Query 042388
Match_columns 567
No_of_seqs 259 out of 1400
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 05:46:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042388.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042388hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02251 pyrophosphate-depende 100.0 2E-155 5E-160 1270.8 53.4 547 13-560 21-567 (568)
2 cd00765 Pyrophosphate_PFK Phos 100.0 3E-150 7E-155 1228.4 50.5 535 20-556 2-550 (550)
3 PLN03028 pyrophosphate--fructo 100.0 1E-149 2E-154 1234.9 51.1 539 19-559 2-554 (610)
4 PRK07085 diphosphate--fructose 100.0 5E-148 1E-152 1214.8 51.7 537 20-560 2-551 (555)
5 TIGR02477 PFKA_PPi diphosphate 100.0 3E-147 7E-152 1206.3 50.4 532 24-557 1-539 (539)
6 PTZ00468 phosphofructokinase f 100.0 3E-139 6E-144 1200.7 50.8 533 19-557 29-565 (1328)
7 PTZ00287 6-phosphofructokinase 100.0 4E-136 8E-141 1182.0 43.6 541 16-565 759-1349(1419)
8 PTZ00287 6-phosphofructokinase 100.0 1E-134 3E-139 1169.5 49.3 536 17-561 102-641 (1419)
9 PTZ00468 phosphofructokinase f 100.0 5E-123 1E-127 1066.5 43.8 533 16-558 581-1228(1328)
10 cd00363 PFK Phosphofructokinas 100.0 8.4E-85 1.8E-89 683.3 35.6 336 90-521 1-337 (338)
11 PRK14072 6-phosphofructokinase 100.0 1.7E-81 3.8E-86 673.0 36.5 353 89-514 3-371 (416)
12 COG0205 PfkA 6-phosphofructoki 100.0 7.9E-82 1.7E-86 656.7 31.3 343 89-521 2-345 (347)
13 TIGR02483 PFK_mixed phosphofru 100.0 3.7E-78 8E-83 629.0 33.7 320 91-491 1-323 (324)
14 PLN02564 6-phosphofructokinase 100.0 4.3E-77 9.4E-82 641.8 37.6 356 87-523 85-442 (484)
15 PRK03202 6-phosphofructokinase 100.0 2.7E-77 5.8E-82 621.3 34.2 300 90-494 2-303 (320)
16 PTZ00286 6-phospho-1-fructokin 100.0 6.1E-77 1.3E-81 641.6 37.4 330 88-491 86-416 (459)
17 PLN02884 6-phosphofructokinase 100.0 5.2E-77 1.1E-81 635.0 35.1 346 89-521 53-402 (411)
18 TIGR02482 PFKA_ATP 6-phosphofr 100.0 1.5E-76 3.3E-81 610.6 33.6 299 91-491 1-300 (301)
19 PRK14071 6-phosphofructokinase 100.0 8.7E-76 1.9E-80 619.0 35.5 323 88-493 3-336 (360)
20 PRK06830 diphosphate--fructose 100.0 1.1E-75 2.4E-80 628.7 36.7 350 88-522 79-432 (443)
21 cd00763 Bacterial_PFK Phosphof 100.0 7.6E-76 1.6E-80 609.7 34.1 301 90-495 1-302 (317)
22 PRK06555 pyrophosphate--fructo 100.0 1.2E-75 2.6E-80 620.0 36.1 336 89-493 3-378 (403)
23 TIGR02478 6PF1K_euk 6-phosphof 100.0 8.3E-73 1.8E-77 640.2 36.3 351 90-531 1-377 (745)
24 cd00764 Eukaryotic_PFK Phospho 100.0 5.8E-72 1.3E-76 630.6 36.5 351 88-529 2-378 (762)
25 PF00365 PFK: Phosphofructokin 100.0 7.4E-72 1.6E-76 572.4 30.0 281 90-462 1-282 (282)
26 TIGR02478 6PF1K_euk 6-phosphof 100.0 5.9E-70 1.3E-74 617.0 35.7 329 86-506 386-732 (745)
27 cd00764 Eukaryotic_PFK Phospho 100.0 3E-66 6.5E-71 584.4 34.2 329 86-506 386-732 (762)
28 KOG2440 Pyrophosphate-dependen 100.0 3.4E-57 7.4E-62 496.4 3.3 537 16-557 41-615 (666)
29 KOG2440 Pyrophosphate-dependen 100.0 5.6E-36 1.2E-40 329.4 21.3 355 94-546 1-384 (666)
30 cd01537 PBP1_Repressors_Sugar_ 88.3 21 0.00045 34.4 15.3 103 91-240 1-103 (264)
31 PRK00561 ppnK inorganic polyph 88.0 0.89 1.9E-05 46.9 5.5 55 171-242 16-75 (259)
32 PRK04761 ppnK inorganic polyph 87.9 1.2 2.7E-05 45.6 6.5 55 169-240 5-65 (246)
33 COG3199 Predicted inorganic po 87.1 0.86 1.9E-05 48.5 4.9 52 167-224 84-135 (355)
34 PF00465 Fe-ADH: Iron-containi 84.7 2.4 5.3E-05 45.3 7.1 57 168-224 63-133 (366)
35 PF01513 NAD_kinase: ATP-NAD k 84.2 0.96 2.1E-05 46.9 3.6 39 177-220 70-108 (285)
36 PF13407 Peripla_BP_4: Peripla 83.1 43 0.00094 32.9 14.8 173 92-313 1-179 (257)
37 PRK04885 ppnK inorganic polyph 82.7 2.4 5.3E-05 43.8 5.8 68 170-252 15-91 (265)
38 PRK14077 pnk inorganic polypho 82.5 2.8 6E-05 43.9 6.2 53 183-252 64-118 (287)
39 cd08180 PDD 1,3-propanediol de 82.4 4 8.7E-05 43.2 7.5 54 168-221 63-118 (332)
40 PLN02929 NADH kinase 81.4 2.1 4.5E-05 45.2 4.7 54 183-242 64-123 (301)
41 PLN02935 Bifunctional NADH kin 80.6 3.2 7E-05 46.6 6.1 53 183-252 262-316 (508)
42 cd06321 PBP1_ABC_sugar_binding 80.4 57 0.0012 32.2 14.7 89 91-219 1-89 (271)
43 PRK14075 pnk inorganic polypho 80.4 3.4 7.4E-05 42.4 5.9 49 183-251 41-91 (256)
44 cd08551 Fe-ADH iron-containing 80.0 5.3 0.00012 42.8 7.5 55 168-222 65-132 (370)
45 PRK01911 ppnK inorganic polyph 79.9 4.1 8.9E-05 42.8 6.4 54 183-253 64-119 (292)
46 cd08189 Fe-ADH5 Iron-containin 79.6 5.5 0.00012 42.9 7.5 55 168-222 68-136 (374)
47 cd08177 MAR Maleylacetate redu 79.2 5 0.00011 42.6 6.9 53 168-225 62-114 (337)
48 cd08172 GlyDH-like1 Glycerol d 78.3 5.6 0.00012 42.4 7.0 52 167-223 60-111 (347)
49 PRK15454 ethanol dehydrogenase 78.0 6.6 0.00014 42.8 7.5 38 168-205 91-128 (395)
50 COG3155 ElbB Uncharacterized p 77.4 5.3 0.00011 38.5 5.6 96 89-200 1-102 (217)
51 cd08193 HVD 5-hydroxyvalerate 77.0 7.4 0.00016 41.9 7.5 54 168-221 68-134 (376)
52 cd07766 DHQ_Fe-ADH Dehydroquin 76.7 6.7 0.00014 41.3 6.9 54 168-224 63-116 (332)
53 cd08186 Fe-ADH8 Iron-containin 75.8 8.1 0.00018 41.8 7.5 38 168-205 69-106 (383)
54 cd08179 NADPH_BDH NADPH-depend 75.8 8.1 0.00018 41.6 7.4 37 168-204 66-102 (375)
55 TIGR02638 lactal_redase lactal 75.5 8.6 0.00019 41.5 7.5 54 168-221 71-139 (379)
56 PRK09860 putative alcohol dehy 75.4 8.9 0.00019 41.6 7.6 54 168-221 73-139 (383)
57 cd08182 HEPD Hydroxyethylphosp 75.3 8.7 0.00019 41.2 7.5 54 168-221 62-132 (367)
58 cd08176 LPO Lactadehyde:propan 75.2 8.9 0.00019 41.3 7.5 54 168-221 70-136 (377)
59 cd08170 GlyDH Glycerol dehydro 75.1 6.4 0.00014 41.9 6.4 50 168-222 62-111 (351)
60 PRK00843 egsA NAD(P)-dependent 75.0 7.6 0.00016 41.5 6.9 53 168-225 72-124 (350)
61 cd08185 Fe-ADH1 Iron-containin 75.0 8.3 0.00018 41.6 7.2 38 168-205 68-105 (380)
62 PRK04539 ppnK inorganic polyph 74.6 3.7 8E-05 43.2 4.3 53 183-252 68-122 (296)
63 cd08194 Fe-ADH6 Iron-containin 74.2 9.7 0.00021 41.0 7.5 54 168-221 65-131 (375)
64 cd08178 AAD_C C-terminal alcoh 74.1 9.3 0.0002 41.6 7.4 36 168-203 63-98 (398)
65 TIGR01357 aroB 3-dehydroquinat 73.8 8.5 0.00018 40.9 6.9 52 168-222 63-117 (344)
66 cd08181 PPD-like 1,3-propanedi 73.7 10 0.00022 40.6 7.5 54 168-221 68-133 (357)
67 PRK02231 ppnK inorganic polyph 73.6 4 8.7E-05 42.4 4.2 43 183-242 42-84 (272)
68 cd08173 Gro1PDH Sn-glycerol-1- 73.6 8.6 0.00019 40.8 6.9 54 168-226 63-116 (339)
69 PRK03708 ppnK inorganic polyph 73.4 2.8 6E-05 43.7 3.0 43 182-242 56-98 (277)
70 PRK03501 ppnK inorganic polyph 73.2 8 0.00017 40.1 6.2 58 170-242 17-83 (264)
71 PRK02649 ppnK inorganic polyph 72.2 4.5 9.7E-05 42.8 4.2 52 183-251 68-121 (305)
72 cd08184 Fe-ADH3 Iron-containin 72.2 12 0.00026 40.2 7.5 55 168-222 63-133 (347)
73 PRK15138 aldehyde reductase; P 72.0 11 0.00024 40.9 7.4 37 168-204 70-106 (387)
74 cd08171 GlyDH-like2 Glycerol d 71.9 9.4 0.0002 40.6 6.7 50 168-222 63-112 (345)
75 cd08183 Fe-ADH2 Iron-containin 71.8 11 0.00025 40.5 7.4 38 168-205 60-97 (374)
76 PRK01231 ppnK inorganic polyph 71.7 8.2 0.00018 40.5 6.1 53 183-252 62-116 (295)
77 cd08195 DHQS Dehydroquinate sy 71.0 10 0.00023 40.3 6.8 52 168-222 67-121 (345)
78 PRK03372 ppnK inorganic polyph 70.9 4.8 0.0001 42.6 4.1 53 183-252 72-126 (306)
79 PRK03378 ppnK inorganic polyph 70.9 5.2 0.00011 42.0 4.3 43 183-242 63-105 (292)
80 PF07905 PucR: Purine cataboli 70.9 15 0.00034 33.1 6.9 95 120-220 10-107 (123)
81 cd06305 PBP1_methylthioribose_ 70.3 1.1E+02 0.0025 29.9 14.4 86 91-218 1-86 (273)
82 PRK09423 gldA glycerol dehydro 69.8 11 0.00024 40.5 6.6 48 169-221 70-117 (366)
83 cd08550 GlyDH-like Glycerol_de 69.7 11 0.00025 40.1 6.7 50 168-222 62-111 (349)
84 PRK10624 L-1,2-propanediol oxi 69.3 15 0.00032 39.8 7.6 54 168-221 72-140 (382)
85 PRK00002 aroB 3-dehydroquinate 69.0 12 0.00027 40.0 6.9 52 168-222 74-128 (358)
86 TIGR01918 various_sel_PB selen 68.1 23 0.00049 39.2 8.5 158 55-217 183-371 (431)
87 cd08192 Fe-ADH7 Iron-containin 67.6 16 0.00036 39.1 7.5 38 168-205 66-103 (370)
88 cd08196 DHQS-like1 Dehydroquin 66.9 16 0.00035 39.2 7.1 107 168-312 58-167 (346)
89 COG1844 Uncharacterized protei 66.2 34 0.00074 31.2 7.8 65 186-269 2-66 (125)
90 TIGR03405 Phn_Fe-ADH phosphona 66.2 18 0.0004 38.7 7.4 38 168-205 63-102 (355)
91 TIGR03822 AblA_like_2 lysine-2 65.9 1.1E+02 0.0023 32.5 13.1 166 93-271 139-310 (321)
92 cd08199 EEVS 2-epi-5-epi-valio 65.6 18 0.00039 38.9 7.2 52 168-222 69-124 (354)
93 cd08191 HHD 6-hydroxyhexanoate 65.5 20 0.00042 38.9 7.6 53 169-221 65-130 (386)
94 PRK13849 putative crown gall t 65.1 50 0.0011 33.3 9.9 125 191-327 11-148 (231)
95 cd08187 BDH Butanol dehydrogen 64.3 20 0.00043 38.8 7.3 54 168-221 71-137 (382)
96 COG1454 EutG Alcohol dehydroge 64.1 20 0.00043 39.1 7.2 37 168-204 71-107 (377)
97 PRK11914 diacylglycerol kinase 64.1 20 0.00044 37.2 7.2 61 169-239 50-110 (306)
98 cd08190 HOT Hydroxyacid-oxoaci 63.9 20 0.00044 39.2 7.4 36 168-203 65-100 (414)
99 cd08188 Fe-ADH4 Iron-containin 63.6 23 0.00049 38.3 7.6 36 168-203 70-105 (377)
100 PRK02155 ppnK NAD(+)/NADH kina 63.5 8.6 0.00019 40.3 4.2 52 183-251 63-116 (291)
101 cd06310 PBP1_ABC_sugar_binding 61.7 1.7E+02 0.0036 28.8 13.2 88 91-218 1-88 (273)
102 cd06308 PBP1_sensor_kinase_lik 61.5 1.4E+02 0.0031 29.4 12.5 45 170-218 43-87 (270)
103 cd08175 G1PDH Glycerol-1-phosp 61.4 18 0.00038 38.6 6.2 49 167-221 65-113 (348)
104 cd08549 G1PDH_related Glycerol 60.9 22 0.00048 37.7 6.8 52 168-225 66-117 (332)
105 cd08169 DHQ-like Dehydroquinat 60.2 26 0.00057 37.5 7.3 52 168-222 65-119 (344)
106 PLN02834 3-dehydroquinate synt 60.0 25 0.00054 39.0 7.2 52 168-222 145-199 (433)
107 cd08197 DOIS 2-deoxy-scyllo-in 59.7 27 0.00057 37.7 7.2 52 168-222 66-120 (355)
108 cd01391 Periplasmic_Binding_Pr 59.6 1.6E+02 0.0034 27.8 12.5 120 91-251 1-122 (269)
109 PLN02727 NAD kinase 59.3 10 0.00022 45.5 4.2 53 183-252 743-797 (986)
110 TIGR00520 asnASE_II L-asparagi 58.5 47 0.001 35.8 8.8 49 168-218 86-138 (349)
111 PRK13054 lipid kinase; Reviewe 57.8 22 0.00048 36.9 6.1 53 173-227 46-99 (300)
112 PRK13951 bifunctional shikimat 57.7 24 0.00052 39.7 6.7 112 123-243 173-289 (488)
113 PF00781 DAGK_cat: Diacylglyce 57.5 13 0.00029 33.5 3.9 52 184-243 55-108 (130)
114 COG4981 Enoyl reductase domain 57.2 90 0.0019 35.7 10.7 85 182-290 122-217 (717)
115 COG0371 GldA Glycerol dehydrog 55.9 26 0.00056 38.0 6.3 56 168-228 69-124 (360)
116 PRK13337 putative lipid kinase 55.9 20 0.00043 37.4 5.3 52 173-227 47-98 (304)
117 PRK14076 pnk inorganic polypho 55.5 13 0.00028 42.6 4.2 43 183-242 348-390 (569)
118 COG0061 nadF NAD kinase [Coenz 55.1 29 0.00063 36.1 6.4 57 182-257 54-110 (281)
119 PRK06203 aroB 3-dehydroquinate 54.9 30 0.00065 37.8 6.7 50 169-221 94-146 (389)
120 cd01575 PBP1_GntR Ligand-bindi 54.8 1.4E+02 0.0029 29.2 10.9 84 91-218 1-84 (268)
121 PF02844 GARS_N: Phosphoribosy 54.1 16 0.00035 32.4 3.7 93 90-219 1-93 (100)
122 PF02601 Exonuc_VII_L: Exonucl 54.1 83 0.0018 33.0 9.7 96 85-217 10-112 (319)
123 PF02401 LYTB: LytB protein; 53.7 27 0.00058 36.6 5.8 52 170-223 197-248 (281)
124 PRK07360 FO synthase subunit 2 53.3 2.1E+02 0.0046 30.9 12.9 188 88-296 107-331 (371)
125 TIGR00147 lipid kinase, YegS/R 53.0 17 0.00036 37.5 4.2 44 179-227 53-98 (293)
126 cd08198 DHQS-like2 Dehydroquin 52.8 31 0.00066 37.5 6.3 50 169-221 82-134 (369)
127 TIGR00519 asnASE_I L-asparagin 51.8 76 0.0016 34.0 9.0 48 168-217 60-109 (336)
128 PRK15408 autoinducer 2-binding 51.6 3.2E+02 0.0069 28.9 14.4 107 88-239 22-128 (336)
129 cd06298 PBP1_CcpA_like Ligand- 51.3 60 0.0013 31.8 7.7 69 169-248 41-111 (268)
130 cd06283 PBP1_RegR_EndR_KdgR_li 50.5 2.4E+02 0.0051 27.4 11.9 99 92-239 2-100 (267)
131 TIGR01917 gly_red_sel_B glycin 49.8 38 0.00083 37.4 6.4 47 171-217 324-371 (431)
132 PRK02645 ppnK inorganic polyph 49.5 20 0.00042 37.9 4.1 54 183-252 57-113 (305)
133 PRK13805 bifunctional acetalde 49.3 44 0.00094 40.3 7.5 36 168-203 524-559 (862)
134 cd01538 PBP1_ABC_xylose_bindin 49.1 78 0.0017 31.9 8.4 102 91-238 1-102 (288)
135 cd06281 PBP1_LacI_like_5 Ligan 49.0 1.5E+02 0.0033 29.1 10.3 90 91-223 1-90 (269)
136 PRK13055 putative lipid kinase 48.6 32 0.00069 36.5 5.6 51 173-227 49-100 (334)
137 PRK10586 putative oxidoreducta 48.3 36 0.00078 36.7 6.0 57 168-230 72-128 (362)
138 PRK01185 ppnK inorganic polyph 48.3 20 0.00043 37.3 3.8 50 183-252 52-103 (271)
139 PRK13057 putative lipid kinase 48.2 47 0.001 34.2 6.6 59 169-238 37-95 (287)
140 TIGR01162 purE phosphoribosyla 47.6 38 0.00083 32.5 5.3 50 167-222 37-86 (156)
141 cd06299 PBP1_LacI_like_13 Liga 47.2 93 0.002 30.4 8.4 100 91-239 1-100 (265)
142 TIGR03702 lip_kinase_YegS lipi 46.7 47 0.001 34.4 6.4 53 173-227 42-95 (293)
143 PF04009 DUF356: Protein of un 46.7 59 0.0013 29.2 5.9 62 187-267 1-63 (107)
144 PRK06186 hypothetical protein; 46.6 21 0.00045 36.3 3.6 59 183-259 53-113 (229)
145 PF13685 Fe-ADH_2: Iron-contai 46.1 29 0.00062 35.7 4.6 55 168-227 60-114 (250)
146 COG0414 PanC Panthothenate syn 45.4 32 0.0007 35.9 4.8 49 242-291 5-54 (285)
147 cd06289 PBP1_MalI_like Ligand- 44.4 1E+02 0.0022 30.1 8.1 59 170-238 42-100 (268)
148 cd06320 PBP1_allose_binding Pe 44.3 2.5E+02 0.0054 27.7 11.0 92 91-222 1-92 (275)
149 TIGR00215 lpxB lipid-A-disacch 44.2 2.8E+02 0.006 29.9 12.1 106 186-294 8-124 (385)
150 cd06315 PBP1_ABC_sugar_binding 44.0 2.8E+02 0.0061 27.7 11.5 67 90-194 1-67 (280)
151 PRK05670 anthranilate synthase 43.6 32 0.0007 33.2 4.3 51 180-245 40-90 (189)
152 cd08174 G1PDH-like Glycerol-1- 43.5 50 0.0011 34.8 6.1 52 171-227 62-114 (331)
153 PRK13059 putative lipid kinase 43.1 44 0.00096 34.7 5.6 51 181-239 54-104 (295)
154 TIGR02634 xylF D-xylose ABC tr 43.1 3.8E+02 0.0082 27.3 13.2 46 169-218 40-85 (302)
155 PRK11096 ansB L-asparaginase I 42.7 65 0.0014 34.8 6.8 48 168-217 83-132 (347)
156 TIGR03107 glu_aminopep glutamy 42.1 1.6E+02 0.0035 31.7 9.7 111 106-220 184-312 (350)
157 cd07995 TPK Thiamine pyrophosp 42.0 74 0.0016 31.4 6.7 102 94-205 2-117 (208)
158 TIGR00238 KamA family protein. 41.7 1.5E+02 0.0033 31.5 9.5 113 93-211 162-282 (331)
159 PF01761 DHQ_synthase: 3-dehyd 41.7 56 0.0012 33.8 5.9 69 167-243 10-81 (260)
160 PRK15458 tagatose 6-phosphate 41.0 5.5E+02 0.012 28.6 14.9 140 90-265 15-172 (426)
161 PF00710 Asparaginase: Asparag 40.9 2.1E+02 0.0046 30.2 10.3 50 168-218 55-106 (313)
162 TIGR00566 trpG_papA glutamine 39.4 38 0.00083 32.8 4.1 52 179-245 39-90 (188)
163 TIGR02153 gatD_arch glutamyl-t 39.2 95 0.0021 34.2 7.5 50 168-218 121-173 (404)
164 PRK05647 purN phosphoribosylgl 39.2 1.2E+02 0.0025 30.1 7.5 26 166-191 62-88 (200)
165 PRK00861 putative lipid kinase 39.1 55 0.0012 33.9 5.5 57 173-239 47-103 (300)
166 PRK12361 hypothetical protein; 38.9 43 0.00094 38.0 5.0 51 172-227 286-336 (547)
167 TIGR00237 xseA exodeoxyribonuc 38.8 1.6E+02 0.0034 32.7 9.2 95 86-217 126-224 (432)
168 COG1570 XseA Exonuclease VII, 38.8 1.9E+02 0.0041 32.3 9.6 96 86-218 132-231 (440)
169 PRK14021 bifunctional shikimat 38.4 75 0.0016 36.2 6.8 52 168-222 251-305 (542)
170 cd00537 MTHFR Methylenetetrahy 38.2 72 0.0016 32.7 6.2 92 122-219 29-137 (274)
171 PRK04155 chaperone protein Hch 38.0 2.4E+02 0.0053 29.5 10.1 40 172-211 134-181 (287)
172 cd02038 FleN-like FleN is a me 37.7 3.1E+02 0.0068 24.8 10.4 70 190-295 8-77 (139)
173 TIGR00288 conserved hypothetic 37.5 35 0.00076 32.8 3.4 53 171-226 90-145 (160)
174 PRK10014 DNA-binding transcrip 37.2 4.6E+02 0.01 26.8 12.1 89 87-218 62-150 (342)
175 PRK05637 anthranilate synthase 36.9 58 0.0013 32.3 5.0 52 179-245 40-91 (208)
176 PRK03910 D-cysteine desulfhydr 36.7 3.2E+02 0.0069 28.8 10.9 51 172-224 52-102 (331)
177 cd02042 ParA ParA and ParB of 36.7 2.6E+02 0.0056 23.6 9.0 64 191-295 9-72 (104)
178 cd01574 PBP1_LacI Ligand-bindi 36.2 4.1E+02 0.0089 25.8 11.1 85 91-218 1-85 (264)
179 PF04263 TPK_catalytic: Thiami 35.9 1E+02 0.0023 28.1 6.1 90 122-216 17-121 (123)
180 PLN02735 carbamoyl-phosphate s 35.9 3.3E+02 0.0071 34.1 12.2 101 86-209 571-676 (1102)
181 COG1609 PurR Transcriptional r 35.6 62 0.0014 34.2 5.3 66 88-191 57-122 (333)
182 PRK10703 DNA-binding transcrip 35.6 5.1E+02 0.011 26.6 12.9 71 88-196 58-128 (341)
183 smart00729 Elp3 Elongator prot 35.0 2.1E+02 0.0045 26.6 8.4 45 168-212 134-182 (216)
184 PLN02958 diacylglycerol kinase 34.8 84 0.0018 35.3 6.4 111 111-228 101-215 (481)
185 COG2910 Putative NADH-flavin r 34.7 99 0.0022 30.9 6.0 95 90-198 1-111 (211)
186 PRK07591 threonine synthase; V 34.7 1.2E+02 0.0026 33.4 7.5 145 173-332 126-286 (421)
187 CHL00101 trpG anthranilate syn 34.2 47 0.001 32.3 3.8 51 179-244 39-89 (190)
188 PRK12767 carbamoyl phosphate s 34.1 3.8E+02 0.0082 27.6 10.9 43 168-211 54-96 (326)
189 cd06278 PBP1_LacI_like_2 Ligan 34.1 3.1E+02 0.0066 26.6 9.7 97 92-238 2-98 (266)
190 cd06275 PBP1_PurR Ligand-bindi 33.6 77 0.0017 31.1 5.4 67 91-195 1-67 (269)
191 PRK05294 carB carbamoyl phosph 33.3 3.1E+02 0.0068 34.0 11.5 48 171-224 617-666 (1066)
192 smart00046 DAGKc Diacylglycero 33.1 92 0.002 28.0 5.3 42 183-227 49-93 (124)
193 PF02569 Pantoate_ligase: Pant 32.9 63 0.0014 33.9 4.7 41 251-291 13-54 (280)
194 PF00731 AIRC: AIR carboxylase 32.9 53 0.0012 31.3 3.8 49 167-221 39-87 (150)
195 PF02645 DegV: Uncharacterised 32.2 5.7E+02 0.012 26.2 12.4 172 141-330 41-234 (280)
196 PLN02821 1-hydroxy-2-methyl-2- 31.9 83 0.0018 35.2 5.6 53 170-223 349-401 (460)
197 PRK06774 para-aminobenzoate sy 31.7 44 0.00095 32.3 3.2 51 179-244 39-89 (191)
198 PRK01045 ispH 4-hydroxy-3-meth 31.6 49 0.0011 35.0 3.6 80 170-251 198-279 (298)
199 cd06273 PBP1_GntR_like_1 This 31.6 2.4E+02 0.0051 27.6 8.5 43 170-218 42-84 (268)
200 cd01542 PBP1_TreR_like Ligand- 31.3 2.9E+02 0.0063 26.8 9.0 83 92-218 2-84 (259)
201 PF04405 ScdA_N: Domain of Unk 31.1 51 0.0011 26.1 2.8 28 171-200 11-38 (56)
202 PRK13371 4-hydroxy-3-methylbut 31.0 95 0.0021 34.1 5.8 55 170-225 275-329 (387)
203 TIGR01378 thi_PPkinase thiamin 30.9 1.4E+02 0.003 29.5 6.6 80 123-205 20-113 (203)
204 PRK03359 putative electron tra 30.8 1.2E+02 0.0026 31.3 6.3 53 174-227 71-128 (256)
205 cd06267 PBP1_LacI_sugar_bindin 30.8 2.5E+02 0.0053 26.9 8.3 84 91-218 1-84 (264)
206 TIGR00215 lpxB lipid-A-disacch 30.7 69 0.0015 34.6 4.8 137 94-255 8-146 (385)
207 PRK12815 carB carbamoyl phosph 30.1 2.9E+02 0.0063 34.3 10.4 96 86-204 4-104 (1068)
208 KOG3857 Alcohol dehydrogenase, 30.1 1.1E+02 0.0025 33.1 6.0 38 168-205 112-149 (465)
209 PRK10355 xylF D-xylose transpo 29.9 6.6E+02 0.014 26.2 13.7 94 88-223 24-117 (330)
210 PRK00286 xseA exodeoxyribonucl 29.7 2.4E+02 0.0051 31.1 8.8 101 86-223 132-236 (438)
211 PF01936 NYN: NYN domain; Int 29.1 37 0.00079 30.6 2.0 49 174-225 86-134 (146)
212 cd06323 PBP1_ribose_binding Pe 28.8 5.4E+02 0.012 24.9 14.1 86 91-218 1-86 (268)
213 PRK02261 methylaspartate mutas 28.3 4E+02 0.0087 24.6 8.8 115 89-221 3-121 (137)
214 PLN02735 carbamoyl-phosphate s 28.2 2.7E+02 0.0059 34.7 9.8 107 84-219 18-135 (1102)
215 cd06353 PBP1_BmpA_Med_like Per 28.1 6.4E+02 0.014 25.5 11.2 122 87-257 118-239 (258)
216 cd06167 LabA_like LabA_like pr 27.9 1.1E+02 0.0024 27.8 5.0 50 173-225 89-138 (149)
217 TIGR03127 RuMP_HxlB 6-phospho 27.9 4.6E+02 0.01 24.6 9.5 59 168-230 16-74 (179)
218 TIGR00732 dprA DNA protecting 27.8 4.3E+02 0.0094 26.5 9.6 35 184-224 156-193 (220)
219 cd06307 PBP1_uncharacterized_s 27.1 2.5E+02 0.0054 27.7 7.8 43 171-218 47-89 (275)
220 TIGR00676 fadh2 5,10-methylene 27.1 92 0.002 32.1 4.7 91 123-219 30-134 (272)
221 cd06312 PBP1_ABC_sugar_binding 26.7 5.9E+02 0.013 25.0 10.4 87 91-218 1-88 (271)
222 PRK00139 murE UDP-N-acetylmura 26.7 8.3E+02 0.018 26.9 12.5 127 170-311 78-214 (460)
223 TIGR02810 agaZ_gatZ D-tagatose 26.7 9.3E+02 0.02 26.9 15.0 140 90-265 11-168 (420)
224 PLN02335 anthranilate synthase 26.3 80 0.0017 31.6 4.0 50 180-244 59-108 (222)
225 PRK10423 transcriptional repre 26.3 6.9E+02 0.015 25.3 11.5 70 88-195 55-124 (327)
226 cd01536 PBP1_ABC_sugar_binding 26.1 5.9E+02 0.013 24.4 13.4 86 91-218 1-86 (267)
227 TIGR00640 acid_CoA_mut_C methy 26.1 1.7E+02 0.0037 26.9 5.9 48 147-195 46-94 (132)
228 PRK12390 1-aminocyclopropane-1 26.0 4.6E+02 0.01 27.7 9.9 44 172-216 55-98 (337)
229 COG0763 LpxB Lipid A disacchar 26.0 1.1E+02 0.0024 33.5 5.1 109 90-217 2-116 (381)
230 KOG1342 Histone deacetylase co 25.8 1.1E+02 0.0024 33.5 5.0 70 155-231 261-332 (425)
231 KOG4435 Predicted lipid kinase 25.7 1.3E+02 0.0027 33.3 5.5 53 168-223 102-154 (535)
232 smart00870 Asparaginase Aspara 25.7 1.5E+02 0.0034 31.4 6.2 50 168-218 58-111 (323)
233 cd03822 GT1_ecORF704_like This 25.5 5.2E+02 0.011 25.9 10.0 84 91-192 1-85 (366)
234 cd06319 PBP1_ABC_sugar_binding 25.4 4.6E+02 0.0099 25.7 9.3 27 91-117 1-27 (277)
235 cd06301 PBP1_rhizopine_binding 25.4 6.4E+02 0.014 24.6 13.5 88 91-219 1-88 (272)
236 PLN02327 CTP synthase 25.2 76 0.0016 36.4 3.9 69 170-258 351-421 (557)
237 cd01539 PBP1_GGBP Periplasmic 25.0 7.3E+02 0.016 25.1 11.3 47 168-218 42-88 (303)
238 KOG2998 Uncharacterized conser 24.9 2.5E+02 0.0054 29.8 7.3 73 375-463 186-262 (302)
239 TIGR02417 fruct_sucro_rep D-fr 24.9 1.4E+02 0.0029 30.7 5.6 69 88-194 59-127 (327)
240 TIGR02637 RhaS rhamnose ABC tr 24.6 4.1E+02 0.0088 26.8 9.0 87 92-218 1-87 (302)
241 cd06302 PBP1_LsrB_Quorum_Sensi 24.4 7.4E+02 0.016 25.0 13.6 87 91-218 1-87 (298)
242 cd06292 PBP1_LacI_like_10 Liga 24.3 2.7E+02 0.0059 27.3 7.5 88 91-219 1-90 (273)
243 TIGR01916 F420_cofE F420-0:gam 24.0 2.4E+02 0.0051 29.1 6.9 56 260-327 89-148 (243)
244 PRK13293 F420-0--gamma-glutamy 23.9 1.2E+02 0.0026 31.3 4.7 57 259-327 89-149 (245)
245 PRK09864 putative peptidase; P 23.7 3.6E+02 0.0078 29.2 8.6 86 153-251 247-341 (356)
246 cd00411 Asparaginase Asparagin 23.6 1.5E+02 0.0032 31.5 5.6 49 168-218 61-111 (323)
247 TIGR00176 mobB molybdopterin-g 23.6 1.9E+02 0.0041 27.2 5.8 48 187-241 2-51 (155)
248 TIGR01133 murG undecaprenyldip 23.1 6.6E+02 0.014 25.7 10.3 37 185-221 2-39 (348)
249 PRK15395 methyl-galactoside AB 23.0 7.8E+02 0.017 25.5 10.9 93 87-220 22-114 (330)
250 TIGR01769 GGGP geranylgeranylg 22.9 2.3E+02 0.0049 28.4 6.4 53 170-224 11-65 (205)
251 PF00532 Peripla_BP_1: Peripla 22.9 1.8E+02 0.0039 29.7 6.0 91 90-225 2-92 (279)
252 PF10087 DUF2325: Uncharacteri 22.9 3.8E+02 0.0083 22.9 7.2 26 254-283 70-95 (97)
253 PRK08007 para-aminobenzoate sy 22.8 87 0.0019 30.4 3.4 53 178-245 38-90 (187)
254 COG0685 MetF 5,10-methylenetet 22.8 1.8E+02 0.0039 30.5 5.9 70 139-210 60-140 (291)
255 cd06295 PBP1_CelR Ligand bindi 22.7 3.3E+02 0.0072 26.8 7.7 44 173-222 54-97 (275)
256 cd06317 PBP1_ABC_sugar_binding 22.7 5.5E+02 0.012 25.0 9.3 85 92-218 2-87 (275)
257 PF07085 DRTGG: DRTGG domain; 22.6 1.2E+02 0.0026 26.3 4.0 44 172-220 50-93 (105)
258 TIGR00423 radical SAM domain p 22.5 8.5E+02 0.018 25.3 11.1 205 94-311 56-295 (309)
259 TIGR00216 ispH_lytB (E)-4-hydr 22.4 1.5E+02 0.0033 31.1 5.3 52 170-223 196-247 (280)
260 COG0129 IlvD Dihydroxyacid deh 22.4 2.3E+02 0.0049 32.8 7.0 113 87-220 40-153 (575)
261 PRK06027 purU formyltetrahydro 22.1 3.1E+02 0.0068 28.6 7.6 121 56-202 62-183 (286)
262 cd01391 Periplasmic_Binding_Pr 22.1 3.1E+02 0.0067 25.7 7.1 48 170-221 168-219 (269)
263 cd06277 PBP1_LacI_like_1 Ligan 22.1 2.2E+02 0.0048 27.9 6.3 41 171-218 46-86 (268)
264 PRK12360 4-hydroxy-3-methylbut 22.0 69 0.0015 33.6 2.7 54 170-225 197-250 (281)
265 PRK14476 nitrogenase molybdenu 22.0 7.7E+02 0.017 27.4 11.1 19 97-115 139-157 (455)
266 COG0482 TrmU Predicted tRNA(5- 21.9 4.9E+02 0.011 28.4 9.0 68 88-189 2-69 (356)
267 cd06271 PBP1_AglR_RafR_like Li 21.8 1.8E+02 0.0039 28.3 5.6 42 171-218 47-88 (268)
268 PTZ00063 histone deacetylase; 21.7 1.9E+02 0.0041 32.3 6.1 72 153-230 257-331 (436)
269 KOG4180 Predicted kinase [Gene 21.4 44 0.00096 35.7 1.1 72 140-219 45-136 (395)
270 COG1979 Uncharacterized oxidor 21.1 1.2E+02 0.0027 32.7 4.3 37 169-205 71-107 (384)
271 PRK14974 cell division protein 21.0 4.1E+02 0.0088 28.6 8.3 26 186-211 142-169 (336)
272 PF00186 DHFR_1: Dihydrofolate 21.0 82 0.0018 30.1 2.8 53 171-231 79-131 (161)
273 TIGR00542 hxl6Piso_put hexulos 20.8 8.8E+02 0.019 24.5 11.7 50 169-218 15-73 (279)
274 cd06564 GH20_DspB_LnbB-like Gl 20.8 6.6E+02 0.014 26.4 9.9 35 234-269 133-170 (326)
275 TIGR01085 murE UDP-N-acetylmur 20.7 6.9E+02 0.015 27.5 10.4 129 169-312 67-208 (464)
276 PRK03910 D-cysteine desulfhydr 20.7 1.6E+02 0.0035 31.0 5.2 36 183-220 183-218 (331)
277 cd02072 Glm_B12_BD B12 binding 20.6 2.3E+02 0.005 26.3 5.5 48 146-194 42-90 (128)
278 PHA02518 ParA-like protein; Pr 20.5 7.3E+02 0.016 23.4 10.8 92 191-296 10-110 (211)
279 cd06296 PBP1_CatR_like Ligand- 20.4 4.5E+02 0.0098 25.6 8.1 44 170-219 42-85 (270)
280 TIGR02432 lysidine_TilS_N tRNA 20.3 1.4E+02 0.0031 28.4 4.3 32 187-218 4-35 (189)
281 PRK07649 para-aminobenzoate/an 20.2 94 0.002 30.4 3.1 51 179-244 39-89 (195)
282 cd02036 MinD Bacterial cell di 20.2 6.4E+02 0.014 23.0 8.7 86 191-295 9-95 (179)
283 cd06268 PBP1_ABC_transporter_L 20.2 7.9E+02 0.017 23.7 11.5 139 91-265 1-141 (298)
284 cd06284 PBP1_LacI_like_6 Ligan 20.2 4.7E+02 0.01 25.2 8.2 83 92-219 2-84 (267)
285 PRK04183 glutamyl-tRNA(Gln) am 20.2 2.6E+02 0.0055 31.1 6.7 70 168-247 134-206 (419)
286 COG0504 PyrG CTP synthase (UTP 20.1 1E+02 0.0022 34.9 3.5 115 137-272 295-420 (533)
No 1
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=100.00 E-value=2.5e-155 Score=1270.84 Aligned_cols=547 Identities=83% Similarity=1.318 Sum_probs=530.8
Q ss_pred CCCCCcccCCHhhhhhcCCCCCCccccccccceecCCCCCCCCChhHHHhhCCcccCCCeeEEecCCcccccCCCCCcEE
Q 042388 13 GPGRLASVYSELQTSRLNVSLPLPSVLKKTFNVVDGAPSSASGNPEEIKKLFPKLFGQPSARLVECDPKACSMENKSLKI 92 (567)
Q Consensus 13 ~~~~~~~~~s~l~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~p~~~~~~~~~~~~~~~~~~~~I 92 (567)
...++.+.+|+||++|+.|+|+||++|++++++.+++++.++.++++|+++|||||++|.++|+++.+ .......++||
T Consensus 21 ~~~~~~~~~s~~q~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~-~~~~~~~~~~I 99 (568)
T PLN02251 21 ASGRDASVYSEVQSSRIDHALPLPSVLKGPFKIVDGPPSSAAGNPEEIAKLFPNLFGQPSVMLVPSQA-DALSSDQKLKI 99 (568)
T ss_pred hhhhhhhccCHHHHHHHhCCCCCChhhcCceEEEecCcccccCCHHHHHHhChHhhCCceEEEeeccC-ccccccccceE
Confidence 45667778999999999999999999999999999999999999999999999999999999998531 12223566899
Q ss_pred EEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChHHH
Q 042388 93 GVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPEQF 172 (567)
Q Consensus 93 gIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e~~ 172 (567)
||||||||||||||||+|++++++..+++++||||++||.||+++++++||++.++.|+|+|||++|||+|+++++++++
T Consensus 100 GIv~sGG~APG~nnvI~Gv~~~a~~~~~~~~vyG~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~dlLGS~R~k~~~~e~~ 179 (568)
T PLN02251 100 GVVLSGGQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGIMKCKYVELTAEFIYPYRNQGGFDMICSGRDKIETPEQF 179 (568)
T ss_pred EEECcCCCchhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHhhhhhhCCCceEecccCCCcCCHHHH
Confidence 99999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHHHHHHH
Q 042388 173 KQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVM 252 (567)
Q Consensus 173 ~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~ni~ 252 (567)
++++++|++++||+||+|||||||++|+.|+|||+++|++|+||||||||||||+++|+|+|||||||+++++++|+||+
T Consensus 180 ~~~~~~l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~k~~a~~I~ni~ 259 (568)
T PLN02251 180 KQAEETATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYSEMIGNVM 259 (568)
T ss_pred HHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEeCCCC
Q 042388 253 TDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVILIPEGLI 332 (567)
Q Consensus 253 ~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~EGl~ 332 (567)
+||.|++|||||||+|||+||||||+||||||||+|||||++++++++|++|++.||+.|++|+.+|++|||||||||++
T Consensus 260 ~da~S~~k~~~~VevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~~L~~I~~~I~~~I~~R~~~gk~~gvIlVsEGli 339 (568)
T PLN02251 260 IDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKLTLKNVTDYIVDVICKRAELGYNYGVILIPEGLI 339 (568)
T ss_pred HHHHhhCCEEEEEEeCCCchHHHHHHHHHhhCCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHHHHHHH
Q 042388 333 DFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIETEKMLIQMVETEL 412 (567)
Q Consensus 333 ~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~lV~~~L 412 (567)
+||||++.||+|+|++++++..++++.+.++||+|++++|++||.+||+||+.+||+|||+|+++|+||++|++||+++|
T Consensus 340 e~ipe~~~li~el~~~l~~~~~~~~~~~~~~ls~~~~~lf~~lP~~i~~qll~~rD~~G~~qls~Iete~lL~~lV~~~L 419 (568)
T PLN02251 340 DFIPEVQHLIAELNEILAHDVVDEEGHWKKKLKPQSLQLFDFLPHAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETEL 419 (568)
T ss_pred hhCchHHHHHHHHHHHhhhcccccchhhhhhCCHHHHHHHHhCcHHHHHHhccccCCCCCeeecccHHHHHHHHHHHHHH
Confidence 99999999999999999998888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEeccchHhHH
Q 042388 413 NKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGNLGEPVEEWTVGGTALTSLM 492 (567)
Q Consensus 413 ~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~l~~~~~~w~~~~vPL~~~~ 492 (567)
++|+.+|+|+++|++++|+|||+|||+.||+||++|||+||+.|+.++.+|+||||++|+|++.++++|+++++||++||
T Consensus 420 ~~rk~~~~~~~~f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~li~~G~tGyM~~I~nl~~~~~~w~~~~vpl~~~m 499 (568)
T PLN02251 420 EKRKQEGSYKGHFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVGGTALTSLM 499 (568)
T ss_pred hhhccccccccccceeEEecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEcCCCCcceeEEcCccHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcccccchhhhccCCchhHHHHHhhccccccCceeCCccccccCCCCCCCcceeEecCCCc
Q 042388 493 DVERRHGKFKPVIKKAMVELEGIPFKTFASLREDWTIKNLYVSPGPIQFVGPNANDINHTLKLELGPP 560 (567)
Q Consensus 493 ~~e~~~g~~~p~i~~~~v~l~~~~f~~~~~~r~~w~~~d~y~~pGpiq~~g~~~~~~~~tl~~e~~~~ 560 (567)
|+||++|+.+|||+|++|||+|++|++|+++|++|+++|+||+||||||+||.+|++++||.||++.+
T Consensus 500 n~e~~~~~~~pvi~k~~v~l~g~~f~~~~~~r~~w~~~d~y~~pgpiQ~~g~~~~~~~~tl~~e~~~~ 567 (568)
T PLN02251 500 DVERRHGKFKPVIKKAMVELEGAPFKKFASLRDEWALKNRYISPGPIQFSGPGSDATNHTLKLELGAQ 567 (568)
T ss_pred hhhhhCCCcCccccccccCCCCHHHHHHHHHHHHhhhcCcCcCCCCccccCcccCCCceEEEecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999765
No 2
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=100.00 E-value=3.1e-150 Score=1228.43 Aligned_cols=535 Identities=72% Similarity=1.199 Sum_probs=516.9
Q ss_pred cCCHhhhhhcCCCCCCcccccc---ccceecCCCCCCCCChhHHHhhCCcccCCCeeEEecCCcccccCCCCCcEEEEEe
Q 042388 20 VYSELQTSRLNVSLPLPSVLKK---TFNVVDGAPSSASGNPEEIKKLFPKLFGQPSARLVECDPKACSMENKSLKIGVVL 96 (567)
Q Consensus 20 ~~s~l~~~r~~~~p~lp~~l~~---~~~~~~~~~~~~~~~~~~i~~~fp~~~~~p~~~~~~~~~~~~~~~~~~~~IgIv~ 96 (567)
+.|+||++|+.|+|+||++|++ .+++.+++++++..++++|+++|||||++|+++|++... ......++||||++
T Consensus 2 ~~s~~~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~~~~~p~~~~~~~~~--~~~~~~~~~IgIl~ 79 (550)
T cd00765 2 VYSLVQQERINYTPKLPSVLKGDFNNIKIVEGPATSAAGDPDALAKLFPGTYGQPSVAFVPDQD--APSSAPKLKIGIVL 79 (550)
T ss_pred CccHHHHHHHhcCCCCChhhcCCccceEEeecCcccccCCHHHHHHhChhhhCCcceEEeecCC--cccCCCCCEEEEEC
Confidence 4689999999999999999988 579999999999999999999999999999999999642 23335669999999
Q ss_pred cCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChHHHHHHH
Q 042388 97 SGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPEQFKQAE 176 (567)
Q Consensus 97 sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e~~~~~~ 176 (567)
|||||||+||||+|+++++++.+++++||||++||.||+++++++||++.++.|+|+|||++|||+|+++.+++++++++
T Consensus 80 SGG~aPGiNnvI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~i~Lt~~~v~~~~~~GGsd~LGs~R~k~~~~e~~~~i~ 159 (550)
T cd00765 80 SGGQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCDYIELNAEYIQPYRNTGGFDMICSGRTKIETEDQFKQAE 159 (550)
T ss_pred CCCCcHhHHHHHHHHHHHHHHhcCCcEEEEEccCHHHhcCCCeEECCHHHHhHHHhCCChhhhcCcCCCCCCHHHHHHHH
Confidence 99999999999999999998888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHh
Q 042388 177 ETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDAR 256 (567)
Q Consensus 177 ~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~ni~~da~ 256 (567)
++|++++||+||+|||||||++|++|+|||+++|++++||||||||||||+++++|+|||||||+++++++|+||++|+.
T Consensus 160 ~~l~~~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GFdTA~k~~a~~I~ni~~Da~ 239 (550)
T cd00765 160 ETAKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKIYSELIGNVMRDAR 239 (550)
T ss_pred HHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred hcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCch
Q 042388 257 STGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVILIPEGLIDFIP 336 (567)
Q Consensus 257 S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~EGl~~~ip 336 (567)
|+++||||||+|||+||||||+||||||||+|||||++++++++|++|+++||+.|++|+.+|++|||||||||+++|||
T Consensus 240 s~~~~~~~VEvMGR~aG~LAl~~aLat~p~lilIpE~~~~~~~~L~~v~~~I~~~i~~r~~~gk~~gvIvVsEGlie~ip 319 (550)
T cd00765 240 STGKYWHFVKLMGRSASHIALECALKTHPNICIISEEVSAQKQTLKNITDYMVDVICKRAELGYNFGVVLVPEGLIEFIP 319 (550)
T ss_pred HcCCcEEEEEeCCCchHHHHHHHHHhcCCCEEEecCcccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCchhhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhch---------HHHHHHhhhcCCCCCCcccchhhhHHHHHHH
Q 042388 337 EVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFP---------KAIQEQLLLERDPHGNVQVAKIETEKMLIQM 407 (567)
Q Consensus 337 e~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp---------~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~l 407 (567)
||+.||+|+|++++++..+.++.+.++|++|++++|.+|| ++|++||+.+||+|||+|+++|+||++|++|
T Consensus 320 e~~~Li~el~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~g~~f~~lp~~i~~ql~~~~D~~G~~qls~iete~lL~~l 399 (550)
T cd00765 320 EVKELIAELNEILANEVVEFNGLWKKKLTEQSLKLFDLLPKGVYLPLFIEAIQEQLMLERDPHGNVQVSRIETEKLLIQM 399 (550)
T ss_pred hHHHHHHHHHHHhhhcccchhhhhhhcccHHHHHhhhccccccccccchHHHHHHhhcccCCCCCEeeccchHHHHHHHH
Confidence 9999999999999887766666788899999999987777 9999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEeccc
Q 042388 408 VETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGNLGEPVEEWTVGGTA 487 (567)
Q Consensus 408 V~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~l~~~~~~w~~~~vP 487 (567)
|+++|++|+..|+|+++|+.++|+|||+|||+.||+||++|||+||+.|++++.+|.||||++|+|++.++++|+++++|
T Consensus 400 V~~~L~~~k~~g~y~~~f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~~~~g~tGyM~~I~~l~~~~~~w~~~~vP 479 (550)
T cd00765 400 VETRLEKMKQAGAYKGQFMGQSHFFGYEGRCAFPSNFDADYCYALGYGAGVLLNSGKTGYISSVGNLAAPVEEWTVGGVP 479 (550)
T ss_pred HHHHHHHhhhcccccccccceeeecCcchhccCCcHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCceEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHhcCCcccccchhhhccCCchhHHHHHhhccccccCceeCCccccccCCCC--CCCcceeEec
Q 042388 488 LTSLMDVERRHGKFKPVIKKAMVELEGIPFKTFASLREDWTIKNLYVSPGPIQFVGPNA--NDINHTLKLE 556 (567)
Q Consensus 488 L~~~~~~e~~~g~~~p~i~~~~v~l~~~~f~~~~~~r~~w~~~d~y~~pGpiq~~g~~~--~~~~~tl~~e 556 (567)
|++|||+|++.|+.+|||+|++|||+|++|++|+++|++|+++|+||+||||||+||.+ |++++||.||
T Consensus 480 l~~~mn~e~~~g~~~pvi~~~~v~l~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~~~tl~~e 550 (550)
T cd00765 480 LTMLMNMERRHGKFKPVIKKALVDLEGAPFKKFASLREEWALKNRYIYPGPVQYTGPSEGSDELSHTLLLE 550 (550)
T ss_pred HHHHhccccccCCcceecccceeCCCCHHHHHHHHHHHHHhhcCcccCCCCeeccCccccccCCceeeecC
Confidence 99999999999999999999999999999999999999999999999999999999977 9999999997
No 3
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=1e-149 Score=1234.87 Aligned_cols=539 Identities=43% Similarity=0.708 Sum_probs=513.5
Q ss_pred ccCCHhhhhhcCCCCCCcccccc-ccceecCCCCCCCCCh--hHHHhhCCcccCCCeeEEecCCc--cccc--CCCCCcE
Q 042388 19 SVYSELQTSRLNVSLPLPSVLKK-TFNVVDGAPSSASGNP--EEIKKLFPKLFGQPSARLVECDP--KACS--MENKSLK 91 (567)
Q Consensus 19 ~~~s~l~~~r~~~~p~lp~~l~~-~~~~~~~~~~~~~~~~--~~i~~~fp~~~~~p~~~~~~~~~--~~~~--~~~~~~~ 91 (567)
.++|+||+.|+.|+|+||++|++ .+++++++++++..++ ++|+++|||||++|+++|.++.. .... .....+|
T Consensus 2 ~~~s~~q~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~p~~~~~~~~~~~~~~~~~~~~~~~r 81 (610)
T PLN03028 2 RELSGLQKLRSLYQPELPPCLQGTTVRVELGDATTAADPADAHAISRAFPHTYGQPLAHFLRATAKVPDAQVITEHPAVR 81 (610)
T ss_pred CCCCHHHHHHHhCCCCCChhhCCCcEEEeeCCCccccCcccHHHHHHhChhhhCCcceEEecccccCccccccCCCcccE
Confidence 47899999999999999999988 5889999999888766 99999999999999999998431 1111 2345589
Q ss_pred EEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChHH
Q 042388 92 IGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPEQ 171 (567)
Q Consensus 92 IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e~ 171 (567)
||||+||||||||||||+|++++++..+++++||||++||.||+++++++||++.++.|+|+|||++|||+|.++.++++
T Consensus 82 IgIv~sGG~APG~nnvI~Gvv~~~~~~~~~~~V~G~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~~iLGSsR~~l~~~e~ 161 (610)
T PLN03028 82 VGVVFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFLGGTEGLFAQKTLEITDDVLSTYKNQGGYDLLGRTKDQIRTTEQ 161 (610)
T ss_pred EEEEccCCCCccHHHHHHHHHHHHHHhCCCcEEEEEccCHHHhcCCCeEECCHHHHHHHHhcCCchhccCcCCCcCCHHH
Confidence 99999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHHHHHH
Q 042388 172 FKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNV 251 (567)
Q Consensus 172 ~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~ni 251 (567)
+++++++|++++||+||+||||||+++|++|+|||++++++++||||||||||||+++.+|+|||||||+++++++|+||
T Consensus 162 ~~~i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKTIDNDL~~~~td~s~GFdTA~k~~ae~I~ni 241 (610)
T PLN03028 162 VNAALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNV 241 (610)
T ss_pred HHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEeceeeeCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999877889999999999999999999
Q ss_pred HHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Q 042388 252 MTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVILIPEGL 331 (567)
Q Consensus 252 ~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~EGl 331 (567)
++||.|+++||||||+|||+||||||+||||||||+||||||+..+++||.+|++.|++.|++|+++|++|||||||||+
T Consensus 242 ~~dA~S~~~~~~~VevMGR~aG~LAl~~aLat~pniilI~EE~~~~~~tL~~iv~~i~~~I~~r~~~gk~~gvIvVsEGl 321 (610)
T PLN03028 242 CTDALSAEKYYYFIRLMGRKASHVALECALQSHPNMVILGEEVAASKLTLFDITKQICDAVQARAEQDKNHGVILIPEGL 321 (610)
T ss_pred HHHHHhhCCeEEEEEeCCcchHHHHHHHHHhcCCCEEEecCcccccccccchHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHHHHHH
Q 042388 332 IDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIETEKMLIQMVETE 411 (567)
Q Consensus 332 ~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~lV~~~ 411 (567)
+++||||+.||+|+|+++.++... ..+.++||+|+++||++||++||+||+.+||+|||+|+++|+||++|++||+++
T Consensus 322 ie~ipe~~~li~el~~~~~~g~~~--~~~~~~ls~~~~~l~~~lP~~i~~qLl~~~D~~G~~qls~i~te~lL~~lV~~e 399 (610)
T PLN03028 322 IESIPEVYALLQEIHGLLKQGVSV--DNISSQLSPWASALFEFLPPFIKKQLLLHPESDDSAQLSQIETEKLLAQLVETE 399 (610)
T ss_pred cccCchHHHHHHHHHHHHhcCcch--hhhhhhcCHHHHHHHhhccHHHHHHHhhccCCCCCeeecchhHHHHHHHHHHHH
Confidence 999999999999999999655322 235678999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCcCc-ccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEeccchHh
Q 042388 412 LNKMKQKGAYKG-QFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGNLGEPVEEWTVGGTALTS 490 (567)
Q Consensus 412 L~~r~~~~~y~~-~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~l~~~~~~w~~~~vPL~~ 490 (567)
|++|+++|+|++ +|++++|+|||+|||+.||+||++|||+||+.|+.++.+|+||||++|+|++.++++|+++++||++
T Consensus 400 L~~r~~~g~~~~~~f~~~~h~~GYe~R~~~PS~fD~~yay~LG~~A~~l~~~G~tG~M~~I~nl~~~~~~w~~~~vPl~~ 479 (610)
T PLN03028 400 MNKRTKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKSPVNKWRCGAAPITA 479 (610)
T ss_pred HHHHhhccccccccccccccccChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCeEEEEcccCHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc------CCcccccchhhhccCCchhHHHHHhhccccccCceeCCccccccCCCCCCCcceeEecCCC
Q 042388 491 LMDVERRH------GKFKPVIKKAMVELEGIPFKTFASLREDWTIKNLYVSPGPIQFVGPNANDINHTLKLELGP 559 (567)
Q Consensus 491 ~~~~e~~~------g~~~p~i~~~~v~l~~~~f~~~~~~r~~w~~~d~y~~pGpiq~~g~~~~~~~~tl~~e~~~ 559 (567)
|||+|||+ |+.+|+|+|++|||+|++|++|+++|++|+++|+|++||||||+||.+|++++||.+|++.
T Consensus 480 ~m~~~~~~~~~~~~~~~~p~i~~~~v~l~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~tl~~e~~~ 554 (610)
T PLN03028 480 MMSVKRWSRGPGASQIGKPAIHPAPVDLKGKAYELLRQNASSFLMDDLYRNPGPLQFDGPGADAKPITLCVEDQD 554 (610)
T ss_pred HhhHHhhcccccccccCCceeeccccCCCcHHHHHHHHHHHHhhccCcCcCCCCccccCCcccCCceEeehhhhh
Confidence 99999997 7889999999999999999999999999999999999999999999999999999999966
No 4
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=5.3e-148 Score=1214.83 Aligned_cols=537 Identities=56% Similarity=0.929 Sum_probs=515.2
Q ss_pred cCCHhhhhhcCCCCCCcccccc---ccceecCCCCCCCCChhHHHhhCCcccCCCeeEEecCCcccccCCCCCcEEEEEe
Q 042388 20 VYSELQTSRLNVSLPLPSVLKK---TFNVVDGAPSSASGNPEEIKKLFPKLFGQPSARLVECDPKACSMENKSLKIGVVL 96 (567)
Q Consensus 20 ~~s~l~~~r~~~~p~lp~~l~~---~~~~~~~~~~~~~~~~~~i~~~fp~~~~~p~~~~~~~~~~~~~~~~~~~~IgIv~ 96 (567)
++|+||++|+.|+|+||++|++ .++++++++++++.++++|+++|||||++|.++|+++. .....++||||++
T Consensus 2 ~~s~~~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~----~~~~~~~~IgIl~ 77 (555)
T PRK07085 2 NKSYLQLARLKYRPKLPKLLQNDPGLIKIVDGEFTESVADQDELAELFPNTYGLPYVTFVKGS----ESSSKPLKVGVIL 77 (555)
T ss_pred CcCHHHHHHHhCCCCCCHHHhCCCCCceEeecCCccccCCHHHHHHhChHhhCCccEEEEeCC----CCcccceEEEEEC
Confidence 5799999999999999999976 58899999999999999999999999999999999974 2334579999999
Q ss_pred cCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChHHHHHHH
Q 042388 97 SGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPEQFKQAE 176 (567)
Q Consensus 97 sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e~~~~~~ 176 (567)
||||||||||||+|+++++++.+++++||||++||.||+++++++||++.++.|+|+|||++|||+|+++.+++++++++
T Consensus 78 sGG~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~~i~ 157 (555)
T PRK07085 78 SGGQAPGGHNVIAGLFDGLKKLNPDSKLFGFIGGPLGLLNGKYIEITEEVIDEYRNTGGFDMIGSGRTKIETEEQKEACL 157 (555)
T ss_pred CCCCChHHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCeEECCHHHHhHHHhCCChhhhcCCCCCCCCHHHHHHHH
Confidence 99999999999999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHh
Q 042388 177 ETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDAR 256 (567)
Q Consensus 177 ~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~ni~~da~ 256 (567)
++|++++||+||+||||||+++|+.|+|||++++++|+||||||||||||+++.+|+|||||||+++++++|+||++||.
T Consensus 158 ~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTIDNDl~~~~id~s~GFdTA~~~~~~~I~~i~~Da~ 237 (555)
T PRK07085 158 ETVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTATKTYSEMIGNISRDAL 237 (555)
T ss_pred HHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeecCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred hcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCch
Q 042388 257 STGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVILIPEGLIDFIP 336 (567)
Q Consensus 257 S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~EGl~~~ip 336 (567)
|+++||||||+|||+||||||+||||||||+|||||++++++++|++|+++|++.|++|+.+|++|||||||||+++|||
T Consensus 238 s~~~~~~~VevMGR~aG~LAl~~aLat~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gvIvvsEGlie~ip 317 (555)
T PRK07085 238 SAKKYWHFIKLMGRSASHIALECALQTHPNICLISEEVAEKKMSLQDIVHYIASVIADRAAKGKNYGVILIPEGLIEFIP 317 (555)
T ss_pred hcCCcEEEEEECCCChHHHHHHHHHhcCCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCchhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCcC-------C-CcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHHH
Q 042388 337 EVQQLIAELNEILAHDGVD-------Q-DGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIETEKMLIQMV 408 (567)
Q Consensus 337 e~~~li~el~~~~~~~~~~-------~-~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~lV 408 (567)
||+.||+|||+++++.... . ...+.++||+|+++||.+||.+||+||+.+||+|||+|+++|+||++|++||
T Consensus 318 e~~~li~el~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~~s~~l~~~lp~~i~~qLl~~rD~~Gn~~ls~i~te~lL~~lV 397 (555)
T PRK07085 318 EMKSLIKELNSLLAENESEFKGLDTEAQREYIISKLSPESAKLFKSLPEDIARQLLLDRDPHGNVQVSKIETEKLLIEMV 397 (555)
T ss_pred hHHHHHHHHHHhhhhcccccccccchhhhhhhhhhcCHHHHHHHhhcchhhhhhhccCcCCCCCeeeccccHHHHHHHHH
Confidence 9999999999998654211 1 1236788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEeccch
Q 042388 409 ETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGNLGEPVEEWTVGGTAL 488 (567)
Q Consensus 409 ~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~l~~~~~~w~~~~vPL 488 (567)
+++|++|+.+|+|+++|++++|+|||+|||+.||+||++|||+||+.|++++++|+||||++|+|+..++++|++.++||
T Consensus 398 ~~~l~~~k~~g~y~~~f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~~~~~G~tG~m~~i~~l~~~~~~w~~~~vPl 477 (555)
T PRK07085 398 KKELEKLKPEGKYKGPFSAISHFFGYEGRSAFPSNFDADYCYALGYTAALLILNGKTGYMSTIKNLTSPYTEWIAGAVPL 477 (555)
T ss_pred HHHHHHhhcccccccceeeeeecCChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCcceeeEecccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHhcCCcccccchhhhccCCchhHHHHHhhccccccCceeCCccccccCCCC--CCCcceeEecCCCc
Q 042388 489 TSLMDVERRHGKFKPVIKKAMVELEGIPFKTFASLREDWTIKNLYVSPGPIQFVGPNA--NDINHTLKLELGPP 560 (567)
Q Consensus 489 ~~~~~~e~~~g~~~p~i~~~~v~l~~~~f~~~~~~r~~w~~~d~y~~pGpiq~~g~~~--~~~~~tl~~e~~~~ 560 (567)
++|||+|+++|+.+|+|+|++|||+|++|++|+++|++|+++|+||+||||||+||.+ |++++||.||++..
