +V G + A + + +K+ F +G P E + +K+L
Sbjct: 17 LPNILKKDFNNISLVYGENTEAIQDRQALKEFFKNTYGLPIISFTEGESSLSF--SKALN 74
Query: 92 IGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYR 151
IG++LSGG APGGHNVISG+FD +++ SKL+GFKGGP G+++ +EL+ I YR
Sbjct: 75 IGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYR 134
Query: 152 NQGGFDMICSGRDKIETPEQFKQAEETAKKXXXXXXXXXXXXXSNTNACLLAENFRSKDM 211
N GGFD++ SGR KIET E + +A AK+ SNTNA +LAE F+
Sbjct: 135 NTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGE 194
Query: 212 KTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDARSTGKYYHFVRLMGRA 271
+VIG PKTID DL+ + SFGFD+A KI+SE+IGN+ DA ST KY+HFV+LMGR+
Sbjct: 195 NIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVKLMGRS 254
Query: 272 ASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVILIPEGL 331
ASH+ LECAL+THPNI I+ EEV AKK+TL + D + +I KRS G N+GV+++PEGL
Sbjct: 255 ASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGL 314
Query: 332 IDFIPEVQQLIAELNEILAHDGVDQDG--------AWKKKLKSQSQELFELFPKAIQEQL 383
I+FIPEV+ L+ EL +I + + G + KL + ++ P IQ +L
Sbjct: 315 IEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQFEL 374
Query: 384 ---LLERDPHGNVQVAKIETEKMLIQMVETELNKMKQKGAYKGQFNGQSHFFGYEGRCGL 440
+LERDPHGN V+++ TEK+ I+M+++ LN MK++G YKG F HFFGYEGR
Sbjct: 375 IKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKGSFTPVDHFFGYEGRSAF 434
Query: 441 PTNFDXXXXXXXXXXXXXXXXXGKTGLISSVGNLGEPVEEWTVGGTALTSLMDVERRHGK 500
P+NFD G TG +S + NL +W GG LT LM++E R+G+
Sbjct: 435 PSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWIAGGVPLTMLMNMEERYGE 494
Query: 501 FKPVIKKAMVELEGIPFKTFASLREDWTIKNLYVSPGPIQFVGPN--ANDINHTLKLEL 557
KPVIKKA+V+LEG PFK F R+ W + NLY+ PGP+Q+ G + ++I TLKLEL
Sbjct: 495 KKPVIKKALVDLEGRPFKEFVKNRDKWALNNLYLYPGPVQYFGSSEIVDEITETLKLEL 553
>pdb|3PFK|A Chain A, Phosphofructokinase. Structure And Control
pdb|4PFK|A Chain A, Phosphofructokinase. Structure And Control
Length = 319
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 107/257 (41%), Gaps = 30/257 (11%)
Query: 91 KIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPY 150
+IGV+ SGG +PG + I + + +G ++YG G AG++ +L +
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVR--KAIYHGVEVYGVYHGYAGLIAGNIKKLEVGDVGDI 60
Query: 151 RNQGGFDMICSGRDKIETPEQFKQAEETAKKXXXXXXXXXXXXXSNTNACLLAENFRSKD 210
++GG + + + +T E K+ E KK S A L E+
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEH----- 115
Query: 211 MKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDARSTGKYYHFVRLMGR 270
+G P TID D+ + + GFDTA + I + A S + Y + +MGR
Sbjct: 116 -GFPCVGVPGTIDNDIPGTDF--TIGFDTALNTVIDAIDKIRDTATSHERTY-VIEVMGR 171
Query: 271 AASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDY-ITDIICKR---SEAGYNYGVIL 326
A I L L +I E DY + D+I + E G + +I+
Sbjct: 172 HAGDIALWSGLAGGAETILIPE------------ADYDMNDVIARLKRGHERGKKHSIII 219
Query: 327 IPEGL---IDFIPEVQQ 340
+ EG+ +DF ++Q+
Sbjct: 220 VAEGVGSGVDFGRQIQE 236
>pdb|1ZXX|A Chain A, The Crystal Structure Of Phosphofructokinase From
Lactobacillus Delbrueckii
Length = 319
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 105/257 (40%), Gaps = 27/257 (10%)
Query: 91 KIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPY 150
+IG++ SGG APG + + + NG +++G + G AG++ L +E +
Sbjct: 3 RIGILTSGGDAPGMNAAVRAVTRV--AIANGLEVFGIRYGFAGLVAGDIFPLESEDVAHL 60
Query: 151 RNQGGFDMICSGR--DKIETPEQFKQAEETAKKXXXXXXXXXXXXXSNTNACLLAENFRS 208
N G + S R + E Q E+ K + L F S
Sbjct: 61 INVSG-TFLYSARYPEFAEEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRHGFNS 119
Query: 209 KDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDARSTGKYYHFVRLM 268
IG P TID D+ + + G+DTAC + I + A S + + V +M
Sbjct: 120 -------IGLPGTIDNDIPYTD--ATIGYDTACMTAMDAIDKIRDTASSHHRVF-IVNVM 169
Query: 269 GRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVILIP 328
GR I + + + +I E ++ I + + + E+G ++G++++
Sbjct: 170 GRNCGDIAMRVGVACGADAIVIPERPYDVEE--------IANRLKQAQESGKDHGLVVVA 221
