Query 042388
Match_columns 567
No_of_seqs 259 out of 1400
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 09:38:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f48_A Diphosphate--fructose-6 100.0 8E-140 3E-144 1153.5 44.4 536 20-557 2-553 (555)
2 3hno_A Pyrophosphate-dependent 100.0 4.8E-84 1.6E-88 691.3 31.9 343 89-498 3-363 (419)
3 1pfk_A Phosphofructokinase; tr 100.0 1.4E-80 4.9E-85 643.9 34.2 300 89-493 2-303 (320)
4 1zxx_A 6-phosphofructokinase; 100.0 1.3E-80 4.6E-85 643.9 33.3 302 90-496 2-304 (319)
5 2hig_A 6-phospho-1-fructokinas 100.0 1.9E-80 6.4E-85 670.8 31.2 338 86-496 94-435 (487)
6 4a3s_A 6-phosphofructokinase; 100.0 1.3E-77 4.5E-82 622.8 31.2 303 89-496 1-304 (319)
7 3o8l_A 6-phosphofructokinase, 100.0 7.7E-74 2.6E-78 646.8 29.6 343 86-519 12-380 (762)
8 3o8o_B 6-phosphofructokinase s 100.0 1.3E-72 4.3E-77 637.2 35.4 343 88-520 2-371 (766)
9 3o8o_A 6-phosphofructokinase s 100.0 2.2E-72 7.5E-77 635.1 34.0 343 87-520 3-371 (787)
10 3o8l_A 6-phosphofructokinase, 100.0 2.9E-72 1E-76 633.9 32.6 328 87-506 398-744 (762)
11 3opy_B 6-phosphofructo-1-kinas 100.0 3.6E-72 1.2E-76 639.8 29.9 344 87-520 179-549 (941)
12 3opy_A 6-phosphofructo-1-kinas 100.0 2E-71 7E-76 631.8 33.6 344 87-521 208-577 (989)
13 3o8o_A 6-phosphofructokinase s 100.0 1.7E-70 5.7E-75 619.7 31.3 340 87-517 391-774 (787)
14 3opy_B 6-phosphofructo-1-kinas 100.0 1.9E-69 6.6E-74 617.3 31.0 329 87-506 569-927 (941)
15 3o8o_B 6-phosphofructokinase s 100.0 3.1E-69 1E-73 609.6 31.4 328 88-506 392-751 (766)
16 3opy_A 6-phosphofructo-1-kinas 100.0 3.2E-68 1.1E-72 605.6 29.2 328 87-506 596-972 (989)
17 3m9w_A D-xylose-binding peripl 88.9 13 0.00043 36.2 16.3 105 89-239 2-106 (313)
18 2i2c_A Probable inorganic poly 85.6 0.62 2.1E-05 46.5 4.4 46 172-220 17-69 (272)
19 3l49_A ABC sugar (ribose) tran 82.7 33 0.0011 32.6 16.2 154 88-293 4-163 (291)
20 3g1w_A Sugar ABC transporter; 81.9 38 0.0013 32.5 17.9 107 88-239 3-109 (305)
21 1oj7_A Hypothetical oxidoreduc 77.8 3.4 0.00012 43.4 6.8 55 168-222 91-161 (408)
22 2qv7_A Diacylglycerol kinase D 75.0 3.3 0.00011 42.1 5.6 45 180-227 77-121 (337)
23 3uhj_A Probable glycerol dehyd 74.1 6.4 0.00022 41.3 7.6 49 168-221 91-139 (387)
24 3gbv_A Putative LACI-family tr 74.1 40 0.0014 32.1 13.0 110 87-239 6-117 (304)
25 3iv7_A Alcohol dehydrogenase I 73.7 5.5 0.00019 41.4 7.0 52 168-225 73-124 (364)
26 1z0s_A Probable inorganic poly 72.3 2.2 7.5E-05 43.0 3.4 53 183-253 68-122 (278)
27 1jq5_A Glycerol dehydrogenase; 72.2 8.2 0.00028 39.8 7.9 48 169-221 72-119 (370)
28 3egc_A Putative ribose operon 72.1 8.9 0.0003 36.9 7.7 104 87-239 6-109 (291)
29 3jzd_A Iron-containing alcohol 71.3 6.3 0.00021 40.8 6.7 50 168-222 74-123 (358)
30 3ox4_A Alcohol dehydrogenase 2 71.3 8 0.00028 40.3 7.6 58 168-225 73-143 (383)
31 1u0t_A Inorganic polyphosphate 70.9 2.9 9.9E-05 42.3 3.9 33 182-219 74-106 (307)
32 3hl0_A Maleylacetate reductase 70.8 7.1 0.00024 40.3 7.0 50 168-222 72-121 (353)
33 2bon_A Lipid kinase; DAG kinas 70.5 6 0.0002 40.2 6.2 46 181-227 80-125 (332)
34 3brq_A HTH-type transcriptiona 69.8 33 0.0011 32.5 11.2 89 87-219 17-108 (296)
35 1rrm_A Lactaldehyde reductase; 69.7 8.3 0.00028 40.0 7.2 56 168-223 73-143 (386)
36 3tb6_A Arabinose metabolism tr 69.1 33 0.0011 32.6 11.0 106 89-239 15-121 (298)
37 3rf7_A Iron-containing alcohol 68.6 7.7 0.00026 40.5 6.7 56 168-223 91-162 (375)
38 3jy6_A Transcriptional regulat 68.6 45 0.0015 31.6 11.8 103 87-239 5-107 (276)
39 2an1_A Putative kinase; struct 68.2 6.5 0.00022 39.0 5.9 90 89-219 5-94 (292)
40 3clh_A 3-dehydroquinate syntha 67.9 8.6 0.00029 39.4 6.8 52 168-222 67-121 (343)
41 1xah_A Sadhqs, 3-dehydroquinat 66.9 8.4 0.00029 39.6 6.5 52 168-222 72-126 (354)
42 3l6u_A ABC-type sugar transpor 66.0 74 0.0025 30.1 12.9 107 87-239 6-112 (293)
43 3bfj_A 1,3-propanediol oxidore 65.8 13 0.00045 38.5 7.9 55 168-222 77-144 (387)
44 3pfn_A NAD kinase; structural 65.4 3.6 0.00012 43.1 3.3 121 87-252 36-162 (365)
45 1o2d_A Alcohol dehydrogenase, 65.2 8.1 0.00028 40.0 6.0 58 168-225 83-153 (371)
46 3dbi_A Sugar-binding transcrip 64.5 47 0.0016 32.6 11.4 105 87-239 59-165 (338)
47 3gv0_A Transcriptional regulat 64.4 24 0.00082 33.8 9.0 104 87-239 6-111 (288)
48 3rot_A ABC sugar transporter, 64.2 1E+02 0.0035 29.4 14.2 92 89-222 3-96 (297)
49 2fep_A Catabolite control prot 64.1 52 0.0018 31.4 11.4 104 87-239 14-117 (289)
50 1vlj_A NADH-dependent butanol 64.0 13 0.00046 38.8 7.6 55 168-222 86-153 (407)
51 1yt5_A Inorganic polyphosphate 63.5 2.6 9E-05 41.5 1.8 32 182-219 40-71 (258)
52 3o74_A Fructose transport syst 63.1 29 0.001 32.5 9.2 103 89-239 2-104 (272)
53 3afo_A NADH kinase POS5; alpha 62.6 3.2 0.00011 43.8 2.3 37 88-125 40-76 (388)
54 1sg6_A Pentafunctional AROM po 62.5 13 0.00044 38.9 7.0 52 168-222 85-141 (393)
55 2rgy_A Transcriptional regulat 62.3 50 0.0017 31.5 10.9 104 87-239 6-112 (290)
56 3k4h_A Putative transcriptiona 62.1 85 0.0029 29.6 12.5 105 87-239 6-115 (292)
57 3ksm_A ABC-type sugar transpor 58.3 1.2E+02 0.004 28.2 13.5 106 90-239 1-107 (276)
58 1ujn_A Dehydroquinate synthase 58.2 15 0.00051 37.7 6.5 52 168-222 66-120 (348)
59 3kjx_A Transcriptional regulat 58.1 68 0.0023 31.6 11.3 88 87-218 66-153 (344)
60 3okf_A 3-dehydroquinate syntha 58.0 15 0.00053 38.5 6.6 52 168-222 105-159 (390)
61 3ce9_A Glycerol dehydrogenase; 57.3 9.2 0.00032 39.1 4.7 52 168-225 74-125 (354)
62 3qbe_A 3-dehydroquinate syntha 55.4 19 0.00065 37.5 6.8 52 168-222 85-139 (368)
63 3qk7_A Transcriptional regulat 55.2 16 0.00054 35.3 5.8 103 87-239 4-110 (294)
64 3c3k_A Alanine racemase; struc 54.4 95 0.0032 29.4 11.3 103 87-239 6-108 (285)
65 1zq1_A Glutamyl-tRNA(Gln) amid 52.5 46 0.0016 35.5 9.3 50 168-218 150-202 (438)
66 3cs3_A Sugar-binding transcrip 51.5 73 0.0025 30.0 9.9 31 87-117 6-36 (277)
67 2gru_A 2-deoxy-scyllo-inosose 51.0 22 0.00077 36.6 6.5 52 168-222 76-130 (368)
68 3nxk_A Cytoplasmic L-asparagin 50.5 1.2E+02 0.004 31.1 11.7 49 168-218 70-121 (334)
69 1meo_A Phosophoribosylglycinam 49.6 41 0.0014 32.1 7.6 93 90-202 1-97 (209)
70 1qpz_A PURA, protein (purine n 48.7 2E+02 0.0068 28.0 12.9 89 87-218 56-144 (340)
71 3s40_A Diacylglycerol kinase; 48.1 15 0.00051 36.7 4.4 42 183-227 63-104 (304)
72 1kq3_A Glycerol dehydrogenase; 48.0 16 0.00053 37.8 4.7 48 168-221 80-127 (376)
73 3av3_A Phosphoribosylglycinami 47.6 49 0.0017 31.5 7.8 98 89-203 3-101 (212)
74 8abp_A L-arabinose-binding pro 46.7 1.1E+02 0.0036 29.2 10.3 87 89-218 2-88 (306)
75 3o1i_D Periplasmic protein TOR 45.6 1E+02 0.0036 29.1 10.0 73 87-195 3-75 (304)
76 1ta9_A Glycerol dehydrogenase; 45.5 19 0.00064 38.5 4.9 47 169-221 132-178 (450)
77 1dbq_A Purine repressor; trans 45.1 2E+02 0.0068 26.9 13.0 89 88-219 6-94 (289)
78 3p9x_A Phosphoribosylglycinami 45.0 73 0.0025 30.5 8.6 99 89-204 2-101 (211)
79 3lkv_A Uncharacterized conserv 44.7 1.6E+02 0.0054 28.7 11.4 74 86-192 5-78 (302)
80 3d8u_A PURR transcriptional re 44.2 34 0.0011 32.2 6.1 102 89-239 3-104 (275)
81 3l8m_A Probable thiamine pyrop 44.1 24 0.00082 33.8 5.0 81 120-204 21-115 (212)
82 4pga_A Glutaminase-asparaginas 43.5 1.4E+02 0.0046 30.7 10.8 49 168-218 71-123 (337)
83 1agx_A Glutaminase-asparaginas 42.3 46 0.0016 34.0 7.1 49 168-218 63-115 (331)
84 2vk2_A YTFQ, ABC transporter p 42.2 1.2E+02 0.004 29.1 9.9 89 89-219 2-90 (306)
85 2o20_A Catabolite control prot 41.2 2.3E+02 0.008 27.4 12.0 88 88-219 62-149 (332)
86 3o1l_A Formyltetrahydrofolate 41.1 1.3E+02 0.0045 30.3 10.1 121 56-203 78-200 (302)
87 3auf_A Glycinamide ribonucleot 40.9 1.2E+02 0.0043 29.1 9.6 101 86-203 19-120 (229)
88 2x7x_A Sensor protein; transfe 40.8 2.3E+02 0.0077 27.4 11.8 107 87-239 4-110 (325)
89 1jkx_A GART;, phosphoribosylgl 38.6 94 0.0032 29.5 8.2 97 90-203 1-98 (212)
90 3e61_A Putative transcriptiona 38.3 2.5E+02 0.0085 26.1 13.5 100 87-239 6-106 (277)
91 2ioy_A Periplasmic sugar-bindi 38.3 1.5E+02 0.0051 28.0 9.8 104 90-239 2-105 (283)
92 2yxb_A Coenzyme B12-dependent 37.9 1.1E+02 0.0038 27.6 8.3 92 88-196 17-111 (161)
93 3clk_A Transcription regulator 37.6 1.5E+02 0.0051 28.0 9.7 104 87-239 6-109 (290)
94 1o7j_A L-asparaginase; atomic 37.4 52 0.0018 33.6 6.5 49 168-218 66-118 (327)
95 3h5o_A Transcriptional regulat 37.1 3E+02 0.01 26.7 13.6 88 87-218 60-147 (339)
96 1iv0_A Hypothetical protein; r 37.0 22 0.00076 29.9 3.1 32 196-227 37-68 (98)
97 3e3m_A Transcriptional regulat 36.5 43 0.0015 33.3 5.7 88 87-218 68-155 (355)
98 1hyq_A MIND, cell division inh 36.2 2.7E+02 0.0093 26.0 11.5 26 191-216 12-37 (263)
99 2wlt_A L-asparaginase; hydrola 35.6 52 0.0018 33.6 6.2 49 168-218 66-118 (332)
100 2rjo_A Twin-arginine transloca 35.4 2.5E+02 0.0084 27.2 11.1 93 88-222 4-98 (332)
101 3brs_A Periplasmic binding pro 34.9 2.4E+02 0.0082 26.3 10.6 108 88-239 4-113 (289)
102 3d02_A Putative LACI-type tran 34.2 2.6E+02 0.009 26.2 10.9 90 88-218 3-92 (303)
103 2kwv_A RAD30 homolog B, DNA po 34.0 14 0.00047 27.2 1.1 18 369-386 18-35 (48)
104 3kke_A LACI family transcripti 34.0 3.1E+02 0.011 26.0 11.6 103 87-239 13-115 (303)
105 2iks_A DNA-binding transcripti 33.9 1.1E+02 0.0036 29.2 7.9 105 87-239 18-122 (293)
106 3hs3_A Ribose operon repressor 33.8 1.1E+02 0.0037 29.0 7.9 98 87-239 8-107 (277)
107 1wls_A L-asparaginase; structu 33.5 76 0.0026 32.3 7.1 50 168-218 56-107 (328)
108 1wsa_A Asparaginase, asparagin 33.4 52 0.0018 33.6 5.8 49 168-218 64-116 (330)
109 2d6f_A Glutamyl-tRNA(Gln) amid 33.1 72 0.0025 34.0 7.0 49 168-218 149-200 (435)
110 3gyb_A Transcriptional regulat 32.7 1.4E+02 0.0048 27.9 8.5 101 88-196 4-130 (280)
111 8abp_A L-arabinose-binding pro 32.6 2.3E+02 0.0079 26.7 10.1 47 170-218 181-231 (306)
112 2fn9_A Ribose ABC transporter, 31.9 3.2E+02 0.011 25.5 12.6 89 89-219 2-90 (290)
113 4b4t_W RPN10, 26S proteasome r 31.5 86 0.003 31.1 6.9 51 170-220 89-146 (268)
114 4ds3_A Phosphoribosylglycinami 30.8 1.2E+02 0.0042 28.8 7.6 95 88-202 6-104 (209)
115 3lkb_A Probable branched-chain 30.6 2.5E+02 0.0086 27.7 10.4 142 87-265 5-149 (392)
116 3hut_A Putative branched-chain 30.4 3.1E+02 0.011 26.4 10.9 33 88-120 3-37 (358)
117 3ot5_A UDP-N-acetylglucosamine 29.5 1.3E+02 0.0044 30.9 8.1 115 90-220 28-146 (403)
118 3uug_A Multiple sugar-binding 29.4 3.8E+02 0.013 25.5 20.5 106 88-239 2-108 (330)
119 2nrr_A Uvrabc system protein C 29.2 63 0.0021 29.8 4.9 93 164-260 53-153 (159)
120 3lp6_A Phosphoribosylaminoimid 29.0 52 0.0018 30.8 4.4 48 168-221 47-94 (174)
121 3fst_A 5,10-methylenetetrahydr 28.4 56 0.0019 33.0 5.0 104 108-219 41-153 (304)
122 3q12_A Pantoate--beta-alanine 28.3 75 0.0026 32.0 5.8 39 253-291 18-57 (287)
123 3s4y_A Thiamin pyrophosphokina 28.0 83 0.0028 30.7 6.0 104 89-205 20-149 (247)
124 1tjy_A Sugar transport protein 28.0 1.8E+02 0.0061 28.1 8.6 91 89-220 3-93 (316)
125 3apt_A Methylenetetrahydrofola 27.1 43 0.0015 33.8 3.9 102 109-219 32-150 (310)
126 2pn1_A Carbamoylphosphate synt 26.8 4.4E+02 0.015 25.4 12.6 42 168-210 57-98 (331)
127 3h3e_A Uncharacterized protein 26.7 1.5E+02 0.0051 29.2 7.6 76 94-206 175-250 (267)
128 3cqj_A L-ribulose-5-phosphate 26.7 4.2E+02 0.014 25.1 12.0 50 171-220 31-89 (295)
129 1i60_A IOLI protein; beta barr 26.5 3.9E+02 0.013 24.7 13.1 50 171-220 15-69 (278)
130 3huu_A Transcription regulator 25.8 1.8E+02 0.0063 27.7 8.1 104 87-239 20-128 (305)
131 2g0t_A Conserved hypothetical 25.5 4E+02 0.014 27.3 10.9 104 181-290 166-279 (350)
132 2ywr_A Phosphoribosylglycinami 25.5 2E+02 0.0068 27.2 8.1 96 90-202 2-98 (216)
133 3qc0_A Sugar isomerase; TIM ba 25.3 2.2E+02 0.0075 26.6 8.4 48 171-218 19-66 (275)
134 1nns_A L-asparaginase II; amid 25.0 4.5E+02 0.015 26.5 11.1 49 168-218 62-112 (326)
135 2him_A L-asparaginase 1; hydro 24.9 94 0.0032 32.1 6.0 50 168-218 84-135 (358)
136 1jak_A Beta-N-acetylhexosamini 24.5 3.2E+02 0.011 29.4 10.4 160 93-267 108-321 (512)
137 3mxt_A Pantothenate synthetase 24.4 95 0.0032 31.2 5.7 51 253-304 18-80 (285)
138 3bbl_A Regulatory protein of L 24.2 47 0.0016 31.7 3.4 103 88-239 3-109 (287)
139 3bq9_A Predicted rossmann fold 24.0 4E+02 0.014 28.5 10.6 37 90-128 174-212 (460)
140 3trh_A Phosphoribosylaminoimid 23.9 57 0.0019 30.4 3.6 48 168-221 46-93 (169)
141 3h5t_A Transcriptional regulat 23.8 47 0.0016 33.1 3.4 56 173-239 118-173 (366)
142 3obi_A Formyltetrahydrofolate 23.5 3.3E+02 0.011 27.1 9.5 122 55-204 61-186 (288)
143 3ors_A N5-carboxyaminoimidazol 23.0 54 0.0018 30.4 3.3 49 168-222 43-91 (163)
144 1nu0_A Hypothetical protein YQ 22.7 46 0.0016 29.7 2.7 28 199-226 42-69 (138)
145 3kuu_A Phosphoribosylaminoimid 22.3 55 0.0019 30.6 3.2 48 168-221 52-99 (174)
146 3bil_A Probable LACI-family tr 22.3 2.2E+02 0.0077 27.9 8.1 88 88-219 65-152 (348)
147 1vdr_A DHFR, dihydrofolate red 22.2 41 0.0014 30.3 2.3 50 171-227 81-130 (162)
148 1o4v_A Phosphoribosylaminoimid 22.1 57 0.002 30.7 3.3 48 168-222 53-101 (183)
149 3oow_A Phosphoribosylaminoimid 22.0 56 0.0019 30.4 3.2 47 168-221 45-92 (166)
150 3szu_A ISPH, 4-hydroxy-3-methy 21.8 1.1E+02 0.0037 31.5 5.5 45 170-216 213-257 (328)
151 3u0h_A Xylose isomerase domain 21.6 3.4E+02 0.012 25.3 9.0 49 171-219 17-69 (281)
152 1pzx_A Hypothetical protein AP 21.3 3.9E+02 0.013 26.3 9.6 159 141-317 44-226 (289)
153 3nrb_A Formyltetrahydrofolate 21.2 4E+02 0.014 26.4 9.6 99 88-205 87-186 (287)
154 3h75_A Periplasmic sugar-bindi 21.1 5.7E+02 0.019 24.7 13.3 30 89-118 3-33 (350)
155 3sho_A Transcriptional regulat 21.0 2.1E+02 0.0072 25.4 7.0 48 168-219 25-72 (187)
156 3g85_A Transcriptional regulat 20.6 1.6E+02 0.0054 27.7 6.4 32 87-118 9-41 (289)
157 4evq_A Putative ABC transporte 20.5 5.8E+02 0.02 24.6 11.1 142 86-265 13-157 (375)
158 3tqr_A Phosphoribosylglycinami 20.4 2.3E+02 0.008 26.9 7.4 96 87-203 3-102 (215)
159 1x60_A Sporulation-specific N- 20.2 1.5E+02 0.0052 22.9 5.1 47 167-213 18-73 (79)
160 1oi4_A Hypothetical protein YH 20.1 1.5E+02 0.0052 27.0 5.9 150 86-251 20-191 (193)
161 1xmp_A PURE, phosphoribosylami 20.0 54 0.0018 30.6 2.6 48 168-221 51-98 (170)
No 1
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=100.00 E-value=8e-140 Score=1153.51 Aligned_cols=536 Identities=48% Similarity=0.862 Sum_probs=512.0
Q ss_pred cCCHhhhhhcCCCCCCccccccc---cceecCCCCCCCCChhHHHhhCCcccCCCeeEEecCCcccccCCCCCcEEEEEe
Q 042388 20 VYSELQTSRLNVSLPLPSVLKKT---FNVVDGAPSSASGNPEEIKKLFPKLFGQPSARLVECDPKACSMENKSLKIGVVL 96 (567)
Q Consensus 20 ~~s~l~~~r~~~~p~lp~~l~~~---~~~~~~~~~~~~~~~~~i~~~fp~~~~~p~~~~~~~~~~~~~~~~~~~~IgIv~ 96 (567)
++|+||++|++|+|+||++|++. +++++++++++..++++|+++|||||++|+++|+++.. .....+++||||++
T Consensus 2 ~~s~l~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~p~~~~~~~~~--~~~~~~~~~igIlt 79 (555)
T 2f48_A 2 NTSLFKQERQKYIPKLPNILKKDFNNISLVYGENTEAIQDRQALKEFFKNTYGLPIISFTEGES--SLSFSKALNIGIIL 79 (555)
T ss_dssp --CHHHHHHTTCCCCCCGGGGSCGGGEEEEECCCCCCSSCHHHHHHHTTTTTTCCCEEEEESCC--CCSCCSCCEEEEEE
T ss_pred CCCHHHHhhhcCCCCCCHHHhCCccceeeecCCcccCccCHHHHHHhCccccCCCcEEEecCCc--ccccCCCcEEEEEC
Confidence 68999999999999999999986 79999999999999999999999999999999998752 12467789999999
Q ss_pred cCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChHHHHHHH
Q 042388 97 SGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPEQFKQAE 176 (567)
Q Consensus 97 sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e~~~~~~ 176 (567)
||||||||||||+|+++++++.+++++||||++||+||+++++++|+++.++.|+++|||++|||+|+++.+++++++++
T Consensus 80 sGGdaPGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGstiLGssR~~~~~~e~~~~~~ 159 (555)
T 2f48_A 80 SGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKAL 159 (555)
T ss_dssp BSSCCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTCEEEECHHHHHHHTTCCSSTTTCCBCCCCCSHHHHHHHH
T ss_pred cCCCcHhHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCEEECCHHHHHHHHhCCCCcCCCcCCCCCCCHHHHHHHH
Confidence 99999999999999999998888999999999999999999999999999999999999669999999998999999999
Q ss_pred HHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHh
Q 042388 177 ETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDAR 256 (567)
Q Consensus 177 ~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~ni~~da~ 256 (567)
++|++++||+||+||||||+++|+.|++++++++++++||||||||||||+++.+|+|||||||+++++++|++|++||.
T Consensus 160 ~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTIDNDl~~t~id~tiGFdTA~~~~~~aId~i~~da~ 239 (555)
T 2f48_A 160 FVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAM 239 (555)
T ss_dssp HHHHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCSSCCCCEEHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcCCCCCChhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred hcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCch
Q 042388 257 STGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVILIPEGLIDFIP 336 (567)
Q Consensus 257 S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~EGl~~~ip 336 (567)
|++++|||||||||+||||||+||||++||+|||||++++++++|++++++||+.|++|+.+|++|+|||||||+++++|
T Consensus 240 s~~~rv~iVEvMGR~aG~lAl~a~LA~gad~ilIPE~~~~~~~~L~~~~~~i~~~i~~r~~~gk~~~IIvVaEG~~~~~~ 319 (555)
T 2f48_A 240 STKKYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGLIEFIP 319 (555)
T ss_dssp HHCCCEEEEEECCTTSCHHHHHHHHHHCCSEECCHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEETTGGGTSH
T ss_pred HcCCcEEEEEeCCcCHHHHHHHHHhhcCCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCCccccc
Confidence 99989999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCC-------cCCCcc-hhhhcchhhHHHHhhchHHHHHHhh---hcCCCCCCcccchhhhHHHHH
Q 042388 337 EVQQLIAELNEILAHDG-------VDQDGA-WKKKLKSQSQELFELFPKAIQEQLL---LERDPHGNVQVAKIETEKMLI 405 (567)
Q Consensus 337 e~~~li~el~~~~~~~~-------~~~~g~-~~~~ls~~~~~lf~~lp~~i~~ql~---~~rD~~Gn~~ls~i~te~lL~ 405 (567)
+++.|++|+|++++++. .+++|. +..+|++|++++|.+||..|++||+ .++|+|||+|+++|+||++|+
T Consensus 320 ~~~~li~el~~~l~~~~~~~~~l~~~~~~~~~~~~Ls~~~~~~~~~lp~~i~~~l~~~~~~~D~~Gn~~l~~i~t~~~L~ 399 (555)
T 2f48_A 320 EVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFI 399 (555)
T ss_dssp HHHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHSCHHHHHHHHTSCHHHHHHHHHHHHTCCTTCCCCCTTSCHHHHHH
T ss_pred hHHHHHHHHhhhhhcccccccccccccchhhhhhccchhhhhhhccchHHHHHHhhccccccCCCCCEeeccccHHHHHH
Confidence 99999999999987641 123344 5578999999999999999999987 789999999999999999999
Q ss_pred HHHHHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEec
Q 042388 406 QMVETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGNLGEPVEEWTVGG 485 (567)
Q Consensus 406 ~lV~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~l~~~~~~w~~~~ 485 (567)
++|+++|++++.++.|+++|++|+|+|||+||||.||+|||.||++||+.|++++++|.||+|++++|++.++|+|++.+
T Consensus 400 ~~v~~~l~~~~~~~~~~~~~~~r~~~lGy~qRgg~PS~~Dr~la~~lG~~Av~~~~~G~tG~mv~i~~~~~~~~~w~~~~ 479 (555)
T 2f48_A 400 EMIQSRLNDMKKRGEYKGSFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWIAGG 479 (555)
T ss_dssp HHHHHHHHHHHTTTCCCSCCCEEEEEESHHHHTSCCCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCGGGCEEEE
T ss_pred HHHHHHHHHHhcccCcccceeeeeccCCcchhCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccceEEEe
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHhHHHHHHhcCCcccccchhhhccCCchhHHHHHhhccccccCceeCCccccccCCCC--CCCcceeEecC
Q 042388 486 TALTSLMDVERRHGKFKPVIKKAMVELEGIPFKTFASLREDWTIKNLYVSPGPIQFVGPNA--NDINHTLKLEL 557 (567)
Q Consensus 486 vPL~~~~~~e~~~g~~~p~i~~~~v~l~~~~f~~~~~~r~~w~~~d~y~~pGpiq~~g~~~--~~~~~tl~~e~ 557 (567)
+||++|||+|+++|+.+|+|+|++|||+|++|+.|+++|++|+++|+||+||||||+||.+ |++++||.||+
T Consensus 480 vPl~~~~n~ek~~g~~~p~i~~~~Vdl~~~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~~~tl~~e~ 553 (555)
T 2f48_A 480 VPLTMLMNMEERYGEKKPVIKKALVDLEGRPFKEFVKNRDKWALNNLYLYPGPVQYFGSSEIVDEITETLKLEL 553 (555)
T ss_dssp EEGGGGEEEEEETTEEEEEECCCCCCTTSHHHHHHHHHHHHHHHSCCCCCCCCCCCSSCHHHHTCCCHHHHHHT
T ss_pred eeHHHHhhhhhhcCccccceeeeeeCCCCHHHHHHHHHHHHhhhcCcccCCCCEeecCccccccCCCceeeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999997
No 2
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=100.00 E-value=4.8e-84 Score=691.33 Aligned_cols=343 Identities=20% Similarity=0.289 Sum_probs=294.5
Q ss_pred CcEEEEEecCCCCchhhHHHHHHHHHHHHhcC-CCEEEEEeCCcccccCCCEEEcCcc---ccccccccCCcccccccCC
Q 042388 89 SLKIGVVLSGGQAPGGHNVISGIFDYLQERTN-GSKLYGFKGGPAGIMKCKYVELSTE---YIYPYRNQGGFDMICSGRD 164 (567)
Q Consensus 89 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~-~~~v~Gf~~G~~GLl~~~~~eLt~~---~v~~~~n~GG~~~LGS~R~ 164 (567)
.+||||++||||||||||||+|+++.+..... ..+||||++||+||+++++++|+.. +++.++++||+ +|||+|+
T Consensus 3 ~kni~VltsGGdapGmNa~Ir~vv~~a~~~g~~~~~V~Gi~~G~~GLl~~~~~~l~~~~~~~v~~i~~~GGt-iLGSsR~ 81 (419)
T 3hno_A 3 AKNAFYAQSGGVTAVINASAAGVIEAARKQSGKIGRIYAGRNGIIGALTEDLIDTGQESDAAISALRYTPSG-AFGSCRY 81 (419)
T ss_dssp CCEEEEEECSSCCSSHHHHHHHHHHHHHHHCSSCCCEEEETTTHHHHHTTCEEEGGGSCHHHHHHGGGCCSC-TTCCCCC
T ss_pred CceEEEEccCCChHHHHHHHHHHHHHHHHcCCCCcEEEEEeCChHHhCCCCcccCccccHHHHHHHHcCCCc-eecCCCC
Confidence 47999999999999999999999999764332 2399999999999999999999765 88999999998 9999999
Q ss_pred CC----CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhH
Q 042388 165 KI----ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTA 240 (567)
Q Consensus 165 k~----~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA 240 (567)
++ .+++++++++++|++++||+||+||||||+++|++|+++++++|++++||||||||||||.+|| +|||||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkTIDNDl~~tD--~t~GFdTA 159 (419)
T 3hno_A 82 KLKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITD--CCPGFGSV 159 (419)
T ss_dssp C------CHHHHHHHHHHHHHTTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSS--SCTTHHHH
T ss_pred CccccccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEecccccCCCcCCC--CCCCchHH
Confidence 87 5899999999999999999999999999999999999999999999999999999999999988 59999999
Q ss_pred HHHHHHHHHHHHHHHhhcCC---eeEEEEecCCCCcHHHHHhhhh-----cCCcEEEECCcchhhhcchHhHHHHHHHHH
Q 042388 241 CKIFSEMIGNVMTDARSTGK---YYHFVRLMGRAASHITLECALQ-----THPNITIIGEEVAAKKQTLKNVTDYITDII 312 (567)
Q Consensus 241 ~k~~ae~I~ni~~da~S~~k---~~~fVevMGR~ag~LAL~~aLa-----t~pnivlIpEe~~~~~~tL~~iv~~i~d~I 312 (567)
+++++++|+++.+|++|+++ +|||||||||+||||||+|||| ++||+|||||++++ .+.+++.|
T Consensus 160 ~~~~~~~i~~~~~d~~ss~~sh~rv~iVEvMGR~aG~lAl~aglA~~~~~~gad~ilIPE~~f~--------~~~~~~~i 231 (419)
T 3hno_A 160 AKYIAVSTLEASFDVASMSATSTKVFVLEVMGRHAGWIAAAGGLASSPEREIPVVILFPEISFD--------KQKFLAKV 231 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCCEEEEEECCSSCCHHHHGGGGGCCSSSCCCEEEECTTSCCC--------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEcCCcChhHHHHHHHHhcccCCCCceEEEeCCCCCC--------HHHHHHHH
Confidence 99999999999999988776 7999999999999999999999 79999999999984 24566777
Q ss_pred HHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCC
Q 042388 313 CKRSEAGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGN 392 (567)
Q Consensus 313 ~~R~~~gk~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn 392 (567)
++|.+. ++|+||+||||+.+ .+|+++ .++ ..+|+|||
T Consensus 232 ~~~~~~-~~~~iIvVaEG~~~----------------------~~g~~i------------------~~~--~~~D~~G~ 268 (419)
T 3hno_A 232 DSCVKK-FGYCSVVVSEGVKG----------------------DDGKFL------------------SDQ--GVRDAFGH 268 (419)
T ss_dssp HHHHHH-HSCEEEEEETTCCC----------------------SSSCC--------------------------------
T ss_pred HHHHHh-CCCEEEEEeCCCcc----------------------cCCcch------------------hcc--cccccccC
Confidence 777766 67999999999975 233322 111 35799999
Q ss_pred cccchhhhHHHHHHHHHHHHHHhhhcCCcCcccccceecCcccccCCC--CCHHHHHHHHHHHHHHHHHHHcCCCceEEE
Q 042388 393 VQVAKIETEKMLIQMVETELNKMKQKGAYKGQFNGQSHFFGYEGRCGL--PTNFDANYCYALGYAAAALLHAGKTGLISS 470 (567)
Q Consensus 393 ~~ls~i~te~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~--PS~fD~~~a~~lG~~Av~li~~g~tG~mv~ 470 (567)
++++++ ++.|+++|++++ .+++|.++|||+||||. ||+|||.||++||..|++++++|.+|+|++
T Consensus 269 ~~l~gi--~~~la~~i~~~~-----------g~~~R~~~lGh~QRgg~p~ps~~Dr~la~~lG~~Av~~~~~G~~g~mv~ 335 (419)
T 3hno_A 269 AQLGGV--APVVASMVKEGL-----------GLKYHWGVADYLQRAARHIASKTDVEQAYAMGQAAVEFAVQGHNSVMPT 335 (419)
T ss_dssp ---CCS--HHHHHHHHHHHH-----------CCCEEEEECTHHHHSCGGGCBHHHHHHHHHHHHHHHHHHHHTCCSEEEE
T ss_pred cccCcH--HHHHHHHHHHHh-----------CCceEEcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence 999998 677888887765 25789999999999998 899999999999999999999999999999
Q ss_pred EecCCCCccceEEeccchHhHHHHHHhc
Q 042388 471 VGNLGEPVEEWTVGGTALTSLMDVERRH 498 (567)
Q Consensus 471 i~~l~~~~~~w~~~~vPL~~~~~~e~~~ 498 (567)
+++.+.++|+|++..+||.++++.+|+.