T Consensus 478 ~~~~n~e~~~g~~~p~i~~~~Vdl~~~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~~~tl~~e~~~~ 551 (555)
T PRK07085 478 TMMMNMERRHGKEKPVIKKALVDLDGPPFKYFAKYRDIWALEDSYRFPGPLQYFGPEELCDQRTLTLLLELNKN 551 (555)
T ss_pred HHHhcHHhhCCCCCceeeeeeeCCCCHHHHHHHHHHHHHhhcCcccCCCCeeecCccccccCCCceEEecCCCc
Confidence 9999999999999999999999999999999999999999999999999999999977 99999999999653
No 5
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=100.00 E-value=3.4e-147 Score=1206.32 Aligned_cols=532 Identities=61% Similarity=1.015 Sum_probs=510.5
Q ss_pred hhhhhcCCCCCCcccccc---ccceecCCCCCCCCChhHHHhhCCcccCCCeeEEecCCcccccCCCCCcEEEEEecCCC
Q 042388 24 LQTSRLNVSLPLPSVLKK---TFNVVDGAPSSASGNPEEIKKLFPKLFGQPSARLVECDPKACSMENKSLKIGVVLSGGQ 100 (567)
Q Consensus 24 l~~~r~~~~p~lp~~l~~---~~~~~~~~~~~~~~~~~~i~~~fp~~~~~p~~~~~~~~~~~~~~~~~~~~IgIv~sGG~ 100 (567)
||+.|+.|+|+||++|++ .+++..++++.+..++++|+++|||||++|+++|.++.+ ..+...++||||++||||
T Consensus 1 ~q~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~--~~~~~~~~rIgIl~sGG~ 78 (539)
T TIGR02477 1 LQQSRLQYVPKLPKVLQGDTANISLEDGEPTAAVADQEELKELFPNTYGLPIITFEPGEA--SPDEHQPLKIGVILSGGQ 78 (539)
T ss_pred CchhHhhCCCCCChHHcCCCcceEEeccCcccCCCCHHHHHHhChHhhCCccEEEecCCC--CcccccceEEEEECCCCC
Confidence 699999999999999987 578899999999999999999999999999999998752 223456789999999999
Q ss_pred CchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChHHHHHHHHHHH
Q 042388 101 APGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAK 180 (567)
Q Consensus 101 aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e~~~~~~~~l~ 180 (567)
||||||||+|++++++..+++++||||++||+||+++++++||++.++.|+|+|||++|||+|+++.+++++++++++|+
T Consensus 79 aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~~~~~~l~ 158 (539)
T TIGR02477 79 APGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLDNNYVELTKELIDTYRNTGGFDIIGSGRTKIETEEQFAKALTTAK 158 (539)
T ss_pred ChHHHHHHHHHHHHHHHhCCCcEEEEEecChHHhcCCCeEeCCHHHHhHHHhCCCchhhcCCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998889999999999999999999999999999999999998899999999989999999999999
Q ss_pred HcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhhcCC
Q 042388 181 KLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDARSTGK 260 (567)
Q Consensus 181 ~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~ni~~da~S~~k 260 (567)
+++||+||+||||||+++|+.|+|||+++|++|+||||||||||||++..+|+|||||||+++++++|+||++|+.|+++
T Consensus 159 ~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~~~~td~s~GFdTA~~~~~~~I~~i~~Da~s~~~ 238 (539)
T TIGR02477 159 KLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKIYSELIGNICRDALSAKK 238 (539)
T ss_pred HcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999867778999999999999999999999999999
Q ss_pred eeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCchHHHH
Q 042388 261 YYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVILIPEGLIDFIPEVQQ 340 (567)
Q Consensus 261 ~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~EGl~~~ipe~~~ 340 (567)
||||||+|||+||||||+||||||||+|||||++++++++|++|+++|++.|++|+.+|++|||||||||+++||||++.
T Consensus 239 ~~~~VevMGR~aG~LAl~~aLat~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gvIvvsEGlie~ipe~~~ 318 (539)
T TIGR02477 239 YWHFIRLMGRSASHIALECALQTHPNVCIIGEEVAAKKMTLSQLTDYIADVIVKRAAKGKNFGVILIPEGLIEFIPEVQA 318 (539)
T ss_pred cEEEEEECCCCcHHHHHHHHHhcCCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCchhhcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCcCC--CcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHHHHHHHHHhhhc
Q 042388 341 LIAELNEILAHDGVDQ--DGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIETEKMLIQMVETELNKMKQK 418 (567)
Q Consensus 341 li~el~~~~~~~~~~~--~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~lV~~~L~~r~~~ 418 (567)
||+|+|++++++.... ...+.++||+|+++||.+||.+|++||+.+||+|||+|+++|+||++|++||+++|++|+++
T Consensus 319 Li~el~~~l~~~~~~~~~~~~i~~~ls~~s~~l~~~lp~~i~~qLl~~~D~~G~~~ls~i~te~lL~~lV~~~l~~~~~~ 398 (539)
T TIGR02477 319 LIKELNNLLAQNVLEEGRKDNVQSKLSPSSKALFESLPEFIRHQLLLDRDPHGNVQVSQIETEKLLIELVQTELNKRKKE 398 (539)
T ss_pred HHHHHHhhhhcccccchhhhhhhhhcCHhHHHHHhhcchhHHHhhccCcCCCCCeeeccccHHHHHHHHHHHHHHhhhcc
Confidence 9999999997664331 12366899999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEeccchHhHHHHHHhc
Q 042388 419 GAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGNLGEPVEEWTVGGTALTSLMDVERRH 498 (567)
Q Consensus 419 ~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~l~~~~~~w~~~~vPL~~~~~~e~~~ 498 (567)
|+|+++|..++|+|||+|||+.||+||++|||+||+.|++++++|+||||++|+|++.++++|++.++||++|||+|+++
T Consensus 399 ~~~k~~f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~~~~G~tG~m~~i~~l~~~~~~w~~~~vPl~~~~n~e~~~ 478 (539)
T TIGR02477 399 GEYKGKFSAVSHFFGYEGRCAFPSNFDSDYCYALGYTAAILLANGLTGYMSTIKNLTNPAEEWIAGGVPLTMMMNMERRH 478 (539)
T ss_pred ccceeEEeecccccCcccccCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCcceeeEecccHHHHhChhhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccchhhhccCCchhHHHHHhhccccccCceeCCccccccCCCC--CCCcceeEecC
Q 042388 499 GKFKPVIKKAMVELEGIPFKTFASLREDWTIKNLYVSPGPIQFVGPNA--NDINHTLKLEL 557 (567)
Q Consensus 499 g~~~p~i~~~~v~l~~~~f~~~~~~r~~w~~~d~y~~pGpiq~~g~~~--~~~~~tl~~e~ 557 (567)
|+.+|+|+|++|||+|++|++|+++|++|+++|+||+||||||+||.+ |++++||.||+
T Consensus 479 g~~~p~i~~~~Vdl~~~~f~~~~~~r~~w~~~d~y~~pgpiQ~~g~~~~~~~~~~tl~~e~ 539 (539)
T TIGR02477 479 GEMKPVIKKALVDLEGKPFKKFASNRDKWALEDLYVFPGPIQYFGPEEVCDQPTLTLLLEQ 539 (539)
T ss_pred CCCCccceeeeeCCCCHHHHHHHHHHHHHhhcCcccCCCCeeecCccccccCCceEEEecC
Confidence 999999999999999999999999999999999999999999999995 99999999995
No 6
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=2.9e-139 Score=1200.73 Aligned_cols=533 Identities=45% Similarity=0.776 Sum_probs=505.3
Q ss_pred ccCCHhhhhhcCCCCCCccccccccceecCCCCCCCCCh--hHHHhhCCcccCCCeeEEecCCcc-cccCCCCCcEEEEE
Q 042388 19 SVYSELQTSRLNVSLPLPSVLKKTFNVVDGAPSSASGNP--EEIKKLFPKLFGQPSARLVECDPK-ACSMENKSLKIGVV 95 (567)
Q Consensus 19 ~~~s~l~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~--~~i~~~fp~~~~~p~~~~~~~~~~-~~~~~~~~~~IgIv 95 (567)
...|+||++|+.|+|+||++|++.+++++++++++..++ ++|+++||+||++|+++|+++... ........+|||||
T Consensus 29 ~~~s~~q~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~i~~~fp~t~~~p~~~~~~~~~~~~~~~~~~~krIGIL 108 (1328)
T PTZ00468 29 EGQSNMQMWRRRWEPCLPHILRSPLSIKEVSAFEGMGKMERSDVSSYFPLTSGNSLVKFEAISDGSSSWKKFPARRIGVV 108 (1328)
T ss_pred cCcCHHHHHHHhcCCCCChHhcCceEEeecCCcccccCcchHHHHHhCccccCCcceEEeecCCCccccccccCCEEEEE
Confidence 346999999999999999999999999999999988777 999999999999999999985310 11122245899999
Q ss_pred ecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChHHHHHH
Q 042388 96 LSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPEQFKQA 175 (567)
Q Consensus 96 ~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e~~~~~ 175 (567)
|||||||||||||+|++++++..+++++||||++||.||+++++++|+++.++.|+|+|||++|||+|.++.++++++++
T Consensus 109 tSGGdAPG~NnvI~gv~~~l~~~~~~~~VyGf~~G~~GLl~~~~ieLt~~~V~~i~n~GGt~iLGS~R~kl~~ee~~~~~ 188 (1328)
T PTZ00468 109 LSGGQASGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVYSERYRELTEDDINGILNQGGFNIICSGRHKIETEEQMRAS 188 (1328)
T ss_pred CcCCCchhHHHHHHHHHHHHHHhcCCCEEEEEccChHHhcCCCeEeCCHHHHHHHHhCCCcccccCcCCCCCCHHHHHHH
Confidence 99999999999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHH
Q 042388 176 EETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDA 255 (567)
Q Consensus 176 ~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~ni~~da 255 (567)
+++|++++||+||+||||||+++|++|+|||.++|++++||||||||||||+++.+|+|||||||+++++++|++++.||
T Consensus 189 le~lkkl~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTIDNDL~g~~tD~S~GFdTA~k~iae~I~nl~~~A 268 (1328)
T PTZ00468 189 LEICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKTYSEQIGSIMDAI 268 (1328)
T ss_pred HHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEcCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999878889999999999999999999999
Q ss_pred hhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCc
Q 042388 256 RSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVILIPEGLIDFI 335 (567)
Q Consensus 256 ~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~EGl~~~i 335 (567)
.|+++||||||+|||+||||||+|||||+||+|||||++++++++|++|+++|++.|.+|+++|++|||||||||+++||
T Consensus 269 ~S~~~rv~~VEVMGR~AGhLAL~~ALAtganiiLIPEe~~~k~~tL~dIvd~Iv~~I~kR~~~Gk~ygIIvVsEGliefI 348 (1328)
T PTZ00468 269 KTEGYGYYFVRLMGRSASHITLECGLQTRANMILIGEEIKEENRSLMSIVDEIVEMILKRDSLGKKHGIVLLPEGLIEFI 348 (1328)
T ss_pred hhcCCeEEEEEeCCcchHHHHHHHHHhcCCCEEEecCcCccchhhhhHHHHHHHHHHHHHHHcCCCcEEEEEcCCccccc
Confidence 99888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhcCCcCCCcc-hhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHHHHHHHHH
Q 042388 336 PEVQQLIAELNEILAHDGVDQDGA-WKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIETEKMLIQMVETELNK 414 (567)
Q Consensus 336 pe~~~li~el~~~~~~~~~~~~g~-~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~lV~~~L~~ 414 (567)
||++.||+|||++++++ .++. +.++||+|++++|++||++|++||+.+||+|||+|+++|+||++|++||+++|++
T Consensus 349 pe~~~Li~eln~~l~~~---~~g~~i~~~Ls~~~~~lf~~lP~~i~~qLl~~rD~hGnvqls~I~tEklLa~lV~~~L~~ 425 (1328)
T PTZ00468 349 PEFETLIKELNLILLKT---NDRKQIIDSLSQEMKTLFLELPSDVQNQLLLERDPHGNVQVAKIATEELLVHMAKEKLEE 425 (1328)
T ss_pred cHHHHHHHHHHHhhccc---cchhhhhhhcCHHHHHHHHhCcHHHHHHhccccCCCCCEeeccccHHHHHHHHHHHHHHH
Confidence 99999999999999664 3444 6679999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEeccchHhHHHH
Q 042388 415 MKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGNLGEPVEEWTVGGTALTSLMDV 494 (567)
Q Consensus 415 r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~l~~~~~~w~~~~vPL~~~~~~ 494 (567)
|+.+ |. +|.+++|+|||+|||+.||+||++|||+||+.|++++.+|+||||++|+|++.++++|+++++||++|||+
T Consensus 426 ~~~~--~~-~f~~k~HflGYE~RCa~PS~FD~~yayaLG~~Av~l~~~G~TGyMatI~nl~~~~~~W~~~~vPL~~mmn~ 502 (1328)
T PTZ00468 426 VKKD--YI-LDNVKTHYFGYEGRCALPSNFDASYCFALGHTAAALIDNQRSGYMAVVRKLSLTPEQWEPAGCPLTYMMNI 502 (1328)
T ss_pred hhcc--cc-cCCceEeecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCceEEEEccccHHHHhhH
Confidence 9765 55 78899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcccccchhhhccCCchhHHHHHhhccccccCceeCCccccccCCCCCCCcceeEecC
Q 042388 495 ERRHGKFKPVIKKAMVELEGIPFKTFASLREDWTIKNLYVSPGPIQFVGPNANDINHTLKLEL 557 (567)
Q Consensus 495 e~~~g~~~p~i~~~~v~l~~~~f~~~~~~r~~w~~~d~y~~pGpiq~~g~~~~~~~~tl~~e~ 557 (567)
|+|+|+.+|||+|++|||+|++|++|+++|++|+++|+||+||||||+||.++.+++++....
T Consensus 503 E~r~g~~~pvI~k~~V~l~g~~f~~~~~~r~~w~~~d~Y~~pGPiQ~~gp~~~~~~~~~~~~~ 565 (1328)
T PTZ00468 503 ELRKGKSVPVIKKYLVDLKGQSYLAYCQVRSEWKLNDYYRNPGPIQFDGPNSGITNYMISPPR 565 (1328)
T ss_pred HhhCCCccceeeecccCCCcHHHHHHHHHHHHhhhcCcccCCCCeeeccCcccCcceeccCch
Confidence 999999999999999999999999999999999999999999999999999999888876544
No 7
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=3.9e-136 Score=1181.99 Aligned_cols=541 Identities=37% Similarity=0.608 Sum_probs=492.0
Q ss_pred CCcccCCHhhhhhcCCCCCCccccccc-cceecCCC--CCCCCChhHHHhhCCcccCCCeeEEecCC-cccccCCCCCcE
Q 042388 16 RLASVYSELQTSRLNVSLPLPSVLKKT-FNVVDGAP--SSASGNPEEIKKLFPKLFGQPSARLVECD-PKACSMENKSLK 91 (567)
Q Consensus 16 ~~~~~~s~l~~~r~~~~p~lp~~l~~~-~~~~~~~~--~~~~~~~~~i~~~fp~~~~~p~~~~~~~~-~~~~~~~~~~~~ 91 (567)
+..+++|++|..|..++|++|.++... ..++.... +.....++++...|||+.....+.+.... .+.....+..+|
T Consensus 759 ~~~~~~s~~~~~r~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~r 838 (1419)
T PTZ00287 759 KSLGCMSELQTSRLYNKLELPELCSDLKAKVRAGKQYISNDPYTQKQILSNYPHMSYENKFQIQEIFHDKYATPISFEIK 838 (1419)
T ss_pred hhhccccHHhhhccccCccchhhhhhhHhhcccceeeecCChhhhhhhhhcccchhhhhhhhHhhhhccccccCCcCCcE
Confidence 567789999999999999999988432 23332211 11234578999999998876555332211 112334457799
Q ss_pred EEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCC-CCCChH
Q 042388 92 IGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRD-KIETPE 170 (567)
Q Consensus 92 IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~-k~~~~e 170 (567)
|||||||||||||||||+|++++++..+ +. ++||. ||.||+++++++||.++++.|+|+|||+++||+|. ++.++|
T Consensus 839 IGVLtSGGdAPG~NnVIrgvv~~a~~~~-g~-~~gf~-G~~GLl~~~~i~Lt~~~V~~i~n~GGtiLlgssR~~~f~t~e 915 (1419)
T PTZ00287 839 IGIVFLSRQAPGAMNVLCGLYRRLKLLK-GV-CIAFY-GLYGLLNNKYIIIDDDNIAKHVNQGGLELTGNSPEHSLFDKE 915 (1419)
T ss_pred EEEECcCCCcHhHHHHHHHHHHHHHHhC-Ce-EEEEe-CchhhcCCCeEECCHHHHhhHHHcCCeeecCCcCCCCCCCHH
Confidence 9999999999999999999999986543 44 57766 99999999999999999999999999977799994 588999
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHHHHH
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGN 250 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~n 250 (567)
++++++++|++++||+||+||||||+++|+.|+|||+++|++++||||||||||||++..+|+|||||||+++++++|+|
T Consensus 916 ~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv~~~seaI~n 995 (1419)
T PTZ00287 916 NRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTKVYASLIGN 995 (1419)
T ss_pred HHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999996677899999999999999999
Q ss_pred HHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Q 042388 251 VMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVILIPEG 330 (567)
Q Consensus 251 i~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~EG 330 (567)
|++||.|++|||||||||||+||||||+||||||||+|||||++..+++||++|+++||+.|++|+++||+|||||||||
T Consensus 996 L~~dA~S~~ry~~fVEVMGR~aGhLALe~aLatgAniiLIPEe~~~~~~tL~~Iid~I~~~I~~R~~~GK~ygIVlV~EG 1075 (1419)
T PTZ00287 996 VLTDAVSMPKYWHFIRLMGRSPSHEVLECALQTHPNMVIISEEYGAADKTLWRVVQDIADVVCARAELGKNYGTVLIPDA 1075 (1419)
T ss_pred HHHHHHhcCCcEEEEEECCCchHHHHHHHHHhcCCCEEEecCcccccccchhHHHHHHHHHHHHHHHcCCCcEEEEEcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHhhhcC----C----------------------------cCC---CcchhhhcchhhHHHHhhc
Q 042388 331 LIDFIPEVQQLIAELNEILAHD----G----------------------------VDQ---DGAWKKKLKSQSQELFELF 375 (567)
Q Consensus 331 l~~~ipe~~~li~el~~~~~~~----~----------------------------~~~---~g~~~~~ls~~~~~lf~~l 375 (567)
|++|||||+.||+|||+++++. . .+. ...+.++||||+++||++|
T Consensus 1076 Lie~Ipe~k~Li~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lsp~s~~lf~sl 1155 (1419)
T PTZ00287 1076 LLMHLPHMKILLSEISDILNDANEKGQLVEARNDLVNLSTTQHGHLGSTAGTVAGAEQPLSASPWVSKLTPWSLALLKTF 1155 (1419)
T ss_pred HHHhCHHHHHHHHHHHHHHHhhhhcccccccccchhhccccccccccccccccccccccchhhHHHhhCCHHHHHHHHhc
Confidence 9999999999999999998641 0 000 1237789999999999999
Q ss_pred hHHHHHHhhhcCCCCCCcccchhhhHHHHHHHHHHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHH
Q 042388 376 PKAIQEQLLLERDPHGNVQVAKIETEKMLIQMVETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYA 455 (567)
Q Consensus 376 p~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~ 455 (567)
|.+||+||+ +||+ ||+|+|+||||+||++||+++|++|+++|+|+|+|++++||||||+||+.||+|||+|||+||+.
T Consensus 1156 P~~i~~qLl-~rD~-gn~~vs~IeTE~LL~~mV~~eL~~rk~~g~y~g~F~~~~HffGYegR~~~PS~FD~~y~Y~LG~~ 1233 (1419)
T PTZ00287 1156 PQFIIKELL-HVDL-RSMRFEKLETEQLLLQMVKEELHQRKQKGKYSGSFMGLTHFFGYQGRSSLPSEFDCKLAYSYGHA 1233 (1419)
T ss_pred cHHHHHHHh-ccCC-CCcccccchHHHHHHHHHHHHHHHHHhcCccccccceeeeccccccccCCCCccchHHHHHHHHH
Confidence 999999998 9999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCceEEEEecCCCCccceEEeccchHhHHHHHHhc----------CCcccccchhhhccCCchhHHHHHhhc
Q 042388 456 AAALLHAGKTGLISSVGNLGEPVEEWTVGGTALTSLMDVERRH----------GKFKPVIKKAMVELEGIPFKTFASLRE 525 (567)
Q Consensus 456 Av~li~~g~tG~mv~i~~l~~~~~~w~~~~vPL~~~~~~e~~~----------g~~~p~i~~~~v~l~~~~f~~~~~~r~ 525 (567)
|+.++.+|+||||++|+|+..++++|+++++||++||++|+|+ |+.+|||+|++|||+|+||+.|+++|+
T Consensus 1234 A~~li~~g~tGym~~i~nl~~~~~~W~~~giPlt~mm~ve~r~~~~k~~~~~~g~~~pvI~k~~Vdl~g~~fk~~~~~r~ 1313 (1419)
T PTZ00287 1234 ASIVIESGLTGYIVSIRGLCGNIKDWKLFAIPFISLMKILPRGQGSKYLKSASKGDLPVIPSAPVDLNGKAYRSLKIALQ 1313 (1419)
T ss_pred HHHHHhCCCeEEEEEecCccCCHHHeEEccchhhhhhchhhhccccccccccccCccccccccccCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997 789999999999999999999999999
Q ss_pred cccccCceeCCccccccCCCCCCCcceeEecCCCchhhhh
Q 042388 526 DWTIKNLYVSPGPIQFVGPNANDINHTLKLELGPPAQAKL 565 (567)
Q Consensus 526 ~w~~~d~y~~pGpiq~~g~~~~~~~~tl~~e~~~~~~~~~ 565 (567)
+|+++|+|++||||||+||.+|++++||.+|+ .+|.
T Consensus 1314 ~W~~~d~y~~PGPiQ~~g~~~~~~~~tL~~e~----~~y~ 1349 (1419)
T PTZ00287 1314 KWQMEDRFCNPGPIQFEGNASNYYNRILFEEQ----SEYF 1349 (1419)
T ss_pred hhhhcCcCCCCCCccccCccccCcCeeeeHhH----HHHH
Confidence 99999999999999999999999999999999 6665
No 8
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=1.2e-134 Score=1169.52 Aligned_cols=536 Identities=43% Similarity=0.752 Sum_probs=505.3
Q ss_pred CcccCCHhhhhhcCCCCCCccccccccc---eecCCCCCCCCChhHHHhhCCcccCCCeeEEecCCcccccCCCCCcEEE
Q 042388 17 LASVYSELQTSRLNVSLPLPSVLKKTFN---VVDGAPSSASGNPEEIKKLFPKLFGQPSARLVECDPKACSMENKSLKIG 93 (567)
Q Consensus 17 ~~~~~s~l~~~r~~~~p~lp~~l~~~~~---~~~~~~~~~~~~~~~i~~~fp~~~~~p~~~~~~~~~~~~~~~~~~~~Ig 93 (567)
...+.|+||++|+.|+|+||++|++.++ +.+++++.+..+.+++.++||++++.|.++|.+...........++|||
T Consensus 102 l~~~~s~~q~~r~~~~p~lp~~l~~~~~~~~~~~g~~~~~~~d~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~rIg 181 (1419)
T PTZ00287 102 LNDDLSPLQYERIKYQPTLPKALASEYQILEENHGDDFINKKDYEEVKRFLKNLHNLPILNVKETNNHESFKGGNVLKIG 181 (1419)
T ss_pred hhcccCHHHHHHHhcCCCCchhhccccccceeccCcccccccCHHHHHHHHHHhhcCceeeecCCCccccccccCceEEE
Confidence 4456799999999999999999998888 7889999999999999999999999999999875311112224458999
Q ss_pred EEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChHHHH
Q 042388 94 VVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPEQFK 173 (567)
Q Consensus 94 Iv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e~~~ 173 (567)
|++||||||||||||+|++++++..+++++||||++||.||+++++++||+++++.|+|+|||++|||||.++.++++++
T Consensus 182 Il~SGGpAPGmNavI~Gvv~~a~~~~~g~~VyG~~~G~~GLl~~~~veLt~~~V~~~~n~GGs~iLGSgR~k~~~~e~~~ 261 (1419)
T PTZ00287 182 IILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSKNYVTITDSLMNRFRNLGGFNMLWSGRGKVRNKDDLI 261 (1419)
T ss_pred EEccCCCcHhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHHhhHHhCCChhHhhCCCCCCCCHHHHH
Confidence 99999999999999999999998778899999999999999999999999999999999999989999999998899999
Q ss_pred HHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHHHHHHHH
Q 042388 174 QAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMT 253 (567)
Q Consensus 174 ~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~ni~~ 253 (567)
+++++|++++||+|||||||||+++|++|+||+.+.+++++||||||||||||+++.+|+|||||||+++++++|+|++.
T Consensus 262 ki~e~lkkl~Id~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIPKTIDNDL~~~gTD~S~GFDTA~n~iae~I~ni~~ 341 (1419)
T PTZ00287 262 AIENIVAKLKLNGLVIIGGDGSNSNAALISEYFAERQIPISIIGIPKTIDGDLKSEAIEISFGFDTATKTYSEVIGNLCT 341 (1419)
T ss_pred HHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEeeeecCCCCCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999976667899999999999999999999
Q ss_pred HHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEeCCCCC
Q 042388 254 DARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVILIPEGLID 333 (567)
Q Consensus 254 da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~EGl~~ 333 (567)
|+.|++++|||||||||+|||||++||||++||+|||||++++++++|++|++.|++.|.+|+..|++|||||||||+++
T Consensus 342 D~~Ss~~~~~VVEVMGR~AG~LAl~~aLAtgAdlilIPEe~~~~~~~L~dI~~~Iv~~I~kR~~~gk~~gVIvVsEGlie 421 (1419)
T PTZ00287 342 DVKTGHNVYHVVRVMGRSASHVVLECALQTRPNIVLIGEEVEKENLSLKDIVSNIVNTILKRRSLNKNYGVILIPEGLIE 421 (1419)
T ss_pred HHHHhCCeEEEEEECCCcchHHHHHHHHhcCCCEEEecCcccccCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHHHHHHHH
Q 042388 334 FIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIETEKMLIQMVETELN 413 (567)
Q Consensus 334 ~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~lV~~~L~ 413 (567)
||||++.||+|||++++++..+ .++++ |++++|.+||..+++||+++||+|||+|+++|+||++|++||+++|+
T Consensus 422 ~Ipe~~~Li~eln~~l~~g~~~-----~~~~~-~~~~~f~~LP~~i~~qLl~~rD~~Ghvqls~i~te~lL~~~V~~~L~ 495 (1419)
T PTZ00287 422 FVPEMKILIGELNVILKEGPFD-----ASKLK-HSREVWDFLPSIIRDQLLMDRESTGYIQVGKIATERLIIVLVESELA 495 (1419)
T ss_pred hcchHHHHHHHhhhhcccCcch-----hhhhh-hhhhhhhhccHHHHhhhhcccCCCCCEeccccchHHHHHHHHHHHHH
Confidence 9999999999999999765322 23455 89999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEeccchHhHHH
Q 042388 414 KMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGNLGEPVEEWTVGGTALTSLMD 493 (567)
Q Consensus 414 ~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~l~~~~~~w~~~~vPL~~~~~ 493 (567)
++++++. +|++++|+|||+|||+.||+||++|||+||+.|+.++.+|.||||++|+|++.++|+|+++++||++||+
T Consensus 496 ~~~~~g~---~~k~~~h~lGYe~RcA~PS~fD~~yay~LG~~Av~l~~~G~tG~Mv~I~nl~~~~~~w~~~~vPl~~~m~ 572 (1419)
T PTZ00287 496 KLNDNNL---NIQFMAHYLGYEGRCAIPSNFDCNYCYALGYNAALLIDHKKTGYMSIIQNLEDSYANWIPAAIPFLRIMH 572 (1419)
T ss_pred HHHhcCC---CeeEEEeecCcchhccCCcHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCcceeEEcccCHHHHhh
Confidence 9987663 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc-CCcccccchhhhccCCchhHHHHHhhccccccCceeCCccccccCCCCCCCcceeEecCCCch
Q 042388 494 VERRH-GKFKPVIKKAMVELEGIPFKTFASLREDWTIKNLYVSPGPIQFVGPNANDINHTLKLELGPPA 561 (567)
Q Consensus 494 ~e~~~-g~~~p~i~~~~v~l~~~~f~~~~~~r~~w~~~d~y~~pGpiq~~g~~~~~~~~tl~~e~~~~~ 561 (567)
+|+|+ |+.+|||+|++|||+|++|++|+++|++|+++|+||+||||||+||.+|++++||.+|....+
T Consensus 573 ~e~~~~g~~~pvi~k~~v~l~g~~f~~~~~~r~~w~~~d~Y~~pGpiQ~~g~~~d~~~~tl~~e~~~~~ 641 (1419)
T PTZ00287 573 VNRDNTGKEFPAVKRYLVDLNSPLFNVLKEVRSLWSLYDLYRSPGPIQFNGHLSNSRCYTVKIPTKDNL 641 (1419)
T ss_pred HHhhccCCCceeEEeeeeCCCCHHHHHHHHHHHHhhhcccccCCCCeeccccccCCCceeeeccchhhh
Confidence 99998 999999999999999999999999999999999999999999999999999999999985443
No 9
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=5e-123 Score=1066.50 Aligned_cols=533 Identities=24% Similarity=0.383 Sum_probs=470.1
Q ss_pred CCcccCCHhhhhhcCCCCCCccccccc-cceecCCCCC-C--CCChhHHHhhCCcccCC---CeeEEecCC--------c
Q 042388 16 RLASVYSELQTSRLNVSLPLPSVLKKT-FNVVDGAPSS-A--SGNPEEIKKLFPKLFGQ---PSARLVECD--------P 80 (567)
Q Consensus 16 ~~~~~~s~l~~~r~~~~p~lp~~l~~~-~~~~~~~~~~-~--~~~~~~i~~~fp~~~~~---p~~~~~~~~--------~ 80 (567)
+...++|+||..|.+|+|++|.+|... .+....-..+ + .....+|.+.||+...+ ..+++.... .
T Consensus 581 ~~~~~~s~l~~~r~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 660 (1328)
T PTZ00468 581 THKLCGSELSQNRCKDDLKIPKILLSTASKFNDDLIISSSCRDLDAYIITKCLPHQTGRHNSKTLQLREEEYSSPFTEIR 660 (1328)
T ss_pred hcccccchhhhhhhcCCCCCchhhhhhhcccchhhcccCchHHHHHHHHHhhCcHhhhcccCcceEEEeccccCchhhcc
Confidence 556889999999999999999999654 2221111111 1 24456888899998776 444444432 0
Q ss_pred c-c--cc---CCCCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCE--EEcC----ccccc
Q 042388 81 K-A--CS---MENKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKY--VELS----TEYIY 148 (567)
Q Consensus 81 ~-~--~~---~~~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~--~eLt----~~~v~ 148 (567)
+ . .. +....++||||+.||||||+||||+|++.++. +.+ |+||++|+.||+++++ +.|| .++++
T Consensus 661 ~~~~~~~~~~~~~~~~~vgIv~~g~~aPG~NnVI~g~~~~~~--~~g--vig~~~G~~~L~~~~~~~v~l~~~~~~~~~~ 736 (1328)
T PTZ00468 661 ESSSSKSSVGNSLACESLGLILSCLSTPGTQNVICGLVNGLP--SLK--QLIVFKSLSDFYEGKALKVDLTSEGSLEFFE 736 (1328)
T ss_pred ccccCcccccccccceeEEEEecCCCCccHHHHHHHHHHHHH--hCC--cEEEEechhHHhcCCceEEecccchhHHHHH
Confidence 0 0 00 11245899999999999999999999999865 333 9999999999999975 4555 36899
Q ss_pred cccccCCccccccc----------CCCCCCh-----H---------------HHHHHHHHHHHcCCCEEEEecCchhHHH
Q 042388 149 PYRNQGGFDMICSG----------RDKIETP-----E---------------QFKQAEETAKKLDLDGLVVIGGDDSNTN 198 (567)
Q Consensus 149 ~~~n~GG~~~LGS~----------R~k~~~~-----e---------------~~~~~~~~l~~~~id~LViIGGddS~t~ 198 (567)
.++|+||+ +++++ |+.+.+. + +.+.+.++|++++||+||+||||||+++
T Consensus 737 ~~~n~GG~-~~~~~~~~~~~~~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~Id~LVvIGGDgS~t~ 815 (1328)
T PTZ00468 737 NSLNSGGC-IFPNGVEIKMNVSEKKYSNTTLKANDNQEFTNSSCVLSCKGLVSNDFLSQLLSFFNMRAIAIVGNSEAATF 815 (1328)
T ss_pred HHHhcCCe-eeeccccccccccccccCccccccccchhccccccccccccchhHHHHHHHHHHcCCCEEEEeCCchHHHH
Confidence 99999998 77777 6544222 3 4588999999999999999999999999
Q ss_pred HHHHHHHHhcCC-----CCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCc
Q 042388 199 ACLLAENFRSKD-----MKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDARSTGKYYHFVRLMGRAAS 273 (567)
Q Consensus 199 A~~Lae~~~~~g-----~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~ni~~da~S~~k~~~fVevMGR~ag 273 (567)
|+.|+|+|.+++ .+++||||||||||||+++++|+|||||||+++++++|+|+++|++|+++||||||+|||+||
T Consensus 816 A~~Lae~~~~~~~~~~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~~~~se~Ign~l~Dtass~kr~~fVevMGR~ag 895 (1328)
T PTZ00468 816 GASLSEQLICMSLNGMKSEIPVVFVPVCLENSISHQMIETCIGFDSVTKSISTLVGNLLTDSASATKYWYFMKMIGDKTS 895 (1328)
T ss_pred HHHHHHHHhhhccccccCCCcEEEeCccccCCCCCCCccccccHHhHHHHHHHHHHHHHHHHHhcCCcEEEEEECCcChH
Confidence 999999998865 579999999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCcEEEECCcchhh----------hcchHhHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCch---HHHH
Q 042388 274 HITLECALQTHPNITIIGEEVAAK----------KQTLKNVTDYITDIICKRSEAGYNYGVILIPEGLIDFIP---EVQQ 340 (567)
Q Consensus 274 ~LAL~~aLat~pnivlIpEe~~~~----------~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~EGl~~~ip---e~~~ 340 (567)
||||+||||||||+|||||++.++ ++||++|+++||+.|++|+++||+|||||||||+++||| |++.
T Consensus 896 ~LAL~~gLatganivlIpEe~~~~~~~~~~~~~~~~tL~~ii~~I~~~I~~R~~~Gk~ygvIlIsEGlie~ip~~~e~~~ 975 (1328)
T PTZ00468 896 NVALEVGIQTHPNLVVIPERYADSKLSVYGSEMAGVTLDDIITEICDIICLRSNQGNNFGGLLVSEGLFDQVYPTREYRK 975 (1328)
T ss_pred HHHHHHHHhhCCCEEEecCcccccccccccccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEcCChHHhCCCHHHHHH
Confidence 999999999999999999998654 689999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHhhhcCCcCC------CcchhhhcchhhHHH---HhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHHHHHH
Q 042388 341 LIAELNEILAHDGVDQ------DGAWKKKLKSQSQEL---FELFPKAIQEQLLLERDPHGNVQVAKIETEKMLIQMVETE 411 (567)
Q Consensus 341 li~el~~~~~~~~~~~------~g~~~~~ls~~~~~l---f~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~lV~~~ 411 (567)
||.| +++++..+. ...+.++||+|++++ |.+||.+|++||+++|| ||+|||+||||++|++||+++
T Consensus 976 li~e---~~a~~~~~~~~~~~~~~~~~~~Ls~~~~~~~~~f~~lp~~i~~qL~~~~d--gn~~vs~IeTE~lL~~lV~~e 1050 (1328)
T PTZ00468 976 IFSR---FSTQNLCNASNSGNCEILGSESLSRYEKKVVEDFKLIFSDIDERLIENLI--NSRKICDVRTEIILSALVQKE 1050 (1328)
T ss_pred HHHH---HhhhccccccchhhhhhhhhccCCHHHHHHHHHHHhhhHHHHHHHHhccC--CCcchhhhhHHHHHHHHHHHH
Confidence 9998 344333221 123667999999999 99999999999999999 999999999999999999999
Q ss_pred HHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC-CceEEEEecCCCCccceEEeccchHh
Q 042388 412 LNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGK-TGLISSVGNLGEPVEEWTVGGTALTS 490 (567)
Q Consensus 412 L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~-tG~mv~i~~l~~~~~~w~~~~vPL~~ 490 (567)
|++|+++|+|+++|++++|||||++||+.||+|||+|||+||+.|+.++.+|. ||||++|+|++.|+++|.++++||++
T Consensus 1051 l~~rk~~g~y~g~f~~~~HffGYegR~~~Ps~FD~~y~y~lG~~A~~li~~g~~~Gym~~i~nl~~~~~~W~~~~iPlt~ 1130 (1328)
T PTZ00468 1051 LKFRRSKNKIKNGMNPVCFSFTDQVRACIPSDFDSTLGLMYGMLASKIINSNLVGGYVTGIKGVLSQIDSWNMYAIPISS 1130 (1328)
T ss_pred HHHHHhcCccccccceeeccccccccCCCCCcCchHHHHHHHHHHHHHHHCCCCceEEEEecCccCCHHHheeCccchHH
Confidence 99999999999999999999999999999999999999999999999999999 69999999999999999999999999
Q ss_pred HHHHHHhcC-------------Ccccccch----------------hhhc-cCCchhHHHHHhhccccccCceeCCcccc
Q 042388 491 LMDVERRHG-------------KFKPVIKK----------------AMVE-LEGIPFKTFASLREDWTIKNLYVSPGPIQ 540 (567)
Q Consensus 491 ~~~~e~~~g-------------~~~p~i~~----------------~~v~-l~~~~f~~~~~~r~~w~~~d~y~~pGpiq 540 (567)
||++|+|+| +.||||+| ++|| |+|+||+.|+++|++|+++|+|++|||||
T Consensus 1131 mm~~~~~~~~~~~~~~~~~~~~~~k~vi~~~~~~~~~~~~~~~~~~~~Vd~l~g~~f~~~~~~r~~w~~~d~y~~PGPiQ 1210 (1328)
T PTZ00468 1131 LMTLNIEGDKIMDSRNNSNLSFESKKLLTESTLGNAGHQLEFICKLNSVNMRNNPSFKLLMNHIEKWEVDNTYANPGPIQ 1210 (1328)
T ss_pred hhCcccccCcccccccccccccccccceeccccccccccccccccccccccccCHHHHHHHHHHHhhhhccccCCCCCcc
Confidence 999999999 77999999 8999 89999999999999999999999999999
Q ss_pred ccCCCCCCCcceeEecCC
Q 042388 541 FVGPNANDINHTLKLELG 558 (567)
Q Consensus 541 ~~g~~~~~~~~tl~~e~~ 558 (567)
|+||.+|++++||.+|++
T Consensus 1211 ~~gp~~~~~~~tL~~e~~ 1228 (1328)
T PTZ00468 1211 YFNLFKNLFNRTLFESEY 1228 (1328)
T ss_pred ccCccccCCCeeeeehhh
Confidence 999999999999999993
No 10
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=100.00 E-value=8.4e-85 Score=683.34 Aligned_cols=336 Identities=41% Similarity=0.567 Sum_probs=309.8
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCC-CC
Q 042388 90 LKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKI-ET 168 (567)
Q Consensus 90 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~-~~ 168 (567)
+||||++|||||||+||+|+|+++++.. .+.+||||++||+||+++++++|+++.++.|+++||+ +|||+|+++ .+
T Consensus 1 ~ri~Il~sGG~apG~N~~i~~~v~~~~~--~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs-~LgtsR~~~~~~ 77 (338)
T cd00363 1 KKIGVLTSGGDAPGMNAAIRGVVRSAIA--EGLEVYGIYEGYAGLVEGDIKELDWESVSDIINRGGT-IIGSARCKEFRT 77 (338)
T ss_pred CeEEEEccCCCchhHHHHHHHHHHHHHH--CCCEEEEEecChHHhCCCCeEeCCHHHhcchhhCCCe-ecccCCCCccCC
Confidence 5999999999999999999999999754 4689999999999999999999999999999999998 999999986 67
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHHH
Q 042388 169 PEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMI 248 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I 248 (567)
++++++++++|++++||+||+||||||+++|++|+|+|++++.+++|||||||||||++++| +|||||||+++++++|
T Consensus 78 ~~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td--~s~Gf~TA~~~~~~~i 155 (338)
T cd00363 78 EEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTD--YTIGFDTALKTIVEAI 155 (338)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcc--cCcCHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999877 5999999999999999
Q ss_pred HHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEe
Q 042388 249 GNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVILIP 328 (567)
Q Consensus 249 ~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~ 328 (567)
++|+.||.|+ ++|||||+|||+|||||++||||++||+|||||+++. .+..+.+++.|++|.++|++|++||||
T Consensus 156 ~~l~~~a~s~-~rv~ivEvMGR~~G~Lal~~ala~~ad~iliPE~~~~-----~~~~~~~~~~i~~r~~~~~~~~vivvs 229 (338)
T cd00363 156 DRIRDTASSH-QRTFVVEVMGRHCGDIALEAGLATGADIIFIPEEPAA-----DEWEEEMVDVIKKRRERGKRHGIVIVA 229 (338)
T ss_pred HHHHHhcccC-CCEEEEEECCcCHHHHHHHHHHHhCCCEEEeCCCCCC-----CCCHHHHHHHHHHHHHhcCCeEEEEEe
Confidence 9999999995 5699999999999999999999999999999999974 344788999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHHH
Q 042388 329 EGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIETEKMLIQMV 408 (567)
Q Consensus 329 EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~lV 408 (567)
||+.+.+|. ..++++|+++|
T Consensus 230 EG~~~~~~~------------------------------------------------------------~~~~~~l~~~i 249 (338)
T cd00363 230 EGAIDFIPK------------------------------------------------------------PITEKLLAKLV 249 (338)
T ss_pred CCCcccccc------------------------------------------------------------CchHHHHHHHH
Confidence 999753221 12345677777
Q ss_pred HHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEeccch
Q 042388 409 ETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGNLGEPVEEWTVGGTAL 488 (567)
Q Consensus 409 ~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~l~~~~~~w~~~~vPL 488 (567)
++++ .+++|.++|||+|||+.||+|||.||++||..|++++.+|.||+|++++++. +|++..+||
T Consensus 250 ~~~~-----------~~~~r~~~lGy~qRg~~ps~~D~~~a~~lG~~Av~~~~~g~tg~mv~~~~~~----~~~~~~vpl 314 (338)
T cd00363 250 EERL-----------GFDTRATVLGHVQRGGTPTAFDRILASRLGAEAVELLLEGTGGTPVGIQNLN----ENQVVRHPL 314 (338)
T ss_pred HHHc-----------CCceEEeecCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCCcEEEEECCc----cCEEEEecH
Confidence 7765 3778999999999999999999999999999999999999999999999975 899999999
Q ss_pred HhHHHHHHhcCCcccccchhhhccCCchhHHHH
Q 042388 489 TSLMDVERRHGKFKPVIKKAMVELEGIPFKTFA 521 (567)
Q Consensus 489 ~~~~~~e~~~g~~~p~i~~~~v~l~~~~f~~~~ 521 (567)
.++++.+|+.+ ||++|++|+.|.
T Consensus 315 ~~~~~~~~~~~----------~~~~~~~~~~~~ 337 (338)
T cd00363 315 TEAVNMTKRVG----------VDLEGRPFKKFA 337 (338)
T ss_pred HHHHhhhcccc----------cCCChHHHHHhh
Confidence 99999998876 899999999874
No 11
>PRK14072 6-phosphofructokinase; Provisional
Probab=100.00 E-value=1.7e-81 Score=673.02 Aligned_cols=353 Identities=22% Similarity=0.345 Sum_probs=308.3
Q ss_pred CcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCcccccc---ccccCCcccccccCCC
Q 042388 89 SLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYP---YRNQGGFDMICSGRDK 165 (567)
Q Consensus 89 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~---~~n~GG~~~LGS~R~k 165 (567)
.+||||++|||||||||++|+|+++.+....+.++||||++||+||+++++++|+...++. +.++||+ +|||||++
T Consensus 3 ~k~i~IltsGGdapGmNaaIr~vv~~a~~~g~~~~V~G~~~G~~GLl~~~~~~l~~~~~~~i~~i~~~gGt-~LgssR~~ 81 (416)
T PRK14072 3 KGNALYAQSGGPTAVINASAAGVIEEARKHKKIGKVYGARNGIIGILDEDLIDLSKESDEALAALAHTPSG-ALGSCRYK 81 (416)
T ss_pred CceEEEEccCCchHHHHHHHHHHHHHHHHhCCceEEEEEecChHHhcCCCeeeCChhhHhHHHHHhcCCCe-EeccCCCC
Confidence 4899999999999999999999999976554449999999999999999999999876666 8999998 99999998
Q ss_pred C----CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHH
Q 042388 166 I----ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTAC 241 (567)
Q Consensus 166 ~----~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~ 241 (567)
+ .+++++++++++|++++||+||+||||||+++|++|+|+++++|++++||||||||||||.+||+ |||||||+
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~--t~GF~TA~ 159 (416)
T PRK14072 82 LKSLEEDRAEYERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDH--CPGFGSAA 159 (416)
T ss_pred CcccccChHHHHHHHHHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCC--CCChHHHH
Confidence 6 37899999999999999999999999999999999999999999999999999999999999985 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCC--eeEEEEecCCCCcHHHHHhhhh-----cCCcEEEECCcchhhhcchHhHHHHHHHHHHH
Q 042388 242 KIFSEMIGNVMTDARSTGK--YYHFVRLMGRAASHITLECALQ-----THPNITIIGEEVAAKKQTLKNVTDYITDIICK 314 (567)
Q Consensus 242 k~~ae~I~ni~~da~S~~k--~~~fVevMGR~ag~LAL~~aLa-----t~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~ 314 (567)
++++++|++|+.|++|+.+ +|||||||||+||||||+|||| ++||+|||||.+++ .+.+++.|++
T Consensus 160 ~~i~~ai~~l~~D~~~ta~s~Rv~iVEvMGR~aG~LAl~a~lA~~~~~~gad~iliPE~~~~--------~~~~~~~i~~ 231 (416)
T PRK14072 160 KYIATSVLEAALDVAAMANTSKVFILEVMGRHAGWLAAAAALAKQNPDDAPHLIYLPERPFD--------EEKFLADVRA 231 (416)
T ss_pred HHHHHHHHHHHHHHHhcccCceEEEEEEeCcchhHHHHHHhhccccCCCCccEEEccCCCCC--------HHHHHHHHHH
Confidence 9999999999989887654 5999999999999999999999 99999999999984 2455566676
Q ss_pred HHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcc
Q 042388 315 RSEAGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQ 394 (567)
Q Consensus 315 R~~~gk~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ 394 (567)
+++. ++|+|||||||+.+ +++..+.. . ...+|+|||++
T Consensus 232 ~~~~-~~~~ivvVaEG~~~----------------------~~g~~i~e------------------~-~~~~D~~gh~~ 269 (416)
T PRK14072 232 IVKR-YGYCVVVVSEGIRD----------------------ADGKFIAE------------------A-GLAEDAFGHAQ 269 (416)
T ss_pred HHHh-CCCeEEEEecCccc----------------------ccccchhc------------------c-ccccCCCCCcc
Confidence 6655 99999999999853 12221110 0 12359999999
Q ss_pred cchhhhHHHHHHHHHHHHHHhhhcCCcCcccccceecCcccccCCC--CCHHHHHHHHHHHHHHHHHHHcCCCceEEEEe
Q 042388 395 VAKIETEKMLIQMVETELNKMKQKGAYKGQFNGQSHFFGYEGRCGL--PTNFDANYCYALGYAAAALLHAGKTGLISSVG 472 (567)
Q Consensus 395 ls~i~te~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~--PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~ 472 (567)
++++ +++|+++|++++. +++|++++||+||||. ||+|||.||++||..|++++.+|.+|+|++++
T Consensus 270 l~g~--~~~La~~i~~~~g-----------~~~R~~~LG~~QRgg~~~ps~~Dr~~a~~lG~~AV~~~~~G~~g~mv~l~ 336 (416)
T PRK14072 270 LGGV--APVLANLIKEKLG-----------KKVHWAVLDYLQRAARHIASKTDVEEAYAVGKAAVEYALAGKNGVMPAIR 336 (416)
T ss_pred cccH--HHHHHHHHHHHhC-----------CeEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCceEEEE
Confidence 9985 6788888877753 5678999999999998 99999999999999999999999999999999
Q ss_pred cCCCCccceEEeccchHhHHHHHHhcCCcccccchhhhccCC
Q 042388 473 NLGEPVEEWTVGGTALTSLMDVERRHGKFKPVIKKAMVELEG 514 (567)
Q Consensus 473 ~l~~~~~~w~~~~vPL~~~~~~e~~~g~~~p~i~~~~v~l~~ 514 (567)
+...++|+|++..+||.++++.++.. .+.+++++|
T Consensus 337 ~~~~~~y~~~~~~vpl~~v~~~~k~v-------~~~~i~~~~ 371 (416)
T PRK14072 337 RTSDDPYKWKIGLVPLSKVANKEKKM-------PPEFINEDG 371 (416)
T ss_pred cCCCCcceeEEEcccHHHHHhhcCcC-------CHHHHhcCC
Confidence 99999999999999999999854422 235556655
No 12
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.9e-82 Score=656.70 Aligned_cols=343 Identities=34% Similarity=0.443 Sum_probs=298.3
Q ss_pred CcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCC-CC
Q 042388 89 SLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDK-IE 167 (567)
Q Consensus 89 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k-~~ 167 (567)
++||||+|||||||||||||+|+++++.. .+++||||++||.||+++++++|+++.++.|+|+||| +|||+|.+ +.
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~--~g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT-~lgssR~~~~~ 78 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIK--EGLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGT-FLGSARFPEFK 78 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHH--cCCEEEEEecchhhhcCCcceeccccchhHHHhcCCe-EEeeCCCCCcc
Confidence 58999999999999999999999999764 4999999999999999999999999999999999998 99999975 88
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHH
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEM 247 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~ 247 (567)
++|..+++++++++++||+||+||||||+++|+.|+|++ +++|||||||||||+..+| .|||||||+++++++
T Consensus 79 ~~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~-----~i~vVGvPkTIDNDi~~td--~tiGfdTA~~~~~ea 151 (347)
T COG0205 79 TEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEG-----GIPVVGVPKTIDNDISGTD--FTIGFDTALETAVEA 151 (347)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhc-----CCcEEecCCCccCCCcccc--cCccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999986 3899999999999999887 599999999999999
Q ss_pred HHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEE
Q 042388 248 IGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVILI 327 (567)
Q Consensus 248 I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli 327 (567)
|++|+ |++|++++|||||||||+||||||+||||++||+|+|||++++. .+.+.++....+|..+|++|++|++
T Consensus 152 id~l~-dtassh~r~~iveVMGR~aG~lAl~aglA~~a~~ilipE~~~~~-----~i~~~~~~i~~~~~~~gk~~~iIvv 225 (347)
T COG0205 152 IDNLR-DTASSHERIFIVEVMGRHAGWLALAAGLATGADIILIPEEPADL-----IIEELIAEIKAKREARGKKHAIIVV 225 (347)
T ss_pred HHHHH-HHHhCcCCEEEEEecCcChhHHHHHHHHhcCCCEEEecCccccc-----hHHHHHHHHHHHHHHhCCCceEEEE
Confidence 99998 77777778999999999999999999999999999999999854 2333334444456669999999999
Q ss_pred eCCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHH
Q 042388 328 PEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIETEKMLIQM 407 (567)
Q Consensus 328 ~EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~l 407 (567)
+||+.+++|+ +|+.. ...
T Consensus 226 aEG~~~~~~~----------------------------------------------------~~~~~----------~~~ 243 (347)
T COG0205 226 AEGAIDQIGE----------------------------------------------------NGAEL----------LAA 243 (347)
T ss_pred cccccccccc----------------------------------------------------chhhH----------HHH
Confidence 9999886553 11111 111
Q ss_pred HHHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEeccc
Q 042388 408 VETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGNLGEPVEEWTVGGTA 487 (567)
Q Consensus 408 V~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~l~~~~~~w~~~~vP 487 (567)
+++.+... .+++|.++|||+||||.||+||+.||++||..||+++.+|++|+|++++|++.....|.....|
T Consensus 244 i~~~~~~~--------~~~~r~t~LGhiqRgg~p~~fDr~~a~~lG~~AV~~l~~g~~~~~v~i~~~~~v~~~~~~~~~~ 315 (347)
T COG0205 244 IEELLALG--------DFETRVTVLGHIQRGGTPSAFDRVLASRLGAAAVDLLLEGKTGYMVGIRNNKIVHVPIDEAVAP 315 (347)
T ss_pred HHHHhhhc--------ccceEEEeccccccCCCCchHHHHHHHHHHHHHHHHHHcCCCCceEEEeCCeeEeehhHhhhhh
Confidence 22222211 1788999999999999999999999999999999999999999999999999888888888888
Q ss_pred hHhHHHHHHhcCCcccccchhhhccCCchhHHHH
Q 042388 488 LTSLMDVERRHGKFKPVIKKAMVELEGIPFKTFA 521 (567)
Q Consensus 488 L~~~~~~e~~~g~~~p~i~~~~v~l~~~~f~~~~ 521 (567)
...++..++ .++.+++.+|++...++..+.
T Consensus 316 ~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~ 345 (347)
T COG0205 316 LKMVMSLEE----PDRSIKLDLVDLAKRLGIYFG 345 (347)
T ss_pred hhhhhcccc----cCcchhhHHHhhhhhhhhhhc
Confidence 888777665 456688999999988887653
No 13
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=100.00 E-value=3.7e-78 Score=629.01 Aligned_cols=320 Identities=27% Similarity=0.419 Sum_probs=283.4
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEc-CccccccccccCCcccccccCCCCC--
Q 042388 91 KIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVEL-STEYIYPYRNQGGFDMICSGRDKIE-- 167 (567)
Q Consensus 91 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eL-t~~~v~~~~n~GG~~~LGS~R~k~~-- 167 (567)
|||||+|||||||||++|+|+++++.. +++++||||++||+||+++++++| ++++++.|+++||+ +|||+|+++.
T Consensus 1 ~IgIltsGG~apGmN~~i~~~v~~a~~-~~g~~v~g~~~G~~GL~~~~~~~l~~~~~v~~~~~~GGt-~LgtsR~~~~~~ 78 (324)
T TIGR02483 1 RIGVLTGGGDCPGLNAVIRGVVRRAIA-EYGWEVIGIRDGWRGLLEGDTVPLLDLEDVRGILPRGGT-ILGSSRTNPFKY 78 (324)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHH-cCCceEEEEccCHHHhCCCCeEecCCHHHHHHHHhCCCc-cccCCCCCcccc
Confidence 699999999999999999999998543 457899999999999999999999 99999999999997 9999999863
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHH
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEM 247 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~ 247 (567)
+++++++++++|++++||+||+||||||+++|+.|+|. +++|||||||||||++++| +|||||||+++++++
T Consensus 79 ~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~~~------gi~vigiPkTIDNDl~gtd--~tiGfdTA~~~~~~~ 150 (324)
T TIGR02483 79 EEDGDDKIVANLKELGLDALIAIGGDGTLGIARRLADK------GLPVVGVPKTIDNDLEATD--YTFGFDTAVEIATEA 150 (324)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHhc------CCCEEeeccccCCCCcCCc--cCcCHHHHHHHHHHH
Confidence 35889999999999999999999999999999999873 4899999999999999987 599999999999999
Q ss_pred HHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEE
Q 042388 248 IGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVILI 327 (567)
Q Consensus 248 I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli 327 (567)
|++++.||.|++| |||||+|||+||||||+||||++||++||||+++. .+++++.|++|+++|++|++|||
T Consensus 151 i~~i~~ta~S~~r-~~ivEvMGR~~G~LAl~~ala~~a~~iliPE~~~~--------~~~l~~~v~~~~~~g~~~~vvvv 221 (324)
T TIGR02483 151 LDRLHTTAESHHR-VMVVEVMGRHAGWIALHSGIAGGADVILIPEIPFD--------IDSVCEKVRERFARGKRFAIVVV 221 (324)
T ss_pred HHHHHHHHhhcCC-EEEEEEcCCChhHHHHHHHhccCCCEEEecCCCCC--------HHHHHHHHHHHHHhCCCceEEEE
Confidence 9999999999865 79999999999999999999999999999999863 35677888999999999999999
Q ss_pred eCCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHH
Q 042388 328 PEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIETEKMLIQM 407 (567)
Q Consensus 328 ~EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~l 407 (567)
+||+.+. ++... .+ ...+|+|||++++++ .++|+++
T Consensus 222 sEG~~~~----------------------~~~~~------------------~~--~~~~d~~gh~~~~~~--~~~l~~~ 257 (324)
T TIGR02483 222 AEGAKPK----------------------GGEMV------------------VQ--EGVKDAFGHVRLGGI--GNWLAEE 257 (324)
T ss_pred ecCcccc----------------------ccchh------------------cc--ccccccccCcccCcH--HHHHHHH
Confidence 9998642 11100 00 024799999999885 4566666
Q ss_pred HHHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEeccc
Q 042388 408 VETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGNLGEPVEEWTVGGTA 487 (567)
Q Consensus 408 V~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~l~~~~~~w~~~~vP 487 (567)
+++++ .+++|...+||+||||.||+||+.+|++||..|++++.+|.+|+|+++++.+ +..+|
T Consensus 258 i~~~~-----------g~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~~~mv~~~~~~-------~~~~p 319 (324)
T TIGR02483 258 IERRT-----------GIETRATVLGHLQRGGSPSAFDRVLATRFGVAAVDLVHEGQFGHMVALRGTD-------IVYVP 319 (324)
T ss_pred HHHhc-----------CCcceECCcChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCE-------EEEee
Confidence 65543 3677889999999999999999999999999999999999999999999975 78899
Q ss_pred hHhH
Q 042388 488 LTSL 491 (567)
Q Consensus 488 L~~~ 491 (567)
|.++
T Consensus 320 ~~~~ 323 (324)
T TIGR02483 320 IAEA 323 (324)
T ss_pred HHHh
Confidence 8865
No 14
>PLN02564 6-phosphofructokinase
Probab=100.00 E-value=4.3e-77 Score=641.79 Aligned_cols=356 Identities=24% Similarity=0.312 Sum_probs=308.2
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKI 166 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~ 166 (567)
+...|||||||||+|||||+||++++..+...+...+||||++||+||+++++++||++.++.|.++||+ +|||||.+.
T Consensus 85 p~~~riaIlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGT-iLGTsR~~~ 163 (484)
T PLN02564 85 SDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGGT-ILGTSRGGH 163 (484)
T ss_pred CcceEEEEECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCCCeEeCCHHHhhcHhhCCCc-eeccCCCcc
Confidence 3458999999999999999999999998765555689999999999999999999999999999999997 999999865
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHH
Q 042388 167 ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSE 246 (567)
Q Consensus 167 ~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae 246 (567)
+.++++++|++++||+||+||||||+++|+.|+++++++|++++||||||||||||+++| +|||||||++++++
T Consensus 164 ----~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD--~T~GFdTAv~~~~~ 237 (484)
T PLN02564 164 ----DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVID--KSFGFDTAVEEAQR 237 (484)
T ss_pred ----hHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcc--cCCCHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999999999999999888 59999999999999
Q ss_pred HHHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhc-CCcEEEECCcchhhhcchHhHHHHHHHHHHHHHHcCCCeEEE
Q 042388 247 MIGNVMTDARSTGKYYHFVRLMGRAASHITLECALQT-HPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVI 325 (567)
Q Consensus 247 ~I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat-~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvI 325 (567)
+|++++.||.|++++|+|||+|||+|||||+++|||+ +||+|||||.++ +|++ ...+++.|++|++. ++|+||
T Consensus 238 aI~~i~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~gad~iLIPE~pf----~le~-~~~ll~~i~~rl~~-~~~~VI 311 (484)
T PLN02564 238 AINAAHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPF----YLEG-KGGLFEFIEKRLKE-NGHMVI 311 (484)
T ss_pred HHHHHHHHHHhcCCCEEEEEECCCCHHHHHHHHHHhhCCCCEEEeCCCCC----Ccch-HHHHHHHHHHHHhc-cCCEEE
Confidence 9999999999998789999999999999999999999 699999999997 4443 23566778888877 799999
Q ss_pred EEeCCCCC-CchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcccchhhhHHHH
Q 042388 326 LIPEGLID-FIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIETEKML 404 (567)
Q Consensus 326 li~EGl~~-~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL 404 (567)
||+||+-. ++++ ..+. ...+|++||+++.++ ..+|
T Consensus 312 VVAEGagq~~~~~----------------------------------------~~~~--~~~~Da~Gn~~l~di--g~~L 347 (484)
T PLN02564 312 VVAEGAGQDLIAE----------------------------------------SMES--SDLQDASGNKLLLDV--GLWL 347 (484)
T ss_pred EEeCCCccchhhh----------------------------------------hhcc--cccccccCCcccCcH--HHHH
Confidence 99999842 1110 0000 124799999999987 6788
Q ss_pred HHHHHHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEe
Q 042388 405 IQMVETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGNLGEPVEEWTVG 484 (567)
Q Consensus 405 ~~lV~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~l~~~~~~w~~~ 484 (567)
++.|++++.+++. ..+++++..+||+|||+.|+++|+.||+.||..||+++++|+||+|+++.|.+ +.