Query: 329 EGLIDFIPEVQQLIAEL 345
EG++ Q +AEL
Sbjct: 222 EGVM----TADQFMAEL 234
>pdb|6PFK|A Chain A, Phosphofructokinase, Inhibited T-State
pdb|6PFK|B Chain B, Phosphofructokinase, Inhibited T-State
pdb|6PFK|C Chain C, Phosphofructokinase, Inhibited T-State
pdb|6PFK|D Chain D, Phosphofructokinase, Inhibited T-State
pdb|3U39|A Chain A, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|B Chain B, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|C Chain C, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|D Chain D, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
Length = 319
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 107/257 (41%), Gaps = 30/257 (11%)
Query: 91 KIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPY 150
+IGV+ SGG +PG + I + + +G ++YG G AG++ +L +
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVR--KAIYHGVEVYGVYHGYAGLIAGNIKKLEVGDVGDI 60
Query: 151 RNQGGFDMICSGRDKIETPEQFKQAEETAKKXXXXXXXXXXXXXSNTNACLLAENFRSKD 210
++GG + + + +T E K+ E KK S A L E+
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGGDGSYQGAKKLTEH----- 115
Query: 211 MKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDARSTGKYYHFVRLMGR 270
+G P TID D+ + + GFDTA + I + A S + Y + +MGR
Sbjct: 116 -GFPCVGVPGTIDNDIPGTDF--TIGFDTALNTVIDAIDKIRDTATSHERTY-VIEVMGR 171
Query: 271 AASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDY-ITDIICKR---SEAGYNYGVIL 326
A I L L +I E DY + D+I + E G + +I+
Sbjct: 172 HAGDIALWSGLAGGAETILIPE------------ADYDMNDVIARLKRGHERGKKHSIII 219
Query: 327 IPEGL---IDFIPEVQQ 340
+ EG+ +DF ++Q+
Sbjct: 220 VAEGVGSGVDFGRQIQE 236
>pdb|1PFK|A Chain A, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|1PFK|B Chain B, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|2PFK|A Chain A, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|B Chain B, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|C Chain C, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|D Chain D, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
Length = 320
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 96/237 (40%), Gaps = 28/237 (11%)
Query: 91 KIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPY 150
KIGV+ SGG APG + I G+ T G ++ G G G+ + + V+L +
Sbjct: 4 KIGVLTSGGDAPGMNAAIRGVVR--SALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDM 61
Query: 151 RNQGGFDMICSGRDKIETPEQFKQ-AEETAKKXXXXXXXXXXXXXSNTNACLLAENFRSK 209
N+GG + S R E + A E KK S A L E
Sbjct: 62 INRGG-TFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTE----- 115
Query: 210 DMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDARSTGKYYHFVRLMG 269
M IG P TID D+K + + GF TA E I + + D S+ + V +MG
Sbjct: 116 -MGFPCIGLPGTIDNDIKGTDY--TIGFFTALSTVVEAI-DRLRDTSSSHQRISVVEVMG 171
Query: 270 RAASHITLECALQTHPNITIIGE----------EVAA-----KKQTLKNVTDYITDI 311
R +TL A+ ++ E E+ A KK + +T+++ D+
Sbjct: 172 RYCGDLTLAAAIAGGCEFVVVPEVEFSREDLVNEIKAGIAKGKKHAIVAITEHMCDV 228
>pdb|1MTO|A Chain A, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|B Chain B, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|C Chain C, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|D Chain D, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|E Chain E, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|F Chain F, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|G Chain G, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|H Chain H, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
Length = 319
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 107/257 (41%), Gaps = 30/257 (11%)
Query: 91 KIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPY 150
+IGV+ SGG +PG + I + + +G ++YG G AG++ +L +
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVR--KAIYHGVEVYGVYHGYAGLIAGNIKKLEVGDVGDI 60
Query: 151 RNQGGFDMICSGRDKIETPEQFKQAEETAKKXXXXXXXXXXXXXSNTNACLLAENFRSKD 210