T Consensus 336 ~~~~~~~~y~~~~~~vpl~~~~~~~k~v 363 (419)
T 3hno_A 336 IERISARPYQWKVGMAQLSQVANVEKMM 363 (419)
T ss_dssp EEEEEC-CCEEEEEEEEHHHHSSCCCCC
T ss_pred EECCCCCccccEEEEeeHHHHhcccCCC
Confidence 9999999999999999999999876643
No 3
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=100.00 E-value=1.4e-80 Score=643.88 Aligned_cols=300 Identities=28% Similarity=0.355 Sum_probs=274.1
Q ss_pred CcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCC-CC
Q 042388 89 SLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDK-IE 167 (567)
Q Consensus 89 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k-~~ 167 (567)
.+||||++|||||||||++|+|+++++. +.+.+||||++||+||+++++++|++++++.|+++||+ +|||+|++ +.
T Consensus 2 ~k~i~IltsGGdapGmNaair~vv~~a~--~~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt-~LGssR~~~~~ 78 (320)
T 1pfk_A 2 IKKIGVLTSGGDAPGMNAAIRGVVRSAL--TEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGT-FLGSARFPEFR 78 (320)
T ss_dssp CCEEEEEECSSCCTTHHHHHHHHHHHHH--HTTCEEEEESTHHHHHHTTCEEEECSGGGTTCTTCCSC-TTCCCCCGGGG
T ss_pred CCEEEEEccCCCchhHHHHHHHHHHHHH--HCCCEEEEEecChHHhcCCCEEECCHHHHhhHHhCCCC-eeccCCCCCCC
Confidence 4799999999999999999999999964 46789999999999999999999999999999999997 99999998 67
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHH
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEM 247 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~ 247 (567)
+++++++++++|++++||+||+||||||+++|++|+|+ +++||||||||||||++|| +|||||||+++++++
T Consensus 79 ~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td--~t~GfdTA~~~~~~a 150 (320)
T 1pfk_A 79 DENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEM------GFPCIGLPGTIDNDIKGTD--YTIGFFTALSTVVEA 150 (320)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEBCTTCCCTTCS--CCBTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHhh------CCCEEEEeccccCCCCCCc--CCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999985 6899999999999999988 499999999999999
Q ss_pred HHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEE
Q 042388 248 IGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVILI 327 (567)
Q Consensus 248 I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli 327 (567)
|++++.+|.|++ +|||||+|||+||||||+||||++||+|||||++++ .+++++.|++|.++|++|+||+|
T Consensus 151 id~i~~ta~s~~-rv~iVEvMGR~aG~lAl~a~lA~ga~~iliPE~~~~--------~~~i~~~i~~~~~~gk~~~iIvv 221 (320)
T 1pfk_A 151 IDRLRDTSSSHQ-RISVVEVMGRYCGDLTLAAAIAGGCEFVVVPEVEFS--------REDLVNEIKAGIAKGKKHAIVAI 221 (320)
T ss_dssp HHHHHHHHHHHT-CEEEEEECCTTCCHHHHHHHHHTTCSEEECTTSCCC--------HHHHHHHHHHHHHTTCSCEEEEE
T ss_pred HHHHHHHHhcCC-CEEEEEeCCcCHHHHHHHHHHhcCCCEEEeCCCCCC--------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 999998888886 699999999999999999999999999999999873 35677888999999999999999
Q ss_pred eCCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHH
Q 042388 328 PEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIETEKMLIQM 407 (567)
Q Consensus 328 ~EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~l 407 (567)
+||+.. .+.|+++
T Consensus 222 aEG~~~-------------------------------------------------------------------~~~la~~ 234 (320)
T 1pfk_A 222 TEHMCD-------------------------------------------------------------------VDELAHF 234 (320)
T ss_dssp ESSSSC-------------------------------------------------------------------HHHHHHH
T ss_pred eCCcch-------------------------------------------------------------------HHHHHHH
Confidence 999731 1123444
Q ss_pred HHHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEeccc
Q 042388 408 VETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGNLGEPVEEWTVGGTA 487 (567)
Q Consensus 408 V~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~l~~~~~~w~~~~vP 487 (567)
+++++ .|++|+++|||+||||.||+|||.||++||..|++++.+|.+|+|+++++.+ +..+|
T Consensus 235 i~~~~-----------~~~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~g~mv~~~~~~-------~~~~p 296 (320)
T 1pfk_A 235 IEKET-----------GRETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGRCVGIQNEQ-------LVHHD 296 (320)
T ss_dssp HHHHH-----------SSCEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHHTCCSEEEEEETTE-------EEEEE
T ss_pred HHHHh-----------CCeEEEEcCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCE-------EEEEE
Confidence 44432 4788999999999999999999999999999999999999999999999874 88999
Q ss_pred hHhHH-H
Q 042388 488 LTSLM-D 493 (567)
Q Consensus 488 L~~~~-~ 493 (567)
|.+++ +
T Consensus 297 l~~~~~~ 303 (320)
T 1pfk_A 297 IIDAIEN 303 (320)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 99998 5
No 4
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=100.00 E-value=1.3e-80 Score=643.87 Aligned_cols=302 Identities=27% Similarity=0.431 Sum_probs=273.9
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCC-CCC
Q 042388 90 LKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDK-IET 168 (567)
Q Consensus 90 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k-~~~ 168 (567)
+||||++|||||||||++|+|+++++. +.+.+||||++||+||+++++++|++++++.|+++||+ +|||+|++ +.+
T Consensus 2 k~i~IltsGGdapGmNaair~vv~~a~--~~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt-~LGssR~~~~~~ 78 (319)
T 1zxx_A 2 KRIGILTSGGDAPGMNAAVRAVTRVAI--ANGLEVFGIRYGFAGLVAGDIFPLESEDVAHLINVSGT-FLYSARYPEFAE 78 (319)
T ss_dssp CEEEEEECSSCCTTHHHHHHHHHHHHH--TTTCEEEEECTHHHHHHHTCEEECCGGGGTTCTTCCSC-TTCCCCCGGGTS
T ss_pred CEEEEEccCCCchhHHHHHHHHHHHHH--HCCCEEEEEccChHHHcCCCEEECCHHHHHhHHhCCCc-ccccCCCCccCC
Confidence 799999999999999999999999964 56889999999999999999999999999999999997 99999998 678
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHHH
Q 042388 169 PEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMI 248 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I 248 (567)
++++++++++|++++||+||+||||||+++|++|+++ +++||||||||||||++|| +|||||||+++++++|
T Consensus 79 ~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td--~t~GfdTA~~~~~~ai 150 (319)
T 1zxx_A 79 EEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRH------GFNSIGLPGTIDNDIPYTD--ATIGYDTACMTAMDAI 150 (319)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEEETTCCCTTCS--CCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHh------CCCEEEEeecccCCCCCCc--CCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999985 6899999999999999988 4999999999999999
Q ss_pred HHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEEe
Q 042388 249 GNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVILIP 328 (567)
Q Consensus 249 ~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~ 328 (567)
++++.+|.|++ +|||||+|||+||||||+||||++||+|||||+++ + .+++++.|++|+++|++|+||+|+
T Consensus 151 d~i~~ta~s~~-rv~iVEvMGR~aG~lAl~a~lA~ga~~iliPE~~~----~----~~~i~~~i~~~~~~gk~~~iIvva 221 (319)
T 1zxx_A 151 DKIRDTASSHH-RVFIVNVMGRNCGDIAMRVGVACGADAIVIPERPY----D----VEEIANRLKQAQESGKDHGLVVVA 221 (319)
T ss_dssp HHHHHHHHHTT-CEEEEEECCTTCCHHHHHHHHHTTCSEEECTTSCC----C----HHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred HHHHHHHhcCC-CEEEEEeCCCCHHHHHHHHHHhcCCCEEEeCCCCC----C----HHHHHHHHHHHHHcCCCcEEEEEe
Confidence 99987777765 79999999999999999999999999999999987 3 356778889999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHHH
Q 042388 329 EGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIETEKMLIQMV 408 (567)
Q Consensus 329 EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~lV 408 (567)
||+.+ .+.|++++
T Consensus 222 EG~~~-------------------------------------------------------------------~~~l~~~i 234 (319)
T 1zxx_A 222 EGVMT-------------------------------------------------------------------ADQFMAEL 234 (319)
T ss_dssp TTTCC-------------------------------------------------------------------HHHHHHHH
T ss_pred CCcCh-------------------------------------------------------------------HHHHHHHH
Confidence 99732 11233333
Q ss_pred HHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEeccch
Q 042388 409 ETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGNLGEPVEEWTVGGTAL 488 (567)
Q Consensus 409 ~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~l~~~~~~w~~~~vPL 488 (567)
++ + ..|++|+++|||+||||.||+|||.||++||..|++++++|.+|+|+++++.+ +..+||
T Consensus 235 ~~----~-------~~~~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~g~mv~~~~~~-------~~~~pl 296 (319)
T 1zxx_A 235 KK----Y-------GDFDVRANVLGHMQRGGTPTVSDRVLASKLGSEAVHLLLEGKGGLAVGIENGK-------VTSHDI 296 (319)
T ss_dssp HH----S-------SCCCEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEETTE-------EEEEEH
T ss_pred HH----h-------hCceEEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCE-------EEEEEH
Confidence 33 2 25789999999999999999999999999999999999999999999999874 889999
Q ss_pred HhHHHHHH
Q 042388 489 TSLMDVER 496 (567)
Q Consensus 489 ~~~~~~e~ 496 (567)
.++++.+|
T Consensus 297 ~~~~~~~k 304 (319)
T 1zxx_A 297 LDLFDESH 304 (319)
T ss_dssp HHHTTCCC
T ss_pred HHHHhcCC
Confidence 99887543
No 5
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=100.00 E-value=1.9e-80 Score=670.76 Aligned_cols=338 Identities=25% Similarity=0.307 Sum_probs=298.5
Q ss_pred CCCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccC---CCEEEcCccccccccccCCccccccc
Q 042388 86 ENKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMK---CKYVELSTEYIYPYRNQGGFDMICSG 162 (567)
Q Consensus 86 ~~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~---~~~~eLt~~~v~~~~n~GG~~~LGS~ 162 (567)
..+.+||||++|||||||||+||+|+++++...+...+||||++||+||++ +++++|+|++++.|+++||+ +|||+
T Consensus 94 ~~~~~rIgIltsGGdaPGmNaaIravv~~a~~~~g~~~V~Gi~~G~~GLl~~~~~~~~~L~~~~V~~i~~~GGT-iLGTs 172 (487)
T 2hig_A 94 NPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGT-ILGSS 172 (487)
T ss_dssp CGGGCEEEEEECSSCCTTHHHHHHHHHHHHHHHHCCSEEEECSTGGGGGSHHHHTTCEEECHHHHTTGGGSSSC-SSCCC
T ss_pred cCCCcEEEEEecCCCcchhhHHHHHHHHHHHHhCCCcEEEEEccCHHHhhhccCCCEEECCHHHHHHHHhCCCC-eeccC
Confidence 345689999999999999999999999998654555599999999999975 69999999999999999997 99999
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHH
Q 042388 163 RDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACK 242 (567)
Q Consensus 163 R~k~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k 242 (567)
|++.. .++++++|++++||+||+||||||+++|+.|++++.++|++++||||||||||||+++| +|||||||++
T Consensus 173 R~~~~----~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD--~T~GFdTAv~ 246 (487)
T 2hig_A 173 RGPQD----PKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSH--RTFGFQTAVE 246 (487)
T ss_dssp CSCCC----HHHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSS--CCTTHHHHHH
T ss_pred CCCCC----HHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCC--CCCCHHHHHH
Confidence 99862 45999999999999999999999999999999999999999999999999999999888 5999999999
Q ss_pred HHHHHHHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcC-CcEEEECCcchhhhcchHhHHHHHHHHHHHHHHcCCC
Q 042388 243 IFSEMIGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTH-PNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYN 321 (567)
Q Consensus 243 ~~ae~I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~-pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~ 321 (567)
+++++|++|++||.|++++|||||||||+||||||+||||++ ||+|||||+++ +| +.+++.|++|.+ +++
T Consensus 247 ~~~eaId~i~~tA~Sh~~rv~vVEVMGR~aG~LAl~agLA~g~ad~ilIPE~p~----~l----~~i~~~i~~r~~-~k~ 317 (487)
T 2hig_A 247 KAVQAIRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPI----SE----QEVMSLLERRFC-HSR 317 (487)
T ss_dssp HHHHHHHHHHHHHHTSTTEEEEEEECCSSCCHHHHHHHHHHTCCSEEECTTSCC----CH----HHHHHHHHHHTT-SCS
T ss_pred HHHHHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHhhCCCCEEEeCCCCC----CH----HHHHHHHHHHHh-cCC
Confidence 999999999999999987899999999999999999999999 99999999987 44 356777888876 799
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcccchhhhH
Q 042388 322 YGVILIPEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIETE 401 (567)
Q Consensus 322 ~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te 401 (567)
|+||||+||+...+. .. ...+|++||++++++ +
T Consensus 318 ~~IIvVaEGag~~~~------------------------------------~~---------~~~~Da~G~~~l~~i--~ 350 (487)
T 2hig_A 318 SCVIIVAEGFGQDWG------------------------------------RG---------SGGYDASGNKKLIDI--G 350 (487)
T ss_dssp EEEEEEETTTTGGGC------------------------------------CC-----------CBCTTSCBCCCCH--H
T ss_pred cEEEEEeCCCccccc------------------------------------cc---------ccccccccCcchhHH--H
Confidence 999999999842100 00 125799999999987 6
Q ss_pred HHHHHHHHHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccce
Q 042388 402 KMLIQMVETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGNLGEPVEEW 481 (567)
Q Consensus 402 ~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~l~~~~~~w 481 (567)
++|+++|+++++++..+. .+|++|+..+||+||||.||+|||.||++||..|++++++|.+|+|+++++.
T Consensus 351 ~~l~~~i~~~~~~~g~~~---~~f~~R~~~lGh~QRgg~Psa~Dr~la~~lG~~AV~~l~~G~tg~mVgi~~~------- 420 (487)
T 2hig_A 351 VILTEKVKAFLKANKSRY---PDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAMRHN------- 420 (487)
T ss_dssp HHHHHHHHHHHHTTTTTS---SSCEEEEECCHHHHHSSCCCHHHHHHHHHHHHHHHHHHHTTEESEEEEEETT-------
T ss_pred HHHHHHHHHHHhhcCccc---cccceEEccCCcCccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECC-------
Confidence 788888888886543211 1468899999999999999999999999999999999999999999999986
Q ss_pred EEeccchHhHHHHHH
Q 042388 482 TVGGTALTSLMDVER 496 (567)
Q Consensus 482 ~~~~vPL~~~~~~e~ 496 (567)
++..+||.++++.++
T Consensus 421 ~i~~vPl~ev~~~~k 435 (487)
T 2hig_A 421 NYILVPIKVATSVRR 435 (487)
T ss_dssp EEEEEEHHHHTTEEE
T ss_pred EEEEEEHHHHHccCC
Confidence 388999999986433
No 6
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=100.00 E-value=1.3e-77 Score=622.83 Aligned_cols=303 Identities=26% Similarity=0.365 Sum_probs=272.2
Q ss_pred CcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCC-CC
Q 042388 89 SLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDK-IE 167 (567)
Q Consensus 89 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k-~~ 167 (567)
.||||||||||||||||++|+|+++++ .+.+.+||||++||+||+++++++|+++.++.++++||+ +|||+|.+ +.
T Consensus 1 mkrIgIltsGG~~pG~Na~ir~vv~~a--~~~g~~v~Gi~~G~~Gl~~~~~~~l~~~~v~~i~~~GGt-~lgtsR~~~~~ 77 (319)
T 4a3s_A 1 MKRIGVLTSGGDSPGMNAAVRAVVRKA--IYHDVEVYGIYNGYAGLISGKIEKLELGSVGDIIHRGGT-KLYTARCPEFK 77 (319)
T ss_dssp CCEEEEEEESSCCTTHHHHHHHHHHHH--HHTTCEEEEECSTTHHHHHCCEEEECGGGGTTCTTCCSC-TTCCCCCHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHHHHHH--HHCCCEEEEEecchHHHcCCCeecCCHHHHHhHHhcCCC-ccccCCCCccc
Confidence 479999999999999999999999985 457899999999999999999999999999999999998 99999986 67
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHH
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEM 247 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~ 247 (567)
++|++++++++|++++||+||+||||||+++|++|+|+ .++||||||||||||+++| +|||||||+++++++
T Consensus 78 ~~e~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~l~~~------~i~vigiPkTIDNDl~~td--~t~GfdTA~~~~~~a 149 (319)
T 4a3s_A 78 TVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH------GFPCVGVPGTIDNDIPGTD--FTIGFDTALNTVIDA 149 (319)
T ss_dssp SHHHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHHHHT------TCCEEEEEEETTCCCTTCS--CCEEHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHhcc------CCcEEEeeccccCCCCCCC--CCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999986 5789999999999999988 599999999999999
Q ss_pred HHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHHHHHHHcCCCeEEEEE
Q 042388 248 IGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVILI 327 (567)
Q Consensus 248 I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli 327 (567)
|++++.+|.|+++ |||||+|||+|||||+++|||++||+|||||++++ .+.+++.|+++.++|++|++|+|
T Consensus 150 i~~i~~~a~s~~r-v~ivEvMGR~aG~lA~~a~la~ga~~iliPE~~~~--------~~~~~~~i~~~~~~g~~~~iivv 220 (319)
T 4a3s_A 150 IDKIRDTATSHER-TYVIEVMGRHAGDIALWAGLAGGAESILIPEADYD--------MHEIIARLKRGHERGKKHSIIIV 220 (319)
T ss_dssp HHHHHHHHHHHTC-EEEEEECCTTCCHHHHHHHHHHTCSEEEBTTBCCC--------HHHHHHHHHHHHTTTCCCEEEEE
T ss_pred HHHHHhhhhccCC-eEEEEeCCcchhHHHHHHHhccCCCEEEecCCCCC--------HHHHHHHHHHHHHcCCCceEEEE
Confidence 9999988888765 89999999999999999999999999999999874 35566778888889999999999
Q ss_pred eCCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHH
Q 042388 328 PEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIETEKMLIQM 407 (567)
Q Consensus 328 ~EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~l 407 (567)
+||+... ..+++.
T Consensus 221 aEG~~~~-------------------------------------------------------------------~~~~~~ 233 (319)
T 4a3s_A 221 AEGVGSG-------------------------------------------------------------------VEFGKR 233 (319)
T ss_dssp ETTTCCH-------------------------------------------------------------------HHHHHH
T ss_pred ECCCCcc-------------------------------------------------------------------hHHHHH
Confidence 9998531 012222
Q ss_pred HHHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEeccc
Q 042388 408 VETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGNLGEPVEEWTVGGTA 487 (567)
Q Consensus 408 V~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~tG~mv~i~~l~~~~~~w~~~~vP 487 (567)
+++++ ++++|...+||.||||.||+||+.+|++||..|++++++|.||+|+++++.+ +..+|
T Consensus 234 ~~~~~-----------g~~~r~~~lGh~qRgg~psa~Dr~~a~~lG~~AV~~~~~G~~g~mv~~~~~~-------~~~~p 295 (319)
T 4a3s_A 234 IEEET-----------NLETRVSVLGHIQRGGSPSAADRVLASRLGAYAVELLLEGKGGRCVGIQNNK-------LVDHD 295 (319)
T ss_dssp HHHHH-----------CCCEEEEECGGGGGCSSCCHHHHHHHHHHHHHHHHHHTTTCCSEEEEEETTE-------EEEEE
T ss_pred HHHhC-----------CceEEEcchhHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCE-------EEEEe
Confidence 33332 4678899999999999999999999999999999999999999999999874 78899
Q ss_pred hHhHHHHHH
Q 042388 488 LTSLMDVER 496 (567)
Q Consensus 488 L~~~~~~e~ 496 (567)
|.++++.++
T Consensus 296 l~~~~~~~k 304 (319)
T 4a3s_A 296 IIEILETKH 304 (319)
T ss_dssp HHHHSSSCC
T ss_pred HHHHHhccC
Confidence 999887543
No 7
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=7.7e-74 Score=646.76 Aligned_cols=343 Identities=22% Similarity=0.299 Sum_probs=299.4
Q ss_pred CCCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCC--CEEEcCccccccccccCCcccccccC
Q 042388 86 ENKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKC--KYVELSTEYIYPYRNQGGFDMICSGR 163 (567)
Q Consensus 86 ~~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~--~~~eLt~~~v~~~~n~GG~~~LGS~R 163 (567)
..+++||||++|||||||||++|+++++.+ .+.+.+||||++||+||+++ ++++|++++++.|+++||+ +|||+|
T Consensus 12 ~~~~krIaIltsGGdaPGmNaaIravvr~a--~~~g~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGT-iLGSsR 88 (762)
T 3o8l_A 12 LGVGKAIAVLTSGGDAQGMNAAVRAVVRVG--IFTGARVFFVHEGYQGLVDGGDHIREATWESVSMMLQLGGT-VIGSAR 88 (762)
T ss_dssp TTSSCEEEEECCSSCCTTHHHHHHHHHHHH--HHTTCEEECCSTHHHHHHSCGGGCCBCCSGGGTTCTTCCSC-SSCCCC
T ss_pred cccCcEEEEEccCCCchhHhHHHHHHHHHH--HHCCCEEEEEecChhhhhcCCCcEEECCHHHHHhHHhCCCc-cccCCC
Confidence 456789999999999999999999999874 45789999999999999999 8999999999999999997 999999
Q ss_pred CC-CCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHH-----------------HhcCCCCccEEEecccCcCC
Q 042388 164 DK-IETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAEN-----------------FRSKDMKTRVIGCPKTIDGD 225 (567)
Q Consensus 164 ~k-~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~-----------------~~~~g~~i~VIgVPKTIDND 225 (567)
++ +.+++++++++++|++++||+||+||||||+++|+.|+++ .++++.+++|||||||||||
T Consensus 89 ~~~f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDND 168 (762)
T 3o8l_A 89 CKDFREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDND 168 (762)
T ss_dssp CCGGGSHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCC
T ss_pred CCcccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccC
Confidence 98 5788999999999999999999999999999999988653 34556789999999999999
Q ss_pred CCCCCCCCCCChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHH
Q 042388 226 LKCKEVPTSFGFDTACKIFSEMIGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVT 305 (567)
Q Consensus 226 L~~~~ie~S~GFdTA~k~~ae~I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv 305 (567)
+++|| +|||||||+++++++|++|+.+|.|++| +||||||||+||||||++|||++||+|||||++++. +++
T Consensus 169 l~gTD--~TiGfdTA~~~i~eaid~i~~tA~Sh~R-v~iVEvMGR~aG~LAl~aglA~gad~ilIPE~p~~~-----~~~ 240 (762)
T 3o8l_A 169 FCGTD--MTIGTDSALHRITEIVDAITTTAQSHQR-TFVLEVMGRHCGYLALVTSLSCGADWVFIPECPPDD-----NWE 240 (762)
T ss_dssp CSSCS--CCBTHHHHHHHHHHHHHHHHTTCCSSCC-EEEEEECCSSCCHHHHHHHHHHTCSBCCCTTSCCCS-----SCH
T ss_pred CCCCc--CCcCchhHHHHHHHHHHHHHHhhhcCcc-EEEEEeCCcchhHHHHHHHHhcCCCEEEecCCCCCc-----chH
Confidence 99988 4999999999999999999999998876 799999999999999999999999999999999864 246
Q ss_pred HHHHHHHHHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhh
Q 042388 306 DYITDIICKRSEAGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLL 385 (567)
Q Consensus 306 ~~i~d~I~~R~~~gk~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~ 385 (567)
+++++.|++|.++|++|+||+|+||+.+
T Consensus 241 ~~~~~~i~~~~~~gk~~~iVvVaEGa~d---------------------------------------------------- 268 (762)
T 3o8l_A 241 DHLCRRLSETRTRGSRLNIIIVAEGAID---------------------------------------------------- 268 (762)
T ss_dssp HHHHHHHHHHHHTTCSCCBBCEETTCCC----------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCCceEEEEeCCccC----------------------------------------------------
Confidence 8899999999999999999999999863
Q ss_pred cCCCCCCcccchhhhHHHHHHHHHHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC-
Q 042388 386 ERDPHGNVQVAKIETEKMLIQMVETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGK- 464 (567)
Q Consensus 386 ~rD~~Gn~~ls~i~te~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~- 464 (567)
.+|++.. .+.|+++|++++ .+++|...+||.||||.||+|||.||++||..||+++.+|.
T Consensus 269 ---~~G~~i~-----~~~l~~~i~~~~-----------g~~~R~tvLGh~QRgg~Psa~Dr~lat~lG~~AV~~~~~g~~ 329 (762)
T 3o8l_A 269 ---RNGKPIT-----SEGVKDLVVRRL-----------GYDTRVTVLGHVQRGGTPSAFDRILGSRMGVEAVMALLEGTP 329 (762)
T ss_dssp ---SSSCCCC-----HHHHHHHHHHHT-----------CCCEEEECCCSSTTCSCCCHHHHHHHHHHHHHHHHHHHTCCT
T ss_pred ---CCCCCcH-----HHHHHHHHHHHh-----------CCCcceeecCccccCCCCChHHHHHHHHHHHHHHHHHHcCCC
Confidence 2344332 234555555442 47889999999999999999999999999999999999999
Q ss_pred --CceEEEEecCCCCccceEEeccchHhHHHHHHhcCC---cccccchhhhccCCchhHH
Q 042388 465 --TGLISSVGNLGEPVEEWTVGGTALTSLMDVERRHGK---FKPVIKKAMVELEGIPFKT 519 (567)
Q Consensus 465 --tG~mv~i~~l~~~~~~w~~~~vPL~~~~~~e~~~g~---~~p~i~~~~v~l~~~~f~~ 519 (567)
+|+|+++++.+ +..+||.++++.++...+ .+.| ...+.|.|..|..
T Consensus 330 ~~~~~~v~~~~~~-------i~~~Pl~e~~~~~k~v~~~~~~~~~--~~a~~~rg~~f~~ 380 (762)
T 3o8l_A 330 DTPACVVSLSGNQ-------AVRLPLMECVQVTKDVTKAMDEKRF--DEAMKLRGRSFMN 380 (762)
T ss_dssp TSCCEEEEEETTE-------EEEEEHHHHHHHHHHHHHHHHSSCH--HHHHHHHCTHHHH
T ss_pred CCceEEEEEECCE-------EEEEEHHHHHhccCCCChhhccchH--HHHHHhhCchHHH
Confidence 89999999875 889999999988776443 3333 3344666777663
No 8
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-72 Score=637.19 Aligned_cols=343 Identities=21% Similarity=0.268 Sum_probs=296.2
Q ss_pred CCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCC---EEEcCccccccccccCCcccccccCC
Q 042388 88 KSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCK---YVELSTEYIYPYRNQGGFDMICSGRD 164 (567)
Q Consensus 88 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~---~~eLt~~~v~~~~n~GG~~~LGS~R~ 164 (567)
..+||||++|||||||||++|+++++++. +.+.+||||++||+||++++ +.+|+|++++.|+++||+ +|||+|+
T Consensus 2 ~~krIgIltsGGdapGmNaaIravvr~a~--~~g~~V~Gi~~G~~GL~~~~~~~i~~l~~~~V~~i~~~GGT-iLGTsR~ 78 (766)
T 3o8o_B 2 PQKAIAVMTSGGDAPGMNSNVRAIVRSAI--FKGCRAFVVMEGYEGLVRGGPEYIKEFHWEDVRGWSAEGGT-NIGTARC 78 (766)
T ss_dssp CCCEEEEEEESSCCTTHHHHHHHHHHHHH--HHTCEEEEETTHHHHHHSCSTTTEEEECGGGGTTGGGCCSC-TTCCCCC
T ss_pred CCcEEEEEeeCCCchhHHHHHHHHHHHHH--HCCCEEEEEeCChHHHhcCCcccEEECCHHHHhhHHhCCCc-eeccCCC
Confidence 35899999999999999999999999864 45789999999999999986 789999999999999998 9999999
Q ss_pred C-CCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHH-----------------hcCCCCccEEEecccCcCCC
Q 042388 165 K-IETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENF-----------------RSKDMKTRVIGCPKTIDGDL 226 (567)
Q Consensus 165 k-~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~-----------------~~~g~~i~VIgVPKTIDNDL 226 (567)
+ +.+++.+.+++++|++++||+||+||||||+++|++|++++ .+++.+++||||||||||||
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPkTIDNDl 158 (766)
T 3o8o_B 79 MEFKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDM 158 (766)
T ss_dssp SGGGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEBCTTCCC
T ss_pred CcccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEeccccCCC
Confidence 8 45778899999999999999999999999999999987643 23456799999999999999
Q ss_pred CCCCCCCCCChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHH
Q 042388 227 KCKEVPTSFGFDTACKIFSEMIGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTD 306 (567)
Q Consensus 227 ~~~~ie~S~GFdTA~k~~ae~I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~ 306 (567)
++|| +|||||||+++++++|++|..+|.|++| +||||||||+||||||+||||++||+|||||+++ +++++.+
T Consensus 159 ~gTD--~TiGfdTA~~~i~eaid~i~~tA~Sh~R-vfvVEvMGR~aG~LAl~aglA~gAd~ilIPE~p~----~~~~~~~ 231 (766)
T 3o8o_B 159 STTD--ATIGAYSALDRICKAIDYVEATANSHSR-AFVVEVMGRNCGWLALLAGIATSADYIFIPEKPA----TSSEWQD 231 (766)
T ss_dssp TTCS--CCBTHHHHHHHHHHHHHHHHHHHHHTTC-EEEEEECCTTCCHHHHHHHHHHTCSEEECTTCCC----CTTHHHH
T ss_pred CCCC--CCCChhHHHHHHHHHHHHHHhhhhccCc-eEEEEcCCcchhHHHHHHHHhcCCCEEEccCCCC----ChHHHHH
Confidence 9988 5999999999999999999999999876 7999999999999999999999999999999987 6677889
Q ss_pred HHHHHHHHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhc
Q 042388 307 YITDIICKRSEAGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLE 386 (567)
Q Consensus 307 ~i~d~I~~R~~~gk~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~ 386 (567)
+|++.+++|...||+|+||||+||+.+. +
T Consensus 232 ~v~~~i~~~~~~gk~~~IVvVaEGa~~~----------------------~----------------------------- 260 (766)
T 3o8o_B 232 QMCDIVSKHRSRGKRTTIVVVAEGAIAA----------------------D----------------------------- 260 (766)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEETTCBCT----------------------T-----------------------------
T ss_pred HHHHHHHHHHhcCCCceEEEEeCCcccc----------------------c-----------------------------
Confidence 9999999999999999999999998641 1
Q ss_pred CCCCCCcccchhhhHHHHHHHHHHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC-
Q 042388 387 RDPHGNVQVAKIETEKMLIQMVETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKT- 465 (567)
Q Consensus 387 rD~~Gn~~ls~i~te~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~t- 465 (567)
|+.. +.+.++++ ++++ ..+++|...|||.||||.||+|||.+|++||..|++++.+|.+
T Consensus 261 ----~~~~-----~~~~l~~~----i~~~-------~g~~~R~tvLGh~QRGG~Psa~DR~lAt~~G~~AV~~~~~g~~~ 320 (766)
T 3o8o_B 261 ----LTPI-----SPSDVHKV----LVDR-------LGLDTRITTLGHVQRGGTAVAYDRILATLQGLEAVNAVLESTPD 320 (766)
T ss_dssp ----SCBC-----CHHHHHHH----HHHT-------TCCCEEEEECGGGGTCSCCCHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred ----CCcc-----hHHHHHHH----HHHH-------hCCceeEcccChhhcCCCCChhhHHHHHHHHHHHHHHHHcCCCC
Confidence 1110 12234444 4333 2488999999999999999999999999999999999999987
Q ss_pred --ceEEEEecCCCCccceEEeccchHhHHHHHHhcCC---cccccchhhhccCCchhHHH
Q 042388 466 --GLISSVGNLGEPVEEWTVGGTALTSLMDVERRHGK---FKPVIKKAMVELEGIPFKTF 520 (567)
Q Consensus 466 --G~mv~i~~l~~~~~~w~~~~vPL~~~~~~e~~~g~---~~p~i~~~~v~l~~~~f~~~ 520 (567)
|+|+++++.+ +..+||.+.+...+...+ .|.| ..-++|.|..|...