T Consensus 348 a~~I~~~~~~~~~-----~~~~~r~i~lgy~qRgg~p~a~Dri~a~~lG~~AV~~~~aG~tg~mVg~~~~~-------~~ 415 (484)
T PLN02564 348 SQKIKDHFTKVKK-----MPINLKYIDPTYMIRAIPSNASDNVYCTLLAHSAVHGAMAGYTGFTVGPVNGR-------HA 415 (484)
T ss_pred HHHHHHHhhhccc-----CCceEEEecCCchhcCCCCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCE-------EE
Confidence 8888888744332 24778899999999999999999999999999999999999999999999975 88
Q ss_pred ccchHhHHHHHHhcCCcccccchhhhccCCchhHHHHHh
Q 042388 485 GTALTSLMDVERRHGKFKPVIKKAMVELEGIPFKTFASL 523 (567)
Q Consensus 485 ~vPL~~~~~~e~~~g~~~p~i~~~~v~l~~~~f~~~~~~ 523 (567)
.+||.+++.. +..|++++..|....+.
T Consensus 416 ~vPi~~~~~~------------~~~v~~~~~~w~~~l~~ 442 (484)
T PLN02564 416 YIPFYRITEK------------QNKVVITDRMWARLLSS 442 (484)
T ss_pred EEEHHHHhcc------------CCccCCChHHHHHHHHH
Confidence 9999998763 22345666666554433
No 15
>PRK03202 6-phosphofructokinase; Provisional
Probab=100.00 E-value=2.7e-77 Score=621.26 Aligned_cols=300 Identities=30% Similarity=0.429 Sum_probs=272.9
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCC-CCC
Q 042388 90 LKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDK-IET 168 (567)
Q Consensus 90 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k-~~~ 168 (567)
+||||++|||||||||++|+|+++++.. .+.+||||++||+||+++++++|++++++.|.++||+ +|||+|++ +.+
T Consensus 2 k~i~Il~sGG~apG~Na~i~~~~~~~~~--~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs-~LgtsR~~~~~~ 78 (320)
T PRK03202 2 KRIGVLTSGGDAPGMNAAIRAVVRTAIS--EGLEVYGIYDGYAGLLEGDIVKLDLKSVSDIINRGGT-ILGSARFPEFKD 78 (320)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHHH--CCCeEEEEecChhhhcCCCEEECCHHHHhhHHhCCCc-ccccCCCCCcCC
Confidence 7999999999999999999999999653 4789999999999999999999999999999999997 99999986 567
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHHH
Q 042388 169 PEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMI 248 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I 248 (567)
++++++++++|++++||+||+||||||+++|++|+|+ +++|||||||||||++++| +|||||||+++++++|
T Consensus 79 ~~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e~------~i~vigiPkTIDNDl~gtd--~s~Gf~TA~~~~~~~i 150 (320)
T PRK03202 79 EEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTEH------GIPVIGLPGTIDNDIAGTD--YTIGFDTALNTAVEAI 150 (320)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhc------CCcEEEecccccCCCCCCc--cCcCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999984 6899999999999999988 5999999999999999
Q ss_pred HHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEe
Q 042388 249 GNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVILIP 328 (567)
Q Consensus 249 ~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~ 328 (567)
++|+.||.|++ +|||||+|||+||||||+||||++||+|||||+++. .+++++.|++|+++|++|++||||
T Consensus 151 ~~l~~~a~s~~-rv~iVEvMGR~~G~LAl~~ala~~a~~iliPE~~~~--------~~~l~~~i~~r~~~g~~~~vivvs 221 (320)
T PRK03202 151 DRLRDTASSHE-RVFIVEVMGRHAGDLALHAGIAGGAEVILIPEVPFD--------IEELCAKIKKGRERGKKHAIIVVA 221 (320)
T ss_pred HHHHHHHhccC-CEEEEEECCCChHHHHHHHHHhcCCCEEEeCCCCCC--------HHHHHHHHHHHHHhcCCcEEEEEe
Confidence 99999999875 589999999999999999999999999999999863 466778889999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHHH
Q 042388 329 EGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIETEKMLIQMV 408 (567)
Q Consensus 329 EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~lV 408 (567)
||+.+- ..|++.+
T Consensus 222 Eg~~~~-------------------------------------------------------------------~~l~~~i 234 (320)
T PRK03202 222 EGVMPA-------------------------------------------------------------------EELAKEI 234 (320)
T ss_pred CCCCCH-------------------------------------------------------------------HHHHHHH
Confidence 998530 0133444
Q ss_pred HHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEeccch
Q 042388 409 ETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGNLGEPVEEWTVGGTAL 488 (567)
Q Consensus 409 ~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~l~~~~~~w~~~~vPL 488 (567)
++++ ++++|+..+||.||||.||+||+.+|++||..|++++.+|.+|+|+++++.+ +..+||
T Consensus 235 ~~~~-----------~~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~~~~v~~~~~~-------~~~vpl 296 (320)
T PRK03202 235 EERT-----------GLETRVTVLGHIQRGGSPTAFDRVLASRMGAHAVELLLEGKGGRMVGIQNNK-------IVHVPI 296 (320)
T ss_pred HHHh-----------CCceEEcccchhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCE-------EEEEeH
Confidence 4443 3677999999999999999999999999999999999999999999999974 889999
Q ss_pred HhHH-HH
Q 042388 489 TSLM-DV 494 (567)
Q Consensus 489 ~~~~-~~ 494 (567)
.+++ +.
T Consensus 297 ~~v~~~~ 303 (320)
T PRK03202 297 EEAVENM 303 (320)
T ss_pred HHHHhcC
Confidence 9998 53
No 16
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=100.00 E-value=6.1e-77 Score=641.59 Aligned_cols=330 Identities=26% Similarity=0.342 Sum_probs=297.1
Q ss_pred CCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCC
Q 042388 88 KSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIE 167 (567)
Q Consensus 88 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~ 167 (567)
...|||||||||+|||||+||++++.++...+...+||||++||+||+++++++||++.++.|+++||+ +|||||.++
T Consensus 86 ~~~~iaIvT~GG~~PGlN~vIr~iv~~~~~~~~v~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGT-iLGTSR~~~- 163 (459)
T PTZ00286 86 KEVKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAKYGYKGLYKEDWIKLDPKDVKTIHRLGGT-ILGSSRGGF- 163 (459)
T ss_pred cccEEEEECCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHhcCCCeEECCHHHhhhHHhCCCc-eeccCCChh-
Confidence 458999999999999999999999999875556689999999999999999999999999999999997 999999874
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHH
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEM 247 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~ 247 (567)
++++++++|++++||+||+||||||+++|..|+|++.++|++|+||||||||||||+.+| +|||||||+++++++
T Consensus 164 ---~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td--~S~GFdTAv~~~~~a 238 (459)
T PTZ00286 164 ---DPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIID--ESFGFQTAVEEAQNA 238 (459)
T ss_pred ---hHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcc--cCcCchHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999877 599999999999999
Q ss_pred HHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcC-CcEEEECCcchhhhcchHhHHHHHHHHHHHHHHcCCCeEEEE
Q 042388 248 IGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTH-PNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVIL 326 (567)
Q Consensus 248 I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~-pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIl 326 (567)
|++++.||.|++++|+|||+|||+|||||++||||++ ||+|||||.++ +| +.+++.|++|++. ++|+|||
T Consensus 239 I~~~~~eA~S~~~~v~iVEvMGR~sG~LAl~aaLA~~~ad~vlIPE~~f----~l----~~ll~~l~~r~~~-~~~~VIV 309 (459)
T PTZ00286 239 IRAAYVEAKSAKNGVGIVKLMGRDSGFIALHASVASADVNVCLIPEFDI----PL----EGVLEYIEQRLQK-KGHCVIV 309 (459)
T ss_pred HHHHHHHHHHhcCcEEEEEecCcchhHHHHHHhhhhcCCCEEEeCCCCC----CH----HHHHHHHHHHHhc-CCcEEEE
Confidence 9999999999988899999999999999999999996 99999999987 44 4566677888754 8999999
Q ss_pred EeCCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHH
Q 042388 327 IPEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIETEKMLIQ 406 (567)
Q Consensus 327 i~EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~ 406 (567)
|+||+.+.+.+ +. +...+|++||+++.++ ..+|++
T Consensus 310 VaEGa~~~~~~--------------------~~-----------------------~~~~~D~~Gn~~l~di--g~~L~~ 344 (459)
T PTZ00286 310 VAEGAGQSLKD--------------------AD-----------------------LDLGTDASGNKKLWDI--GVYLKD 344 (459)
T ss_pred EecCCcccccc--------------------cc-----------------------ccccccccCCcccccH--HHHHHH
Confidence 99998642111 00 0124799999999876 678999
Q ss_pred HHHHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEecc
Q 042388 407 MVETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGNLGEPVEEWTVGGT 486 (567)
Q Consensus 407 lV~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~l~~~~~~w~~~~v 486 (567)
.|++++++++ ..+++++..+||+|||+.||+||+.||+.||..|++++++|.||+|+++++.. +..+
T Consensus 345 ~I~~~~~~~~------~~~~~r~~~~gy~qRg~~psa~Dr~~a~~lG~~AV~~~~~G~tg~~Vg~~~~~-------~~~v 411 (459)
T PTZ00286 345 EITKYLKKKK------PEHTVKYIDPSYMIRAVPANAADAKFCTQLAQNAVHGAMAGFTGFIIGHVHNN-------YVMI 411 (459)
T ss_pred HHHHHHhhcc------CceEEEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCE-------EEEE
Confidence 9988886653 35778889999999999999999999999999999999999999999999874 7899
Q ss_pred chHhH
Q 042388 487 ALTSL 491 (567)
Q Consensus 487 PL~~~ 491 (567)
||.++
T Consensus 412 Pl~~v 416 (459)
T PTZ00286 412 PIKEM 416 (459)
T ss_pred eHHHH
Confidence 99987
No 17
>PLN02884 6-phosphofructokinase
Probab=100.00 E-value=5.2e-77 Score=635.05 Aligned_cols=346 Identities=22% Similarity=0.282 Sum_probs=301.4
Q ss_pred CcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCC-EEEEEeCCcccccCCC--EEEcCccccccccccCCcccccccCCC
Q 042388 89 SLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGS-KLYGFKGGPAGIMKCK--YVELSTEYIYPYRNQGGFDMICSGRDK 165 (567)
Q Consensus 89 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~-~v~Gf~~G~~GLl~~~--~~eLt~~~v~~~~n~GG~~~LGS~R~k 165 (567)
.+|||||||||||||||+||+++++++. ..+. +||||++||+||++++ .++|+++.++.+.++||+ +|||+|.+
T Consensus 53 ~~rIaIltsGGdaPGmNa~Iravv~~a~--~~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt-~LGtsR~~ 129 (411)
T PLN02884 53 EVKAAIVTCGGLCPGLNDVIRQIVFTLE--IYGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHLSGGS-LLGVSRGG 129 (411)
T ss_pred ceEEEEEcCCCCCccHhHHHHHHHHHHH--HcCCcEEEEEccCHHHHhCCCceeeecCHHHHHHHHhCCCc-eeccCCCC
Confidence 4899999999999999999999999864 3466 8999999999999999 677889999999999997 99999998
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHH
Q 042388 166 IETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFS 245 (567)
Q Consensus 166 ~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~a 245 (567)
+ .+++++++|++++||+||+||||||+++|.+|++++.++|++++||||||||||||+++|+ |||||||+++++
T Consensus 130 ~----~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~--TiGFdTAv~~~~ 203 (411)
T PLN02884 130 A----KTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDK--TFGFDTAVEEAQ 203 (411)
T ss_pred c----cHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCcCccc--CCCHHHHHHHHH
Confidence 7 4889999999999999999999999999999999999999999999999999999999884 999999999999
Q ss_pred HHHHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcC-CcEEEECCcchhhhcchHhHHHHHHHHHHHHHHcCCCeEE
Q 042388 246 EMIGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTH-PNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGV 324 (567)
Q Consensus 246 e~I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~-pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gv 324 (567)
++|++|+.||.|++++|+|||+|||+|||||+++||+++ ||+|||||.+++..+ .+.+++.|++|++ +++|+|
T Consensus 204 ~ai~~l~~tA~s~~~rv~iVEvMGR~aG~LAl~aalA~g~ad~ilIPE~~f~~~~-----~~~~~~~i~~~~~-~k~~~i 277 (411)
T PLN02884 204 RAINSAYIEAHSAYHGIGLVKLMGRSSGFIAMHASLASGQVDICLIPEVPFTLDG-----PNGVLRHLEHLIE-TKGSAV 277 (411)
T ss_pred HHHHHHHHhhhccCCcEEEEEeCCCCHHHHHHHHHHhcCCCCEEEeCCCCCCccc-----HHHHHHHHHHHHh-cCCcEE
Confidence 999999999998666799999999999999999999998 999999999885311 3556777787776 899999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcccchhhhHHHH
Q 042388 325 ILIPEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIETEKML 404 (567)
Q Consensus 325 Ili~EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL 404 (567)
|+|+||+...+.+ . ...+|++||++++++ .+.|
T Consensus 278 IVVAEG~g~~~~~------------------~---------------------------~~~~Da~G~~~l~~~--~~~L 310 (411)
T PLN02884 278 VCVAEGAGQDLLQ------------------K---------------------------TNATDASGNPVLGDI--GVHL 310 (411)
T ss_pred EEEeccccccccc------------------c---------------------------cccccccCCcccCcH--HHHH
Confidence 9999998432111 0 014799999999986 5568
Q ss_pred HHHHHHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEe
Q 042388 405 IQMVETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGNLGEPVEEWTVG 484 (567)
Q Consensus 405 ~~lV~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~l~~~~~~w~~~ 484 (567)
+++|++++++.. ..+++++..+||+||||.|+.+|+.||+.||..|++++.+|.||+|+++++. ++.
T Consensus 311 a~~i~~~~~~~g------~~~~~r~~~lGy~qRgg~p~a~Dr~la~~lG~~AV~~~~~G~sg~mV~l~~~-------~~~ 377 (411)
T PLN02884 311 QQEIKKHFKDIG------VPADVKYIDPTYMIRACRANASDAILCTVLGQNAVHGAFAGFSGITVGICNT-------HYV 377 (411)
T ss_pred HHHHHHHhhccC------CCceEEEccCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECC-------EEE
Confidence 888877765431 2468899999999999999999999999999999999999999999999995 488
Q ss_pred ccchHhHHHHHHhcCCcccccchhhhccCCchhHHHH
Q 042388 485 GTALTSLMDVERRHGKFKPVIKKAMVELEGIPFKTFA 521 (567)
Q Consensus 485 ~vPL~~~~~~e~~~g~~~p~i~~~~v~l~~~~f~~~~ 521 (567)
.+||.++++.+ ..||.+|..|+.+.
T Consensus 378 ~vpl~~v~~~~------------k~vd~~~~~~~~~~ 402 (411)
T PLN02884 378 YLPIPEVIAYP------------RRVDPNSRMWHRCL 402 (411)
T ss_pred EEeHHHHhcCC------------CCCCCCcHHHHHHH
Confidence 99999998532 24566777776553
No 18
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=100.00 E-value=1.5e-76 Score=610.58 Aligned_cols=299 Identities=30% Similarity=0.426 Sum_probs=267.7
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCC-CCCh
Q 042388 91 KIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDK-IETP 169 (567)
Q Consensus 91 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k-~~~~ 169 (567)
||||++|||||||||++|+++++++.. .+.+||||++||+||+++++++|+++.++.|+++||+ +|||+|.+ +.++
T Consensus 1 rIaIltsGG~apG~Na~i~~vv~~a~~--~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt-~LgtsR~~~~~~~ 77 (301)
T TIGR02482 1 KIGILTSGGDAPGMNAAIRAVVRTAIY--HGFEVYGIRRGYKGLINGEIKPLESKNVSGIIHRGGT-ILGTARCPEFKTE 77 (301)
T ss_pred CEEEEccCCCcHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHhcCCCeEeCCHHHHhhHHhCCCc-eeccCCCCccCCH
Confidence 699999999999999999999998653 4789999999999999999999999999999999998 99999986 6678
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHHHH
Q 042388 170 EQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIG 249 (567)
Q Consensus 170 e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~ 249 (567)
+++++++++|++++||+||+||||||+++|+.|+|++ +++||||||||||||+++| +|||||||+++++++|+
T Consensus 78 ~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~-----~i~vigiPkTIDNDl~~td--~s~GfdTA~~~~~~~i~ 150 (301)
T TIGR02482 78 EGRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEEG-----GIPVIGLPGTIDNDIPGTD--YTIGFDTALNTIIDAVD 150 (301)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhh-----CCCEEeecccccCCCcCcc--cCcChhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999974 6899999999999999888 59999999999999999
Q ss_pred HHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEeC
Q 042388 250 NVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVILIPE 329 (567)
Q Consensus 250 ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~E 329 (567)
+++.+|.|++ +|||||+|||+||||||+||||++||+|||||++++ .+.+++.|++|.++|++|++|||+|
T Consensus 151 ~i~~ta~s~~-rv~ivEvMGR~~G~lAl~~~la~gad~iliPE~~~~--------~~~l~~~i~~r~~~g~~~~iIvvaE 221 (301)
T TIGR02482 151 KIRDTATSHE-RAFVIEVMGRHAGDLALYSGIATGAEIIIIPEFDYD--------IDELIQRLKEQHEAGKKHSIIIVAE 221 (301)
T ss_pred HHHHHhhcCC-CEEEEEeCCCCHHHHHHHHHHHcCCCEEEECCCCCC--------HHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9987788875 599999999999999999999999999999999873 3566778899999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHHHH
Q 042388 330 GLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIETEKMLIQMVE 409 (567)
Q Consensus 330 Gl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~lV~ 409 (567)
|+... . ...|+++++
T Consensus 222 G~~~~--~---------------------------------------------------------------~~~l~~~l~ 236 (301)
T TIGR02482 222 GNIVG--S---------------------------------------------------------------AKEVAKKIE 236 (301)
T ss_pred CCcCC--c---------------------------------------------------------------HHHHHHHHH
Confidence 95310 0 011333333
Q ss_pred HHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEeccchH
Q 042388 410 TELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGNLGEPVEEWTVGGTALT 489 (567)
Q Consensus 410 ~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~l~~~~~~w~~~~vPL~ 489 (567)
++ .++++|...+||.||||.||+||+.+|++||..|++++.+|.+|+|+++++.+ +..+||.
T Consensus 237 ~~-----------~g~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~~~mv~~~~~~-------~~~~p~~ 298 (301)
T TIGR02482 237 EA-----------TGIETRVTVLGHTQRGGSPTAFDRVLASRLGAKAVELLLEGKGGVMIGIQNNK-------IVTHPIE 298 (301)
T ss_pred Hh-----------cCCeeEEeecChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCE-------EEEeeHH
Confidence 22 24678899999999999999999999999999999999999999999999975 7889988
Q ss_pred hH
Q 042388 490 SL 491 (567)
Q Consensus 490 ~~ 491 (567)
++
T Consensus 299 ~~ 300 (301)
T TIGR02482 299 EA 300 (301)
T ss_pred Hh
Confidence 75
No 19
>PRK14071 6-phosphofructokinase; Provisional
Probab=100.00 E-value=8.7e-76 Score=619.02 Aligned_cols=323 Identities=25% Similarity=0.399 Sum_probs=285.0
Q ss_pred CCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCC--CEEEcCccccccccccCCcccccccCC-
Q 042388 88 KSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKC--KYVELSTEYIYPYRNQGGFDMICSGRD- 164 (567)
Q Consensus 88 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~--~~~eLt~~~v~~~~n~GG~~~LGS~R~- 164 (567)
+.+||||++|||||||||++|+|+++++.. +++.+||||++||.||+++ ++++|++++++.|.++||+ +|||||.
T Consensus 3 ~~~~I~IltsGG~apGmNa~i~~vv~~a~~-~~g~~v~G~~~G~~GL~~~~~~~~~l~~~~v~~~~~~GGt-~LgtsR~~ 80 (360)
T PRK14071 3 EKKRIGILTSGGDCAGLNAVIRAVVHRARG-TYGWEVIGIRDATQGLMARPPQYIELDLDQVDDLLRMGGT-ILGTTNKG 80 (360)
T ss_pred CCCEEEEECCCCCchhHHHHHHHHHHHHHh-cCCCEEEEEecChHHHhcCCCCeEECCHHHHhhHHhCCCc-eeccCCCC
Confidence 368999999999999999999999998642 3478999999999999999 8999999999999999998 9999972
Q ss_pred C-CC-------ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCC
Q 042388 165 K-IE-------TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFG 236 (567)
Q Consensus 165 k-~~-------~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~G 236 (567)
. +. .++.+++++++|++++||+||+||||||++.|+.|++. .+++||||||||||||+++| +|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~-----~~i~vIgiPkTIDNDl~~td--~t~G 153 (360)
T PRK14071 81 DPFAFPMPDGSLRDRSQEIIDGYHSLGLDALIGIGGDGSLAILRRLAQQ-----GGINLVGIPKTIDNDVGATE--VSIG 153 (360)
T ss_pred CccccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHh-----cCCcEEEecccccCCCcCcc--cCcC
Confidence 2 11 25678999999999999999999999999999999873 26899999999999999988 5999
Q ss_pred hHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHHHHHH
Q 042388 237 FDTACKIFSEMIGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRS 316 (567)
Q Consensus 237 FdTA~k~~ae~I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~ 316 (567)
||||+++++++|++++.+|.|++| |||||||||+||||||++|||++||+|||||.++ ++ +.+++.|++|+
T Consensus 154 f~TA~~~~~~~id~i~~ta~s~~r-v~ivEvMGR~~G~LAl~~~la~ga~~iliPE~~~----~~----~~l~~~i~~~~ 224 (360)
T PRK14071 154 FDTAVNIATEALDRLHFTAASHNR-VMILEVMGRDAGHIALAAGIAGGADVILIPEIPY----TL----ENVCKKIRERQ 224 (360)
T ss_pred hhHHHHHHHHHHHHHHhhhcccCC-EEEEEECCCCccHHHHHhHhhcCCCEEEECCCCC----CH----HHHHHHHHHHH
Confidence 999999999999999999998865 7999999999999999999999999999999986 33 55667788999
Q ss_pred HcCCCeEEEEEeCCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcccc
Q 042388 317 EAGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVA 396 (567)
Q Consensus 317 ~~gk~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls 396 (567)
+++++|+||||+||+.+ ++|.. ..++|++||++++
T Consensus 225 ~~~~~~~iivvsEG~~~----------------------~~g~~-----------------------~~~~d~~g~~~~~ 259 (360)
T PRK14071 225 EEGKNFCLVVVSEAVRT----------------------EEGEQ-----------------------VTKTQALGEDRYG 259 (360)
T ss_pred HcCCCeEEEEEcCCCcc----------------------ccccc-----------------------ccccccccccccC
Confidence 99999999999999853 12211 1237999999998
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCC
Q 042388 397 KIETEKMLIQMVETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGNLGE 476 (567)
Q Consensus 397 ~i~te~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~l~~ 476 (567)
++ .++|+++|++++ ++++|...+||.||||.||+||+.+|++||..|++++.+|+||+|+++++.+
T Consensus 260 ~~--~~~l~~~i~~~~-----------g~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~G~t~~mv~~~~~~- 325 (360)
T PRK14071 260 GI--GQYLAEQIAERT-----------GAETRVTVLGHIQRGGIPSPRDRLLASAFGVAAVDLIAQGKFDRMVAWQNRQ- 325 (360)
T ss_pred cH--HHHHHHHHHHhc-----------CCCeeEEecChhhcCCCCChHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCE-
Confidence 85 566777665553 3677889999999999999999999999999999999999999999999874
Q ss_pred CccceEEeccchHhHHH
Q 042388 477 PVEEWTVGGTALTSLMD 493 (567)
Q Consensus 477 ~~~~w~~~~vPL~~~~~ 493 (567)
+..+||.++++
T Consensus 326 ------~~~vpl~~v~~ 336 (360)
T PRK14071 326 ------VVSVPIAEAIA 336 (360)
T ss_pred ------EEEEeHHHHhc
Confidence 88999999987
No 20
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=1.1e-75 Score=628.73 Aligned_cols=350 Identities=26% Similarity=0.334 Sum_probs=304.7
Q ss_pred CCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccC---CCEEEcCccccccccccCCcccccccCC
Q 042388 88 KSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMK---CKYVELSTEYIYPYRNQGGFDMICSGRD 164 (567)
Q Consensus 88 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~---~~~~eLt~~~v~~~~n~GG~~~LGS~R~ 164 (567)
...|||||||||+|||||+||++++..+...+...+||||++||+||++ +++++||++.++.|.++||+ +|||||.
T Consensus 79 ~~~riaIvtsGG~~PGmN~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~~~~~~~Lt~~~v~~i~~~GGT-iLGTsR~ 157 (443)
T PRK06830 79 SKVKAAIVTCGGLCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPEVVADIHEFGGT-ILGSSRG 157 (443)
T ss_pred cccEEEEECCCCCchHHHHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhccCCCEEECCHHHHhhHHhCCCc-cccCCCC
Confidence 4589999999999999999999999997655556899999999999998 89999999999999999997 9999997
Q ss_pred CCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHH
Q 042388 165 KIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIF 244 (567)
Q Consensus 165 k~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ 244 (567)
+. ++++++++|++++||+||+||||||+++|+.|+|+++++|++++|||||||||||++++| +|||||||++++
T Consensus 158 ~~----~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td--~S~GFdTAv~~a 231 (443)
T PRK06830 158 PQ----DPEEIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQ--KSFGFETAVEKA 231 (443)
T ss_pred ch----hHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcc--cCCCHHHHHHHH
Confidence 53 689999999999999999999999999999999999999999999999999999999877 599999999999
Q ss_pred HHHHHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhc-CCcEEEECCcchhhhcchHhHHHHHHHHHHHHHHcCCCeE
Q 042388 245 SEMIGNVMTDARSTGKYYHFVRLMGRAASHITLECALQT-HPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYG 323 (567)
Q Consensus 245 ae~I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat-~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~g 323 (567)
+++|++++.||.|++++|+|||+|||+|||||+++||++ +||+|||||.++ +|+. ...+++.|++|.+. ++|+
T Consensus 232 ~~aI~~~~~eA~s~~~rv~iVEvMGR~sG~lA~~aaLA~~~ad~ilIPE~~f----~l~~-~~~ll~~l~~r~~~-~~~~ 305 (443)
T PRK06830 232 TEAIRCAHVEANGAPNGIGLVKLMGRHSGFIAAYAALASKDVNFVLIPEVPF----DLEG-PNGLLAALEKRLAE-RGHA 305 (443)
T ss_pred HHHHHHHHHHHHHhCCcEEEEEECCCcccHHHHHHHHhcCCCCEEEecCCCC----Cchh-HHHHHHHHHHHHHh-CCce
Confidence 999999999999998889999999999999999999998 799999999997 4443 24667788888866 9999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcccchhhhHHH
Q 042388 324 VILIPEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIETEKM 403 (567)
Q Consensus 324 vIli~EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~l 403 (567)
||||+||+...+.+ + ...+|++||+++.++ ..+
T Consensus 306 VIVVAEGag~~l~~--------------------------------------------~-~~~~Da~gn~~l~~i--g~~ 338 (443)
T PRK06830 306 VIVVAEGAGQELFD--------------------------------------------D-TGETDASGNPKLGDI--GLF 338 (443)
T ss_pred EEEEecCccccccc--------------------------------------------c-cccccccCCcccccH--HHH
Confidence 99999998432110 0 124799999999886 567
Q ss_pred HHHHHHHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEE
Q 042388 404 LIQMVETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGNLGEPVEEWTV 483 (567)
Q Consensus 404 L~~lV~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~l~~~~~~w~~ 483 (567)
|++.++++++++. ..++.++..+||+|||+.||++|+.||+.||..|++++++|+||+|+++++.+ +
T Consensus 339 L~~~i~~~~~~~~------~~~~~r~~~pgy~qRg~~psa~Dr~~a~~lG~~AV~~~~~G~tg~~Vg~~~~~-------~ 405 (443)
T PRK06830 339 LKDRIKEYFKARG------IPINLKYIDPSYIIRSVPANANDSVYCGFLGQNAVHAAMAGKTGMVVGRWNNR-------F 405 (443)
T ss_pred HHHHHHHHhcccC------CceEEEEccCCccccCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCE-------E
Confidence 8887777765432 23567788999999999999999999999999999999999999999999974 8
Q ss_pred eccchHhHHHHHHhcCCcccccchhhhccCCchhHHHHH
Q 042388 484 GGTALTSLMDVERRHGKFKPVIKKAMVELEGIPFKTFAS 522 (567)
Q Consensus 484 ~~vPL~~~~~~e~~~g~~~p~i~~~~v~l~~~~f~~~~~ 522 (567)
..+||.++++.+ ..||.+|..++...+
T Consensus 406 ~~vPl~~v~~~~------------k~vd~~~~~w~~~l~ 432 (443)
T PRK06830 406 VHLPIDLAVSKR------------KKVNPEGDLWRSVLE 432 (443)
T ss_pred EEEeHHHHhccC------------CCCCCccHHHHHHHH
Confidence 899999988532 234556666655433
No 21
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=100.00 E-value=7.6e-76 Score=609.68 Aligned_cols=301 Identities=30% Similarity=0.428 Sum_probs=269.8
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCC-CCC
Q 042388 90 LKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDK-IET 168 (567)
Q Consensus 90 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k-~~~ 168 (567)
+||||++|||||||||++|+|+++++. +.+.+||||++||+||+++++++|+++.++.|+++||+ +|||+|+. +.+
T Consensus 1 ~~IaIltsGG~apGmNa~i~~vv~~a~--~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt-~LgtsR~~~~~~ 77 (317)
T cd00763 1 KRIGVLTSGGDAPGMNAAIRGVVRSAI--AEGLEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGT-FLGSARFPEFKD 77 (317)
T ss_pred CEEEEEccCCCcHHHHHHHHHHHHHHH--HCCCEEEEEecCHHHhcCCCeEeCCHHHhhhHHhCCCe-eeccCCCCccCC
Confidence 589999999999999999999999854 46889999999999999999999999999999999998 99999974 667
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHHH
Q 042388 169 PEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMI 248 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I 248 (567)
++++++++++|++++||+||+||||||+++|+.|+|+ +++|||||||||||+++|| +|||||||+++++++|
T Consensus 78 ~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~------~i~vigiPkTIDNDi~gtd--~t~Gf~TA~~~~~~~i 149 (317)
T cd00763 78 EEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEH------GFPCVGLPGTIDNDIPGTD--YTIGFDTALNTVVEAI 149 (317)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHc------CCCEEEecccccCCCCCCc--cCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999986 5899999999999999988 5999999999999999
Q ss_pred HHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEe
Q 042388 249 GNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVILIP 328 (567)
Q Consensus 249 ~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~ 328 (567)
++++.++.|+ ++|||||+|||+|||||++||||++||+|||||+++ ++ +++++.|++|+++|++|+|||++
T Consensus 150 ~~i~~ta~s~-~rv~ivEvMGR~~G~LA~~~ala~ga~~iliPE~~~----~~----~~~~~~i~~~~~~g~~~~vivva 220 (317)
T cd00763 150 DRIRDTSSSH-QRISVVEVMGRHCGDIALAAGIAGGAEFIVIPEAEF----DR----EEVANRIKAGIERGKKHAIVVVA 220 (317)
T ss_pred HHHHHHHhcC-CCEEEEEeCCCChHHHHHHHHHHcCCCEEEeCCCCC----CH----HHHHHHHHHHHHcCCCcEEEEEe
Confidence 9998666665 569999999999999999999999999999999987 44 45566678888889999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHHH
Q 042388 329 EGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIETEKMLIQMV 408 (567)
Q Consensus 329 EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~lV 408 (567)
||+.+- ..|++++
T Consensus 221 EG~~~~-------------------------------------------------------------------~~l~~~l 233 (317)
T cd00763 221 EGVYDV-------------------------------------------------------------------DELAKEI 233 (317)
T ss_pred CCCCCH-------------------------------------------------------------------HHHHHHH
Confidence 997420 0133333
Q ss_pred HHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEeccch
Q 042388 409 ETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGNLGEPVEEWTVGGTAL 488 (567)
Q Consensus 409 ~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~l~~~~~~w~~~~vPL 488 (567)
++++ .+++|...+||.||||.||+||+.+|++||..|++++.+|++|+|+++++.+ +..+||
T Consensus 234 ~~~~-----------g~~~r~~~lG~~qRgg~p~~~Dr~~a~~lg~~Av~~~~~g~~~~mv~~~~~~-------~~~~pl 295 (317)
T cd00763 234 EEAT-----------GFETRATVLGHIQRGGSPTAFDRILASRMGAYAVELLLAGKGGLAVGIQNEQ-------LVHHDI 295 (317)
T ss_pred HHHh-----------CCCcceeccchhhcCCCCChhhHHHHHHHHHHHHHHHHcCCCCeEEEEECCE-------EEEecH
Confidence 3332 3667889999999999999999999999999999999999999999999974 889999
Q ss_pred HhHHHHH
Q 042388 489 TSLMDVE 495 (567)
Q Consensus 489 ~~~~~~e 495 (567)
.++++.+
T Consensus 296 ~~~~~~~ 302 (317)
T cd00763 296 IDAIENM 302 (317)
T ss_pred HHHhhCC
Confidence 9998754
No 22
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=100.00 E-value=1.2e-75 Score=620.04 Aligned_cols=336 Identities=21% Similarity=0.239 Sum_probs=290.4
Q ss_pred CcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCcc---ccccccccCCcccccccCCC
Q 042388 89 SLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTE---YIYPYRNQGGFDMICSGRDK 165 (567)
Q Consensus 89 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~---~v~~~~n~GG~~~LGS~R~k 165 (567)
.+||||++|||||||||++|+|+++++...+++.+||||++||+||+++++++|++. .++.++++||+ +|||||++
T Consensus 3 ~k~i~IltsGGdapGmNaaI~~vv~~a~~~~~~~~V~G~~~G~~GL~~~~~~~l~~~~~~~~~~i~~~GGt-~LGtsR~~ 81 (403)
T PRK06555 3 VKKVALLTAGGLAPCLSSAVGGLIERYTEIAPEVEIIAYRSGYQGLLLGDSIEITPAVRANAGLLHRYGGS-PIGNSRVK 81 (403)
T ss_pred cCEEEEECCCCCchhHHHHHHHHHHHHHhhcCCcEEEEEecCHHHhcCCCceeCChhHhhhhhHHHhCCCc-eeccCCCC
Confidence 479999999999999999999999987666678999999999999999999999985 34558999998 99999987
Q ss_pred CC-------------ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCC
Q 042388 166 IE-------------TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVP 232 (567)
Q Consensus 166 ~~-------------~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie 232 (567)
+. .++.+++++++|++++||+||+||||||+++|+.|++++.++|++++||||||||||||.++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~- 160 (403)
T PRK06555 82 LTNVADCVKRGLVKEGENPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQ- 160 (403)
T ss_pred ccccchhccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccC-
Confidence 62 2567899999999999999999999999999999999999999999999999999999999885
Q ss_pred CCCChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhh--------------------cCCcEEEECC
Q 042388 233 TSFGFDTACKIFSEMIGNVMTDARSTGKYYHFVRLMGRAASHITLECALQ--------------------THPNITIIGE 292 (567)
Q Consensus 233 ~S~GFdTA~k~~ae~I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLa--------------------t~pnivlIpE 292 (567)
|||||||+++++++|++|+.||.|++++++|||||||+|||||+.+||+ ++||+|||||
T Consensus 161 -t~Gf~TA~~~~~~ai~~l~~ta~s~~r~~~vvEvMGR~aG~LAl~aalA~~~~~~~~~~~~~~~~~~~~~gad~ilIPE 239 (403)
T PRK06555 161 -SLGAWTAAEQGARFFDNVINEHSANPRMLIIHEVMGRNCGWLTAATARAYREWLDRQEYVPGFGLSAERWDIHAVYLPE 239 (403)
T ss_pred -CcCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEccCCchHHHHHHHHHhhccccccccccccccccccCCCCcEEEccC
Confidence 9999999999999999999999999987666699999999999999999 7899999999
Q ss_pred cchhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHH
Q 042388 293 EVAAKKQTLKNVTDYITDIICKRSEAGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELF 372 (567)
Q Consensus 293 e~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf 372 (567)
.+++ + +.+++.|+++.+. ++|+||+|+||+..-++. +++ .++|+
T Consensus 240 ~~~~----~----e~~~~~ik~~~~~-k~~~iIvVaEG~~~~~~~-----~~~---------~~~g~------------- 283 (403)
T PRK06555 240 MAFD----L----EAEAERLKAVMDE-VGNVNIFLSEGAGLDAIV-----AEM---------EAAGE------------- 283 (403)
T ss_pred CCCC----H----HHHHHHHHHHHHh-CCCEEEEEeCCCCcccch-----hhh---------hhccC-------------
Confidence 9874 3 4566777777766 999999999998532110 000 01111
Q ss_pred hhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHHHHHHHHHhhhcCCcCcccc-cceecCcccccCCCCCHHHHHHHHH
Q 042388 373 ELFPKAIQEQLLLERDPHGNVQVAKIETEKMLIQMVETELNKMKQKGAYKGQFN-GQSHFFGYEGRCGLPTNFDANYCYA 451 (567)
Q Consensus 373 ~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~lV~~~L~~r~~~~~y~~~f~-~~~~~~Gy~~R~~~PS~fD~~~a~~ 451 (567)
...+|++||+++..++..+.|++.|++++. ++ +|...+||+||||.||.||+.+|++
T Consensus 284 -----------~~~~Da~G~~~l~~~~~g~~la~~i~~~~g-----------~e~~r~~~lGy~qRgg~psa~Dr~la~~ 341 (403)
T PRK06555 284 -----------EVKRDAFGHVKLDTINPGAWFAKQFAELLG-----------AEKVMVQKSGYFARSAPANAEDLRLIKS 341 (403)
T ss_pred -----------ccccccccceecCCCcHHHHHHHHHHHHhC-----------CCceEEecCChhhcCCCCCHHHHHHHHH
Confidence 125799999999998777778888777653 33 6789999999999999999999999
Q ss_pred HHHHHHHHHHcCCCceEEEE---ecCCCCccceEEeccchHhHHH
Q 042388 452 LGYAAAALLHAGKTGLISSV---GNLGEPVEEWTVGGTALTSLMD 493 (567)
Q Consensus 452 lG~~Av~li~~g~tG~mv~i---~~l~~~~~~w~~~~vPL~~~~~ 493 (567)
||..||+++.+|.+| |+++ +|.+ +..+||.+++.
T Consensus 342 lG~~AV~~~~~G~sg-~v~~~~~~~g~-------~~~vp~~~~~~ 378 (403)
T PRK06555 342 MVDLAVECALRGVSG-VIGHDEEQGGK-------LRAIEFPRIKG 378 (403)
T ss_pred HHHHHHHHHHCCCCC-eEEEEeeeCCE-------EEEEEHHHHhc
Confidence 999999999999999 5666 6764 88999999765
No 23
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=8.3e-73 Score=640.17 Aligned_cols=351 Identities=22% Similarity=0.294 Sum_probs=302.3
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCC--CEEEcCccccccccccCCcccccccCCC-C
Q 042388 90 LKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKC--KYVELSTEYIYPYRNQGGFDMICSGRDK-I 166 (567)
Q Consensus 90 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~--~~~eLt~~~v~~~~n~GG~~~LGS~R~k-~ 166 (567)
+||||++|||||||||++|+++++.+ .+.+.+||||++||+||+++ ++++|+|++++.|.++||+ +|||+|++ +
T Consensus 1 krIaIltsGGdapGmNaaIravv~~a--~~~g~~V~gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt-~LGtsR~~~~ 77 (745)
T TIGR02478 1 KRIGVLTSGGDAQGMNAAVRAVVRMA--IYVGCRVYAIREGYQGLVDGGDNIEEANWEDVRGILSLGGT-IIGTARCKEF 77 (745)
T ss_pred CEEEEEecCCCcHHHHHHHHHHHHHH--HHCCCEEEEEecCHHHHhcCCCCeEECCHHHHhhHHhCCCc-eecCCCCCcc
Confidence 58999999999999999999999984 55689999999999999999 9999999999999999997 99999998 5
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHH-----------------HhcCCCCccEEEecccCcCCCCCC
Q 042388 167 ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAEN-----------------FRSKDMKTRVIGCPKTIDGDLKCK 229 (567)
Q Consensus 167 ~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~-----------------~~~~g~~i~VIgVPKTIDNDL~~~ 229 (567)
.+++.+++++++|++++||+||+||||||+++|+.|+++ .++++.+++|||||||||||+++|
T Consensus 78 ~~~~~~~~~~~~L~~~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gT 157 (745)
T TIGR02478 78 RERPGRLKAARNLIKRGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGT 157 (745)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCC
Confidence 677889999999999999999999999999999987763 244566899999999999999999
Q ss_pred CCCCCCChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHH
Q 042388 230 EVPTSFGFDTACKIFSEMIGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIT 309 (567)
Q Consensus 230 ~ie~S~GFdTA~k~~ae~I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~ 309 (567)
|+ |||||||+++++++|+++..+|.|++| |||||||||+||||||++|||++||+|||||++++.+ ..++||
T Consensus 158 d~--TiGfdTA~~~i~~aid~i~~ta~Sh~R-~fvvEvMGR~~G~LAl~aalA~gad~iliPE~~~~~~-----~~~~i~ 229 (745)
T TIGR02478 158 DM--TIGADSALHRICEAIDAISSTAQSHQR-AFVVEVMGRHCGYLALMAAIATGADYVFIPERPPEEG-----WEDQLC 229 (745)
T ss_pred cC--CCCHHHHHHHHHHHHHHHHhhhhccCC-EEEEEEcCccccHHHHHHHhccCCCEEEecCCCCCch-----HHHHHH
Confidence 85 999999999999999999999999865 7999999999999999999999999999999998643 477888
Q ss_pred HHHHHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCC
Q 042388 310 DIICKRSEAGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDP 389 (567)
Q Consensus 310 d~I~~R~~~gk~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~ 389 (567)
+.++++...|++|+||||+||+.+ .
T Consensus 230 ~~l~~~~~~gk~~~iIvvaEG~~d-------------------------------------------------------~ 254 (745)
T TIGR02478 230 HKLKRNRKAGKRKNIVIVAEGAID-------------------------------------------------------R 254 (745)
T ss_pred HHHHHHHHcCCCcEEEEEeCCccc-------------------------------------------------------c
Confidence 999999899999999999999863 1
Q ss_pred CCCcccchhhhHHHHHHHHHHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC---c
Q 042388 390 HGNVQVAKIETEKMLIQMVETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKT---G 466 (567)
Q Consensus 390 ~Gn~~ls~i~te~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~t---G 466 (567)
+||... .+.|++++++++ ++++|...+||.||||.||+||+.+|++||..|++++.+|.+ |
T Consensus 255 ~g~~i~-----~~~l~~~l~~~~-----------g~~~R~~~LGh~QRgg~Psa~Dr~la~~~G~~Av~~~~~g~~~~~~ 318 (745)
T TIGR02478 255 DLNPIT-----SEDVKDVLVERL-----------GLDTRITVLGHVQRGGAPSAYDRILATRQGVEAVLAVLESTPETPS 318 (745)
T ss_pred cCCccc-----HHHHHHHHHHhc-----------CCceEEeecChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 233211 123444443332 467899999999999999999999999999999999999987 9
Q ss_pred eEEEEecCCCCccceEEeccchHhHHHHHHhcCCc---ccccchhhhccCCchhHHHHHhhccccccC
Q 042388 467 LISSVGNLGEPVEEWTVGGTALTSLMDVERRHGKF---KPVIKKAMVELEGIPFKTFASLREDWTIKN 531 (567)
Q Consensus 467 ~mv~i~~l~~~~~~w~~~~vPL~~~~~~e~~~g~~---~p~i~~~~v~l~~~~f~~~~~~r~~w~~~d 531 (567)
+|+++++ |++..+||.++++.+|...+. +-+ ..-++|.|..|...-..-..-...+
T Consensus 319 ~mv~~~~-------~~~~~~pl~~~~~~~k~v~~~~~~~~~--~~a~~~r~~~f~~~~~~~~~~~~~~ 377 (745)
T TIGR02478 319 PVISLRG-------NKIVRKPLVEAVAQTKTVAKAIKEKRF--AEAMRLRGREFVENLATFLFLSIPD 377 (745)
T ss_pred EEEEEEC-------CEEEEEeHHHHHhhcCCCCHHHHhccH--HHHHHhcCHHHHHHHHHHHhhhccC
Confidence 9999998 459999999999987765542 222 4556899999987655544444443
No 24
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=5.8e-72 Score=630.64 Aligned_cols=351 Identities=23% Similarity=0.283 Sum_probs=299.9
Q ss_pred CCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCC--CEEEcCccccccccccCCcccccccCCC
Q 042388 88 KSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKC--KYVELSTEYIYPYRNQGGFDMICSGRDK 165 (567)
Q Consensus 88 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~--~~~eLt~~~v~~~~n~GG~~~LGS~R~k 165 (567)
..+||||++|||||||||++|+++++++ .+.+.+||||++||+||+++ ++++|+|++++.|.++||+ +|||+|++
T Consensus 2 ~~k~IaIltSGGdapGmNaaIravvr~a--~~~g~~V~gi~~Gy~GL~~g~~~i~~l~~~~V~~i~~~GGT-~LGTsR~~ 78 (762)
T cd00764 2 AGKAIAVLTSGGDAQGMNAAVRAVVRMG--IYVGAKVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQEGGT-IIGSARCK 78 (762)
T ss_pred CCcEEEEEccCCCchhHhHHHHHHHHHH--HHCCCEEEEEecCHHHHhCCCCCceeCCHHHHHHHHhCCCC-cccCCCCC
Confidence 4589999999999999999999999984 56789999999999999999 7999999999999999997 99999987
Q ss_pred -CCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHH-------HH----------HhcCCCCccEEEecccCcCCCC
Q 042388 166 -IETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLA-------EN----------FRSKDMKTRVIGCPKTIDGDLK 227 (567)
Q Consensus 166 -~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~La-------e~----------~~~~g~~i~VIgVPKTIDNDL~ 227 (567)
+.+++++++++++|++++||+||+||||||+++|..|+ ++ ..+++..++|||||||||||++
T Consensus 79 ~f~~~e~~~~a~~~L~~~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~ 158 (762)
T cd00764 79 EFREREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFC 158 (762)
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCC
Confidence 56778999999999999999999999999999999775 22 2345568999999999999999
Q ss_pred CCCCCCCCChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHH
Q 042388 228 CKEVPTSFGFDTACKIFSEMIGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDY 307 (567)
Q Consensus 228 ~~~ie~S~GFdTA~k~~ae~I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~ 307 (567)
+||+ |||||||+++++++|++|..||.||+| +||||||||+||||||++|||++||+|||||.++. ++..++
T Consensus 159 gTD~--TiGfdTAl~~i~eaId~i~~tA~Sh~R-~fVVEvMGR~~G~LAl~aglA~gAd~ilIPE~p~~-----~~~~~~ 230 (762)
T cd00764 159 GTDM--TIGTDSALHRICEVVDAITTTAQSHQR-TFVLEVMGRHCGYLALVSGLATGADWIFIPERPPE-----DGWEDQ 230 (762)
T ss_pred CCcC--CCCHHHHHHHHHHHHHHHHHHHHhcCC-EEEEEECCCCchHHHHHHHhccCCCEEEecCCCCc-----hhHHHH
Confidence 9995 999999999999999999999999976 79999999999999999999999999999999985 345788
Q ss_pred HHHHHHHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcC
Q 042388 308 ITDIICKRSEAGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLER 387 (567)
Q Consensus 308 i~d~I~~R~~~gk~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~r 387 (567)
||+.+.+|+..||+|+||||+||+.+.
T Consensus 231 i~~~l~~~~~~gk~~~iIVVaEGa~d~----------------------------------------------------- 257 (762)
T cd00764 231 MCRRLSEHRSRGKRLNIIIVAEGAIDD----------------------------------------------------- 257 (762)
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCCccc-----------------------------------------------------
Confidence 999999999999999999999998641
Q ss_pred CCCCCcccchhhhHHHHHHHHHHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC--
Q 042388 388 DPHGNVQVAKIETEKMLIQMVETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKT-- 465 (567)
Q Consensus 388 D~~Gn~~ls~i~te~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~t-- 465 (567)
.|+.. ++..|++.+++++ ++++|...+||.||||.||+|||.||++||..|++++.+|.+
T Consensus 258 --~g~~i-----~~~~l~~~l~~~~-----------g~d~R~t~LGh~QRGG~Psa~Dr~la~~~G~~AV~~l~~g~~~~ 319 (762)
T cd00764 258 --QLKPI-----TSEDVKDLVVERL-----------GLDTRVTTLGHVQRGGTPSAFDRILASLMGVEAVMALLEATPDT 319 (762)
T ss_pred --cCCCc-----cHHHHHHHHHHhc-----------CCCeeEeecChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 12211 1123444443332 478899999999999999999999999999999999999986
Q ss_pred -ceEEEEecCCCCccceEEeccchHhHHHHHHhcCCc---ccccchhhhccCCchhHHHHHhhccccc
Q 042388 466 -GLISSVGNLGEPVEEWTVGGTALTSLMDVERRHGKF---KPVIKKAMVELEGIPFKTFASLREDWTI 529 (567)
Q Consensus 466 -G~mv~i~~l~~~~~~w~~~~vPL~~~~~~e~~~g~~---~p~i~~~~v~l~~~~f~~~~~~r~~w~~ 529 (567)
++|+++++.+ +..+||.++++..+...+. |-+ ..-++|.|..|...-.....-..
T Consensus 320 ~~~~i~~~~~~-------i~~~pl~e~v~~~k~v~~~~~~~~~--~~a~~lr~~~f~~~~~~~~~~~~ 378 (762)
T cd00764 320 PACVVSLNGNK-------AVRLPLMECVQLTKDVQKAMDEKRF--DEAAALRGKSFDKNWNLYKLLAI 378 (762)
T ss_pred CCEEEEEECCE-------EEEEEHHHHHhhccchhhhhhhhhH--HHHHHhcchhHHHHHHHHHhccc
Confidence 8999999975 8899999999876654321 222 34457888888876555444333
No 25
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=100.00 E-value=7.4e-72 Score=572.41 Aligned_cols=281 Identities=36% Similarity=0.523 Sum_probs=248.0
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCC-CCC
Q 042388 90 LKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDK-IET 168 (567)
Q Consensus 90 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k-~~~ 168 (567)
|||||++|||||||||++|+|+++++ ...+++||||++||+||+++++++|++++++.|+++||+ +|||+|++ +.+
T Consensus 1 KrI~Il~sGG~apG~Na~i~~~v~~a--~~~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt-~lgtsR~~~~~~ 77 (282)
T PF00365_consen 1 KRIAILTSGGDAPGMNAAIRGVVRYA--IRRGWEVYGIRNGFEGLLNGDIIELTWEDVRGIINQGGT-ILGTSRFKPFKD 77 (282)
T ss_dssp EEEEEEEESS--TTHHHHHHHHHHHH--HHTTSEEEEETTHHHHHHHCTEEEECGGGGTTGGGSSSS-TTTBBBSSGGGS
T ss_pred CeEEEEecCCCchhhhHHHHHHHHHH--HhcCCEEEEEEccCccceeeeEEeecccCccccccCCCc-EeCcccCccccc
Confidence 69999999999999999999999985 457899999999999999999999999999999999998 99999987 667
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHHH
Q 042388 169 PEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMI 248 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I 248 (567)
++.+++++++|++++||+||+||||||+++|+.|+|++. ++|||||||||||++++| +|||||||+++++++|
T Consensus 78 ~~~~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L~~~~~-----i~vigiPkTIDNDi~gtd--~siGf~TA~~~~~~~i 150 (282)
T PF00365_consen 78 PEGRKKIVENLKKLGIDALIVIGGDGSMKGAHKLSEEFG-----IPVIGIPKTIDNDIPGTD--YSIGFDTAVNYIAEAI 150 (282)
T ss_dssp HHHHHHHHHHHHHTTESEEEEEESHHHHHHHHHHHHHHH-----SEEEEEEEETTSSCTTSS--S-BTHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCc-----eEEEEEeccccCCcCCCC--CCcccCchhHHHHHHH
Confidence 888999999999999999999999999999999998763 899999999999999987 5999999999999999
Q ss_pred HHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEe
Q 042388 249 GNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVILIP 328 (567)
Q Consensus 249 ~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~ 328 (567)
++|+.+|.|+ ++|||||+|||+|||||++||||++||+|||||+++ ..+++++.|++|.+++++|++|||+
T Consensus 151 ~~i~~~a~s~-~rv~ivEvmGr~~G~LAl~~ala~~a~~ilipE~~~--------~~~~~~~~i~~~~~~~k~~~iVvvs 221 (282)
T PF00365_consen 151 DNIKTTARSH-NRVFIVEVMGRNAGWLALAAALATGADLILIPEEPF--------DLDELLDDIKKRYERGKRYGIVVVS 221 (282)
T ss_dssp HHHHHHHHHS-TEEEEEEESSTTSTHHHHHHHHHHTSSEEEBTTSHH--------HHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred HHHHHhhccc-CCceEEEeCCCCcCHHHHHHHhccCCCEEEEecccc--------chHHHHHHhhhhhcccCceEEEEec
Confidence 9999999887 469999999999999999999999999999999985 3678888999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHHH
Q 042388 329 EGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIETEKMLIQMV 408 (567)
Q Consensus 329 EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~lV 408 (567)
||+.+..|- ..+++
T Consensus 222 EG~~~~~~i------------------------------------------------------------------~~~~~ 235 (282)
T PF00365_consen 222 EGAKDGQPI------------------------------------------------------------------SSEFI 235 (282)
T ss_dssp TTSBSSHBH------------------------------------------------------------------HHHHH
T ss_pred ccccccccc------------------------------------------------------------------ccccc
Confidence 999752110 01112
Q ss_pred HHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHc
Q 042388 409 ETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHA 462 (567)
Q Consensus 409 ~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~ 462 (567)
++.++++ ..+++|...|||.||||.||+|||.+|.+||..|++++.+
T Consensus 236 ~~~~~~~-------~~~~~r~~~lGh~Qrgg~P~~~DR~la~~~g~~Av~~i~e 282 (282)
T PF00365_consen 236 KELLEEG-------LGFDVRVTILGHLQRGGTPSAFDRILATRFGIKAVEAILE 282 (282)
T ss_dssp HHHHHHT-------TTSEEEEEE-GGGGGTSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccc-------cccceeecccchhhcCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 2222221 2588999999999999999999999999999999999864
No 26
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=5.9e-70 Score=616.98 Aligned_cols=329 Identities=20% Similarity=0.289 Sum_probs=289.8
Q ss_pred CCCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCC
Q 042388 86 ENKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDK 165 (567)
Q Consensus 86 ~~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k 165 (567)
..+++||||++|||||||||++|+|+++++ .+.+.+||||++||.||+++++.+|++.+++.|+++||+ +|||+|..
T Consensus 386 ~~~~~rIaIltsGG~apGmNaair~vv~~a--~~~g~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt-~LgtsR~~ 462 (745)
T TIGR02478 386 KASRLRIAIIHVGAPAGGMNAATRSAVRYA--IARGHTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGS-ELGTNREL 462 (745)
T ss_pred CCCceEEEEEecCCCchhHHHHHHHHHHHH--HhCCCEEEEEecChhhhccCCeecCCHHHHHHHHhcCCc-ccccCCCC
Confidence 356699999999999999999999999985 456899999999999999999999999999999999998 99999985
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcC-CCCccEEEecccCcCCCCCCCCCCCCChHhHHHHH
Q 042388 166 IETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSK-DMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIF 244 (567)
Q Consensus 166 ~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~-g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ 244 (567)
. ++++++++++|++++||+||+||||||+++|.+|+++..+. +.+++||||||||||||+++|+ |||||||++++
T Consensus 463 ~--~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd~--t~GfdTA~~~~ 538 (745)
T TIGR02478 463 P--GKDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEY--SLGSDTALNEI 538 (745)
T ss_pred c--hhHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcc--CCCHHHHHHHH
Confidence 4 67899999999999999999999999999999999985433 3679999999999999999885 99999999999
Q ss_pred HHHHHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHHHHHHHcC-CCeE
Q 042388 245 SEMIGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAG-YNYG 323 (567)
Q Consensus 245 ae~I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~g-k~~g 323 (567)
+++|++|+.+|.|++++|||||+|||+|||||++||||++||+|||||+++ +++++.+.+ +.+.+|...+ ++++
T Consensus 539 ~~~id~i~~ta~s~~~rv~iVEvMGR~~G~LAl~~alA~gad~iliPE~~~----~~~~l~~~v-~~i~~~~~~~~~~~~ 613 (745)
T TIGR02478 539 TEYCDNIKQSASASKRRVFVVETMGGYSGYLATMAGLATGADAAYIPEEGI----SLKDLQEDI-EHLKEKFAHGNRAGK 613 (745)
T ss_pred HHHHHHHHHhhHhcCCcEEEEEecCccccHHHHHHHhhcCCCEEEeCCCCC----CHHHHHHHH-HHHHHHHhcCCCCce
Confidence 999999999999998789999999999999999999999999999999987 677776654 3477888888 8999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcccchhhhHHH
Q 042388 324 VILIPEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIETEKM 403 (567)
Q Consensus 324 vIli~EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~l 403 (567)
+|+++||+.+.. +...
T Consensus 614 iiv~~Eg~~~~~----------------------------------------------------------------~~~~ 629 (745)
T TIGR02478 614 LILRNENASKNY----------------------------------------------------------------TTDF 629 (745)
T ss_pred EEEEeCCCccCC----------------------------------------------------------------CHHH
Confidence 999999974310 0123
Q ss_pred HHHHHHHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcC------------CCceEEEE
Q 042388 404 LIQMVETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAG------------KTGLISSV 471 (567)
Q Consensus 404 L~~lV~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g------------~tG~mv~i 471 (567)
|+++++++++ ..|++|...+||.||||.||+||+.+|++||..|++++.+| .+|+|+++
T Consensus 630 l~~~i~~e~~---------~~~~~R~~~LG~~QRgg~ps~~Dr~~a~~lG~~Av~~~~~~~~~~~~~~~~~~~~~~~vg~ 700 (745)
T TIGR02478 630 IARIISEEAK---------GRFDARTAVLGHMQQGGSPSPFDRNRATRLAIRAVDFIEEKIKKSADKLGADDTSAVVIGI 700 (745)
T ss_pred HHHHHHHHhc---------CCCceEeccCCccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccccccccCCCccEEEEE
Confidence 5556655432 35889999999999999999999999999999999999998 79999999
Q ss_pred ecCCCCccceEEeccchHhHHH----HHHhcCCcccccc
Q 042388 472 GNLGEPVEEWTVGGTALTSLMD----VERRHGKFKPVIK 506 (567)
Q Consensus 472 ~~l~~~~~~w~~~~vPL~~~~~----~e~~~g~~~p~i~ 506 (567)
++.+ +..+||.++|+ ++.|.++..+|.+
T Consensus 701 ~~~~-------~~~~p~~~~~~~~~d~~~r~p~~~~w~~ 732 (745)
T TIGR02478 701 RGSN-------VLFTPVKGLLAKETDFEHRRPKNQWWLD 732 (745)
T ss_pred ECCE-------EEEEEHHHHHhhccCcccCCCCCchhhh
Confidence 9975 88999998664 5567788877764
No 27
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=3e-66 Score=584.36 Aligned_cols=329 Identities=19% Similarity=0.247 Sum_probs=285.2
Q ss_pred CCCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCC
Q 042388 86 ENKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDK 165 (567)
Q Consensus 86 ~~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k 165 (567)
..+++||||++|||||||||++|++++++ +...+.+||||++||+||+++++++|+|++++.|.++||+ +|||+|++
T Consensus 386 ~~~~~~IaIltsGG~apGmNaairavv~~--a~~~g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt-~LGT~R~~ 462 (762)
T cd00764 386 EKTNLNIAIVNVGAPAAGMNAAVRSAVRY--GLAHGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGS-ELGTKRTL 462 (762)
T ss_pred cccccEEEEEecCCCchhHHHHHHHHHHH--HHHCCCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcc-cccccCCC
Confidence 44568999999999999999999999988 4566899999999999999999999999999999999998 99999988
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcC-CCCccEEEecccCcCCCCCCCCCCCCChHhHHHHH
Q 042388 166 IETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSK-DMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIF 244 (567)
Q Consensus 166 ~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~-g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ 244 (567)
. ++++++++++|++++||+||+||||||+++|+.|+++..+. ...++|||||||||||+++||+ |||||||++++
T Consensus 463 ~--~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~--siGfdTAln~~ 538 (762)
T cd00764 463 P--KKDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDF--SLGSDTALNAL 538 (762)
T ss_pred c--HHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcC--CCCHHHHHHHH
Confidence 5 57899999999999999999999999999999999976443 3579999999999999999995 99999999999
Q ss_pred HHHHHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHHHHHHHcCCCeEE
Q 042388 245 SEMIGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGV 324 (567)
Q Consensus 245 ae~I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gv 324 (567)
+++|++|+.+|.|++++|||||||||+|||||+++||+++|++|||||++++.+. |..-++.+++.++++...|+.+.+
T Consensus 539 ~~~id~i~~tA~s~~~RvfVVEvMGR~~G~LA~~aglA~GAd~i~iPE~~~~~~~-l~~dv~~l~~~~~~~~~~g~~~~~ 617 (762)
T cd00764 539 MKYCDRIKQSASGTKRRVFIVETMGGYCGYLATMTGLAVGADAAYVFEEPFNIRD-LQENVEHLTEKMKTTIGRGLVLRN 617 (762)
T ss_pred HHHHHHHHHHHhhcCCeEEEEEeCCCCccHHHHHHHhhcCCCEEEeCCCCCCHHH-HHHHHHHHHHHHHHHHhcCCeEee
Confidence 9999999999999887899999999999999999999999999999999985432 222256678888888889999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcccchhhhHHHH
Q 042388 325 ILIPEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIETEKML 404 (567)
Q Consensus 325 Ili~EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL 404 (567)
++++||... ..+
T Consensus 618 ~~~se~~~~--------------------------------------------------------------------~~~ 629 (762)
T cd00764 618 EKCNENYTT--------------------------------------------------------------------VFT 629 (762)
T ss_pred eeeecCCcc--------------------------------------------------------------------ccH
Confidence 999998621 012
Q ss_pred HHHHHHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC---------------CceEE
Q 042388 405 IQMVETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGK---------------TGLIS 469 (567)
Q Consensus 405 ~~lV~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~---------------tG~mv 469 (567)
+++++++++ +.|++|..+|||.||||.||+|||.+|++||..|++++.++. +.+++
T Consensus 630 ~~~~~~~~~---------~~~~~R~~vLGh~QrGG~Ps~~DR~latr~g~~Av~~l~~~~~~~~~~~~~~~~~~~~~~~i 700 (762)
T cd00764 630 YELYSEEGK---------GVFDCRTNVLGHVQQGGAPSPFDRNFGTKFAVKAMKWIEQKLKENYAAGNEFANDPDFNCVN 700 (762)
T ss_pred HHHHHHHHh---------cCCceEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCceEEE
Confidence 233344432 258999999999999999999999999999999999999853 77888
Q ss_pred EEecCCCCccceEEeccchHhHHH--HHHhcCCcccccc
Q 042388 470 SVGNLGEPVEEWTVGGTALTSLMD--VERRHGKFKPVIK 506 (567)
Q Consensus 470 ~i~~l~~~~~~w~~~~vPL~~~~~--~e~~~g~~~p~i~ 506 (567)
++++.. +...|+.+|.. ++.|.++..+|.+
T Consensus 701 g~~~~~-------~~~~~~~~~~~~~~~~r~p~~~~w~~ 732 (762)
T cd00764 701 GVKKYA-------VLFEPVEELKQTTFEHRIPKEQWWLS 732 (762)
T ss_pred EEeCCE-------EEEeeHHHHHHhhhhcCCCcchhhHh
Confidence 888875 67788887755 5566777777763
No 28
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-57 Score=496.42 Aligned_cols=537 Identities=25% Similarity=0.230 Sum_probs=460.2
Q ss_pred CCcccCCHhhhhhcCCCCCCccccccc--cceecCCCCCCCCChhHHHhhCCcccCCCee------EEecCCcccccCCC
Q 042388 16 RLASVYSELQTSRLNVSLPLPSVLKKT--FNVVDGAPSSASGNPEEIKKLFPKLFGQPSA------RLVECDPKACSMEN 87 (567)
Q Consensus 16 ~~~~~~s~l~~~r~~~~p~lp~~l~~~--~~~~~~~~~~~~~~~~~i~~~fp~~~~~p~~------~~~~~~~~~~~~~~ 87 (567)
+..+.++++|-.|..|.|.+|..+.+. .....+......+..+.|.+.||+++..+-= ...|.+ ...-..