++GG + + + +T E K+ E KK S A L E+
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGGDGSYQGAKKLTEH----- 115
Query: 211 MKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDARSTGKYYHFVRLMGR 270
+G P TID D+ + + GFDTA + I + A S + + + +MGR
Sbjct: 116 -GFPCVGVPGTIDNDIPGTDF--TIGFDTALNTVIDAIDKIRDTATSHERTW-VIEVMGR 171
Query: 271 AASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDY-ITDIICKR---SEAGYNYGVIL 326
A I L L +I E DY + D+I + E G + +I+
Sbjct: 172 HAGDIALYSGLAGGAETILIPE------------ADYDMNDVIARLKRGHERGKKHSIII 219
Query: 327 IPEGL---IDFIPEVQQ 340
+ EG+ +DF ++Q+
Sbjct: 220 VAEGVGSGVDFGRQIQE 236
>pdb|2HIG|A Chain A, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|2HIG|B Chain B, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|3F5M|A Chain A, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|B Chain B, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|C Chain C, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|D Chain D, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
Length = 487
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 80/187 (42%), Gaps = 10/187 (5%)
Query: 92 IGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMK---CKYVELSTEYIY 148
IG+V GG PG ++VI I N ++ GF+ G G+ K +EL +
Sbjct: 100 IGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVT 159
Query: 149 PYRNQGGFDMICSGRDKIETPEQFKQAEETAKKXXXXXXXXXXXXXSNTNACLLAENFRS 208
+ GG ++ S R P+ K+ +T ++ + A ++++ +
Sbjct: 160 NIHHYGG-TILGSSRG----PQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKR 214
Query: 209 KDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDARSTGKYYHFVRLM 268
+ + V G PKTID DL +FGF TA + + I +A S V+LM
Sbjct: 215 RGVDISVFGVPKTIDNDLSFSH--RTFGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLM 272
Query: 269 GRAASHI 275
GR + I
Sbjct: 273 GRDSGFI 279
>pdb|4A3S|A Chain A, Crystal Structure Of Pfk From Bacillus Subtilis
pdb|4A3S|B Chain B, Crystal Structure Of Pfk From Bacillus Subtilis
Length = 319
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 97/245 (39%), Gaps = 27/245 (11%)
Query: 91 KIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPY 150
+IGV+ SGG +PG + + + + + ++YG G AG++ K +L +
Sbjct: 3 RIGVLTSGGDSPGMNAAVRAVVR--KAIYHDVEVYGIYNGYAGLISGKIEKLELGSVGDI 60
Query: 151 RNQGGFDMICSGRDKIETPEQFKQAEETAKKXXXXXXXXXXXXXSNTNACLLAENFRSKD 210
++GG + + + +T E ++ KK S A L E+
Sbjct: 61 IHRGGTKLYTARCPEFKTVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH----- 115
Query: 211 MKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDARSTGKYYHFVRLMGR 270
+G P TID D+ + + GFDTA + I + A S + Y + +MGR
Sbjct: 116 -GFPCVGVPGTIDNDIPGTDF--TIGFDTALNTVIDAIDKIRDTATSHERTY-VIEVMGR 171
Query: 271 AASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYG----VIL 326
A I L L +I E DY I R + G+ G +I+
Sbjct: 172 HAGDIALWAGLAGGAESILIPE------------ADYDMHEIIARLKRGHERGKKHSIII 219
Query: 327 IPEGL 331
+ EG+
Sbjct: 220 VAEGV 224
>pdb|1Y3T|A Chain A, Crystal Structure Of Yxag, A Dioxygenase From Bacillus
Subtilis
pdb|1Y3T|B Chain B, Crystal Structure Of Yxag, A Dioxygenase From Bacillus
Subtilis
Length = 337
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 243 IFSEMIGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITII 290
+F + VM + RSTG + V L G L TH I ++
Sbjct: 27 LFGRQVATVMANGRSTGDLFEIVLLSGGKGDAFPLHVHKDTHEGILVL 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,996,683
Number of Sequences: 62578
Number of extensions: 704600
Number of successful extensions: 1382
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1368
Number of HSP's gapped (non-prelim): 11
length of query: 567
length of database: 14,973,337
effective HSP length: 104
effective length of query: 463
effective length of database: 8,465,225
effective search space: 3919399175
effective search space used: 3919399175
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)