T Consensus 321 ~~~~mv~~~~~~-------i~~~pl~~~~~~~k~v~~~~~~~~~--~~a~~lr~~~f~~~ 371 (766)
T 3o8o_B 321 TPSPLIAVNENK-------IVRKPLMESVKLTKAVAEAIQAKDF--KRAMSLRDTEFIEH 371 (766)
T ss_dssp SCCEEEEESSSC-------EEEEEHHHHHHHHHHHHHHHHTTCH--HHHHHHSCTTHHHH
T ss_pred CCceEEEEECCE-------EEEEEHHHHHhccCccHHHHhcCCH--HHHHHccCHHHHHH
Confidence 8999999987 789999998876665332 2333 34557888777654
No 9
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-72 Score=635.08 Aligned_cols=343 Identities=20% Similarity=0.268 Sum_probs=294.8
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCC--CEEEcCccccccccccCCcccccccCC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKC--KYVELSTEYIYPYRNQGGFDMICSGRD 164 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~--~~~eLt~~~v~~~~n~GG~~~LGS~R~ 164 (567)
.+++||||++|||||||||+||+++++++. +.+.+||||++||+||+++ ++.+|+|++++.|+++||+ +|||+|+
T Consensus 3 ~~~krIgIltsGGdaPGmNaaIravvr~a~--~~g~~V~Gi~~G~~GL~~~~~~i~~l~~~~V~~i~~~GGT-iLGTsR~ 79 (787)
T 3o8o_A 3 QKKKKIAVMTSGGDSPGMNAAVRAVVRTGI--HFGCDVFAVYEGYEGLLRGGKYLKKMAWEDVRGWLSEGGT-LIGTARS 79 (787)
T ss_dssp --CCEEEEEEESSCCTTHHHHHHHHHHHHH--HTTCEEEEETTHHHHHHHCTTSEEECCGGGGTTGGGCCSC-TTCCCCC
T ss_pred CCCcEEEEEeeCCCchhHHHHHHHHHHHHH--HCCCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCc-eeccCCC
Confidence 346899999999999999999999999864 5689999999999999998 7999999999999999998 9999999
Q ss_pred C-CCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHH-----------------HhcCCCCccEEEecccCcCCC
Q 042388 165 K-IETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAEN-----------------FRSKDMKTRVIGCPKTIDGDL 226 (567)
Q Consensus 165 k-~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~-----------------~~~~g~~i~VIgVPKTIDNDL 226 (567)
+ +.+++++.+++++|++++||+||+||||||+++|..|+++ ..+++.+++||||||||||||
T Consensus 80 ~~f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPkTIDNDl 159 (787)
T 3o8o_A 80 MEFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDM 159 (787)
T ss_dssp SGGGSHHHHHHHHHHHHHHTEEEEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEEESSCCC
T ss_pred CcccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEeecCcCCC
Confidence 8 4678899999999999999999999999999999988753 223456899999999999999
Q ss_pred CCCCCCCCCChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHH
Q 042388 227 KCKEVPTSFGFDTACKIFSEMIGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTD 306 (567)
Q Consensus 227 ~~~~ie~S~GFdTA~k~~ae~I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~ 306 (567)
++|| +|||||||+++++++|++|..+|.|++| |||||||||+||||||+||||++||+|||||+++ +++++.+
T Consensus 160 ~gTD--~TiGfdTAl~~i~eaid~i~~tA~Sh~R-vfvVEVMGR~aG~LAl~agLA~gAd~ilIPE~p~----~~~~~~~ 232 (787)
T 3o8o_A 160 SGTD--STIGAYSALERICEMVDYIDATAKSHSR-AFVVEVMGRHCGWLALMAGIATGADYIFIPERAV----PHGKWQD 232 (787)
T ss_dssp TTSS--CCEEHHHHHHHHHHHHHHHHHHHHHTTC-EEEEEECCTTCCHHHHHHHHHTTCSEEECGGGCB----CTTTHHH
T ss_pred CCCC--CCCCcHHHHHHHHHHHHHHHhhhhccCc-eEEEEcCCcchhHHHHHHHHhhCCCEEEeCCCCC----ChHHHHH
Confidence 9988 5999999999999999999999998765 8999999999999999999999999999999987 5667788
Q ss_pred HHHHHHHHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhc
Q 042388 307 YITDIICKRSEAGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLE 386 (567)
Q Consensus 307 ~i~d~I~~R~~~gk~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~ 386 (567)
+|++.+++|...|++|+||||+||+.+. +
T Consensus 233 ~v~~~i~~~~~~gk~~~IVvVaEGa~~~----------------------~----------------------------- 261 (787)
T 3o8o_A 233 ELKEVCQRHRSKGRRNNTIIVAEGALDD----------------------Q----------------------------- 261 (787)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEETTCBBT----------------------T-----------------------------
T ss_pred HHHHHHHHHHhcCCCceEEEEeCCCccc----------------------c-----------------------------
Confidence 9999999999999999999999998641 1
Q ss_pred CCCCCCcccchhhhHHHHHHHHHHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC-
Q 042388 387 RDPHGNVQVAKIETEKMLIQMVETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKT- 465 (567)
Q Consensus 387 rD~~Gn~~ls~i~te~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~t- 465 (567)
|+.. +.+.+++++++ + .|++|...|||.||||.||+|||.+|++||..|++++++|.+
T Consensus 262 ----~~~~-----~~~~~~~~i~~-~-----------g~~~R~tvLGh~QRGG~Psa~DRilAtrlG~~AV~~l~~g~~~ 320 (787)
T 3o8o_A 262 ----LNPV-----TANDVKDALIE-L-----------GLDTKVTILGHVQRGGTAVAHDRWLATLQGVDAVKAVLEFTPE 320 (787)
T ss_dssp ----SCBC-----CHHHHHHHHHH-H-----------TCCEEEEECGGGGTCSCCCHHHHHHHHHHHHHHHHHHHTCCSS
T ss_pred ----Ccch-----hHHHHHHHHHH-h-----------CCcceeeccCHhhcCCCCChHHHHHHHHHHHHHHHHHHcCCCC
Confidence 1110 11223333333 1 378899999999999999999999999999999999999987
Q ss_pred --ceEEEEecCCCCccceEEeccchHhHHHHHHhcCC---cccccchhhhccCCchhHHH
Q 042388 466 --GLISSVGNLGEPVEEWTVGGTALTSLMDVERRHGK---FKPVIKKAMVELEGIPFKTF 520 (567)
Q Consensus 466 --G~mv~i~~l~~~~~~w~~~~vPL~~~~~~e~~~g~---~~p~i~~~~v~l~~~~f~~~ 520 (567)
|+|+++++.+ +..+||.+.+...+...+ .|.| ..-++|.|..|...
T Consensus 321 ~~~~mVg~~~~~-------i~~~pl~~~~~~~k~v~~~~~~~~~--~~a~~lr~~~f~~~ 371 (787)
T 3o8o_A 321 TPSPLIGILENK-------IIRMPLVESVKLTKSVATAIENKDF--DKAISLRDTEFIEL 371 (787)
T ss_dssp CCCEEEEESSSS-------EEEEEHHHHHHHHHHHHHHHHTTCH--HHHHHTSCTTHHHH
T ss_pred CCCeEEEEECCE-------EEEEEHHHHHhccCCchHhhhcCCH--HHHHhccCHHHHHH
Confidence 7999999986 789999998876655332 2333 44568888877754
No 10
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=2.9e-72 Score=633.87 Aligned_cols=328 Identities=21% Similarity=0.293 Sum_probs=290.8
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKI 166 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~ 166 (567)
.+++||||++|||||||||++|+++++++. +.+.+||||++||+||+++++++|++++++.|.++||+ +|||+|.++
T Consensus 398 ~~~~~IgIltsGGdapGmNaaIravv~~~~--~~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt-~LGTsR~~~ 474 (762)
T 3o8l_A 398 SGSYTVAVMNVGAPAAGMNAAVRSTVRIGL--IQGNRVLVVHDGFEGPAKGQIEEAGWSYVGGWTGQGGS-KLGSKRTLP 474 (762)
T ss_dssp SSCCEEEEEEESSCCTTHHHHHHHHHHHHH--HHTCEEEEESSTTHHHHHTCEEECCTTTTSSCTTCCSC-SSCEECCCS
T ss_pred ccCCEEEEEecCCCcHHHHHHHHHHHHHHH--HCCCEEEEEeccccccccCCEEECCHHHhhhHHhCCCc-eeecCCCCc
Confidence 457899999999999999999999999865 45789999999999999999999999999999999998 999999876
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCC-CCccEEEecccCcCCCCCCCCCCCCChHhHHHHHH
Q 042388 167 ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKD-MKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFS 245 (567)
Q Consensus 167 ~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g-~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~a 245 (567)
++++++++++|++++||+||+||||||+++|.+|++++.+.. .+++||||||||||||++|| +|||||||+++++
T Consensus 475 --~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD--~TiGfdTA~~~~~ 550 (762)
T 3o8l_A 475 --KKSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSD--FSVGADTALNTIC 550 (762)
T ss_dssp --GGGHHHHHHHHHHTTCCCEEEEESHHHHHHHHHHHHHHHHCSTTCSCEEEEEBCTTCCCTTCS--CCBTHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhccccCCCEEeeccccCCCCCCCc--CCCChHHHHHHHH
Confidence 578999999999999999999999999999999999987764 57999999999999999988 4999999999999
Q ss_pred HHHHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHHHHHHHcCCCeEEE
Q 042388 246 EMIGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVI 325 (567)
Q Consensus 246 e~I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvI 325 (567)
++|++|+.+|.|++++|||||||||+||||||+||||++||+|||||+++ +++++.+.+.. +++|.+.+++|++|
T Consensus 551 ~aid~i~~tA~ssh~rv~vVEvMGR~aG~lAl~aglA~gad~ilIPE~~~----~l~~~~~~i~~-~~~r~~~~~~~~iV 625 (762)
T 3o8l_A 551 TTCDRIKQSAAGTKRRVFIIETMGGYCGYLATMAGLAAGADAAYIFEEPF----TIRDLQANVEH-LVQKMKTTVKRGLV 625 (762)
T ss_dssp HHHHHHTTTTCSSSCEEEEEEECSTTCCHHHHHHHHHTTCSEEECSSSCC----CHHHHHHHHHH-HHHHHTSSCSEEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEEeCCcchhHHHHHHHHhhCCCEEEECCCCC----CHHHHHHHHHH-HHHHHhcCCCceEE
Confidence 99999999998777889999999999999999999999999999999987 77888777665 67888899999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcccchhhhHHHHH
Q 042388 326 LIPEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIETEKMLI 405 (567)
Q Consensus 326 li~EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~ 405 (567)
||+||+.... +.+++.
T Consensus 626 vvaEga~~~~----------------------------------------------------------------~~~~~~ 641 (762)
T 3o8l_A 626 LRNEKCNENY----------------------------------------------------------------TTDFIF 641 (762)
T ss_dssp EEETTSCSSS----------------------------------------------------------------CHHHHH
T ss_pred EEECCCCccc----------------------------------------------------------------hHHHHH
Confidence 9999985310 012233
Q ss_pred HHHHHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcC---------------CCceEEE
Q 042388 406 QMVETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAG---------------KTGLISS 470 (567)
Q Consensus 406 ~lV~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g---------------~tG~mv~ 470 (567)
++++++ . +..|++|...|||.||||.||+|||.+|++||..|++++.+| .+|+|++
T Consensus 642 ~~~~~~----~-----~~~~d~R~tvLGH~QRGG~Pta~DRilatr~g~~Av~~l~~g~~~~~~~g~~~~~~~~~~~~vg 712 (762)
T 3o8l_A 642 NLYSEE----G-----KGIFDSRKNVLGHMQQGGSPTPFDRNFATKMGAKAMNWMAGKIKESYRNGRIFANTPDSGCVLG 712 (762)
T ss_dssp HHHHHH----T-----TTTCEEEEEECCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHTTBCSSSBCCCSSTTEEEEE
T ss_pred HHHHhh----c-----cCCceEEEeeCchhhCCCCCCHHHHHHHHHHHHHHHHHHHhCccccccccccccccCCceEEEE
Confidence 333322 1 136899999999999999999999999999999999999987 7999999
Q ss_pred EecCCCCccceEEeccchHhHHH---HHHhcCCcccccc
Q 042388 471 VGNLGEPVEEWTVGGTALTSLMD---VERRHGKFKPVIK 506 (567)
Q Consensus 471 i~~l~~~~~~w~~~~vPL~~~~~---~e~~~g~~~p~i~ 506 (567)
+++.+ +..+||.++.+ ++.|.++..+|.+
T Consensus 713 ~~~~~-------i~~~pl~e~~~~~d~~~r~~~~~~w~~ 744 (762)
T 3o8l_A 713 MRKRA-------LVFQPVTELQNQTDFEHRIPKEQWWLK 744 (762)
T ss_dssp EETTE-------EEEEEHHHHGGGEETTTTEESSCGGGG
T ss_pred EECCE-------EEEEEHHHHhhccchhhcCCCCchHHh
Confidence 99986 88999999865 5567788888864
No 11
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=3.6e-72 Score=639.80 Aligned_cols=344 Identities=20% Similarity=0.264 Sum_probs=294.5
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCC---EEEcCccccccccccCCcccccccC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCK---YVELSTEYIYPYRNQGGFDMICSGR 163 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~---~~eLt~~~v~~~~n~GG~~~LGS~R 163 (567)
..++||||++|||||||||+||+++++++. +.+.+||||++||+||++++ +.+|+|++++.|+++||+ +|||+|
T Consensus 179 ~~~krIgIlTsGGdaPGmNAaIRaVVr~a~--~~g~~V~Gi~~Gy~GLl~g~~~~i~~l~~~~V~~i~~~GGT-iLGSsR 255 (941)
T 3opy_B 179 PVRKTIGVMTSGGDSPGMNPFVRAVVRAGI--YKGCKVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGT-NIGTAR 255 (941)
T ss_dssp -CCCCEEEEECSSCCTTHHHHHHHHHHHHH--HTTCCEEEETTHHHHHHHCSTTTEEEECGGGGTTTTTCCSC-SSCCCC
T ss_pred ccCCEEEEEeeCcCchhHHHHHHHHHHHHH--HCCCEEEEEeCChHHhccCCcceEEECCHHHHHhHHhCCCc-eeccCC
Confidence 347899999999999999999999999864 56889999999999999986 899999999999999998 999999
Q ss_pred CCC-CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHH-----------------HhcCCCCccEEEecccCcCC
Q 042388 164 DKI-ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAEN-----------------FRSKDMKTRVIGCPKTIDGD 225 (567)
Q Consensus 164 ~k~-~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~-----------------~~~~g~~i~VIgVPKTIDND 225 (567)
++. .+++.+.+++++|++++||+||+||||||+++|+.|+++ ..+++.+++|||||||||||
T Consensus 256 ~~~f~~~~~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPkTIDND 335 (941)
T 3opy_B 256 CKEFRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDND 335 (941)
T ss_dssp CSGGGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCC
T ss_pred CCcccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEeecccCC
Confidence 984 577889999999999999999999999999999988753 23346689999999999999
Q ss_pred CCCCCCCCCCChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHH
Q 042388 226 LKCKEVPTSFGFDTACKIFSEMIGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVT 305 (567)
Q Consensus 226 L~~~~ie~S~GFdTA~k~~ae~I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv 305 (567)
|++|| +|||||||+++++++|++|..+|.|++| |||||||||+||||||+||||++||+|||||+++ +++++.
T Consensus 336 l~gTD--~TiGfdTAv~~i~eaId~I~~tA~Sh~R-vfvVEVMGR~aG~LAl~agLA~GAd~IlIPE~p~----~~~~~~ 408 (941)
T 3opy_B 336 MSSTD--ATIGAFSSLDRICRAIDYIDATANSHSR-AFIVEVMGRHCGWLGLLAGLATSADYILIPEKPA----SSREWQ 408 (941)
T ss_dssp CSSCS--SCEEHHHHHHHHHHHHHHHHSCC-CCSE-EEEEECCCSSCCHHHHHHHHHTTCSEEECTTSCC----CSSCHH
T ss_pred CCCCC--CCCChHHHHHHHHHHHHHHHhhhhccCc-eEEEEcCCCcccHHHHHHHHhcCCCEEEECCCCC----ChHHHH
Confidence 99988 5999999999999999999999988755 8999999999999999999999999999999987 566678
Q ss_pred HHHHHHHHHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhh
Q 042388 306 DYITDIICKRSEAGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLL 385 (567)
Q Consensus 306 ~~i~d~I~~R~~~gk~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~ 385 (567)
++|++.+++|...||+|+||||+||+.+. +
T Consensus 409 ~~v~~~i~~~~~~gk~~~IVVVAEGa~~~----------------------~---------------------------- 438 (941)
T 3opy_B 409 DQMCDIVGKHRARGKRKTIVIVAEGAISN----------------------D---------------------------- 438 (941)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEECTTCBCT----------------------T----------------------------
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeCCcccc----------------------c----------------------------
Confidence 89999999999999999999999998641 1
Q ss_pred cCCCCCCcccchhhhHHHHHHHHHHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 042388 386 ERDPHGNVQVAKIETEKMLIQMVETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKT 465 (567)
Q Consensus 386 ~rD~~Gn~~ls~i~te~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~t 465 (567)
|+.. +.+.++ ++++++ ..+++|...+||.||||.||+|||.+|++||..||+++++|.+
T Consensus 439 -----~~~i-----~~~~l~----~~i~~~-------~g~d~R~tvLGhiQRGG~Psa~DRilAtrlG~~AV~~l~~g~~ 497 (941)
T 3opy_B 439 -----LSPI-----SCDQVK----DVLVNR-------LGLDTRVTTLGHVQRGGTAVAFDRIYATLQGVEAVNAVLECDA 497 (941)
T ss_dssp -----CCBC-----CHHHHH----HHHHHT-------SCCEEEEEECGGGGTCSCCCHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred -----CCcc-----hHHHHH----HHHHHH-------hCCceeecccChhhcCCCCChhhHHHHHHHHHHHHHHHHcCCC
Confidence 1111 122333 444433 2478999999999999999999999999999999999999987
Q ss_pred ---ceEEEEecCCCCccceEEeccchHhHHHHHHhcCC---cccccchhhhccCCchhHHH
Q 042388 466 ---GLISSVGNLGEPVEEWTVGGTALTSLMDVERRHGK---FKPVIKKAMVELEGIPFKTF 520 (567)
Q Consensus 466 ---G~mv~i~~l~~~~~~w~~~~vPL~~~~~~e~~~g~---~~p~i~~~~v~l~~~~f~~~ 520 (567)
|+|+++++.+ +..+||.+.+...+...+ .|.| ..-++|.|..|...
T Consensus 498 ~~~g~mVg~~~~~-------iv~~Pl~e~v~~~k~v~~a~~~~~f--~~a~~lr~~~f~~~ 549 (941)
T 3opy_B 498 DTPSPMIAIKEDQ-------ITRVPLVDAVELTQQVAKSIESRNF--KKAISLRDSEFVEH 549 (941)
T ss_dssp TSCCEEEEESSSC-------EEEEEHHHHHHHHHHHHHHHHTTCH--HHHHHHSCHHHHHH
T ss_pred CCCceEEEEECCE-------EEEEEHHHHHhccCCcHHHHhcCCH--HHHHHccCHHHHHH
Confidence 7999999986 889999998876655332 1333 34557888777654
No 12
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=2e-71 Score=631.77 Aligned_cols=344 Identities=22% Similarity=0.257 Sum_probs=294.9
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCC--CEEEcCccccccccccCCcccccccCC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKC--KYVELSTEYIYPYRNQGGFDMICSGRD 164 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~--~~~eLt~~~v~~~~n~GG~~~LGS~R~ 164 (567)
..++||||++|||||||||+||+++++++. +.+.+||||++||+||+++ ++.+|+|++++.|+++||+ +|||+|+
T Consensus 208 ~~~krIaIlTSGGdaPGmNAaIRaVVr~a~--~~G~~V~Gi~~Gy~GLl~g~~~i~~L~~~~V~~i~~~GGT-iLGTsR~ 284 (989)
T 3opy_A 208 EGKKKIAIITSGGDAPGMNAAVRAVTRAGI--FYGCKVYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGGT-IIGTARC 284 (989)
T ss_dssp CCSEEEEEEECSSCCTTHHHHHHHHHHHHH--HTTEEEEEECTHHHHHHSCSTTEEEECTTTTTTGGGCCSC-SSCCCCS
T ss_pred ccCCEEEEEeeCCCchhHHHHHHHHHHHHH--HCCCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCc-cccCCCC
Confidence 346899999999999999999999999864 5688999999999999998 5999999999999999997 9999999
Q ss_pred C-CCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHH-------hc----------CCCCccEEEecccCcCCC
Q 042388 165 K-IETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENF-------RS----------KDMKTRVIGCPKTIDGDL 226 (567)
Q Consensus 165 k-~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~-------~~----------~g~~i~VIgVPKTIDNDL 226 (567)
+ +.+++++++++++|++++||+||+||||||+++|++|++++ .+ .+.+++||||||||||||
T Consensus 285 ~~f~~~e~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPkTIDNDl 364 (989)
T 3opy_A 285 KEFRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDM 364 (989)
T ss_dssp SSTTSHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCC
T ss_pred CcccchhHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEeecccCCC
Confidence 8 46788999999999999999999999999999999998653 22 246799999999999999
Q ss_pred CCCCCCCCCChHhHHHHHHHHHHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHH
Q 042388 227 KCKEVPTSFGFDTACKIFSEMIGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTD 306 (567)
Q Consensus 227 ~~~~ie~S~GFdTA~k~~ae~I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~ 306 (567)
+++|+ |||||||+++++++|++|..+|.|++ +|||||||||+||||||+||||++||+|||||+++ +++++.+
T Consensus 365 ~gTD~--TiGFdTAl~~i~eaId~I~~TA~Sh~-RvfVVEVMGR~aG~LAl~agLA~GAd~IlIPE~pf----~l~~~~~ 437 (989)
T 3opy_A 365 CGTDS--TIGAYSSLERIIELVDYIDATAASHS-RAFVVEVMGRHCGWLGLMSGIATGADYIFIPERPP----SESNWKD 437 (989)
T ss_dssp TTCSC--CEEHHHHHHHHHHHHHHHHSSCCCTT-EEEEEECCCSSCTHHHHHHHHHHTCSEEECTTSCC----CTTTHHH
T ss_pred CCCCC--CCChhhHHHHHHHHHHHHHhhhhccC-ceEEEEcCCCchhHHHHHHHHhcCCCEEEeCCCCC----ChHHHHH
Confidence 99985 99999999999999999999998875 58999999999999999999999999999999997 5667788
Q ss_pred HHHHHHHHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhc
Q 042388 307 YITDIICKRSEAGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLE 386 (567)
Q Consensus 307 ~i~d~I~~R~~~gk~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~ 386 (567)
+|++.+++|..+|++|+||||+||+.+. +
T Consensus 438 ~l~~~i~k~~~~Gk~~~IVVVAEGa~~~----------------------~----------------------------- 466 (989)
T 3opy_A 438 DLKKVCLRHREKGRRKTTVIVAEGAIDD----------------------Q----------------------------- 466 (989)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECTTCBCT----------------------T-----------------------------
T ss_pred HHHHHHHHHHhcCCCceEEEEeCCcccc----------------------c-----------------------------
Confidence 8999999998999999999999998641 1
Q ss_pred CCCCCCcccchhhhHHHHHHHHHHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC-
Q 042388 387 RDPHGNVQVAKIETEKMLIQMVETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKT- 465 (567)
Q Consensus 387 rD~~Gn~~ls~i~te~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~t- 465 (567)
|+. + +. +.+++.+++ ..+++|...+||.||||.||+|||.||++||..||+++++|.+
T Consensus 467 ----~~~----i-~~----~~l~~~l~~--------~G~dtR~tvLGHiQRGG~Psa~DRilAtrlG~~AV~~l~~g~~~ 525 (989)
T 3opy_A 467 ----LNP----I-TS----EEVKDVLVE--------IGLDTRITRLGHVQRGGAPCAFDRFLATVQGVDAVRAVLESTPA 525 (989)
T ss_dssp ----SCB----C-CH----HHHHHHHHT--------TTCEEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred ----ccc----c-hH----HHHHHHHHH--------hCcchhhhhhhHHHcCCCCChhhHHHHHHHHHHHHHHHHcCCCC
Confidence 110 0 01 122333332 1478999999999999999999999999999999999999985
Q ss_pred --ceEEEEecCCCCccceEEeccchHhHHHHHHhcCC---cccccchhhhccCCchhHHHH
Q 042388 466 --GLISSVGNLGEPVEEWTVGGTALTSLMDVERRHGK---FKPVIKKAMVELEGIPFKTFA 521 (567)
Q Consensus 466 --G~mv~i~~l~~~~~~w~~~~vPL~~~~~~e~~~g~---~~p~i~~~~v~l~~~~f~~~~ 521 (567)
|+|+++++.+ +..+||.+.+...+...+ .|.| ...++|.|..|...-
T Consensus 526 ~~g~mVgl~~~~-------iv~vPl~e~v~~~k~V~~a~~~k~f--~~a~~lr~~~F~~~~ 577 (989)
T 3opy_A 526 IPSPVISILENK-------IVRQPLVESVAQTKTVSAAIEAKDF--DKALQLRDQEFATSY 577 (989)
T ss_dssp SCCEEEEESSSS-------EEEEEHHHHHHHHHHHHHHHHTTCH--HHHHHTSCHHHHHHH
T ss_pred CCCeEEEEECCE-------EEEEEHHHHHhccCCchHhhhccCH--HHHHhccChHHHHHH
Confidence 8999999986 889999998876665332 2333 455688888877543
No 13
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-70 Score=619.73 Aligned_cols=340 Identities=19% Similarity=0.218 Sum_probs=289.6
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCccccc-CCCEEEcCccccccccccCCcccccccCCC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIM-KCKYVELSTEYIYPYRNQGGFDMICSGRDK 165 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl-~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k 165 (567)
.+++||||++||||||||||||+|+++++. +.+++||||++||+||+ ++++++|++++++.|+++||+ +|||+|++
T Consensus 391 ~~~~~IgIltsGGdapGmNaaIravv~~a~--~~g~~v~Gi~~G~~GL~~~~~~~~L~~~~v~~i~~~GGt-~LGTsR~~ 467 (787)
T 3o8o_A 391 SDRLNIGIVHVGAPSAALNAATRAATLYCL--SHGHKPYAIMNGFSGLIQTGEVKELSWIDVENWHNLGGS-EIGTNRSV 467 (787)
T ss_dssp SCCCEEEEEEESSCCSSHHHHHHHHHHHHH--HHTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSC-TTCCBCCC
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHHHHHHH--HCCCEEEEEccChhhhCCCCCEEECCHHHHhhhhcCCCc-eeccCCCC
Confidence 457899999999999999999999999864 45799999999999999 899999999999999999997 99999987
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCC-CCccEEEecccCcCCCCCCCCCCCCChHhHHHHH
Q 042388 166 IETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKD-MKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIF 244 (567)
Q Consensus 166 ~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g-~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ 244 (567)
+. +++++++++|++++||+||+||||||+++|+.|++++.+.+ ++++||||||||||||++||+ |||||||++++
T Consensus 468 ~~--~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vIgiPkTIDNDl~gTD~--t~GfdTA~~~~ 543 (787)
T 3o8o_A 468 AS--EDLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNNVPGTEY--SLGVDTCLNAL 543 (787)
T ss_dssp GG--GCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTTCGGGGSCEEEEEBCTTCCCTTCSC--CBTHHHHHHHH
T ss_pred ch--hhHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCceeecccccccCCCCCcC--CCCchHHHHHH
Confidence 63 47889999999999999999999999999999999876543 579999999999999999885 99999999999
Q ss_pred HHHHHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHHHHHH-H--cCCC
Q 042388 245 SEMIGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRS-E--AGYN 321 (567)
Q Consensus 245 ae~I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~-~--~gk~ 321 (567)
+++|++|+.+|.|++++|||||||||+||||||+||||++||+|||||+++ +++++.+.|.....++. + ++++
T Consensus 544 ~eaid~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~ga~~iliPE~~~----~~~~~~~~i~~~~~~~~~~~g~~~~ 619 (787)
T 3o8o_A 544 VNYTDDIKQSASATRRRVFVCEVQGGHSGYIASFTGLITGAVSVYTPEKKI----DLASIREDITLLKENFRHDKGENRN 619 (787)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEEECCTTCTHHHHHHHHTTTCSEEECSSSCC----CHHHHHHHHHHHHHHHHHCCSCSSC
T ss_pred HHHHHHHHHHhhccCCcEEEEEeCCCCccHHHHHHHHhcCCCEEEeCCCCC----CHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 999999999988877889999999999999999999999999999999987 66677666544333322 1 3456
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcccchhhhH
Q 042388 322 YGVILIPEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIETE 401 (567)
Q Consensus 322 ~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te 401 (567)
+.+|+++||.... .+.
T Consensus 620 ~~iivvaEg~~~~----------------------------------------------------------------~~~ 635 (787)
T 3o8o_A 620 GKLLVRNEQASSV----------------------------------------------------------------YST 635 (787)
T ss_dssp CEEEEEETTSCSS----------------------------------------------------------------SCH
T ss_pred ceEEEEeCCccCC----------------------------------------------------------------CCH
Confidence 6899999997421 012
Q ss_pred HHHHHHHHHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC-----------------
Q 042388 402 KMLIQMVETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGK----------------- 464 (567)
Q Consensus 402 ~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~----------------- 464 (567)
+.|+++|++++. ..|++|..+|||.||||.||+|||.+|++||..|++++.+|.