T Consensus 41 ~g~~~i~e~~w~~v~~~~~lggt~~g~ar~~~f~~~~gr~~aa~~~i~~~i~~l~~~ggdgsl~ga~~~p~e--~~~~~~ 118 (666)
T KOG2440|consen 41 RGGDSIKEAQWLRVSYILSLGGTLIGTARCKAFRGREGRLAAADNLIARGIPNLVVIGGDGSLTGARAFPRE--WIYLEE 118 (666)
T ss_pred ccccchhhcchhhhCCcccCCCcccccccccccccccceeccchhHHHhhcCeeEecCCccchhHhhhCchh--ccccch
Confidence 334678999999999999999999876 4444444555668899999999999887631 111211 112234
Q ss_pred CCcEEEEEecCCCCchhhHHHHHHHHHHH--------HhcCCCEEEE---------EeCCcccccCCCEEEcCccccccc
Q 042388 88 KSLKIGVVLSGGQAPGGHNVISGIFDYLQ--------ERTNGSKLYG---------FKGGPAGIMKCKYVELSTEYIYPY 150 (567)
Q Consensus 88 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~--------~~~~~~~v~G---------f~~G~~GLl~~~~~eLt~~~v~~~ 150 (567)
+..+.|||++||+|||+|+||+|++-.+- -+.-++-+.+ +..|++|++...+.++.-...--+
T Consensus 119 elvk~giVt~g~~~pg~~lvI~giVgsidnd~~g~~~~iG~dsal~re~id~~~~ta~sh~RgFv~evmgr~cg~lalv~ 198 (666)
T KOG2440|consen 119 ELVKAGIVTCGGLCPGGHLVIVGIVGSIDNDMYGTDMTIGIDSALHREAIDAITSTAQSHSRGFVAEVMGRHCGYLALVA 198 (666)
T ss_pred HHhhcceeecccccccCccEEEEEeccccccccccceeeccccchhhhhhhhhhhhhccCcceEEeeehhhccchHHHHH
Confidence 56799999999999999999997765432 1222333333 566699999988877776655555
Q ss_pred cccCCcccccccCCCCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCC
Q 042388 151 RNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKE 230 (567)
Q Consensus 151 ~n~GG~~~LGS~R~k~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ 230 (567)
.+.+|+|+|...+...+++||+.++++.+++.++|.+|||||++++++|..++|+++++.++..|++||||||||++.-+
T Consensus 199 ~ia~~aD~i~~pe~~~~~~~q~~~~l~~~r~~Gln~viVigG~~~~~ga~i~ae~vk~~~~k~lv~g~p~TilGdvqrgg 278 (666)
T KOG2440|consen 199 AIAGGADTIFIPERPGEDPEQLCEILDSIRKRGLNIVIVIGGAIDNTGAPIIAEEVKERKLKVLVVGVPKTILGDVQRGG 278 (666)
T ss_pred HhhcCCCEEEecCCCCCCHHHHHHHHHHHHhCCCCEEEEEecccCCCCCcccHHHHHHhhhheeeecceeeecCccccCC
Confidence 56666677777777777899999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHH
Q 042388 231 VPTSFGFDTACKIFSEMIGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITD 310 (567)
Q Consensus 231 ie~S~GFdTA~k~~ae~I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d 310 (567)
.+..|+|+|||+..+++|.+++.++.|+-++++|||+|||.|+|+|++|+||++++.+.+.+|......++......+++
T Consensus 279 ~p~afDr~ta~~~g~eAI~a~l~~a~s~~~g~~~VRlmgr~~~~it~~~tla~~~~d~~l~~elr~~~f~~~~~~~~~~~ 358 (666)
T KOG2440|consen 279 VPSAFDRITACEMGQEAINAALEEAESAENGNGIVRLMGRESVHITLEATLASRDKDFCLAPELRGRKFTLNLNTYKILD 358 (666)
T ss_pred cccccchHHHHHHHHHHHHHHHhhchhhcccceeEEehhHHHHHHHHHHHHhcCccceeehhhhcchhhhhhhhHHhhhh
Confidence 64444444999999999999999999999999999999999999999999999998887777777778889999999999
Q ss_pred HHHHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCC
Q 042388 311 IICKRSEAGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPH 390 (567)
Q Consensus 311 ~I~~R~~~gk~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~ 390 (567)
++..|.....+|+. ++++++.|.+..+.|.++.+.++.....+.++-+...++.+..+. +++|..+..++....+.+
T Consensus 359 ~~~~~~~~~p~~~~--~~~~ii~~g~~~~~lnaa~~~~v~~a~~~G~~~~~i~~~~~gl~~-d~~~~~~~~dv~~w~~~g 435 (666)
T KOG2440|consen 359 VVDPRAEQDPFYGE--IPGAIGLFGAPAAGLNAAGHSVLRYAEGAGQDVIAISNGFEGLAK-DALGELIWKDVGLWLSQG 435 (666)
T ss_pred ccccccccCCCCce--eccceeeechhhhHHHHHHHHHHHHhhhcCceeEeeccchhhhhh-hhhhhhHHHHhhcccccC
Confidence 99999999999999 999999999999999999999876655444444666677776666 899999999999999999
Q ss_pred CCcccchhhh-HHHHHHHHHHHHHHhhhcCCcCc-ccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceE
Q 042388 391 GNVQVAKIET-EKMLIQMVETELNKMKQKGAYKG-QFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLI 468 (567)
Q Consensus 391 Gn~~ls~i~t-e~lL~~lV~~~L~~r~~~~~y~~-~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~m 468 (567)
|+.+..+++| |++..++|..++.+|+..+.|.. .|.+..++++|++|++.||.||..||+..+..+-..-..+.++.+
T Consensus 436 gs~~gtk~~~~e~~~~~~I~~~~~~r~i~gl~~~ggf~a~~~~~~l~g~~~~yt~f~i~~v~ip~t~snnvpgt~~s~gv 515 (666)
T KOG2440|consen 436 GSALGTKRETPEKMDLKYIAPTLMKRKIDGLAIDGGFEALLAQSALHGARAGYTGFDIPMVNIPATYSNNVPGTEFSLGV 515 (666)
T ss_pred chhheecccCcccccHHHhHHHHHHhccccceeecchHHHHHHHHHhhhhcCCCCcccceEEeeeeecCCcccccccccc
Confidence 9999999997 89999999999999999888876 899999999999999999999999999999998877778899999
Q ss_pred EEEecCCCCccceEEeccchHhHHHHHHh--cCCc---------ccccchhhhccCCchhHHHHHhhccccccCceeCCc
Q 042388 469 SSVGNLGEPVEEWTVGGTALTSLMDVERR--HGKF---------KPVIKKAMVELEGIPFKTFASLREDWTIKNLYVSPG 537 (567)
Q Consensus 469 v~i~~l~~~~~~w~~~~vPL~~~~~~e~~--~g~~---------~p~i~~~~v~l~~~~f~~~~~~r~~w~~~d~y~~pG 537 (567)
.+..|...+..+|.....+++..+.++.+ .|.. +|.+.++.|.+.+.+|+.|.+.++.|++++.|.+|+
T Consensus 516 dt~~N~~~~~~d~t~Q~a~~T~~~vf~~e~~gg~~gyla~~~~l~~ga~~a~v~e~~~~~~~l~~~~~~~~~k~~~~~~~ 595 (666)
T KOG2440|consen 516 DTALNAWARVCDSTKQSAFGTKRRVFVVETMGGYSGYLATMTGLAPGADAAYVPEEGFSIKDLRENAEHLAEKMRYGNPR 595 (666)
T ss_pred chhHhhhhhhhhhccCCcccccceeEEEEecCCCccceeccccccccccccccccccccHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999999999999999998887765 4544 899999999999999999999999999999999999
Q ss_pred cccccCCCCCCCcceeEecC
Q 042388 538 PIQFVGPNANDINHTLKLEL 557 (567)
Q Consensus 538 piq~~g~~~~~~~~tl~~e~ 557 (567)
|+||.+|.+|....|+.+|.
T Consensus 596 ~l~~r~e~a~~~~~t~~~~~ 615 (666)
T KOG2440|consen 596 GLQLRNEGADANYTTLFLEN 615 (666)
T ss_pred ceEEeCCCcchhhhHHHHHH
Confidence 99999999999999999985
No 29
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.6e-36 Score=329.41 Aligned_cols=355 Identities=21% Similarity=0.259 Sum_probs=278.2
Q ss_pred EEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCC--EEEcCccccccccccCCcccccccCCC-CCChH
Q 042388 94 VVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCK--YVELSTEYIYPYRNQGGFDMICSGRDK-IETPE 170 (567)
Q Consensus 94 Iv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~--~~eLt~~~v~~~~n~GG~~~LGS~R~k-~~~~e 170 (567)
|+||||++||||++++.+++. ..+.+.++|+++.||.|++++. +.+++|+.++.|...||+ ++|+.|.+ +...+
T Consensus 1 v~tsggd~~gmnaavr~~vr~--~i~~g~~~~~i~egy~gl~~g~~~i~e~~w~~v~~~~~lggt-~~g~ar~~~f~~~~ 77 (666)
T KOG2440|consen 1 VLTSGGDSQGMNAAVRAVVRM--GIYRGCKVYLIYEGYEGLVRGGDSIKEAQWLRVSYILSLGGT-LIGTARCKAFRGRE 77 (666)
T ss_pred CcCCCCCCCCccHHHHHHHHh--ccccCceEEEEecccccccccccchhhcchhhhCCcccCCCc-cccccccccccccc
Confidence 689999999999999999998 6789999999999999999965 789999999999999998 99999976 77889
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHh-----------------cCCCCccEEEecccCcCCCCCCCCCC
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFR-----------------SKDMKTRVIGCPKTIDGDLKCKEVPT 233 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~-----------------~~g~~i~VIgVPKTIDNDL~~~~ie~ 233 (567)
.+.++...+-..+|+.|+++|||+|++.|+.+-+++. ..+.++.|+|++.|||||+.+++ .
T Consensus 78 gr~~aa~~~i~~~i~~l~~~ggdgsl~ga~~~p~e~~~~~~elvk~giVt~g~~~pg~~lvI~giVgsidnd~~g~~--~ 155 (666)
T KOG2440|consen 78 GRLAAADNLIARGIPNLVVIGGDGSLTGARAFPREWIYLEEELVKAGIVTCGGLCPGGHLVIVGIVGSIDNDMYGTD--M 155 (666)
T ss_pred ceeccchhHHHhhcCeeEecCCccchhHhhhCchhccccchHHhhcceeecccccccCccEEEEEeccccccccccc--e
Confidence 9999999999999999999999999999999866541 25677899999999999999988 5
Q ss_pred CCChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHHH
Q 042388 234 SFGFDTACKIFSEMIGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIIC 313 (567)
Q Consensus 234 S~GFdTA~k~~ae~I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~ 313 (567)
++|-|||..- ++|+.|..++.|+.| -|++|+|||+|||+|+-.++|+++|.+++||.+... .+++|+.+.
T Consensus 156 ~iG~dsal~r--e~id~~~~ta~sh~R-gFv~evmgr~cg~lalv~~ia~~aD~i~~pe~~~~~-------~~q~~~~l~ 225 (666)
T KOG2440|consen 156 TIGIDSALHR--EAIDAITSTAQSHSR-GFVAEVMGRHCGYLALVAAIAGGADTIFIPERPGED-------PEQLCEILD 225 (666)
T ss_pred eeccccchhh--hhhhhhhhhhccCcc-eEEeeehhhccchHHHHHHhhcCCCEEEecCCCCCC-------HHHHHHHHH
Confidence 9999999988 999999999999987 489999999999999999999999999999998753 345555554
Q ss_pred HHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCc
Q 042388 314 KRSEAGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNV 393 (567)
Q Consensus 314 ~R~~~gk~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~ 393 (567)
.-..+| ..+|+|.||.++. +|.
T Consensus 226 ~~r~~G--ln~viVigG~~~~----------------------~ga---------------------------------- 247 (666)
T KOG2440|consen 226 SIRKRG--LNIVIVIGGAIDN----------------------TGA---------------------------------- 247 (666)
T ss_pred HHHhCC--CCEEEEEecccCC----------------------CCC----------------------------------
Confidence 444445 6789999998752 111
Q ss_pred ccchhhhHHHHHHHHHHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEec
Q 042388 394 QVAKIETEKMLIQMVETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGN 473 (567)
Q Consensus 394 ~ls~i~te~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~ 473 (567)
.++++-|+++.-++ ..+.++.+++||.||++.||.||+.+|..+|..|+..+...... ++++
T Consensus 248 --------~i~ae~vk~~~~k~-------lv~g~p~TilGdvqrgg~p~afDr~ta~~~g~eAI~a~l~~a~s---~~~g 309 (666)
T KOG2440|consen 248 --------PIIAEEVKERKLKV-------LVVGVPKTILGDVQRGGVPSAFDRITACEMGQEAINAALEEAES---AENG 309 (666)
T ss_pred --------cccHHHHHHhhhhe-------eeecceeeecCccccCCcccccchHHHHHHHHHHHHHHHhhchh---hccc
Confidence 12344455554443 24678899999999999999999999999999999988876554 3333
Q ss_pred CCCCccceEEeccchHhHHHHHHhcC-CcccccchhhhccCCchhHHHHHhhcccc------c-cCcee-CCccccccCC
Q 042388 474 LGEPVEEWTVGGTALTSLMDVERRHG-KFKPVIKKAMVELEGIPFKTFASLREDWT------I-KNLYV-SPGPIQFVGP 544 (567)
Q Consensus 474 l~~~~~~w~~~~vPL~~~~~~e~~~g-~~~p~i~~~~v~l~~~~f~~~~~~r~~w~------~-~d~y~-~pGpiq~~g~ 544 (567)
.. +...|+.+...+.+..- ...++.-..-+++.+..|..+-..-+.-. . ...|- .||++-.+|+
T Consensus 310 ~~-------~VRlmgr~~~~it~~~tla~~~~d~~l~~elr~~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ii~~g~ 382 (666)
T KOG2440|consen 310 NG-------IVRLMGRESVHITLEATLASRDKDFCLAPELRGRKFTLNLNTYKILDVVDPRAEQDPFYGEIPGAIGLFGA 382 (666)
T ss_pred ce-------eEEehhHHHHHHHHHHHHhcCccceeehhhhcchhhhhhhhHHhhhhccccccccCCCCceeccceeeech
Confidence 22 56677777666554321 11222223334566666665533322221 1 12222 5788888887
Q ss_pred CC
Q 042388 545 NA 546 (567)
Q Consensus 545 ~~ 546 (567)
.+
T Consensus 383 ~~ 384 (666)
T KOG2440|consen 383 PA 384 (666)
T ss_pred hh
Confidence 65
No 30
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=88.31 E-value=21 Score=34.41 Aligned_cols=103 Identities=20% Similarity=0.229 Sum_probs=64.2
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChH
Q 042388 91 KIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPE 170 (567)
Q Consensus 91 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e 170 (567)
+||+++.+...|-.+.++.|+-+.++.. +.+ ++.+ ..+ .+++
T Consensus 1 ~ig~v~~~~~~~~~~~~~~g~~~~~~~~--g~~---------------l~~~---------~~~------------~~~~ 42 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKAA--GYQ---------------VLLA---------NSQ------------NDAE 42 (264)
T ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHHc--CCe---------------EEEE---------eCC------------CCHH
Confidence 5899999888999999999999887641 111 1100 001 1334
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhH
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTA 240 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA 240 (567)
...+.++.+...++|++|+.+.+.+... ..+.+.+. ++++|.+-.+.+.. ... .++++|..
T Consensus 43 ~~~~~~~~~~~~~~d~ii~~~~~~~~~~---~~~~l~~~--~ip~v~~~~~~~~~--~~~--~~v~~d~~ 103 (264)
T cd01537 43 KQLSALENLIARGVDGIIIAPSDLTAPT---IVKLARKA--GIPVVLVDRDIPDG--DRV--PSVGSDNE 103 (264)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCcchh---HHHHhhhc--CCCEEEeccCCCCC--ccc--ceEecCcH
Confidence 5666777777789999999988776544 22333333 46788876665541 111 36666554
No 31
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.95 E-value=0.89 Score=46.92 Aligned_cols=55 Identities=24% Similarity=0.266 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHcCC-----CEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHH
Q 042388 171 QFKQAEETAKKLDL-----DGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACK 242 (567)
Q Consensus 171 ~~~~~~~~l~~~~i-----d~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k 242 (567)
-.++..+.++.+++ |.+|+||||||+-.|+.... ..+++|+||-. -++||-|..+
T Consensus 16 ~~~~l~~~~~~~~~~~~~~D~vi~iGGDGT~L~a~~~~~-----~~~iPilGIN~------------G~lGFL~~~~ 75 (259)
T PRK00561 16 VLPKLKKVLKKKLAVEDGADYLFVLGGDGFFVSTAANYN-----CAGCKVVGINT------------GHLGFYTSFN 75 (259)
T ss_pred HHHHHHHHHhhCCCccCCCCEEEEECCcHHHHHHHHHhc-----CCCCcEEEEec------------CCCccccccC
Confidence 34445555655555 99999999999887766532 34688999872 2789988543
No 32
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=87.94 E-value=1.2 Score=45.56 Aligned_cols=55 Identities=27% Similarity=0.290 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHcCC------CEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhH
Q 042388 169 PEQFKQAEETAKKLDL------DGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTA 240 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~i------d~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA 240 (567)
++.-+.+.+..+++++ |.+|+||||||+-.|..... ..+++|+||-. . ++||-|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGTlL~a~~~~~-----~~~~PvlGIN~---------G---~lGFL~~ 65 (246)
T PRK04761 5 PEAQAALEELVKRYGDVPIEEADVIVALGGDGFMLQTLHRYM-----NSGKPVYGMNR---------G---SVGFLMN 65 (246)
T ss_pred HHHHHHHHHHHHHhCCCCcccCCEEEEECCCHHHHHHHHHhc-----CCCCeEEEEeC---------C---CCCcccC
Confidence 3333444455566776 99999999999987765532 23678999874 2 7888874
No 33
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=87.07 E-value=0.86 Score=48.53 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=42.6
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcC
Q 042388 167 ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDG 224 (567)
Q Consensus 167 ~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDN 224 (567)
.|.++-..+++.+.+.++|-+++.|||||.+.++.-. +.+++|+|||.=.-|
T Consensus 84 tTa~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa~av------~~~vPvLGipaGvk~ 135 (355)
T COG3199 84 TTAEDTINAVRRMVERGVDLIVFAGGDGTARDVAEAV------GADVPVLGIPAGVKN 135 (355)
T ss_pred ccHHHHHHHHHHHHhcCceEEEEeCCCccHHHHHhhc------cCCCceEeeccccce
Confidence 4667888899999999999999999999988765432 558999999975444
No 34
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=84.66 E-value=2.4 Score=45.32 Aligned_cols=57 Identities=26% Similarity=0.310 Sum_probs=46.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcC--------------CCCccEEEecccCcC
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSK--------------DMKTRVIGCPKTIDG 224 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~--------------g~~i~VIgVPKTIDN 224 (567)
+.++.+++++.+++.+.|.+|-|||--+++.|..++-..... +..+++|.||-|--.
T Consensus 63 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gt 133 (366)
T PF00465_consen 63 TLEDVDEAAEQARKFGADCIIAIGGGSVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGT 133 (366)
T ss_dssp BHHHHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSS
T ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCccc
Confidence 568899999999999999999999999999998888766422 112789999976554
No 35
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=84.15 E-value=0.96 Score=46.95 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=30.6
Q ss_pred HHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecc
Q 042388 177 ETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPK 220 (567)
Q Consensus 177 ~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPK 220 (567)
......+.|.+|++|||||+..|+.... +.+++|+||+.
T Consensus 70 ~~~~~~~~D~ii~lGGDGT~L~~~~~~~-----~~~~Pilgin~ 108 (285)
T PF01513_consen 70 EEMLEEGVDLIIVLGGDGTFLRAARLFG-----DYDIPILGINT 108 (285)
T ss_dssp HHHHCCCSSEEEEEESHHHHHHHHHHCT-----TST-EEEEEES
T ss_pred hhhcccCCCEEEEECCCHHHHHHHHHhc-----cCCCcEEeecC
Confidence 3445789999999999999998876642 35789999994
No 36
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=83.07 E-value=43 Score=32.85 Aligned_cols=173 Identities=18% Similarity=0.171 Sum_probs=97.5
Q ss_pred EEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChHH
Q 042388 92 IGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPEQ 171 (567)
Q Consensus 92 IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e~ 171 (567)
||||.....-|-...+..|+-+.++.. +.++.-+ .. ... +.+.
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~~~--g~~~~~~-----------------------~~-~~~-----------d~~~ 43 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAKEL--GYEVEIV-----------------------FD-AQN-----------DPEE 43 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHH--TCEEEEE-----------------------EE-STT-----------THHH
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHc--CCEEEEe-----------------------CC-CCC-----------CHHH
Confidence 788998888887777889998887654 2322211 00 111 3466
Q ss_pred HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCC-CCCCCCCCCCChHhHHHHHHHHHHH
Q 042388 172 FKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGD-LKCKEVPTSFGFDTACKIFSEMIGN 250 (567)
Q Consensus 172 ~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDND-L~~~~ie~S~GFdTA~k~~ae~I~n 250 (567)
..+.++.+.+.++|++|+..-+.+... ..| +.+.++| ++||. +|+| ........++|+|.. +....+...
T Consensus 44 q~~~i~~~i~~~~d~Iiv~~~~~~~~~-~~l-~~~~~~g--Ipvv~----~d~~~~~~~~~~~~v~~d~~-~~G~~~a~~ 114 (257)
T PF13407_consen 44 QIEQIEQAISQGVDGIIVSPVDPDSLA-PFL-EKAKAAG--IPVVT----VDSDEAPDSPRAAYVGTDNY-EAGKLAAEY 114 (257)
T ss_dssp HHHHHHHHHHTTESEEEEESSSTTTTH-HHH-HHHHHTT--SEEEE----ESSTHHTTSTSSEEEEE-HH-HHHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEecCCCHHHHH-HHH-HHHhhcC--ceEEE----EeccccccccceeeeeccHH-HHHHHHHHH
Confidence 678889999999999998888875433 333 4455555 56776 5777 444444578888743 333333333
Q ss_pred HHHHHhhcCCeeEEE-EecCCCCcHH----HHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHHH
Q 042388 251 VMTDARSTGKYYHFV-RLMGRAASHI----TLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIIC 313 (567)
Q Consensus 251 i~~da~S~~k~~~fV-evMGR~ag~L----AL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~ 313 (567)
+. +.......+.++ ...+ ...+. ++.-+|..++++-+++|... .+.+..+..+.+.+.+.
T Consensus 115 l~-~~~~~~~~v~~~~~~~~-~~~~~~r~~g~~~~l~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~l~ 179 (257)
T PF13407_consen 115 LA-EKLGAKGKVLILSGSPG-NPNTQERLEGFRDALKEYPGVEIVDEYEY-TDWDPEDARQAIENLLQ 179 (257)
T ss_dssp HH-HHHTTTEEEEEEESSTT-SHHHHHHHHHHHHHHHHCTTEEEEEEEEE-CTTSHHHHHHHHHHHHH
T ss_pred HH-HHhccCceEEeccCCCC-chHHHHHHHHHHHHHhhcceeeeeeeeec-cCCCHHHHHHHHHHhhh
Confidence 33 333222223333 2222 11111 22335556678888885432 23455555555555544
No 37
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=82.67 E-value=2.4 Score=43.83 Aligned_cols=68 Identities=21% Similarity=0.275 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHc-------CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHH
Q 042388 170 EQFKQAEETAKKL-------DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACK 242 (567)
Q Consensus 170 e~~~~~~~~l~~~-------~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k 242 (567)
+-.+++.+.|+++ +.|.+|++|||||+-.|+..... .-.+++|+||.- -++||-|...
T Consensus 15 ~~~~~l~~~l~~~g~~~~~~~~Dlvi~iGGDGT~L~a~~~~~~---~~~~iPilGIN~------------G~lGFL~~~~ 79 (265)
T PRK04885 15 RVASKLKKYLKDFGFILDEKNPDIVISVGGDGTLLSAFHRYEN---QLDKVRFVGVHT------------GHLGFYTDWR 79 (265)
T ss_pred HHHHHHHHHHHHcCCccCCcCCCEEEEECCcHHHHHHHHHhcc---cCCCCeEEEEeC------------CCceecccCC
Confidence 3345555556554 36899999999998877655321 113688999973 2789998643
Q ss_pred --HHHHHHHHHH
Q 042388 243 --IFSEMIGNVM 252 (567)
Q Consensus 243 --~~ae~I~ni~ 252 (567)
-+-+.+.++.
T Consensus 80 ~~~~~~~l~~i~ 91 (265)
T PRK04885 80 PFEVDKLVIALA 91 (265)
T ss_pred HHHHHHHHHHHH
Confidence 3444555553
No 38
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=82.48 E-value=2.8 Score=43.89 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=37.4
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHH--HHHHHHHHHHH
Q 042388 183 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTAC--KIFSEMIGNVM 252 (567)
Q Consensus 183 ~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~--k~~ae~I~ni~ 252 (567)
+.|.+|+||||||+-.|+.... ..+++|+||-. -++||-|.. +-+-+.+.++.
T Consensus 64 ~~Dlvi~iGGDGT~L~aa~~~~-----~~~~PilGIN~------------G~lGFLt~~~~~~~~~~l~~i~ 118 (287)
T PRK14077 64 ISDFLISLGGDGTLISLCRKAA-----EYDKFVLGIHA------------GHLGFLTDITVDEAEKFFQAFF 118 (287)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-----CCCCcEEEEeC------------CCcccCCcCCHHHHHHHHHHHH
Confidence 5799999999999777665532 23678999863 288998874 34455555554
No 39
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=82.41 E-value=4 Score=43.21 Aligned_cols=54 Identities=19% Similarity=0.176 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhc--CCCCccEEEeccc
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRS--KDMKTRVIGCPKT 221 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~--~g~~i~VIgVPKT 221 (567)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.... ..-.+++|.||-|
T Consensus 63 ~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~aKa~a~~~~~~~~~~~~p~i~VPTt 118 (332)
T cd08180 63 PIEVVAKGIKKFLDFKPDIVIALGGGSAIDAAKAIIYFAKKLGKKKKPLFIAIPTT 118 (332)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHHhCCCCCCCCCEEEeCCC
Confidence 46778899999999999999999999888888777654332 1224789999966
No 40
>PLN02929 NADH kinase
Probab=81.35 E-value=2.1 Score=45.21 Aligned_cols=54 Identities=28% Similarity=0.293 Sum_probs=34.2
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecc---cCcCCC-CCCCCC--CCCChHhHHH
Q 042388 183 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPK---TIDGDL-KCKEVP--TSFGFDTACK 242 (567)
Q Consensus 183 ~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPK---TIDNDL-~~~~ie--~S~GFdTA~k 242 (567)
+.|.+|++|||||+-.|+... ..+++|+||-. +.|.-- ..+.++ .++||-+++.
T Consensus 64 ~~Dlvi~lGGDGT~L~aa~~~------~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~ 123 (301)
T PLN02929 64 DVDLVVAVGGDGTLLQASHFL------DDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAAT 123 (301)
T ss_pred CCCEEEEECCcHHHHHHHHHc------CCCCcEEEEECCCcccccccccccccccccCccccccCC
Confidence 457899999999998877653 23578999843 222210 001111 2789988855
No 41
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=80.57 E-value=3.2 Score=46.58 Aligned_cols=53 Identities=19% Similarity=0.339 Sum_probs=37.4
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHH--HHHHHHHHHHH
Q 042388 183 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTAC--KIFSEMIGNVM 252 (567)
Q Consensus 183 ~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~--k~~ae~I~ni~ 252 (567)
++|.+|+||||||+-.|+.+.. ...++|+||- . -++||-|.. .-+-+.+..|.
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~-----~~~iPILGIN---------~---G~LGFLt~i~~~e~~~~Le~il 316 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFK-----GPVPPVVPFS---------M---GSLGFMTPFHSEQYRDCLDAIL 316 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEe---------C---CCcceecccCHHHHHHHHHHHH
Confidence 6899999999999988876643 3457899984 1 289998764 23344444443
No 42
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=80.43 E-value=57 Score=32.21 Aligned_cols=89 Identities=15% Similarity=0.054 Sum_probs=55.5
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChH
Q 042388 91 KIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPE 170 (567)
Q Consensus 91 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e 170 (567)
+||||++.-..|-...++.|+-+.++....+..++- ..+. .+++
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~---------------------------------~~~~---~~~~ 44 (271)
T cd06321 1 KIGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVTV---------------------------------VSAD---YDLN 44 (271)
T ss_pred CeEEEecccCCHHHHHHHHHHHHHHHHhCCCeEEEE---------------------------------ccCC---CCHH
Confidence 489999888889999999999988764311111110 0011 1344
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEec
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCP 219 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVP 219 (567)
.....++.+...++|++|+.+.+... ....+ +.+.+.+ ++||.+-
T Consensus 45 ~~~~~i~~~~~~~~dgiIi~~~~~~~-~~~~i-~~~~~~~--ipvv~~~ 89 (271)
T cd06321 45 KQVSQIDNFIAAKVDLILLNAVDSKG-IAPAV-KRAQAAG--IVVVAVD 89 (271)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCChhH-hHHHH-HHHHHCC--CeEEEec
Confidence 55677788889999999998766432 12223 3344444 5677773
No 43
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.43 E-value=3.4 Score=42.41 Aligned_cols=49 Identities=20% Similarity=0.424 Sum_probs=34.9
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHH--HHHHHHHH
Q 042388 183 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKI--FSEMIGNV 251 (567)
Q Consensus 183 ~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~--~ae~I~ni 251 (567)
+.|.+|++|||||+-.|+... +++|+||-. -++||-|.... +-+++.++
T Consensus 41 ~~d~vi~iGGDGT~L~a~~~~--------~~Pilgin~------------G~lGfl~~~~~~~~~~~l~~~ 91 (256)
T PRK14075 41 TADLIIVVGGDGTVLKAAKKV--------GTPLVGFKA------------GRLGFLSSYTLEEIDRFLEDL 91 (256)
T ss_pred CCCEEEEECCcHHHHHHHHHc--------CCCEEEEeC------------CCCccccccCHHHHHHHHHHH
Confidence 669999999999998776542 578999872 27899887543 33444444
No 44
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=80.03 E-value=5.3 Score=42.80 Aligned_cols=55 Identities=20% Similarity=0.217 Sum_probs=43.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcC-------------CCCccEEEecccC
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSK-------------DMKTRVIGCPKTI 222 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~-------------g~~i~VIgVPKTI 222 (567)
+.++..++++.+++.+.|.+|-|||--.++.|..++-.+... .-.+++|.||-|-
T Consensus 65 ~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~ 132 (370)
T cd08551 65 TLSNVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTA 132 (370)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCC
Confidence 568899999999999999999999999998888777544211 1246889998654
No 45
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.89 E-value=4.1 Score=42.76 Aligned_cols=54 Identities=19% Similarity=0.352 Sum_probs=39.4
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHH--HHHHHHHHHHH
Q 042388 183 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACK--IFSEMIGNVMT 253 (567)
Q Consensus 183 ~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k--~~ae~I~ni~~ 253 (567)
+.|.+|++|||||+-.|+.... ..+++|+||-. -++||-|... -+-+.++++..
T Consensus 64 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGIN~------------G~lGFLt~~~~~~~~~~l~~i~~ 119 (292)
T PRK01911 64 SADMVISIGGDGTFLRTATYVG-----NSNIPILGINT------------GRLGFLATVSKEEIEETIDELLN 119 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEec------------CCCCcccccCHHHHHHHHHHHHc
Confidence 5799999999999877765532 23688999864 2789999864 45566666653
No 46
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=79.64 E-value=5.5 Score=42.95 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCC--------------CCccEEEecccC
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKD--------------MKTRVIGCPKTI 222 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g--------------~~i~VIgVPKTI 222 (567)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-.....+ ..+++|.||-|-
T Consensus 68 ~~~~v~~~~~~~~~~~~d~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 136 (374)
T cd08189 68 TIENVEAGLALYRENGCDAILAVGGGSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTA 136 (374)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCC
Confidence 5678999999999999999999999999988877765432211 126889999654
No 47
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=79.19 E-value=5 Score=42.63 Aligned_cols=53 Identities=28% Similarity=0.367 Sum_probs=44.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCC
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGD 225 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDND 225 (567)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.. ++++|.||-|..++
T Consensus 62 ~~~~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~-----~~p~i~IPTtatgs 114 (337)
T cd08177 62 PVEVTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRT-----GLPIIAIPTTLSGS 114 (337)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----cCCEEEEcCCchhh
Confidence 457889999999999999999999999999888887542 57899999876444
No 48
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=78.34 E-value=5.6 Score=42.37 Aligned_cols=52 Identities=23% Similarity=0.277 Sum_probs=44.9
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCc
Q 042388 167 ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTID 223 (567)
Q Consensus 167 ~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTID 223 (567)
.+.+..+++.+.+++.+.|.+|-|||--.++.|..++-.+ .+++|.||-|--
T Consensus 60 p~~~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~-----~~p~i~VPTT~g 111 (347)
T cd08172 60 CSEENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRL-----GVPVITVPTLAA 111 (347)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----CCCEEEecCccc
Confidence 4678899999999999999999999999999988887653 578999998763
No 49
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=78.03 E-value=6.6 Score=42.84 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHH
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAEN 205 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~ 205 (567)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-.
T Consensus 91 ~~~~v~~~~~~~r~~~~D~IiavGGGS~iD~AKaia~~ 128 (395)
T PRK15454 91 CITDVCAAVAQLRESGCDGVIAFGGGSVLDAAKAVALL 128 (395)
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHH
Confidence 45779999999999999999999999999998776543
No 50
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=77.38 E-value=5.3 Score=38.48 Aligned_cols=96 Identities=27% Similarity=0.362 Sum_probs=51.6
Q ss_pred CcEEEEEecC-CCCch--hhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCccccccc---
Q 042388 89 SLKIGVVLSG-GQAPG--GHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSG--- 162 (567)
Q Consensus 89 ~~~IgIv~sG-G~aPG--~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~--- 162 (567)
.++|||++|| |---| +|-.+-.+..- ...|.+..-|---..-+ +-+-.||-+.+..-||. ++-|.
T Consensus 1 mKkv~ViLSGCGV~DGaEIHEsVltllai---~r~GA~~~cFAP~~~Q~--hViNHlTGE~m~EtRNV----LvEsARIa 71 (217)
T COG3155 1 MKKVGVILSGCGVYDGAEIHESVLTLLAI---SRSGAQAVCFAPDKQQV--HVINHLTGEAMPETRNV----LVESARIA 71 (217)
T ss_pred CceeEEEeecCcccchHHHHHHHHHHHHH---HhcCceeEEecCCchhh--hhhhhccccccchhhhH----HHHHHHHh
Confidence 3799999999 43333 45555544432 23455555553211100 01223455555555553 23333
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHH
Q 042388 163 RDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNAC 200 (567)
Q Consensus 163 R~k~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~ 200 (567)
|.++.. +...+...+|+|++-||.|..++-.
T Consensus 72 RG~i~~-------l~~a~~e~~DALivPGGFGAAKNLs 102 (217)
T COG3155 72 RGEIRP-------LAQADAEELDALIVPGGFGAAKNLS 102 (217)
T ss_pred hccccc-------hhhcCHHhcceeeccCccchhhhhH
Confidence 334422 3344567799999999999876643
No 51
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=77.03 E-value=7.4 Score=41.93 Aligned_cols=54 Identities=28% Similarity=0.273 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcC-------------CCCccEEEeccc
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSK-------------DMKTRVIGCPKT 221 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~-------------g~~i~VIgVPKT 221 (567)
+.+...++++.+++.+.|.+|-|||--.++.|..++-.+... ...+++|.||-|
T Consensus 68 ~~~~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 134 (376)
T cd08193 68 PEAVVEAAVEAARAAGADGVIGFGGGSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTT 134 (376)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCC
Confidence 568899999999999999999999999898887776533110 124678888854
No 52
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=76.66 E-value=6.7 Score=41.26 Aligned_cols=54 Identities=26% Similarity=0.365 Sum_probs=44.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcC
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDG 224 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDN 224 (567)
+.++.+++++.+++.+.|.+|-|||--.++.|..++-.+. + .+++|.||-|.-.
T Consensus 63 ~~~~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~-~--~~p~i~iPTt~~t 116 (332)
T cd07766 63 TFEEVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLN-R--GLPIIIVPTTAAT 116 (332)
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhc-C--CCCEEEEeCCCch
Confidence 5688999999999999999999999988888888776543 2 4689999965543
No 53
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=75.85 E-value=8.1 Score=41.79 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=33.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHH
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAEN 205 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~ 205 (567)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.
T Consensus 69 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~ 106 (383)
T cd08186 69 TVDQVDEAAKLGREFGAQAVIAIGGGSPIDSAKSAAIL 106 (383)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHH
Confidence 56889999999999999999999999888888777654
No 54
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=75.76 E-value=8.1 Score=41.65 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHH
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAE 204 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae 204 (567)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-
T Consensus 66 ~~~~v~~~~~~~~~~~~D~IIavGGGSviD~AK~ia~ 102 (375)
T cd08179 66 SVETVLKGAEAMREFEPDWIIALGGGSPIDAAKAMWI 102 (375)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHH
Confidence 5678999999999999999999999999999877763
No 55
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=75.55 E-value=8.6 Score=41.54 Aligned_cols=54 Identities=22% Similarity=0.178 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcC---------------CCCccEEEeccc
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSK---------------DMKTRVIGCPKT 221 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~---------------g~~i~VIgVPKT 221 (567)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-..... ...+++|.||-|
T Consensus 71 ~~~~v~~~~~~~~~~~~D~IiaiGGGSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTT 139 (379)
T TIGR02638 71 TITVVKAGVAAFKASGADYLIAIGGGSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTT 139 (379)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCC
Confidence 467889999999999999999999998888886665322111 123678888865
No 56
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=75.36 E-value=8.9 Score=41.57 Aligned_cols=54 Identities=19% Similarity=0.152 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHH----------HHhc---CCCCccEEEeccc
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAE----------NFRS---KDMKTRVIGCPKT 221 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae----------~~~~---~g~~i~VIgVPKT 221 (567)
+.+..+++++.+++.+.|.+|-|||--+++.|..++- ++.. ....+++|.||-|
T Consensus 73 ~~~~v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTT 139 (383)
T PRK09860 73 TTENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTT 139 (383)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCC
Confidence 5688999999999999999999999999999887764 2110 1224678888854
No 57
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=75.34 E-value=8.7 Score=41.23 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhc-----------------CCCCccEEEeccc
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRS-----------------KDMKTRVIGCPKT 221 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~-----------------~g~~i~VIgVPKT 221 (567)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-.+.. ....+++|.||-|
T Consensus 62 ~~~~v~~~~~~~~~~~~D~IIavGGGs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 132 (367)
T cd08182 62 DLEDLAAGIRLLREFGPDAVLAVGGGSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTT 132 (367)
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCC
Confidence 45788999999999999999999999999988877654211 1124788998865
No 58
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=75.18 E-value=8.9 Score=41.35 Aligned_cols=54 Identities=20% Similarity=0.167 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhc-------------CCCCccEEEeccc
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRS-------------KDMKTRVIGCPKT 221 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~-------------~g~~i~VIgVPKT 221 (567)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.... ....+++|.||-|
T Consensus 70 ~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 136 (377)
T cd08176 70 TITNVKDGLAVFKKEGCDFIISIGGGSPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTT 136 (377)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCC
Confidence 46779999999999999999999999999988877642111 1234678888843
No 59
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=75.10 E-value=6.4 Score=41.90 Aligned_cols=50 Identities=22% Similarity=0.293 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccC
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 222 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 222 (567)
+.+...++.+.+++.+.|.+|-|||--+++.|..++-. ..+++|.||-|-
T Consensus 62 ~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~-----~~~P~iaIPTTa 111 (351)
T cd08170 62 TRAEIERLAEIARDNGADVVIGIGGGKTLDTAKAVADY-----LGAPVVIVPTIA 111 (351)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHH-----cCCCEEEeCCcc
Confidence 45778999999999999999999999999998888753 257899999763
No 60
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=74.97 E-value=7.6 Score=41.53 Aligned_cols=53 Identities=28% Similarity=0.287 Sum_probs=43.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCC
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGD 225 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDND 225 (567)
+.+..+++++.+++.+.|.+|-|||--.++.|..+| +. + .+++|.||-|.-.|
T Consensus 72 t~~~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA-~~--r--gip~I~IPTT~~td 124 (350)
T PRK00843 72 TMEEVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAA-YR--L--GIPFISVPTAASHD 124 (350)
T ss_pred CHHHHHHHHHHhhccCCCEEEEeCCchHHHHHHHHH-Hh--c--CCCEEEeCCCccCC
Confidence 567889999999999999999999988888887777 32 2 46899999986433
No 61
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=74.95 E-value=8.3 Score=41.62 Aligned_cols=38 Identities=24% Similarity=0.179 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHH
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAEN 205 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~ 205 (567)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-.
T Consensus 68 ~~~~v~~~~~~~~~~~~D~IiavGGGS~iD~aK~ia~~ 105 (380)
T cd08185 68 TTTTVMEGAALAREEGCDFVVGLGGGSSMDTAKAIAFM 105 (380)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHH
Confidence 46788999999999999999999999999888777643
No 62
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.57 E-value=3.7 Score=43.19 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=38.2
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHH--HHHHHHHHHH
Q 042388 183 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACK--IFSEMIGNVM 252 (567)
Q Consensus 183 ~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k--~~ae~I~ni~ 252 (567)
+.|.+|++|||||+-.|+.... ..+++|+||-. -++||-|... -+.+.+..+.
T Consensus 68 ~~D~vi~lGGDGT~L~aa~~~~-----~~~~PilGIN~------------G~lGFL~~~~~~~~~~~l~~i~ 122 (296)
T PRK04539 68 YCDLVAVLGGDGTFLSVAREIA-----PRAVPIIGINQ------------GHLGFLTQIPREYMTDKLLPVL 122 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----ccCCCEEEEec------------CCCeEeeccCHHHHHHHHHHHH
Confidence 6899999999999988876643 23678999863 2799998743 3444555543
No 63
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=74.23 E-value=9.7 Score=41.05 Aligned_cols=54 Identities=22% Similarity=0.232 Sum_probs=41.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHH----------HHhc---CCCCccEEEeccc
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAE----------NFRS---KDMKTRVIGCPKT 221 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae----------~~~~---~g~~i~VIgVPKT 221 (567)
+.+..+++++.+++.+.|.+|-|||--.++.|..++- ++.. ....+++|.||-|
T Consensus 65 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 131 (375)
T cd08194 65 TDESVEEGVKLAKEGGCDVIIALGGGSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTT 131 (375)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 4678899999999999999999999999998877752 1111 1224789999966
No 64
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=74.14 E-value=9.3 Score=41.55 Aligned_cols=36 Identities=17% Similarity=0.309 Sum_probs=32.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHH
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLA 203 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~La 203 (567)
+.+..+++++.+++.+.|.+|-|||--+++.|..++
T Consensus 63 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~iA 98 (398)
T cd08178 63 SLETVRKGLELMNSFKPDTIIALGGGSPMDAAKIMW 98 (398)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 557889999999999999999999999999887776
No 65
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=73.78 E-value=8.5 Score=40.92 Aligned_cols=52 Identities=19% Similarity=0.340 Sum_probs=42.7
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccC
Q 042388 168 TPEQFKQAEETAKKLDL---DGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 222 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~i---d~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 222 (567)
+.+..+++++.+++.+. |.+|.|||--.++.|..+|-... + .+++|.||-|.
T Consensus 63 ~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~~-~--~~p~i~VPTT~ 117 (344)
T TIGR01357 63 SLETVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFVAATYM-R--GIRFIQVPTTL 117 (344)
T ss_pred CHHHHHHHHHHHHHcCCCCCCEEEEEcChHHHHHHHHHHHHHc-c--CCCEEEecCch
Confidence 56789999999999998 89999999988888877764322 2 46899999886
No 66
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=73.72 E-value=10 Score=40.62 Aligned_cols=54 Identities=28% Similarity=0.278 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhc------------CCCCccEEEeccc
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRS------------KDMKTRVIGCPKT 221 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~------------~g~~i~VIgVPKT 221 (567)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-.... ....+++|.||-|
T Consensus 68 ~~~~v~~~~~~~~~~~~D~IIavGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTt 133 (357)
T cd08181 68 SLETIMEAVEIAKKFNADFVIGIGGGSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTT 133 (357)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCC
Confidence 56889999999999999999999999999998876642211 1124678888855
No 67
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=73.65 E-value=4 Score=42.42 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=32.9
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHH
Q 042388 183 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACK 242 (567)
Q Consensus 183 ~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k 242 (567)
+.|.+|+||||||+-.|+.... ..+++|+||-. -++||-|...
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~-----~~~~PilgIn~------------G~lGFL~~~~ 84 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLA-----KYDIPLIGINR------------GNLGFLTDID 84 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEeC------------CCCcccccCC
Confidence 6899999999999988766542 23678999852 2789988643
No 68
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=73.61 E-value=8.6 Score=40.81 Aligned_cols=54 Identities=22% Similarity=0.254 Sum_probs=44.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCC
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDL 226 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL 226 (567)
+.+..+++.+.+++.+.|.+|-|||--.++.|..++ +. .++++|.||-|.-+|-
T Consensus 63 ~~~~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a-~~----~~~p~i~iPTT~~t~s 116 (339)
T cd08173 63 TYEEVEKVESSARDIGADFVIGVGGGRVIDVAKVAA-YK----LGIPFISVPTAASHDG 116 (339)
T ss_pred CHHHHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHH-Hh----cCCCEEEecCcccCCc
Confidence 457889999999999999999999998888888887 32 2478999999886554
No 69
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=73.41 E-value=2.8 Score=43.66 Aligned_cols=43 Identities=23% Similarity=0.393 Sum_probs=32.5
Q ss_pred cCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHH
Q 042388 182 LDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACK 242 (567)
Q Consensus 182 ~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k 242 (567)
.+.|.+|++|||||+-.|..++ ..+++|+|||. . +.||-|...
T Consensus 56 ~~~d~vi~iGGDGTlL~a~~~~------~~~~pi~gIn~---------G---~lGFl~~~~ 98 (277)
T PRK03708 56 MDVDFIIAIGGDGTILRIEHKT------KKDIPILGINM---------G---TLGFLTEVE 98 (277)
T ss_pred cCCCEEEEEeCcHHHHHHHHhc------CCCCeEEEEeC---------C---CCCccccCC
Confidence 3689999999999998776643 23688999994 1 568877654
No 70
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=73.18 E-value=8 Score=40.06 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHcC---------CCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhH
Q 042388 170 EQFKQAEETAKKLD---------LDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTA 240 (567)
Q Consensus 170 e~~~~~~~~l~~~~---------id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA 240 (567)
+-.+++.+.|++++ .|.+|++|||||+-.|+..... . -+++|+||.- + -++||-|.
T Consensus 17 ~~~~~l~~~l~~~g~~~~~~~~~~D~vi~lGGDGT~L~a~~~~~~---~-~~~pilgIn~--~---------G~lGFL~~ 81 (264)
T PRK03501 17 EKVKPLKKIAEEYGFTVVDHPKNANIIVSIGGDGTFLQAVRKTGF---R-EDCLYAGIST--K---------DQLGFYCD 81 (264)
T ss_pred HHHHHHHHHHHHCCCEEEcCCCCccEEEEECCcHHHHHHHHHhcc---c-CCCeEEeEec--C---------CCCeEccc
Confidence 33444555565543 5899999999999877665321 1 1467888763 1 28889776
Q ss_pred HH
Q 042388 241 CK 242 (567)
Q Consensus 241 ~k 242 (567)
..
T Consensus 82 ~~ 83 (264)
T PRK03501 82 FH 83 (264)
T ss_pred CC
Confidence 43
No 71
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=72.20 E-value=4.5 Score=42.76 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=36.8
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHH--HHHHHHHHH
Q 042388 183 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACK--IFSEMIGNV 251 (567)
Q Consensus 183 ~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k--~~ae~I~ni 251 (567)
+.|.+|++|||||+-.|+.... ..+++|+||-. -++||-|... -+-+.+.++
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~-----~~~iPilGIN~------------G~lGFLt~~~~~~~~~~l~~l 121 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLA-----PCGIPLLTINT------------GHLGFLTEAYLNQLDEAIDQV 121 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhc-----CCCCcEEEEeC------------CCCcccccCCHHHHHHHHHHH
Confidence 6899999999999888776532 34689999942 2899988743 333444444
No 72
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=72.17 E-value=12 Score=40.19 Aligned_cols=55 Identities=18% Similarity=0.190 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHHHHc---CCCEEEEecCchhHHHHHHHHHHHhcC-------------CCCccEEEecccC
Q 042388 168 TPEQFKQAEETAKKL---DLDGLVVIGGDDSNTNACLLAENFRSK-------------DMKTRVIGCPKTI 222 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~---~id~LViIGGddS~t~A~~Lae~~~~~-------------g~~i~VIgVPKTI 222 (567)
+.+..+++++.+++. +.|.+|-|||--+++.|..++-..... +..+++|.||-|-
T Consensus 63 t~~~v~~~~~~~~~~~~~~~D~IIaiGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTa 133 (347)
T cd08184 63 KTDQIDALTAQVKSFDGKLPCAIVGIGGGSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLS 133 (347)
T ss_pred CHHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCC
Confidence 567899999999998 999999999999999987776433211 1125688888553
No 73
>PRK15138 aldehyde reductase; Provisional
Probab=72.04 E-value=11 Score=40.93 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHH
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAE 204 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae 204 (567)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-
T Consensus 70 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~ia~ 106 (387)
T PRK15138 70 TYETLMKAVKLVREEKITFLLAVGGGSVLDGTKFIAA 106 (387)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHH
Confidence 4678999999999999999999999999998887764
No 74
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=71.86 E-value=9.4 Score=40.65 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccC
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 222 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 222 (567)
+.+..+++.+.+++.+.|.+|-|||--+++.|..++-.+ .+++|.||-|-
T Consensus 63 ~~~~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~~-----~~p~i~VPTt~ 112 (345)
T cd08171 63 TYENVERLKKNPAVQEADMIFAVGGGKAIDTVKVLADKL-----GKPVFTFPTIA 112 (345)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHHc-----CCCEEEecCcc
Confidence 567788999999999999999999999999988887543 56899999763
No 75
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=71.80 E-value=11 Score=40.47 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHH
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAEN 205 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~ 205 (567)
+.+...++++.+++.+.|.+|-|||--.++.|..++-.
T Consensus 60 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~ia~~ 97 (374)
T cd08183 60 SVELVDAAVAEARNAGCDVVIAIGGGSVIDAGKAIAAL 97 (374)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHH
Confidence 35778999999999999999999999999888777643
No 76
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.72 E-value=8.2 Score=40.54 Aligned_cols=53 Identities=25% Similarity=0.317 Sum_probs=38.5
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHH--HHHHHHHHHHH
Q 042388 183 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTAC--KIFSEMIGNVM 252 (567)
Q Consensus 183 ~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~--k~~ae~I~ni~ 252 (567)
+.|.+|++|||||+-.|+.... ..+++|+||.. -++||-|.. +-+.+++..+.
T Consensus 62 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~Pvlgin~------------G~lGFl~~~~~~~~~~~l~~~~ 116 (295)
T PRK01231 62 VCDLVIVVGGDGSLLGAARALA-----RHNVPVLGINR------------GRLGFLTDIRPDELEFKLAEVL 116 (295)
T ss_pred CCCEEEEEeCcHHHHHHHHHhc-----CCCCCEEEEeC------------CcccccccCCHHHHHHHHHHHH
Confidence 6899999999999888765432 34678999985 278998864 34555666664
No 77
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=71.03 E-value=10 Score=40.31 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccC
Q 042388 168 TPEQFKQAEETAKKLDL---DGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 222 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~i---d~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 222 (567)
+.+.++++++.+++.++ |.+|-|||--.++.|..+|-.+. + .+++|.||-|.
T Consensus 67 ~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~~-r--gip~i~VPTT~ 121 (345)
T cd08195 67 SLETLEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFVAATYM-R--GIDFIQIPTTL 121 (345)
T ss_pred CHHHHHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHHHHHHh-c--CCCeEEcchhH
Confidence 56889999999999999 99999999988888887775332 2 46899999876
No 78
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.93 E-value=4.8 Score=42.55 Aligned_cols=53 Identities=25% Similarity=0.364 Sum_probs=38.5
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHH--HHHHHHHHHHH
Q 042388 183 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTAC--KIFSEMIGNVM 252 (567)
Q Consensus 183 ~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~--k~~ae~I~ni~ 252 (567)
+.|.+|++|||||+-.|+.... ..+++|+||.. -++||-|.. +-+-+++..+.
T Consensus 72 ~~D~vi~lGGDGT~L~aar~~~-----~~~~PilGIN~------------G~lGFL~~~~~~~~~~~l~~i~ 126 (306)
T PRK03372 72 GCELVLVLGGDGTILRAAELAR-----AADVPVLGVNL------------GHVGFLAEAEAEDLDEAVERVV 126 (306)
T ss_pred CCCEEEEEcCCHHHHHHHHHhc-----cCCCcEEEEec------------CCCceeccCCHHHHHHHHHHHH
Confidence 6899999999999988876633 23678999974 278998865 34445555554
No 79
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.88 E-value=5.2 Score=41.98 Aligned_cols=43 Identities=28% Similarity=0.427 Sum_probs=33.0
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHH
Q 042388 183 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACK 242 (567)
Q Consensus 183 ~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k 242 (567)
+.|.+|++|||||+-.|+.... ..+++|+||-. -++||-|...
T Consensus 63 ~~d~vi~lGGDGT~L~aa~~~~-----~~~~Pilgin~------------G~lGFl~~~~ 105 (292)
T PRK03378 63 QADLAIVVGGDGNMLGAARVLA-----RYDIKVIGINR------------GNLGFLTDLD 105 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCeEEEEEC------------CCCCcccccC
Confidence 6899999999999888776532 23578999863 2789988765
No 80
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=70.87 E-value=15 Score=33.14 Aligned_cols=95 Identities=15% Similarity=0.182 Sum_probs=57.6
Q ss_pred CCCEEEEEeCCcccccCC-CEEEc-CccccccccccCCcccccccCCCCC-ChHHHHHHHHHHHHcCCCEEEEecCchhH
Q 042388 120 NGSKLYGFKGGPAGIMKC-KYVEL-STEYIYPYRNQGGFDMICSGRDKIE-TPEQFKQAEETAKKLDLDGLVVIGGDDSN 196 (567)
Q Consensus 120 ~~~~v~Gf~~G~~GLl~~-~~~eL-t~~~v~~~~n~GG~~~LGS~R~k~~-~~e~~~~~~~~l~~~~id~LViIGGddS~ 196 (567)
++.+|++ |-.||-+. +++.+ ...++..|..-|-+ +|.|+..-.. +++.+.+.++.+.+.++-||++--|..--
T Consensus 10 ~~~~lva---G~~gL~r~V~~v~v~e~~d~~~~l~~gEl-vlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~ 85 (123)
T PF07905_consen 10 KDAKLVA---GENGLDRPVRWVHVMEAPDPSDWLRGGEL-VLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLD 85 (123)
T ss_pred CCCEEec---CCccCCCcEEEEEEeecCCHHHhCCCCeE-EEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccc
Confidence 3445555 44554332 22222 23467788766655 6666654333 45669999999999999999995552222
Q ss_pred HHHHHHHHHHhcCCCCccEEEecc
Q 042388 197 TNACLLAENFRSKDMKTRVIGCPK 220 (567)
Q Consensus 197 t~A~~Lae~~~~~g~~i~VIgVPK 220 (567)
.--..+.+++.+++ ++++.+|.
T Consensus 86 ~iP~~~i~~A~~~~--lPli~ip~ 107 (123)
T PF07905_consen 86 EIPEEIIELADELG--LPLIEIPW 107 (123)
T ss_pred cCCHHHHHHHHHcC--CCEEEeCC
Confidence 33334445554444 68999996
No 81
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=70.30 E-value=1.1e+02 Score=29.94 Aligned_cols=86 Identities=15% Similarity=0.174 Sum_probs=50.9
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChH
Q 042388 91 KIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPE 170 (567)
Q Consensus 91 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e 170 (567)
+|||+...-.-|=...++.|+-++++.. +.++.- ... + .+++
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~------------------------~~~-~-----------~~~~ 42 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEAL--GGDLRV------------------------YDA-G-----------GDDA 42 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHc--CCEEEE------------------------ECC-C-----------CCHH
Confidence 5888888777777888888888776542 222110 000 1 1234
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
.....++.+...++|++|+..++.... ...+ +.+.+.| ++||.+
T Consensus 43 ~~~~~l~~~~~~~vdgii~~~~~~~~~-~~~i-~~~~~~~--ipvV~~ 86 (273)
T cd06305 43 KQADQIDQAIAQKVDAIIIQHGRAEVL-KPWV-KRALDAG--IPVVAF 86 (273)
T ss_pred HHHHHHHHHHHcCCCEEEEecCChhhh-HHHH-HHHHHcC--CCEEEe
Confidence 445667777778999999998764322 2223 2334444 567765
No 82
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=69.76 E-value=11 Score=40.52 Aligned_cols=48 Identities=19% Similarity=0.246 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEeccc
Q 042388 169 PEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT 221 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT 221 (567)
.+..+++++.+++.+.|.+|-|||--+++.|..++-. .++++|.||-|
T Consensus 70 ~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~-----~~~p~i~IPTt 117 (366)
T PRK09423 70 DNEIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADY-----LGVPVVIVPTI 117 (366)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHH-----cCCCEEEeCCc
Confidence 4578899999999999999999999888888877743 25789999976
No 83
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=69.66 E-value=11 Score=40.06 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccC
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 222 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 222 (567)
+.+...++++.+++.+.|.+|-|||--.++.|..++.. ..+++|.||-|-
T Consensus 62 ~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~-----~~~p~i~VPTta 111 (349)
T cd08550 62 STEEVVKALCGAEEQEADVIIGVGGGKTLDTAKAVADR-----LDKPIVIVPTIA 111 (349)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHH-----cCCCEEEeCCcc
Confidence 45778999999999999999999999999988888743 246899999763
No 84
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=69.29 E-value=15 Score=39.75 Aligned_cols=54 Identities=26% Similarity=0.271 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhc---------------CCCCccEEEeccc
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRS---------------KDMKTRVIGCPKT 221 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~---------------~g~~i~VIgVPKT 221 (567)
+.+...++++.+++.+.|.+|-|||--+++.|..++-.... ..-.+++|.||-|
T Consensus 72 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTT 140 (382)
T PRK10624 72 TIEVVKEGVEVFKASGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTT 140 (382)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCC
Confidence 35778899999999999999999999889888665432211 0123688888865
No 85
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=68.96 E-value=12 Score=39.98 Aligned_cols=52 Identities=23% Similarity=0.367 Sum_probs=42.7
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccC
Q 042388 168 TPEQFKQAEETAKKLDL---DGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 222 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~i---d~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 222 (567)
+.+..+++++.+++.++ |.+|.|||--.++.|..+|-.+. + .+++|.||-|.
T Consensus 74 ~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~~-~--gip~i~IPTT~ 128 (358)
T PRK00002 74 SLETLEKIYDALLEAGLDRSDTLIALGGGVIGDLAGFAAATYM-R--GIRFIQVPTTL 128 (358)
T ss_pred CHHHHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHHHHHhc-C--CCCEEEcCchh
Confidence 56889999999999988 99999999988888877764322 2 46899999986
No 86
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=68.07 E-value=23 Score=39.15 Aligned_cols=158 Identities=18% Similarity=0.183 Sum_probs=83.0
Q ss_pred CChhHHHhhCCcccCCCeeEEecCCcc------cccCCCCCcEEEEEecCCCCchhhH-HHH-------HHHHHHH-Hhc
Q 042388 55 GNPEEIKKLFPKLFGQPSARLVECDPK------ACSMENKSLKIGVVLSGGQAPGGHN-VIS-------GIFDYLQ-ERT 119 (567)
Q Consensus 55 ~~~~~i~~~fp~~~~~p~~~~~~~~~~------~~~~~~~~~~IgIv~sGG~aPG~nn-vI~-------gl~~~l~-~~~ 119 (567)
+-.+.+..|...+.|.|+.+-.+-..- ...+.-..-||++|||||..|=+|- -|. |.++--- ...
T Consensus 183 ~a~Rav~mllkkl~ge~f~te~pmP~fd~v~p~p~~kdL~~akIALVTsgGivPkgnPd~i~ss~A~~yg~Y~i~g~~~l 262 (431)
T TIGR01918 183 GSERAVDMLVKKLKGEEFQTEYPMPVFDRVEPAAAIKDLSKAKIAVVTSGGIVPKDNPDRIESSSASKYGMYDITGLDRL 262 (431)
T ss_pred cHHHHHHHHHHhccCCcccccCCCCCCCcCCCCccCCchhhCEEEEEecCCcccCCCCCcccccCCCcceeEeCCCcccc
Confidence 345566666666666655444332100 0122344569999999999997763 221 1110000 000
Q ss_pred CCCEEEEEeCCcccccC----CCEEEcCc------c-c---cc-cccccCCcccccccCCCCCChHHHHHHHHHHHHcCC
Q 042388 120 NGSKLYGFKGGPAGIMK----CKYVELST------E-Y---IY-PYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDL 184 (567)
Q Consensus 120 ~~~~v~Gf~~G~~GLl~----~~~~eLt~------~-~---v~-~~~n~GG~~~LGS~R~k~~~~e~~~~~~~~l~~~~i 184 (567)
...+..-.|+||+--.- |.++.|+. + . +. .|..+-|. ||.+... .+.-..+++.|++-++
T Consensus 263 ~~~~~~~~HgGYD~~~~n~Dpn~v~PlD~LreLekEG~IG~L~~~fyst~G~---gt~~~~a--~~~g~eIa~~Lk~dgV 337 (431)
T TIGR01918 263 EGGVYETAHGGFDPAYANADPDRVVPVDVLRDYEKEGKIGELHEYFYSTVGN---GTTVAES--KQFAKEFVVELKQGGV 337 (431)
T ss_pred CccceEEeccccChHHHhcCCCeeeeHHHHHHHHHcCCcccccCeeEEcCCC---CchHHHH--HHHHHHHHHHHHHcCC
Confidence 11222333445443321 11333331 0 0 11 12222222 3333222 2446788999999999
Q ss_pred CEEEEecCchhHHH-HHHHHHHHhcCCCCccEEE
Q 042388 185 DGLVVIGGDDSNTN-ACLLAENFRSKDMKTRVIG 217 (567)
Q Consensus 185 d~LViIGGddS~t~-A~~Lae~~~~~g~~i~VIg 217 (567)
|++|....-|+-+. ++..++++++.|+++-.|+
T Consensus 338 DAVILTstCgtC~r~~a~m~keiE~~GiPvv~~~ 371 (431)
T TIGR01918 338 DAVILTSTUGTCTRCGATMVKEIERAGIPVVHMC 371 (431)
T ss_pred CEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEe
Confidence 99999999888554 5667888888886644443
No 87
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=67.61 E-value=16 Score=39.13 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHH
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAEN 205 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~ 205 (567)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.
T Consensus 66 ~~~~v~~~~~~~~~~~~d~IIaiGGGSviD~aK~ia~~ 103 (370)
T cd08192 66 TEAAVEAGLAAYRAGGCDGVIAFGGGSALDLAKAVALM 103 (370)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHH
Confidence 56789999999999999999999999888888777654
No 88
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=66.87 E-value=16 Score=39.25 Aligned_cols=107 Identities=15% Similarity=0.127 Sum_probs=68.7
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHH
Q 042388 168 TPEQFKQAEETAKKLDL---DGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIF 244 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~i---d~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ 244 (567)
+.+..+++.+.+.+.+. |.+|.|||--+.+.|..+|-.+. +| ++.|.||.|.-- .++.++|--|+++..
T Consensus 58 ~l~~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~vA~~~~-rg--i~~i~iPTTlla-----~vds~ig~k~~vn~~ 129 (346)
T cd08196 58 SLEAVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFVASIYM-RG--VSWSFVPTTLLA-----QVDSCIGSKSSINVG 129 (346)
T ss_pred CHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHHH-cC--CCeEEecccHHH-----hhhccccccceecCC
Confidence 56889999999999999 89999999888888877765433 34 579999987521 122456655555532
Q ss_pred HHHHHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHH
Q 042388 245 SEMIGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDII 312 (567)
Q Consensus 245 ae~I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I 312 (567)
. .|. ..+--..|+.|++--+... ..+-.++...++++|
T Consensus 130 ~-------------~Kn----------------~ig~f~~P~~viiD~~~l~-tlp~~~~~~G~aEii 167 (346)
T cd08196 130 P-------------YKN----------------LVGNFYPPREIYIDPPFLS-TLDEKEIYSGLGEAL 167 (346)
T ss_pred C-------------CCc----------------ccccCCCCCEEEEchHHhc-cCCHHHHHhhHHHHH
Confidence 2 111 0122346888887444332 234455667777776
No 89
>COG1844 Uncharacterized protein conserved in archaea [Function unknown]
Probab=66.25 E-value=34 Score=31.20 Aligned_cols=65 Identities=20% Similarity=0.312 Sum_probs=45.6
Q ss_pred EEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhhcCCeeEEE
Q 042388 186 GLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDARSTGKYYHFV 265 (567)
Q Consensus 186 ~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~ni~~da~S~~k~~~fV 265 (567)
.+++|=+|..-..-..|++- ..++ .+++.|=|+-|++++. -...++++|....-+.++ .++
T Consensus 2 t~vliR~Ds~~Kil~ALaDl-eRya-giki~gkPrii~p~~a-------------D~~~~~ilGe~R~k~~~a----a~a 62 (125)
T COG1844 2 TIVLIRADSYDKILTALADL-ERYA-GIKIRGKPRIIPPELA-------------DEILSSILGEVRKKCKVA----AVA 62 (125)
T ss_pred eEEEEecCcHHHHHHHHHHH-HHhc-CceeecCCcccChhhH-------------HHHHHHHHHHHhcccchh----hee
Confidence 47888888887776677763 3334 5789999999999985 456777888775444443 466
Q ss_pred EecC
Q 042388 266 RLMG 269 (567)
Q Consensus 266 evMG 269 (567)
|+-+
T Consensus 63 ~v~~ 66 (125)
T COG1844 63 EVEE 66 (125)
T ss_pred eecC
Confidence 6643
No 90
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=66.24 E-value=18 Score=38.70 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=31.8
Q ss_pred ChHHHHHHHHHHHHcC--CCEEEEecCchhHHHHHHHHHH
Q 042388 168 TPEQFKQAEETAKKLD--LDGLVVIGGDDSNTNACLLAEN 205 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~--id~LViIGGddS~t~A~~Lae~ 205 (567)
+.+..+++.+.+++.+ .|.+|-|||--.++.|..++-.
T Consensus 63 t~~~v~~~~~~~~~~~~~~D~IIaiGGGSviD~aK~ia~~ 102 (355)
T TIGR03405 63 DVAQLDGLYARLWGDEGACDLVIALGGGSVIDTAKVLAVG 102 (355)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHH
Confidence 4577889999999888 9999999999988888766543
No 91
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=65.86 E-value=1.1e+02 Score=32.46 Aligned_cols=166 Identities=11% Similarity=0.106 Sum_probs=92.3
Q ss_pred EEEecCCCCchh-hHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCC-hH
Q 042388 93 GVVLSGGQAPGG-HNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIET-PE 170 (567)
Q Consensus 93 gIv~sGG~aPG~-nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~-~e 170 (567)
-|++|||+.==. +.-+..+++++++. +..+.+.+ |.+..+.+- .-+|++.++.++..|=...++..-..... .+
T Consensus 139 ~VilSGGDPl~~~~~~L~~ll~~l~~i-~~v~~iri--~Tr~~v~~p-~rit~ell~~L~~~g~~v~i~l~~~h~~el~~ 214 (321)
T TIGR03822 139 EVILTGGDPLVLSPRRLGDIMARLAAI-DHVKIVRF--HTRVPVADP-ARVTPALIAALKTSGKTVYVALHANHARELTA 214 (321)
T ss_pred EEEEeCCCcccCCHHHHHHHHHHHHhC-CCccEEEE--eCCCcccCh-hhcCHHHHHHHHHcCCcEEEEecCCChhhcCH
Confidence 488999986644 35788888888653 32333333 344443322 33577777777777622234433222210 25
Q ss_pred HHHHHHHHHHHcCCCEEE---Ee-cCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHH
Q 042388 171 QFKQAEETAKKLDLDGLV---VI-GGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSE 246 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LV---iI-GGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae 246 (567)
+..++++.|++.++.-++ ++ |=|++......|.+.+.+.|+..-.+....-..+ + --|.+....+-+
T Consensus 215 ~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g----~-----~~f~~~~~~~~~ 285 (321)
T TIGR03822 215 EARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLDLAPG----T-----AHFRVTIEEGQA 285 (321)
T ss_pred HHHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCC----c-----ccccCcHHHHHH
Confidence 677888999999987643 44 5566666777777777777765333333322222 1 123344555555
Q ss_pred HHHHHHHHHhhcCCeeEEEEecCCC
Q 042388 247 MIGNVMTDARSTGKYYHFVRLMGRA 271 (567)
Q Consensus 247 ~I~ni~~da~S~~k~~~fVevMGR~ 271 (567)
++..+..-....-.--+++++.|..
T Consensus 286 i~~~l~~~~~g~~~p~~v~~~~~~~ 310 (321)
T TIGR03822 286 LVRALRGRISGLAQPTYVLDIPGGH 310 (321)
T ss_pred HHHHHHHhCCCCcceeEEEeCCCCC
Confidence 5555543332222223577877754
No 92
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=65.59 E-value=18 Score=38.93 Aligned_cols=52 Identities=21% Similarity=0.327 Sum_probs=43.0
Q ss_pred ChHHHHHHHHHHHHcCC----CEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccC
Q 042388 168 TPEQFKQAEETAKKLDL----DGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 222 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~i----d~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 222 (567)
+.+..+++.+.+.+.++ |.+|-|||--.++.|..+|-.+. + +++.|.||-|.
T Consensus 69 s~~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~~A~~~~-r--g~p~i~VPTT~ 124 (354)
T cd08199 69 TMDTVLKIVDALDAFGISRRREPVLAIGGGVLTDVAGLAASLYR-R--GTPYVRIPTTL 124 (354)
T ss_pred CHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhc-C--CCCEEEEcCcc
Confidence 56788999999999999 99999999888888877775433 2 46899999986
No 93
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=65.45 E-value=20 Score=38.90 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcC-------------CCCccEEEeccc
Q 042388 169 PEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSK-------------DMKTRVIGCPKT 221 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~-------------g~~i~VIgVPKT 221 (567)
.++..++++.+++.+.|.+|-|||--.++.|..++-.+... +-.+++|.||-|
T Consensus 65 ~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt 130 (386)
T cd08191 65 RSELCDAASAAARAGPDVIIGLGGGSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTT 130 (386)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCC
Confidence 45577778889999999999999999999988877543211 114678888854
No 94
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=65.09 E-value=50 Score=33.29 Aligned_cols=125 Identities=12% Similarity=0.157 Sum_probs=62.4
Q ss_pred cCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCC---CC-------CCChHhHHHHHHHHHHHHHHHHhhcCC
Q 042388 191 GGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEV---PT-------SFGFDTACKIFSEMIGNVMTDARSTGK 260 (567)
Q Consensus 191 GGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~i---e~-------S~GFdTA~k~~ae~I~ni~~da~S~~k 260 (567)
||.|-=|.|..||-++.++|.++.|| |-|-.++-. +. ...++.....-...+......+.....
T Consensus 11 GGvGKTT~a~nLA~~la~~G~~Vlli------D~DpQ~s~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~y 84 (231)
T PRK13849 11 GGAGKTTALMGLCAALASDGKRVALF------EADENRPLTRWKENALRSNTWDPACEVYAADELPLLEAAYEDAELQGF 84 (231)
T ss_pred CCccHHHHHHHHHHHHHhCCCcEEEE------eCCCCCCHHHHHHhhccccCCCccceecCCCHHHHHHHHHHHHhhCCC
Confidence 88888888999998888888765444 666654310 00 000000000000112222122222222
Q ss_pred eeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhH---HHHHHHHHHHHHHcCCCeEEEEE
Q 042388 261 YYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNV---TDYITDIICKRSEAGYNYGVILI 327 (567)
Q Consensus 261 ~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~i---v~~i~d~I~~R~~~gk~~gvIli 327 (567)
-|.||-+-|.. |.++..+ |+ .+|+||||=.+... ++... ++.+.+. .++...+..+.+++-
T Consensus 85 D~iiID~pp~~-~~~~~~a-l~-~aD~vliP~~ps~~--d~~~~~~~~~~v~~~-~~~~~~~l~~~iv~~ 148 (231)
T PRK13849 85 DYALADTHGGS-SELNNTI-IA-SSNLLLIPTMLTPL--DIDEALSTYRYVIEL-LLSENLAIPTAILRQ 148 (231)
T ss_pred CEEEEeCCCCc-cHHHHHH-HH-HCCEEEEeccCcHH--HHHHHHHHHHHHHHH-HHHhCCCCCeEEEEE
Confidence 36788887755 5665543 32 56999999776543 33322 2333222 223344566764443
No 95
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=64.32 E-value=20 Score=38.80 Aligned_cols=54 Identities=17% Similarity=0.130 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcC-------------CCCccEEEeccc
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSK-------------DMKTRVIGCPKT 221 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~-------------g~~i~VIgVPKT 221 (567)
+.+..+++++.++..+.|++|-|||--.++.|..++-..... ...+++|.||-|
T Consensus 71 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 137 (382)
T cd08187 71 RLETVREGIELCKEEKVDFILAVGGGSVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTL 137 (382)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCC
Confidence 457789999999999999999999988888887665432110 124678888854
No 96
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=64.13 E-value=20 Score=39.11 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=32.0
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHH
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAE 204 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae 204 (567)
+.+..+++++.+++.+.|.+|-+||--+++.|..++=
T Consensus 71 ~~~~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~ 107 (377)
T COG1454 71 TIETVEAGAEVAREFGPDTIIALGGGSVIDAAKAIAL 107 (377)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHH
Confidence 4677899999999999999999999888888776653
No 97
>PRK11914 diacylglycerol kinase; Reviewed
Probab=64.08 E-value=20 Score=37.23 Aligned_cols=61 Identities=25% Similarity=0.272 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 169 PEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
+.+..+.++.+.+.+.|.+|++|||||...+.. .+. +.++++--+|.==-||+. .++|..+
T Consensus 50 ~~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv~---~l~--~~~~~lgiiP~GT~NdfA-----r~lg~~~ 110 (306)
T PRK11914 50 AHDARHLVAAALAKGTDALVVVGGDGVISNALQ---VLA--GTDIPLGIIPAGTGNDHA-----REFGIPT 110 (306)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCchHHHHHhH---Hhc--cCCCcEEEEeCCCcchhH-----HHcCCCC
Confidence 344555565566788899999999999876642 222 335677888987788887 4677653
No 98
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=63.87 E-value=20 Score=39.25 Aligned_cols=36 Identities=36% Similarity=0.397 Sum_probs=31.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHH
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLA 203 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~La 203 (567)
+.+...++++.+++.+.|.+|-|||--.++.|..++
T Consensus 65 ~~~~v~~~~~~~~~~~~D~IIaiGGGSviD~AKaia 100 (414)
T cd08190 65 TDESFKDAIAFAKKGQFDAFVAVGGGSVIDTAKAAN 100 (414)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 457899999999999999999999999898887665
No 99
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=63.63 E-value=23 Score=38.29 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=31.0
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHH
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLA 203 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~La 203 (567)
+.++..++++.+++.+.|.+|-|||--.++.|..++
T Consensus 70 ~~~~v~~~~~~~~~~~~d~IIaiGGGsviD~AK~ia 105 (377)
T cd08188 70 RDEEVMAGAELYLENGCDVIIAVGGGSPIDCAKGIG 105 (377)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHH
Confidence 457788899999999999999999999998885554
No 100
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=63.45 E-value=8.6 Score=40.30 Aligned_cols=52 Identities=23% Similarity=0.244 Sum_probs=36.5
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHH--HHHHHHHHH
Q 042388 183 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACK--IFSEMIGNV 251 (567)
Q Consensus 183 ~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k--~~ae~I~ni 251 (567)
+.|.+|++|||||+-.|..... +.+++++||-. -++||-|... -+-+.+..+
T Consensus 63 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~pilGIn~------------G~lGFL~~~~~~~~~~~l~~~ 116 (291)
T PRK02155 63 RADLAVVLGGDGTMLGIGRQLA-----PYGVPLIGINH------------GRLGFITDIPLDDMQETLPPM 116 (291)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEcC------------CCccccccCCHHHHHHHHHHH
Confidence 5799999999999988776532 34678999872 2789988633 334444444
No 101
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=61.73 E-value=1.7e+02 Score=28.79 Aligned_cols=88 Identities=17% Similarity=0.091 Sum_probs=51.5
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChH
Q 042388 91 KIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPE 170 (567)
Q Consensus 91 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e 170 (567)
|||||..--..|-...++.|+-+.+++. +.++. +... .+ -.+++
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~--g~~~~------------------------~~~~-~~---------~~~~~ 44 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKEL--GVKVT------------------------FQGP-AS---------ETDVA 44 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHc--CCEEE------------------------EecC-cc---------CCCHH
Confidence 6888886556777888888888876541 22221 0000 00 01344
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
...+.++.+...++||+|+.+.+.... ...+ +.+.+.+ ++||.+
T Consensus 45 ~~~~~i~~l~~~~vdgvii~~~~~~~~-~~~l-~~~~~~~--ipvV~~ 88 (273)
T cd06310 45 GQVNLLENAIARGPDAILLAPTDAKAL-VPPL-KEAKDAG--IPVVLI 88 (273)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCChhhh-HHHH-HHHHHCC--CCEEEe
Confidence 556778888889999999998764321 1223 2333334 567765
No 102
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=61.52 E-value=1.4e+02 Score=29.40 Aligned_cols=45 Identities=13% Similarity=0.051 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 170 EQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 170 e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
+.....++.+...++|++|+.+.+.+... ..+ +.+.+++ ++||.+
T Consensus 43 ~~~~~~i~~~~~~~vdgiii~~~~~~~~~-~~~-~~~~~~~--ipvV~~ 87 (270)
T cd06308 43 SKQVADIENFIRQGVDLLIISPNEAAPLT-PVV-EEAYRAG--IPVILL 87 (270)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCchhhch-HHH-HHHHHCC--CCEEEe
Confidence 33455667778899999999876643211 223 2233344 566655
No 103
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=61.43 E-value=18 Score=38.57 Aligned_cols=49 Identities=12% Similarity=0.195 Sum_probs=40.7
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEeccc
Q 042388 167 ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT 221 (567)
Q Consensus 167 ~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT 221 (567)
.+.+..+++++.+++ +.|.+|-|||--.++.|..++.. ..+++|.||-|
T Consensus 65 pt~~~v~~~~~~~~~-~~d~IIaIGGGs~~D~aK~vA~~-----~~~p~i~IPTT 113 (348)
T cd08175 65 ADEKAVGRVLKELER-DTDLIIAVGSGTINDITKYVSYK-----TGIPYISVPTA 113 (348)
T ss_pred CCHHHHHHHHHHhhc-cCCEEEEECCcHHHHHHHHHHHh-----cCCCEEEecCc
Confidence 466788888888888 99999999998888888877732 24689999998
No 104
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=60.93 E-value=22 Score=37.69 Aligned_cols=52 Identities=15% Similarity=0.060 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCC
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGD 225 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDND 225 (567)
+.+..+++++.+++ +.|.+|-|||--.++.|..+| +++ .+++|.||-|.-+|
T Consensus 66 ~~~~v~~~~~~~~~-~~d~IIaiGGGsv~D~aK~iA-~~~----gip~I~VPTT~~~~ 117 (332)
T cd08549 66 DEYELGEVLIKLDK-DTEFLLGIGSGTIIDLVKFVS-FKV----GKPFISVPTAPSMD 117 (332)
T ss_pred CHHHHHHHHHHhhc-CCCEEEEECCcHHHHHHHHHH-HHc----CCCEEEeCCCcccC
Confidence 56778888888888 999999999988888888777 432 46899999998554
No 105
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=60.23 E-value=26 Score=37.47 Aligned_cols=52 Identities=25% Similarity=0.327 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHHHHcC---CCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccC
Q 042388 168 TPEQFKQAEETAKKLD---LDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 222 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~---id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 222 (567)
+.+..+++.+.+.+++ .|.+|.|||--.++.|..+|-.+. + .+++|.||-|.
T Consensus 65 ~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~~-r--gip~i~VPTTl 119 (344)
T cd08169 65 TFETVTRILERAIALGANRRTAIVAVGGGATGDVAGFVASTLF-R--GIAFIRVPTTL 119 (344)
T ss_pred CHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHhc-c--CCcEEEecCCc
Confidence 5678889999999887 899999999888888877775432 2 46899999984
No 106
>PLN02834 3-dehydroquinate synthase
Probab=59.95 E-value=25 Score=39.01 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHHcCCC---EEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccC
Q 042388 168 TPEQFKQAEETAKKLDLD---GLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 222 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id---~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 222 (567)
+.+.++++++.+.++++| .+|.|||--.++.|..+|-.+. + ++++|.||-|.
T Consensus 145 sl~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak~~A~~y~-r--giplI~VPTTl 199 (433)
T PLN02834 145 DMETLMKVFDKALESRLDRRCTFVALGGGVIGDMCGFAAASYQ-R--GVNFVQIPTTV 199 (433)
T ss_pred CHHHHHHHHHHHHhcCCCcCcEEEEECChHHHHHHHHHHHHhc-C--CCCEEEECCcC
Confidence 568889999999999998 9999999888888876664332 2 46899999884
No 107
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=59.67 E-value=27 Score=37.67 Aligned_cols=52 Identities=27% Similarity=0.306 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHHHHcCCC---EEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccC
Q 042388 168 TPEQFKQAEETAKKLDLD---GLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 222 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id---~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 222 (567)
+.+..+++.+.+++.++| .+|.|||--.++.|..+|-.+. + .+++|.||-|.
T Consensus 66 ~~~~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~A~~~~-r--gip~I~IPTTl 120 (355)
T cd08197 66 TLSTLSDLVERALALGATRRSVIVALGGGVVGNIAGLLAALLF-R--GIRLVHIPTTL 120 (355)
T ss_pred CHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHhc-c--CCCEEEecCcc
Confidence 557889999999999999 9999999888888777664322 2 46899999874
No 108
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=59.61 E-value=1.6e+02 Score=27.78 Aligned_cols=120 Identities=20% Similarity=0.205 Sum_probs=64.0
Q ss_pred EEEEEecCC-CCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCCh
Q 042388 91 KIGVVLSGG-QAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETP 169 (567)
Q Consensus 91 ~IgIv~sGG-~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~ 169 (567)
+||+|+... ..+-...++.|+.++++.. |. | =++. +. ... .++
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~~~~~~~~~~-----------g~-~---~~~~-----------------~~-~~~---~~~ 44 (269)
T cd01391 1 KIGVLLPLSGSAPFGAQLLAGIELAAEEI-----------GR-G---LEVI-----------------LA-DSQ---SDP 44 (269)
T ss_pred CceEEeecCCCcHHHHHHHHHHHHHHHHh-----------CC-c---eEEE-----------------Ee-cCC---CCH
Confidence 588888765 6777788888888776543 10 0 0000 00 000 123
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCC-CCCCCCChHhHHHHHHHHH
Q 042388 170 EQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCK-EVPTSFGFDTACKIFSEMI 248 (567)
Q Consensus 170 e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~-~ie~S~GFdTA~k~~ae~I 248 (567)
++..++++.+...++|++++.+.+..... +.+.+.+.+ +++|.+=.+.+...... ..-..+.+..+.+..++.+
T Consensus 45 ~~~~~~~~~~~~~~~d~ii~~~~~~~~~~---~~~~~~~~~--ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 119 (269)
T cd01391 45 ERALEALRDLIQQGVDGIIGPPSSSSALA---VVELAAAAG--IPVVSLDATAPDLTGYPYVFRVGPDNEQAGEAAAEYL 119 (269)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCHHHHH---HHHHHHHcC--CcEEEecCCCCccCCCceEEEEcCCcHHHHHHHHHHH
Confidence 44566666777779999998887765433 334444444 56777655443311111 1112444455555555544
Q ss_pred HHH
Q 042388 249 GNV 251 (567)
Q Consensus 249 ~ni 251 (567)
...
T Consensus 120 ~~~ 122 (269)
T cd01391 120 AEK 122 (269)
T ss_pred HHh
Confidence 433
No 109
>PLN02727 NAD kinase
Probab=59.27 E-value=10 Score=45.51 Aligned_cols=53 Identities=25% Similarity=0.281 Sum_probs=38.7
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHH--HHHHHHHHHH
Q 042388 183 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACK--IFSEMIGNVM 252 (567)
Q Consensus 183 ~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k--~~ae~I~ni~ 252 (567)
++|.+|+||||||+-.|+.+.. +..++|+||-. -++||-|-.. -+.+.+.+|.
T Consensus 743 ~~DLVIvLGGDGTlLrAar~~~-----~~~iPILGINl------------GrLGFLTdi~~ee~~~~L~~Il 797 (986)
T PLN02727 743 RVDFVACLGGDGVILHASNLFR-----GAVPPVVSFNL------------GSLGFLTSHYFEDFRQDLRQVI 797 (986)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEeC------------CCccccccCCHHHHHHHHHHHH
Confidence 5899999999999988877642 34678999863 2889988643 3445555554
No 110
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=58.53 E-value=47 Score=35.81 Aligned_cols=49 Identities=18% Similarity=0.279 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHHHHc----CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 168 TPEQFKQAEETAKKL----DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~----~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
+++++..+.+.+++. +.|++||.-|-|||.-.+.+-....+. +.+||-.
T Consensus 86 t~~dw~~la~~I~~~~~~~~~~GiVVtHGTDTme~tA~~Lsl~l~~--~kPVVlT 138 (349)
T TIGR00520 86 NEEVLLKLAKGINELLASDDYDGIVITHGTDTLEETAYFLDLTVKS--DKPVVIV 138 (349)
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEeCCcccHHHHHHHHHHHcCC--CCCEEEE
Confidence 567777777666554 699999999999998877655554443 3455543
No 111
>PRK13054 lipid kinase; Reviewed
Probab=57.75 E-value=22 Score=36.93 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCCCEEEEecCchhHHHHH-HHHHHHhcCCCCccEEEecccCcCCCC
Q 042388 173 KQAEETAKKLDLDGLVVIGGDDSNTNAC-LLAENFRSKDMKTRVIGCPKTIDGDLK 227 (567)
Q Consensus 173 ~~~~~~l~~~~id~LViIGGddS~t~A~-~Lae~~~~~g~~i~VIgVPKTIDNDL~ 227 (567)
...++.+...+.|.+|++|||||...+. .|.+. ..+.++++--+|.==-||+.
T Consensus 46 ~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~~--~~~~~~~lgiiP~GTgNdfa 99 (300)
T PRK13054 46 ARYVEEALALGVATVIAGGGDGTINEVATALAQL--EGDARPALGILPLGTANDFA 99 (300)
T ss_pred HHHHHHHHHcCCCEEEEECCccHHHHHHHHHHhh--ccCCCCcEEEEeCCcHhHHH
Confidence 3444444457789999999999987764 33221 11334677778987788887
No 112
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=57.73 E-value=24 Score=39.72 Aligned_cols=112 Identities=16% Similarity=0.215 Sum_probs=72.3
Q ss_pred EEEEEeCCcccccCCCEEEcCcccccccccc--CCcccccccCCCCCChHHHHHHHHHHHHcCC---CEEEEecCchhHH
Q 042388 123 KLYGFKGGPAGIMKCKYVELSTEYIYPYRNQ--GGFDMICSGRDKIETPEQFKQAEETAKKLDL---DGLVVIGGDDSNT 197 (567)
Q Consensus 123 ~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~--GG~~~LGS~R~k~~~~e~~~~~~~~l~~~~i---d~LViIGGddS~t 197 (567)
.|+-..++..++ .++.+.++++.+..+... .-..++=..-..-.+-+.++++.+.+.++++ |.+|.+||--..+
T Consensus 173 ~v~~~~~~~~~~-~~~~~ii~d~~v~~ly~~~l~~~~~~~~~ge~~k~l~~v~~~~~~l~~~~~~R~d~viaiGGG~v~D 251 (488)
T PRK13951 173 LVKIILGGFKRV-RNEELVFTTERVEKIYGRYLPENRLLFPDGEEVKTLEHVSRAYYELVRMDFPRGKTIAGVGGGALTD 251 (488)
T ss_pred eEEEeccccccC-CCeEEEEECCcHHHHHHHhhcccEEEecCCCCCCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHH
Confidence 444333334333 356677787776543211 0011111111223467889999999999999 9999999988888
Q ss_pred HHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHH
Q 042388 198 NACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKI 243 (567)
Q Consensus 198 ~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~ 243 (567)
.|-.+|-.+. + .++.|.||-|+-- .+|.|+|-=|++++
T Consensus 252 ~agf~A~~y~-R--Gi~~i~vPTTlla-----~vDssiggK~~vn~ 289 (488)
T PRK13951 252 FTGFVASTFK-R--GVGLSFYPTTLLA-----QVDASVGGKNAIDF 289 (488)
T ss_pred HHHHHHHHHh-c--CCCeEecCccHHH-----HHhcCCCCCeeeeC
Confidence 8877776554 3 4689999999854 34468888777765
No 113
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=57.48 E-value=13 Score=33.46 Aligned_cols=52 Identities=23% Similarity=0.326 Sum_probs=32.7
Q ss_pred CCEEEEecCchhHHHHHHHHHHHhcCCC--CccEEEecccCcCCCCCCCCCCCCChHhHHHH
Q 042388 184 LDGLVVIGGDDSNTNACLLAENFRSKDM--KTRVIGCPKTIDGDLKCKEVPTSFGFDTACKI 243 (567)
Q Consensus 184 id~LViIGGddS~t~A~~Lae~~~~~g~--~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~ 243 (567)
.|.+|++|||||...+. ..+.+... ++++.-+|.==-||+. .++|+.+-...
T Consensus 55 ~~~ivv~GGDGTl~~vv---~~l~~~~~~~~~~l~iiP~GT~N~~a-----r~lg~~~~~~~ 108 (130)
T PF00781_consen 55 PDVIVVVGGDGTLNEVV---NGLMGSDREDKPPLGIIPAGTGNDFA-----RSLGIPSDPEA 108 (130)
T ss_dssp -SEEEEEESHHHHHHHH---HHHCTSTSSS--EEEEEE-SSS-HHH-----HHTT--SSHHH
T ss_pred ccEEEEEcCccHHHHHH---HHHhhcCCCccceEEEecCCChhHHH-----HHcCCCCCcHH
Confidence 48999999999987663 33333333 4588889987788887 47777766655
No 114
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=57.24 E-value=90 Score=35.73 Aligned_cols=85 Identities=24% Similarity=0.272 Sum_probs=59.6
Q ss_pred cCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhhcCCe
Q 042388 182 LDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDARSTGKY 261 (567)
Q Consensus 182 ~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~ni~~da~S~~k~ 261 (567)
.-||+++|-+|--|...|..|-+.+-..|++ -|..=|.||| .+ ..+-+|. ++.....
T Consensus 122 ~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~-yv~fKPGtIe-------------------qI-~svi~IA-ka~P~~p- 178 (717)
T COG4981 122 APIDGVVISAGIPSLEEAVELIEELGDDGFP-YVAFKPGTIE-------------------QI-RSVIRIA-KANPTFP- 178 (717)
T ss_pred CCcceEEEecCCCcHHHHHHHHHHHhhcCce-eEEecCCcHH-------------------HH-HHHHHHH-hcCCCCc-
Confidence 5599999999999999999999988776764 4555677664 11 1222343 4444434
Q ss_pred eEEEEecCCCC-cH----------HHHHhhhhcCCcEEEE
Q 042388 262 YHFVRLMGRAA-SH----------ITLECALQTHPNITII 290 (567)
Q Consensus 262 ~~fVevMGR~a-g~----------LAL~~aLat~pnivlI 290 (567)
.++..-|..| || |+..+.|..++|++++
T Consensus 179 -Iilq~egGraGGHHSweDld~llL~tYs~lR~~~NIvl~ 217 (717)
T COG4981 179 -IILQWEGGRAGGHHSWEDLDDLLLATYSELRSRDNIVLC 217 (717)
T ss_pred -eEEEEecCccCCccchhhcccHHHHHHHHHhcCCCEEEE
Confidence 3556555444 44 7888999999999996
No 115
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=55.93 E-value=26 Score=38.01 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=48.0
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCC
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKC 228 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~ 228 (567)
+.+..+++.+.+...+.|.+|=|||--+.+.|..+|..+ ++++|.||-+=.+|=..
T Consensus 69 ~~~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~~-----~~pfIsvPT~AS~Da~~ 124 (360)
T COG0371 69 SEEEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYRL-----GLPFISVPTIASTDAIT 124 (360)
T ss_pred CHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHc-----CCCEEEecCcccccccc
Confidence 567788888888888999999999999999999888653 67899999988888653
No 116
>PRK13337 putative lipid kinase; Reviewed
Probab=55.88 E-value=20 Score=37.40 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCC
Q 042388 173 KQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLK 227 (567)
Q Consensus 173 ~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 227 (567)
.++++.+...+.|.||++|||||...+.. .+...+.++++--+|.===||+.
T Consensus 47 ~~~a~~~~~~~~d~vvv~GGDGTl~~vv~---gl~~~~~~~~lgiiP~GT~NdfA 98 (304)
T PRK13337 47 TLAAERAVERKFDLVIAAGGDGTLNEVVN---GIAEKENRPKLGIIPVGTTNDFA 98 (304)
T ss_pred HHHHHHHHhcCCCEEEEEcCCCHHHHHHH---HHhhCCCCCcEEEECCcCHhHHH
Confidence 34444455677899999999999877653 22223334567778977778876
No 117
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.49 E-value=13 Score=42.60 Aligned_cols=43 Identities=23% Similarity=0.363 Sum_probs=33.0
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHH
Q 042388 183 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACK 242 (567)
Q Consensus 183 ~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k 242 (567)
++|.+|++|||||+-.|+.... ..+++|+||-. -++||-|...
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGin~------------G~lGFL~~~~ 390 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVN-----GEEIPIICINM------------GTVGFLTEFS 390 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEcC------------CCCCcCcccC
Confidence 4789999999999888776532 23688999863 2899988753
No 118
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=55.14 E-value=29 Score=36.07 Aligned_cols=57 Identities=23% Similarity=0.323 Sum_probs=42.9
Q ss_pred cCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhh
Q 042388 182 LDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDARS 257 (567)
Q Consensus 182 ~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~ni~~da~S 257 (567)
...+.++++||||++-.|+.... ...++|+||=. - ++||-|-.. .+.+..+..+...
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~-----~~~~pilgin~---------G---~lGFLt~~~--~~~~~~~~~~~~~ 110 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLA-----RLDIPVLGINL---------G---HLGFLTDFE--PDELEKALDALLE 110 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhc-----cCCCCEEEEeC---------C---CcccccccC--HHHHHHHHHHHhc
Confidence 67899999999999988876643 23478999842 2 899998887 5666666656655
No 119
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=54.88 E-value=30 Score=37.77 Aligned_cols=50 Identities=20% Similarity=0.310 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHcCCC---EEEEecCchhHHHHHHHHHHHhcCCCCccEEEeccc
Q 042388 169 PEQFKQAEETAKKLDLD---GLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT 221 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~id---~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT 221 (567)
.+...++.+.+.+.+.| .+|.|||--+.+.|..+|-. ..+| ++.|.||-|
T Consensus 94 ~~~v~~i~~~~~~~~~dr~d~IIaiGGGsv~D~ak~iA~~-~~rg--ip~I~IPTT 146 (389)
T PRK06203 94 PALVEALHAAINRHGIDRHSYVLAIGGGAVLDMVGYAAAT-AHRG--VRLIRIPTT 146 (389)
T ss_pred HHHHHHHHHHHHHcCCCCCceEEEeCCcHHHHHHHHHHHH-hcCC--CCEEEEcCC
Confidence 36789999999999998 99999998888887777643 2234 689999999
No 120
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=54.81 E-value=1.4e+02 Score=29.18 Aligned_cols=84 Identities=20% Similarity=0.224 Sum_probs=52.1
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChH
Q 042388 91 KIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPE 170 (567)
Q Consensus 91 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e 170 (567)
.||+|..+-..|....++.|+-+.++.. +..++-+. .. .+.+
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~~-------------------------~~-----------~~~~ 42 (268)
T cd01575 1 LVAVLVPSLSNSVFADVLQGISDVLEAA--GYQLLLGN-------------------------TG-----------YSPE 42 (268)
T ss_pred CEEEEeCCCcchhHHHHHHHHHHHHHHc--CCEEEEec-------------------------CC-----------CCch
Confidence 3789998888888988999988876532 23222111 00 0123
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
...+.++.+...++||+++.+-+.+.. .+ +.+.+. +++||.+
T Consensus 43 ~~~~~~~~l~~~~vdgiii~~~~~~~~---~~-~~~~~~--~ipvv~~ 84 (268)
T cd01575 43 REEELLRTLLSRRPAGLILTGLEHTER---TR-QLLRAA--GIPVVEI 84 (268)
T ss_pred hHHHHHHHHHHcCCCEEEEeCCCCCHH---HH-HHHHhc--CCCEEEE
Confidence 345677778889999999998775421 12 222333 4678876
No 121
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=54.15 E-value=16 Score=32.40 Aligned_cols=93 Identities=24% Similarity=0.323 Sum_probs=57.9
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCCh
Q 042388 90 LKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETP 169 (567)
Q Consensus 90 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~ 169 (567)
+||.||=|||- =|+..+.+. +.....+||.+.+ .||+.-++.+. .+ +.
T Consensus 1 MkVLviGsGgR---EHAia~~l~----~s~~v~~v~~aPG-----------------------N~G~~~~~~~~-~~-~~ 48 (100)
T PF02844_consen 1 MKVLVIGSGGR---EHAIAWKLS----QSPSVEEVYVAPG-----------------------NPGTAELGKNV-PI-DI 48 (100)
T ss_dssp EEEEEEESSHH---HHHHHHHHT----TCTTEEEEEEEE-------------------------TTGGGTSEEE--S--T
T ss_pred CEEEEECCCHH---HHHHHHHHh----cCCCCCEEEEeCC-----------------------CHHHHhhceec-CC-CC
Confidence 47777777753 355555543 3344557776653 14544444332 22 56
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEec
Q 042388 170 EQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCP 219 (567)
Q Consensus 170 e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVP 219 (567)
.+.+.+++.|++++|| |||||-..-+.. =|+++|++.|+ +|+|=.
T Consensus 49 ~d~~~l~~~a~~~~id-lvvvGPE~pL~~--Gl~D~l~~~gi--~vfGP~ 93 (100)
T PF02844_consen 49 TDPEELADFAKENKID-LVVVGPEAPLVA--GLADALRAAGI--PVFGPS 93 (100)
T ss_dssp T-HHHHHHHHHHTTES-EEEESSHHHHHT--THHHHHHHTT---CEES--
T ss_pred CCHHHHHHHHHHcCCC-EEEECChHHHHH--HHHHHHHHCCC--cEECcC
Confidence 7789999999999999 678898887654 47888888774 577643
No 122
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=54.11 E-value=83 Score=33.00 Aligned_cols=96 Identities=15% Similarity=0.175 Sum_probs=61.6
Q ss_pred CCCCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCC
Q 042388 85 MENKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRD 164 (567)
Q Consensus 85 ~~~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~ 164 (567)
-+..+++||||+| -.+.|.+-++..+-+ .++..+++-|. -.-||=
T Consensus 10 lP~~p~~I~vITs-~~gAa~~D~~~~~~~----r~~~~~~~~~p---------------------~~vQG~--------- 54 (319)
T PF02601_consen 10 LPKFPKRIAVITS-PTGAAIQDFLRTLKR----RNPIVEIILYP---------------------ASVQGE--------- 54 (319)
T ss_pred CCCCCCEEEEEeC-CchHHHHHHHHHHHH----hCCCcEEEEEe---------------------cccccc---------
Confidence 3456899999998 556666666666543 45555544332 112332
Q ss_pred CCCChHHHHHHHHHHHHcC----CCEEEEecCchhHHHHHHHHHHHhc---CCCCccEEE
Q 042388 165 KIETPEQFKQAEETAKKLD----LDGLVVIGGDDSNTNACLLAENFRS---KDMKTRVIG 217 (567)
Q Consensus 165 k~~~~e~~~~~~~~l~~~~----id~LViIGGddS~t~A~~Lae~~~~---~g~~i~VIg 217 (567)
..++++-++++.+.+.+ +|.+||+=|-||...-..+.++-.. ..++++||.
T Consensus 55 --~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~Pvis 112 (319)
T PF02601_consen 55 --GAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVIS 112 (319)
T ss_pred --chHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEE
Confidence 13566777888887765 9999999999998876665444221 255677763
No 123
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=53.71 E-value=27 Score=36.58 Aligned_cols=52 Identities=29% Similarity=0.421 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCc
Q 042388 170 EQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTID 223 (567)
Q Consensus 170 e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTID 223 (567)
.+++.+++.|-+ .+|.++||||-.| .|..+|+|-.++.+.++-.|-=|.=|+
T Consensus 197 ~~RQ~a~~~La~-~vD~miVIGg~~S-sNT~kL~eia~~~~~~t~~Ie~~~el~ 248 (281)
T PF02401_consen 197 QNRQEAARELAK-EVDAMIVIGGKNS-SNTRKLAEIAKEHGKPTYHIETADELD 248 (281)
T ss_dssp HHHHHHHHHHHC-CSSEEEEES-TT--HHHHHHHHHHHHCTTCEEEESSGGG--
T ss_pred HHHHHHHHHHHh-hCCEEEEecCCCC-ccHHHHHHHHHHhCCCEEEeCCccccC
Confidence 456666666644 7999999999999 677889999888876655554454443
No 124
>PRK07360 FO synthase subunit 2; Reviewed
Probab=53.28 E-value=2.1e+02 Score=30.89 Aligned_cols=188 Identities=14% Similarity=0.161 Sum_probs=93.2
Q ss_pred CCcEEEEEecCCCCchhh--HHHHHHHHHHHHhcCCCEEEEEeC-------CcccccCCCEEEcCccccccccccCCccc
Q 042388 88 KSLKIGVVLSGGQAPGGH--NVISGIFDYLQERTNGSKLYGFKG-------GPAGIMKCKYVELSTEYIYPYRNQGGFDM 158 (567)
Q Consensus 88 ~~~~IgIv~sGG~aPG~n--nvI~gl~~~l~~~~~~~~v~Gf~~-------G~~GLl~~~~~eLt~~~v~~~~n~GG~~~ 158 (567)
...+|.++ ||.-|-.. .-+..+++.+++..++..+.++-. -..|+. +.+.+..++.-|=..+
T Consensus 107 G~~~i~l~--~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~-------~~e~l~~LkeAGld~~ 177 (371)
T PRK07360 107 GATEVCIQ--GGLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLS-------YEEVLKALKDAGLDSM 177 (371)
T ss_pred CCCEEEEc--cCCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCC-------HHHHHHHHHHcCCCcC
Confidence 45677777 45555443 456778888877666666665410 012332 2333444444332222
Q ss_pred ccccCC------------CCCChHHHHHHHHHHHHcCC--CEEEEecCchhHHHHHHHHHHHhcCCCCc-c-EEEecccC
Q 042388 159 ICSGRD------------KIETPEQFKQAEETAKKLDL--DGLVVIGGDDSNTNACLLAENFRSKDMKT-R-VIGCPKTI 222 (567)
Q Consensus 159 LGS~R~------------k~~~~e~~~~~~~~l~~~~i--d~LViIGGddS~t~A~~Lae~~~~~g~~i-~-VIgVPKTI 222 (567)
.+++.. ...+.+++-++++.++++++ ..=+++|=..|..........+++.+.+. . ...||-.+
T Consensus 178 ~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~gEt~edrv~~l~~lr~l~~~~~g~~~fIp~~f 257 (371)
T PRK07360 178 PGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMYGHVETPEHRIDHLLILREIQQETGGITEFVPLPF 257 (371)
T ss_pred CCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEeeCCCCHHHHHHHHHHHHHhchhhCCeeEEEeccc
Confidence 233321 12255778899999999998 45555554456655554445554433221 0 12245333
Q ss_pred cCCCCCCCCCC-------CCChHhHHHHHHHHHHHHHHHHhh--cCCeeEEEEecCCCCcHHHHHhhhhcCCcEE---EE
Q 042388 223 DGDLKCKEVPT-------SFGFDTACKIFSEMIGNVMTDARS--TGKYYHFVRLMGRAASHITLECALQTHPNIT---II 290 (567)
Q Consensus 223 DNDL~~~~ie~-------S~GFdTA~k~~ae~I~ni~~da~S--~~k~~~fVevMGR~ag~LAL~~aLat~pniv---lI 290 (567)
-+ ++|..+. +.+.+. ++++|-+ .|..+-.. -.-+|. ++|- .....+|..|+|.+ ++
T Consensus 258 ~~--~~Tpl~~~~~~~~~~~~~~~-lr~iAi~--Rl~lp~~~~~i~a~~~---~lg~----~~~~~~l~~Gan~~~~~~~ 325 (371)
T PRK07360 258 VH--ENAPLYERGRVKGGAPGLED-LLLYAVS--RIFLGNWIKNIQASWV---KLGL----KLAQVALNCGANDLGGTLM 325 (371)
T ss_pred cC--CCCccccccccCCCCCHHHH-HHHHHHH--HHhcCCCCCCeeccce---eeCH----HHHHHHHhcCCccCcCcCc
Confidence 33 2333321 123333 5555432 33322210 011221 2221 22356788899999 99
Q ss_pred CCcchh
Q 042388 291 GEEVAA 296 (567)
Q Consensus 291 pEe~~~ 296 (567)
||.+..
T Consensus 326 ~~~v~~ 331 (371)
T PRK07360 326 EEHITK 331 (371)
T ss_pred ccceec
Confidence 988765
No 125
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=53.03 E-value=17 Score=37.52 Aligned_cols=44 Identities=25% Similarity=0.427 Sum_probs=30.3
Q ss_pred HHHcCCCEEEEecCchhHHHHHH-HHHHHhcCCCCccEEE-ecccCcCCCC
Q 042388 179 AKKLDLDGLVVIGGDDSNTNACL-LAENFRSKDMKTRVIG-CPKTIDGDLK 227 (567)
Q Consensus 179 l~~~~id~LViIGGddS~t~A~~-Lae~~~~~g~~i~VIg-VPKTIDNDL~ 227 (567)
+...+.|.+|++|||||...+.. |.+ .. +.+.+| +|.==-||+.
T Consensus 53 ~~~~~~d~ivv~GGDGTl~~v~~~l~~----~~-~~~~lgiiP~Gt~N~~a 98 (293)
T TIGR00147 53 ARKFGVDTVIAGGGDGTINEVVNALIQ----LD-DIPALGILPLGTANDFA 98 (293)
T ss_pred HHhcCCCEEEEECCCChHHHHHHHHhc----CC-CCCcEEEEcCcCHHHHH
Confidence 34567899999999999887653 432 11 234566 8977677776
No 126
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=52.81 E-value=31 Score=37.54 Aligned_cols=50 Identities=20% Similarity=0.349 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHcCCC---EEEEecCchhHHHHHHHHHHHhcCCCCccEEEeccc
Q 042388 169 PEQFKQAEETAKKLDLD---GLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT 221 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~id---~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT 221 (567)
.+...++.+.+.+.+.| .+|.+||--..+.|-.+|-. ..+| ++.|.||-|
T Consensus 82 ~~~v~~i~~~l~~~~~~r~~~IIalGGG~v~D~ag~vA~~-~~rG--ip~I~IPTT 134 (369)
T cd08198 82 PDLVEALHAAINRHGIDRHSYVIAIGGGAVLDAVGYAAAT-AHRG--VRLIRIPTT 134 (369)
T ss_pred HHHHHHHHHHHHHcCCCcCcEEEEECChHHHHHHHHHHHH-hcCC--CCEEEECCC
Confidence 36688999999999998 99999998888887777654 2334 789999998
No 127
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=51.76 E-value=76 Score=33.98 Aligned_cols=48 Identities=25% Similarity=0.326 Sum_probs=35.6
Q ss_pred ChHHHHHHHHHHHHc--CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEE
Q 042388 168 TPEQFKQAEETAKKL--DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIG 217 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~--~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIg 217 (567)
+++++.++.+.++++ +.||+||.=|-|||.-.+.+-.++.+. ..+||-
T Consensus 60 tp~~w~~la~~I~~~~~~~dG~VVtHGTDTme~TA~~Ls~~l~~--~kPVVl 109 (336)
T TIGR00519 60 KPEYWVEIAEAVKKEYDDYDGFVITHGTDTMAYTAAALSFMLET--PKPVVF 109 (336)
T ss_pred CHHHHHHHHHHHHHHHhcCCeEEEccCCchHHHHHHHHHHHcCC--CCCEEE
Confidence 678888877777654 799999999999998877665655544 345554
No 128
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=51.57 E-value=3.2e+02 Score=28.89 Aligned_cols=107 Identities=12% Similarity=-0.007 Sum_probs=62.9
Q ss_pred CCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCC
Q 042388 88 KSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIE 167 (567)
Q Consensus 88 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~ 167 (567)
...+|+++......|=...+..|+-++++.. |.++. +. +.. ..
T Consensus 22 ~~~~i~~v~k~~~~pf~~~~~~Gi~~aa~~~--G~~v~-~~-------------------------~~~--------~~- 64 (336)
T PRK15408 22 AAERIAFIPKLVGVGFFTSGGNGAKEAGKEL--GVDVT-YD-------------------------GPT--------EP- 64 (336)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHHHHHHh--CCEEE-EE-------------------------CCC--------CC-
Confidence 3458999999999999999999998886532 22221 00 000 01
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
+.+...+.++.+...++|++++..-|... -...|.+ +.+.| |+||. +|.|...+.....+|.++
T Consensus 65 d~~~q~~~i~~li~~~vdgIiv~~~d~~a-l~~~l~~-a~~~g--IpVV~----~d~~~~~~~~~~~V~~~~ 128 (336)
T PRK15408 65 SVSGQVQLINNFVNQGYNAIIVSAVSPDG-LCPALKR-AMQRG--VKVLT----WDSDTKPECRSYYINQGT 128 (336)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCHHH-HHHHHHH-HHHCC--CeEEE----eCCCCCCccceEEEecCC
Confidence 22333467888999999999998655332 2223322 33344 56775 566654333223455443
No 129
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=51.27 E-value=60 Score=31.79 Aligned_cols=69 Identities=22% Similarity=0.268 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChH--hHHHHHHH
Q 042388 169 PEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFD--TACKIFSE 246 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFd--TA~k~~ae 246 (567)
++...++++.+...++|++|+++.+.+.. ..+.+.+. +++||.+ |++.....+ .++++| .+.+..++
T Consensus 41 ~~~~~~~i~~l~~~~vdgiii~~~~~~~~----~~~~l~~~--~ipvV~~----~~~~~~~~~-~~v~~d~~~~~~~~~~ 109 (268)
T cd06298 41 KEKELKVLNNLLAKQVDGIIFMGGKISEE----HREEFKRS--PTPVVLA----GSVDEDNEL-PSVNIDYKKAAFEATE 109 (268)
T ss_pred HHHHHHHHHHHHHhcCCEEEEeCCCCcHH----HHHHHhcC--CCCEEEE----ccccCCCCC-CEEEECcHHHHHHHHH
Confidence 34445666777789999999998654322 22333333 4567766 333332222 245554 55555544
Q ss_pred HH
Q 042388 247 MI 248 (567)
Q Consensus 247 ~I 248 (567)
.+
T Consensus 110 ~l 111 (268)
T cd06298 110 LL 111 (268)
T ss_pred HH
Confidence 43
No 130
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=50.52 E-value=2.4e+02 Score=27.43 Aligned_cols=99 Identities=23% Similarity=0.322 Sum_probs=59.6
Q ss_pred EEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChHH
Q 042388 92 IGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPEQ 171 (567)
Q Consensus 92 IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e~ 171 (567)
||||...-+.|-...++.|+.++++.. +..+.=+ .. + .+++.
T Consensus 2 igvi~~~~~~~~~~~~~~~i~~~a~~~--g~~~~~~------------------------~~-~-----------~~~~~ 43 (267)
T cd06283 2 IGVIVADITNPFSSLVLKGIEDVCRAH--GYQVLVC------------------------NS-D-----------NDPEK 43 (267)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHc--CCEEEEE------------------------cC-C-----------CCHHH
Confidence 788887778888999999999887542 2222100 00 1 02334
Q ss_pred HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 172 FKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 172 ~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
....++.+...++|++++.+.+.... .+ +.+.+.+ ++||.+ |.++....+ .++|+|-
T Consensus 44 ~~~~~~~l~~~~~dgiii~~~~~~~~---~l-~~~~~~~--ipvV~~----~~~~~~~~~-~~v~~d~ 100 (267)
T cd06283 44 EKEYLESLLAYQVDGLIVNPTGNNKE---LY-QRLAKNG--KPVVLV----DRKIPELGV-DTVTLDN 100 (267)
T ss_pred HHHHHHHHHHcCcCEEEEeCCCCChH---HH-HHHhcCC--CCEEEE----cCCCCCCCC-CEEEecc
Confidence 45677778889999999998764322 23 3333334 567765 455443222 4677654
No 131
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=49.84 E-value=38 Score=37.41 Aligned_cols=47 Identities=9% Similarity=0.084 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHH-HHHHHHHHhcCCCCccEEE
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDDSNTN-ACLLAENFRSKDMKTRVIG 217 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGddS~t~-A~~Lae~~~~~g~~i~VIg 217 (567)
.-+.+++.|++-++|++|..-.-|+-+. ++..++++++.|+++-.|+
T Consensus 324 ~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPvV~i~ 371 (431)
T TIGR01917 324 FAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHIC 371 (431)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEe
Confidence 3567999999999999999988887554 5667888888886644444
No 132
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.51 E-value=20 Score=37.87 Aligned_cols=54 Identities=17% Similarity=0.195 Sum_probs=37.2
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHH---HHHHHHHH
Q 042388 183 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIF---SEMIGNVM 252 (567)
Q Consensus 183 ~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~---ae~I~ni~ 252 (567)
+.|.+|++|||||+-.|+.... +.+++|+||.. . -++||-|...-. -++++++.
T Consensus 57 ~~d~vi~~GGDGT~l~~~~~~~-----~~~~pv~gin~------~-----G~lGFL~~~~~~~~~~~~l~~i~ 113 (305)
T PRK02645 57 LIDLAIVLGGDGTVLAAARHLA-----PHDIPILSVNV------G-----GHLGFLTHPRDLLQDESVWDRLQ 113 (305)
T ss_pred CcCEEEEECCcHHHHHHHHHhc-----cCCCCEEEEec------C-----CcceEecCchhhcchHHHHHHHH
Confidence 5899999999999887765532 34678999875 1 278998865321 34555554
No 133
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=49.33 E-value=44 Score=40.31 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=32.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHH
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLA 203 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~La 203 (567)
+.+..+++++.+++.+.|.+|-|||--+++.|..++
T Consensus 524 ~~~~v~~~~~~~~~~~~D~IIaiGGGSviD~AK~ia 559 (862)
T PRK13805 524 TLSTVRKGAELMRSFKPDTIIALGGGSPMDAAKIMW 559 (862)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHH
Confidence 457899999999999999999999999998887775
No 134
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=49.06 E-value=78 Score=31.90 Aligned_cols=102 Identities=21% Similarity=0.175 Sum_probs=58.7
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChH
Q 042388 91 KIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPE 170 (567)
Q Consensus 91 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e 170 (567)
.||||+..-..|-...++.|+-+.++. .|..+. + .+.. .+++
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~a~~--~g~~~~----------------~--------~~~~------------~~~~ 42 (288)
T cd01538 1 KIGLSLPTKTEERWIRDRPNFEAALKE--LGAEVI----------------V--------QNAN------------GDPA 42 (288)
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHHHHH--cCCEEE----------------E--------ECCC------------CCHH
Confidence 478888777778888888888877653 223322 0 0011 1234
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChH
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFD 238 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFd 238 (567)
...+.++.+...++|++|+.+.+.+... ..| +.+.+.+ ++||.+ |.+........++++|
T Consensus 43 ~~~~~i~~~~~~~vdgiii~~~~~~~~~-~~l-~~l~~~~--ipvV~~----~~~~~~~~~~~~v~~d 102 (288)
T cd01538 43 KQISQIENMIAKGVDVLVIAPVDGEALA-SAV-EKAADAG--IPVIAY----DRLILNSNVDYYVSFD 102 (288)
T ss_pred HHHHHHHHHHHcCCCEEEEecCChhhHH-HHH-HHHHHCC--CCEEEE----CCCCCCCCcceEEEeC
Confidence 4567777788899999999886654211 223 3344444 577765 4444332222345554
No 135
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=48.97 E-value=1.5e+02 Score=29.14 Aligned_cols=90 Identities=21% Similarity=0.290 Sum_probs=56.7
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChH
Q 042388 91 KIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPE 170 (567)
Q Consensus 91 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e 170 (567)
.||||+..=+.|-...++.|+.+.++.. +..++-. .+. .+++
T Consensus 1 ~Igvv~~~~~~~~~~~~~~~i~~~a~~~--g~~~~~~---------------------------------~~~---~~~~ 42 (269)
T cd06281 1 TIGCLVSDITNPLLAQLFSGAEDRLRAA--GYSLLIA---------------------------------NSL---NDPE 42 (269)
T ss_pred CEEEEecCCccccHHHHHHHHHHHHHHc--CCEEEEE---------------------------------eCC---CChH
Confidence 4899998878899999999998887642 2332210 000 1234
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCc
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTID 223 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTID 223 (567)
...++++.+...++||+++.+++... ..+.+.+++.+ ++||.+=...+
T Consensus 43 ~~~~~i~~l~~~~vdgii~~~~~~~~---~~~~~~~~~~~--ipvV~i~~~~~ 90 (269)
T cd06281 43 RELEILRSFEQRRMDGIIIAPGDERD---PELVDALASLD--LPIVLLDRDMG 90 (269)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCc---HHHHHHHHhCC--CCEEEEecccC
Confidence 45677788899999999999876432 12234444444 56776644333
No 136
>PRK13055 putative lipid kinase; Reviewed
Probab=48.61 E-value=32 Score=36.53 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCCEEEEecCchhHHHHH-HHHHHHhcCCCCccEEEecccCcCCCC
Q 042388 173 KQAEETAKKLDLDGLVVIGGDDSNTNAC-LLAENFRSKDMKTRVIGCPKTIDGDLK 227 (567)
Q Consensus 173 ~~~~~~l~~~~id~LViIGGddS~t~A~-~Lae~~~~~g~~i~VIgVPKTIDNDL~ 227 (567)
++.++.+...+.|.||++|||||+..+. -|.+ .+..+++--+|.==-||+.
T Consensus 49 ~~~~~~~~~~~~d~vvv~GGDGTl~evvngl~~----~~~~~~LgiiP~GTgNdfA 100 (334)
T PRK13055 49 KNEAKRAAEAGFDLIIAAGGDGTINEVVNGIAP----LEKRPKMAIIPAGTTNDYA 100 (334)
T ss_pred HHHHHHHhhcCCCEEEEECCCCHHHHHHHHHhh----cCCCCcEEEECCCchhHHH
Confidence 3444444567789999999999977654 3332 2334556668987788876
No 137
>PRK10586 putative oxidoreductase; Provisional
Probab=48.34 E-value=36 Score=36.73 Aligned_cols=57 Identities=14% Similarity=0.116 Sum_probs=43.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCC
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKE 230 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ 230 (567)
+.++.+++.+.++ .+.|.+|-|||--+++.|..++.. .++++|.||-|-.+|-..+.
T Consensus 72 ~~~~v~~l~~~~~-~~~d~iiavGGGs~iD~aK~~a~~-----~~~p~i~vPT~a~t~s~~s~ 128 (362)
T PRK10586 72 SESDVAQLAAASG-DDRQVVIGVGGGALLDTAKALARR-----LGLPFVAIPTIAATCAAWTP 128 (362)
T ss_pred CHHHHHHHHHHhc-cCCCEEEEecCcHHHHHHHHHHhh-----cCCCEEEEeCCccccccccC
Confidence 3566667766664 588999999999999999888853 25789999988877765443
No 138
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.32 E-value=20 Score=37.31 Aligned_cols=50 Identities=24% Similarity=0.367 Sum_probs=34.0
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHH--HHHHHHHHHH
Q 042388 183 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACK--IFSEMIGNVM 252 (567)
Q Consensus 183 ~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k--~~ae~I~ni~ 252 (567)
+.|.+|++|||||+-.|+... ..+|+||-- -++||-|... -+-+.+..+.