T Consensus 636 ~~la~~i~~~~~---------~~~e~R~tvLGhiQRGG~Ps~~DR~lAtr~G~~Av~~l~~~~~~~~~~~~~~~~~~~~~ 706 (787)
T 3o8o_A 636 QLLADIISEASK---------GKFGVRTAIPGHVQQGGVPSSKDRVTASRFAVKCIKFIEQWNKKNEASPNTDAKVLRFK 706 (787)
T ss_dssp HHHHHHHHHHHT---------TSSEEEEEBCGGGGGCSSCCHHHHHHHHHHHHHHHHHHHHHHHTCC-------------
T ss_pred HHHHHHHHHHhC---------CCceeEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhCcccccccccccccccccc
Confidence 345666655532 358999999999999999999999999999999999999876
Q ss_pred ----------------CceEEEEecCCCCccceEEeccchHhHHH----HHHhcCCcccccch-hhhc-cCCchh
Q 042388 465 ----------------TGLISSVGNLGEPVEEWTVGGTALTSLMD----VERRHGKFKPVIKK-AMVE-LEGIPF 517 (567)
Q Consensus 465 ----------------tG~mv~i~~l~~~~~~w~~~~vPL~~~~~----~e~~~g~~~p~i~~-~~v~-l~~~~f 517 (567)
+++|+++++.+ +..+|+.++.+ ++.|.++..+|.+- .+++ |.|++-
T Consensus 707 ~~~~~~~~~~~~~~~~~~~~iG~~~~~-------i~~~p~~~~~~~~~d~~~r~~~~~~w~~~~~~~~~l~~~~~ 774 (787)
T 3o8o_A 707 FDTHGEKVPTVEHEDDSAAVICVNGSH-------VSFKPIANLWENETNVELRKGFEVHWAEYNKIGDILSGRLK 774 (787)
T ss_dssp -------------CGGGEEEEEEETTE-------EEEEEHHHHTTSBCTTTTCSBSCCCCHHHHHHHHHHTTHHH
T ss_pred cccccccccccccCCCceEEEEEECCE-------EEEeeHHHHHhhccchhhCCCcChHHHhHHHHHHHhcCCHH
Confidence 68899999875 88999999764 57778888888753 3333 666643
No 14
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=1.9e-69 Score=617.31 Aligned_cols=329 Identities=19% Similarity=0.244 Sum_probs=283.1
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCccccc-CCCEEEcCccccccccccCCcccccccCCC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIM-KCKYVELSTEYIYPYRNQGGFDMICSGRDK 165 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl-~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k 165 (567)
.+++||||++|||||||||++|+|+++++. +.+.+||||++||+||+ ++++++|++++++.|.++||+ +|||+|++
T Consensus 569 ~~~~rIgIltsGGdapGmNaaIravv~~a~--~~g~~V~Gi~~G~~GL~~~~~~~~L~~~~V~~i~~~GGT-iLGTsR~~ 645 (941)
T 3opy_B 569 EKRKKIAIINVGAPAGGMNSAVYSMATYCM--SRGHVPYAIHNGFSGLARHESVRSINWLDIEGWGSLGGS-EIGTNRTL 645 (941)
T ss_dssp GGCCEEEEEEESSCCTTHHHHHHHHHHHHH--HHTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSC-SSCEECCC
T ss_pred ccCcEEEEEecCCCcHHHHHHHHHHHHHHH--HCCCEEEEEccchHhhCcCCcEEECCHHHHhChhhCCCc-EeccCCCC
Confidence 357899999999999999999999999864 45789999999999999 799999999999999999997 99999987
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCC-CCccEEEecccCcCCCCCCCCCCCCChHhHHHHH
Q 042388 166 IETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKD-MKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIF 244 (567)
Q Consensus 166 ~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g-~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ 244 (567)
+. ++++++++++|++++||+||+||||||+++|..|+++..+.. ++++||||||||||||++||+ |||||||++++
T Consensus 646 ~~-~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vVGIPkTIDNDl~gTD~--TiGfdTA~~~i 722 (941)
T 3opy_B 646 PN-DADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATISNNVPGTEY--SLGSDTCLNSF 722 (941)
T ss_dssp TT-TSCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHGGGTCGGGCSCEEEEEBCSSCCCTTCSC--CBTHHHHHHHH
T ss_pred cc-cchHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeeccccCCCCCCCC--CCChHHHHHHH
Confidence 64 346889999999999999999999999999999998765442 578999999999999999885 99999999999
Q ss_pred HHHHHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHHHHHHH----cCC
Q 042388 245 SEMIGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSE----AGY 320 (567)
Q Consensus 245 ae~I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~----~gk 320 (567)
+++|++|+.+|.|++++|||||||||+||||||++|||++||+|||||+++ +++++.+.|... +++.. +++
T Consensus 723 ~eaid~i~~tA~ssh~RvfiVEvMGR~aG~LAl~agLA~GAd~ilIPE~~~----~l~~l~~~i~~l-~~~~~~~~g~~~ 797 (941)
T 3opy_B 723 MEYCDVIKQSAAATRNRVFVVEVQGGNSGYIATHAQLACGAQISYVPEEGI----SLAQLEMDINSL-KESFANDQGKTK 797 (941)
T ss_dssp HHHHHHHHHHHHHC-CEEEEEEECSTTCCHHHHHHHHHHTCSEEECTTTCC----CHHHHHHHHHHH-HHHHHTCTTSCC
T ss_pred HHHHHHHHHHhhhcCCcEEEEEeCCcchhHHHHHHHHhhCCCEEEeCCCCC----CHHHHHHHHHHH-HHHHhhhhcCCC
Confidence 999999998888877889999999999999999999999999999999987 666766655333 33333 456
Q ss_pred CeEEEEEeCCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcccchhhh
Q 042388 321 NYGVILIPEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIET 400 (567)
Q Consensus 321 ~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~t 400 (567)
++.+|+++||.... .+
T Consensus 798 ~~~iIvvaEga~~~----------------------------------------------------------------~~ 813 (941)
T 3opy_B 798 SGRLILKSENASKV----------------------------------------------------------------LT 813 (941)
T ss_dssp CCEEEEEEGGGCSS----------------------------------------------------------------SC
T ss_pred CceEEEEeCCccCC----------------------------------------------------------------CC
Confidence 77999999986421 01
Q ss_pred HHHHHHHHHHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC----------------
Q 042388 401 EKMLIQMVETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGK---------------- 464 (567)
Q Consensus 401 e~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~---------------- 464 (567)
...|+++|+++++ ..|++|..++||.||||.||+|||.+|++||..|++++.+|.
T Consensus 814 ~~~la~~i~~~~~---------~g~e~R~tvLGHiQRGG~Psa~DRilAtr~G~~Av~~l~~g~~~~~~~~~~~~~~~~~ 884 (941)
T 3opy_B 814 TEVISTIIDDEAS---------GRFDSKTAIPGHVQQGGIPSPMDRVRASRFAIRAVSFIERHSDRCQTFKNSISFRQTD 884 (941)
T ss_dssp HHHHHHHHHHHHT---------TSSEEEEECCCTTTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCCH
T ss_pred HHHHHHHHHHHhC---------CCceeEEccccccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccccccccccccccc
Confidence 2345666666542 358999999999999999999999999999999999999998
Q ss_pred ----CceEEEEecCCCCccceEEeccchHhHHH----HHHhcCCcccccc
Q 042388 465 ----TGLISSVGNLGEPVEEWTVGGTALTSLMD----VERRHGKFKPVIK 506 (567)
Q Consensus 465 ----tG~mv~i~~l~~~~~~w~~~~vPL~~~~~----~e~~~g~~~p~i~ 506 (567)
+++|+++++.+ +..+|+.++.+ ++.|.++..+|.+
T Consensus 885 ~~~~~~~~vG~~~~~-------i~~~pi~e~~~~~~d~~~r~p~~~~w~~ 927 (941)
T 3opy_B 885 EITSTAVVLGIHKSQ-------LRFTPIRQLYDFESDVPRRMRKNIFWSN 927 (941)
T ss_dssp HHHTTEEEEEECC-C-------EEEEEHHHHHHTSCCTTTTCC-CCSTHH
T ss_pred cCCCceEEEEEECCE-------EEEEEHHHHHhhccchhhcCCcchHHHh
Confidence 89999999987 88999999865 5677888888874
No 15
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-69 Score=609.58 Aligned_cols=328 Identities=21% Similarity=0.273 Sum_probs=283.4
Q ss_pred CCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccC-CCEEEcCccccccccccCCcccccccCCCC
Q 042388 88 KSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMK-CKYVELSTEYIYPYRNQGGFDMICSGRDKI 166 (567)
Q Consensus 88 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~-~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~ 166 (567)
+.+||||++|||||||||++|+++++++. +.+++||||++||+||++ +++.+|++++++.|.++||+ +|||+|+++
T Consensus 392 ~~~~IgIltsGGdapGmNaaIravv~~a~--~~g~~v~Gi~~G~~GL~~~~~~~~l~~~~v~~i~~~GGt-~LGTsR~~~ 468 (766)
T 3o8o_B 392 KRLKIAIVNVGAPAGGINSAVYSMATYCM--SQGHRPYAIYNGWSGLARHESVRSLNWKDMLGWQSRGGS-EIGTNRVTP 468 (766)
T ss_dssp CCCEEEEEEESSCCTTHHHHHHHHHHHHH--HHTCEEEEETTHHHHHHHHCCEEECCGGGGTTGGGCCSC-TTCCCCCCG
T ss_pred cCcEEEEEecCCCcHHHHHHHHHHHHHHH--HCCCEEEEEecChHhhCCCCceEECCHHHHhhHhhCCCc-eEccCCCCC
Confidence 46899999999999999999999999864 457899999999999997 78999999999999999997 999999876
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCC-CCccEEEecccCcCCCCCCCCCCCCChHhHHHHHH
Q 042388 167 ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKD-MKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFS 245 (567)
Q Consensus 167 ~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g-~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~a 245 (567)
. .+++++++++|++++||+||+||||||+++|+.|+++..+.. .+++||||||||||||++||+ |||||||+++++
T Consensus 469 ~-~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~--T~GfdTA~~~~~ 545 (766)
T 3o8o_B 469 E-EADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSNNVPGTEY--SLGSDTALNALM 545 (766)
T ss_dssp G-GGCHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHTTTTTCGGGCSCCCEEEBCTTCCCSSCSC--CBTHHHHHHHHH
T ss_pred c-cchHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeccccccCCCCCCC--CCChhHHHHHHH
Confidence 3 456889999999999999999999999999999998655432 568999999999999999885 999999999999
Q ss_pred HHHHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHHHHHHH----cCCC
Q 042388 246 EMIGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSE----AGYN 321 (567)
Q Consensus 246 e~I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~----~gk~ 321 (567)
++|++|+.+|.|++++|||||||||+||||||++|||++||+|||||+++ +++++.+.|.... ++.. ++++
T Consensus 546 ~aid~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~ga~~ilIPE~~~----~~~~~~~~i~~~~-~~~~~~~~~~~~ 620 (766)
T 3o8o_B 546 EYCDVVKQSASSTRGRAFVVDCQGGNSGYLATYASLAVGAQVSYVPEEGI----SLEQLSEDIEYLA-QSFEKAEGRGRF 620 (766)
T ss_dssp HHHHHHHHHHHHHSSEEEEEEECCTTCCHHHHHHHHHHTCSEEECTTTCC----CHHHHHHHHHHHH-HHHHHHTTCTTC
T ss_pred HHHHHHHHHhhccCCcEEEEEeCCCchhHHHHHHHHhhCCCEEEeCCCCC----CHHHHHHHHHHHH-HHHhhhhccCCC
Confidence 99999999888877889999999999999999999999999999999987 5666665553322 2322 4578
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcccchhhhH
Q 042388 322 YGVILIPEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIETE 401 (567)
Q Consensus 322 ~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te 401 (567)
+.+|+++||.... + +.
T Consensus 621 ~~iivvaEg~~~~--------------------------------------------------------~--------~~ 636 (766)
T 3o8o_B 621 GKLILKSTNASKA--------------------------------------------------------L--------SA 636 (766)
T ss_dssp CEEEEEEGGGCSS--------------------------------------------------------C--------CH
T ss_pred ceEEEEeCCcCCC--------------------------------------------------------C--------cH
Confidence 8999999986320 0 12
Q ss_pred HHHHHHHHHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC-----------------
Q 042388 402 KMLIQMVETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGK----------------- 464 (567)
Q Consensus 402 ~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~----------------- 464 (567)
+.|++++++++. ..|++|..+|||.||||.||+|||.+|++||..|++++.+|.
T Consensus 637 ~~la~~i~~~~~---------~~~e~R~tvLGhiQRGG~Ps~~DR~lAtr~G~~Av~~l~~g~~~~~~~~~~~~~~~~~~ 707 (766)
T 3o8o_B 637 TKLAEVITAEAD---------GRFDAKPAYPGHVQQGGLPSPIDRTRATRMAIKAVGFIKDNQAAIAEARAAEENFNADD 707 (766)
T ss_dssp HHHHHHHHHHHT---------TSCEEEEEBCGGGGGCSSCCHHHHHHHHHHHHHHHHHHHHTSHHHHHHSSSSSTTCCCC
T ss_pred HHHHHHHHHHhC---------CCceEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccccccccccccc
Confidence 345666655432 358999999999999999999999999999999999999999
Q ss_pred -----CceEEEEecCCCCccceEEeccchHhHHH----HHHhcCCcccccc
Q 042388 465 -----TGLISSVGNLGEPVEEWTVGGTALTSLMD----VERRHGKFKPVIK 506 (567)
Q Consensus 465 -----tG~mv~i~~l~~~~~~w~~~~vPL~~~~~----~e~~~g~~~p~i~ 506 (567)
+++|+++++.+ +..+|+.++.+ ++.|.++..+|.+
T Consensus 708 ~~~~~~~~~vG~~~~~-------i~~~pi~~~~~~~~d~~~r~~~~~~w~~ 751 (766)
T 3o8o_B 708 KTISDTAAVVGVKGSH-------VVYNSIRQLYDYETEVSMRMPKVIHWQA 751 (766)
T ss_dssp HHHHTTSEEEECSSSC-------CEEEEHHHHHHHTBCGGGSSBSSCSCHH
T ss_pred ccCCCceEEEEEECCE-------EEEEeHHHHHhhccchhhCCCCChhHHh
Confidence 89999999987 78999999875 4677888888874
No 16
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=3.2e-68 Score=605.58 Aligned_cols=328 Identities=18% Similarity=0.218 Sum_probs=273.3
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCccccc-CCCEEEcCccccccccccCCcccccccCCC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIM-KCKYVELSTEYIYPYRNQGGFDMICSGRDK 165 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl-~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k 165 (567)
.+++||||++||||||||||||+|+++++. +.+.+||||++||+||+ ++++++|++++++.|.++||+ +|||+|.+
T Consensus 596 ~~~~rIgIltsGGdaPGmNAaIravV~~a~--~~g~~V~Gi~~G~~GLl~~~~~~~L~~~~V~~i~~~GGT-iLGTsR~~ 672 (989)
T 3opy_A 596 SSRLNIAIIHVGAPTSALNPATRVATLNSL--AKGHRVFAIRNGFAGLIRHGAVRELNWIDVEDWHNTGGS-EIGTNRSL 672 (989)
T ss_dssp GGCCEEEEEEESSCCTTHHHHHHHHHHHHH--HTTCEEEEETTHHHHHHHHCCEEEECTTTTTTTTTCCSC-SSCCBCCC
T ss_pred cCCceEEEEecCCCCHHHHHHHHHHHHHHH--HCCCEEEEEccChhhhcCCCcEEECCHHHhhCHhhCCCc-EeccCCCC
Confidence 356899999999999999999999999854 56899999999999999 999999999999999999997 99999986
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCC-CCccEEEecccCcCCCCCCCCCCCCChHhHHHHH
Q 042388 166 IETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKD-MKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIF 244 (567)
Q Consensus 166 ~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g-~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ 244 (567)
. .+++++++++|++++||+||+||||||+++|+.|+++..+.+ ++|+||||||||||||+++|+ |||||||++++
T Consensus 673 ~--~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~y~~~~I~vVGIPkTIDNDl~gTD~--TiGFdTAvn~~ 748 (989)
T 3opy_A 673 P--SDDMGTVAYYFQQYKFDGLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNVPGTEY--SLGSDTCLNTL 748 (989)
T ss_dssp G--GGGHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHTTTCGGGCSCEEEEEBCSSCCCTTCSC--CBTHHHHHHHH
T ss_pred c--hhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhCCCcCCcEEeccccccCCCCCCcC--CCChHHHHHHH
Confidence 4 367999999999999999999999999999999999865543 478999999999999999885 99999999999
Q ss_pred HHHHHHHHHHHhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCcchhhhcchHhHHHHHHHHHHHHHH--cC--C
Q 042388 245 SEMIGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSE--AG--Y 320 (567)
Q Consensus 245 ae~I~ni~~da~S~~k~~~fVevMGR~ag~LAL~~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~--~g--k 320 (567)
+++|++|+.+|.|++++|||||||||+||||||+||||++|++|||||+++ +++++.+.|.. +.+|+. +| +
T Consensus 749 ~eaId~i~~tA~ssh~RvfIVEVMGR~aG~LAl~agLA~GAd~ilIPE~~f----~l~~l~~~i~~-l~~~~~~~~g~~~ 823 (989)
T 3opy_A 749 SGYCDAVKQSASASRRRTFVVEVQGGYSGYLASYAGLITGALAVYTPENPI----NLQTVQEDIEL-LTRTYEEDDGKNR 823 (989)
T ss_dssp HHHHHHHHHHTC-CCCSEEEEEECCTTCSHHHHHHHHHHTCSCEECTTSCC----CHHHHHHHHHH-HHHHHTTCC---C
T ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCcchhHHHHHHHHhcCCCEEEeCCCCC----CHHHHHHHHHH-HHHHHHHhccCCc
Confidence 999999999998877789999999999999999999999999999999987 66666665543 334433 33 5
Q ss_pred CeEEEEEeCCCCCCchHHHHHHHHHHHhhhcCCcCCCcchhhhcchhhHHHHhhchHHHHHHhhhcCCCCCCcccchhhh
Q 042388 321 NYGVILIPEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIET 400 (567)
Q Consensus 321 ~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~~~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~t 400 (567)
++++||++||.... + +
T Consensus 824 ~~~IIvvaEga~~~--------------------------------------------------------~--------~ 839 (989)
T 3opy_A 824 SGKIFIHNEKASKV--------------------------------------------------------Y--------T 839 (989)
T ss_dssp CCEEEEEESSSCSS--------------------------------------------------------S--------C
T ss_pred cceEEEEeCCCcCC--------------------------------------------------------C--------C
Confidence 67899999997421 0 1
Q ss_pred HHHHHHHHHHHHHHhhhcCCcCcccccceecCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC----------------
Q 042388 401 EKMLIQMVETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGK---------------- 464 (567)
Q Consensus 401 e~lL~~lV~~~L~~r~~~~~y~~~f~~~~~~~Gy~~R~~~PS~fD~~~a~~lG~~Av~li~~g~---------------- 464 (567)
.+.|++.+ +++. +..|++|..+|||.||||.||+|||.+|++||..|++++.++.
T Consensus 840 ~~~la~~i----~e~~-----~~~~e~R~tvLGHiQRGG~Psa~DRilAtr~G~~Ave~l~~~~~~~~~~~~~~~~~~~~ 910 (989)
T 3opy_A 840 TDLIAAII----GEAG-----KGRFESRTAVPGHVQQGKSPSSIDRVNACRLAIKCCNFIEDANFQVKHNANLSADERHL 910 (989)
T ss_dssp HHHHHHHH----HHTT-----TTTSCEEEECCGGGGGCSSCCHHHHHHHHHHHHHHHHHHTCGGGSCCSBSCCCHHHHHH
T ss_pred HHHHHHHH----HHhc-----CCCceeEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
Confidence 22344444 3332 1358999999999999999999999999999999999999876
Q ss_pred -----------------------CceEEEEecCCCCccceEEeccchHhHH----HHHHhcCCcccccc
Q 042388 465 -----------------------TGLISSVGNLGEPVEEWTVGGTALTSLM----DVERRHGKFKPVIK 506 (567)
Q Consensus 465 -----------------------tG~mv~i~~l~~~~~~w~~~~vPL~~~~----~~e~~~g~~~p~i~ 506 (567)
+.+++++++.. +...|+.+|. +++.|.++..+|.+
T Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~-------~~~~~~~~l~~~~~d~~~r~p~~~~W~~ 972 (989)
T 3opy_A 911 RFFYDDGVKTSAVSGKSSVIDDNTSVVIGIQGSE-------VTFTPVKQLWENETHHKWRKGKNVHWEQ 972 (989)
T ss_dssp TEEEETTEEEETTTCSSCCCCGGGEEEEEEETTE-------EEEEEHHHHHHHSCTTTC----CCCCHH
T ss_pred cccccccccccccccccccCCCCcEEEEEEECCE-------EEEEEHHHhhhhccchhhCCCcChHHHh
Confidence 23466666654 6788999884 46778888888874
No 17
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=88.94 E-value=13 Score=36.25 Aligned_cols=105 Identities=14% Similarity=0.169 Sum_probs=66.8
Q ss_pred CcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCC
Q 042388 89 SLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIET 168 (567)
Q Consensus 89 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~ 168 (567)
..+|||++..-.-|-...++.|+-++++.. +.++.- .+.. .+
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~------------------------~~~~------------~~ 43 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESL--GAKVFV------------------------QSAN------------GN 43 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHT--SCEEEE------------------------EECT------------TC
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEEE------------------------ECCC------------CC
Confidence 468999999888899999999999887653 222210 0011 13
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 169 PEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
.+.....++.+...++||+|+.+-+.+... .+.+.+.+. +++||.+ |.+.....++.++++|-
T Consensus 44 ~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~--~~~~~~~~~--~iPvV~~----~~~~~~~~~~~~V~~D~ 106 (313)
T 3m9w_A 44 EETQMSQIENMINRGVDVLVIIPYNGQVLS--NVVKEAKQE--GIKVLAY----DRMINDADIDFYISFDN 106 (313)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECSSTTSCH--HHHHHHHTT--TCEEEEE----SSCCTTSCCSEEEEECH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCChhhhH--HHHHHHHHC--CCeEEEE----CCcCCCCCceEEEecCH
Confidence 445567788888999999999998765311 122333333 4678765 55555444434677764
No 18
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=85.60 E-value=0.62 Score=46.46 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcC-------CCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecc
Q 042388 172 FKQAEETAKKLD-------LDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPK 220 (567)
Q Consensus 172 ~~~~~~~l~~~~-------id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPK 220 (567)
.+++.+.|++.+ .|.+|++|||||+-.|+... .....+++|+|||-
T Consensus 17 ~~~l~~~l~~~g~~v~~~~~D~vv~lGGDGT~l~aa~~~---~~~~~~~PilGIn~ 69 (272)
T 2i2c_A 17 RLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQY---EERLDEIAFIGIHT 69 (272)
T ss_dssp HHHHHHHHTTSSCEECSSSCSEEEEEESHHHHHHHHHHT---GGGTTTCEEEEEES
T ss_pred HHHHHHHHHHCCCEeCCCCCCEEEEEcCcHHHHHHHHHH---hhcCCCCCEEEEeC
Confidence 445555566654 59999999999998876542 22212578999984
No 19
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=82.74 E-value=33 Score=32.55 Aligned_cols=154 Identities=12% Similarity=0.115 Sum_probs=84.7
Q ss_pred CCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCC
Q 042388 88 KSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIE 167 (567)
Q Consensus 88 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~ 167 (567)
+..+|||++..-.-|-...++.|+-++++.. |.++.-+ +..+
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~------------------------~~~~------------ 45 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERL--GGTAIAL------------------------DAGR------------ 45 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHT--TCEEEEE------------------------ECTT------------
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEEEE------------------------cCCC------------
Confidence 4579999999888888889999999887653 2221100 1111
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHHHHHH
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEM 247 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~ 247 (567)
+.+.....++.+...++|++|+.+.+.+.... ..+.+.+.+ ++||.+= .+..... .++++|-.. ....+
T Consensus 46 ~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~--~~~~~~~~~--iPvV~~~----~~~~~~~--~~V~~D~~~-~g~~~ 114 (291)
T 3l49_A 46 NDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNP--WLQKINDAG--IPLFTVD----TATPHAI--NNTTSNNYS-IGAEL 114 (291)
T ss_dssp CHHHHHHHHHHHHHHCCSEEEEESSCHHHHHH--HHHHHHHTT--CCEEEES----CCCTTCS--EEEEECHHH-HHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCChhhhHH--HHHHHHHCC--CcEEEec----CCCCCcC--ceEecChHH-HHHHH
Confidence 23455677888889999999999887543322 223344444 5677664 3333211 366666432 12222
Q ss_pred HHHHHHHHhhcCCeeEEEEecCCCCcHH------HHHhhhhcCCcEEEECCc
Q 042388 248 IGNVMTDARSTGKYYHFVRLMGRAASHI------TLECALQTHPNITIIGEE 293 (567)
Q Consensus 248 I~ni~~da~S~~k~~~fVevMGR~ag~L------AL~~aLat~pnivlIpEe 293 (567)
...+......+ +.+.|+ .|...... +..-+++.++++-++.++
T Consensus 115 ~~~l~~~~~g~-~~i~~i--~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~ 163 (291)
T 3l49_A 115 ALQMVADLGGK-GNVLVF--NGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPE 163 (291)
T ss_dssp HHHHHHHHTTC-EEEEEE--CSCTTSHHHHHHHHHHHHHHHTCTTEEECSSC
T ss_pred HHHHHHHcCCC-ceEEEE--eCCCCCchHHHHHHHHHHHHHHCCCCEEEeee
Confidence 33333222333 334454 34322211 223455556677665554
No 20
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=81.86 E-value=38 Score=32.52 Aligned_cols=107 Identities=8% Similarity=-0.051 Sum_probs=65.9
Q ss_pred CCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCC
Q 042388 88 KSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIE 167 (567)
Q Consensus 88 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~ 167 (567)
+.++||+++....-|=...++.|+-++++.. |.++.-+ .+..+
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~-----------------------~~~~~------------ 45 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQAL--NVTVEYR-----------------------GAAQY------------ 45 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHHH--TCEEEEE-----------------------ECSSS------------
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHHc--CCEEEEe-----------------------CCCcC------------
Confidence 3579999999999999999999999987653 2222210 00111
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
+.+...+.++.+...++||+|+.+.+.+... ..+ +.+.+.+ ++||.+ |++......-.++++|-
T Consensus 46 ~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~~-~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~d~ 109 (305)
T 3g1w_A 46 DIQEQITVLEQAIAKNPAGIAISAIDPVELT-DTI-NKAVDAG--IPIVLF----DSGAPDSHAHSFLGTNN 109 (305)
T ss_dssp CHHHHHHHHHHHHHHCCSEEEECCSSTTTTH-HHH-HHHHHTT--CCEEEE----SSCCTTSCCSCEEECCH
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCCCHHHHH-HHH-HHHHHCC--CcEEEE----CCCCCCCceeEEECcCH
Confidence 3455667788888899999999987765211 112 2233334 567765 44444322114677765
No 21
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=77.79 E-value=3.4 Score=43.41 Aligned_cols=55 Identities=11% Similarity=0.064 Sum_probs=44.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCC----------------CCccEEEecccC
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKD----------------MKTRVIGCPKTI 222 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g----------------~~i~VIgVPKTI 222 (567)
+.+...++++.+++.+.|.+|-|||--.++.|..++-.+...+ -.+++|.||-|-
T Consensus 91 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTa 161 (408)
T 1oj7_A 91 AYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLP 161 (408)
T ss_dssp BHHHHHHHHHHHHHHTCCEEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCC
Confidence 5678999999999999999999999888888887776433211 357899999774
No 22
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=75.01 E-value=3.3 Score=42.14 Aligned_cols=45 Identities=18% Similarity=0.179 Sum_probs=33.5
Q ss_pred HHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCC
Q 042388 180 KKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLK 227 (567)
Q Consensus 180 ~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 227 (567)
...+.|.+|++|||||...+..- +.+.+.++++.+||.==-||+.
T Consensus 77 ~~~~~d~vvv~GGDGTv~~v~~~---l~~~~~~~pl~iIP~GT~N~lA 121 (337)
T 2qv7_A 77 MHENYDVLIAAGGDGTLNEVVNG---IAEKPNRPKLGVIPMGTVNDFG 121 (337)
T ss_dssp TTTTCSEEEEEECHHHHHHHHHH---HTTCSSCCEEEEEECSSCCHHH
T ss_pred hhcCCCEEEEEcCchHHHHHHHH---HHhCCCCCcEEEecCCcHhHHH
Confidence 34578999999999998776533 3233557899999986667776
No 23
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=74.14 E-value=6.4 Score=41.28 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEeccc
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT 221 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT 221 (567)
+.+..+++++.+++.+.|.+|-|||--+++.|..++- +. .+++|.||-|
T Consensus 91 ~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~AK~iA~-~~----~~p~i~IPTT 139 (387)
T 3uhj_A 91 CTSEIERVRKVAIEHGSDILVGVGGGKTADTAKIVAI-DT----GARIVIAPTI 139 (387)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHH-HT----TCEEEECCSS
T ss_pred CHHHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHH-hc----CCCEEEecCc
Confidence 4577899999999999999999999888888887773 32 5789999998
No 24
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=74.09 E-value=40 Score=32.09 Aligned_cols=110 Identities=13% Similarity=0.076 Sum_probs=65.6
Q ss_pred CCCcEEEEEecCC-CCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCC
Q 042388 87 NKSLKIGVVLSGG-QAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDK 165 (567)
Q Consensus 87 ~~~~~IgIv~sGG-~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k 165 (567)
.+..+|||++..- ..|=...++.|+-++++... +..+.-+. +. ..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~-g~~~~~~~------------------------~~---------~~ 51 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYS-DFNISANI------------------------TH---------YD 51 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTG-GGCEEEEE------------------------EE---------EC
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHHH-hCCeEEEE------------------------Ec---------CC
Confidence 4568999999988 88999999999998876530 11111000 00 00
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCchhH-HHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 166 IETPEQFKQAEETAKKLDLDGLVVIGGDDSN-TNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 166 ~~~~e~~~~~~~~l~~~~id~LViIGGddS~-t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
-.+++.....++.+...++||+|+.+-+... ..+ + +.+.+.+ ++||.+ |+++.....-.++++|-
T Consensus 52 ~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~--~-~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 117 (304)
T 3gbv_A 52 PYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGF--T-DALNELG--IPYIYI----DSQIKDAPPLAFFGQNS 117 (304)
T ss_dssp SSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHH--H-HHHHHHT--CCEEEE----SSCCTTSCCSEEEECCH
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEECCCChHHHHHH--H-HHHHHCC--CeEEEE----eCCCCCCCceEEEecCh
Confidence 1245566778888999999999999987542 221 1 2223334 567765 44444322113566654
No 25
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=73.71 E-value=5.5 Score=41.41 Aligned_cols=52 Identities=23% Similarity=0.276 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCC
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGD 225 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDND 225 (567)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-. . .+++|.||-|- .|
T Consensus 73 ~~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~--~~P~i~IPTTa-tg 124 (364)
T 3iv7_A 73 PIEVAERARAVATDNEIDLLVCVGGGSTIGLAKAIAMT---T--ALPIVAIPTTY-AG 124 (364)
T ss_dssp BHHHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHH---H--CCCEEEEECSS-SC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhc---c--CCCEEEEcCCc-cc
Confidence 56889999999999999999999998888888777653 2 47899999987 53
No 26
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=72.27 E-value=2.2 Score=43.03 Aligned_cols=53 Identities=17% Similarity=0.264 Sum_probs=36.6
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHH--HHHHHHHHHHHH
Q 042388 183 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTAC--KIFSEMIGNVMT 253 (567)
Q Consensus 183 ~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~--k~~ae~I~ni~~ 253 (567)
+.|.+|++|||||+-.|+... . +. ++|+||.. . ++||-|.. +-+-+.+..+..