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~--------~~PilGIN~------------G~lGFL~~~~~~~~~~~l~~i~ 103 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRA--------KGPILGINM------------GGLGFLTEIEIDEVGSAIKKLI 103 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHc--------CCCEEEEEC------------CCCccCcccCHHHHHHHHHHHH
Confidence 689999999999987765432 248999853 2789988643 2334444444
No 139
>PRK13057 putative lipid kinase; Reviewed
Probab=48.18 E-value=47 Score=34.23 Aligned_cols=59 Identities=20% Similarity=0.245 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChH
Q 042388 169 PEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFD 238 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFd 238 (567)
+.+....++. ...+.|.+|++|||||...+.. .+.. .++++-.+|.===||+. .++|..
T Consensus 37 ~~~a~~~~~~-~~~~~d~iiv~GGDGTv~~v~~---~l~~--~~~~lgiiP~GT~Ndfa-----r~Lg~~ 95 (287)
T PRK13057 37 PDDLSEVIEA-YADGVDLVIVGGGDGTLNAAAP---ALVE--TGLPLGILPLGTANDLA-----RTLGIP 95 (287)
T ss_pred HHHHHHHHHH-HHcCCCEEEEECchHHHHHHHH---HHhc--CCCcEEEECCCCccHHH-----HHcCCC
Confidence 3344444444 3467899999999999877642 2222 24678889987788887 366654
No 140
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=47.55 E-value=38 Score=32.46 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=33.9
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccC
Q 042388 167 ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 222 (567)
Q Consensus 167 ~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 222 (567)
++++.+.+.+++.++.+++.+|.+.|- +..-+-.++- ....+|||||-..
T Consensus 37 Rtp~~~~~~~~~a~~~g~~viIa~AG~-aa~Lpgvva~-----~t~~PVIgvP~~~ 86 (156)
T TIGR01162 37 RTPELMLEYAKEAEERGIKVIIAGAGG-AAHLPGMVAA-----LTPLPVIGVPVPS 86 (156)
T ss_pred cCHHHHHHHHHHHHHCCCeEEEEeCCc-cchhHHHHHh-----ccCCCEEEecCCc
Confidence 467889999999999999776666554 2222222332 3468999999743
No 141
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=47.25 E-value=93 Score=30.42 Aligned_cols=100 Identities=19% Similarity=0.228 Sum_probs=60.1
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChH
Q 042388 91 KIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPE 170 (567)
Q Consensus 91 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e 170 (567)
.||||+..-+.|=.+.++.|+.++++.. +..+.-+. . . .+++
T Consensus 1 ~igvv~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~~------------------------~-~-----------~~~~ 42 (265)
T cd06299 1 TIGVIVPDIRNPYFASLATAIQDAASAA--GYSTIIGN------------------------S-D-----------ENPE 42 (265)
T ss_pred CEEEEecCCCCccHHHHHHHHHHHHHHc--CCEEEEEe------------------------C-C-----------CCHH
Confidence 4888888777888888888988876532 22222100 0 0 1234
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
.....++.+...++||+|+.+.+.+.. .+ +.+.+++ ++||.+ |++.....+ .+++.|-
T Consensus 43 ~~~~~~~~l~~~~vdgiIi~~~~~~~~---~~-~~l~~~~--ipvV~~----~~~~~~~~~-~~v~~d~ 100 (265)
T cd06299 43 TENRYLDNLLSQRVDGIIVVPHEQSAE---QL-EDLLKRG--IPVVFV----DREITGSPI-PFVTSDP 100 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCChH---HH-HHHHhCC--CCEEEE----ecccCCCCC-CEEEECc
Confidence 456778889999999999998765432 23 4444445 467643 555443222 3555553
No 142
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=46.75 E-value=47 Score=34.35 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCCEEEEecCchhHHHHH-HHHHHHhcCCCCccEEEecccCcCCCC
Q 042388 173 KQAEETAKKLDLDGLVVIGGDDSNTNAC-LLAENFRSKDMKTRVIGCPKTIDGDLK 227 (567)
Q Consensus 173 ~~~~~~l~~~~id~LViIGGddS~t~A~-~Lae~~~~~g~~i~VIgVPKTIDNDL~ 227 (567)
++.++.+.+.+.|.+|++|||||...+. -|.+. ..+..+++.-+|.==-||+.
T Consensus 42 ~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~--~~~~~~~lgiiP~GTgNdfA 95 (293)
T TIGR03702 42 QRYVAEALALGVSTVIAGGGDGTLREVATALAQI--RDDAAPALGLLPLGTANDFA 95 (293)
T ss_pred HHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhh--CCCCCCcEEEEcCCchhHHH
Confidence 3444444567789999999999977755 33221 11234567789988889887
No 143
>PF04009 DUF356: Protein of unknown function (DUF356); InterPro: IPR007154 Members of this family are around 120 amino acids in length and are found in some archaebacteria. The function of this family is unknown. However it contains a conserved motif IHPPAH that may be involved in its function.
Probab=46.69 E-value=59 Score=29.23 Aligned_cols=62 Identities=18% Similarity=0.358 Sum_probs=43.4
Q ss_pred EEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHHHHH-HHHHHhhcCCeeEEE
Q 042388 187 LVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGN-VMTDARSTGKYYHFV 265 (567)
Q Consensus 187 LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~n-i~~da~S~~k~~~fV 265 (567)
|++|=||+....-..||+- .++| ++.+.|-|+-|+-++. -+...+.++. +...+.++ .++
T Consensus 1 ~~lIR~dn~~K~~~ALaDl-eRh~-~l~i~gkPrii~p~~A-------------D~i~~~ilg~~lr~~~k~A----~lv 61 (107)
T PF04009_consen 1 LILIRADNYDKILNALADL-ERHG-GLKIRGKPRIIPPEYA-------------DWILEKILGEPLRKKCKAA----ALV 61 (107)
T ss_pred CeEEecCCHHHHHHHHHHH-HHhc-CCeEecCCcccChHHH-------------HHHHHHHhCCccccccchh----eEE
Confidence 5778888888877778764 4455 6889999999988764 3455566666 66666554 355
Q ss_pred Ee
Q 042388 266 RL 267 (567)
Q Consensus 266 ev 267 (567)
++
T Consensus 62 ~v 63 (107)
T PF04009_consen 62 KV 63 (107)
T ss_pred Ee
Confidence 65
No 144
>PRK06186 hypothetical protein; Validated
Probab=46.64 E-value=21 Score=36.34 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=42.4
Q ss_pred CCCEEEEecCchh--HHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhhcC
Q 042388 183 DLDGLVVIGGDDS--NTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDARSTG 259 (567)
Q Consensus 183 ~id~LViIGGddS--~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~ni~~da~S~~ 259 (567)
++||++|.||.|. ..+.-..++|.++++ +++.| .|.|+..|+=.++.-+-.+ .||.|..
T Consensus 53 ~~dgilvpgGfg~rg~~Gki~ai~~Are~~--iP~LG---------------IClGmQ~avIe~arnv~g~-~dA~s~E 113 (229)
T PRK06186 53 GFDGIWCVPGSPYRNDDGALTAIRFARENG--IPFLG---------------TCGGFQHALLEYARNVLGW-ADAAHAE 113 (229)
T ss_pred hCCeeEeCCCCCcccHhHHHHHHHHHHHcC--CCeEe---------------echhhHHHHHHHHhhhcCC-cCCCcCC
Confidence 6799999999987 344555567877766 35666 3999999877666655444 5887753
No 145
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=46.11 E-value=29 Score=35.69 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=37.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCC
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLK 227 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 227 (567)
+.+...++.+.++..+.|.+|-+||--.++.|...|... +++.|.||-+..+|=.
T Consensus 60 ~~~~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~~-----~~p~isVPTa~S~DG~ 114 (250)
T PF13685_consen 60 DEDEVEKLVEALRPKDADLIIGVGGGTIIDIAKYAAFEL-----GIPFISVPTAASHDGF 114 (250)
T ss_dssp BHHHHHHHHTTS--TT--EEEEEESHHHHHHHHHHHHHH-----T--EEEEES--SSGGG
T ss_pred CHHHHHHHHHHhcccCCCEEEEeCCcHHHHHHHHHHHhc-----CCCEEEeccccccccc
Confidence 466778888888888999999999987777777666543 6789999999988854
No 146
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=45.40 E-value=32 Score=35.89 Aligned_cols=49 Identities=18% Similarity=0.342 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEecCC-CCcHHHHHhhhhcCCcEEEEC
Q 042388 242 KIFSEMIGNVMTDARSTGKYYHFVRLMGR-AASHITLECALQTHPNITIIG 291 (567)
Q Consensus 242 k~~ae~I~ni~~da~S~~k~~~fVevMGR-~ag~LAL~~aLat~pnivlIp 291 (567)
++++++-..+. +.+..++++.||=+||- +.||++|--.-...++.|+++
T Consensus 5 ~ti~~lr~~~~-~~r~~gk~Vg~VPTMG~LH~GHlsLVr~A~~~~d~VVVS 54 (285)
T COG0414 5 TTIAELRQAIK-ALRKEGKRVGLVPTMGNLHEGHLSLVRRAKKENDVVVVS 54 (285)
T ss_pred ehHHHHHHHHH-HHHHcCCEEEEEcCCcccchHHHHHHHHHhhcCCeEEEE
Confidence 34555555554 77788889999999997 899999988777888888763
No 147
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=44.39 E-value=1e+02 Score=30.07 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChH
Q 042388 170 EQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFD 238 (567)
Q Consensus 170 e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFd 238 (567)
+...+.++.+...++|++++.+.+.+... .+ +.+.+.| ++||.+ |+++....+ .++++|
T Consensus 42 ~~~~~~i~~~~~~~vdgiii~~~~~~~~~--~~-~~~~~~~--ipvV~~----~~~~~~~~~-~~v~~d 100 (268)
T cd06289 42 ERQEQLLSTMLEHGVAGIILCPAAGTSPD--LL-KRLAESG--IPVVLV----AREVAGAPF-DYVGPD 100 (268)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCccHH--HH-HHHHhcC--CCEEEE----eccCCCCCC-CEEeec
Confidence 44456778888899999999987654322 22 2333344 567765 333332222 355655
No 148
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=44.30 E-value=2.5e+02 Score=27.66 Aligned_cols=92 Identities=16% Similarity=0.077 Sum_probs=54.2
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChH
Q 042388 91 KIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPE 170 (567)
Q Consensus 91 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e 170 (567)
+||||+..-..|....++.|+-+.++.. |.++.-+. ..+ -.+++
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~~------------------------~~~----------~~~~~ 44 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKKL--GVSVDIQA------------------------APS----------EGDQQ 44 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHHh--CCeEEEEc------------------------cCC----------CCCHH
Confidence 5889998777888888888888876542 22211000 000 01233
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccC
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 222 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 222 (567)
....+++.+...++|++|+.+.+.+.... .+ +.+.+++ ++||.+-..+
T Consensus 45 ~~~~~i~~l~~~~vdgiIi~~~~~~~~~~-~~-~~~~~~~--iPvV~~~~~~ 92 (275)
T cd06320 45 GQLSIAENMINKGYKGLLFSPISDVNLVP-AV-ERAKKKG--IPVVNVNDKL 92 (275)
T ss_pred HHHHHHHHHHHhCCCEEEECCCChHHhHH-HH-HHHHHCC--CeEEEECCCC
Confidence 44567888888999999987765442222 22 4444444 5788664433
No 149
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=44.20 E-value=2.8e+02 Score=29.91 Aligned_cols=106 Identities=12% Similarity=0.083 Sum_probs=62.7
Q ss_pred EEEEecCchhHHHHHHHHHHHhcCCCCccEEEeccc------CcCCCCCCCCCCCCChHhHHHHHHHHHHHHH---HHHh
Q 042388 186 GLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT------IDGDLKCKEVPTSFGFDTACKIFSEMIGNVM---TDAR 256 (567)
Q Consensus 186 ~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT------IDNDL~~~~ie~S~GFdTA~k~~ae~I~ni~---~da~ 256 (567)
-+++-||.+..-..+.|++++++++.++.++|+-.. ++-....+.+ ...||....+.+..+...+. ....
T Consensus 8 i~i~aGgtsGhi~paal~~~l~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l-~v~G~~~~l~~~~~~~~~~~~~~~~l~ 86 (385)
T TIGR00215 8 IALVAGEASGDILGAGLRQQLKEHYPNARFIGVAGPRMAAEGCEVLYSMEEL-SVMGLREVLGRLGRLLKIRKEVVQLAK 86 (385)
T ss_pred EEEEeCCccHHHHHHHHHHHHHhcCCCcEEEEEccHHHHhCcCccccChHHh-hhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566776655545999999988888889987642 1111222333 46788766666665555443 2222
Q ss_pred hcCCeeEEEEecCCCCcHHHH--HhhhhcCCcEEEECCcc
Q 042388 257 STGKYYHFVRLMGRAASHITL--ECALQTHPNITIIGEEV 294 (567)
Q Consensus 257 S~~k~~~fVevMGR~ag~LAL--~~aLat~pnivlIpEe~ 294 (567)
..+ --+|=.+|-.+..+.+ .+....-|-+.+||-++
T Consensus 87 ~~k--Pd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~ 124 (385)
T TIGR00215 87 QAK--PDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQV 124 (385)
T ss_pred hcC--CCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcH
Confidence 222 4577788854436433 55555557777776443
No 150
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=44.04 E-value=2.8e+02 Score=27.71 Aligned_cols=67 Identities=25% Similarity=0.166 Sum_probs=46.9
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCCh
Q 042388 90 LKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETP 169 (567)
Q Consensus 90 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~ 169 (567)
++||++...-..|....++.|+.+.+++. +..+. - .+ +. .++
T Consensus 1 ~~ig~i~~~~~~~~~~~~~~gi~~~a~~~--gy~~~---------------~---------~~-~~-----------~~~ 42 (280)
T cd06315 1 KNIIFVASDLKNGGILGVGEGVREAAKAI--GWNLR---------------I---------LD-GR-----------GSE 42 (280)
T ss_pred CeEEEEecccCCcHHHHHHHHHHHHHHHc--CcEEE---------------E---------EC-CC-----------CCH
Confidence 47999998888899999999998886542 11111 0 00 11 133
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCch
Q 042388 170 EQFKQAEETAKKLDLDGLVVIGGDD 194 (567)
Q Consensus 170 e~~~~~~~~l~~~~id~LViIGGdd 194 (567)
++..++++.+...++|++|+.+.+-
T Consensus 43 ~~~~~~i~~l~~~~vdgiil~~~~~ 67 (280)
T cd06315 43 AGQAAALNQAIALKPDGIVLGGVDA 67 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCH
Confidence 4456788889999999999998653
No 151
>PRK05670 anthranilate synthase component II; Provisional
Probab=43.62 E-value=32 Score=33.21 Aligned_cols=51 Identities=22% Similarity=0.340 Sum_probs=33.7
Q ss_pred HHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHH
Q 042388 180 KKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFS 245 (567)
Q Consensus 180 ~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~a 245 (567)
++++.|+||+-||.++-..+....+.+++-..+++|.|| |+|+...+....
T Consensus 40 ~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGI---------------ClG~Qlla~alG 90 (189)
T PRK05670 40 EALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGV---------------CLGHQAIGEAFG 90 (189)
T ss_pred HhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEE---------------CHHHHHHHHHhC
Confidence 556799999999998876544333333221224667774 999988777653
No 152
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=43.45 E-value=50 Score=34.84 Aligned_cols=52 Identities=17% Similarity=0.144 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHc-CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCC
Q 042388 171 QFKQAEETAKKL-DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLK 227 (567)
Q Consensus 171 ~~~~~~~~l~~~-~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 227 (567)
.++++.+.+++. +.|.+|-|||--.++.|..+|.. + ++++|.||-|.-+|-.
T Consensus 62 ~~~~i~~~~~~~~~~d~iIaiGGGsv~D~aK~vA~~---~--~~p~i~vPTt~~tgs~ 114 (331)
T cd08174 62 DAEEIGARARSIPNVDAVVGIGGGKVIDVAKYAAFL---R--GIPLSVPTTNLNDDGI 114 (331)
T ss_pred CHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhh---c--CCCEEEecCccccCcc
Confidence 345555556555 59999999999888888888762 2 4789999998876543
No 153
>PRK13059 putative lipid kinase; Reviewed
Probab=43.15 E-value=44 Score=34.68 Aligned_cols=51 Identities=16% Similarity=0.271 Sum_probs=36.3
Q ss_pred HcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 181 KLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 181 ~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
+.+.|.+|++|||||...+. ..+.+.+.++++--+|.==-||+. .++|...
T Consensus 54 ~~~~d~vi~~GGDGTv~evv---~gl~~~~~~~~lgviP~GTgNdfA-----r~lgi~~ 104 (295)
T PRK13059 54 DESYKYILIAGGDGTVDNVV---NAMKKLNIDLPIGILPVGTANDFA-----KFLGMPT 104 (295)
T ss_pred hcCCCEEEEECCccHHHHHH---HHHHhcCCCCcEEEECCCCHhHHH-----HHhCCCC
Confidence 46789999999999977654 233334556778889987788876 3556543
No 154
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=43.14 E-value=3.8e+02 Score=27.34 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 169 PEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
.+...++++.+...++|++++.+-+... ....+ +.+.+.+ ++||.+
T Consensus 40 ~~~q~~~i~~l~~~~vDgIIi~~~~~~~-~~~~l-~~~~~~~--iPvV~~ 85 (302)
T TIGR02634 40 EAKQISQIENLIARGVDVLVIIPQNGQV-LSNAV-QEAKDEG--IKVVAY 85 (302)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCChhH-HHHHH-HHHHHCC--CeEEEe
Confidence 4445678899999999999998765321 12223 3344444 577765
No 155
>PRK11096 ansB L-asparaginase II; Provisional
Probab=42.66 E-value=65 Score=34.77 Aligned_cols=48 Identities=15% Similarity=0.172 Sum_probs=35.2
Q ss_pred ChHHHHHHHHHHHH--cCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEE
Q 042388 168 TPEQFKQAEETAKK--LDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIG 217 (567)
Q Consensus 168 ~~e~~~~~~~~l~~--~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIg 217 (567)
+++++.++.+.+++ .+.|++||.-|-|||...+.+-..+... +.+||-
T Consensus 83 t~~~~~~l~~~i~~~~~~~dGiVVtHGTDTme~tA~~Ls~~~~~--~kPVVl 132 (347)
T PRK11096 83 NDEVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLDLTVKC--DKPVVL 132 (347)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCchHHHHHHHHHHhccC--CCCEEE
Confidence 67788888888877 5799999999999998877655554333 334543
No 156
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=42.09 E-value=1.6e+02 Score=31.73 Aligned_cols=111 Identities=16% Similarity=0.166 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeC-----Cccccc------CCC-E--EEcCcc-ccccc--cccCCccccc-ccCCCCC
Q 042388 106 NVISGIFDYLQERTNGSKLYGFKG-----GPAGIM------KCK-Y--VELSTE-YIYPY--RNQGGFDMIC-SGRDKIE 167 (567)
Q Consensus 106 nvI~gl~~~l~~~~~~~~v~Gf~~-----G~~GLl------~~~-~--~eLt~~-~v~~~--~n~GG~~~LG-S~R~k~~ 167 (567)
+++..+.+.++.......||++.- |.+|-. +.+ . +|.+.. +.... ...|+-.+|. .-+.-+.
T Consensus 184 a~l~e~l~~l~~~~~~~~l~~~~tvqEEvG~rGA~~aa~~i~pD~aI~vDv~~~~d~~~~~~~~lg~Gp~i~~~D~~~i~ 263 (350)
T TIGR03107 184 LMILELLESLKDQELPNTLIAGANVQEEVGLRGAHVSTTKFNPDIFFAVDCSPAGDIYGDQGGKLGEGTLLRFFDPGHIM 263 (350)
T ss_pred HHHHHHHHHhhhcCCCceEEEEEEChhhcCchhhhhHHhhCCCCEEEEEecCCcCCCCCCCccccCCCceEEEecCCCCC
Confidence 344555555544445668887652 556632 333 2 233321 11111 2234334662 2245566
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecc
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPK 220 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPK 220 (567)
++.-.+.+.+.+++++|..=+++-|-||-.++..++ ..|+++-+|+||-
T Consensus 264 ~~~l~~~l~~~A~~~~I~~Q~~~~~gGtDa~~~~~~----~~Gvpt~~i~ip~ 312 (350)
T TIGR03107 264 LPRMKDFLLTTAEEAGIKYQYYVAKGGTDAGAAHLK----NSGVPSTTIGVCA 312 (350)
T ss_pred CHHHHHHHHHHHHHcCCCcEEecCCCCchHHHHHHh----CCCCcEEEEccCc
Confidence 788899999999999999877664435544554443 4699999999995
No 157
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=41.95 E-value=74 Score=31.36 Aligned_cols=102 Identities=20% Similarity=0.322 Sum_probs=64.6
Q ss_pred EEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCC---------CEEEcCccccccccccCCcccccccCC
Q 042388 94 VVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKC---------KYVELSTEYIYPYRNQGGFDMICSGRD 164 (567)
Q Consensus 94 Iv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~---------~~~eLt~~~v~~~~n~GG~~~LGS~R~ 164 (567)
+|++||+.|-.... +. .......++++=+|..=|++. ++=-++++..+.+... |..++-....
T Consensus 2 ~Ii~~g~~~~~~~~-----~~--~~~~~~~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~-~~~~~~~p~~ 73 (208)
T cd07995 2 LILLGGPLPDSPLL-----LK--LWKKADLIIAADGGANHLLDLGIVPDLIIGDFDSISPEVLEYYKSK-GVEIIHFPDE 73 (208)
T ss_pred EEEECCcCCcchhH-----HH--hhccCCEEEEEChHHHHHHHcCCCCCEEEecCcCCCHHHHHHHHhc-CCeEEECCCC
Confidence 67888888854443 11 223456788888887655553 3334444555555544 4323322222
Q ss_pred CCCChHHHHHHHHHHHHcCCCEEEEecCchh-----HHHHHHHHHH
Q 042388 165 KIETPEQFKQAEETAKKLDLDGLVVIGGDDS-----NTNACLLAEN 205 (567)
Q Consensus 165 k~~~~e~~~~~~~~l~~~~id~LViIGGddS-----~t~A~~Lae~ 205 (567)
++..++++|++.+.+++-+-++++|+-|. +.+...|..+
T Consensus 74 --KD~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~l~~~ 117 (208)
T cd07995 74 --KDFTDFEKALKLALERGADEIVILGATGGRLDHTLANLNLLLKY 117 (208)
T ss_pred --CCCCHHHHHHHHHHHcCCCEEEEEccCCCcHHHHHHHHHHHHHH
Confidence 34567999999999999999999999764 5555666555
No 158
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=41.74 E-value=1.5e+02 Score=31.50 Aligned_cols=113 Identities=14% Similarity=0.175 Sum_probs=66.1
Q ss_pred EEEecCCCCchhhH--HHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccC-CC-CCC
Q 042388 93 GVVLSGGQAPGGHN--VISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGR-DK-IET 168 (567)
Q Consensus 93 gIv~sGG~aPG~nn--vI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R-~k-~~~ 168 (567)
-|++|||+ |=+.. .+..+++.+++. + .+.+++-|.+.... .-..+|++.++.+++.|= .++..+- .. -+.
T Consensus 162 eV~lsGGD-PLl~~d~~L~~ll~~L~~i-~--~~~~IRi~tr~~~~-~P~rit~el~~~L~~~~~-~~~~vsh~nh~~Ei 235 (331)
T TIGR00238 162 EILISGGD-PLMAKDHELEWLLKRLEEI-P--HLVRLRIGTRLPVV-IPQRITDELCELLASFEL-QLMLVTHINHCNEI 235 (331)
T ss_pred EEEEECCc-cccCCHHHHHHHHHHHHhc-C--CccEEEeecCCCcc-CchhcCHHHHHHHHhcCC-cEEEEccCCChHhC
Confidence 68999998 55443 477777777643 2 23344433332211 113356676666666542 2322221 11 122
Q ss_pred hHHHHHHHHHHHHcCC----CEEEEecCchhHHHHHHHHHHHhcCCC
Q 042388 169 PEQFKQAEETAKKLDL----DGLVVIGGDDSNTNACLLAENFRSKDM 211 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~i----d~LViIGGddS~t~A~~Lae~~~~~g~ 211 (567)
.+...++++.|++.++ ...+.-|=+|+......|.+.+.+.|+
T Consensus 236 ~~~~~~ai~~L~~aGi~v~~qtvLl~gvnD~~~~l~~L~~~l~~~gV 282 (331)
T TIGR00238 236 TEEFAEAMKKLRTVNVTLLNQSVLLRGVNDRAQILAKLSIALFKVGI 282 (331)
T ss_pred CHHHHHHHHHHHHcCCEEEeecceECCcCCCHHHHHHHHHHHhhcCe
Confidence 3567778888888775 455667778888888888888776664
No 159
>PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C ....
Probab=41.66 E-value=56 Score=33.80 Aligned_cols=69 Identities=22% Similarity=0.295 Sum_probs=47.8
Q ss_pred CChHHHHHHHHHHHHcCCC---EEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHH
Q 042388 167 ETPEQFKQAEETAKKLDLD---GLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKI 243 (567)
Q Consensus 167 ~~~e~~~~~~~~l~~~~id---~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~ 243 (567)
++-+.++++.+.+.+++++ .||.+||--..+-|-..|-.+. + .++.|.||-|+-. .+|.|+|--||+++
T Consensus 10 Ksl~~~~~i~~~l~~~~~~R~~~iiaiGGGvv~Dl~GFaAs~y~-R--Gi~~i~vPTTLLa-----~vDssiGgK~~vN~ 81 (260)
T PF01761_consen 10 KSLETVEKIYDALLEAGLDRDDLIIAIGGGVVGDLAGFAASTYM-R--GIPFIQVPTTLLA-----QVDSSIGGKTGVNF 81 (260)
T ss_dssp SSHHHHHHHHHHHHHTT--TTEEEEEEESHHHHHHHHHHHHHBT-T----EEEEEE-SHHH-----HHTTTSSSEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHHc-c--CCceEeccccHHH-----HHhcccCCCeeeeC
Confidence 4567889999999999995 9999999888777777776554 3 4789999998743 23346666665543
No 160
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=40.96 E-value=5.5e+02 Score=28.63 Aligned_cols=140 Identities=17% Similarity=0.276 Sum_probs=94.9
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCCh
Q 042388 90 LKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETP 169 (567)
Q Consensus 90 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~ 169 (567)
..+||.-. ||-=-+||.+.++..+. .+.-| .++-|.+.|+.+ ||. |+ .|+
T Consensus 15 ~~~gI~sV---Csahp~VieAAl~~a~~--~~~pv--------------LiEAT~NQVnq~---GGY----TG----mtP 64 (426)
T PRK15458 15 KTNGIYAV---CSAHPLVLEAAIRYALA--NDSPL--------------LIEATSNQVDQF---GGY----TG----MTP 64 (426)
T ss_pred CCceEEEe---cCCCHHHHHHHHHHHhh--cCCcE--------------EEEecccccccc---CCc----CC----CCH
Confidence 45577764 44445899998877543 33332 478899999988 774 22 256
Q ss_pred HHHHH-HHHHHHHcCCCE-EEEecCc-------------hhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCC
Q 042388 170 EQFKQ-AEETAKKLDLDG-LVVIGGD-------------DSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTS 234 (567)
Q Consensus 170 e~~~~-~~~~l~~~~id~-LViIGGd-------------dS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S 234 (567)
.+|.. +.+..++.+++. .+|+||| ..|..|..|.+.+.+.|+. -|++=.|++ ..++. ..
T Consensus 65 ~dF~~~V~~iA~~~gf~~~~iiLGGDHLGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~--cagdp--~p 138 (426)
T PRK15458 65 ADFRGFVCQLADSLNFPQEALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVAAGFK--KIHLDCSMS--CADDP--IP 138 (426)
T ss_pred HHHHHHHHHHHHHcCCChhhEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC--CCCCC--CC
Confidence 66644 556678899998 9999996 3577777777777777874 788877777 55444 47
Q ss_pred CChHhHHHHHHHHHHHHHHHHh---hcCCeeEEE
Q 042388 235 FGFDTACKIFSEMIGNVMTDAR---STGKYYHFV 265 (567)
Q Consensus 235 ~GFdTA~k~~ae~I~ni~~da~---S~~k~~~fV 265 (567)
+.-++.++..++++.-.-..+. ....-+|+|
T Consensus 139 L~d~~vA~Raa~L~~~aE~~a~~~~~~~~~vYvI 172 (426)
T PRK15458 139 LTDEIVAERAARLAKIAEETCREHFGESDLVYVI 172 (426)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEe
Confidence 7789999999988875543332 222335676
No 161
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=40.93 E-value=2.1e+02 Score=30.20 Aligned_cols=50 Identities=22% Similarity=0.381 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHHHHc--CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 168 TPEQFKQAEETAKKL--DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~--~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
+++++.++.+.+++. +.|++||+-|-|||.-.+.+-..+.+. .+.+||-.
T Consensus 55 t~~~~~~la~~i~~~~~~~~GvVVtHGTDTme~tA~~Ls~~l~~-l~kPVVlT 106 (313)
T PF00710_consen 55 TPEDWLELARAIQAALDDYDGVVVTHGTDTMEETAFFLSLLLDN-LDKPVVLT 106 (313)
T ss_dssp -HHHHHHHHHHHHHHHTTCSEEEEE--STTHHHHHHHHHHHEES--SSEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCeEEEecCchHHHHHHHHHHHHhcC-CCCCEEEe
Confidence 567777776666665 699999999999999866655555443 24466654
No 162
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=39.42 E-value=38 Score=32.84 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=34.4
Q ss_pred HHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHH
Q 042388 179 AKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFS 245 (567)
Q Consensus 179 l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~a 245 (567)
+.+++.|+||+-||.|+...+..-.+.+++...+++|.|| |+|+.-.+..+-
T Consensus 39 ~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLGI---------------C~G~Qll~~~~G 90 (188)
T TIGR00566 39 IEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPILGV---------------CLGHQAMGQAFG 90 (188)
T ss_pred HHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCCEEEE---------------CHHHHHHHHHcC
Confidence 4567899999999998865532211222221225678884 999998877754
No 163
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=39.23 E-value=95 Score=34.24 Aligned_cols=50 Identities=22% Similarity=0.274 Sum_probs=34.0
Q ss_pred ChHHHHHHHHHHHHc---CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 168 TPEQFKQAEETAKKL---DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~---~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
+++++.++++.++++ +.||+||.=|-|||.-.+.+-.++.+. .+.+||-.
T Consensus 121 tp~~w~~La~~I~~~~~~~~dGvVVtHGTDTM~yTA~aLs~~l~~-~~kPVVlT 173 (404)
T TIGR02153 121 KPEYWIKIAEAVAKALKEGADGVVVAHGTDTMAYTAAALSFMFET-LPVPVVLV 173 (404)
T ss_pred CHHHHHHHHHHHHHHhhcCCCcEEEecCChhHHHHHHHHHHHhhC-CCCCEEEE
Confidence 677777777766554 589999999999998766544444432 23455544
No 164
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=39.17 E-value=1.2e+02 Score=30.08 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=16.1
Q ss_pred CCChHHHH-HHHHHHHHcCCCEEEEec
Q 042388 166 IETPEQFK-QAEETAKKLDLDGLVVIG 191 (567)
Q Consensus 166 ~~~~e~~~-~~~~~l~~~~id~LViIG 191 (567)
+.+.+.++ .+.+.+++++.|.+|+.|
T Consensus 62 ~~~~~~~~~~~~~~l~~~~~D~iv~~~ 88 (200)
T PRK05647 62 FPSREAFDAALVEALDAYQPDLVVLAG 88 (200)
T ss_pred cCchhHhHHHHHHHHHHhCcCEEEhHH
Confidence 33334333 456778888888777654
No 165
>PRK00861 putative lipid kinase; Reviewed
Probab=39.11 E-value=55 Score=33.91 Aligned_cols=57 Identities=12% Similarity=0.173 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 173 KQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 173 ~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
.+.++.....+.|.+|++|||||...+.. .+... ++++--+|.===||+. .++|...
T Consensus 47 ~~~a~~~~~~~~d~vv~~GGDGTl~evv~---~l~~~--~~~lgviP~GTgNdfA-----r~lgi~~ 103 (300)
T PRK00861 47 DQLAQEAIERGAELIIASGGDGTLSAVAG---ALIGT--DIPLGIIPRGTANAFA-----AALGIPD 103 (300)
T ss_pred HHHHHHHHhcCCCEEEEECChHHHHHHHH---HHhcC--CCcEEEEcCCchhHHH-----HHcCCCC
Confidence 34444455677899999999999776542 22222 4567778876677776 4666654
No 166
>PRK12361 hypothetical protein; Provisional
Probab=38.86 E-value=43 Score=38.00 Aligned_cols=51 Identities=18% Similarity=0.187 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCC
Q 042388 172 FKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLK 227 (567)
Q Consensus 172 ~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 227 (567)
..+.++.+.+.+.|.+|++|||||...+.. .+.. .++++--+|.==-||+.
T Consensus 286 a~~la~~~~~~~~d~Viv~GGDGTl~ev~~---~l~~--~~~~lgiiP~GTgNdfA 336 (547)
T PRK12361 286 AEALAKQARKAGADIVIACGGDGTVTEVAS---ELVN--TDITLGIIPLGTANALS 336 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcHHHHHHH---HHhc--CCCCEEEecCCchhHHH
Confidence 344555555678899999999999877652 2222 24567778877788887
No 167
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=38.80 E-value=1.6e+02 Score=32.70 Aligned_cols=95 Identities=17% Similarity=0.118 Sum_probs=59.2
Q ss_pred CCCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCC
Q 042388 86 ENKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDK 165 (567)
Q Consensus 86 ~~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k 165 (567)
+.-|++||||||- .+.+.+-++.-+- ..+|..+++-+. -.-+|-.
T Consensus 126 P~~p~~i~vits~-~~aa~~D~~~~~~----~r~p~~~~~~~~---------------------~~vQG~~--------- 170 (432)
T TIGR00237 126 PHFPKRVGVITSQ-TGAALADILHILK----RRDPSLKVVIYP---------------------TLVQGEG--------- 170 (432)
T ss_pred CCCCCEEEEEeCC-ccHHHHHHHHHHH----hhCCCceEEEec---------------------ccccCcc---------
Confidence 4568999999974 4455555555443 445655544111 1223321
Q ss_pred CCChHHHHHHHHHHHHcC-CCEEEEecCchhHHHHHHHHHHHhc---CCCCccEEE
Q 042388 166 IETPEQFKQAEETAKKLD-LDGLVVIGGDDSNTNACLLAENFRS---KDMKTRVIG 217 (567)
Q Consensus 166 ~~~~e~~~~~~~~l~~~~-id~LViIGGddS~t~A~~Lae~~~~---~g~~i~VIg 217 (567)
.+.++-++++.+...+ +|.+||+=|-||...-..+.++-.. ..++++||.
T Consensus 171 --a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis 224 (432)
T TIGR00237 171 --AVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIIS 224 (432)
T ss_pred --HHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEE
Confidence 3455666666666544 8999999999999887766555322 267788874
No 168
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=38.80 E-value=1.9e+02 Score=32.34 Aligned_cols=96 Identities=22% Similarity=0.227 Sum_probs=70.0
Q ss_pred CCCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCC
Q 042388 86 ENKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDK 165 (567)
Q Consensus 86 ~~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k 165 (567)
+..|++||||||= --+||+-++..++.+.|..+++-+.- .-+|-.
T Consensus 132 P~~p~~IGVITS~-----tgAairDIl~~~~rR~P~~~viv~pt---------------------~VQG~~--------- 176 (440)
T COG1570 132 PFFPKKIGVITSP-----TGAALRDILHTLSRRFPSVEVIVYPT---------------------LVQGEG--------- 176 (440)
T ss_pred CCCCCeEEEEcCC-----chHHHHHHHHHHHhhCCCCeEEEEec---------------------cccCCC---------
Confidence 4668999999973 23788888888888888877664321 123321
Q ss_pred CCChHHHHHHHHHHHHcC-CCEEEEecCchhHHHHHHHHHHHhc---CCCCccEEEe
Q 042388 166 IETPEQFKQAEETAKKLD-LDGLVVIGGDDSNTNACLLAENFRS---KDMKTRVIGC 218 (567)
Q Consensus 166 ~~~~e~~~~~~~~l~~~~-id~LViIGGddS~t~A~~Lae~~~~---~g~~i~VIgV 218 (567)
..+++-++++.+.+.+ +|.|||.=|-||...-..+.|+... ..++|+||.-
T Consensus 177 --A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvISA 231 (440)
T COG1570 177 --AAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVISA 231 (440)
T ss_pred --cHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhCCCCeEee
Confidence 3566788888888888 9999999999999998877765432 2567888853
No 169
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=38.41 E-value=75 Score=36.25 Aligned_cols=52 Identities=21% Similarity=0.339 Sum_probs=40.7
Q ss_pred ChHHHHHHHHHHHHcC---CCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccC
Q 042388 168 TPEQFKQAEETAKKLD---LDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 222 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~---id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 222 (567)
+.+..+++.+.+.+.+ -|.+|-|||--.++.|..+|-.+. + ++++|.||-|+
T Consensus 251 sl~~v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA~~y~-r--Gi~~i~vPTTl 305 (542)
T PRK14021 251 TIEVANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVAATWM-R--GIRYVNCPTSL 305 (542)
T ss_pred CHHHHHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHHHHHH-c--CCCEEEeCChH
Confidence 4567778888888884 899999999888888887775332 2 47899999885
No 170
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=38.23 E-value=72 Score=32.69 Aligned_cols=92 Identities=18% Similarity=0.273 Sum_probs=60.4
Q ss_pred CEEEEEeCCcccccCCCEEEcCccccccccccCCccccc--ccCCCCCChHHHHHHHHHHHHcCCCEEEEecCchhHH--
Q 042388 122 SKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMIC--SGRDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNT-- 197 (567)
Q Consensus 122 ~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LG--S~R~k~~~~e~~~~~~~~l~~~~id~LViIGGddS~t-- 197 (567)
..-+-+-+|..|- ...-|......+++.+|...+- |+|.. +..+++..+..+..++|+.+++++||-.-.
T Consensus 29 ~d~v~Vt~~~~g~----~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~--n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~ 102 (274)
T cd00537 29 PDFVSVTDGAGGS----TRDMTLLAAARILQEGGIEPIPHLTCRDR--NRIELQSILLGAHALGIRNILALRGDPPKGGD 102 (274)
T ss_pred CCEEEeCCCCCCc----hhhhHHHHHHHHHHhcCCCeeeecccCCC--CHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCC
Confidence 3445566666652 2223444556677777765544 45554 468899999999999999999999886543
Q ss_pred ----------HHHHHHHHHhcC---CCCccEEEec
Q 042388 198 ----------NACLLAENFRSK---DMKTRVIGCP 219 (567)
Q Consensus 198 ----------~A~~Lae~~~~~---g~~i~VIgVP 219 (567)
.|..|-+..++. +..+.|.+-|
T Consensus 103 ~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yP 137 (274)
T cd00537 103 QPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYP 137 (274)
T ss_pred CCCCCCCCCCCHHHHHHHHHHhcCCCCccccccCC
Confidence 377777777654 3444455555
No 171
>PRK04155 chaperone protein HchA; Provisional
Probab=38.00 E-value=2.4e+02 Score=29.54 Aligned_cols=40 Identities=10% Similarity=0.087 Sum_probs=25.4
Q ss_pred HHHHHHHHH--HcCCCEEEEecCchhHHH------HHHHHHHHhcCCC
Q 042388 172 FKQAEETAK--KLDLDGLVVIGGDDSNTN------ACLLAENFRSKDM 211 (567)
Q Consensus 172 ~~~~~~~l~--~~~id~LViIGGddS~t~------A~~Lae~~~~~g~ 211 (567)
+..+.+.+. ..+.|+|||-||-+.+.. +..|...|.+++.
T Consensus 134 l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K 181 (287)
T PRK04155 134 LADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDR 181 (287)
T ss_pred HHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCC
Confidence 444444444 468899999999887553 3444555555553
No 172
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=37.72 E-value=3.1e+02 Score=24.84 Aligned_cols=70 Identities=16% Similarity=0.144 Sum_probs=48.0
Q ss_pred ecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecC
Q 042388 190 IGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDARSTGKYYHFVRLMG 269 (567)
Q Consensus 190 IGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~ni~~da~S~~k~~~fVevMG 269 (567)
-||.|.-+.+..|+.++.++|..+.+ +|-|..++.++ ..|-+|-+-+
T Consensus 8 kgg~gkt~~~~~~a~~~~~~~~~~~~------vd~D~~~~~~~---------------------------yd~VIiD~p~ 54 (139)
T cd02038 8 KGGVGKTNISANLALALAKLGKRVLL------LDADLGLANLD---------------------------YDYIIIDTGA 54 (139)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCcEEE------EECCCCCCCCC---------------------------CCEEEEECCC
Confidence 48899989999999999988865444 57887766542 2255677654
Q ss_pred CCCcHHHHHhhhhcCCcEEEECCcch
Q 042388 270 RAASHITLECALQTHPNITIIGEEVA 295 (567)
Q Consensus 270 R~ag~LAL~~aLat~pnivlIpEe~~ 295 (567)
..++.+.. +..++|.++++=++.
T Consensus 55 -~~~~~~~~--~l~~aD~vviv~~~~ 77 (139)
T cd02038 55 -GISDNVLD--FFLAADEVIVVTTPE 77 (139)
T ss_pred -CCCHHHHH--HHHhCCeEEEEcCCC
Confidence 56666654 344678888765553
No 173
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=37.46 E-value=35 Score=32.85 Aligned_cols=53 Identities=17% Similarity=0.244 Sum_probs=38.1
Q ss_pred HHHHHHHHHHH---cCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCC
Q 042388 171 QFKQAEETAKK---LDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDL 226 (567)
Q Consensus 171 ~~~~~~~~l~~---~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL 226 (567)
+..-+++.++- -++|+++++-||+=++- |.+.++++|..+-++|+|+....+|
T Consensus 90 Dv~laIDame~~~~~~iD~~vLvSgD~DF~~---Lv~~lre~G~~V~v~g~~~~ts~~L 145 (160)
T TIGR00288 90 DVRMAVEAMELIYNPNIDAVALVTRDADFLP---VINKAKENGKETIVIGAEPGFSTAL 145 (160)
T ss_pred cHHHHHHHHHHhccCCCCEEEEEeccHhHHH---HHHHHHHCCCEEEEEeCCCCChHHH
Confidence 35555555544 68999999999998765 4456667898888888876544444
No 174
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=37.24 E-value=4.6e+02 Score=26.84 Aligned_cols=89 Identities=25% Similarity=0.341 Sum_probs=56.1
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKI 166 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~ 166 (567)
.+...||+++..-..|-.+.++.|+.++++.. +..++ + ...+
T Consensus 62 ~~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~--g~~~~--------------~----------~~~~------------ 103 (342)
T PRK10014 62 GQSGVIGLIVRDLSAPFYAELTAGLTEALEAQ--GRMVF--------------L----------LQGG------------ 103 (342)
T ss_pred CCCCEEEEEeCCCccchHHHHHHHHHHHHHHc--CCEEE--------------E----------EeCC------------
Confidence 34579999998888888999999999886532 22211 0 0010
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 167 ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 167 ~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
.+.+.....++.+...++||+|+.+.+..... +.+.+.+.+ ++||.+
T Consensus 104 ~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~~~~l~~~~--iPvV~~ 150 (342)
T PRK10014 104 KDGEQLAQRFSTLLNQGVDGVVIAGAAGSSDD---LREMAEEKG--IPVVFA 150 (342)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeCCCCCcHH---HHHHHhhcC--CCEEEE
Confidence 12344567788888999999999987643221 223333444 567654
No 175
>PRK05637 anthranilate synthase component II; Provisional
Probab=36.87 E-value=58 Score=32.34 Aligned_cols=52 Identities=12% Similarity=0.113 Sum_probs=37.3
Q ss_pred HHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHH
Q 042388 179 AKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFS 245 (567)
Q Consensus 179 l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~a 245 (567)
+.+.+.|++|+-||-++-..+....+.++...-+++|.|| |+|+...+..+.
T Consensus 40 l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGI---------------ClG~Qlla~alG 91 (208)
T PRK05637 40 ILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGI---------------CLGFQALLEHHG 91 (208)
T ss_pred HHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEE---------------cHHHHHHHHHcC
Confidence 4467899999999999998875544444322225678874 999998887753
No 176
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=36.74 E-value=3.2e+02 Score=28.82 Aligned_cols=51 Identities=18% Similarity=0.087 Sum_probs=35.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcC
Q 042388 172 FKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDG 224 (567)
Q Consensus 172 ~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDN 224 (567)
+..++...++.+.+.+|..||-.+|+.+ .||-+.+..|++ .+|-+|.+++.
T Consensus 52 ~~~~l~~a~~~g~~~vvt~g~s~gN~g~-alA~~a~~~G~~-~~i~vp~~~~~ 102 (331)
T PRK03910 52 LEFLLADALAQGADTLITAGAIQSNHAR-QTAAAAAKLGLK-CVLLLENPVPT 102 (331)
T ss_pred HHHHHHHHHHcCCCEEEEcCcchhHHHH-HHHHHHHHhCCc-EEEEEcCCCCc
Confidence 4445566667888999987765566553 456666777886 55668988774
No 177
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=36.73 E-value=2.6e+02 Score=23.56 Aligned_cols=64 Identities=22% Similarity=0.231 Sum_probs=42.8
Q ss_pred cCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCC
Q 042388 191 GGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDARSTGKYYHFVRLMGR 270 (567)
Q Consensus 191 GGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~ni~~da~S~~k~~~fVevMGR 270 (567)
||.|.-+.|..|+.++.++|.++-++ |.|.. . -+-+|.+-+.
T Consensus 9 gG~Gkst~~~~la~~~~~~~~~vl~~------d~d~~-------------------------------~-d~viiD~p~~ 50 (104)
T cd02042 9 GGVGKTTTAVNLAAALARRGKRVLLI------DLDPQ-------------------------------Y-DYIIIDTPPS 50 (104)
T ss_pred CCcCHHHHHHHHHHHHHhCCCcEEEE------eCCCC-------------------------------C-CEEEEeCcCC
Confidence 78999999999999998877654444 55543 2 2567776554
Q ss_pred CCcHHHHHhhhhcCCcEEEECCcch
Q 042388 271 AASHITLECALQTHPNITIIGEEVA 295 (567)
Q Consensus 271 ~ag~LAL~~aLat~pnivlIpEe~~ 295 (567)
.+..+. .++ ..+|.+++|=++.
T Consensus 51 -~~~~~~-~~l-~~ad~viv~~~~~ 72 (104)
T cd02042 51 -LGLLTR-NAL-AAADLVLIPVQPS 72 (104)
T ss_pred -CCHHHH-HHH-HHCCEEEEeccCC
Confidence 455554 333 3578888877654
No 178
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=36.21 E-value=4.1e+02 Score=25.76 Aligned_cols=85 Identities=20% Similarity=0.157 Sum_probs=52.6
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChH
Q 042388 91 KIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPE 170 (567)
Q Consensus 91 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e 170 (567)
.||||+.+-+.|-...++.|+-+.+++. +..+.-+. ... .+++
T Consensus 1 ~i~vi~~~~~~~~~~~~~~gi~~~~~~~--~~~~~~~~------------------------~~~-----------~~~~ 43 (264)
T cd01574 1 TIGVVTTDLALHGPSSTLAAIESAAREA--GYAVTLSM------------------------LAE-----------ADEE 43 (264)
T ss_pred CEEEEeCCCCcccHHHHHHHHHHHHHHC--CCeEEEEe------------------------CCC-----------CchH
Confidence 3889998888888888888888887642 22222000 000 0123
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
...+.++.+.+.++||+++.+-+.+.. + +.+ +.+.+ ++||.+
T Consensus 44 ~~~~~~~~l~~~~vdgiii~~~~~~~~-~--~~~-~~~~~--ipvv~~ 85 (264)
T cd01574 44 ALRAAVRRLLAQRVDGVIVNAPLDDAD-A--ALA-AAPAD--VPVVFV 85 (264)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCChH-H--HHH-HHhcC--CCEEEE
Confidence 455677888899999999998765543 2 222 23344 566665
No 179
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=35.94 E-value=1e+02 Score=28.10 Aligned_cols=90 Identities=21% Similarity=0.296 Sum_probs=54.2
Q ss_pred CEEEEEeCCcccccCC----------CEEEcCccccccccccCCcccccccCCCCCChHHHHHHHHHHHHcCCCEEEEec
Q 042388 122 SKLYGFKGGPAGIMKC----------KYVELSTEYIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVIG 191 (567)
Q Consensus 122 ~~v~Gf~~G~~GLl~~----------~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e~~~~~~~~l~~~~id~LViIG 191 (567)
.-++++=+|..=+.+. ++=-++++..+.|.+.|- .++-.. .| +..++++|++.+.+++.+-++++|
T Consensus 17 ~~~i~aDgGa~~l~~~~g~~Pd~iiGDfDSi~~~~~~~~~~~~~-~~~~~p-~k--D~TD~e~Al~~~~~~~~~~i~v~G 92 (123)
T PF04263_consen 17 DFIIAADGGANRLYELFGIKPDLIIGDFDSISPEVLEFYKSKGV-EIIHFP-EK--DYTDLEKALEYAIEQGPDEIIVLG 92 (123)
T ss_dssp SEEEEETTHHHHHHHTTTT--SEEEC-SSSS-HHHHHHHHHCTT-EEEEE--ST--TS-HHHHHHHHHHHTTTSEEEEES
T ss_pred CEEEEEchHHHHHHHhcCCCCCEEEecCCCCChHHHHHHHhhcc-ceeccc-cc--ccCHHHHHHHHHHHCCCCEEEEEe
Confidence 3445555554444333 333445555666777743 355444 33 456799999999999999999999
Q ss_pred Cch-----hHHHHHHHHHHHhcCCCCccEE
Q 042388 192 GDD-----SNTNACLLAENFRSKDMKTRVI 216 (567)
Q Consensus 192 Gdd-----S~t~A~~Lae~~~~~g~~i~VI 216 (567)
+-| ++.+...|.++. +.++++.+|
T Consensus 93 a~GgR~DH~lanl~~l~~~~-~~~~~i~li 121 (123)
T PF04263_consen 93 ALGGRFDHTLANLNLLYKYK-KRGIKIVLI 121 (123)
T ss_dssp -SSSSHHHHHHHHHHHHHHH-TTTSEEEEE
T ss_pred cCCCcHHHHHHHHHHHHHHH-HcCCeEEEE
Confidence 976 566666676654 456554443
No 180
>PLN02735 carbamoyl-phosphate synthase
Probab=35.87 E-value=3.3e+02 Score=34.06 Aligned_cols=101 Identities=14% Similarity=0.119 Sum_probs=59.0
Q ss_pred CCCCcEEEEEecCCCCch--h--hHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccc
Q 042388 86 ENKSLKIGVVLSGGQAPG--G--HNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICS 161 (567)
Q Consensus 86 ~~~~~~IgIv~sGG~aPG--~--nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS 161 (567)
....++|-|+=||.---| . --+...++.+|+. .|.+++.+-.-++-.-. +.+.-+.+...
T Consensus 571 ~~~~kkvlilG~G~~~igq~iefd~~~v~~~~alr~--~G~~tI~v~~npetvst------d~~~aD~~y~~-------- 634 (1102)
T PLN02735 571 PTNKKKVLILGGGPNRIGQGIEFDYCCCHASFALQD--AGYETIMMNSNPETVST------DYDTSDRLYFE-------- 634 (1102)
T ss_pred cCCCceEEEeCccccccCcccccceeHHHHHHHHHH--cCCeEEEEeCCCccccC------CcccCCeEEEE--------
Confidence 345678887777753233 1 1223334455544 46777766644432111 11111111111
Q ss_pred cCCCCCChHHHHHHHHHHHHcCCCEEEE-ecCchhHHHHHHHHHHHhcC
Q 042388 162 GRDKIETPEQFKQAEETAKKLDLDGLVV-IGGDDSNTNACLLAENFRSK 209 (567)
Q Consensus 162 ~R~k~~~~e~~~~~~~~l~~~~id~LVi-IGGddS~t~A~~Lae~~~~~ 209 (567)
+-.++.+++.|++.++|+++. +||+-.+.-|..+.+.+.++
T Consensus 635 -------pl~~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~ 676 (1102)
T PLN02735 635 -------PLTVEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKN 676 (1102)
T ss_pred -------eCCHHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhc
Confidence 122678899999999999996 88888888888888876654
No 181
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=35.56 E-value=62 Score=34.21 Aligned_cols=66 Identities=27% Similarity=0.455 Sum_probs=45.8
Q ss_pred CCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCC
Q 042388 88 KSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIE 167 (567)
Q Consensus 88 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~ 167 (567)
+...||+++.--..|=-..++.|+-+.+... |..+ +|..+..
T Consensus 57 ~s~~Ig~i~p~~~~~~~~~i~~gi~~~~~~~--gy~~---------------------------------~l~~~~~--- 98 (333)
T COG1609 57 RTKTIGLVVPDITNPFFAEILKGIEEAAREA--GYSL---------------------------------LLANTDD--- 98 (333)
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHc--CCEE---------------------------------EEECCCC---
Confidence 4567888877555577777777777765432 2111 2333333
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEec
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIG 191 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIG 191 (567)
+++..+.+++.+...++||+|+.|
T Consensus 99 ~~~~e~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 99 DPEKEREYLETLLQKRVDGLILLG 122 (333)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEec
Confidence 567788999999999999999999
No 182
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=35.55 E-value=5.1e+02 Score=26.59 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=47.4
Q ss_pred CCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCC
Q 042388 88 KSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIE 167 (567)
Q Consensus 88 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~ 167 (567)
+...|||++..-+.|=...++.|+-+.++.. +.+++-+ .++ .
T Consensus 58 ~~~~i~vi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~------------------------~~~------------~ 99 (341)
T PRK10703 58 HTKSIGLLATSSEAPYFAEIIEAVEKNCYQK--GYTLILC------------------------NAW------------N 99 (341)
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHC--CCEEEEE------------------------eCC------------C
Confidence 4468999998878888888999998886532 2332210 001 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhH
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSN 196 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~ 196 (567)
+.+...+.++.+...++||+++.+++.+.
T Consensus 100 ~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 128 (341)
T PRK10703 100 NLEKQRAYLSMLAQKRVDGLLVMCSEYPE 128 (341)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCH
Confidence 23344566677888999999999876443
No 183
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=34.98 E-value=2.1e+02 Score=26.59 Aligned_cols=45 Identities=11% Similarity=0.106 Sum_probs=34.0
Q ss_pred ChHHHHHHHHHHHHcC---CCEEEEecC-chhHHHHHHHHHHHhcCCCC
Q 042388 168 TPEQFKQAEETAKKLD---LDGLVVIGG-DDSNTNACLLAENFRSKDMK 212 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~---id~LViIGG-ddS~t~A~~Lae~~~~~g~~ 212 (567)
+.+.+.++++.+++.+ +...+++|= .++......+.+++.+.+..
T Consensus 134 ~~~~~~~~i~~~~~~g~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 182 (216)
T smart00729 134 TVEDVLEAVEKLREAGPIKVSTDLIVGLPGETEEDFEETLKLLKELGPD 182 (216)
T ss_pred CHHHHHHHHHHHHHhCCcceEEeEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 4578888999999999 555566663 36788888888888777754
No 184
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=34.84 E-value=84 Score=35.35 Aligned_cols=111 Identities=16% Similarity=0.158 Sum_probs=59.1
Q ss_pred HHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcc--cccccCCCCCChHHHHHHHHHHHHcCCCEEE
Q 042388 111 IFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFD--MICSGRDKIETPEQFKQAEETAKKLDLDGLV 188 (567)
Q Consensus 111 l~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~--~LGS~R~k~~~~e~~~~~~~~l~~~~id~LV 188 (567)
+-+++....+-.+++-|.|=..|=-+ -..+-++.+..+...-|.. +.-|.+ +.+-...++.+...+.|++|
T Consensus 101 ~~~~~~~~~~~kr~lvIvNP~SGkg~--a~k~~~~~v~~~L~~~gi~~~v~~T~~-----~ghA~~la~~~~~~~~D~VV 173 (481)
T PLN02958 101 LRDYLDSLGRPKRLLVFVNPFGGKKS--ASKIFFDVVKPLLEDADIQLTIQETKY-----QLHAKEVVRTMDLSKYDGIV 173 (481)
T ss_pred HHHHHhhccCCcEEEEEEcCCCCCcc--hhHHHHHHHHHHHHHcCCeEEEEeccC-----ccHHHHHHHHhhhcCCCEEE
Confidence 33444333333467777776665322 1111122344333334432 222221 22334444555566789999
Q ss_pred EecCchhHHHHH-HHHHHH-hcCCCCccEEEecccCcCCCCC
Q 042388 189 VIGGDDSNTNAC-LLAENF-RSKDMKTRVIGCPKTIDGDLKC 228 (567)
Q Consensus 189 iIGGddS~t~A~-~Lae~~-~~~g~~i~VIgVPKTIDNDL~~ 228 (567)
++|||||...+. -|.+.- .+.+.++++--||.==-||+.-
T Consensus 174 ~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfAr 215 (481)
T PLN02958 174 CVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAK 215 (481)
T ss_pred EEcCCCHHHHHHHHHhhCccccccccCceEEecCcCcchhhh
Confidence 999999976653 332210 0114567888899988999874
No 185
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=34.73 E-value=99 Score=30.86 Aligned_cols=95 Identities=18% Similarity=0.283 Sum_probs=58.2
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcc------cc--cCCCEEEcCc--cccccccccCCcccc
Q 042388 90 LKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPA------GI--MKCKYVELST--EYIYPYRNQGGFDMI 159 (567)
Q Consensus 90 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~------GL--l~~~~~eLt~--~~v~~~~n~GG~~~L 159 (567)
+|||||-.-|.+. + -+.+. +..+|.+|-+|..-.. |+ ++.++.+++. +++.+ +|.+
T Consensus 1 mKIaiIgAsG~~G--s----~i~~E--A~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g------~DaV 66 (211)
T COG2910 1 MKIAIIGASGKAG--S----RILKE--ALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAG------HDAV 66 (211)
T ss_pred CeEEEEecCchhH--H----HHHHH--HHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcC------CceE
Confidence 5899998877753 2 24444 3357899999875543 32 3456667666 44443 3332
Q ss_pred cccCC-C-CCC----hHHHHHHHHHHHHcCCCEEEEecCchhHHH
Q 042388 160 CSGRD-K-IET----PEQFKQAEETAKKLDLDGLVVIGGDDSNTN 198 (567)
Q Consensus 160 GS~R~-k-~~~----~e~~~~~~~~l~~~~id~LViIGGddS~t~ 198 (567)
=+.-. . ... ....+..++.++.-+..-|+|+||-||+.-
T Consensus 67 IsA~~~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAGSL~i 111 (211)
T COG2910 67 ISAFGAGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAGSLEI 111 (211)
T ss_pred EEeccCCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCccceEE
Confidence 22211 1 111 122566778888889999999999999643
No 186
>PRK07591 threonine synthase; Validated
Probab=34.72 E-value=1.2e+02 Score=33.41 Aligned_cols=145 Identities=13% Similarity=0.081 Sum_probs=75.8
Q ss_pred HHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCC------CCCCCCCCCC-ChHhHHHHHH
Q 042388 173 KQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGD------LKCKEVPTSF-GFDTACKIFS 245 (567)
Q Consensus 173 ~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDND------L~~~~ie~S~-GFdTA~k~~a 245 (567)
.-++..+++.+.+.++ .+..| |+ +..||-|.+..|++ ++|.||.++... ..+-.+...- .||.|.+...
T Consensus 126 ~~~v~~A~~~g~~~vv-~aSsG-N~-g~alA~~aa~~Gl~-~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g~~d~a~~~a~ 201 (421)
T PRK07591 126 SVALTAARELGFTTVA-CASTG-NL-ANSVAAHAARAGLD-SCVFIPADLEAGKIVGTLVYGPTLVAVDGNYDDVNRLCS 201 (421)
T ss_pred HHHHHHHHHcCCCEEE-EeCCC-HH-HHHHHHHHHHcCCC-EEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHH
Confidence 3445667778888875 44443 33 44577788888987 677799876521 1122221122 3666655555
Q ss_pred HHHHHH-HHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcC---CcEEEECCcchhhhcchHhHHHHHHHHHHHHHHcC--
Q 042388 246 EMIGNV-MTDARSTGKYYHFVRLMGRAASHITLECALQTH---PNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAG-- 319 (567)
Q Consensus 246 e~I~ni-~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~---pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~g-- 319 (567)
+...+. ..-..+....-|+|| | .+.+++|..-|.+ ||.+++|=---. + .-.+...+++..+.|
T Consensus 202 ~~~~~~~~~~~~n~~~~p~~ie--G--~~Tia~Ei~eQl~~~~pD~iv~pvG~Gg---~----~~Gv~~g~kel~~~g~i 270 (421)
T PRK07591 202 ELANEHEGWGFVNINLRPYYAE--G--SKTLGYEVAEQLGWRLPDQVVAPLASGS---L----LTKIDKGFQELIKVGLV 270 (421)
T ss_pred HHHHhcCCEEEecCCCCccccc--c--hHHHHHHHHHHcCCCCCCEEEEeCCchH---H----HHHHHHHHHHHHhcCCc
Confidence 443321 000000001123333 2 2458999999964 899999855331 2 333444444433322
Q ss_pred --C-CeEEEEEeCCCC
Q 042388 320 --Y-NYGVILIPEGLI 332 (567)
Q Consensus 320 --k-~~gvIli~EGl~ 332 (567)
. ..-+.+=|||.-
T Consensus 271 ~~~~prii~Vq~~g~~ 286 (421)
T PRK07591 271 EDKPVRVFGAQAEGCS 286 (421)
T ss_pred cCCCceEEEEecCCCC
Confidence 2 245566678753
No 187
>CHL00101 trpG anthranilate synthase component 2
Probab=34.22 E-value=47 Score=32.25 Aligned_cols=51 Identities=14% Similarity=0.296 Sum_probs=32.6
Q ss_pred HHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHH
Q 042388 179 AKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIF 244 (567)
Q Consensus 179 l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ 244 (567)
+.+++.|+||+.||.++-.......+..+....+++|.|| |+|+.-.+..+
T Consensus 39 ~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGI---------------ClG~Qlla~~~ 89 (190)
T CHL00101 39 IKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGV---------------CLGHQSIGYLF 89 (190)
T ss_pred HhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEE---------------chhHHHHHHHh
Confidence 4557899999999999876533222221111234677774 99998777643
No 188
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=34.12 E-value=3.8e+02 Score=27.63 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=30.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCC
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDM 211 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~ 211 (567)
+++..+.+++.++++++|+++. +-++.....+.+++.|.+.|.