T Consensus 68 ~~DlvIvlGGDGT~L~aa~~~---~--~~-~PilGIN~---------G---~lGFLt~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 68 NFDFIVSVGGDGTILRILQKL---K--RC-PPIFGINT---------G---RVGLLTHASPENFEVELKKAVE 122 (278)
T ss_dssp GSSEEEEEECHHHHHHHHTTC---S--SC-CCEEEEEC---------S---SSCTTCCBBTTBCHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHh---C--CC-CcEEEECC---------C---CCccccccCHHHHHHHHHHHHh
Confidence 568999999999997776442 1 23 89999984 1 78887764 334455555544
No 27
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=72.23 E-value=8.2 Score=39.75 Aligned_cols=48 Identities=15% Similarity=0.233 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEeccc
Q 042388 169 PEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT 221 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT 221 (567)
.+.++++.+.+++.+.|.+|-|||--.++.|..+| +++ .+++|.||-|
T Consensus 72 ~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA-~~~----~~p~i~IPTT 119 (370)
T 1jq5_A 72 RNEVERIANIARKAEAAIVIGVGGGKTLDTAKAVA-DEL----DAYIVIVPTA 119 (370)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHH-HHH----TCEEEEEESS
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHH-Hhc----CCCEEEeccc
Confidence 36688899999999999999999988888888777 332 4789999988
No 28
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=72.11 E-value=8.9 Score=36.89 Aligned_cols=104 Identities=13% Similarity=0.118 Sum_probs=65.5
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKI 166 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~ 166 (567)
.+..+|||++..-.-|=...++.|+-+.++.. +.++.-+. ..+
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~------------------------~~~----------- 48 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHK--GYSVLLAN------------------------TAE----------- 48 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCEEEEEE------------------------CTT-----------
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHC--CCEEEEEe------------------------CCC-----------
Confidence 45679999999888888889999998887642 33332111 111
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 167 ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 167 ~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
+.+...+.++.+...++||+|+.+.+.+.. +.+.+.+. +++||.+ |.+.....+ .++++|-
T Consensus 49 -~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~~~~~--~iPvV~~----~~~~~~~~~-~~V~~D~ 109 (291)
T 3egc_A 49 -DIVREREAVGQFFERRVDGLILAPSEGEHD----YLRTELPK--TFPIVAV----NRELRIPGC-GAVLSEN 109 (291)
T ss_dssp -CHHHHHHHHHHHHHTTCSEEEECCCSSCCH----HHHHSSCT--TSCEEEE----SSCCCCTTC-EEEEECH
T ss_pred -CHHHHHHHHHHHHHCCCCEEEEeCCCCChH----HHHHhhcc--CCCEEEE----ecccCCCCC-CEEEECc
Confidence 234556778888999999999999876221 22333333 4677754 555543333 4566554
No 29
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=71.32 E-value=6.3 Score=40.84 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccC
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 222 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 222 (567)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-. . .+++|.||-|-
T Consensus 74 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~aK~iA~~---~--~~p~i~IPTT~ 123 (358)
T 3jzd_A 74 PIESARDATARAREAGADCAVAVGGGSTTGLGKAIALE---T--GMPIVAIPTTY 123 (358)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHH---H--CCCEEEEECSS
T ss_pred CHHHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHhc---c--CCCEEEEeCCc
Confidence 46788999999999999999999998888888777753 2 47899999884
No 30
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=71.29 E-value=8 Score=40.27 Aligned_cols=58 Identities=14% Similarity=0.074 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcC-------------CCCccEEEecccCcCC
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSK-------------DMKTRVIGCPKTIDGD 225 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~-------------g~~i~VIgVPKTIDND 225 (567)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-.+... .-.+++|.||-|--.|
T Consensus 73 ~~~~v~~~~~~~~~~~~D~IIavGGGsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtg 143 (383)
T 3ox4_A 73 TVTAVLEGLKILKDNNSDFVISLGGGSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINTTAGTA 143 (383)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEECSSSCC
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeCCCCch
Confidence 568899999999999999999999988888888777654211 1257899999887543
No 31
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=70.86 E-value=2.9 Score=42.29 Aligned_cols=33 Identities=30% Similarity=0.394 Sum_probs=24.5
Q ss_pred cCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEec
Q 042388 182 LDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCP 219 (567)
Q Consensus 182 ~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVP 219 (567)
.+.|.+|++|||||+-.|+..... . +++|+||+
T Consensus 74 ~~~d~vi~~GGDGT~l~a~~~~~~---~--~~pvlgi~ 106 (307)
T 1u0t_A 74 DGCELVLVLGGDGTFLRAAELARN---A--SIPVLGVN 106 (307)
T ss_dssp --CCCEEEEECHHHHHHHHHHHHH---H--TCCEEEEE
T ss_pred cCCCEEEEEeCCHHHHHHHHHhcc---C--CCCEEEEe
Confidence 468999999999998887655322 1 46899998
No 32
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=70.84 E-value=7.1 Score=40.34 Aligned_cols=50 Identities=24% Similarity=0.220 Sum_probs=42.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccC
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 222 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 222 (567)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-. . .+++|.||-|-
T Consensus 72 ~~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~--~~p~i~IPTTa 121 (353)
T 3hl0_A 72 PVEVTKTAVEAYRAAGADCVVSLGGGSTTGLGKAIALR---T--DAAQIVIPTTY 121 (353)
T ss_dssp BHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH---H--CCEEEEEECSS
T ss_pred cHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhc---c--CCCEEEEeCCc
Confidence 45778999999999999999999998888888777653 1 57899999987
No 33
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=70.45 E-value=6 Score=40.24 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=31.3
Q ss_pred HcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCC
Q 042388 181 KLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLK 227 (567)
Q Consensus 181 ~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 227 (567)
..+.|.+|++|||||+..+..-.... ..+.++++..+|.==-||+.
T Consensus 80 ~~~~d~vvv~GGDGTl~~v~~~l~~~-~~~~~~plgiiP~Gt~N~fa 125 (332)
T 2bon_A 80 KFGVATVIAGGGDGTINEVSTALIQC-EGDDIPALGILPLGTANDFA 125 (332)
T ss_dssp HHTCSEEEEEESHHHHHHHHHHHHHC-CSSCCCEEEEEECSSSCHHH
T ss_pred hcCCCEEEEEccchHHHHHHHHHhhc-ccCCCCeEEEecCcCHHHHH
Confidence 45789999999999987765432211 11456788889975556665
No 34
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=69.84 E-value=33 Score=32.54 Aligned_cols=89 Identities=12% Similarity=0.130 Sum_probs=52.8
Q ss_pred CCCcEEEEEecC--CCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCC
Q 042388 87 NKSLKIGVVLSG--GQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRD 164 (567)
Q Consensus 87 ~~~~~IgIv~sG--G~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~ 164 (567)
.+..+||+++.. -..|-...++.|+-++++.. |.++. . .+..
T Consensus 17 ~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------~---------~~~~---------- 60 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--GRQLL---------------L---------ADGK---------- 60 (296)
T ss_dssp --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHT--TCEEE---------------E---------ECCT----------
T ss_pred CCCceEEEEeCCcccCCchHHHHHHHHHHHHHHC--CCEEE---------------E---------EeCC----------
Confidence 345799999987 67788888999998887542 21111 0 0001
Q ss_pred CCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhc-CCCCccEEEec
Q 042388 165 KIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRS-KDMKTRVIGCP 219 (567)
Q Consensus 165 k~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~-~g~~i~VIgVP 219 (567)
.+++.....++.+...++|++|+.+.+.+... + +.+.+ . +++||.+-
T Consensus 61 --~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~---~-~~l~~~~--~iPvV~~~ 108 (296)
T 3brq_A 61 --HSAEEERQAIQYLLDLRCDAIMIYPRFLSVDE---I-DDIIDAH--SQPIMVLN 108 (296)
T ss_dssp --TSHHHHHHHHHHHHHTTCSEEEEECSSSCHHH---H-HHHHHTC--SSCEEEES
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEecCCCChHH---H-HHHHhcC--CCCEEEEc
Confidence 12344556777888899999999988654222 2 23333 3 45677653
No 35
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=69.68 E-value=8.3 Score=39.98 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=44.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcC---------------CCCccEEEecccCc
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSK---------------DMKTRVIGCPKTID 223 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~---------------g~~i~VIgVPKTID 223 (567)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.+... .-.+++|.||-|--
T Consensus 73 ~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~g 143 (386)
T 1rrm_A 73 TITVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAG 143 (386)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSS
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeCCCC
Confidence 568899999999999999999999988888888777654211 12578999998773
No 36
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=69.07 E-value=33 Score=32.59 Aligned_cols=106 Identities=19% Similarity=0.177 Sum_probs=65.4
Q ss_pred CcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCC
Q 042388 89 SLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIET 168 (567)
Q Consensus 89 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~ 168 (567)
..+|||++..-.-|-...++.|+-+.++.. +.++.-+. +. .+
T Consensus 15 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~------------------------~~------------~~ 56 (298)
T 3tb6_A 15 NKTIGVLTTYISDYIFPSIIRGIESYLSEQ--GYSMLLTS------------------------TN------------NN 56 (298)
T ss_dssp CCEEEEEESCSSSTTHHHHHHHHHHHHHHT--TCEEEEEE------------------------CT------------TC
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHHHC--CCEEEEEe------------------------CC------------CC
Confidence 379999999999999999999999887642 33332110 11 12
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHH-HHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 169 PEQFKQAEETAKKLDLDGLVVIGGDDSNT-NACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~id~LViIGGddS~t-~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
.+...+.++.+...++||+|+.+.+.+.. ....+.+.+.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 57 ~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~--iPvV~~----~~~~~~~~~-~~V~~d~ 121 (298)
T 3tb6_A 57 PDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNG--IPFAMI----NASYAELAA-PSFTLDD 121 (298)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTT--CCEEEE----SSCCTTCSS-CEEEECH
T ss_pred hHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcC--CCEEEE----ecCcCCCCC-CEEEeCc
Confidence 34456778888899999999999875311 0111223334444 567754 555443332 3566554
No 37
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=68.58 E-value=7.7 Score=40.53 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHHcC---CCEEEEecCchhHHHHHHHHHHHhcC-------------CCCccEEEecccCc
Q 042388 168 TPEQFKQAEETAKKLD---LDGLVVIGGDDSNTNACLLAENFRSK-------------DMKTRVIGCPKTID 223 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~---id~LViIGGddS~t~A~~Lae~~~~~-------------g~~i~VIgVPKTID 223 (567)
+.+..+++++.+++.+ .|.+|-|||--+++.|..++-.+... +-.+++|.||-|--
T Consensus 91 t~~~v~~~~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTag 162 (375)
T 3rf7_A 91 TTVQVDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPTVSG 162 (375)
T ss_dssp BHHHHHHHHHHHHHHCSSCCSEEEEEESHHHHHHHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEESSCS
T ss_pred CHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcCCCc
Confidence 5688999999999998 99999999988888888887654211 12478999997753
No 38
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=68.56 E-value=45 Score=31.57 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=65.3
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKI 166 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~ 166 (567)
.+..+|||++..-.-|-...++.|+-+++++. |.++.-+. ..+
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~~------------------------~~~----------- 47 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILESR--GYIGVLFD------------------------ANA----------- 47 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTT--TCEEEEEE------------------------CTT-----------
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHHC--CCEEEEEe------------------------CCC-----------
Confidence 45679999999888888899999998886542 33322110 111
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 167 ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 167 ~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
+.+...+.++.+...++||+|+.+.+. .. ..+.+.+. +++||.+ |.++....+ .++++|-
T Consensus 48 -~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~----~~~~l~~~--~iPvV~i----~~~~~~~~~-~~V~~D~ 107 (276)
T 3jy6_A 48 -DIEREKTLLRAIGSRGFDGLILQSFSN-PQ----TVQEILHQ--QMPVVSV----DREMDACPW-PQVVTDN 107 (276)
T ss_dssp -CHHHHHHHHHHHHTTTCSEEEEESSCC-HH----HHHHHHTT--SSCEEEE----SCCCTTCSS-CEEECCH
T ss_pred -CHHHHHHHHHHHHhCCCCEEEEecCCc-HH----HHHHHHHC--CCCEEEE----ecccCCCCC-CEEEECh
Confidence 234456778888899999999999887 21 22334444 4667765 454443332 3566553
No 39
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=68.18 E-value=6.5 Score=39.02 Aligned_cols=90 Identities=19% Similarity=0.141 Sum_probs=50.5
Q ss_pred CcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCC
Q 042388 89 SLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIET 168 (567)
Q Consensus 89 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~ 168 (567)
.+||+|+.-.+ .+.....+..+.+.+++ .+.+++.......++ + ..|.. .+ .
T Consensus 5 mkki~ii~np~-~~~~~~~~~~i~~~l~~--~g~~v~~~~~~~~~~-------------~----~~~~~-------~~-~ 56 (292)
T 2an1_A 5 FKCIGIVGHPR-HPTALTTHEMLYRWLCD--QGYEVIVEQQIAHEL-------------Q----LKNVP-------TG-T 56 (292)
T ss_dssp CCEEEEECC--------CHHHHHHHHHHH--TTCEEEEEHHHHHHT-------------T----CSSCC-------EE-C
T ss_pred CcEEEEEEcCC-CHHHHHHHHHHHHHHHH--CCCEEEEecchhhhc-------------c----ccccc-------cc-c
Confidence 47899999876 47777888888888764 355665443222111 0 00110 01 1
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEec
Q 042388 169 PEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCP 219 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVP 219 (567)
.+ . ...+.|.+|++|||||+..|+... .. .+++++|||
T Consensus 57 ~~---~-----~~~~~D~vi~~GGDGT~l~a~~~~---~~--~~~P~lGI~ 94 (292)
T 2an1_A 57 LA---E-----IGQQADLAVVVGGDGNMLGAARTL---AR--YDINVIGIN 94 (292)
T ss_dssp HH---H-----HHHHCSEEEECSCHHHHHHHHHHH---TT--SSCEEEEBC
T ss_pred hh---h-----cccCCCEEEEEcCcHHHHHHHHHh---hc--CCCCEEEEE
Confidence 11 1 134689999999999988876442 22 257899998
No 40
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=67.88 E-value=8.6 Score=39.41 Aligned_cols=52 Identities=13% Similarity=0.235 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccC
Q 042388 168 TPEQFKQAEETAKKLDL---DGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 222 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~i---d~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 222 (567)
+.+..+++.+.+++.++ |.+|-+||--.++.|..+|-.+. + .+++|.||-|.
T Consensus 67 ~~~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~~A~~~~-r--gip~i~IPTTl 121 (343)
T 3clh_A 67 NFHSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSIYF-R--GIDFINIPTTL 121 (343)
T ss_dssp SHHHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHBT-T--CCEEEEEECSH
T ss_pred CHHHHHHHHHHHHhcCCCCCceEEEECChHHHHHHHHHHHHhc-c--CCCEEEeCCch
Confidence 56889999999999999 99999999877777776664332 2 57899999885
No 41
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=66.88 E-value=8.4 Score=39.55 Aligned_cols=52 Identities=23% Similarity=0.374 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccC
Q 042388 168 TPEQFKQAEETAKKLDL---DGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 222 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~i---d~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 222 (567)
+.+..+++.+.+++.++ |.+|-+||--.++.|..+|-.+ .+ .+++|.||-|.
T Consensus 72 ~~~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~vA~~~-~r--gip~i~IPTT~ 126 (354)
T 1xah_A 72 TFEQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFVAATL-LR--GVHFIQVPTTI 126 (354)
T ss_dssp SHHHHHHHHHHHHTTCCCTTCEEEEEESHHHHHHHHHHHHHB-TT--CCEEEEEECST
T ss_pred CHHHHHHHHHHHHHcCCCCCceEEEECChHHHHHHHHHHHHh-cc--CCCEEEECCcc
Confidence 56889999999999999 9999999988888777776543 23 47899999776
No 42
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=65.98 E-value=74 Score=30.09 Aligned_cols=107 Identities=11% Similarity=0.072 Sum_probs=64.8
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKI 166 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~ 166 (567)
.+..+|||++..-.-|=...++.|+-++++.. |.++.-+ +..+
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~------------------------~~~~----------- 48 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKAN--KYEALVA------------------------TSQN----------- 48 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHT--TCEEEEE------------------------ECSS-----------
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHc--CCEEEEE------------------------CCCC-----------
Confidence 45579999999888888899999999887653 3322211 0111
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 167 ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 167 ~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
+.+...+.++.+...++||+|+.+.+..... .+.+.+.+.+ ++||.+ |.+....+.-.++++|-
T Consensus 49 -~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~--~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 112 (293)
T 3l6u_A 49 -SRISEREQILEFVHLKVDAIFITTLDDVYIG--SAIEEAKKAG--IPVFAI----DRMIRSDAVVSSITSNN 112 (293)
T ss_dssp -CHHHHHHHHHHHHHTTCSEEEEECSCTTTTH--HHHHHHHHTT--CCEEEE----SSCCCCTTCSEEEEECH
T ss_pred -CHHHHHHHHHHHHHcCCCEEEEecCChHHHH--HHHHHHHHcC--CCEEEe----cCCCCCCcceeEEecCH
Confidence 3445567788888999999999988765421 1123333344 567766 44444322114666664
No 43
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=65.79 E-value=13 Score=38.46 Aligned_cols=55 Identities=9% Similarity=0.123 Sum_probs=43.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHH---------hc----CCCCccEEEecccC
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENF---------RS----KDMKTRVIGCPKTI 222 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~---------~~----~g~~i~VIgVPKTI 222 (567)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.. .. ..-.+++|.||-|-
T Consensus 77 ~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~ 144 (387)
T 3bfj_A 77 KDTNVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNTTA 144 (387)
T ss_dssp BHHHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECST
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCC
Confidence 568899999999999999999999988888888777541 10 01257899999876
No 44
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=65.37 E-value=3.6 Score=43.06 Aligned_cols=121 Identities=18% Similarity=0.214 Sum_probs=67.2
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCccc----cccc
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDM----ICSG 162 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~----LGS~ 162 (567)
..+++|+||.= -..|.....+..+++.|... +.+||- +.++. +.+. +.+.-.+.. ..+.
T Consensus 36 ~~~k~I~iv~K-~~~~~~~~~~~~l~~~L~~~--~~~V~v---------e~~~~----~~~~-~~~~~~~~~~~~~~~~~ 98 (365)
T 3pfn_A 36 KSPKSVLVIKK-MRDASLLQPFKELCTHLMEE--NMIVYV---------EKKVL----EDPA-IASDESFGAVKKKFCTF 98 (365)
T ss_dssp SCCCEEEEEEC-TTCGGGHHHHHHHHHHHHHT--SCEEEE---------EHHHH----HSHH-HHHCSTTHHHHHHCEEE
T ss_pred CCCCEEEEEec-CCCHHHHHHHHHHHHHHHHC--CCEEEE---------ehHHh----hhhc-ccccccccccccccccc
Confidence 45789999975 45688889999999998753 455542 11110 0000 000000000 0000
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHH
Q 042388 163 RDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACK 242 (567)
Q Consensus 163 R~k~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k 242 (567)
+..+.+ ...+.|.+|++|||||+-.|+.+. . +..++|+||=. -++||-|-..
T Consensus 99 ~~~~~~-----------~~~~~DlvI~lGGDGT~L~aa~~~---~--~~~~PvlGiN~------------G~LGFLt~~~ 150 (365)
T 3pfn_A 99 REDYDD-----------ISNQIDFIICLGGDGTLLYASSLF---Q--GSVPPVMAFHL------------GSLGFLTPFS 150 (365)
T ss_dssp CTTTCC-----------CTTTCSEEEEESSTTHHHHHHHHC---S--SSCCCEEEEES------------SSCTTTCCEE
T ss_pred ccChhh-----------cccCCCEEEEEcChHHHHHHHHHh---c--cCCCCEEEEcC------------CCCccceeec
Confidence 111100 024789999999999998887653 2 34578999842 2788866432
Q ss_pred --HHHHHHHHHH
Q 042388 243 --IFSEMIGNVM 252 (567)
Q Consensus 243 --~~ae~I~ni~ 252 (567)
-+.+.+..+.
T Consensus 151 ~~~~~~~l~~vl 162 (365)
T 3pfn_A 151 FENFQSQVTQVI 162 (365)
T ss_dssp STTHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 3444555444
No 45
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=65.18 E-value=8.1 Score=40.00 Aligned_cols=58 Identities=19% Similarity=0.149 Sum_probs=45.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhc-------------CCCCccEEEecccCcCC
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRS-------------KDMKTRVIGCPKTIDGD 225 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~-------------~g~~i~VIgVPKTIDND 225 (567)
+.+..+++.+.+++.+.|.+|-|||--.++.|..++-.+.. ..-.+++|.||-|--.+
T Consensus 83 ~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtg 153 (371)
T 1o2d_A 83 SFDNVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTAGTG 153 (371)
T ss_dssp BHHHHHHHHHHHTTSCCSEEEEEESHHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSSCCC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCCCchh
Confidence 56889999999999999999999998888888877765432 00357899999875544
No 46
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=64.55 E-value=47 Score=32.59 Aligned_cols=105 Identities=13% Similarity=0.111 Sum_probs=64.1
Q ss_pred CCCcEEEEEecC--CCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCC
Q 042388 87 NKSLKIGVVLSG--GQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRD 164 (567)
Q Consensus 87 ~~~~~IgIv~sG--G~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~ 164 (567)
.+..+||+++.. -.-|=...++.|+-+.++.. |.++.-+ +..+
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~------------------------~~~~--------- 103 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--GRQLLLA------------------------DGKH--------- 103 (338)
T ss_dssp -CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHT--TCEEEEE------------------------ECTT---------
T ss_pred CCCCEEEEEecCCcccChhHHHHHHHHHHHHHHC--CCEEEEE------------------------eCCC---------
Confidence 456799999988 77788888999998887643 2222100 0111
Q ss_pred CCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 165 KIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 165 k~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
+.+...+.++.+...++||+|+.+.+.+... +.+.+.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 104 ---~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~~~~~~~~~--iPvV~~----~~~~~~~~~-~~V~~D~ 165 (338)
T 3dbi_A 104 ---SAEEERQAIQYLLDLRCDAIMIYPRFLSVDE---IDDIIDAHS--QPIMVL----NRRLRKNSS-HSVWCDH 165 (338)
T ss_dssp ---SHHHHHHHHHHHHHTTCSEEEECCSSSCHHH---HHHHHHHCS--SCEEEE----SSCCSSSGG-GEECBCH
T ss_pred ---ChHHHHHHHHHHHhCCCCEEEEeCCCCChHH---HHHHHHcCC--CCEEEE----cCCCCCCCC-CEEEECh
Confidence 2344456778888999999999987765432 223333334 567754 555544332 3566653
No 47
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=64.41 E-value=24 Score=33.82 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=59.4
Q ss_pred CCCcEEEEEecCCCC--chhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCC
Q 042388 87 NKSLKIGVVLSGGQA--PGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRD 164 (567)
Q Consensus 87 ~~~~~IgIv~sGG~a--PG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~ 164 (567)
.+..+|||++..-.- |=...++.|+-+.++. .|.++. -. +....
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~--~g~~~~---------------~~---------~~~~~-------- 51 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMVFGITEVLST--TQYHLV---------------VT---------PHIHA-------- 51 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTT--SSCEEE---------------EC---------CBSSG--------
T ss_pred CCCCEEEEEecCCccccHHHHHHHHHHHHHHHH--cCCEEE---------------Ee---------cCCcc--------
Confidence 455799999987654 8888888998887643 222221 10 01110
Q ss_pred CCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 165 KIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 165 k~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
++....+.+.+...++||+|+.+.+.+.... +.+.+.+ ++||. +|.+.....+ .++++|-
T Consensus 52 ----~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~----~~l~~~~--iPvV~----i~~~~~~~~~-~~V~~D~ 111 (288)
T 3gv0_A 52 ----KDSMVPIRYILETGSADGVIISKIEPNDPRV----RFMTERN--MPFVT----HGRSDMGIEH-AFHDFDN 111 (288)
T ss_dssp ----GGTTHHHHHHHHHTCCSEEEEESCCTTCHHH----HHHHHTT--CCEEE----ESCCCSSCCC-EEEEECH
T ss_pred ----hhHHHHHHHHHHcCCccEEEEecCCCCcHHH----HHHhhCC--CCEEE----ECCcCCCCCC-cEEEeCc
Confidence 1112345566778999999999876543322 3333344 56774 4555543333 3566654
No 48
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=64.20 E-value=1e+02 Score=29.41 Aligned_cols=92 Identities=16% Similarity=0.044 Sum_probs=59.2
Q ss_pred CcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCC
Q 042388 89 SLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIET 168 (567)
Q Consensus 89 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~ 168 (567)
..+|||++..-..|-...++.|+-++++.. |.++. - .+... ..+
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------~---------~~~~~----------~~~ 46 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEEL--KVDLQ---------------I---------LAPPG----------AND 46 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHH--TCEEE---------------E---------ECCSS----------SCC
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHh--CcEEE---------------E---------ECCCC----------cCC
Confidence 479999999988999999999999987653 21111 0 00111 124
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchh--HHHHHHHHHHHhcCCCCccEEEecccC
Q 042388 169 PEQFKQAEETAKKLDLDGLVVIGGDDS--NTNACLLAENFRSKDMKTRVIGCPKTI 222 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~id~LViIGGddS--~t~A~~Lae~~~~~g~~i~VIgVPKTI 222 (567)
.+...+.++.+...++||+|+.+-+.. ......+ .+. +++||.+=..+
T Consensus 47 ~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~----~~~--giPvV~~~~~~ 96 (297)
T 3rot_A 47 VPKQVQFIESALATYPSGIATTIPSDTAFSKSLQRA----NKL--NIPVIAVDTRP 96 (297)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHHH----HHH--TCCEEEESCCC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH----HHC--CCCEEEEcCCC
Confidence 556677888889999999999887655 2222233 233 46787654333
No 49
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=64.06 E-value=52 Score=31.44 Aligned_cols=104 Identities=18% Similarity=0.233 Sum_probs=61.0
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKI 166 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~ 166 (567)
.+..+||||+..-..|-...++.|+-++++.. +.++. + .+..+
T Consensus 14 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~----------------~--------~~~~~----------- 56 (289)
T 2fep_A 14 KKTTTVGVIIPDISSIFYSELARGIEDIATMY--KYNII----------------L--------SNSDQ----------- 56 (289)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCEEE----------------E--------EECTT-----------
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHc--CCEEE----------------E--------EeCCC-----------
Confidence 45579999998777788888899998886542 22211 0 01111
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 167 ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 167 ~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
+.+...+.++.+...++||+|+.+.+.+... + +.+.+.+ ++||.+- .+.....+ .++++|-
T Consensus 57 -~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~-~~l~~~~--iPvV~~~----~~~~~~~~-~~V~~D~ 117 (289)
T 2fep_A 57 -NMEKELHLLNTMLGKQVDGIVFMGGNITDEH---V-AEFKRSP--VPIVLAA----SVEEQEET-PSVAIDY 117 (289)
T ss_dssp -CHHHHHHHHHHHHHTTCSEEEECCSCCCHHH---H-HHHHHSS--SCEEEES----CCCTTCCS-CEEECCH
T ss_pred -CHHHHHHHHHHHHhCCCCEEEEecCCCCHHH---H-HHHHhcC--CCEEEEc----cccCCCCC-CEEEECc
Confidence 2344556778888999999999987644222 2 2233334 5677663 33332222 3566653
No 50
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=64.04 E-value=13 Score=38.80 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=43.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhc-------------CCCCccEEEecccC
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRS-------------KDMKTRVIGCPKTI 222 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~-------------~g~~i~VIgVPKTI 222 (567)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.+.. ..-.+++|.||-|-
T Consensus 86 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTa 153 (407)
T 1vlj_A 86 VLSKVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTIS 153 (407)
T ss_dssp BHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECSC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChhHHHHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCC
Confidence 56889999999999999999999998888888877764311 01357899999774
No 51
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=63.48 E-value=2.6 Score=41.48 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=25.1
Q ss_pred cCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEec
Q 042388 182 LDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCP 219 (567)
Q Consensus 182 ~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVP 219 (567)
.+.|.+|++|||||+-.|+.. +. + +++++||+
T Consensus 40 ~~~D~vv~~GGDGTll~~a~~---~~--~-~~PilGIn 71 (258)
T 1yt5_A 40 VTADLIVVVGGDGTVLKAAKK---AA--D-GTPMVGFK 71 (258)
T ss_dssp BCCSEEEEEECHHHHHHHHTT---BC--T-TCEEEEEE
T ss_pred CCCCEEEEEeCcHHHHHHHHH---hC--C-CCCEEEEE
Confidence 368999999999998887643 22 2 67899998
No 52
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=63.11 E-value=29 Score=32.54 Aligned_cols=103 Identities=18% Similarity=0.186 Sum_probs=64.3
Q ss_pred CcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCC
Q 042388 89 SLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIET 168 (567)
Q Consensus 89 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~ 168 (567)
..+|||++..-.-|=...++.|+-++++.. |.++.-+ +..+ +
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~------------------------~~~~------------~ 43 (272)
T 3o74_A 2 TRTLGFILPDLENPSYARIAKQLEQGARAR--GYQLLIA------------------------SSDD------------Q 43 (272)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHT--TCEEEEE------------------------ECTT------------C
T ss_pred ceEEEEEeCCCcChhHHHHHHHHHHHHHHC--CCEEEEE------------------------eCCC------------C
Confidence 368999999988899999999999887643 3332210 0111 2
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 169 PEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
.+.....++.+...++||+|+.+.+.... ..+ +.+.+.+ ++||. +|++.....+ .++++|-
T Consensus 44 ~~~~~~~~~~l~~~~vdgiIi~~~~~~~~--~~~-~~~~~~~--iPvV~----~~~~~~~~~~-~~V~~d~ 104 (272)
T 3o74_A 44 PDSERQLQQLFRARRCDALFVASCLPPED--DSY-RELQDKG--LPVIA----IDRRLDPAHF-CSVISDD 104 (272)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCCSSC--CHH-HHHHHTT--CCEEE----ESSCCCTTTC-EEEEECH
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCccccH--HHH-HHHHHcC--CCEEE----EccCCCcccc-CEEEEch
Confidence 34556778888899999999998773311 112 2333344 56774 4555554333 3566653
No 53
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=62.56 E-value=3.2 Score=43.79 Aligned_cols=37 Identities=8% Similarity=0.062 Sum_probs=26.2
Q ss_pred CCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEE
Q 042388 88 KSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLY 125 (567)
Q Consensus 88 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~ 125 (567)
.+++|+||.==+ -+.....+..+.+.|.+.+++.+|+
T Consensus 40 ~~k~V~II~n~~-~~~~~~~~~~l~~~L~~~~~gi~V~ 76 (388)
T 3afo_A 40 PLQNVYITKKPW-TPSTREAMVEFITHLHESYPEVNVI 76 (388)
T ss_dssp CCCEEEEEECTT-CHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred CCcEEEEEEeCC-CHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 468999998744 3666677788888887665566654
No 54
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=62.49 E-value=13 Score=38.85 Aligned_cols=52 Identities=13% Similarity=0.243 Sum_probs=41.8
Q ss_pred ChHHHHHHHHHHHHcC--C---CEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccC
Q 042388 168 TPEQFKQAEETAKKLD--L---DGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 222 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~--i---d~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 222 (567)
+.+.++++.+.+.+.+ + |.+|-+||--.++.|...|-.+. + .+++|.||-|.