T Consensus 54 ~~~~~~~l~~~~~~~~id~ii~-~~d~~~~~~a~~~~~l~~~g~ 96 (326)
T PRK12767 54 DPNYIDRLLDICKKEKIDLLIP-LIDPELPLLAQNRDRFEEIGV 96 (326)
T ss_pred ChhHHHHHHHHHHHhCCCEEEE-CCcHHHHHHHHHHHHHHHcCc
Confidence 3456788899999999997654 566666666667777766653
No 189
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=34.05 E-value=3.1e+02 Score=26.60 Aligned_cols=97 Identities=23% Similarity=0.289 Sum_probs=53.9
Q ss_pred EEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChHH
Q 042388 92 IGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPEQ 171 (567)
Q Consensus 92 IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e~ 171 (567)
|||++..-+.|-...++.|+.+.++.. |.++. ++. . . .+. +
T Consensus 2 I~~i~~~~~~~~~~~~~~~i~~~~~~~--g~~~~-------------~~~-------------~------~----~~~-~ 42 (266)
T cd06278 2 IGVVVADLDNPFYSELLEALSRALQAR--GYQPL-------------LIN-------------T------D----DDE-D 42 (266)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHC--CCeEE-------------EEc-------------C------C----CCH-H
Confidence 677777666777777888887775532 22221 000 0 0 011 2
Q ss_pred HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChH
Q 042388 172 FKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFD 238 (567)
Q Consensus 172 ~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFd 238 (567)
..+.++.+...++|++|+.+.+.+-. . .+.+.+.| ++||.+ |.+.....+ .++|+|
T Consensus 43 ~~~~i~~~~~~~vdgiii~~~~~~~~---~-~~~~~~~~--ipvV~~----~~~~~~~~~-~~v~~d 98 (266)
T cd06278 43 LDAALRQLLQYRVDGVIVTSGTLSSE---L-AEECRRNG--IPVVLI----NRYVDGPGV-DAVCSD 98 (266)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCHH---H-HHHHhhcC--CCEEEE----CCccCCCCC-CEEEEC
Confidence 34556777889999999988764321 1 23344444 568776 444332222 356665
No 190
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=33.62 E-value=77 Score=31.09 Aligned_cols=67 Identities=22% Similarity=0.350 Sum_probs=44.3
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChH
Q 042388 91 KIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPE 170 (567)
Q Consensus 91 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e 170 (567)
.|||++..-+.|=...++.|+-++++. .+.++. + ..+. .+++
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~--~g~~~~-------------~-----------~~~~------------~~~~ 42 (269)
T cd06275 1 TIGMLVTTSTNPFFAEVVRGVEQYCYR--QGYNLI-------------L-----------CNTE------------GDPE 42 (269)
T ss_pred CEEEEeCCCCcchHHHHHHHHHHHHHH--cCCEEE-------------E-----------EeCC------------CChH
Confidence 378888777777788888888777643 223321 0 0000 1234
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchh
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDDS 195 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGddS 195 (567)
...+.++.+...++|++|+.+.+..
T Consensus 43 ~~~~~i~~l~~~~vdgiii~~~~~~ 67 (269)
T cd06275 43 RQRSYLRMLAQKRVDGLLVMCSEYD 67 (269)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCC
Confidence 5567788899999999999997654
No 191
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=33.35 E-value=3.1e+02 Score=34.01 Aligned_cols=48 Identities=25% Similarity=0.459 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHcCCCEEEE-ecCchhHHHHHHHHHHHhcCCCCccEEEe-cccCcC
Q 042388 171 QFKQAEETAKKLDLDGLVV-IGGDDSNTNACLLAENFRSKDMKTRVIGC-PKTIDG 224 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LVi-IGGddS~t~A~~Lae~~~~~g~~i~VIgV-PKTIDN 224 (567)
..+.+++.+++.++|++++ +||+-.+. +++.+.+.| ++++|- |.+|+.
T Consensus 617 ~~e~v~~i~~~e~~dgVi~~~g~~~~~~----la~~le~~G--i~ilg~s~~ai~~ 666 (1066)
T PRK05294 617 TLEDVLEIIEKEKPKGVIVQFGGQTPLK----LAKALEAAG--VPILGTSPDAIDL 666 (1066)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCchhHHH----HHHHHHHCC--CceeCCCHHHHHH
Confidence 3677888999999999998 67776553 445555545 467775 467653
No 192
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=33.14 E-value=92 Score=28.01 Aligned_cols=42 Identities=21% Similarity=0.311 Sum_probs=30.0
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCC---ccEEEecccCcCCCC
Q 042388 183 DLDGLVVIGGDDSNTNACLLAENFRSKDMK---TRVIGCPKTIDGDLK 227 (567)
Q Consensus 183 ~id~LViIGGddS~t~A~~Lae~~~~~g~~---i~VIgVPKTIDNDL~ 227 (567)
..|.+|++|||||...+.. .+.+...+ +++.-+|.==-||+.
T Consensus 49 ~~d~vvv~GGDGTi~~vvn---~l~~~~~~~~~~plgiiP~GTgNdfa 93 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLN---ALDKRELPLPEPPVAVLPLGTGNDLA 93 (124)
T ss_pred cCCEEEEEccccHHHHHHH---HHHhcccccCCCcEEEeCCCChhHHH
Confidence 4679999999999877642 22222322 678888987788886
No 193
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=32.94 E-value=63 Score=33.88 Aligned_cols=41 Identities=22% Similarity=0.377 Sum_probs=31.7
Q ss_pred HHHHHhhcCCeeEEEEecCC-CCcHHHHHhhhhcCCcEEEEC
Q 042388 251 VMTDARSTGKYYHFVRLMGR-AASHITLECALQTHPNITIIG 291 (567)
Q Consensus 251 i~~da~S~~k~~~fVevMGR-~ag~LAL~~aLat~pnivlIp 291 (567)
.....+...+.+.||=+||- |.||++|--.-..+.++++++
T Consensus 13 ~~~~~~~~~~~igfVPTMGaLHeGHlsLi~~A~~~~d~vVVS 54 (280)
T PF02569_consen 13 WIRAWRKAGKTIGFVPTMGALHEGHLSLIRRARAENDVVVVS 54 (280)
T ss_dssp HHHHHHHTTSSEEEEEE-SS--HHHHHHHHHHHHHSSEEEEE
T ss_pred HHHHHHHcCCeEEEECCCchhhHHHHHHHHHHHhCCCEEEEE
Confidence 33455556778999999997 899999998888899998873
No 194
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=32.88 E-value=53 Score=31.28 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEeccc
Q 042388 167 ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT 221 (567)
Q Consensus 167 ~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT 221 (567)
++++.+.+.++++++.+.+.+|.+-|-. +.-+-.++-. ...+|||||-.
T Consensus 39 R~p~~l~~~~~~~~~~~~~viIa~AG~~-a~Lpgvva~~-----t~~PVIgvP~~ 87 (150)
T PF00731_consen 39 RTPERLLEFVKEYEARGADVIIAVAGMS-AALPGVVASL-----TTLPVIGVPVS 87 (150)
T ss_dssp TSHHHHHHHHHHTTTTTESEEEEEEESS---HHHHHHHH-----SSS-EEEEEE-
T ss_pred CCHHHHHHHHHHhccCCCEEEEEECCCc-ccchhhheec-----cCCCEEEeecC
Confidence 3677888888888888888777766653 3334445443 36799999953
No 195
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=32.20 E-value=5.7e+02 Score=26.22 Aligned_cols=172 Identities=22% Similarity=0.282 Sum_probs=100.0
Q ss_pred EcCccccccccccCCcccccccCCCCCChHHHHHHHHHHHHcCCCEEEEe----cCchhHHHHHHHHHHHhcCCCCccEE
Q 042388 141 ELSTEYIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVI----GGDDSNTNACLLAENFRSKDMKTRVI 216 (567)
Q Consensus 141 eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e~~~~~~~~l~~~~id~LViI----GGddS~t~A~~Lae~~~~~g~~i~VI 216 (567)
+++.+++.......+. +-.|+ . .+++++.++.+.+.+.+-|.+++| |=.||..+|...++.+ .+.++.||
T Consensus 41 ~i~~~efy~~l~~~~~-~p~TS--~-ps~~~~~~~f~~~~~~gyd~ii~i~iSs~LSgty~~a~~aa~~~--~~~~i~Vi 114 (280)
T PF02645_consen 41 DISPEEFYEKLRESGE-IPKTS--Q-PSPGEFEEAFEKLLEEGYDEIIVITISSGLSGTYNSARLAAKML--PDIKIHVI 114 (280)
T ss_dssp TSCHHHHHHHHHHTTS-EEEEE------HHHHHHHHHHHHHTTTSEEEEEES-TTT-THHHHHHHHHHHH--TTTEEEEE
T ss_pred CCCHHHHHHHHHhcCC-Cceec--C-CCHHHHHHHHHHHHHCCCCeEEEEeCCcchhhHHHHHHHHHhhc--CcCEEEEE
Confidence 6666665554433342 43343 2 368899999999889999988877 5678888998888887 34455555
Q ss_pred EecccCcCCCCCCCCCCCCChHhHHHHHHHHHHH------HHHHH---hhcCCeeEEEEe------cCCCCcHHHHHh-h
Q 042388 217 GCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGN------VMTDA---RSTGKYYHFVRL------MGRAASHITLEC-A 280 (567)
Q Consensus 217 gVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~n------i~~da---~S~~k~~~fVev------MGR~ag~LAL~~-a 280 (567)
|.-. .|.|..=.+...++++.+ |...+ ....+.+|+++. =||=+.-.|+-+ .
T Consensus 115 ------DS~~------~s~g~g~lv~~a~~l~~~G~s~~ei~~~l~~~~~~~~~~f~~~~L~~L~kgGRis~~~a~ig~l 182 (280)
T PF02645_consen 115 ------DSKS------VSAGQGLLVLEAAKLIEQGKSFEEIVEKLEELRERTRTYFVVDDLKYLRKGGRISKAAAFIGNL 182 (280)
T ss_dssp ------E-SS-------HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTEEEEEEES-SHHHHHCTSSGHHHHHHHHC
T ss_pred ------eCCC------cchhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhceEEEEechHHHHHHCCCcCchhhhhhhh
Confidence 3211 266666555555555433 22222 222234677776 466555544333 3
Q ss_pred hhcCCcEEEEC-Cc-chhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Q 042388 281 LQTHPNITIIG-EE-VAAKKQTLKNVTDYITDIICKRSEAGYNYGVILIPEG 330 (567)
Q Consensus 281 Lat~pnivlIp-Ee-~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~EG 330 (567)
|.-.|=+.+-. +- +..+-.+.+..++.+.+.+.++.....++-+.+.-=+
T Consensus 183 L~IkPIl~~~~G~i~~~~k~Rg~kka~~~l~~~~~~~~~~~~~~~i~i~~~~ 234 (280)
T PF02645_consen 183 LNIKPILSFDDGEIEPVGKVRGRKKAIKKLIEIIKEEIKDPKNYRIAISHAG 234 (280)
T ss_dssp TTEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCTGCGEEEEEEESS
T ss_pred hcCcEEEEEECCEEEEEeeeccHHHHHHHHHHHhhhhhhcCCceeEEEEEcC
Confidence 45567555553 22 2234467777888888888666655566666665544
No 196
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=31.91 E-value=83 Score=35.20 Aligned_cols=53 Identities=25% Similarity=0.261 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCc
Q 042388 170 EQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTID 223 (567)
Q Consensus 170 e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTID 223 (567)
.+++.++..|-+-.+|.+|||||-.|. |...|+|-+.+.|.+.--|-=|.=|+
T Consensus 349 qeRQdA~~~L~~~~vDlmiVVGG~NSS-NT~~L~eIa~~~g~~sy~Ie~~~eI~ 401 (460)
T PLN02821 349 QERQDAMYKLVEEKLDLMLVVGGWNSS-NTSHLQEIAEHKGIPSYWIDSEERIG 401 (460)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCCCCc-cHHHHHHHHHHhCCCEEEECCHHHcC
Confidence 345555555555679999999999875 34568788877777766666676666
No 197
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=31.74 E-value=44 Score=32.35 Aligned_cols=51 Identities=20% Similarity=0.256 Sum_probs=33.3
Q ss_pred HHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHH
Q 042388 179 AKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIF 244 (567)
Q Consensus 179 l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ 244 (567)
+++++.|+||+-||.++........+.++....+++|.|| |+|+..-+...
T Consensus 39 ~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGI---------------C~G~Qlla~~~ 89 (191)
T PRK06774 39 IEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGV---------------CLGHQALGQAF 89 (191)
T ss_pred HHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEE---------------CHHHHHHHHHh
Confidence 4567899999999999875543222222211225678874 99988776654
No 198
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=31.62 E-value=49 Score=35.01 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCC-CCCCC-CCCCCChHhHHHHHHHH
Q 042388 170 EQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGD-LKCKE-VPTSFGFDTACKIFSEM 247 (567)
Q Consensus 170 e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDND-L~~~~-ie~S~GFdTA~k~~ae~ 247 (567)
.+++.++..|-+ ..|.+|||||-.|. |..+|++-+++.+.++-.|-=+.=||-+ +.+.. +-.|=|-.|=-..+-+.
T Consensus 198 ~~RQ~a~~~La~-~vD~miVVGg~~Ss-NT~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV 275 (298)
T PRK01045 198 QNRQEAVKELAP-QADLVIVVGSKNSS-NSNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEV 275 (298)
T ss_pred HHHHHHHHHHHh-hCCEEEEECCCCCc-cHHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHH
Confidence 445555555544 79999999999985 4467888887777666667667666633 33222 22244555555555555
Q ss_pred HHHH
Q 042388 248 IGNV 251 (567)
Q Consensus 248 I~ni 251 (567)
+..|
T Consensus 276 ~~~l 279 (298)
T PRK01045 276 IARL 279 (298)
T ss_pred HHHH
Confidence 5444
No 199
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=31.57 E-value=2.4e+02 Score=27.57 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 170 EQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 170 e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
+.....++.+...++|++++++.+.+..... .+++++ ++||.+
T Consensus 42 ~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~----~l~~~~--iPvv~~ 84 (268)
T cd06273 42 DREYAQARKLLERGVDGLALIGLDHSPALLD----LLARRG--VPYVAT 84 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCHHHHH----HHHhCC--CCEEEE
Confidence 4445667778888999999998764432222 333334 677775
No 200
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=31.26 E-value=2.9e+02 Score=26.76 Aligned_cols=83 Identities=18% Similarity=0.281 Sum_probs=50.2
Q ss_pred EEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChHH
Q 042388 92 IGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPEQ 171 (567)
Q Consensus 92 IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e~ 171 (567)
||||+..-..|-....+.|+-++++.. |.++. +..+. .+++.
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~~~~~ 43 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYEN--GYQML---------------------------------LMNTN---FSIEK 43 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHHC--CCEEE---------------------------------EEeCC---CCHHH
Confidence 788888888888888888888776432 22210 00000 12344
Q ss_pred HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 172 FKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 172 ~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
....++.+...++|++|+.+.+.+.. +.+.+.+.+ ++||.+
T Consensus 44 ~~~~i~~l~~~~~dgii~~~~~~~~~----~~~~~~~~~--ipvv~~ 84 (259)
T cd01542 44 EIEALELLARQKVDGIILLATTITDE----HREAIKKLN--VPVVVV 84 (259)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHH----HHHHHhcCC--CCEEEE
Confidence 45666778889999999998764322 223334444 556655
No 201
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=31.11 E-value=51 Score=26.08 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHH
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDDSNTNAC 200 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGddS~t~A~ 200 (567)
+.-++.+++++++|| +..||+.|+..|+
T Consensus 11 ~~p~~a~vf~~~gID--fCCgG~~~L~eA~ 38 (56)
T PF04405_consen 11 EDPRAARVFRKYGID--FCCGGNRSLEEAC 38 (56)
T ss_pred HChHHHHHHHHcCCc--ccCCCCchHHHHH
Confidence 345678999999999 5899999988775
No 202
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=31.04 E-value=95 Score=34.06 Aligned_cols=55 Identities=27% Similarity=0.285 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCC
Q 042388 170 EQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGD 225 (567)
Q Consensus 170 e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDND 225 (567)
.+++.+++.|-+.++|.+|||||--|. |...|++-+++.+.++-.|-=+.=||-+
T Consensus 275 ~~RQ~A~~~La~~~vD~miVVGG~nSS-NT~rL~eia~~~g~~ty~Ie~~~eL~~~ 329 (387)
T PRK13371 275 QERQDAMFSLVEEPLDLMVVIGGYNSS-NTTHLQEIAIERGIPSYHIDSPERILSG 329 (387)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCCCCc-cHHHHHHHHHhcCCCEEEECCHHHcCCc
Confidence 456666777766689999999999885 4467888888777776667667766653
No 203
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=30.90 E-value=1.4e+02 Score=29.47 Aligned_cols=80 Identities=20% Similarity=0.309 Sum_probs=51.9
Q ss_pred EEEEEeCCcccccCC---------CEEEcCccccccccccCCcccccccCCCCCChHHHHHHHHHHHHcCCCEEEEecCc
Q 042388 123 KLYGFKGGPAGIMKC---------KYVELSTEYIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVIGGD 193 (567)
Q Consensus 123 ~v~Gf~~G~~GLl~~---------~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e~~~~~~~~l~~~~id~LViIGGd 193 (567)
.++|+=+|..=+++. ++=-++++..+.|... |..++-....| +..++++|++.+.+++.+-++++|+-
T Consensus 20 ~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~-~~~~~~~~~eK--D~TD~e~Al~~~~~~~~~~i~i~Ga~ 96 (203)
T TIGR01378 20 LVIAADGGANHLLKLGLTPDLIVGDFDSIDEEELDFYKKA-GVKIIVFPPEK--DTTDLELALKYALERGADEITILGAT 96 (203)
T ss_pred EEEEEChHHHHHHHCCCCCCEEEeCcccCCHHHHHHHHHc-CCceEEcCCCC--CCCHHHHHHHHHHHCCCCEEEEEcCC
Confidence 677888887655543 3334444555555543 44344333333 44679999999999999999999985
Q ss_pred h-----hHHHHHHHHHH
Q 042388 194 D-----SNTNACLLAEN 205 (567)
Q Consensus 194 d-----S~t~A~~Lae~ 205 (567)
| ++.+...|.++
T Consensus 97 GgR~DH~lani~~L~~~ 113 (203)
T TIGR01378 97 GGRLDHTLANLNLLLEY 113 (203)
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 5 55666666655
No 204
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=30.84 E-value=1.2e+02 Score=31.28 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=42.3
Q ss_pred HHHHHHHHcCCCEEEEe-----cCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCC
Q 042388 174 QAEETAKKLDLDGLVVI-----GGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLK 227 (567)
Q Consensus 174 ~~~~~l~~~~id~LViI-----GGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 227 (567)
.+++.+-.++.|-.|.| +|-|+..+|..|+.++++.++++-+.|- .|+|+|-.
T Consensus 71 ~~lr~aLAmGaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~-~s~D~~tg 128 (256)
T PRK03359 71 KGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGD-GSSDLYAQ 128 (256)
T ss_pred HHHHHHHHcCCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcC-ccccCCCC
Confidence 56677778899977777 4669999999999999988888766664 78888765
No 205
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=30.77 E-value=2.5e+02 Score=26.92 Aligned_cols=84 Identities=20% Similarity=0.239 Sum_probs=52.9
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChH
Q 042388 91 KIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPE 170 (567)
Q Consensus 91 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e 170 (567)
+||++......|-...++.|+.++++.. +.++. .. ..+. +++
T Consensus 1 ~i~~v~~~~~~~~~~~~~~g~~~~~~~~--g~~~~---------------~~----------~~~~-----------~~~ 42 (264)
T cd06267 1 TIGVIVPDISNPFFAELLRGIEEAAREA--GYSVL---------------LC----------NSDE-----------DPE 42 (264)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHc--CCEEE---------------EE----------cCCC-----------CHH
Confidence 4888988888899999999999887541 11111 00 0011 233
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
.....++.+...++|++++.+.+.+... + +.+.+.+ ++||.+
T Consensus 43 ~~~~~~~~~~~~~~d~iii~~~~~~~~~---~-~~~~~~~--ipvv~~ 84 (264)
T cd06267 43 KEREALELLLSRRVDGIILAPSRLDDEL---L-EELAALG--IPVVLV 84 (264)
T ss_pred HHHHHHHHHHHcCcCEEEEecCCcchHH---H-HHHHHcC--CCEEEe
Confidence 4455666778889999999998876544 2 2233344 567765
No 206
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=30.75 E-value=69 Score=34.57 Aligned_cols=137 Identities=18% Similarity=0.158 Sum_probs=69.0
Q ss_pred EEecCCCCch-hhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCc-ccccccCCCCCChHH
Q 042388 94 VVLSGGQAPG-GHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGF-DMICSGRDKIETPEQ 171 (567)
Q Consensus 94 Iv~sGG~aPG-~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~-~~LGS~R~k~~~~e~ 171 (567)
|+++||-+.| ++.+ .+.+.+++..++..++|+-+ .. ++..-++. .-++..+.- .|+ ..+..- +.-..-
T Consensus 8 i~i~aGgtsGhi~pa--al~~~l~~~~~~~~~~g~gg-~~--m~~~g~~~-~~~~~~l~v-~G~~~~l~~~---~~~~~~ 77 (385)
T TIGR00215 8 IALVAGEASGDILGA--GLRQQLKEHYPNARFIGVAG-PR--MAAEGCEV-LYSMEELSV-MGLREVLGRL---GRLLKI 77 (385)
T ss_pred EEEEeCCccHHHHHH--HHHHHHHhcCCCcEEEEEcc-HH--HHhCcCcc-ccChHHhhh-ccHHHHHHHH---HHHHHH
Confidence 3444555544 5555 78888887777888888643 21 21111110 001111111 232 011110 001234
Q ss_pred HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHHHHHH
Q 042388 172 FKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNV 251 (567)
Q Consensus 172 ~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~ni 251 (567)
+.++.+.+++.+.|.+|.+||-+-+-. ++...+..|+++ |++||-.+ |- .. .-+.+.++..++.+
T Consensus 78 ~~~~~~~l~~~kPd~vi~~g~~~~~~~---~a~aa~~~gip~-v~~i~P~~-wa---------w~-~~~~r~l~~~~d~v 142 (385)
T TIGR00215 78 RKEVVQLAKQAKPDLLVGIDAPDFNLT---KELKKKDPGIKI-IYYISPQV-WA---------WR-KWRAKKIEKATDFL 142 (385)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCccHH---HHHHHhhCCCCE-EEEeCCcH-hh---------cC-cchHHHHHHHHhHh
Confidence 668889999999999999998553322 223333345442 33344322 11 11 11477777777777
Q ss_pred HHHH
Q 042388 252 MTDA 255 (567)
Q Consensus 252 ~~da 255 (567)
....
T Consensus 143 ~~~~ 146 (385)
T TIGR00215 143 LAIL 146 (385)
T ss_pred hccC
Confidence 6443
No 207
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=30.10 E-value=2.9e+02 Score=34.34 Aligned_cols=96 Identities=22% Similarity=0.149 Sum_probs=54.2
Q ss_pred CCCCcEEEEEecCCC----CchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccc
Q 042388 86 ENKSLKIGVVLSGGQ----APGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICS 161 (567)
Q Consensus 86 ~~~~~~IgIv~sGG~----aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS 161 (567)
..+.+||.|+-||+. |+=.--.-..+.++|+. .|.+++.+-.-+.....+. ...+..
T Consensus 4 ~~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e--~G~~vi~v~~np~~~~~d~------~~ad~~----------- 64 (1068)
T PRK12815 4 DTDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKE--EGYQVVLVNPNPATIMTDP------APADTV----------- 64 (1068)
T ss_pred CCCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHH--cCCEEEEEeCCcchhhcCc------ccCCee-----------
Confidence 345789999999954 33233333345555543 4788888864432222111 000000
Q ss_pred cCCCCCChHHHHHHHHHHHHcCCCEEEE-ecCchhHHHHHHHHH
Q 042388 162 GRDKIETPEQFKQAEETAKKLDLDGLVV-IGGDDSNTNACLLAE 204 (567)
Q Consensus 162 ~R~k~~~~e~~~~~~~~l~~~~id~LVi-IGGddS~t~A~~Lae 204 (567)
.+ .+-..+.+.+.|++.++|+++. +||......+..|++
T Consensus 65 ---y~-ep~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~ 104 (1068)
T PRK12815 65 ---YF-EPLTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHE 104 (1068)
T ss_pred ---EE-CCCCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHh
Confidence 00 1112456777789999999985 588777766666654
No 208
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=30.08 E-value=1.1e+02 Score=33.13 Aligned_cols=38 Identities=34% Similarity=0.326 Sum_probs=31.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHH
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAEN 205 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~ 205 (567)
|...+.++++..++-+.|.+|-|||--.+++|...+-+
T Consensus 112 tv~s~~~alefak~~~fDs~vaiGGGSa~DtaKaaaL~ 149 (465)
T KOG3857|consen 112 TVGSVTAALEFAKKKNFDSFVAIGGGSAHDTAKAAALL 149 (465)
T ss_pred chhhHHHHHHHHHhcccceEEEEcCcchhhhHHHHHHh
Confidence 45568899999999999999999999888877655433
No 209
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=29.90 E-value=6.6e+02 Score=26.19 Aligned_cols=94 Identities=16% Similarity=0.184 Sum_probs=60.2
Q ss_pred CCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCC
Q 042388 88 KSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIE 167 (567)
Q Consensus 88 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~ 167 (567)
+..+||++..+-..|--+.++.|+.+.+++. +..+.- .++. .
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~--g~~l~i---------------------------------~~~~---~ 65 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAESL--GAKVFV---------------------------------QSAN---G 65 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHHc--CCEEEE---------------------------------ECCC---C
Confidence 5789999999999999999999999887542 222210 0010 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCc
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTID 223 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTID 223 (567)
++++..+.++.+...++||+|+.+.+.+.. ...+ +.+.+.+ ++||.+-..++
T Consensus 66 ~~~~~~~~i~~l~~~~vDGiIi~~~~~~~~-~~~l-~~~~~~~--iPvV~id~~~~ 117 (330)
T PRK10355 66 NEETQMSQIENMINRGVDVLVIIPYNGQVL-SNVI-KEAKQEG--IKVLAYDRMIN 117 (330)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCChhhH-HHHH-HHHHHCC--CeEEEECCCCC
Confidence 344556778888899999999998653311 1222 3333334 67887744443
No 210
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=29.75 E-value=2.4e+02 Score=31.09 Aligned_cols=101 Identities=18% Similarity=0.127 Sum_probs=60.8
Q ss_pred CCCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCC
Q 042388 86 ENKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDK 165 (567)
Q Consensus 86 ~~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k 165 (567)
+.-|+|||||||- .+.|.+-++..+- .+.|..+++-|. -.-||-.
T Consensus 132 P~~p~~I~viTs~-~gAa~~D~~~~~~----~r~p~~~~~~~~---------------------~~vQG~~--------- 176 (438)
T PRK00286 132 PFFPKRIGVITSP-TGAAIRDILTVLR----RRFPLVEVIIYP---------------------TLVQGEG--------- 176 (438)
T ss_pred CCCCCEEEEEeCC-ccHHHHHHHHHHH----hcCCCCeEEEec---------------------CcCcCcc---------
Confidence 3458999999975 4445666655544 445554444222 1123321
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhc---CCCCccEE-EecccCc
Q 042388 166 IETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRS---KDMKTRVI-GCPKTID 223 (567)
Q Consensus 166 ~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~---~g~~i~VI-gVPKTID 223 (567)
.+.++-++++.+...++|.+||+=|-||...-..+.++-.. ..++++|| ||=--+|
T Consensus 177 --A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis~IGHE~D 236 (438)
T PRK00286 177 --AAASIVAAIERANARGEDVLIVARGGGSLEDLWAFNDEAVARAIAASRIPVISAVGHETD 236 (438)
T ss_pred --HHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcHHHHHHHHcCCCCEEEeccCCCC
Confidence 34566677777776668999999999998877655444221 25677776 3444333
No 211
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=29.13 E-value=37 Score=30.57 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=26.1
Q ss_pred HHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCC
Q 042388 174 QAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGD 225 (567)
Q Consensus 174 ~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDND 225 (567)
.+.+.+.....|.+|++-||+-+..+. +.++++|.++-|++.|.....+
T Consensus 86 d~~~~~~~~~~d~ivLvSgD~Df~~~v---~~l~~~g~~V~v~~~~~~~s~~ 134 (146)
T PF01936_consen 86 DILELAYENPPDTIVLVSGDSDFAPLV---RKLRERGKRVIVVGAEDSASEA 134 (146)
T ss_dssp HHHHHG--GG-SEEEEE---GGGHHHH---HHHHHH--EEEEEE-GGGS-HH
T ss_pred HHHHHhhccCCCEEEEEECcHHHHHHH---HHHHHcCCEEEEEEeCCCCCHH
Confidence 344455455679999999998876654 4455678888888865544433
No 212
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=28.80 E-value=5.4e+02 Score=24.86 Aligned_cols=86 Identities=15% Similarity=0.117 Sum_probs=51.3
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChH
Q 042388 91 KIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPE 170 (567)
Q Consensus 91 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e 170 (567)
.||||+.--..|-...++.|+-+.++.. +..+ + +..+. .+++
T Consensus 1 ~I~vv~~~~~~~~~~~~~~~i~~~~~~~--g~~v---------------~------------------~~~~~---~~~~ 42 (268)
T cd06323 1 TIGLSVSTLNNPFFVTLKDGAQKEAKEL--GYEL---------------T------------------VLDAQ---NDAA 42 (268)
T ss_pred CeeEecccccCHHHHHHHHHHHHHHHHc--CceE---------------E------------------ecCCC---CCHH
Confidence 3788887778889999999998887641 1111 0 00110 1344
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
...++++.+...++||+++.+- ++......|.+ +.+. +++||.+
T Consensus 43 ~~~~~~~~~~~~~~dgii~~~~-~~~~~~~~l~~-l~~~--~ipvv~~ 86 (268)
T cd06323 43 KQLNDIEDLITRGVDAIIINPT-DSDAVVPAVKA-ANEA--GIPVFTI 86 (268)
T ss_pred HHHHHHHHHHHcCCCEEEEcCC-ChHHHHHHHHH-HHHC--CCcEEEE
Confidence 4557777788889999998653 33222223333 3333 4667766
No 213
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=28.26 E-value=4e+02 Score=24.65 Aligned_cols=115 Identities=18% Similarity=0.117 Sum_probs=63.9
Q ss_pred CcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccc-cccccccCCcccccccCCCCC
Q 042388 89 SLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEY-IYPYRNQGGFDMICSGRDKIE 167 (567)
Q Consensus 89 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~-v~~~~n~GG~~~LGS~R~k~~ 167 (567)
+.+|-+-+.||+.=....-+.... ++ ..|.+|+-. | ..++.++ ++..... ..++++-|-..-.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~--lr--~~G~eVi~L--G---------~~vp~e~i~~~a~~~-~~d~V~lS~~~~~ 66 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRA--LT--EAGFEVINL--G---------VMTSQEEFIDAAIET-DADAILVSSLYGH 66 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHH--HH--HCCCEEEEC--C---------CCCCHHHHHHHHHHc-CCCEEEEcCcccc
Confidence 456777777777655444333332 21 356665521 2 1233332 3333333 3356665543335
Q ss_pred ChHHHHHHHHHHHHcCC-CEEEEecCchhHH--HHHHHHHHHhcCCCCccEEEeccc
Q 042388 168 TPEQFKQAEETAKKLDL-DGLVVIGGDDSNT--NACLLAENFRSKDMKTRVIGCPKT 221 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~i-d~LViIGGddS~t--~A~~Lae~~~~~g~~i~VIgVPKT 221 (567)
+...+...++.|++.++ +-.|++||.-+.. ......+.+++.|+ ..|.-|.|
T Consensus 67 ~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~--~~vf~~~~ 121 (137)
T PRK02261 67 GEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGF--DRVFPPGT 121 (137)
T ss_pred CHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCC--CEEECcCC
Confidence 67788999999999977 6678999976432 13334455666664 45555543
No 214
>PLN02735 carbamoyl-phosphate synthase
Probab=28.16 E-value=2.7e+02 Score=34.74 Aligned_cols=107 Identities=25% Similarity=0.283 Sum_probs=59.4
Q ss_pred cCCCCCcEEEEEecCCCCch--------hhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCC
Q 042388 84 SMENKSLKIGVVLSGGQAPG--------GHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGG 155 (567)
Q Consensus 84 ~~~~~~~~IgIv~sGG~aPG--------~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG 155 (567)
.+..+.+||.|+-||...-| +..++.++ +. .|.+|+.+-.-+..+..+ ....+.+.
T Consensus 18 ~~~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaL----ke--~G~~Vi~vd~np~t~~~~------~~~aD~~y---- 81 (1102)
T PLN02735 18 GKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKAL----KE--EGYEVVLINSNPATIMTD------PETADRTY---- 81 (1102)
T ss_pred CcccCCCEEEEECCCccccccceeecchHHHHHHHH----HH--cCCEEEEEeCCcccccCC------hhhCcEEE----
Confidence 34556789999999975444 44555544 32 477888775433211111 00111110
Q ss_pred cccccccCCCCCChHHHHHHHHHHHHcCCCEEEE-ecCchhHHHHHHHHH--HHhcCCCCccEEEec
Q 042388 156 FDMICSGRDKIETPEQFKQAEETAKKLDLDGLVV-IGGDDSNTNACLLAE--NFRSKDMKTRVIGCP 219 (567)
Q Consensus 156 ~~~LGS~R~k~~~~e~~~~~~~~l~~~~id~LVi-IGGddS~t~A~~Lae--~~~~~g~~i~VIgVP 219 (567)
+ .+.+. +.+.+.|++.++|+++. +||+-....|..|++ .+.+.| ++++|.+
T Consensus 82 ---i-----~p~~~---e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~G--I~~~G~~ 135 (1102)
T PLN02735 82 ---I-----APMTP---ELVEQVIAKERPDALLPTMGGQTALNLAVALAESGILEKYG--VELIGAK 135 (1102)
T ss_pred ---e-----CCCCH---HHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCHHHHCC--CEEECCC
Confidence 0 01122 34667789999999995 588877777776763 233333 4555543
No 215
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=28.10 E-value=6.4e+02 Score=25.46 Aligned_cols=122 Identities=12% Similarity=0.004 Sum_probs=72.3
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKI 166 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~ 166 (567)
++..+||+| .|.+.|.++.-+.|..+.++..+|+.+++... .|. +
T Consensus 118 t~t~kVG~I-~g~~~~~~~~~~~gF~~G~~~~~p~~~v~~~~------------------------~g~----------~ 162 (258)
T cd06353 118 TKTNKVGYV-AAFPIPEVVRGINAFALGARSVNPDATVKVIW------------------------TGS----------W 162 (258)
T ss_pred hcCCcEEEE-cCcccHHHHHHHHHHHHHHHHHCCCcEEEEEE------------------------ecC----------C
Confidence 344688888 46678888888888888887777776654321 111 1
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHH
Q 042388 167 ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSE 246 (567)
Q Consensus 167 ~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae 246 (567)
.+++.-.++.+.+...+.|.++-.++. ..+.. ..+++| +.+||+-.--+.+.+..- -.|+++-+..
T Consensus 163 ~D~~~a~~~a~~l~~~G~DvI~~~~~~---~g~~~---aa~~~g--~~~IG~d~dq~~~~~~~v------ltS~v~~~~~ 228 (258)
T cd06353 163 FDPAKEKEAALALIDQGADVIYQHTDS---PGVIQ---AAEEKG--VYAIGYVSDMSKFAPKAV------LTSAVWNWGP 228 (258)
T ss_pred CCcHHHHHHHHHHHHCCCcEEEecCCC---hHHHH---HHHHhC--CEEEeeccchhhhCCCCE------EEEEeeehHH
Confidence 234445667777778899988877621 22222 222344 579998643333333221 2345666666
Q ss_pred HHHHHHHHHhh
Q 042388 247 MIGNVMTDARS 257 (567)
Q Consensus 247 ~I~ni~~da~S 257 (567)
.+.++..++..
T Consensus 229 ~~~~~~~~~~~ 239 (258)
T cd06353 229 YYVAAVKAVLD 239 (258)
T ss_pred HHHHHHHHHHc
Confidence 66666555544
No 216
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=27.95 E-value=1.1e+02 Score=27.85 Aligned_cols=50 Identities=24% Similarity=0.318 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCC
Q 042388 173 KQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGD 225 (567)
Q Consensus 173 ~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDND 225 (567)
-.+++.....++|.+|++.||+-+..+. +.++++|..+-|++.+.....+
T Consensus 89 ~d~~~~~~~~~~d~ivLvSgD~Df~~~i---~~lr~~G~~V~v~~~~~~~s~~ 138 (149)
T cd06167 89 IDALELAYKRRIDTIVLVSGDSDFVPLV---ERLRELGKRVIVVGFEAKTSRE 138 (149)
T ss_pred HHHHHHhhhcCCCEEEEEECCccHHHHH---HHHHHcCCEEEEEccCccChHH
Confidence 4556666777999999999999777664 4455578888888877333333
No 217
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=27.93 E-value=4.6e+02 Score=24.65 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCC
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKE 230 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ 230 (567)
++++++++++.+.+- +-++++|--.|...|..++..|...|. .+..++-....++...|
T Consensus 16 ~~~~~~~~~~~l~~a--~~I~i~G~G~S~~~A~~~~~~l~~~g~--~~~~~~~~~~~~~~~~D 74 (179)
T TIGR03127 16 DEEELDKLADKIIKA--KRIFVAGAGRSGLVGKAFAMRLMHLGF--NVYVVGETTTPSIKKGD 74 (179)
T ss_pred CHHHHHHHHHHHHhC--CEEEEEecCHHHHHHHHHHHHHHhCCC--eEEEeCCcccCCCCCCC
Confidence 678899999998765 578888877888777777777766554 45555444444443333
No 218
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=27.80 E-value=4.3e+02 Score=26.48 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=24.1
Q ss_pred CCEEEEecC---chhHHHHHHHHHHHhcCCCCccEEEecccCcC
Q 042388 184 LDGLVVIGG---DDSNTNACLLAENFRSKDMKTRVIGCPKTIDG 224 (567)
Q Consensus 184 id~LViIGG---ddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDN 224 (567)
=+++|+++. .||+.+|..-.+ .| -+|..+|..|++
T Consensus 156 s~~vivve~~~~sGtl~ta~~A~~----~g--r~v~~~pg~~~~ 193 (220)
T TIGR00732 156 SRAVLVVEAPLKSGALITARYALE----QG--REVFAYPGDLNS 193 (220)
T ss_pred cCEEEEEECCCCCchHHHHHHHHH----hC--CcEEEEcCCCCC
Confidence 478888887 466666554433 34 479999998875
No 219
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=27.14 E-value=2.5e+02 Score=27.73 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
...+.++.+.+ ++|+++++..+.+... ..+ +.+.+.+ ++||.+
T Consensus 47 ~~~~~i~~~~~-~vdgiii~~~~~~~~~-~~i-~~~~~~~--ipvV~~ 89 (275)
T cd06307 47 ALAAALLRLGA-RSDGVALVAPDHPQVR-AAV-ARLAAAG--VPVVTL 89 (275)
T ss_pred HHHHHHHHHHh-cCCEEEEeCCCcHHHH-HHH-HHHHHCC--CcEEEE
Confidence 34566677778 9999999987643211 123 3344444 466643
No 220
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=27.07 E-value=92 Score=32.14 Aligned_cols=91 Identities=16% Similarity=0.297 Sum_probs=55.5
Q ss_pred EEEEEeCCcccccCCCEEEcCccccccccccCCccccc--ccCCCCCChHHHHHHHHHHHHcCCCEEEEecCchhH----
Q 042388 123 KLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMIC--SGRDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSN---- 196 (567)
Q Consensus 123 ~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LG--S~R~k~~~~e~~~~~~~~l~~~~id~LViIGGddS~---- 196 (567)
..+-+-+|..|-.... |-+....+++.-|.+.+- |+|.+ +..+++..+..+..++|+.+++++||-+.
T Consensus 30 d~isvT~~~~~~~~~~----t~~~a~~l~~~~g~~~i~Hlt~r~~--n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~ 103 (272)
T TIGR00676 30 DFVSVTYGAGGSTRDR----TVRIVRRIKKETGIPTVPHLTCIGA--TREEIREILREYRELGIRHILALRGDPPKGEGT 103 (272)
T ss_pred CEEEeccCCCCCcHHH----HHHHHHHHHHhcCCCeeEEeeecCC--CHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCC
Confidence 4455566665532221 222233444443444333 56663 67889999999999999999999999872
Q ss_pred ------HHHHHHHHHHhcC--CCCccEEEec
Q 042388 197 ------TNACLLAENFRSK--DMKTRVIGCP 219 (567)
Q Consensus 197 ------t~A~~Lae~~~~~--g~~i~VIgVP 219 (567)
..|..|-+..++. .+.+-+.+.|
T Consensus 104 ~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~P 134 (272)
T TIGR00676 104 PTPGGFNYASELVEFIRNEFGDFDIGVAAYP 134 (272)
T ss_pred CCCCCCCCHHHHHHHHHHhcCCeeEEEEeCC
Confidence 2366666666554 3344455555
No 221
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.71 E-value=5.9e+02 Score=24.98 Aligned_cols=87 Identities=21% Similarity=0.135 Sum_probs=52.3
Q ss_pred EEEEEecCC-CCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCCh
Q 042388 91 KIGVVLSGG-QAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETP 169 (567)
Q Consensus 91 ~IgIv~sGG-~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~ 169 (567)
+||+++..- ..|-...++.|+-++++.. +..+. + ..+ .. .++
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~~--g~~v~----------------~----------------~~~-~~--~~~ 43 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDL--GVDVE----------------Y----------------RGP-ET--FDV 43 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHHh--CCEEE----------------E----------------ECC-CC--CCH
Confidence 578888766 6788888888888886542 11111 0 001 11 134
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 170 EQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 170 e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
++....++.+...++|++|+.+.+..... ..+ +.+.++| ++||.+
T Consensus 44 ~~~~~~i~~l~~~~vdgiii~~~~~~~~~-~~l-~~~~~~~--ipvV~~ 88 (271)
T cd06312 44 ADMARLIEAAIAAKPDGIVVTIPDPDALD-PAI-KRAVAAG--IPVISF 88 (271)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCChHHhH-HHH-HHHHHCC--CeEEEe
Confidence 55667788888899999999987643211 223 3334445 567665
No 222
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=26.69 E-value=8.3e+02 Score=26.93 Aligned_cols=127 Identities=13% Similarity=0.102 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHc---CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCC---CCCChHhHHHH
Q 042388 170 EQFKQAEETAKKL---DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVP---TSFGFDTACKI 243 (567)
Q Consensus 170 e~~~~~~~~l~~~---~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie---~S~GFdTA~k~ 243 (567)
+-+.++......+ ++..+-|-|-+|-=|++..|+.-+.+.|. .++...|+.|.+.+..++ +|+.--|..+.
T Consensus 78 ~al~~la~~~~~~~~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~---~~~~~gn~~~~i~~~~~~~~~~t~~~~~~~~~ 154 (460)
T PRK00139 78 KALALLAAAFYGHPSDKLKLIGVTGTNGKTTTAYLLAQILRLLGE---KTALIGTLGNGIGGELIPSGLTTPDALDLQRL 154 (460)
T ss_pred HHHHHHHHHHhcChhhccEEEEEECCCCchhHHHHHHHHHHHcCC---CEEEECCcccccCCeecccCCCCcCHHHHHHH
Confidence 3445555544433 66778888888988899999988887774 566777777766543321 12222122221
Q ss_pred HHHHHHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEEC----CcchhhhcchHhHHHHHHHH
Q 042388 244 FSEMIGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIG----EEVAAKKQTLKNVTDYITDI 311 (567)
Q Consensus 244 ~ae~I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIp----Ee~~~~~~tL~~iv~~i~d~ 311 (567)
.. ......-.|.++|+ |+..+....-. .+.|++.+|- +....- -|++++.+.=+..
T Consensus 155 l~--------~~~~~~~~~~VlE~-~s~~~~~~~l~--~~~p~iaViTnI~~dHl~~~-gt~e~i~~~K~~i 214 (460)
T PRK00139 155 LA--------ELVDAGVTYAAMEV-SSHALDQGRVD--GLKFDVAVFTNLSRDHLDYH-GTMEDYLAAKARL 214 (460)
T ss_pred HH--------HHHHCCCCEEEEEc-chhhHhhchhc--CCcCCEEEEcCCCcccCCcC-CCHHHHHHHHHHH
Confidence 11 11112223789997 53222221111 3689998873 333222 2666665543333
No 223
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=26.68 E-value=9.3e+02 Score=26.87 Aligned_cols=140 Identities=16% Similarity=0.288 Sum_probs=92.5
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCCh
Q 042388 90 LKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETP 169 (567)
Q Consensus 90 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~ 169 (567)
..+||.-. ||-=-+||.+.++..+. .+.-| .++-|.+.|+.+ ||. |+ .|+
T Consensus 11 ~~~gI~sV---Csahp~VieAAl~~a~~--~~~pv--------------LiEAT~NQVnq~---GGY----TG----mtP 60 (420)
T TIGR02810 11 EPRGIYSV---CSAHPLVLEAAIRRARA--SGTPV--------------LIEATSNQVNQF---GGY----TG----MTP 60 (420)
T ss_pred CCCeEEEE---CCCCHHHHHHHHHHHhh--cCCcE--------------EEEecccccccc---CCc----CC----CCH
Confidence 45577664 44445899998877543 33332 478899999888 774 22 256
Q ss_pred HHHH-HHHHHHHHcCCCE-EEEecCch-------------hHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCC
Q 042388 170 EQFK-QAEETAKKLDLDG-LVVIGGDD-------------SNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTS 234 (567)
Q Consensus 170 e~~~-~~~~~l~~~~id~-LViIGGdd-------------S~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S 234 (567)
.+|. -+.+..++.+++. .+|+|||- .|..|..|.+...+.|+. -|++=.|++ .. +....
T Consensus 61 ~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~--ca--~d~~~ 134 (420)
T TIGR02810 61 ADFRDFVETIADRIGFPRDRLILGGDHLGPNPWQHLPADEAMAKAAALVDAYVEAGFT--KIHLDASMG--CA--GDPAP 134 (420)
T ss_pred HHHHHHHHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC--cc--CCCcc
Confidence 6664 4556678899998 99999973 456666666666667874 788877777 22 22247
Q ss_pred CChHhHHHHHHHHHHHHHHHHh---hcCCeeEEE
Q 042388 235 FGFDTACKIFSEMIGNVMTDAR---STGKYYHFV 265 (567)
Q Consensus 235 ~GFdTA~k~~ae~I~ni~~da~---S~~k~~~fV 265 (567)
+.=++.++..++++.-.-..+. ....-+|+|
T Consensus 135 L~d~~vAeRaa~L~~~aE~~~~~~~~~~~~vYvI 168 (420)
T TIGR02810 135 LDDATVAERAARLCAVAEAAATDRRGETKPVYVI 168 (420)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEe
Confidence 7888899999988885544433 222335676
No 224
>PLN02335 anthranilate synthase
Probab=26.31 E-value=80 Score=31.62 Aligned_cols=50 Identities=12% Similarity=0.257 Sum_probs=34.3
Q ss_pred HHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHH
Q 042388 180 KKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIF 244 (567)
Q Consensus 180 ~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ 244 (567)
..++.|++|+-||-++.......-+..++.+-+++|.|| |+||.-.+..+
T Consensus 59 ~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~PiLGI---------------ClG~QlLa~al 108 (222)
T PLN02335 59 KRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGV---------------CMGLQCIGEAF 108 (222)
T ss_pred HhcCCCEEEEcCCCCChhhccchHHHHHHhCCCCCEEEe---------------cHHHHHHHHHh
Confidence 346889999999999887644333444444545777773 99999655533
No 225
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=26.26 E-value=6.9e+02 Score=25.27 Aligned_cols=70 Identities=20% Similarity=0.326 Sum_probs=46.4
Q ss_pred CCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCC
Q 042388 88 KSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIE 167 (567)
Q Consensus 88 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~ 167 (567)
+...||||+..-..|-...++.|+-+.+.+ .|.+++-+ .+.+
T Consensus 55 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~--~g~~~~~~------------------------~~~~------------ 96 (327)
T PRK10423 55 QTRTIGMLITASTNPFYSELVRGVERSCFE--RGYSLVLC------------------------NTEG------------ 96 (327)
T ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHHHHHH--cCCEEEEE------------------------eCCC------------
Confidence 457899999776778888888998888653 22221100 0111
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchh
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDS 195 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS 195 (567)
+++...+.++.+...++||+|+.+.+.+
T Consensus 97 ~~~~~~~~~~~l~~~~vdGiI~~~~~~~ 124 (327)
T PRK10423 97 DEQRMNRNLETLMQKRVDGLLLLCTETH 124 (327)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 1233456777788899999999987643
No 226
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=26.13 E-value=5.9e+02 Score=24.39 Aligned_cols=86 Identities=17% Similarity=0.159 Sum_probs=51.6
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChH
Q 042388 91 KIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPE 170 (567)
Q Consensus 91 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e 170 (567)
+||+|......|....++.|+-+++... |+. ++- ....+ +++
T Consensus 1 ~ig~i~p~~~~~~~~~~~~~~~~~a~~~-----------g~~------~~~---------~~~~~------------~~~ 42 (267)
T cd01536 1 KIGLVVPSLNNPFWQAMNKGAEAAAKEL-----------GVE------LIV---------LDAQN------------DVS 42 (267)
T ss_pred CEEEEeccccCHHHHHHHHHHHHHHHhc-----------Cce------EEE---------ECCCC------------CHH
Confidence 5899998878899999999998876531 110 100 00001 234
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
...++++.+...++|++|+.+.+..... ..+ +++.+.+ +++|.+
T Consensus 43 ~~~~~~~~l~~~~vdgvi~~~~~~~~~~-~~~-~~l~~~~--ip~V~~ 86 (267)
T cd01536 43 KQIQQIEDLIAQGVDGIIISPVDSAALT-PAL-KKANAAG--IPVVTV 86 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCchhHH-HHH-HHHHHCC--CcEEEe
Confidence 4456777777779999999876543221 122 3333334 567765
No 227
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=26.07 E-value=1.7e+02 Score=26.93 Aligned_cols=48 Identities=17% Similarity=0.029 Sum_probs=23.5
Q ss_pred cccccccCCcccccccCCCCCChHHHHHHHHHHHHcCC-CEEEEecCchh
Q 042388 147 IYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDL-DGLVVIGGDDS 195 (567)
Q Consensus 147 v~~~~n~GG~~~LGS~R~k~~~~e~~~~~~~~l~~~~i-d~LViIGGddS 195 (567)
++.....+. ++++=|-..-.+.+.+..+++.|++.+. +-.|++||.=.
T Consensus 46 v~aa~e~~a-dii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~ 94 (132)
T TIGR00640 46 ARQAVEADV-HVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIP 94 (132)
T ss_pred HHHHHHcCC-CEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 444444433 4555433322344555666666666555 44555665443
No 228
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=26.05 E-value=4.6e+02 Score=27.69 Aligned_cols=44 Identities=27% Similarity=0.231 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEE
Q 042388 172 FKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVI 216 (567)
Q Consensus 172 ~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VI 216 (567)
...+++..++.+++.|+..||-.+|...+ ||-+.+..|+++.|+
T Consensus 55 ~~~~l~~a~~~G~~~vvs~G~s~GN~g~a-lA~aa~~~G~~~~iv 98 (337)
T PRK12390 55 LEYLVPDALAQGADTLVSIGGVQSNHTRQ-VAAVAAHLGMKCVLV 98 (337)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccHHHHH-HHHHHHHcCCeEEEE
Confidence 45666667789999999999888887654 666778889886554
No 229
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=25.96 E-value=1.1e+02 Score=33.51 Aligned_cols=109 Identities=19% Similarity=0.209 Sum_probs=69.9
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEe------CCcccccCCCEEEcCccccccccccCCcccccccC
Q 042388 90 LKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFK------GGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGR 163 (567)
Q Consensus 90 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~------~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R 163 (567)
++|+|+. |.++| +..-.++++.+++.+++.+.+|+- .|.+-|+ +++.+.-+|=+..|+.=
T Consensus 2 ~ki~i~A--GE~SG-DllGa~LikaLk~~~~~~efvGvgG~~m~aeG~~sl~----------~~~elsvmGf~EVL~~l- 67 (381)
T COG0763 2 LKIALSA--GEASG-DLLGAGLIKALKARYPDVEFVGVGGEKMEAEGLESLF----------DMEELSVMGFVEVLGRL- 67 (381)
T ss_pred ceEEEEe--cccch-hhHHHHHHHHHHhhCCCeEEEEeccHHHHhccCcccc----------CHHHHHHhhHHHHHHHH-
Confidence 4666654 44444 456678999999999999999886 3332222 23333334322223211
Q ss_pred CCCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEE
Q 042388 164 DKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIG 217 (567)
Q Consensus 164 ~k~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIg 217 (567)
+.--.-+++.++++.+.+.|.||.| ||..--..+++.+++.+.++++|+
T Consensus 68 --p~llk~~~~~~~~i~~~kpD~~i~I---DsPdFnl~vak~lrk~~p~i~iih 116 (381)
T COG0763 68 --PRLLKIRRELVRYILANKPDVLILI---DSPDFNLRVAKKLRKAGPKIKIIH 116 (381)
T ss_pred --HHHHHHHHHHHHHHHhcCCCEEEEe---CCCCCchHHHHHHHHhCCCCCeEE
Confidence 1112346777888889999999998 444455677888888998888886
No 230
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics]
Probab=25.82 E-value=1.1e+02 Score=33.52 Aligned_cols=70 Identities=19% Similarity=0.164 Sum_probs=54.4
Q ss_pred CcccccccCCC-C-CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCC
Q 042388 155 GFDMICSGRDK-I-ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEV 231 (567)
Q Consensus 155 G~~~LGS~R~k-~-~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~i 231 (567)
|.|-|+--|-. + .|...-.+|++.++++++--|++=||-=+.++.++..-| .|.| .+=..++|+|+.+++
T Consensus 261 GaDSL~gDRlgcFnLsi~Gh~~Cv~fvksfn~pllvlGGGGYT~rNVARcWtY------eT~v-~~~~~~~~elP~n~y 332 (425)
T KOG1342|consen 261 GADSLAGDRLGCFNLSIKGHAECVKFVKSFNLPLLVLGGGGYTLRNVARCWTY------ETGV-LLDQELPNELPYNDY 332 (425)
T ss_pred CCccccCCccceeeecchhHHHHHHHHHHcCCcEEEecCCccchhhhHHHHHH------Hhhh-hcCccccccCCCccc
Confidence 44666666632 2 367788999999999999999998888899999988776 3333 377899999997764
No 231
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=25.74 E-value=1.3e+02 Score=33.34 Aligned_cols=53 Identities=25% Similarity=0.275 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCc
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTID 223 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTID 223 (567)
...|.++.++.+.... |.+||.||||+.... ..--|+.++-..+|--+|.--|
T Consensus 102 ~~gqak~l~e~~~t~~-Dii~VaGGDGT~~eV--VTGi~Rrr~~~~pv~~~P~G~~ 154 (535)
T KOG4435|consen 102 NQGQAKALAEAVDTQE-DIIYVAGGDGTIGEV--VTGIFRRRKAQLPVGFYPGGYD 154 (535)
T ss_pred cHHHHHHHHHHhccCC-CeEEEecCCCcHHHh--hHHHHhcccccCceeeccCccc
Confidence 3455666666666666 999999999997664 4445666665666766665544
No 232
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=25.70 E-value=1.5e+02 Score=31.37 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=35.6
Q ss_pred ChHHHHHHHHHHHH----cCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 168 TPEQFKQAEETAKK----LDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 168 ~~e~~~~~~~~l~~----~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
+++++.++.+.+++ -+.||+||.-|-|||.-.+.+-.+..+ +.+.+||-.
T Consensus 58 t~~~w~~la~~i~~~~~~~~~dG~VVtHGTDTmeeTA~~Ls~~l~-~l~kPVVlT 111 (323)
T smart00870 58 TPADWLKLAKRINEALADDGYDGVVVTHGTDTLEETAYFLSLTLD-SLDKPVVLT 111 (323)
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEecCCccHHHHHHHHHHHhh-cCCCCEEEE
Confidence 67788888777765 479999999999999887665555443 323455543
No 233
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=25.50 E-value=5.2e+02 Score=25.85 Aligned_cols=84 Identities=14% Similarity=0.122 Sum_probs=47.6
Q ss_pred EEEEEecCCC-CchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCCh
Q 042388 91 KIGVVLSGGQ-APGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETP 169 (567)
Q Consensus 91 ~IgIv~sGG~-aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~ 169 (567)
||++|..-.+ ..|+..+++.+.+.|.+......++....+....... ...++...+ .+. ..
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~-------------~~~~~~~~~--~~~---~~ 62 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYG-------------GEQEVVRVI--VLD---NP 62 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCC-------------Ccccceeee--ecC---Cc
Confidence 5788877766 7799999999999987654444444433322111110 000111011 111 22
Q ss_pred HHHHHHHHHHHHcCCCEEEEecC
Q 042388 170 EQFKQAEETAKKLDLDGLVVIGG 192 (567)
Q Consensus 170 e~~~~~~~~l~~~~id~LViIGG 192 (567)
..+..+.+.+++.+.|.+++.-.
T Consensus 63 ~~~~~~~~~~~~~~~dii~~~~~ 85 (366)
T cd03822 63 LDYRRAARAIRLSGPDVVVIQHE 85 (366)
T ss_pred hhHHHHHHHHhhcCCCEEEEeec
Confidence 34566777888999998777543
No 234
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.43 E-value=4.6e+02 Score=25.66 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=20.9
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHH
Q 042388 91 KIGVVLSGGQAPGGHNVISGIFDYLQE 117 (567)
Q Consensus 91 ~IgIv~sGG~aPG~nnvI~gl~~~l~~ 117 (567)
+||||+..-..|=...++.|+.+.++.
T Consensus 1 ~i~vi~~~~~~~~~~~~~~~i~~~~~~ 27 (277)
T cd06319 1 QIAYIVSDLRIPFWQIMGRGVKSKAKA 27 (277)
T ss_pred CeEEEeCCCCchHHHHHHHHHHHHHHh
Confidence 578888777778888888888877653
No 235
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=25.35 E-value=6.4e+02 Score=24.56 Aligned_cols=88 Identities=13% Similarity=0.060 Sum_probs=51.7
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChH
Q 042388 91 KIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPE 170 (567)
Q Consensus 91 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e 170 (567)
+||||+..-.-|=...++.|+-+.++.. .+.++. +..+ ..+++
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~-~~~~~~---------------------------------~~~~---~~~~~ 43 (272)
T cd06301 1 KIGVSMANFDDNFLTLLRNAMKEHAKVL-GGVELQ---------------------------------FEDA---KNDVA 43 (272)
T ss_pred CeeEeecccCCHHHHHHHHHHHHHHHHc-CCcEEE---------------------------------EeCC---CCCHH
Confidence 5888887766777777778887776540 111111 0000 01345
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEec
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCP 219 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVP 219 (567)
.....++.+.+.++||+|+.+.+.+... .+.+.+.+. +++||.+-
T Consensus 44 ~~~~~i~~l~~~~vdgiii~~~~~~~~~--~~~~~l~~~--~iPvv~~~ 88 (272)
T cd06301 44 TQLSQVENFIAQGVDAIIVVPVDTAATA--PIVKAANAA--GIPLVYVN 88 (272)
T ss_pred HHHHHHHHHHHcCCCEEEEecCchhhhH--HHHHHHHHC--CCeEEEec
Confidence 5567788888999999999887643222 222333333 46787653
No 236
>PLN02327 CTP synthase
Probab=25.23 E-value=76 Score=36.43 Aligned_cols=69 Identities=25% Similarity=0.324 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHH--HHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHH
Q 042388 170 EQFKQAEETAKKLDLDGLVVIGGDDSNT--NACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEM 247 (567)
Q Consensus 170 e~~~~~~~~l~~~~id~LViIGGddS~t--~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~ 247 (567)
+.+..+-+.+ .+.|++++-||.|+-. .....++++++++ +++.|| |.|+.-++-.++.-
T Consensus 351 ~~y~~~~~~L--~~~DGIvvpGGfG~~~~~G~i~ai~~are~~--iP~LGI---------------ClGmQl~viefaRn 411 (557)
T PLN02327 351 DAYAAAWKLL--KGADGILVPGGFGDRGVEGKILAAKYARENK--VPYLGI---------------CLGMQIAVIEFARS 411 (557)
T ss_pred chhhhhHHhh--ccCCEEEeCCCCCCcccccHHHHHHHHHHcC--CCEEEE---------------cHHHHHHHHHHHHh
Confidence 3444554444 5678999999975432 2333345655444 567773 99999999999987
Q ss_pred HHHHHHHHhhc
Q 042388 248 IGNVMTDARST 258 (567)
Q Consensus 248 I~ni~~da~S~ 258 (567)
+-.+. ||.|+
T Consensus 412 vlG~~-dAnS~ 421 (557)
T PLN02327 412 VLGLK-DANST 421 (557)
T ss_pred hcCCc-CCCcc
Confidence 77774 88886
No 237
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=24.99 E-value=7.3e+02 Score=25.12 Aligned_cols=47 Identities=19% Similarity=0.123 Sum_probs=29.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
+++.....++.+...++|++|+.+.+.... ...+ +.+.+.| ++||.+
T Consensus 42 ~~~~q~~~i~~l~~~~vdgiii~~~~~~~~-~~~~-~~~~~~g--iPvV~~ 88 (303)
T cd01539 42 NQSTQNEQIDTALAKGVDLLAVNLVDPTAA-QTVI-NKAKQKN--IPVIFF 88 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCchhhH-HHHH-HHHHHCC--CCEEEe
Confidence 344556778888999999999988664321 1222 3333345 567754
No 238
>KOG2998 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.95 E-value=2.5e+02 Score=29.77 Aligned_cols=73 Identities=29% Similarity=0.301 Sum_probs=50.5
Q ss_pred chHHHHHHhhhcCCCC-CC-cccchhhhHHHHHHHHHHHHHHhhhcCCcCcccccceecCcccccCCCC--CHHHHHHHH
Q 042388 375 FPKAIQEQLLLERDPH-GN-VQVAKIETEKMLIQMVETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLP--TNFDANYCY 450 (567)
Q Consensus 375 lp~~i~~ql~~~rD~~-Gn-~~ls~i~te~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~P--S~fD~~~a~ 450 (567)
.|+..|+=|+..+-+. +. +-|.+|+...++.+|++.+-.+ .++|.++...| +.||..|||
T Consensus 186 ~~~~aq~lL~~s~~~r~eYpfAVvgINIT~m~~qmL~~eal~----------------~~~~~~~~~~~~~~~F~~lYc~ 249 (302)
T KOG2998|consen 186 YPTSAQRLLLKSRHPRWEYPFAVVGINITFMAIQMLDLEALK----------------KHFNNIVKVFETEPAFDLLYCY 249 (302)
T ss_pred hhHHHHHHHHhcCCCccCCceEEEeecHHHHHHHHHHhhhcc----------------ccccccccccccHHHHHHHHHH
Confidence 3555333333333332 33 3578999999999998876432 35566666656 569999999
Q ss_pred HHHHHHHHHHHcC
Q 042388 451 ALGYAAAALLHAG 463 (567)
Q Consensus 451 ~lG~~Av~li~~g 463 (567)
++=..+..++...