T Consensus 85 ~~~~v~~~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~~-r--gip~i~IPTTl 141 (393)
T 1sg6_A 85 SRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTYM-R--GVRYVQVPTTL 141 (393)
T ss_dssp SHHHHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHGG-G--CCEEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCCCCCCCEEEEECCcHHHHHHHHHHHHhc-C--CCCEEEECCch
Confidence 5678999999999999 9 99999999877777776665332 3 46899999764
No 55
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=62.26 E-value=50 Score=31.53 Aligned_cols=104 Identities=15% Similarity=0.083 Sum_probs=59.2
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKI 166 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~ 166 (567)
.+..+|||++..-..|=...++.|+-+++++. +.++. + .+..+
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~----------------~--------~~~~~----------- 48 (290)
T 2rgy_A 6 QQLGIIGLFVPTFFGSYYGTILKQTDLELRAV--HRHVV----------------V--------ATGCG----------- 48 (290)
T ss_dssp --CCEEEEECSCSCSHHHHHHHHHHHHHHHHT--TCEEE----------------E--------ECCCS-----------
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHC--CCEEE----------------E--------EeCCC-----------
Confidence 34579999998777787888889988886542 22221 0 01111
Q ss_pred CChHHHHH---HHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 167 ETPEQFKQ---AEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 167 ~~~e~~~~---~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
+.+.... .++.+...++||+|+.+.+.+.... +.+.+.+ ++||.+- .+.....+ .++++|-
T Consensus 49 -~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~----~~l~~~~--iPvV~~~----~~~~~~~~-~~V~~D~ 112 (290)
T 2rgy_A 49 -ESTPREQALEAVRFLIGRDCDGVVVISHDLHDEDL----DELHRMH--PKMVFLN----RAFDALPD-ASFCPDH 112 (290)
T ss_dssp -SSCHHHHHHHHHHHHHHTTCSEEEECCSSSCHHHH----HHHHHHC--SSEEEES----SCCTTSGG-GEECCCH
T ss_pred -chhhhhhHHHHHHHHHhcCccEEEEecCCCCHHHH----HHHhhcC--CCEEEEc----cccCCCCC-CEEEeCc
Confidence 0112234 6777888999999999887652222 2233334 5677663 33332222 3566664
No 56
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=62.09 E-value=85 Score=29.65 Aligned_cols=105 Identities=16% Similarity=0.241 Sum_probs=65.7
Q ss_pred CCCcEEEEEecC-----CCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccc
Q 042388 87 NKSLKIGVVLSG-----GQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICS 161 (567)
Q Consensus 87 ~~~~~IgIv~sG-----G~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS 161 (567)
.+..+|||++.. -.-|-...++.|+.++++.. +.++. + .+..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~----------------~--------~~~~------- 52 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE--GYALY----------------M--------STGE------- 52 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT--TCEEE----------------E--------CCCC-------
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHc--CCEEE----------------E--------EeCC-------
Confidence 456799999998 78889999999999887643 22221 0 0011
Q ss_pred cCCCCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 162 GRDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 162 ~R~k~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
.+.+.....++.+...++||+|+.+.+.+.... +.+.+.+ ++||.+ |++......-.++++|-
T Consensus 53 -----~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~----~~l~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 115 (292)
T 3k4h_A 53 -----TEEEIFNGVVKMVQGRQIGGIILLYSRENDRII----QYLHEQN--FPFVLI----GKPYDRKDEITYVDNDN 115 (292)
T ss_dssp -----SHHHHHHHHHHHHHTTCCCEEEESCCBTTCHHH----HHHHHTT--CCEEEE----SCCSSCTTTSCEEECCH
T ss_pred -----CCHHHHHHHHHHHHcCCCCEEEEeCCCCChHHH----HHHHHCC--CCEEEE----CCCCCCCCCCCEEEECc
Confidence 123445678888999999999999987653322 3333344 567754 55554332114666554
No 57
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=58.34 E-value=1.2e+02 Score=28.21 Aligned_cols=106 Identities=19% Similarity=0.152 Sum_probs=62.4
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCCh
Q 042388 90 LKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETP 169 (567)
Q Consensus 90 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~ 169 (567)
.+|||++..-..|-...++.|+-++++.. |.++. -.+ .. .. .+.
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------~~~---------~~---------~~-~~~ 44 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEA--GVTLL---------------HRS---------TK---------DD-GDI 44 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHH--TCEEE---------------ECC---------CS---------ST-TCH
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEE---------------EEC---------CC---------CC-CCH
Confidence 38999999999999999999999987653 22211 000 00 00 134
Q ss_pred HHHHHHHHHHHHcC-CCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 170 EQFKQAEETAKKLD-LDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 170 e~~~~~~~~l~~~~-id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
+...+.++.+...+ +|++|+.+-+..... ..+ +.+.+.+ ++||.+ |.+........++++|-
T Consensus 45 ~~~~~~i~~l~~~~~vdgii~~~~~~~~~~-~~~-~~~~~~~--ipvV~~----~~~~~~~~~~~~V~~d~ 107 (276)
T 3ksm_A 45 AGQIQILSYHLSQAPPDALILAPNSAEDLT-PSV-AQYRARN--IPVLVV----DSDLAGDAHQGLVATDN 107 (276)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCSSTTTTH-HHH-HHHHHTT--CCEEEE----SSCCSSSCSSEEEECCH
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCHHHHH-HHH-HHHHHCC--CcEEEE----ecCCCCCCcceEEccCH
Confidence 55566778888888 999999986533211 111 2333334 578766 44444333223556553
No 58
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=58.23 E-value=15 Score=37.71 Aligned_cols=52 Identities=17% Similarity=0.272 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccC
Q 042388 168 TPEQFKQAEETAKKLDL---DGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 222 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~i---d~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 222 (567)
+.+..+++.+.++++++ |.+|-+||--.++.|...|-.+ .+ .+++|.||-|.
T Consensus 66 ~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~ak~~A~~~-~r--gip~i~IPTTl 120 (348)
T 1ujn_A 66 SLEVYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVAATY-LR--GVAYLAFPTTT 120 (348)
T ss_dssp SHHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHB-TT--CCEEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHHHHh-cc--CCCEEEecCcH
Confidence 45788999999999998 8999999988888777776533 22 47899999763
No 59
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=58.05 E-value=68 Score=31.57 Aligned_cols=88 Identities=14% Similarity=0.106 Sum_probs=57.0
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKI 166 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~ 166 (567)
.+..+||+++..-.-|=...++.|+-+.++. .|.+++-+ ++..
T Consensus 66 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--~g~~~~~~------------------------~~~~----------- 108 (344)
T 3kjx_A 66 NRVNLVAVIIPSLSNMVFPEVLTGINQVLED--TELQPVVG------------------------VTDY----------- 108 (344)
T ss_dssp SCCSEEEEEESCSSSSSHHHHHHHHHHHHTS--SSSEEEEE------------------------ECTT-----------
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHHHHH--CCCEEEEE------------------------eCCC-----------
Confidence 4457999999888888888899999887643 23333210 0111
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 167 ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 167 ~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
+.+...+.++.+...++||+|+.+-+.+... .+.+.+.+ ++||.+
T Consensus 109 -~~~~~~~~i~~l~~~~vdGiIi~~~~~~~~~----~~~l~~~~--iPvV~i 153 (344)
T 3kjx_A 109 -LPEKEEKVLYEMLSWRPSGVIIAGLEHSEAA----RAMLDAAG--IPVVEI 153 (344)
T ss_dssp -CHHHHHHHHHHHHTTCCSEEEEECSCCCHHH----HHHHHHCS--SCEEEE
T ss_pred -CHHHHHHHHHHHHhCCCCEEEEECCCCCHHH----HHHHHhCC--CCEEEE
Confidence 2344567778888999999999987755422 23334444 567665
No 60
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=57.99 E-value=15 Score=38.53 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=42.0
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccC
Q 042388 168 TPEQFKQAEETAKKLDL---DGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 222 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~i---d~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 222 (567)
+.+.++++.+.+++.++ |.+|-+||--.++.|..+|-.+ .+ .+++|.||-|.
T Consensus 105 t~~~v~~~~~~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~~-~r--gip~I~IPTTl 159 (390)
T 3okf_A 105 TLETFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAACY-QR--GVDFIQIPTTL 159 (390)
T ss_dssp BHHHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHB-TT--CCEEEEEECSH
T ss_pred hHHHHHHHHHHHHhcCCCcCcEEEEECCcHHhhHHHHHHHHh-cC--CCCEEEeCCCC
Confidence 56789999999999999 6999999988887777766433 23 47899999876
No 61
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=57.31 E-value=9.2 Score=39.13 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCC
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGD 225 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDND 225 (567)
+.+..+++ +.+++.+.|.+|-|||--.++.|..+| +++ .+++|.||-|.-.|
T Consensus 74 ~~~~v~~~-~~~~~~~~d~IIavGGGsv~D~aK~vA-~~~----~~p~i~IPTT~~tg 125 (354)
T 3ce9_A 74 DFDEIGTN-AFKIPAEVDALIGIGGGKAIDAVKYMA-FLR----KLPFISVPTSTSND 125 (354)
T ss_dssp BHHHHHHH-HTTSCTTCCEEEEEESHHHHHHHHHHH-HHH----TCCEEEEESCCSSG
T ss_pred CHHHHHHH-HHhhhcCCCEEEEECChHHHHHHHHHH-hhc----CCCEEEecCcccCC
Confidence 35677888 888889999999999988888887777 432 47899999877654
No 62
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=55.36 E-value=19 Score=37.47 Aligned_cols=52 Identities=19% Similarity=0.301 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccC
Q 042388 168 TPEQFKQAEETAKKLDL---DGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 222 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~i---d~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 222 (567)
+.+.++++.+.+.+.++ |.+|-+||--.++.|..+|-.+. + .+++|.||-|.
T Consensus 85 t~~~v~~~~~~l~~~~~~r~d~IIavGGGsv~D~ak~~Aa~~~-r--gip~i~IPTTl 139 (368)
T 3qbe_A 85 DLPVVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFAAATWL-R--GVSIVHLPTTL 139 (368)
T ss_dssp BHHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHGG-G--CCEEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHhc-c--CCcEEEECCCC
Confidence 45778999999998875 99999999888888877775433 3 46899999875
No 63
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=55.19 E-value=16 Score=35.33 Aligned_cols=103 Identities=16% Similarity=0.111 Sum_probs=59.4
Q ss_pred CCCcEEEEEec----CCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCccccccc
Q 042388 87 NKSLKIGVVLS----GGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSG 162 (567)
Q Consensus 87 ~~~~~IgIv~s----GG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~ 162 (567)
.+..+|||++. .-.-|=...++.|+-+++++. |..+.-+. ...
T Consensus 4 ~~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~------------------------~~~------- 50 (294)
T 3qk7_A 4 GRTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKR--GLDLLLIP------------------------DEP------- 50 (294)
T ss_dssp -CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHT--TCEEEEEE------------------------ECT-------
T ss_pred CccceEEEEecCCCccccChhHHHHHHHHHHHHHHC--CCEEEEEe------------------------CCC-------
Confidence 34579999997 556677778888888886543 33332110 000
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 163 RDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 163 R~k~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
. ++....++.+...++||+|+.+.+.+.... +.+.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 51 ---~---~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~----~~l~~~~--iPvV~~----~~~~~~~~~-~~V~~D~ 110 (294)
T 3qk7_A 51 ---G---EKYQSLIHLVETRRVDALIVAHTQPEDFRL----QYLQKQN--FPFLAL----GRSHLPKPY-AWFDFDN 110 (294)
T ss_dssp ---T---CCCHHHHHHHHHTCCSEEEECSCCSSCHHH----HHHHHTT--CCEEEE----SCCCCSSCC-EEEEECH
T ss_pred ---h---hhHHHHHHHHHcCCCCEEEEeCCCCChHHH----HHHHhCC--CCEEEE----CCCCCCCCC-CEEEcCh
Confidence 0 112356777888999999999987644222 2333344 567754 444433332 3566654
No 64
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=54.41 E-value=95 Score=29.44 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=60.6
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKI 166 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~ 166 (567)
.+..+|||++..-..|-...++.|+-++++.. +.++. + .+..+
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~----------------~--------~~~~~----------- 48 (285)
T 3c3k_A 6 AKTGMLLVMVSNIANPFCAAVVKGIEKTAEKN--GYRIL----------------L--------CNTES----------- 48 (285)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCEEE----------------E--------EECTT-----------
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHHHHHc--CCEEE----------------E--------EeCCC-----------
Confidence 34579999998777788888889988886542 22211 0 01111
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 167 ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 167 ~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
+.+.....++.+...++||+|+.+.+.+.. .+ +.+. . +++||.+ |.+.....+ .++++|-
T Consensus 49 -~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~---~~-~~l~-~--~iPvV~~----~~~~~~~~~-~~V~~D~ 108 (285)
T 3c3k_A 49 -DLARSRSCLTLLSGKMVDGVITMDALSELP---EL-QNII-G--AFPWVQC----AEYDPLSTV-SSVSIDD 108 (285)
T ss_dssp -CHHHHHHHTHHHHTTCCSEEEECCCGGGHH---HH-HHHH-T--TSSEEEE----SSCCTTSSS-CEEECCH
T ss_pred -CHHHHHHHHHHHHhCCCCEEEEeCCCCChH---HH-HHHh-c--CCCEEEE----ccccCCCCC-CEEEECh
Confidence 233445667778889999999998765432 22 2333 3 4677765 333332222 3566654
No 65
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=52.54 E-value=46 Score=35.50 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHHHc---CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 168 TPEQFKQAEETAKKL---DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~---~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
+++++.++++.++++ +.||+||.=|-|||.-.+.+-.++.+ +.+.+||-.
T Consensus 150 tp~~w~~La~~I~~~~~~~~DG~VItHGTDTMeeTA~~Lsl~l~-~~~KPVVlT 202 (438)
T 1zq1_A 150 KPKHWVKIAHEVAKALNSGDYGVVVAHGTDTMGYTAAALSFMLR-NLGKPVVLV 202 (438)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSEEEEECCSSSHHHHHHHHHHHEE-SCCSCEEEE
T ss_pred CHHHHHHHHHHHHHHhccCCCeEEEecCchhHHHHHHHHHHHHh-CCCCCEEEe
Confidence 678888887777766 89999999999999775555455442 334566654
No 66
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=51.48 E-value=73 Score=30.05 Aligned_cols=31 Identities=23% Similarity=0.132 Sum_probs=25.6
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHH
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQE 117 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~ 117 (567)
.+..+|||++..-..|-...++.|+-+.++.
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~ 36 (277)
T 3cs3_A 6 RQTNIIGVYLADYGGSFYGELLEGIKKGLAL 36 (277)
T ss_dssp CCCCEEEEEECSSCTTTHHHHHHHHHHHHHT
T ss_pred cCCcEEEEEecCCCChhHHHHHHHHHHHHHH
Confidence 3457999999888888889999999988653
No 67
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=51.01 E-value=22 Score=36.63 Aligned_cols=52 Identities=23% Similarity=0.272 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccC
Q 042388 168 TPEQFKQAEETAKKLDL---DGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 222 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~i---d~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 222 (567)
+.+.++++.+.+.+.++ |.+|-+||--.++.|...|-.+. + .+++|.||-|.
T Consensus 76 ~~~~v~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~~-r--gip~i~IPTTl 130 (368)
T 2gru_A 76 TLSTVTNLQERAIALGANRRTAIVAVGGGLTGNVAGVAAGMMF-R--GIALIHVPTTF 130 (368)
T ss_dssp SHHHHHHHHHHHHHTTCCTTEEEEEEESHHHHHHHHHHHHHBT-T--CCEEEEEECSH
T ss_pred CHHHHHHHHHHHHhcCCCCCcEEEEECChHHHHHHHHHHHHhc-C--CCCEEEECCch
Confidence 56788999999999995 99999999877777776665332 3 47899999875
No 68
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp}
Probab=50.52 E-value=1.2e+02 Score=31.08 Aligned_cols=49 Identities=18% Similarity=0.258 Sum_probs=35.7
Q ss_pred ChHHHHHHHHHHHHc---CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 168 TPEQFKQAEETAKKL---DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~---~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
+++++.++.+.++++ +.|++||.=|-|||.-.+.+-.... +.+.+||-.
T Consensus 70 ~~~~~~~la~~i~~~~~~~~dGvVItHGTDTm~~TA~~L~~~l--~~~kPVVlT 121 (334)
T 3nxk_A 70 CDEIWLRLAKKIAKLFAEGIDGVVITHGTDTMEETAYFLNLTI--KSDKPVVLV 121 (334)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHC--CCCSCEEEE
T ss_pred CHHHHHHHHHHHHHHhhcCCCeEEEECCCchHHHHHHHHHHHc--CCCCCEEEE
Confidence 678888888877764 7999999999999976555444544 344566654
No 69
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=49.59 E-value=41 Score=32.08 Aligned_cols=93 Identities=12% Similarity=0.195 Sum_probs=49.6
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeC---CcccccCCCEEEcCccccccccccCCcccccccCCCC
Q 042388 90 LKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKG---GPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKI 166 (567)
Q Consensus 90 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~---G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~ 166 (567)
+||||+.||.-. .+..++++++....+.+|.++.- ...|+ .+...=|-..+--...++
T Consensus 1 ~riaVl~SG~Gs-----~L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~~--------------~~A~~~gIp~~~~~~~~~ 61 (209)
T 1meo_A 1 ARVAVLISGTGS-----NLQALIDSTREPNSSAQIDIVISNKAAVAGL--------------DKAERAGIPTRVINHKLY 61 (209)
T ss_dssp CEEEEEESSSCT-----THHHHHHHHHSTTCSCEEEEEEESSTTCHHH--------------HHHHHTTCCEEECCGGGS
T ss_pred CeEEEEEECCch-----HHHHHHHHHhcCCCCcEEEEEEeCCCChHHH--------------HHHHHcCCCEEEECcccc
Confidence 489999999763 35555555443333567777652 22221 111111222221122223
Q ss_pred CChHHH-HHHHHHHHHcCCCEEEEecCchhHHHHHHH
Q 042388 167 ETPEQF-KQAEETAKKLDLDGLVVIGGDDSNTNACLL 202 (567)
Q Consensus 167 ~~~e~~-~~~~~~l~~~~id~LViIGGddS~t~A~~L 202 (567)
.+.+.+ +.+.+.+++++.|.+|+.| .+-+-....|
T Consensus 62 ~~r~~~~~~~~~~l~~~~~Dliv~a~-y~~il~~~~l 97 (209)
T 1meo_A 62 KNRVEFDSAIDLVLEEFSIDIVCLAG-FMRILSGPFV 97 (209)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEES-CCSCCCHHHH
T ss_pred CchhhhhHHHHHHHHhcCCCEEEEcc-hhhhCCHHHH
Confidence 455555 4578889999999887776 4433333444
No 70
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=48.70 E-value=2e+02 Score=28.04 Aligned_cols=89 Identities=16% Similarity=0.170 Sum_probs=55.2
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKI 166 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~ 166 (567)
.+..+|||++..-..|-...++.|+-++++.. |.++. + .+..
T Consensus 56 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~----------------~--------~~~~------------ 97 (340)
T 1qpz_A 56 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQK--GYTLI----------------L--------GNAW------------ 97 (340)
T ss_dssp TCCSEEEEEESCSCSHHHHHHHHHHHHHHHHT--TCEEE----------------E--------EECT------------
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEE----------------E--------EeCC------------
Confidence 34579999998777788888899998886542 22211 0 0111
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 167 ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 167 ~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
.+.+.....++.+...++||+|+.+.+.+.... +.+.+. .+++||.+
T Consensus 98 ~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~----~~l~~~-~~iPvV~~ 144 (340)
T 1qpz_A 98 NNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLL----AMLEEY-RHIPMVVM 144 (340)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHH----HHHHTT-TTSCEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCEEEEeCCCCChHHH----HHHHhh-CCCCEEEE
Confidence 133445567788889999999999877543222 223221 24567765
No 71
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=48.05 E-value=15 Score=36.72 Aligned_cols=42 Identities=17% Similarity=0.303 Sum_probs=31.3
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCC
Q 042388 183 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLK 227 (567)
Q Consensus 183 ~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 227 (567)
+.|.+|++|||||...+.. .+...+.++++-.+|.==-||+.
T Consensus 63 ~~d~vv~~GGDGTl~~v~~---~l~~~~~~~~l~iiP~Gt~N~~a 104 (304)
T 3s40_A 63 KVDLIIVFGGDGTVFECTN---GLAPLEIRPTLAIIPGGTCNDFS 104 (304)
T ss_dssp TCSEEEEEECHHHHHHHHH---HHTTCSSCCEEEEEECSSCCHHH
T ss_pred CCCEEEEEccchHHHHHHH---HHhhCCCCCcEEEecCCcHHHHH
Confidence 8899999999999876532 23333356789999987778876
No 72
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=48.03 E-value=16 Score=37.82 Aligned_cols=48 Identities=23% Similarity=0.265 Sum_probs=39.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEeccc
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT 221 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT 221 (567)
+.+.++++.+.+++ +.|.+|-|||--.++.|..+| +++ .+++|.||-|
T Consensus 80 ~~~~v~~~~~~~~~-~~d~IIavGGGsv~D~aK~iA-~~~----~~p~i~IPTT 127 (376)
T 1kq3_A 80 SDEEIERLSGLVEE-ETDVVVGIGGGKTLDTAKAVA-YKL----KKPVVIVPTI 127 (376)
T ss_dssp BHHHHHHHHTTCCT-TCCEEEEEESHHHHHHHHHHH-HHT----TCCEEEEESS
T ss_pred CHHHHHHHHHHHhc-CCCEEEEeCCcHHHHHHHHHH-Hhc----CCCEEEecCc
Confidence 34678888888888 999999999988888888777 332 5789999988
No 73
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=47.56 E-value=49 Score=31.51 Aligned_cols=98 Identities=11% Similarity=0.089 Sum_probs=50.5
Q ss_pred CcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCC
Q 042388 89 SLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIET 168 (567)
Q Consensus 89 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~ 168 (567)
++||+|++||... ....+++++....-+.++.++.--.. + ..+..+...=|-..+--.+.++.+
T Consensus 3 m~ki~vl~sG~g~-----~~~~~l~~l~~~~l~~~I~~Vit~~~-----~------~~v~~~A~~~gIp~~~~~~~~~~~ 66 (212)
T 3av3_A 3 MKRLAVFASGSGT-----NFQAIVDAAKRGDLPARVALLVCDRP-----G------AKVIERAARENVPAFVFSPKDYPS 66 (212)
T ss_dssp CEEEEEECCSSCH-----HHHHHHHHHHTTCCCEEEEEEEESST-----T------CHHHHHHHHTTCCEEECCGGGSSS
T ss_pred CcEEEEEEECCcH-----HHHHHHHHHHhCCCCCeEEEEEeCCC-----C------cHHHHHHHHcCCCEEEeCcccccc
Confidence 4799999999843 23345555443222456665542110 0 112222222233232222233445
Q ss_pred hHHHH-HHHHHHHHcCCCEEEEecCchhHHHHHHHH
Q 042388 169 PEQFK-QAEETAKKLDLDGLVVIGGDDSNTNACLLA 203 (567)
Q Consensus 169 ~e~~~-~~~~~l~~~~id~LViIGGddS~t~A~~La 203 (567)
.+.++ ..++.+++++.|.+|+.| .+-.-....|.
T Consensus 67 ~~~~~~~~~~~l~~~~~Dliv~a~-y~~il~~~~l~ 101 (212)
T 3av3_A 67 KAAFESEILRELKGRQIDWIALAG-YMRLIGPTLLS 101 (212)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEESS-CCSCCCHHHHH
T ss_pred hhhhHHHHHHHHHhcCCCEEEEch-hhhhCCHHHHh
Confidence 55554 568889999999777764 55444444453
No 74
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=46.65 E-value=1.1e+02 Score=29.19 Aligned_cols=87 Identities=16% Similarity=0.126 Sum_probs=56.6
Q ss_pred CcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCC
Q 042388 89 SLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIET 168 (567)
Q Consensus 89 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~ 168 (567)
+.+|||++..-.-|=...++.|+-++++.. +.++. +.+ + .+
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~------------------------~~~---------~----~~ 42 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDL--GFEVI------------------------KIA---------V----PD 42 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHH--TEEEE------------------------EEE---------C----CS
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHc--CCEEE------------------------EeC---------C----CC
Confidence 579999999888888899999999887653 11111 000 0 13
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 169 PEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
.+...+.++.+...++|++|+.+-+..... ..+ +.+.+.+ ++||.+
T Consensus 43 ~~~~~~~i~~l~~~~vdgiii~~~~~~~~~-~~~-~~~~~~~--iPvV~~ 88 (306)
T 8abp_A 43 GEKTLNAIDSLAASGAKGFVICTPDPKLGS-AIV-AKARGYD--MKVIAV 88 (306)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECSCGGGHH-HHH-HHHHHTT--CEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCchhhH-HHH-HHHHHCC--CcEEEe
Confidence 345567788888899999999998765322 112 2333344 567755
No 75
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=45.65 E-value=1e+02 Score=29.13 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=50.1
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKI 166 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~ 166 (567)
.+..+|||++..-..|-...++.|+-++++.. +.++.-+ +..+ .
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~--g~~~~~~------------------------~~~~----------~ 46 (304)
T 3o1i_D 3 GSDEKICAIYPHLKDSYWLSVNYGMVSEAEKQ--GVNLRVL------------------------EAGG----------Y 46 (304)
T ss_dssp --CCEEEEEESCSCSHHHHHHHHHHHHHHHHH--TCEEEEE------------------------ECSS----------T
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHHc--CCeEEEE------------------------cCCC----------C
Confidence 34679999999888899999999999887654 2222110 0111 0
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchh
Q 042388 167 ETPEQFKQAEETAKKLDLDGLVVIGGDDS 195 (567)
Q Consensus 167 ~~~e~~~~~~~~l~~~~id~LViIGGddS 195 (567)
.+.+...+.++.+...++|++|+.+.+..
T Consensus 47 ~~~~~~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 47 PNKSRQEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEECCSSTT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 13455667788888899999999987755
No 76
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=45.49 E-value=19 Score=38.47 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEeccc
Q 042388 169 PEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT 221 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT 221 (567)
.+.++++.+.+++ +.|.+|-|||--.++.|..+| ++ . .+++|.||-|
T Consensus 132 ~~~v~~~~~~~~~-~~D~IIAvGGGSviD~AK~iA-~~--~--giP~I~IPTT 178 (450)
T 1ta9_A 132 LVELDKLRKQCPD-DTQVIIGVGGGKTMDSAKYIA-HS--M--NLPSIICPTT 178 (450)
T ss_dssp HHHHHHHHTTSCT-TCCEEEEEESHHHHHHHHHHH-HH--T--TCCEEEEESS
T ss_pred HHHHHHHHHHHhh-CCCEEEEeCCcHHHHHHHHHH-Hh--c--CCCEEEEeCC
Confidence 3567778888888 999999999988888888887 33 2 5789999998
No 77
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=45.06 E-value=2e+02 Score=26.92 Aligned_cols=89 Identities=13% Similarity=0.132 Sum_probs=55.1
Q ss_pred CCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCC
Q 042388 88 KSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIE 167 (567)
Q Consensus 88 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~ 167 (567)
+..+|||++..-..|-...++.|+-++++.. |+. +.+ .+.++
T Consensus 6 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----------g~~-------~~~--------~~~~~------------ 47 (289)
T 1dbq_A 6 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQK-----------GYT-------LIL--------GNAWN------------ 47 (289)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHH-----------TCE-------EEE--------EECTT------------
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHc-----------CCe-------EEE--------EcCCC------------
Confidence 4579999998878888888999998887642 221 100 01111
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEec
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCP 219 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVP 219 (567)
+.+.....++.+...++|++|+.+.+.+..... .+.+ ..+++||.+-
T Consensus 48 ~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~----~l~~-~~~iPvV~~~ 94 (289)
T 1dbq_A 48 NLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLA----MLEE-YRHIPMVVMD 94 (289)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECSCCCHHHHH----HHHH-TTTSCEEEEE
T ss_pred ChHHHHHHHHHHHhCCCCEEEEEeccCCHHHHH----HHHh-ccCCCEEEEc
Confidence 344556678888889999999998875432222 2222 1246777653
No 78
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=45.04 E-value=73 Score=30.47 Aligned_cols=99 Identities=12% Similarity=0.112 Sum_probs=51.3
Q ss_pred CcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCC
Q 042388 89 SLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIET 168 (567)
Q Consensus 89 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~ 168 (567)
++||+|+.||+ | +| +..++++.+.-.-..+|.++.---. +..+..+...=|-...--.+.++.+
T Consensus 2 m~riavl~Sg~---G-sn-l~ali~~~~~~~l~~eI~~Visn~~-----------~a~v~~~A~~~gIp~~~~~~~~~~~ 65 (211)
T 3p9x_A 2 MKRVAIFASGS---G-TN-AEAIIQSQKAGQLPCEVALLITDKP-----------GAKVVERVKVHEIPVCALDPKTYPS 65 (211)
T ss_dssp -CEEEEECCTT---C-HH-HHHHHHHHHTTCCSSEEEEEEESCS-----------SSHHHHHHHTTTCCEEECCGGGSSS
T ss_pred CCEEEEEEeCC---c-hH-HHHHHHHHHcCCCCcEEEEEEECCC-----------CcHHHHHHHHcCCCEEEeChhhcCc
Confidence 47999999995 3 33 6677776543322346665552100 0111111111122221112223444
Q ss_pred hHHH-HHHHHHHHHcCCCEEEEecCchhHHHHHHHHH
Q 042388 169 PEQF-KQAEETAKKLDLDGLVVIGGDDSNTNACLLAE 204 (567)
Q Consensus 169 ~e~~-~~~~~~l~~~~id~LViIGGddS~t~A~~Lae 204 (567)
.+.+ +.+++.+++++.|.+|+.| .+-.-....|..
T Consensus 66 r~~~d~~~~~~l~~~~~Dliv~ag-y~~Il~~~~l~~ 101 (211)
T 3p9x_A 66 KEAYEIEVVQQLKEKQIDFVVLAG-YMRLVGPTLLGA 101 (211)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEESS-CCSCCCHHHHHH
T ss_pred hhhhHHHHHHHHHhcCCCEEEEeC-chhhcCHHHHhh
Confidence 5554 4567899999999888775 444444455543
No 79
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=44.69 E-value=1.6e+02 Score=28.68 Aligned_cols=74 Identities=24% Similarity=0.266 Sum_probs=50.2
Q ss_pred CCCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCC
Q 042388 86 ENKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDK 165 (567)
Q Consensus 86 ~~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k 165 (567)
..+..||||+..- +-|.++++-.|+.+.|++. || .+++-+++. +.|..|
T Consensus 5 ~~~~~~igi~q~~-~hp~ld~~~~G~~~~L~~~-----------G~---~~g~nv~~~------~~~a~g---------- 53 (302)
T 3lkv_A 5 MAKTAKVAVSQIV-EHPALDATRQGLLDGLKAK-----------GY---EEGKNLEFD------YKTAQG---------- 53 (302)
T ss_dssp --CCEEEEEEESC-CCHHHHHHHHHHHHHHHHT-----------TC---CBTTTEEEE------EEECTT----------
T ss_pred hcCCceEEEEEee-cChhHHHHHHHHHHHHHhh-----------Cc---ccCCcEEEE------EEeCCC----------
Confidence 3567899999874 6799999999999998753 11 222222221 334334
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecC
Q 042388 166 IETPEQFKQAEETAKKLDLDGLVVIGG 192 (567)
Q Consensus 166 ~~~~e~~~~~~~~l~~~~id~LViIGG 192 (567)
+......+++.+...+.|.+|.||.
T Consensus 54 --d~~~~~~~~~~l~~~~~DlIiai~t 78 (302)
T 3lkv_A 54 --NPAIAVQIARQFVGENPDVLVGIAT 78 (302)
T ss_dssp --CHHHHHHHHHHHHTTCCSEEEEESH
T ss_pred --CHHHHHHHHHHHHhcCCcEEEEcCC
Confidence 3456778888999999998888763
No 80
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=44.20 E-value=34 Score=32.24 Aligned_cols=102 Identities=16% Similarity=0.159 Sum_probs=61.1
Q ss_pred CcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCC
Q 042388 89 SLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIET 168 (567)
Q Consensus 89 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~ 168 (567)
..+|||++..-..|-...++.|+-+.++.. +.++. + .+..+ +
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~----------------~--------~~~~~------------~ 44 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNKA--GYQLL----------------L--------GYSDY------------S 44 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHHT--SCEEC----------------C--------EECTT------------C
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHHC--CCEEE----------------E--------EcCCC------------C
Confidence 468999998877888888889988887542 22110 0 01111 2
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 169 PEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
.+...+.++.+...++||+|+.+.+.+..... .+.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 45 ~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~----~l~~~~--iPvV~~----~~~~~~~~~-~~V~~d~ 104 (275)
T 3d8u_A 45 IEQEEKLLSTFLESRPAGVVLFGSEHSQRTHQ----LLEASN--TPVLEI----AELSSKASY-LNIGVDH 104 (275)
T ss_dssp HHHHHHHHHHHHTSCCCCEEEESSCCCHHHHH----HHHHHT--CCEEEE----SSSCSSSSS-EEECBCH
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHH----HHHhCC--CCEEEE----eeccCCCCC-CEEEECh
Confidence 34455677888889999999998765432222 233334 567765 443332222 3677664
No 81
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}
Probab=44.11 E-value=24 Score=33.75 Aligned_cols=81 Identities=12% Similarity=0.097 Sum_probs=51.7
Q ss_pred CCCEEEEEeCCcccccC---------CCEEEcCccccccccccCCcccccccCCCCCChHHHHHHHHHHHHcCCCEEEEe
Q 042388 120 NGSKLYGFKGGPAGIMK---------CKYVELSTEYIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVI 190 (567)
Q Consensus 120 ~~~~v~Gf~~G~~GLl~---------~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e~~~~~~~~l~~~~id~LViI 190 (567)
....++|+=+|..=|++ +++--++++..+.|...| .++-....| +..++++|++.+.+++.+-++++
T Consensus 21 ~~~~~i~~DgGa~~l~~~g~~Pd~ivGD~DSi~~~~~~~~~~~~--~i~~~p~eK--D~TD~e~Al~~a~~~~~~~I~i~ 96 (212)
T 3l8m_A 21 KHEHWIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQQQI--EINPYNSEK--DDTDLALGIDQAVKRGYRNIDVY 96 (212)
T ss_dssp TTSEEEEETHHHHHHHHTTCCCSEEESCCCCSCHHHHHHHHHHT--BCCCCC-----CBCHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCEEEEECHHHHHHHHCCCCccEEEeCcccCCHHHHHHHhcCC--cEEEECCcC--CCCHHHHHHHHHHHCCCCEEEEE
Confidence 34567777777665554 334445555566666654 244332233 44579999999999999999999
Q ss_pred cCch-----hHHHHHHHHH
Q 042388 191 GGDD-----SNTNACLLAE 204 (567)
Q Consensus 191 GGdd-----S~t~A~~Lae 204 (567)
|+-| ++.+...|..