T Consensus 250 af~~~d~~Wl~~~ 262 (302)
T KOG2998|consen 250 AFLEFDKQWLEQR 262 (302)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998876
No 239
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=24.93 E-value=1.4e+02 Score=30.67 Aligned_cols=69 Identities=20% Similarity=0.188 Sum_probs=44.6
Q ss_pred CCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCC
Q 042388 88 KSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIE 167 (567)
Q Consensus 88 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~ 167 (567)
+..+|||++..-..|-...++.|+-+.+.. .+..++-+ ++. .
T Consensus 59 ~~~~Igvi~~~~~~~~~~~~~~~i~~~~~~--~gy~~~i~------------------------~~~------------~ 100 (327)
T TIGR02417 59 RSRTIGLVIPDLENYSYARIAKELEQQCRE--AGYQLLIA------------------------CSD------------D 100 (327)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHH--CCCEEEEE------------------------eCC------------C
Confidence 347899999776677778888888877543 22222100 010 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCch
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDD 194 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGdd 194 (567)
+++...+.++.+...++||+|+.+.+.
T Consensus 101 ~~~~~~~~~~~l~~~~vdgiIi~~~~~ 127 (327)
T TIGR02417 101 NPDQEKVVIENLLARQVDALIVASCMP 127 (327)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 233445677888899999999988654
No 240
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=24.64 E-value=4.1e+02 Score=26.81 Aligned_cols=87 Identities=14% Similarity=0.113 Sum_probs=49.3
Q ss_pred EEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChHH
Q 042388 92 IGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPEQ 171 (567)
Q Consensus 92 IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e~ 171 (567)
||+|+..-.-|-...++.|+.+.++.... ..+ + +.+.++. +.+.
T Consensus 1 Igvi~~~~~~~f~~~~~~gi~~~a~~~g~-~~~---------------i-----------------~~~~~~~---d~~~ 44 (302)
T TIGR02637 1 IGLVVKSLGNPFFEAANKGAEEAAKELGS-VYI---------------I-----------------YTGPTGT---TAEG 44 (302)
T ss_pred CEEEeccCCCHHHHHHHHHHHHHHHHhCC-eeE---------------E-----------------EECCCCC---CHHH
Confidence 57777776778888888888887654210 000 0 0000110 2334
Q ss_pred HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 172 FKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 172 ~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
....++.+...++|++|+.+-+.+ .....+ +.+.+.| ++||.+
T Consensus 45 q~~~i~~l~~~~vdgiIi~~~~~~-~~~~~l-~~~~~~g--iPvV~~ 87 (302)
T TIGR02637 45 QIEVVNSLIAQKVDAIAISANDPD-ALVPAL-KKAMKRG--IKVVTW 87 (302)
T ss_pred HHHHHHHHHHcCCCEEEEeCCChH-HHHHHH-HHHHHCC--CEEEEe
Confidence 456788888999999999876422 111222 3344444 567754
No 241
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=24.39 E-value=7.4e+02 Score=24.96 Aligned_cols=87 Identities=16% Similarity=0.100 Sum_probs=52.9
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChH
Q 042388 91 KIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPE 170 (567)
Q Consensus 91 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e 170 (567)
+||||...-..|--..++.|+-+.+++. +.++.-+ +.+. .+++
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~~--g~~v~~~--------------------------------~~~~---~d~~ 43 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKEL--GVDAIYV--------------------------------GPTT---ADAA 43 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHHh--CCeEEEE--------------------------------CCCC---CCHH
Confidence 5888887767888999999998887642 2222100 1111 1334
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
+..+.++.+...++|++|+.+.+.+... ..+ +.+.+.+ ++||.+
T Consensus 44 ~~~~~i~~~~~~~~DgiIi~~~~~~~~~-~~~-~~~~~~~--iPvV~v 87 (298)
T cd06302 44 GQVQIIEDLIAQGVDAIAVVPNDPDALE-PVL-KKAREAG--IKVVTH 87 (298)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCHHHHH-HHH-HHHHHCC--CeEEEE
Confidence 5567777888889999999976643211 122 3334444 556655
No 242
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.31 E-value=2.7e+02 Score=27.27 Aligned_cols=88 Identities=14% Similarity=0.069 Sum_probs=53.9
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChH
Q 042388 91 KIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPE 170 (567)
Q Consensus 91 ~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e 170 (567)
.||||+..-..|-...++.|+-+.++. .|..+.-+ ++. .+++
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~--~g~~~~~~------------------------~~~------------~~~~ 42 (273)
T cd06292 1 LVGLLVPELSNPIFPAFAEAIEAALAQ--YGYTVLLC------------------------NTY------------RGGV 42 (273)
T ss_pred CEEEEeCCCcCchHHHHHHHHHHHHHH--CCCEEEEE------------------------eCC------------CChH
Confidence 378999888888888899999888654 22222100 000 1234
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchh-H-HHHHHHHHHHhcCCCCccEEEec
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDDS-N-TNACLLAENFRSKDMKTRVIGCP 219 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGddS-~-t~A~~Lae~~~~~g~~i~VIgVP 219 (567)
...+.++.+...++||+++.+..-. . ..+..+ +.+.+++ ++||.+=
T Consensus 43 ~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i-~~~~~~~--ipvV~i~ 90 (273)
T cd06292 43 SEADYVEDLLARGVRGVVFISSLHADTHADHSHY-ERLAERG--LPVVLVN 90 (273)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCcccchhHHH-HHHHhCC--CCEEEEc
Confidence 4567789999999999999985422 1 122223 3334444 5677653
No 243
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=24.02 E-value=2.4e+02 Score=29.11 Aligned_cols=56 Identities=14% Similarity=0.303 Sum_probs=39.5
Q ss_pred CeeEEEEecCCCCcHHHHHhhhh-cC---CcEEEECCcchhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEE
Q 042388 260 KYYHFVRLMGRAASHITLECALQ-TH---PNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVILI 327 (567)
Q Consensus 260 k~~~fVevMGR~ag~LAL~~aLa-t~---pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli 327 (567)
+.+.++|+ ..||+...+++- ++ -.++|+|+.|... .+.|.+.|.+|. |++-+||+.
T Consensus 89 ~~~~i~~~---~~G~v~anAGID~SN~~~g~v~LLP~DPd~s-------A~~ir~~l~~~~--g~~v~VIIt 148 (243)
T TIGR01916 89 TPFLITET---RHGHVCANAGIDESNVGNGELLLLPEDPDAS-------AEKIRRGLRELT--GVDVGVIIT 148 (243)
T ss_pred CCeEEEEe---cCceEEeccccccccCCCCeEEecCCChHHH-------HHHHHHHHHHHH--CCCEEEEEE
Confidence 44667887 788998888884 22 2478999998642 566666677664 778887765
No 244
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=23.85 E-value=1.2e+02 Score=31.26 Aligned_cols=57 Identities=12% Similarity=0.278 Sum_probs=39.7
Q ss_pred CCeeEEEEecCCCCcHHHHHhhhh-cCC---cEEEECCcchhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEE
Q 042388 259 GKYYHFVRLMGRAASHITLECALQ-THP---NITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVILI 327 (567)
Q Consensus 259 ~k~~~fVevMGR~ag~LAL~~aLa-t~p---nivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli 327 (567)
...+.++|+ .-||+...+++- ++. .++|+||.|... .+.|.+.|.+|. |++-+||+.
T Consensus 89 ~~~~~i~~~---~~G~v~anAGID~SNv~~g~~~LLP~DPd~S-------A~~ir~~l~~~~--g~~v~VIIt 149 (245)
T PRK13293 89 EAPFILTET---KHGHVCANAGIDESNVPDGDLLLLPENPDES-------AERIREGLEELT--GKKVGVIIT 149 (245)
T ss_pred eCCeEEEEe---ccceEEeccccccccCCCCeEEecCCCHHHH-------HHHHHHHHHHHH--CCCEEEEEE
Confidence 344567777 789998888874 222 488999998642 566777777775 678887664
No 245
>PRK09864 putative peptidase; Provisional
Probab=23.73 E-value=3.6e+02 Score=29.23 Aligned_cols=86 Identities=7% Similarity=0.047 Sum_probs=55.8
Q ss_pred cCCccccc-ccCCCCCChHHHHHHHHHHHHcCCCEEE-EecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCC
Q 042388 153 QGGFDMIC-SGRDKIETPEQFKQAEETAKKLDLDGLV-VIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKE 230 (567)
Q Consensus 153 ~GG~~~LG-S~R~k~~~~e~~~~~~~~l~~~~id~LV-iIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ 230 (567)
.|+-.+|. ..+.-+.++.-.+.+.+.+++++|..=+ +..|-||-..+..+ ...|+++-+|+||- -
T Consensus 247 lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~~~~~~ggTDa~~i~~----~~~Gvpt~~isiP~---------R 313 (356)
T PRK09864 247 LGQGPGLMLFDKRYFPNQKLVAALKSCAAHNDLPLQFSTMKTGATDGGRYNV----MGGGRPVVALCLPT---------R 313 (356)
T ss_pred cCCCCeEEEccCCccCCHHHHHHHHHHHHHcCCCceEEEcCCCCchHHHHHH----hCCCCcEEEEeecc---------C
Confidence 34334663 3345677888899999999999998776 45433554444433 23589999999994 2
Q ss_pred CCCCCC-------hHhHHHHHHHHHHHH
Q 042388 231 VPTSFG-------FDTACKIFSEMIGNV 251 (567)
Q Consensus 231 ie~S~G-------FdTA~k~~ae~I~ni 251 (567)
+-||+- ++.+++.+.+.+.++
T Consensus 314 Y~Hs~~e~~~~~D~e~~~~Ll~~~~~~l 341 (356)
T PRK09864 314 YLHANSGMISKADYDALLTLIRDFLTTL 341 (356)
T ss_pred cCCCcceEeEHHHHHHHHHHHHHHHHhc
Confidence 223332 566777777777665
No 246
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=23.63 E-value=1.5e+02 Score=31.54 Aligned_cols=49 Identities=20% Similarity=0.313 Sum_probs=35.1
Q ss_pred ChHHHHHHHHHHHHc--CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 168 TPEQFKQAEETAKKL--DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~--~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.++.+.+ .+||-.
T Consensus 61 t~~~w~~l~~~I~~~~~~~dGiVVtHGTDTmeeTA~~L~~~l~~~--kPVVlT 111 (323)
T cd00411 61 TDEDWLKIAKDINELYDSYDGFVITHGTDTMEETAYFLSLTLEND--KPVVLT 111 (323)
T ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEcCcccHHHHHHHHHHHhcCC--CCEEEE
Confidence 677777777776554 6999999999999988776555555443 355543
No 247
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=23.63 E-value=1.9e+02 Score=27.20 Aligned_cols=48 Identities=17% Similarity=0.254 Sum_probs=28.6
Q ss_pred EEEecCchhHHH--HHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHH
Q 042388 187 LVVIGGDDSNTN--ACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTAC 241 (567)
Q Consensus 187 LViIGGddS~t~--A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~ 241 (567)
+.++|-.||-++ +..|.+.+.++|+++.+| .+|..+.+++ ..|.||..
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~vi------K~~~~~~~~d-~~~~D~~~ 51 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATI------KHDHHDFDID-KNGKDSYR 51 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE------ecccccccCC-CccccHHH
Confidence 567786777555 477888888778765444 3443333332 34666654
No 248
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=23.10 E-value=6.6e+02 Score=25.66 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=29.0
Q ss_pred CEEEEecCchhHHHH-HHHHHHHhcCCCCccEEEeccc
Q 042388 185 DGLVVIGGDDSNTNA-CLLAENFRSKDMKTRVIGCPKT 221 (567)
Q Consensus 185 d~LViIGGddS~t~A-~~Lae~~~~~g~~i~VIgVPKT 221 (567)
+-+++.||.+..... ..|++++.++|+++.|++-|.-
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~ 39 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRG 39 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCc
Confidence 357888998876654 4899999999998888876554
No 249
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=22.95 E-value=7.8e+02 Score=25.48 Aligned_cols=93 Identities=14% Similarity=0.094 Sum_probs=54.1
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKI 166 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~ 166 (567)
.+.++||++...-.-|..+.++.|+.+.++... +..++ +..+.
T Consensus 22 ~~~~~Igvv~~~~~~~f~~~~~~gi~~~a~~~g-~~~~~---------------------------------~~~~~--- 64 (330)
T PRK15395 22 AADTRIGVTIYKYDDNFMSVVRKAIEKDAKAAP-DVQLL---------------------------------MNDSQ--- 64 (330)
T ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHHhcC-CeEEE---------------------------------EecCC---
Confidence 345789988877677888888888888765321 11110 00011
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecc
Q 042388 167 ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPK 220 (567)
Q Consensus 167 ~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPK 220 (567)
.+.+.-.+.++.+...++|++|+.+.+..... ..+ +.+++.+ ++||.+=.
T Consensus 65 ~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~l-~~l~~~g--iPvV~vd~ 114 (330)
T PRK15395 65 NDQSKQNDQIDVLLAKGVKALAINLVDPAAAP-TVI-EKARGQD--VPVVFFNK 114 (330)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccCHHHHH-HHH-HHHHHCC--CcEEEEcC
Confidence 12223335667788999999999987653332 223 3344445 55666543
No 250
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=22.92 E-value=2.3e+02 Score=28.38 Aligned_cols=53 Identities=19% Similarity=0.342 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCch--hHHHHHHHHHHHhcCCCCccEEEecccCcC
Q 042388 170 EQFKQAEETAKKLDLDGLVVIGGDD--SNTNACLLAENFRSKDMKTRVIGCPKTIDG 224 (567)
Q Consensus 170 e~~~~~~~~l~~~~id~LViIGGdd--S~t~A~~Lae~~~~~g~~i~VIgVPKTIDN 224 (567)
++++++++.+.+.+-|+++ |||.. +..+...+.+.+++ ..+++||--|.+.+.
T Consensus 11 e~~~~ia~~v~~~gtDaI~-VGGS~gvt~~~~~~~v~~ik~-~~~lPvilfp~~~~~ 65 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIM-VGGSLGIVESNLDQTVKKIKK-ITNLPVILFPGNVNG 65 (205)
T ss_pred HHHHHHHHHHHhcCCCEEE-EcCcCCCCHHHHHHHHHHHHh-hcCCCEEEECCCccc
Confidence 6677788889999999985 56554 44555555565554 357889988876653
No 251
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=22.90 E-value=1.8e+02 Score=29.71 Aligned_cols=91 Identities=22% Similarity=0.264 Sum_probs=59.7
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCCh
Q 042388 90 LKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETP 169 (567)
Q Consensus 90 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~ 169 (567)
.+||||+.--.-|=--.++.|+-+.+++. |..++= .+++. ++
T Consensus 2 ~~IGvivp~~~npff~~ii~gIe~~a~~~--Gy~l~l------------------------~~t~~------------~~ 43 (279)
T PF00532_consen 2 KTIGVIVPDISNPFFAEIIRGIEQEAREH--GYQLLL------------------------CNTGD------------DE 43 (279)
T ss_dssp CEEEEEESSSTSHHHHHHHHHHHHHHHHT--TCEEEE------------------------EEETT------------TH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHHc--CCEEEE------------------------ecCCC------------ch
Confidence 47899988888888888888888886542 222210 11222 12
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCC
Q 042388 170 EQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGD 225 (567)
Q Consensus 170 e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDND 225 (567)
+.++.++.|.+.++||+|+.+-..+...-..+.+ . +++||.+=.+.+++
T Consensus 44 -~~e~~i~~l~~~~vDGiI~~s~~~~~~~l~~~~~---~---~iPvV~~~~~~~~~ 92 (279)
T PF00532_consen 44 -EKEEYIELLLQRRVDGIILASSENDDEELRRLIK---S---GIPVVLIDRYIDNP 92 (279)
T ss_dssp -HHHHHHHHHHHTTSSEEEEESSSCTCHHHHHHHH---T---TSEEEEESS-SCTT
T ss_pred -HHHHHHHHHHhcCCCEEEEecccCChHHHHHHHH---c---CCCEEEEEeccCCc
Confidence 2338899999999999999976665333333332 2 57899887777666
No 252
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.86 E-value=3.8e+02 Score=22.86 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=15.5
Q ss_pred HHhhcCCeeEEEEecCCCCcHHHHHhhhhc
Q 042388 254 DARSTGKYYHFVRLMGRAASHITLECALQT 283 (567)
Q Consensus 254 da~S~~k~~~fVevMGR~ag~LAL~~aLat 283 (567)
-|......+.++ |+.|+-+++.+|+.
T Consensus 70 ~akk~~ip~~~~----~~~~~~~l~~~l~~ 95 (97)
T PF10087_consen 70 AAKKYGIPIIYS----RSRGVSSLERALER 95 (97)
T ss_pred HHHHcCCcEEEE----CCCCHHHHHHHHHh
Confidence 334444444444 67888888888763
No 253
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=22.83 E-value=87 Score=30.37 Aligned_cols=53 Identities=15% Similarity=0.268 Sum_probs=35.6
Q ss_pred HHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHH
Q 042388 178 TAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFS 245 (567)
Q Consensus 178 ~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~a 245 (567)
.+++++.|+||+-||-++-..+....+.++....+++|.|| |+|+...+..+-
T Consensus 38 ~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGI---------------ClG~Q~la~a~G 90 (187)
T PRK08007 38 DIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGV---------------CLGHQAMAQAFG 90 (187)
T ss_pred HHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEE---------------CHHHHHHHHHcC
Confidence 34567899999999999887654433333222234677774 999988776653
No 254
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=22.80 E-value=1.8e+02 Score=30.53 Aligned_cols=70 Identities=14% Similarity=0.178 Sum_probs=47.9
Q ss_pred EEEcCccccccccc-cCCc-cc-ccccCCCCCChHHHHHHHHHHHHcCCCEEEEecCchh--------HHHHHHHHHHHh
Q 042388 139 YVELSTEYIYPYRN-QGGF-DM-ICSGRDKIETPEQFKQAEETAKKLDLDGLVVIGGDDS--------NTNACLLAENFR 207 (567)
Q Consensus 139 ~~eLt~~~v~~~~n-~GG~-~~-LGS~R~k~~~~e~~~~~~~~l~~~~id~LViIGGddS--------~t~A~~Lae~~~ 207 (567)
..+.|...+..+.. ++|. .+ ==|||+. +...+...++.+.+++|+.++.++||.. ...|..|-+..+
T Consensus 60 ~~~~t~~~~~~~~~~~~~~~~i~Hltc~d~--n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik 137 (291)
T COG0685 60 TPRRTSVAAAALLKRTGGIEPIPHLTCRDR--NRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIK 137 (291)
T ss_pred CCcccHHHHHHHHHhcCCCccceeecccCC--CHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHHH
Confidence 44455554554443 3454 11 1267766 6788999999999999999999999984 335666667766
Q ss_pred cCC
Q 042388 208 SKD 210 (567)
Q Consensus 208 ~~g 210 (567)
+..
T Consensus 138 ~~~ 140 (291)
T COG0685 138 KMR 140 (291)
T ss_pred Hhc
Confidence 544
No 255
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=22.74 E-value=3.3e+02 Score=26.76 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccC
Q 042388 173 KQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 222 (567)
Q Consensus 173 ~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 222 (567)
+++.+.+.+.++||+|+.+.+... ..+ +.+.+.| ++||.+-...
T Consensus 54 ~~~~~~l~~~~~dgiii~~~~~~~---~~~-~~~~~~~--ipvV~~~~~~ 97 (275)
T cd06295 54 DWLARYLASGRADGVILIGQHDQD---PLP-ERLAETG--LPFVVWGRPL 97 (275)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCh---HHH-HHHHhCC--CCEEEECCcc
Confidence 345566778899999999876442 123 3344344 5788664433
No 256
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.65 E-value=5.5e+02 Score=24.98 Aligned_cols=85 Identities=12% Similarity=0.067 Sum_probs=48.6
Q ss_pred EEEEecCC-CCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChH
Q 042388 92 IGVVLSGG-QAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPE 170 (567)
Q Consensus 92 IgIv~sGG-~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e 170 (567)
||||..-- ..|-...++.|+-+.+... |+. ++ +..++. +++
T Consensus 2 i~vi~p~~~~~~~~~~~~~g~~~~~~~~-----------g~~------~~------------------~~~~~~---~~~ 43 (275)
T cd06317 2 IGYTQNNVGSHSYQTTYNKAFQAAAEED-----------GVE------VI------------------VLDANG---DVA 43 (275)
T ss_pred eEEEecccCCCHHHHHHHHHHHHHHHhc-----------CCE------EE------------------EEcCCc---CHH
Confidence 78887654 7788888888888876531 211 00 001111 234
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
...+.++.+...++|++++.+.+.+.. ...+ +.+.+++ ++||.+
T Consensus 44 ~~~~~~~~l~~~~vdgiii~~~~~~~~-~~~l-~~~~~~~--iPvV~~ 87 (275)
T cd06317 44 RQAAQVEDLIAQKVDGIILWPTDGQAY-IPGL-RKAKQAG--IPVVIT 87 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCcccc-HHHH-HHHHHCC--CcEEEe
Confidence 445667778888999999988764321 1222 3334444 566643
No 257
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=22.65 E-value=1.2e+02 Score=26.31 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecc
Q 042388 172 FKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPK 220 (567)
Q Consensus 172 ~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPK 220 (567)
...+...+-..++.++|+.||..--.....+++.. +++|+..|.
T Consensus 50 R~di~~~a~~~~i~~iIltg~~~~~~~v~~la~~~-----~i~vi~t~~ 93 (105)
T PF07085_consen 50 REDIQLAAIEAGIACIILTGGLEPSEEVLELAKEL-----GIPVISTPY 93 (105)
T ss_dssp -HHHHHHHCCTTECEEEEETT----HHHHHHHHHH-----T-EEEE-SS
T ss_pred cHHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHC-----CCEEEEECC
Confidence 45666777788899999999999888888887763 488998884
No 258
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=22.55 E-value=8.5e+02 Score=25.33 Aligned_cols=205 Identities=15% Similarity=0.156 Sum_probs=0.0
Q ss_pred EEecCCCCc-hhhHHHHHHHHHHHHhcCCCEEEEEeC-------Cccccc-CCCEEEcCccccccccccC---Ccccccc
Q 042388 94 VVLSGGQAP-GGHNVISGIFDYLQERTNGSKLYGFKG-------GPAGIM-KCKYVELSTEYIYPYRNQG---GFDMICS 161 (567)
Q Consensus 94 Iv~sGG~aP-G~nnvI~gl~~~l~~~~~~~~v~Gf~~-------G~~GLl-~~~~~eLt~~~v~~~~n~G---G~~~LGS 161 (567)
|.+.||.-| --..-+..+++.+++..+...+.++-. --.|+. ...+..|.+.-++.+...| +++-+..
T Consensus 56 i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~ 135 (309)
T TIGR00423 56 VCIQGGLNPQLDIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRR 135 (309)
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHH
Q ss_pred cC-CCCCChHHHHHHHHHHHHcC--CCEEEEecCchhHHHHHHHHHHHhcCCCCccEE--EecccCcCCCCCCC-CCCC-
Q 042388 162 GR-DKIETPEQFKQAEETAKKLD--LDGLVVIGGDDSNTNACLLAENFRSKDMKTRVI--GCPKTIDGDLKCKE-VPTS- 234 (567)
Q Consensus 162 ~R-~k~~~~e~~~~~~~~l~~~~--id~LViIGGddS~t~A~~Lae~~~~~g~~i~VI--gVPKTIDNDL~~~~-ie~S- 234 (567)
.- .+..+.+++.++++.+++++ +.+-+++|=..|...-..+...+++.+.++.-+ .||...-. +++. .+..
T Consensus 136 ~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~iiG~~Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~f~~--~~t~~l~~~~ 213 (309)
T TIGR00423 136 KICPNKLSSDEWLEVIKTAHRLGIPTTATMMFGHVENPEHRVEHLLRIRKIQEKTGGFTEFIPLPFQP--ENNPYLEGEV 213 (309)
T ss_pred hhCCCCCCHHHHHHHHHHHHHcCCCceeeEEecCCCCHHHHHHHHHHHHhhchhhCCeeeEEeeeecC--CCChhhccCC
Q ss_pred -CChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCcHHHH-----HhhhhcCCcEE---EECCcchhh-------h
Q 042388 235 -FGFDTACKIFSEMIGNVMTDARSTGKYYHFVRLMGRAASHITL-----ECALQTHPNIT---IIGEEVAAK-------K 298 (567)
Q Consensus 235 -~GFdTA~k~~ae~I~ni~~da~S~~k~~~fVevMGR~ag~LAL-----~~aLat~pniv---lIpEe~~~~-------~ 298 (567)
...+..--.=.-++-.+..+ .-..+ .|||..+ ..+|..++|-+ +++|.+... .
T Consensus 214 ~~~~~~~e~lr~iA~~Rl~lp---~~~~i--------~a~~~~l~~~~~~~~l~~Gand~~gt~~~e~v~~~ag~~~~~~ 282 (309)
T TIGR00423 214 RKGASGIDDLKVIAISRILLN---NIRNI--------QASWVKLGLKLAQVALEFGANDLGGTLMEENISKAAGAKSGVG 282 (309)
T ss_pred CCCCCHHHHHHHHHHHHHhcC---CCccc--------eecchhcCHHHHHHHHhCCCccCCcccccceeccccCCCCCCC
Q ss_pred cchHhHHHHHHHH
Q 042388 299 QTLKNVTDYITDI 311 (567)
Q Consensus 299 ~tL~~iv~~i~d~ 311 (567)
++++++++-|.++
T Consensus 283 ~~~~~l~~~~~~~ 295 (309)
T TIGR00423 283 LTVEELIEAIKDA 295 (309)
T ss_pred CCHHHHHHHHHHc
No 259
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=22.40 E-value=1.5e+02 Score=31.08 Aligned_cols=52 Identities=21% Similarity=0.297 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCc
Q 042388 170 EQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTID 223 (567)
Q Consensus 170 e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTID 223 (567)
.+++.+++.|-+ .+|.+|||||-.|. |...|++-.++.+.++-.|-=+.=||
T Consensus 196 ~~RQ~a~~~la~-~vD~miVVGg~nSs-NT~rL~ei~~~~~~~t~~Ie~~~el~ 247 (280)
T TIGR00216 196 QNRQDAVKELAP-EVDLMIVIGGKNSS-NTTRLYEIAEEHGPPSYLIETAEELP 247 (280)
T ss_pred HHHHHHHHHHHh-hCCEEEEECCCCCc-hHHHHHHHHHHhCCCEEEECChHHCC
Confidence 446666666633 59999999999885 44678888877776555554444444
No 260
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=22.36 E-value=2.3e+02 Score=32.75 Aligned_cols=113 Identities=20% Similarity=0.228 Sum_probs=71.6
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKI 166 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~ 166 (567)
..+..|||+.|..+.-=.|.-+.-+.+.++.--...-.+.|-.+.-++.++--+ .++| | ++-+
T Consensus 40 ~~kP~IgI~~s~~d~~p~h~hl~~l~~~vk~~i~~aGg~p~ef~t~~v~DGiam-----------G~~G--M----~~SL 102 (575)
T COG0129 40 FGKPIIGIANSYNDMVPGHQHLKDLAQLVKEGIREAGGVPVEFGTIAVCDGIAM-----------GHDG--M----PYSL 102 (575)
T ss_pred cCCCeEEEEeccccCcCchhhHHHHHHHHHHHHHHcCCceeEeCCCCccCcccc-----------CCCC--c----cccc
Confidence 356799999999998888887776666654432222234444444444433211 1122 2 1233
Q ss_pred CChHHHHH-HHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecc
Q 042388 167 ETPEQFKQ-AEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPK 220 (567)
Q Consensus 167 ~~~e~~~~-~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPK 220 (567)
.+.|-+.. +...+..+-+|++|.|||.|-.+-+...+-. -.+++.|.||.
T Consensus 103 ~SRelIAds~e~~~~~~~~Da~V~i~~CDKi~PG~lmaa~----r~niPaIfv~g 153 (575)
T COG0129 103 PSRELIADSVEEVLSAHPFDGVVLIGGCDKITPGMLMAAA----RLNIPAIFVSG 153 (575)
T ss_pred ccHHHHHHHHHHHHhccCcceEEEecCCCCccHHHHHHHH----hcCCCEEEecC
Confidence 35555444 4556677889999999999999999988832 23678888884
No 261
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=22.14 E-value=3.1e+02 Score=28.62 Aligned_cols=121 Identities=10% Similarity=0.005 Sum_probs=57.7
Q ss_pred ChhHHHhhCCcccCCCeeEEecCCcccccCCCCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCccccc
Q 042388 56 NPEEIKKLFPKLFGQPSARLVECDPKACSMENKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIM 135 (567)
Q Consensus 56 ~~~~i~~~fp~~~~~p~~~~~~~~~~~~~~~~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl 135 (567)
+.+++++.|..+...--+.+.- ....+++||+|+.||+ -.- +.+++++.+...-+.+|.++.--..
T Consensus 62 ~~~~L~~~L~~l~~~l~l~i~l------~~~~~~~ri~vl~Sg~-gsn----l~al~~~~~~~~~~~~i~~visn~~--- 127 (286)
T PRK06027 62 NLETLRADFAALAEEFEMDWRL------LDSAERKRVVILVSKE-DHC----LGDLLWRWRSGELPVEIAAVISNHD--- 127 (286)
T ss_pred CHHHHHHHHHHHHHHhCCEEEE------cccccCcEEEEEEcCC-CCC----HHHHHHHHHcCCCCcEEEEEEEcCh---
Confidence 3667777776665543322221 1234678999999999 222 3445555433222455555442111
Q ss_pred CCCEEEcCccccccccccCCcccccccCCCCCChHHHH-HHHHHHHHcCCCEEEEecCchhHHHHHHH
Q 042388 136 KCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPEQFK-QAEETAKKLDLDGLVVIGGDDSNTNACLL 202 (567)
Q Consensus 136 ~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e~~~-~~~~~l~~~~id~LViIGGddS~t~A~~L 202 (567)
.+..+...=|-...--.+.+ .+.++++ ++.+.+++++.|.+|+.| ..-.-....|
T Consensus 128 ----------~~~~lA~~~gIp~~~~~~~~-~~~~~~~~~~~~~l~~~~~Dlivlag-y~~il~~~~l 183 (286)
T PRK06027 128 ----------DLRSLVERFGIPFHHVPVTK-ETKAEAEARLLELIDEYQPDLVVLAR-YMQILSPDFV 183 (286)
T ss_pred ----------hHHHHHHHhCCCEEEeccCc-cccchhHHHHHHHHHHhCCCEEEEec-chhhcCHHHH
Confidence 12222111122121111111 1222333 567889999999666554 4433333334
No 262
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=22.13 E-value=3.1e+02 Score=25.73 Aligned_cols=48 Identities=15% Similarity=0.183 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHc-CCCEEEEecCchhHHHHHHHHHHHhcCCC---CccEEEeccc
Q 042388 170 EQFKQAEETAKKL-DLDGLVVIGGDDSNTNACLLAENFRSKDM---KTRVIGCPKT 221 (567)
Q Consensus 170 e~~~~~~~~l~~~-~id~LViIGGddS~t~A~~Lae~~~~~g~---~i~VIgVPKT 221 (567)
+.++.+.+.+++. +.+++++.+. . .+..+.+++.+.|. ++.|++.--+
T Consensus 168 ~~~~~~~~~l~~~~~~~~i~~~~~-~---~a~~~~~~~~~~g~~~~~~~ii~~~~~ 219 (269)
T cd01391 168 KGFQALLQLLKAAPKPDAIFACND-E---MAAGALKAAREAGLTPGDISIIGFDGS 219 (269)
T ss_pred ccHHHHHHHHhcCCCCCEEEEcCc-h---HHHHHHHHHHHcCCCCCCCEEEecccc
Confidence 5677888888887 7888888765 2 33334444555554 5777765433
No 263
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.11 E-value=2.2e+02 Score=27.90 Aligned_cols=41 Identities=10% Similarity=0.219 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
+...+.+.+...++|++|+.+.+.. .. + +.+.+.+ ++||.+
T Consensus 46 ~~~~~~~~l~~~~vdgiii~~~~~~-~~---~-~~l~~~~--ipvV~~ 86 (268)
T cd06277 46 EEFELPSFLEDGKVDGIILLGGIST-EY---I-KEIKELG--IPFVLV 86 (268)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCh-HH---H-HHHhhcC--CCEEEE
Confidence 3445667788899999999986543 11 2 3344444 567754
No 264
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=22.03 E-value=69 Score=33.62 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCC
Q 042388 170 EQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGD 225 (567)
Q Consensus 170 e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDND 225 (567)
.+++.++..| .-..|.+|||||-.|. |...|++-.++.+.++-.|-=|.=||-|
T Consensus 197 ~~RQ~a~~~L-a~~vD~miVVGg~~Ss-NT~rL~eia~~~~~~t~~Ie~~~el~~~ 250 (281)
T PRK12360 197 KKRQESAKEL-SKEVDVMIVIGGKHSS-NTQKLVKICEKNCPNTFHIETADELDLE 250 (281)
T ss_pred hhHHHHHHHH-HHhCCEEEEecCCCCc-cHHHHHHHHHHHCCCEEEECChHHCCHH
Confidence 4456666666 3579999999999885 3466778877777666667666666544
No 265
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=22.00 E-value=7.7e+02 Score=27.45 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=15.1
Q ss_pred cCCCCchhhHHHHHHHHHH
Q 042388 97 SGGQAPGGHNVISGIFDYL 115 (567)
Q Consensus 97 sGG~aPG~nnvI~gl~~~l 115 (567)
.|....|..+++.++++.+
T Consensus 139 ~g~~~~G~~~a~~al~~~~ 157 (455)
T PRK14476 139 KGALEDGWAAAVEAIVEAL 157 (455)
T ss_pred CCcHHHHHHHHHHHHHHHh
Confidence 3467789999999998764
No 266
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=21.89 E-value=4.9e+02 Score=28.39 Aligned_cols=68 Identities=26% Similarity=0.368 Sum_probs=44.6
Q ss_pred CCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCC
Q 042388 88 KSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIE 167 (567)
Q Consensus 88 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~ 167 (567)
..+||.|.+|||- -+++++.. |+ ..|.+|+|+.. .+ |.+ ...+++ .
T Consensus 2 ~~~kV~v~mSGGV----DSSVaA~l--Lk--~QGyeViGl~m-----------~~-~~~----~~~~~C----------~ 47 (356)
T COG0482 2 KKKKVLVGMSGGV----DSSVAAYL--LK--EQGYEVIGLFM-----------KN-WDE----DGGGGC----------C 47 (356)
T ss_pred CCcEEEEEccCCH----HHHHHHHH--HH--HcCCeEEEEEE-----------Ee-ecc----CCCCcC----------C
Confidence 4589999999973 33443322 22 46899999872 11 111 111222 2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEE
Q 042388 168 TPEQFKQAEETAKKLDLDGLVV 189 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LVi 189 (567)
+++++..+.++|++++|...++
T Consensus 48 s~~d~~da~~va~~LGIp~~~v 69 (356)
T COG0482 48 SEEDLRDAERVADQLGIPLYVV 69 (356)
T ss_pred chhHHHHHHHHHHHhCCceEEE
Confidence 5688999999999999999887
No 267
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=21.85 E-value=1.8e+02 Score=28.29 Aligned_cols=42 Identities=5% Similarity=0.065 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
+.+.+.+.+...++|++|+.+.+.... .+ +++.+.+ ++||.+
T Consensus 47 ~~~~~~~~~~~~~vdgiii~~~~~~~~---~~-~~~~~~~--ipvV~~ 88 (268)
T cd06271 47 PLEVYRRLVESGLVDGVIISRTRPDDP---RV-ALLLERG--FPFVTH 88 (268)
T ss_pred HHHHHHHHHHcCCCCEEEEecCCCCCh---HH-HHHHhcC--CCEEEE
Confidence 345555666677899999988753322 12 3333334 567765
No 268
>PTZ00063 histone deacetylase; Provisional
Probab=21.74 E-value=1.9e+02 Score=32.30 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=51.8
Q ss_pred cCCcccccccC---CCCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCC
Q 042388 153 QGGFDMICSGR---DKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCK 229 (567)
Q Consensus 153 ~GG~~~LGS~R---~k~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~ 229 (567)
+-|+|.+..-+ ..+ |.+.+.++.+.++++++.-+++.||-=+..+.+.-..+.-. -+++.|..|+++|+..
T Consensus 257 qaG~D~~~~DpLg~l~L-t~~g~~~~~~~~~~~~~pil~l~gGGY~~~~lar~w~~~t~-----~~~~~~~~~~~~iP~~ 330 (436)
T PTZ00063 257 QCGADSLTGDRLGRFNL-TIKGHAACVEFVRSLNIPLLVLGGGGYTIRNVARCWAYETG-----VILNKHDEMSDQISLN 330 (436)
T ss_pred ECCccccCCCCCCCccc-CHHHHHHHHHHHHhcCCCEEEEeCccCCchHHHHHHHHHHH-----HHhCCcccCCccCCCC
Confidence 34666665443 233 77889999999999999988888887777776666555321 3567887899999954
Q ss_pred C
Q 042388 230 E 230 (567)
Q Consensus 230 ~ 230 (567)
+
T Consensus 331 ~ 331 (436)
T PTZ00063 331 D 331 (436)
T ss_pred c
Confidence 4
No 269
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=21.40 E-value=44 Score=35.74 Aligned_cols=72 Identities=24% Similarity=0.342 Sum_probs=42.1
Q ss_pred EEcCccccccccccCCccccccc--CCCCCChHHHHHHHHHHHHcC-----------------CCEEEEecCchhHHHHH
Q 042388 140 VELSTEYIYPYRNQGGFDMICSG--RDKIETPEQFKQAEETAKKLD-----------------LDGLVVIGGDDSNTNAC 200 (567)
Q Consensus 140 ~eLt~~~v~~~~n~GG~~~LGS~--R~k~~~~e~~~~~~~~l~~~~-----------------id~LViIGGddS~t~A~ 200 (567)
-.|+++.+..+...-|+|. |.= ..|. ...-.+.+.+.|.+-+ .|.+|-+|||||+-.|+
T Consensus 45 ~~lspdql~q~L~srgtdv-~~ll~~hKv-hkn~~~~~~~~l~k~giesklv~R~~lsq~i~waD~VisvGGDGTfL~Aa 122 (395)
T KOG4180|consen 45 SGLSPDQLLQYLESRGTDV-GRLLSKHKV-HKNAIKFCQEELSKAGIESKLVSRNDLSQPIRWADMVISVGGDGTFLLAA 122 (395)
T ss_pred cCCCHHHHHHHHHhcCchH-HHHHHHhHH-HHHHHHHHHHHHhhCCcceeeeehhhccCcCchhhEEEEecCccceeehh
Confidence 4566777776666666543 210 0122 1222344455554433 47899999999987766
Q ss_pred H-HHHHHhcCCCCccEEEec
Q 042388 201 L-LAENFRSKDMKTRVIGCP 219 (567)
Q Consensus 201 ~-Lae~~~~~g~~i~VIgVP 219 (567)
- +.+. .++||||-
T Consensus 123 srv~~~------~~PViGvN 136 (395)
T KOG4180|consen 123 SRVIDD------SKPVIGVN 136 (395)
T ss_pred hhhhcc------CCceeeec
Confidence 4 5432 57899973
No 270
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=21.14 E-value=1.2e+02 Score=32.69 Aligned_cols=37 Identities=24% Similarity=0.340 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHH
Q 042388 169 PEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAEN 205 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~ 205 (567)
-+-+.++++.|++.+||-|+-+||--.++.+..+|-.
T Consensus 71 ~~Tv~kaV~i~kee~idflLAVGGGSViD~tK~IAa~ 107 (384)
T COG1979 71 LETLMKAVEICKEENIDFLLAVGGGSVIDGTKFIAAA 107 (384)
T ss_pred HHHHHHHHHHHHHcCceEEEEecCcchhhhHHHHHhh
Confidence 4678999999999999999999998888888777654
No 271
>PRK14974 cell division protein FtsY; Provisional
Probab=20.99 E-value=4.1e+02 Score=28.56 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=13.6
Q ss_pred EEEEecCchhH--HHHHHHHHHHhcCCC
Q 042388 186 GLVVIGGDDSN--TNACLLAENFRSKDM 211 (567)
Q Consensus 186 ~LViIGGddS~--t~A~~Lae~~~~~g~ 211 (567)
.++++|-+|+- |+++.|+.++.++|.
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~ 169 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGF 169 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 45555555543 334556666655554
No 272
>PF00186 DHFR_1: Dihydrofolate reductase; InterPro: IPR001796 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself [].; GO: 0004146 dihydrofolate reductase activity, 0006545 glycine biosynthetic process, 0009165 nucleotide biosynthetic process, 0055114 oxidation-reduction process; PDB: 1ZDR_B 3SA2_B 3JWK_B 3E0B_A 3S9U_B 3FL9_H 3FL8_F 2QK8_A 3JW3_A 3SA1_B ....
Probab=20.97 E-value=82 Score=30.11 Aligned_cols=53 Identities=23% Similarity=0.277 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCC
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEV 231 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~i 231 (567)
.++.+++.++.. .+-++||||-.-...+..+++ .+-+--|+.+.+.|..-+.+
T Consensus 79 s~~~al~~~~~~-~~~i~ViGG~~iy~~~l~~~d-------~l~lT~I~~~~~~D~~fP~~ 131 (161)
T PF00186_consen 79 SLEEALELAKDK-DEEIFVIGGAEIYEQFLPYAD-------RLYLTRIDGDFEGDTFFPEI 131 (161)
T ss_dssp SHHHHHHHHTTS-ESEEEEEE-HHHHHHHHHGES-------EEEEEEESSESTTSEECSSC
T ss_pred CHHHHHHHhhcc-CCcEEEECCHHHHHHHHHhCC-------eEEEEEEcCccccceECCCC
Confidence 366777755555 899999999998887765433 46778889999999876654
No 273
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=20.80 E-value=8.8e+02 Score=24.48 Aligned_cols=50 Identities=12% Similarity=0.063 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCch---------hHHHHHHHHHHHhcCCCCccEEEe
Q 042388 169 PEQFKQAEETAKKLDLDGLVVIGGDD---------SNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~id~LViIGGdd---------S~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
...+.++++.+++++++++=+-.++. +-.....+.+.+.+.|+++..++.
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~ 73 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPSMCL 73 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCceeeec
Confidence 34588999999999999996643221 244566677778888887665544
No 274
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.80 E-value=6.6e+02 Score=26.44 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=23.8
Q ss_pred CCChHhHHHHHHHHHHHHHHHHhhc-CCeeEEE--EecC
Q 042388 234 SFGFDTACKIFSEMIGNVMTDARST-GKYYHFV--RLMG 269 (567)
Q Consensus 234 S~GFdTA~k~~ae~I~ni~~da~S~-~k~~~fV--evMG 269 (567)
++.=+.+.+++.++++.++ +.-.. .+|+|+= |+..
T Consensus 133 ~~~~~~t~~f~~~l~~E~~-~~f~~~~~~~HiGgDE~~~ 170 (326)
T cd06564 133 DISNPEAVKFVKALFDEYL-DGFNPKSDTVHIGADEYAG 170 (326)
T ss_pred cCCCHHHHHHHHHHHHHHH-HhcCCCCCEEEeccccccc
Confidence 6667889999999999986 44431 3577753 5443
No 275
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.
Probab=20.74 E-value=6.9e+02 Score=27.47 Aligned_cols=129 Identities=16% Similarity=0.118 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHH---cCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCC-CCC-----CCCCChHh
Q 042388 169 PEQFKQAEETAKK---LDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKC-KEV-----PTSFGFDT 239 (567)
Q Consensus 169 ~e~~~~~~~~l~~---~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~-~~i-----e~S~GFdT 239 (567)
.+.+.+..+...+ .++.-+-|-|-+|-=|+...|+.-+.+.|.. +++-+|+-|-+.+ +.+ -+|+..-|
T Consensus 67 ~~al~~la~~~~~~~~~~~~vI~ITGTnGKTTT~~ml~~iL~~~g~~---~~~~~t~g~~~~~n~~ig~p~~~tt~~~~~ 143 (464)
T TIGR01085 67 RHALSSLAAAFYGHPSKKLKVIGVTGTNGKTTTTSLIAQLLRLLGKK---TGLIGTIGYRLGGNDLIKNPAALTTPEALT 143 (464)
T ss_pred HHHHHHHHHHHhCChhHccEEEEEECCCCcHhHHHHHHHHHHHcCCC---EEEECccceeECCeeeecCcccCCCCCHHH
Confidence 3456666666655 3677888889999999999999999887754 4555566543321 111 13444445
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEE----CCcchhhhcchHhHHHHHHHHH
Q 042388 240 ACKIFSEMIGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITII----GEEVAAKKQTLKNVTDYITDII 312 (567)
Q Consensus 240 A~k~~ae~I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlI----pEe~~~~~~tL~~iv~~i~d~I 312 (567)
+...+..+. . ....|.++|+ |.+.+.+.--+ +..|++.+| ++... .--|++++.+.-...+
T Consensus 144 ~~~~l~~~~-------~-~~~~~~VlE~-g~~~~~~~~l~--~~~p~iaviTnI~~dHl~-~~gs~e~i~~~K~~i~ 208 (464)
T TIGR01085 144 LQSTLAEMV-------E-AGAQYAVMEV-SSHALAQGRVR--GVRFDAAVFTNLSRDHLD-FHGTMENYFAAKASLF 208 (464)
T ss_pred HHHHHHHHH-------H-CCCCEEEEEe-cHHHHhhCCcc--CceeCEEEEccCCCCCCc-ccCCHHHHHHHHHHHh
Confidence 444443321 1 1223789995 44443322112 268999877 34433 2237666666555444
No 276
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=20.66 E-value=1.6e+02 Score=31.04 Aligned_cols=36 Identities=28% Similarity=0.370 Sum_probs=28.0
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecc
Q 042388 183 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPK 220 (567)
Q Consensus 183 ~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPK 220 (567)
.+|++|+--|.|+ ++.=++.+|++.+.+++||||..
T Consensus 183 ~~d~vv~~vGtGg--t~~Gi~~~~k~~~~~~~vigVe~ 218 (331)
T PRK03910 183 DFDAVVVASGSGG--THAGLAAGLAALGPDIPVIGVTV 218 (331)
T ss_pred CCCEEEEeCCcHH--HHHHHHHHHHHhCCCCeEEEEEe
Confidence 4899988888877 44456777877777899999975
No 277
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=20.61 E-value=2.3e+02 Score=26.26 Aligned_cols=48 Identities=21% Similarity=0.152 Sum_probs=35.0
Q ss_pred ccccccccCCcccccccCCCCCChHHHHHHHHHHHHcCC-CEEEEecCch
Q 042388 146 YIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDL-DGLVVIGGDD 194 (567)
Q Consensus 146 ~v~~~~n~GG~~~LGS~R~k~~~~e~~~~~~~~l~~~~i-d~LViIGGdd 194 (567)
.++..... ..+++|-|--.-.+.+.+++..+.|++.++ +..|++||.-
T Consensus 42 ~v~aa~~~-~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~ 90 (128)
T cd02072 42 FIDAAIET-DADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNL 90 (128)
T ss_pred HHHHHHHc-CCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCC
Confidence 44554444 336777655444567889999999999999 8889999984
No 278
>PHA02518 ParA-like protein; Provisional
Probab=20.46 E-value=7.3e+02 Score=23.44 Aligned_cols=92 Identities=18% Similarity=0.143 Sum_probs=51.4
Q ss_pred cCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCC-------CCChH--hHHHHHHHHHHHHHHHHhhcCCe
Q 042388 191 GGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPT-------SFGFD--TACKIFSEMIGNVMTDARSTGKY 261 (567)
Q Consensus 191 GGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~-------S~GFd--TA~k~~ae~I~ni~~da~S~~k~ 261 (567)
||-|-=|.|..||-++.++|.++-+| |-|.+++.... ..-+. +..+.+.+.+.. .. ..-.
T Consensus 10 GGvGKTT~a~~la~~la~~g~~vlli------D~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~----~~-~~~d 78 (211)
T PHA02518 10 GGAGKTTVATNLASWLHADGHKVLLV------DLDPQGSSTDWAEAREEGEPLIPVVRMGKSIRADLPK----VA-SGYD 78 (211)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEE------eCCCCCChHHHHHhcccCCCCCchhhccHHHHHHHHH----Hh-ccCC
Confidence 88998888999999998888764433 66665432100 00000 000112222222 21 2223
Q ss_pred eEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchh
Q 042388 262 YHFVRLMGRAASHITLECALQTHPNITIIGEEVAA 296 (567)
Q Consensus 262 ~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~ 296 (567)
|-||-+-|+ .+.+... +|+ .+|.+|||=++..
T Consensus 79 ~viiD~p~~-~~~~~~~-~l~-~aD~viip~~ps~ 110 (211)
T PHA02518 79 YVVVDGAPQ-DSELARA-ALR-IADMVLIPVQPSP 110 (211)
T ss_pred EEEEeCCCC-ccHHHHH-HHH-HCCEEEEEeCCCh
Confidence 678888876 5666544 443 7899999876643
No 279
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.45 E-value=4.5e+02 Score=25.57 Aligned_cols=44 Identities=11% Similarity=0.103 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEec
Q 042388 170 EQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCP 219 (567)
Q Consensus 170 e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVP 219 (567)
+...+.++.+...++|++++...+.+.. .+ +.+.+. +++||.+=
T Consensus 42 ~~~~~~i~~l~~~~~dgiii~~~~~~~~---~~-~~~~~~--~ipvV~i~ 85 (270)
T cd06296 42 SPERQWVERLSARRTDGVILVTPELTSA---QR-AALRRT--GIPFVVVD 85 (270)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCChH---HH-HHHhcC--CCCEEEEe
Confidence 4455677888899999999988764322 23 333333 46777753
No 280
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=20.34 E-value=1.4e+02 Score=28.36 Aligned_cols=32 Identities=22% Similarity=0.138 Sum_probs=23.8
Q ss_pred EEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 187 LVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 187 LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
+.+-||-||...+..|.+.+...+.++.+|.|
T Consensus 4 va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~v 35 (189)
T TIGR02432 4 VAVSGGVDSMALLHLLLKLQPKLKIRLIAAHV 35 (189)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 56779999999999998876655666555543
No 281
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=20.24 E-value=94 Score=30.44 Aligned_cols=51 Identities=22% Similarity=0.299 Sum_probs=33.6
Q ss_pred HHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHH
Q 042388 179 AKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIF 244 (567)
Q Consensus 179 l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ 244 (567)
++.++.|+||+-||-++-.......+.+++..-+++|.|| |+|+...+..+
T Consensus 39 ~~~~~~d~iIlsgGP~~p~~~~~~~~~i~~~~~~~PvLGI---------------ClG~Qlla~~l 89 (195)
T PRK07649 39 IENMKPDFLMISPGPCSPNEAGISMEVIRYFAGKIPIFGV---------------CLGHQSIAQVF 89 (195)
T ss_pred HhhCCCCEEEECCCCCChHhCCCchHHHHHhcCCCCEEEE---------------cHHHHHHHHHc
Confidence 3557899999999999876643333332221224667764 99998877754
No 282
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=20.21 E-value=6.4e+02 Score=23.00 Aligned_cols=86 Identities=14% Similarity=0.226 Sum_probs=50.2
Q ss_pred cCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHH-HHHHHHHHHHHHHHhhcCCeeEEEEecC
Q 042388 191 GGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTAC-KIFSEMIGNVMTDARSTGKYYHFVRLMG 269 (567)
Q Consensus 191 GGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~-k~~ae~I~ni~~da~S~~k~~~fVevMG 269 (567)
||.|-=|.|..||..+.++|.++-+| |-|.....++.-+|-+... ..+.+.+ ..-|-||.+-+
T Consensus 9 gG~GKtt~a~~la~~l~~~g~~vllv------D~D~~~~~~~~~~~~~~~~~~~~~~~~----------~~d~viiD~p~ 72 (179)
T cd02036 9 GGVGKTTTTANLGTALAQLGYKVVLI------DADLGLRNLDLILGLENRVVYTLHDVL----------AGDYILIDSPA 72 (179)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEE------eCCCCCCCchhhccccccCCcchhhcc----------cCCEEEEECCC
Confidence 89999999999999999888765554 7777543332223332110 0111111 11467999877
Q ss_pred CCCcHHHHHhhhhcCCcEEEECCcch
Q 042388 270 RAASHITLECALQTHPNITIIGEEVA 295 (567)
Q Consensus 270 R~ag~LAL~~aLat~pnivlIpEe~~ 295 (567)
.. +..+. .++ ..+|.+++|=++.
T Consensus 73 ~~-~~~~~-~~l-~~ad~viiv~~~~ 95 (179)
T cd02036 73 GI-ERGFI-TAI-APADEALLVTTPE 95 (179)
T ss_pred CC-cHHHH-HHH-HhCCcEEEEeCCC
Confidence 54 34433 334 4778888865543
No 283
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=20.20 E-value=7.9e+02 Score=23.71 Aligned_cols=139 Identities=20% Similarity=0.129 Sum_probs=0.0
Q ss_pred EEEEEe--cCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCC
Q 042388 91 KIGVVL--SGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIET 168 (567)
Q Consensus 91 ~IgIv~--sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~ 168 (567)
+||+++ +|..++=+.....|+-.++...+... .+.+.-+++...+-.. +
T Consensus 1 ~ig~~~p~sg~~~~~~~~~~~g~~~a~~~~n~~g-----------g~~g~~v~~~~~d~~~------------------~ 51 (298)
T cd06268 1 KIGVLLPLSGPLAALGEPVRNGAELAVEEINAAG-----------GILGRKIELVVEDTQG------------------D 51 (298)
T ss_pred CeeeeecCcCchhhcChhHHHHHHHHHHHHHhcC-----------CCCCeEEEEEEecCCC------------------C
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHHH
Q 042388 169 PEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMI 248 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I 248 (567)
++...++++.+.+.+++++|...+..+...+..+++.. ++++|..-.+-+.-.. ......|-..+.-...+..+
T Consensus 52 ~~~~~~~~~~l~~~~v~~iig~~~~~~~~~~~~~~~~~-----~ip~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 125 (298)
T cd06268 52 PEAAAAAARELVDDGVDAVIGPLSSGVALAAAPVAEEA-----GVPLISPGATSPALTG-KGNPYVFRTAPSDAQQAAAL 125 (298)
T ss_pred HHHHHHHHHHHHhCCceEEEcCCcchhHHhhHHHHHhC-----CCcEEccCCCCccccc-CCCceEEEcccCcHHHHHHH
Q ss_pred HHHHHHHhhcCCeeEEE
Q 042388 249 GNVMTDARSTGKYYHFV 265 (567)
Q Consensus 249 ~ni~~da~S~~k~~~fV 265 (567)
........ ..+++.+|
T Consensus 126 ~~~~~~~~-~~~~i~~v 141 (298)
T cd06268 126 ADYLAEKG-KVKKVAII 141 (298)
T ss_pred HHHHHHhc-CCCEEEEE
No 284
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=20.20 E-value=4.7e+02 Score=25.25 Aligned_cols=83 Identities=19% Similarity=0.263 Sum_probs=52.6
Q ss_pred EEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChHH
Q 042388 92 IGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPEQ 171 (567)
Q Consensus 92 IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e~ 171 (567)
||||+.....|-...++.|+.++++. .+.+++ +. .+. .+++.
T Consensus 2 i~~v~~~~~~~~~~~~~~~i~~~~~~--~g~~~~-------------~~--------------------~~~---~~~~~ 43 (267)
T cd06284 2 ILVLVPDIANPFFSEILKGIEDEARE--AGYGVL-------------LG--------------------DTR---SDPER 43 (267)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHH--cCCeEE-------------Ee--------------------cCC---CChHH
Confidence 78888888889999999999888764 223322 00 000 12334
Q ss_pred HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEec
Q 042388 172 FKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCP 219 (567)
Q Consensus 172 ~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVP 219 (567)
...+++.+...++|++++.+.+.... +.+.. +. +++||.+-
T Consensus 44 ~~~~~~~~~~~~vdgiii~~~~~~~~----~~~~~-~~--~ipvv~~~ 84 (267)
T cd06284 44 EQEYLDLLRRKQADGIILLDGSLPPT----ALTAL-AK--LPPIVQAC 84 (267)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCHH----HHHHH-hc--CCCEEEEe
Confidence 45667889999999999988764433 11222 22 46788763
No 285
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=20.18 E-value=2.6e+02 Score=31.11 Aligned_cols=70 Identities=19% Similarity=0.203 Sum_probs=45.0
Q ss_pred ChHHHHHHHHHHHHc---CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHH
Q 042388 168 TPEQFKQAEETAKKL---DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIF 244 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~---~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ 244 (567)
+++++.++++.+++. +.||+||.=|-|||.-.+.+-.++. +.+.+||-+=.=.--| -++.|-..|.+
T Consensus 134 tp~~W~~La~~I~~~~~~~~dGvVVtHGTDTM~yTA~aLs~~l--~~~kPVVlTGAqrp~~--------~~~sDa~~NL~ 203 (419)
T PRK04183 134 TPEYWVEIAEAVYEEIKNGADGVVVAHGTDTMHYTAAALSFML--KTPVPIVFVGAQRSSD--------RPSSDAAMNLI 203 (419)
T ss_pred CHHHHHHHHHHHHHHhhccCCeEEEecCCchHHHHHHHHHHhc--CCCCCEEEeCCCCCCC--------CCCchHHHHHH
Confidence 677887777777665 7999999999999987655444444 4455676543322222 45555566555
Q ss_pred HHH
Q 042388 245 SEM 247 (567)
Q Consensus 245 ae~ 247 (567)
+.+
T Consensus 204 ~Av 206 (419)
T PRK04183 204 CAV 206 (419)
T ss_pred HHH
Confidence 443
No 286
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=20.15 E-value=1e+02 Score=34.90 Aligned_cols=115 Identities=25% Similarity=0.346 Sum_probs=66.7
Q ss_pred CCEEEcCccc---cccccccCCcccccccCC-CCCChHHHHHH-HHHHHHcCCCEEEEecCchhHHHHHHH--HHHHhcC
Q 042388 137 CKYVELSTEY---IYPYRNQGGFDMICSGRD-KIETPEQFKQA-EETAKKLDLDGLVVIGGDDSNTNACLL--AENFRSK 209 (567)
Q Consensus 137 ~~~~eLt~~~---v~~~~n~GG~~~LGS~R~-k~~~~e~~~~~-~~~l~~~~id~LViIGGddS~t~A~~L--ae~~~~~ 209 (567)
++|++|.+.. ++.+++. |. .++..-. +.-+.++++.. .+.+.++ +||++|-||.|.--..-++ ++|.+++
T Consensus 295 GKYv~l~DaY~Sv~EAL~ha-g~-~~~~~v~i~wIdse~le~~~~~~~~~~-~dgIlVPGGFG~RG~eGkI~Ai~yAREn 371 (533)
T COG0504 295 GKYVELPDAYKSVIEALKHA-GI-ALGVKVNIKWIDSEDLEEENAAELEKL-VDGILVPGGFGYRGVEGKIAAIRYAREN 371 (533)
T ss_pred ECCcCchhHHHHHHHHHHhh-hh-hcCCceeeEEEccccccccchhhhhhc-CCEEEeCCCCCcCchHHHHHHHHHHHhc
Confidence 4677777754 4444544 32 2222111 11133333332 2244444 9999999999964333333 4666665
Q ss_pred CCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhhcCC----eeEEEEecCCCC
Q 042388 210 DMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDARSTGK----YYHFVRLMGRAA 272 (567)
Q Consensus 210 g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~ni~~da~S~~k----~~~fVevMGR~a 272 (567)
+ ++..|| |+|+..|+=.+|.-+-.+ .+|.|+.- -+-||.+|.-..
T Consensus 372 ~--iP~lGI---------------ClGmQ~aviE~ARnv~Gl-~~AnS~Efdp~t~~pVv~l~~eq~ 420 (533)
T COG0504 372 N--IPFLGI---------------CLGMQLAVIEFARNVLGL-EGANSTEFDPDTKYPVVDLMPEQK 420 (533)
T ss_pred C--CCEEEE---------------chhHHHHHHHHHHHhcCC-ccCcccccCCCCCCceEEeccccc
Confidence 5 456663 999999999998877777 48888531 134666655443
Done!