T Consensus 97 Ga~GgR~DH~lani~ll~~ 115 (212)
T 3l8m_A 97 GATGGRLDHFMGALQILEK 115 (212)
T ss_dssp SCSSSCHHHHHHHHHHHTC
T ss_pred cCCCCchhHHHHHHHHHHh
Confidence 9976 4555555543
No 82
>4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A {Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A* 3pga_1
Probab=43.47 E-value=1.4e+02 Score=30.65 Aligned_cols=49 Identities=14% Similarity=0.295 Sum_probs=36.5
Q ss_pred ChHHHHHHHHHHHH----cCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 168 TPEQFKQAEETAKK----LDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 168 ~~e~~~~~~~~l~~----~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
+++++.++.+.+++ .+.|++||.=|-|||.-.+.+-.++. +.+.+||-.
T Consensus 71 t~~~w~~la~~i~~~l~~~~~dGvVItHGTDTm~~TA~~L~~~l--~~~kPVVlT 123 (337)
T 4pga_A 71 TNDDLLKLGKRVAELADSNDVDGIVITHGTDTLEETAYFLNLVQ--KTDKPIVVV 123 (337)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCSEEEEECCSTTHHHHHHHHHHHC--CCCSCEEEE
T ss_pred CHHHHHHHHHHHHHHhhccCCCeEEEECCCccHHHHHHHHHHHc--CCCCCEEEe
Confidence 67888888888877 47999999999999976555445544 445566655
No 83
>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A {Acinetobacter glutaminasificans} SCOP: c.88.1.1
Probab=42.29 E-value=46 Score=34.01 Aligned_cols=49 Identities=12% Similarity=0.266 Sum_probs=36.4
Q ss_pred ChHHHHHHHHHHHHc----CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 168 TPEQFKQAEETAKKL----DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~----~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
+++++.++.+.++++ +.||+||.=|-|||.-.+.+-..+.+ .+.+||-.
T Consensus 63 t~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~--~~kPVVlT 115 (331)
T 1agx_A 63 TDKELLSLARQVNDLVKKPSVNGVVITHGTDTMEETAFFLNLVVH--TDKPIVLV 115 (331)
T ss_dssp CHHHHHHHHHHHHHHHTSTTCCEEEEECCGGGHHHHHHHHHHHCC--CSSCEEEE
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEecCcchHHHHHHHHHHHcC--CCCCEEEe
Confidence 678888888887775 79999999999999775555455544 34466655
No 84
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=42.25 E-value=1.2e+02 Score=29.09 Aligned_cols=89 Identities=12% Similarity=0.082 Sum_probs=54.4
Q ss_pred CcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCC
Q 042388 89 SLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIET 168 (567)
Q Consensus 89 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~ 168 (567)
+.+||+++.....|-...++.|+-+.++.. |.++. + .+..+ +
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~l~----------------~--------~~~~~------------~ 43 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKR--GITLK----------------I--------ADGQQ------------K 43 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHH--TCEEE----------------E--------EECTT------------C
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHc--CCEEE----------------E--------eCCCC------------C
Confidence 479999999888888888899998887643 21111 0 01111 2
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEec
Q 042388 169 PEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCP 219 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVP 219 (567)
.+...+.++.+...++||+|+.+.+.+... ..+ +.+.+.+ ++||.+-
T Consensus 44 ~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~~-~~~~~~~--iPvV~~~ 90 (306)
T 2vk2_A 44 QENQIKAVRSFVAQGVDAIFIAPVVATGWE-PVL-KEAKDAE--IPVFLLD 90 (306)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCSSSSSCH-HHH-HHHHHTT--CCEEEES
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCChhhHH-HHH-HHHHHCC--CCEEEec
Confidence 344456677888889999999987653111 112 2233334 5677653
No 85
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=41.20 E-value=2.3e+02 Score=27.39 Aligned_cols=88 Identities=18% Similarity=0.205 Sum_probs=54.4
Q ss_pred CCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCC
Q 042388 88 KSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIE 167 (567)
Q Consensus 88 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~ 167 (567)
+..+||+++..-..|-...++.|+-++++.. |.++. + .+..+
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~----------------~--------~~~~~------------ 103 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASMY--KYNMI----------------L--------ANSDN------------ 103 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHHT--TCEEE----------------E--------EECTT------------
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--CCEEE----------------E--------EECCC------------
Confidence 4579999998777788888889988886542 22211 0 01111
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEec
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCP 219 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVP 219 (567)
+.+.....++.+...++||+|+.+.+.+..... .+.+.+ ++||.+-
T Consensus 104 ~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~----~l~~~~--iPvV~~~ 149 (332)
T 2o20_A 104 DVEKEEKVLETFLSKQVDGIVYMGSSLDEKIRT----SLKNSR--TPVVLVG 149 (332)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECSSCCCHHHHH----HHHHHC--CCEEEES
T ss_pred ChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHH----HHHhCC--CCEEEEc
Confidence 234445677888889999999998754432222 233334 5677653
No 86
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=41.09 E-value=1.3e+02 Score=30.31 Aligned_cols=121 Identities=7% Similarity=0.053 Sum_probs=60.1
Q ss_pred ChhHHHhhCCcccCCC--eeEEecCCcccccCCCCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCccc
Q 042388 56 NPEEIKKLFPKLFGQP--SARLVECDPKACSMENKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAG 133 (567)
Q Consensus 56 ~~~~i~~~fp~~~~~p--~~~~~~~~~~~~~~~~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~G 133 (567)
+.+++++-|..+...- .+++.. ...++||+|+.||.. +| +..++++.+.-.-..++-++.---.
T Consensus 78 ~~~~L~~~l~~la~~l~m~~~l~~--------~~~~~ri~vl~Sg~g----~n-l~~ll~~~~~g~l~~~I~~Visn~~- 143 (302)
T 3o1l_A 78 DLDGFREAFTPIAEEFSMDWRITD--------SAQKKRVVLMASRES----HC-LADLLHRWHSDELDCDIACVISNHQ- 143 (302)
T ss_dssp CHHHHHHHHHHHHHHHTCEEEEEE--------TTSCCEEEEEECSCC----HH-HHHHHHHHHTTCSCSEEEEEEESSS-
T ss_pred CHHHHHHHHHHHHHHhCCeeeecc--------cCCCcEEEEEEeCCc----hh-HHHHHHHHHCCCCCcEEEEEEECcH-
Confidence 4667776664433211 123322 234689999999982 33 5666665443222356665542111
Q ss_pred ccCCCEEEcCccccccccccCCcccccccCCCCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHH
Q 042388 134 IMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLA 203 (567)
Q Consensus 134 Ll~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~La 203 (567)
++..+...=|-...--...+...++.-+++++.+++++.|.+|+.| .+-.-....|.
T Consensus 144 ------------~~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVlag-ym~IL~~~~l~ 200 (302)
T 3o1l_A 144 ------------DLRSMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLAR-YMQILPPQLCR 200 (302)
T ss_dssp ------------TTHHHHHTTTCCEEECCCCSSCCHHHHHHHHHHHHHTTCSEEEESS-CCSCCCTTHHH
T ss_pred ------------HHHHHHHHcCCCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEHhH-hhhhcCHHHHh
Confidence 1112211122222211112222233345688999999999777765 44333334443
No 87
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=40.89 E-value=1.2e+02 Score=29.09 Aligned_cols=101 Identities=17% Similarity=0.223 Sum_probs=52.5
Q ss_pred CCCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCC
Q 042388 86 ENKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDK 165 (567)
Q Consensus 86 ~~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k 165 (567)
...++||+|+.||... ....+++++.....+.++.++.--.. +..+..+...=|-..+--.+.+
T Consensus 19 ~~~~~rI~~l~SG~g~-----~~~~~l~~l~~~~~~~~I~~Vvt~~~-----------~~~~~~~A~~~gIp~~~~~~~~ 82 (229)
T 3auf_A 19 QGHMIRIGVLISGSGT-----NLQAILDGCREGRIPGRVAVVISDRA-----------DAYGLERARRAGVDALHMDPAA 82 (229)
T ss_dssp BTTCEEEEEEESSCCH-----HHHHHHHHHHTTSSSEEEEEEEESST-----------TCHHHHHHHHTTCEEEECCGGG
T ss_pred cCCCcEEEEEEeCCcH-----HHHHHHHHHHhCCCCCeEEEEEcCCC-----------chHHHHHHHHcCCCEEEECccc
Confidence 3456899999999852 24455555543322456666652110 0011111112233232222233
Q ss_pred CCChHHH-HHHHHHHHHcCCCEEEEecCchhHHHHHHHH
Q 042388 166 IETPEQF-KQAEETAKKLDLDGLVVIGGDDSNTNACLLA 203 (567)
Q Consensus 166 ~~~~e~~-~~~~~~l~~~~id~LViIGGddS~t~A~~La 203 (567)
+.+.+.+ +.+++.+++++.|.+|+.| .+-.-....|.
T Consensus 83 ~~~r~~~~~~~~~~l~~~~~Dliv~ag-y~~IL~~~~l~ 120 (229)
T 3auf_A 83 YPSRTAFDAALAERLQAYGVDLVCLAG-YMRLVRGPMLT 120 (229)
T ss_dssp SSSHHHHHHHHHHHHHHTTCSEEEESS-CCSCCCHHHHH
T ss_pred ccchhhccHHHHHHHHhcCCCEEEEcC-hhHhCCHHHHh
Confidence 4444555 4568889999999777765 55444444453
No 88
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=40.85 E-value=2.3e+02 Score=27.40 Aligned_cols=107 Identities=17% Similarity=0.187 Sum_probs=58.2
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKI 166 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~ 166 (567)
.+..+|||++.. ..|=...++.|+-++++.. .+.++. +.+..+
T Consensus 4 ~~~~~Igvi~~~-~~~~~~~~~~gi~~~a~~~-~g~~l~------------------------i~~~~~----------- 46 (325)
T 2x7x_A 4 TPHFRIGVAQCS-DDSWRHKMNDEILREAMFY-NGVSVE------------------------IRSAGD----------- 46 (325)
T ss_dssp --CCEEEEEESC-CSHHHHHHHHHHHHHHTTS-SSCEEE------------------------EEECTT-----------
T ss_pred CCCeEEEEEecC-CCHHHHHHHHHHHHHHHHc-CCcEEE------------------------EeCCCC-----------
Confidence 345799999977 6666677778887775421 021111 001111
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 167 ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 167 ~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
+.+.....++.+...++||+|+.+.+.+... ..+ +.+.+.+ ++||.+ |++......-.++++|-
T Consensus 47 -~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~~-~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 110 (325)
T 2x7x_A 47 -DNSKQAEDVHYFMDEGVDLLIISANEAAPMT-PIV-EEAYQKG--IPVILV----DRKILSDKYTAYIGADN 110 (325)
T ss_dssp -CHHHHHHHHHHHHHTTCSEEEECCSSHHHHH-HHH-HHHHHTT--CCEEEE----SSCCSSSCSSEEEEECH
T ss_pred -CHHHHHHHHHHHHHcCCCEEEEeCCCHHHHH-HHH-HHHHHCC--CeEEEe----CCCCCCcceeEEEecCH
Confidence 2344456677788899999999987654211 122 3344444 567766 34333211113566654
No 89
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=38.60 E-value=94 Score=29.54 Aligned_cols=97 Identities=13% Similarity=0.152 Sum_probs=51.8
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCCh
Q 042388 90 LKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETP 169 (567)
Q Consensus 90 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~ 169 (567)
+||+|+.||.-. .+..++++++....+.++.++.--.. +.....+...=|-..+--.+.++.+.
T Consensus 1 ~ri~vl~Sg~gs-----nl~ali~~~~~~~~~~~i~~Vis~~~-----------~~~~~~~A~~~gIp~~~~~~~~~~~r 64 (212)
T 1jkx_A 1 MNIVVLISGNGS-----NLQAIIDACKTNKIKGTVRAVFSNKA-----------DAFGLERARQAGIATHTLIASAFDSR 64 (212)
T ss_dssp CEEEEEESSCCH-----HHHHHHHHHHTTSSSSEEEEEEESCT-----------TCHHHHHHHHTTCEEEECCGGGCSSH
T ss_pred CEEEEEEECCcH-----HHHHHHHHHHcCCCCceEEEEEeCCC-----------chHHHHHHHHcCCcEEEeCcccccch
Confidence 489999999763 26667776654333467766652110 00111111122333332222334444
Q ss_pred HHH-HHHHHHHHHcCCCEEEEecCchhHHHHHHHH
Q 042388 170 EQF-KQAEETAKKLDLDGLVVIGGDDSNTNACLLA 203 (567)
Q Consensus 170 e~~-~~~~~~l~~~~id~LViIGGddS~t~A~~La 203 (567)
+.+ +.+++.+++++.|.+|+.| .+-.-....|.
T Consensus 65 ~~~~~~~~~~l~~~~~Dliv~ag-y~~il~~~~l~ 98 (212)
T 1jkx_A 65 EAYDRELIHEIDMYAPDVVVLAG-FMRILSPAFVS 98 (212)
T ss_dssp HHHHHHHHHHHGGGCCSEEEESS-CCSCCCHHHHH
T ss_pred hhccHHHHHHHHhcCCCEEEEeC-hhhhCCHHHHh
Confidence 555 4567889999999777764 55444444443
No 90
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=38.30 E-value=2.5e+02 Score=26.09 Aligned_cols=100 Identities=14% Similarity=0.088 Sum_probs=55.3
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKI 166 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~ 166 (567)
.+..+|||++..-.-|=...++.|+-+.++.. +.++.-+ +..+
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~------------------------~~~~----------- 48 (277)
T 3e61_A 6 RKSKLIGLLLPDMSNPFFTLIARGVEDVALAH--GYQVLIG------------------------NSDN----------- 48 (277)
T ss_dssp ----CEEEEESCTTSHHHHHHHHHHHHHHHHT--TCCEEEE------------------------ECTT-----------
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHC--CCEEEEE------------------------eCCC-----------
Confidence 34578999998888888889999998887643 3322211 0111
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHH-HHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 167 ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAE-NFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 167 ~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae-~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
+.+.....++.+...++||+|+.+.+.. . + + .+.+.+ ++||.+ |++..... ++++|-
T Consensus 49 -~~~~~~~~~~~l~~~~~dgiIi~~~~~~--~---~-~~~l~~~~--iPvV~~----~~~~~~~~---~V~~D~ 106 (277)
T 3e61_A 49 -DIKKAQGYLATFVSHNCTGMISTAFNEN--I---I-ENTLTDHH--IPFVFI----DRINNEHN---GISTNH 106 (277)
T ss_dssp -CHHHHHHHHHHHHHTTCSEEEECGGGHH--H---H-HHHHHHC---CCEEEG----GGCC------------H
T ss_pred -CHHHHHHHHHHHHhCCCCEEEEecCChH--H---H-HHHHHcCC--CCEEEE----eccCCCCC---eEEech
Confidence 2345567788889999999999983321 1 2 2 334444 567754 55554332 556553
No 91
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=38.26 E-value=1.5e+02 Score=27.95 Aligned_cols=104 Identities=19% Similarity=0.155 Sum_probs=58.6
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCCh
Q 042388 90 LKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETP 169 (567)
Q Consensus 90 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~ 169 (567)
.+|||++..-..|-...++.|+-+.++.. |.++. . .+..+ +.
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~--g~~~~---------------~---------~~~~~------------~~ 43 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKEL--GYKII---------------V---------EDSQN------------DS 43 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHH--TCEEE---------------E---------EECTT------------CH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhc--CcEEE---------------E---------ecCCC------------CH
Confidence 58999998877788888899988887543 21111 0 01111 22
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 170 EQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 170 e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
+...+.++.+...++||+|+.+.+.+... ..+ +.+.+.+ ++||.+ |.+........+++.|-
T Consensus 44 ~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~~-~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 105 (283)
T 2ioy_A 44 SKELSNVEDLIQQKVDVLLINPVDSDAVV-TAI-KEANSKN--IPVITI----DRSANGGDVVCHIASDN 105 (283)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSSTTTTH-HHH-HHHHHTT--CCEEEE----SSCCSSSCCSEEEEECH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchhhhH-HHH-HHHHHCC--CeEEEe----cCCCCCcceeEEEecCh
Confidence 33345677778899999999876543211 122 2333344 567755 44443221113566663
No 92
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=37.88 E-value=1.1e+02 Score=27.57 Aligned_cols=92 Identities=17% Similarity=0.147 Sum_probs=57.4
Q ss_pred CCcEEEEEecCCCCchhh-HHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccc-cccccccCCcccccccCCC
Q 042388 88 KSLKIGVVLSGGQAPGGH-NVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEY-IYPYRNQGGFDMICSGRDK 165 (567)
Q Consensus 88 ~~~~IgIv~sGG~aPG~n-nvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~-v~~~~n~GG~~~LGS~R~k 165 (567)
...+|-+.+.||+.--+- ++++.+++. .|++|+ .+ |. . .+.+. ++..+.. +.+++|-|-..
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~-----~G~eVi-~l-G~---~------~p~e~lv~aa~~~-~~diV~lS~~~ 79 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRD-----AGFEVV-YT-GL---R------QTPEQVAMAAVQE-DVDVIGVSILN 79 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHH-----TTCEEE-CC-CS---B------CCHHHHHHHHHHT-TCSEEEEEESS
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHH-----CCCEEE-EC-CC---C------CCHHHHHHHHHhc-CCCEEEEEeec
Confidence 456888888888874433 444544432 466765 11 11 1 34443 3444444 44788866544
Q ss_pred CCChHHHHHHHHHHHHcCC-CEEEEecCchhH
Q 042388 166 IETPEQFKQAEETAKKLDL-DGLVVIGGDDSN 196 (567)
Q Consensus 166 ~~~~e~~~~~~~~l~~~~i-d~LViIGGddS~ 196 (567)
-.+.+.+.+.++.|++.++ +..|++||.-..
T Consensus 80 ~~~~~~~~~~i~~L~~~g~~~i~v~vGG~~~~ 111 (161)
T 2yxb_A 80 GAHLHLMKRLMAKLRELGADDIPVVLGGTIPI 111 (161)
T ss_dssp SCHHHHHHHHHHHHHHTTCTTSCEEEEECCCH
T ss_pred hhhHHHHHHHHHHHHhcCCCCCEEEEeCCCch
Confidence 4467888999999999887 688999996543
No 93
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=37.60 E-value=1.5e+02 Score=28.01 Aligned_cols=104 Identities=21% Similarity=0.197 Sum_probs=54.6
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKI 166 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~ 166 (567)
.+..+|||++..-..|=...++.|+-+.++. .+.++.-+ + +..+
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--~g~~~~~~----------------------~-~~~~----------- 49 (290)
T 3clk_A 6 KSSNVIAAVVSSVRTNFAQQILDGIQEEAHK--NGYNLIIV----------------------Y-SGSA----------- 49 (290)
T ss_dssp --CCEEEEECCCCSSSHHHHHHHHHHHHHHT--TTCEEEEE----------------------C----------------
T ss_pred ccCCEEEEEeCCCCChHHHHHHHHHHHHHHH--cCCeEEEE----------------------e-CCCC-----------
Confidence 3457999999888888888999999888653 22221100 0 0111
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 167 ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 167 ~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
+.+.....++.+...++||+|+.+.+.+. ..+ +.+.+. +++||.+-...+++ + .++++|-
T Consensus 50 -~~~~~~~~~~~l~~~~vdgiI~~~~~~~~---~~~-~~l~~~--~iPvV~~~~~~~~~-----~-~~V~~D~ 109 (290)
T 3clk_A 50 -DPEEQKHALLTAIERPVMGILLLSIALTD---DNL-QLLQSS--DVPYCFLSMGFDDD-----R-PFISSDD 109 (290)
T ss_dssp -------CHHHHHHSSCCSEEEEESCC-------CH-HHHHCC----CEEEESCC--CC-----S-CEEECCH
T ss_pred -CHHHHHHHHHHHHhcCCCEEEEecccCCH---HHH-HHHHhC--CCCEEEEcCCCCCC-----C-CEEEeCh
Confidence 11112345666778899999999877542 122 334433 46787764433332 1 3566654
No 94
>1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A 1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A* 2jk0_A
Probab=37.42 E-value=52 Score=33.59 Aligned_cols=49 Identities=18% Similarity=0.267 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHHHc----CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 168 TPEQFKQAEETAKKL----DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~----~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
+++++.++.+.++++ +.||+||.=|-|||.-.+.+-..+.+ .+.+||-.
T Consensus 66 t~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~--~~kPVVlT 118 (327)
T 1o7j_A 66 TGDVVLKLSQRVNELLARDDVDGVVITHGTDTVEESAYFLHLTVK--SDKPVVFV 118 (327)
T ss_dssp CHHHHHHHHHHHHHHHTSTTCCEEEEECCSTTHHHHHHHHHHHCC--CCSCEEEE
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEecCchhHHHHHHHHHHHhC--CCCCEEEe
Confidence 678888888887775 79999999999999775555455544 34466654
No 95
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=37.08 E-value=3e+02 Score=26.68 Aligned_cols=88 Identities=16% Similarity=0.062 Sum_probs=56.0
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKI 166 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~ 166 (567)
.+..+|||++..-.-|-...++.|+-+.+... |.++.-+ +..+
T Consensus 60 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~------------------------~~~~----------- 102 (339)
T 3h5o_A 60 AKSRTVLVLIPSLANTVFLETLTGIETVLDAA--GYQMLIG------------------------NSHY----------- 102 (339)
T ss_dssp ---CEEEEEESCSTTCTTHHHHHHHHHHHHHT--TCEEEEE------------------------ECTT-----------
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHC--CCEEEEE------------------------eCCC-----------
Confidence 34578999999888888899999999887542 3332100 1111
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 167 ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 167 ~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
+.+...+.++.+...++||+|+.+-+.+.... +.+.+.+ ++||.+
T Consensus 103 -~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~----~~l~~~~--iPvV~~ 147 (339)
T 3h5o_A 103 -DAGQELQLLRAYLQHRPDGVLITGLSHAEPFE----RILSQHA--LPVVYM 147 (339)
T ss_dssp -CHHHHHHHHHHHHTTCCSEEEEECSCCCTTHH----HHHHHTT--CCEEEE
T ss_pred -ChHHHHHHHHHHHcCCCCEEEEeCCCCCHHHH----HHHhcCC--CCEEEE
Confidence 23445677888889999999999976543222 2333344 567766
No 96
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=37.03 E-value=22 Score=29.90 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhcCCCCccEEEecccCcCCCC
Q 042388 196 NTNACLLAENFRSKDMKTRVIGCPKTIDGDLK 227 (567)
Q Consensus 196 ~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 227 (567)
......|.+.+.+.+...-|||.|++.||...
T Consensus 37 ~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~ 68 (98)
T 1iv0_A 37 EEDVEALLDFVRREGLGKLVVGLPLRTDLKES 68 (98)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCCCCCSSSC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeccCCCCCcC
Confidence 44556677777777777889999999988764
No 97
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=36.54 E-value=43 Score=33.31 Aligned_cols=88 Identities=15% Similarity=0.127 Sum_probs=56.1
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKI 166 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~ 166 (567)
.+..+|||++..-.-|-...++.|+-+.+... |.++.-+ ++..
T Consensus 68 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~------------------------~~~~----------- 110 (355)
T 3e3m_A 68 KRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQG--GLQLLLG------------------------YTAY----------- 110 (355)
T ss_dssp ---CEEEEEESCSBCHHHHHHHHHHHHHHHHT--TCEEEEE------------------------ECTT-----------
T ss_pred CCCCEEEEEeCCCCchHHHHHHHHHHHHHHHC--CCEEEEE------------------------eCCC-----------
Confidence 34568999998888888888899998886542 3332110 1111
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 167 ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 167 ~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
+.+...+.++.+...++||+|+.+.+.+.... +.+.+.+ ++||.+
T Consensus 111 -~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~----~~l~~~~--iPvV~i 155 (355)
T 3e3m_A 111 -SPEREEQLVETMLRRRPEAMVLSYDGHTEQTI----RLLQRAS--IPIVEI 155 (355)
T ss_dssp -CHHHHHHHHHHHHHTCCSEEEEECSCCCHHHH----HHHHHCC--SCEEEE
T ss_pred -ChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHH----HHHHhCC--CCEEEE
Confidence 23445677888889999999999887654322 3333344 567766
No 98
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=36.19 E-value=2.7e+02 Score=25.96 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=20.0
Q ss_pred cCchhHHHHHHHHHHHhcCCCCccEE
Q 042388 191 GGDDSNTNACLLAENFRSKDMKTRVI 216 (567)
Q Consensus 191 GGddS~t~A~~Lae~~~~~g~~i~VI 216 (567)
||.|-=|.|..||.++.++|.++-+|
T Consensus 12 gGvGKTt~a~~LA~~la~~g~~Vlli 37 (263)
T 1hyq_A 12 GGTGKTTITANLGVALAQLGHDVTIV 37 (263)
T ss_dssp SCSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 67888888889998888887664443
No 99
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
Probab=35.63 E-value=52 Score=33.65 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHHHc----CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 168 TPEQFKQAEETAKKL----DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~----~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
+++++.++.+.++++ +.||+||.=|-|||.-.+.+-..+.+ .+.+||-.
T Consensus 66 t~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~--~~kPVVlT 118 (332)
T 2wlt_A 66 NEEIWFKLAQRAQELLDDSRIQGVVITHGTDTLEESAYFLNLVLH--STKPVVLV 118 (332)
T ss_dssp CHHHHHHHHHHHHHHHTSTTCCEEEEECCSSSHHHHHHHHHHHCC--CSSCEEEE
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEecCchhHHHHHHHHHHHhC--CCCCEEEE
Confidence 678888888887765 79999999999999775555455544 34466654
No 100
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=35.43 E-value=2.5e+02 Score=27.17 Aligned_cols=93 Identities=13% Similarity=0.045 Sum_probs=56.2
Q ss_pred CCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCC
Q 042388 88 KSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIE 167 (567)
Q Consensus 88 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~ 167 (567)
+..+|||++..-..|-...++.|+-++++.. |+. ++. .+..+
T Consensus 4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----------g~~------l~~---------~~~~~------------ 45 (332)
T 2rjo_A 4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKSV-----------GLP------YVP---------LTTEG------------ 45 (332)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHH-----------TCC------EEE---------EECTT------------
T ss_pred CccEEEEEecCCCcHHHHHHHHHHHHHHHHc-----------CCE------EEE---------ecCCC------------
Confidence 4579999998877888888999998887642 221 110 01111
Q ss_pred ChHHHHHHHHHHHHcC--CCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccC
Q 042388 168 TPEQFKQAEETAKKLD--LDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 222 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~--id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 222 (567)
+.+.....++.+...+ +|++|+.+.+.+... ..+ +.+.+. +++||.+-..+
T Consensus 46 ~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~-~~~-~~~~~~--~iPvV~~~~~~ 98 (332)
T 2rjo_A 46 SSEKGIADIRALLQKTGGNLVLNVDPNDSADAR-VIV-EACSKA--GAYVTTIWNKP 98 (332)
T ss_dssp CHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHH-HHH-HHHHHH--TCEEEEESCCC
T ss_pred CHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHH-HHH-HHHHHC--CCeEEEECCCC
Confidence 2344455677777788 999999987764311 112 223333 46787764433
No 101
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=34.85 E-value=2.4e+02 Score=26.31 Aligned_cols=108 Identities=16% Similarity=0.055 Sum_probs=61.3
Q ss_pred CCcEEEEEecCCC--CchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCC
Q 042388 88 KSLKIGVVLSGGQ--APGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDK 165 (567)
Q Consensus 88 ~~~~IgIv~sGG~--aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k 165 (567)
+..+|||++..-. .|-...++.|+-++++.. +.++ .+. +.. ..
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~----------------~~~--------~~~---------~~ 48 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY--EIKL----------------EFM--------APE---------KE 48 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHH--TCEE----------------EEC--------CCS---------ST
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHc--CCEE----------------EEe--------cCC---------CC
Confidence 3478999998766 788888999998887643 2211 000 000 00
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 166 IETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 166 ~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
.+.+...+.++.+...++|++|+.+.+.+... ..+ +.+.+. +++||.+ |.+......-.++++|-
T Consensus 49 -~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~-~~~-~~~~~~--~iPvV~~----~~~~~~~~~~~~V~~D~ 113 (289)
T 3brs_A 49 -EDYLVQNELIEEAIKRKPDVILLAAADYEKTY-DAA-KEIKDA--GIKLIVI----DSGMKQDIADITVATDN 113 (289)
T ss_dssp -TCHHHHHHHHHHHHHTCCSEEEECCSCTTTTH-HHH-TTTGGG--TCEEEEE----SSCCSSCCCSEEEECCH
T ss_pred -CCHHHHHHHHHHHHHhCCCEEEEeCCChHHhH-HHH-HHHHHC--CCcEEEE----CCCCCCCcceEEEeeCh
Confidence 13344556778888899999999987654211 112 223333 4677765 44333221113566654
No 102
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=34.19 E-value=2.6e+02 Score=26.22 Aligned_cols=90 Identities=10% Similarity=0.039 Sum_probs=54.2
Q ss_pred CCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCC
Q 042388 88 KSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIE 167 (567)
Q Consensus 88 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~ 167 (567)
+..+||+++.....|-...++.|+-+++++. +.++ +-+ .+..+
T Consensus 3 ~~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~--g~~~---------------~~~--------~~~~~------------ 45 (303)
T 3d02_A 3 AEKTVVNISKVDGMPWFNRMGEGVVQAGKEF--NLNA---------------SQV--------GPSST------------ 45 (303)
T ss_dssp -CEEEEEECSCSSCHHHHHHHHHHHHHHHHT--TEEE---------------EEE--------CCSSS------------
T ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHc--CCEE---------------EEE--------CCCCC------------
Confidence 3579999998777788888999998887643 2110 000 00111
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
+++.....++.+...++|++|+.+.+.+.. ...+ +.+.+.+ ++||.+
T Consensus 46 ~~~~~~~~~~~l~~~~vdgiii~~~~~~~~-~~~~-~~~~~~~--ipvV~~ 92 (303)
T 3d02_A 46 DAPQQVKIIEDLIARKVDAITIVPNDANVL-EPVF-KKARDAG--IVVLTN 92 (303)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCSCHHHH-HHHH-HHHHHTT--CEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCChHHH-HHHH-HHHHHCC--CeEEEE
Confidence 334455667778889999999988754321 1122 3333334 577765
No 103
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=33.98 E-value=14 Score=27.23 Aligned_cols=18 Identities=44% Similarity=0.732 Sum_probs=15.5
Q ss_pred HHHHhhchHHHHHHhhhc
Q 042388 369 QELFELFPKAIQEQLLLE 386 (567)
Q Consensus 369 ~~lf~~lp~~i~~ql~~~ 386 (567)
.++|+.||..||++|+..
T Consensus 18 ~eVF~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 18 QEVFKQLPADIQEEILSG 35 (48)
T ss_dssp GGGTTTSCHHHHHHHTTC
T ss_pred HHHHHHCcHHHHHHHHhc
Confidence 478999999999998854
No 104
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=33.97 E-value=3.1e+02 Score=25.99 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=63.0
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKI 166 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~ 166 (567)
.+..+|||++..-.-|=...++.|+-+.++.. |.++.-+ +..+
T Consensus 13 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~------------------------~~~~----------- 55 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAVFADMFSGVQMAASGH--STDVLLG------------------------QIDA----------- 55 (303)
T ss_dssp ----CEEEEESCTTSTTHHHHHHHHHHHHHHT--TCCEEEE------------------------ECCS-----------
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--CCEEEEE------------------------eCCC-----------
Confidence 44578999999888888999999999887643 3222210 0111
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 167 ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 167 ~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
+.+...+.++.+...++||+|+.+.+.+.. ..+ +.+.+ +++||.+ |.+... .+ .++++|-
T Consensus 56 -~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~--~~~-~~l~~---~iPvV~i----~~~~~~-~~-~~V~~D~ 115 (303)
T 3kke_A 56 -PPRGTQQLSRLVSEGRVDGVLLQRREDFDD--DML-AAVLE---GVPAVTI----NSRVPG-RV-GSVILDD 115 (303)
T ss_dssp -TTHHHHHHHHHHHSCSSSEEEECCCTTCCH--HHH-HHHHT---TSCEEEE----SCCCTT-CC-CEEEECH
T ss_pred -ChHHHHHHHHHHHhCCCcEEEEecCCCCcH--HHH-HHHhC---CCCEEEE----CCcCCC-CC-CEEEECc
Confidence 224456778889999999999999876632 123 33343 4678765 444443 22 3666653
No 105
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=33.91 E-value=1.1e+02 Score=29.17 Aligned_cols=105 Identities=13% Similarity=0.154 Sum_probs=62.2
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKI 166 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~ 166 (567)
.+..+|||++.....|=...++.|+-+.++.. |.++. +.+..+
T Consensus 18 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~------------------------~~~~~~----------- 60 (293)
T 2iks_A 18 GRTRSIGLVIPDLENTSYTRIANYLERQARQR--GYQLL------------------------IACSED----------- 60 (293)
T ss_dssp CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHT--TCEEE------------------------EEECTT-----------
T ss_pred CCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHC--CCEEE------------------------EEcCCC-----------
Confidence 34579999998877888888899998886542 22211 000111
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 167 ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 167 ~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
+.+.....++.+...++|++|+.+.+.+.. . +.+.+.+. +++||.+ |.+.....+ .++++|-
T Consensus 61 -~~~~~~~~~~~l~~~~vdgii~~~~~~~~~--~-~~~~~~~~--~iPvV~~----~~~~~~~~~-~~V~~d~ 122 (293)
T 2iks_A 61 -QPDNEMRCIEHLLQRQVDAIIVSTSLPPEH--P-FYQRWAND--PFPIVAL----DRALDREHF-TSVVGAD 122 (293)
T ss_dssp -CHHHHHHHHHHHHHTTCSEEEECCSSCTTC--H-HHHTTTTS--SSCEEEE----ESCCCTTTC-EEEEECH
T ss_pred -CHHHHHHHHHHHHHcCCCEEEEeCCCCCcH--H-HHHHHHhC--CCCEEEE----CCccCcCCC-CEEEecC
Confidence 234445677888889999999998765421 1 22333333 4567765 443332222 3566664
No 106
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=33.78 E-value=1.1e+02 Score=28.95 Aligned_cols=98 Identities=16% Similarity=0.212 Sum_probs=61.8
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCE-EEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSK-LYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDK 165 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~-v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k 165 (567)
.+..+|||++..-.-|-...++.|+-+.++.. |.+ +.- .+..+
T Consensus 8 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~------------------------~~~~~---------- 51 (277)
T 3hs3_A 8 KKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKE--GYTALIS------------------------FSTNS---------- 51 (277)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCEEEEE------------------------ECSSC----------
T ss_pred CCCCEEEEEeCCCCChhHHHHHHHHHHHHHHC--CCCEEEE------------------------EeCCC----------
Confidence 45679999999888888889999998887543 333 211 00111
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCC-CCCCCCCCCCChHh
Q 042388 166 IETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGD-LKCKEVPTSFGFDT 239 (567)
Q Consensus 166 ~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDND-L~~~~ie~S~GFdT 239 (567)
+.+...+.++.+...++||+|+.+ . .+ +.+. ..+++||.+ |.+ +....+ ++++|-
T Consensus 52 --~~~~~~~~~~~l~~~~vdgiIi~~--~------~~-~~~~--~~~iPvV~~----~~~~~~~~~~--~V~~D~ 107 (277)
T 3hs3_A 52 --DVKKYQNAIINFENNNVDGIITSA--F------TI-PPNF--HLNTPLVMY----DSANINDDIV--RIVSNN 107 (277)
T ss_dssp --CHHHHHHHHHHHHHTTCSEEEEEC--C------CC-CTTC--CCSSCEEEE----SCCCCCSSSE--EEEECH
T ss_pred --ChHHHHHHHHHHHhCCCCEEEEcc--h------HH-HHHH--hCCCCEEEE----cccccCCCCE--EEEECh
Confidence 234456678889999999999998 1 11 2222 234677754 555 554443 556553
No 107
>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus horikoshii} PDB: 1wnf_A
Probab=33.51 E-value=76 Score=32.34 Aligned_cols=50 Identities=14% Similarity=0.290 Sum_probs=37.1
Q ss_pred ChHHHHHHHHHHHHc--CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 168 TPEQFKQAEETAKKL--DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~--~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
+++++.++.+.++++ +.||+||.=|-|||.-.+.+-.++.. +.+.+||-.
T Consensus 56 t~~~w~~la~~I~~~~~~~dG~VItHGTDTmeeTA~~Ls~ll~-~~~kPVVlT 107 (328)
T 1wls_A 56 QPSDWERLAKEIEKEVWEYDGIVITHGTDTMAYSASMLSFMLR-NPPIPIVLT 107 (328)
T ss_dssp CHHHHHHHHHHHHHHTTTCSEEEEECCGGGHHHHHHHHHHHEE-SCSSEEEEE
T ss_pred CHHHHHHHHHHHHHHhccCCeEEEEcCCchHHHHHHHHHHHHh-CCCCCEEEE
Confidence 788888888888876 89999999999999776555454322 344566654
No 108
>1wsa_A Asparaginase, asparagine amidohydrolase; periplasmic; 2.20A {Wolinella succinogenes} SCOP: c.88.1.1
Probab=33.44 E-value=52 Score=33.58 Aligned_cols=49 Identities=10% Similarity=0.210 Sum_probs=35.9
Q ss_pred ChHHHHHHHHHHHHc----CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 168 TPEQFKQAEETAKKL----DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~----~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
+++++.++.+.++++ +.||+||.=|-|||.-.+.+-..+.+ .+.+||-.
T Consensus 64 t~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~--~~kPVVlT 116 (330)
T 1wsa_A 64 TGKVWLKLAKRVNELLAQKETEAVIITHGTDTMEETAFFLNLTVK--SQKPVVLV 116 (330)
T ss_dssp CHHHHHHHHHHHHHHHHSTTCCCEEEECCSSSHHHHHHHHHHHCC--CSSCEEEE
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEEcCcchHHHHHHHHHHHcC--CCCCEEEe
Confidence 678888887777765 79999999999999775555455544 34466654
No 109
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=33.13 E-value=72 Score=33.96 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHHHHc---CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 168 TPEQFKQAEETAKKL---DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~---~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
+++++.++++.++++ +.||+||.=|-|||.-.+.+-.++. +.+.+||-.
T Consensus 149 tp~~w~~La~~I~~~~~~~~DG~VItHGTDTMeeTA~~Lsl~l--~~~KPVVlT 200 (435)
T 2d6f_A 149 KPEYWVETARAVYGEIKDGADGVVVAHGTDTMHYTSAALSFML--RTPVPVVFT 200 (435)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSEEEEECCTTTHHHHHHHHHHHE--ECSSCEEEE
T ss_pred CHHHHHHHHHHHHHHhccCCCeEEEEcCcchHHHHHHHHHHHh--CCCCCEEEE
Confidence 678888887777766 8999999999999977555545544 334566654
No 110
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=32.67 E-value=1.4e+02 Score=27.91 Aligned_cols=101 Identities=14% Similarity=0.119 Sum_probs=58.0
Q ss_pred CCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEe----------------CCcccccCCCEEEcCcccccccc
Q 042388 88 KSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFK----------------GGPAGIMKCKYVELSTEYIYPYR 151 (567)
Q Consensus 88 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~----------------~G~~GLl~~~~~eLt~~~v~~~~ 151 (567)
+..+|||++..-..|=...++.|+-+.++.. |.++.-+. .++.|++ --...+.+.+..
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI--~~~~~~~~~~~~-- 77 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPK--GYRLSVIDSLTSQAGTDPITSALSMRPDGII--IAQDIPDFTVPD-- 77 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGGG--TCEEEEECSSSSCSSSCHHHHHHTTCCSEEE--EESCC---------
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHHC--CCEEEEEeCCCchHHHHHHHHHHhCCCCEEE--ecCCCChhhHhh--
Confidence 4579999999988999999999999987654 55655443 2445554 111111122222
Q ss_pred ccCCcccccccCCC----------CCChHHHHHHHHHHHHcCCCEEEEecCchhH
Q 042388 152 NQGGFDMICSGRDK----------IETPEQFKQAEETAKKLDLDGLVVIGGDDSN 196 (567)
Q Consensus 152 n~GG~~~LGS~R~k----------~~~~e~~~~~~~~l~~~~id~LViIGGddS~ 196 (567)
-|..++--.|.. ..+.+....+.+.|.+++-.-+.+++|....
T Consensus 78 --~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~ 130 (280)
T 3gyb_A 78 --SLPPFVIAGTRITQASTHDSVANDDFRGAEIATKHLIDLGHTHIAHLRVGSGA 130 (280)
T ss_dssp ---CCCEEEESCCCSSSCSTTEEEECHHHHHHHHHHHHHHTTCCSEEEECCSSHH
T ss_pred --cCCCEEEECCCCCCCCCCCEEEechHHHHHHHHHHHHHCCCCeEEEEeCCCch
Confidence 222222211111 1233445667777777777778888887665
No 111
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=32.57 E-value=2.3e+02 Score=26.72 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHc-CCCEEEEecCchhHHHHHHHHHHHhcCCC---CccEEEe
Q 042388 170 EQFKQAEETAKKL-DLDGLVVIGGDDSNTNACLLAENFRSKDM---KTRVIGC 218 (567)
Q Consensus 170 e~~~~~~~~l~~~-~id~LViIGGddS~t~A~~Lae~~~~~g~---~i~VIgV 218 (567)
+.++.+.+.+.++ ++++++|+..+|.+... ..+.+++.|. ++.|+|.
T Consensus 181 ~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g--~~~al~~~g~~v~di~vvG~ 231 (306)
T 8abp_A 181 GAFDAANSMLVQHPEVKHWLIVGMNDSTVLG--GVRATEGQGFKAADIIGIGI 231 (306)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEECSSHHHHHH--HHHHHHHTTCCGGGEEEEEE
T ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcHHHHH--HHHHHHHcCCCCCceEEEEe
Confidence 4455555556554 69998888888876543 3345666676 4667764
No 112
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=31.86 E-value=3.2e+02 Score=25.48 Aligned_cols=89 Identities=9% Similarity=0.007 Sum_probs=53.8
Q ss_pred CcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCC
Q 042388 89 SLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIET 168 (567)
Q Consensus 89 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~ 168 (567)
+.+|||++..-..|-...++.|+-++++.. +.++. +.+..+ +
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~------------------------~~~~~~------------~ 43 (290)
T 2fn9_A 2 KGKMAIVISTLNNPWFVVLAETAKQRAEQL--GYEAT------------------------IFDSQN------------D 43 (290)
T ss_dssp -CEEEEEESCSSSHHHHHHHHHHHHHHHHT--TCEEE------------------------EEECTT------------C
T ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEE------------------------EeCCCC------------C
Confidence 368999998877888888999998887642 21110 011111 2
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEec
Q 042388 169 PEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCP 219 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVP 219 (567)
++...+.++.+...++|++|+.+.+.+... ..+ +.+.+.+ ++||.+-
T Consensus 44 ~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~-~~~-~~~~~~~--iPvV~~~ 90 (290)
T 2fn9_A 44 TAKESAHFDAIIAAGYDAIIFNPTDADGSI-ANV-KRAKEAG--IPVFCVD 90 (290)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCSCTTTTH-HHH-HHHHHTT--CCEEEES
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCChHHHH-HHH-HHHHHCC--CeEEEEe
Confidence 344456677778899999999987654211 112 2333334 5677653
No 113
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.45 E-value=86 Score=31.11 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHcCCC-----EEEEecCc--hhHHHHHHHHHHHhcCCCCccEEEecc
Q 042388 170 EQFKQAEETAKKLDLD-----GLVVIGGD--DSNTNACLLAENFRSKDMKTRVIGCPK 220 (567)
Q Consensus 170 e~~~~~~~~l~~~~id-----~LViIGGd--dS~t~A~~Lae~~~~~g~~i~VIgVPK 220 (567)
..++.+...+++..-. -++++||+ ++-.....|++.++++|+.+.|||+=.
T Consensus 89 ~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~~~~~l~~lak~lkk~gI~v~vIgFG~ 146 (268)
T 4b4t_W 89 TALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGE 146 (268)
T ss_dssp HHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHHTEEEEEEEESS
T ss_pred HHHHHHHHHHHhcccCCCceEEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEEeCC
Confidence 4578888888754332 36666775 345667888898999999999998763
No 114
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=30.83 E-value=1.2e+02 Score=28.81 Aligned_cols=95 Identities=14% Similarity=0.165 Sum_probs=48.9
Q ss_pred CCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeC---CcccccCCCEEEcCccccccccccCCcccccccCC
Q 042388 88 KSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKG---GPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRD 164 (567)
Q Consensus 88 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~---G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~ 164 (567)
.++||+|+.||.. +| ...++++++...-..+|.++.- ...|+ + +...=|-...--.+.
T Consensus 6 ~~~ri~vl~SG~g----sn-l~all~~~~~~~l~~~I~~Visn~~~a~~l-------------~-~A~~~gIp~~~~~~~ 66 (209)
T 4ds3_A 6 KRNRVVIFISGGG----SN-MEALIRAAQAPGFPAEIVAVFSDKAEAGGL-------------A-KAEAAGIATQVFKRK 66 (209)
T ss_dssp CCEEEEEEESSCC----HH-HHHHHHHHTSTTCSEEEEEEEESCTTCTHH-------------H-HHHHTTCCEEECCGG
T ss_pred CCccEEEEEECCc----HH-HHHHHHHHHcCCCCcEEEEEEECCcccHHH-------------H-HHHHcCCCEEEeCcc
Confidence 3579999999982 22 4455565433222346666652 11121 1 111112222221222
Q ss_pred CCCChHHH-HHHHHHHHHcCCCEEEEecCchhHHHHHHH
Q 042388 165 KIETPEQF-KQAEETAKKLDLDGLVVIGGDDSNTNACLL 202 (567)
Q Consensus 165 k~~~~e~~-~~~~~~l~~~~id~LViIGGddS~t~A~~L 202 (567)
.+.+.+.+ +++++.+++++.|.+|+.| .+-.-....|
T Consensus 67 ~~~~r~~~d~~~~~~l~~~~~Dliv~ag-y~~il~~~~l 104 (209)
T 4ds3_A 67 DFASKEAHEDAILAALDVLKPDIICLAG-YMRLLSGRFI 104 (209)
T ss_dssp GSSSHHHHHHHHHHHHHHHCCSEEEESS-CCSCCCHHHH
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEec-cccCcCHHHH
Confidence 33445555 4678899999999888876 4433333334
No 115
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=30.62 E-value=2.5e+02 Score=27.66 Aligned_cols=142 Identities=10% Similarity=-0.012 Sum_probs=0.0
Q ss_pred CCCcEEEEEec--CCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCC
Q 042388 87 NKSLKIGVVLS--GGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRD 164 (567)
Q Consensus 87 ~~~~~IgIv~s--GG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~ 164 (567)
.++.+||+++. |..++=+..+..|+-.++...|. .|=+.+.-++|. +..+++
T Consensus 5 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~-----------~ggi~G~~i~l~------~~D~~~--------- 58 (392)
T 3lkb_A 5 QQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANE-----------RKLVPGVVFNCV------VRDDQY--------- 58 (392)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHH-----------HTSSTTEEEEEE------EEECTT---------
T ss_pred CCceEEEEEecccCchhhcChhHHHHHHHHHHHHHh-----------cCCcCCeEeEEE------EecCCC---------
Q ss_pred CCCChHHHHHHHHHHHHc-CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHHH
Q 042388 165 KIETPEQFKQAEETAKKL-DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKI 243 (567)
Q Consensus 165 k~~~~e~~~~~~~~l~~~-~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k~ 243 (567)
+++.-.++++.|... +++++|..+-..+...+..+.+. ++++|. |-+-+..+.....+..|-+...-..
T Consensus 59 ---~~~~~~~~~~~li~~~~V~~iig~~s~~~~~~~~~~~~~------~iP~i~-~~~~~~~~~~~~~~~~f~~~~~~~~ 128 (392)
T 3lkb_A 59 ---NNANTQRFFEEAVDRFKIPVFLSYATGANLQLKPLIQEL------RIPTIP-ASMHIELIDPPNNDYIFLPTTSYSE 128 (392)
T ss_dssp ---CHHHHHHHHHHHHHTTCCSCEEECCHHHHHHHHHHHHHH------TCCEEE-SCCCGGGGSSSSCTTBCEEECCHHH
T ss_pred ---CHHHHHHHHHHHHhhcCcEEEEeCCcHHHHHHHHHHHhC------CceEEe-cccChhhccCCCCCceEecCCChHH
Q ss_pred HHHHHHHHHHHHhhcCCeeEEE
Q 042388 244 FSEMIGNVMTDARSTGKYYHFV 265 (567)
Q Consensus 244 ~ae~I~ni~~da~S~~k~~~fV 265 (567)
.+..+-....+-..++| +.+|
T Consensus 129 ~~~~~~~~l~~~~g~~~-iaii 149 (392)
T 3lkb_A 129 QVVALLEYIAREKKGAK-VALV 149 (392)
T ss_dssp HHHHHHHHHHHHCTTCE-EEEE
T ss_pred HHHHHHHHHHHhCCCCE-EEEE
No 116
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=30.37 E-value=3.1e+02 Score=26.43 Aligned_cols=33 Identities=21% Similarity=0.150 Sum_probs=25.0
Q ss_pred CCcEEEEEec--CCCCchhhHHHHHHHHHHHHhcC
Q 042388 88 KSLKIGVVLS--GGQAPGGHNVISGIFDYLQERTN 120 (567)
Q Consensus 88 ~~~~IgIv~s--GG~aPG~nnvI~gl~~~l~~~~~ 120 (567)
++.+||+++. |..+|-+..+..|+-.++...+.
T Consensus 3 ~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~ 37 (358)
T 3hut_A 3 LALLLGYELPLTGANAAYGRVFQEAARLQLDRFNA 37 (358)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHh
Confidence 5689999986 55567778888888877766653
No 117
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=29.46 E-value=1.3e+02 Score=30.95 Aligned_cols=115 Identities=12% Similarity=0.101 Sum_probs=62.5
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcC-CCEEEEEeCCcccccCCCEEEcCccccccccccCCcc--cccccCCCC
Q 042388 90 LKIGVVLSGGQAPGGHNVISGIFDYLQERTN-GSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFD--MICSGRDKI 166 (567)
Q Consensus 90 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~-~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~--~LGS~R~k~ 166 (567)
+||.+|+ |-.|+.-.. +.+++++++. + +.+++-+..|-. + ++..+.++.+.-+.-.+ +.+.+-...
T Consensus 28 ~kI~~v~--Gtr~~~~~~-a~li~~l~~~-~~~~~~~~~~tG~h------~-~m~~~~~~~~~i~~~~~l~v~~~~~~~~ 96 (403)
T 3ot5_A 28 IKVMSIF--GTRPEAIKM-APLVLALEKE-PETFESTVVITAQH------R-EMLDQVLEIFDIKPDIDLDIMKKGQTLA 96 (403)
T ss_dssp EEEEEEE--CSHHHHHHH-HHHHHHHHTC-TTTEEEEEEECC------------CHHHHHHTTCCCSEECCCCC-CCCHH
T ss_pred ceEEEEE--ecChhHHHH-HHHHHHHHhC-CCCCcEEEEEecCc------H-HHHHHHHHhcCCCCCcccccCCCCCCHH
Confidence 4777776 778887666 7788888753 4 677776666643 0 12222222221111110 001110000
Q ss_pred -CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecc
Q 042388 167 -ETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPK 220 (567)
Q Consensus 167 -~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPK 220 (567)
.+-.-+.++.+.+++.+-|.++++|+-.+.-.++..+.+ . +|+|+++-.
T Consensus 97 ~~~~~~~~~l~~~l~~~kPD~Vi~~gd~~~~l~~~laA~~---~--~IPv~h~~a 146 (403)
T 3ot5_A 97 EITSRVMNGINEVIAAENPDIVLVHGDTTTSFAAGLATFY---Q--QKMLGHVEA 146 (403)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHH---T--TCEEEEESC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEECCchhHHHHHHHHHH---h--CCCEEEEEC
Confidence 022346777888999999999999986655444444432 2 567887653
No 118
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=29.40 E-value=3.8e+02 Score=25.53 Aligned_cols=106 Identities=16% Similarity=0.099 Sum_probs=65.2
Q ss_pred CCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCC
Q 042388 88 KSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIE 167 (567)
Q Consensus 88 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~ 167 (567)
+.++|||++..-.-|=...++.|+-++++.. |.++.-+ +..+
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~------------------------~~~~------------ 43 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQEA--GYKTDLQ------------------------YADD------------ 43 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHHT--TCEEEEE------------------------ECTT------------
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHHc--CCEEEEe------------------------eCCC------------
Confidence 3579999999988899999999999887652 2222100 0111
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCC-CCCCCCCChHh
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKC-KEVPTSFGFDT 239 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~-~~ie~S~GFdT 239 (567)
+.+...+.++.+...++||+|+.+-+..... . ..+.+.+.| ++||.+ |++..+ ..+..++|+|-
T Consensus 44 ~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~-~-~~~~~~~~g--iPvV~~----~~~~~~~~~~~~~V~~D~ 108 (330)
T 3uug_A 44 DIPNQLSQIENMVTKGVKVLVIASIDGTTLS-D-VLKQAGEQG--IKVIAY----DRLIRNSGDVSYYATFDN 108 (330)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEECCSSGGGGH-H-HHHHHHHTT--CEEEEE----SSCCCSCTTCCEEEEECH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcCCchhHH-H-HHHHHHHCC--CCEEEE----CCCCCCCCceeEEEEeCH
Confidence 3344566778888899999999988753211 1 122333334 678765 555543 23334666653
No 119
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=29.20 E-value=63 Score=29.80 Aligned_cols=93 Identities=17% Similarity=0.195 Sum_probs=54.4
Q ss_pred CCCCC--hHHHHHHHHHHHHc-C----CCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCC
Q 042388 164 DKIET--PEQFKQAEETAKKL-D----LDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFG 236 (567)
Q Consensus 164 ~k~~~--~e~~~~~~~~l~~~-~----id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~G 236 (567)
+++.+ .+++....+++... . =|-++|=||-|=...|...-+ +.|..++|||+-|- ...+..+.-+..+-
T Consensus 53 f~I~~~g~DDya~M~Evl~RR~~r~~~PDLilIDGGkgQl~aA~~vl~---elg~~i~v~glAK~-~e~l~~~~~~i~L~ 128 (159)
T 2nrr_A 53 YKIEQDHPDDYESIRTVVKRRYSKHPLPNLLFVDGGIGQVNAAIEALK---EIGKDCPVVGLAKK-EETVVFENREIHLP 128 (159)
T ss_dssp EEC-----CHHHHHHHHHHHHHTTSCCCSEEEESSCHHHHHHHHHHHH---HTTCCCCEEEEC-----CEEETTEEECCC
T ss_pred eecCCCCCCHHHHHHHHHHHHhccCCCCCEEEEeCCHHHHHHHHHHHH---HcCCCccEEEEEcC-CcEEEeCCCeeecC
Confidence 45554 36888888888664 2 467777799998888776554 35778999999993 01111110011222
Q ss_pred hH-hHHHHHHHHHHHHHHHHhhcCC
Q 042388 237 FD-TACKIFSEMIGNVMTDARSTGK 260 (567)
Q Consensus 237 Fd-TA~k~~ae~I~ni~~da~S~~k 260 (567)
=+ -+...+..+=++.++=|.+.+|
T Consensus 129 ~~s~~l~llqriRDEaHRFAIt~HR 153 (159)
T 2nrr_A 129 HDHPVLRLLVQIRDETHRFAVSYHR 153 (159)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2567777777777777777554
No 120
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=29.03 E-value=52 Score=30.80 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=32.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEeccc
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT 221 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT 221 (567)
+++.+.+.+++.++.+++.+|.+.|-. ..-.-.++- ....+|||||-.
T Consensus 47 ~p~~~~~~~~~a~~~g~~ViIa~AG~a-a~LpgvvA~-----~t~~PVIgVP~~ 94 (174)
T 3lp6_A 47 TPEAMFSYARGAAARGLEVIIAGAGGA-AHLPGMVAA-----ATPLPVIGVPVP 94 (174)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEEEESS-CCHHHHHHH-----HCSSCEEEEEEC
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCch-hhhHHHHHh-----ccCCCEEEeeCC
Confidence 678889999999999999666554432 222223332 246799999964
No 121
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=28.43 E-value=56 Score=33.02 Aligned_cols=104 Identities=16% Similarity=0.204 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCccccc--ccCCCCCChHHHHHHHHHHHHcCCC
Q 042388 108 ISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMIC--SGRDKIETPEQFKQAEETAKKLDLD 185 (567)
Q Consensus 108 I~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LG--S~R~k~~~~e~~~~~~~~l~~~~id 185 (567)
++..++.++...+ ..+-+-.|..|...... .+....+.+.=|...+- |||. .+.++++..+..+..++|+
T Consensus 41 l~~~~~~l~~l~p--~fvsVT~gagg~~r~~t----~~~a~~i~~~~g~~~v~Hltc~~--~~~~~l~~~L~~~~~~GI~ 112 (304)
T 3fst_A 41 LWNSIDRLSSLKP--KFVSVTYGANSGERDRT----HSIIKGIKDRTGLEAAPHLTCID--ATPDELRTIARDYWNNGIR 112 (304)
T ss_dssp HHHHHHHHHTTCC--SEEEECCCTTSSCHHHH----HHHHHHHHHHHCCCEEEEEESTT--SCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCC--CEEEEeeCCCCcchhHH----HHHHHHHHHHhCCCeeEEeecCC--CCHHHHHHHHHHHHHCCCC
Confidence 4445566655544 33667777777543322 22233344322322222 5666 3788999999999999999
Q ss_pred EEEEecCch------hHHHHHHHHHHHhcC-CCCccEEEec
Q 042388 186 GLVVIGGDD------SNTNACLLAENFRSK-DMKTRVIGCP 219 (567)
Q Consensus 186 ~LViIGGdd------S~t~A~~Lae~~~~~-g~~i~VIgVP 219 (567)
.++++.||- ....|..|-+++++. ++.+.|.+-|
T Consensus 113 nILaLrGDpp~~~~~~~~~A~dLv~~ir~~~~f~IgvA~yP 153 (304)
T 3fst_A 113 HIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYP 153 (304)
T ss_dssp EEEEECCCCC------CCCHHHHHHHHHHHCCCEEEEEECT
T ss_pred EEEEecCCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Confidence 999999984 344477777777653 4555566656
No 122
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=28.27 E-value=75 Score=32.00 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=32.1
Q ss_pred HHHhhcCCeeEEEEecCC-CCcHHHHHhhhhcCCcEEEEC
Q 042388 253 TDARSTGKYYHFVRLMGR-AASHITLECALQTHPNITIIG 291 (567)
Q Consensus 253 ~da~S~~k~~~fVevMGR-~ag~LAL~~aLat~pnivlIp 291 (567)
...+..++.+.||=+||- +.||++|--+-...+|.++++
T Consensus 18 ~~~r~~g~~IgfVPTMG~LH~GHlsLv~~Ar~~~d~vVVS 57 (287)
T 3q12_A 18 RRWRQEGKRIALVPTMGNLHEGHMTLVDEAKTRADVVVVT 57 (287)
T ss_dssp HHHHHTTCCEEEEEECSSCCHHHHHHHHHHHTTSSEEEEE
T ss_pred HHHHHcCCeEEEEcCCCcccHHHHHHHHHHHHhCCEEEEE
Confidence 344556677999999996 899999988888889988875
No 123
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=28.03 E-value=83 Score=30.74 Aligned_cols=104 Identities=16% Similarity=0.261 Sum_probs=61.4
Q ss_pred CcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccC---------------CCEEEcCcccccccccc
Q 042388 89 SLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMK---------------CKYVELSTEYIYPYRNQ 153 (567)
Q Consensus 89 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~---------------~~~~eLt~~~v~~~~n~ 153 (567)
..+-++|+++|+-|- .+.-+.+ . ..-++++=+|..=|++ +++--++++..+.|...
T Consensus 20 ~~~~~lIv~ng~~~~---~~~~~~~----~--~~~~i~aDgGa~~l~~~~~~~~~~~~Pd~ivGD~DSi~~~~~~~~~~~ 90 (247)
T 3s4y_A 20 NLKYCLVILNQPLDN---YFRHLWN----K--ALLRACADGGANRLYDITEGERESFLPEFINGDFDSIRPEVREYYATK 90 (247)
T ss_dssp CCCEEEEECSSCCCT---THHHHHH----H--CSCEEEETTHHHHHHHHTTTCGGGCCCSEEEECCSSSCHHHHHHHHHT
T ss_pred CCCEEEEEECCcchH---HHHHHHh----h--CCEEEEEchHHHHHHHhccccccCCCccEEEcCCcCCCHHHHHHHHhc
Confidence 346677777888873 3332222 1 3456777777554444 12223444455566666
Q ss_pred CCcccccccCCCCCChHHHHHHHHHHHHc------CCCEEEEecCchh-----HHHHHHHHHH
Q 042388 154 GGFDMICSGRDKIETPEQFKQAEETAKKL------DLDGLVVIGGDDS-----NTNACLLAEN 205 (567)
Q Consensus 154 GG~~~LGS~R~k~~~~e~~~~~~~~l~~~------~id~LViIGGddS-----~t~A~~Lae~ 205 (567)
| ..++-. .. .+..|+++|++.+.+. +.+-++++|+-|. +.+...|..+
T Consensus 91 ~-~~i~~~-pe--KD~TD~ekAl~~~~~~~~~~~~~~~~I~ilGa~GGR~DH~Lani~lL~~~ 149 (247)
T 3s4y_A 91 G-CELIST-PD--QDHTDFTKCLKMLQKKIEEKDLKVDVIVTLGGLAGRFDQIMASVNTLFQA 149 (247)
T ss_dssp T-CEEEEC-CC--TTSCHHHHHHHHHHHHHHHTTCCCSEEEEECCSSSSHHHHHHHHHHHHHG
T ss_pred C-CEEEEC-CC--CCcCHHHHHHHHHHHhhhhccCCCCEEEEEecCCCchhHHHHHHHHHHHH
Confidence 5 335432 12 3455788998887664 7899999999764 4555556554
No 124
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=27.99 E-value=1.8e+02 Score=28.14 Aligned_cols=91 Identities=8% Similarity=-0.053 Sum_probs=54.3
Q ss_pred CcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCC
Q 042388 89 SLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIET 168 (567)
Q Consensus 89 ~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~ 168 (567)
.++|||++..-..|=...++.|+-++++.. +.++ + +. .+..+ +
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~g~~~~~~~~--g~~~---------------~-~~-------~~~~~------------d 45 (316)
T 1tjy_A 3 AERIAFIPKLVGVGFFTSGGNGAQEAGKAL--GIDV---------------T-YD-------GPTEP------------S 45 (316)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHHHHH--TCEE---------------E-EC-------CCSSC------------C
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHh--CCEE---------------E-EE-------CCCCC------------C
Confidence 368999998777788888888888876643 1111 0 00 00111 2
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecc
Q 042388 169 PEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPK 220 (567)
Q Consensus 169 ~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPK 220 (567)
.+.....++.+...++|+||+.+-+.+... ..+ +.+.+. +++||.+-.
T Consensus 46 ~~~q~~~i~~li~~~vdgiii~~~~~~~~~-~~~-~~a~~~--gipvV~~d~ 93 (316)
T 1tjy_A 46 VSGQVQLVNNFVNQGYDAIIVSAVSPDGLC-PAL-KRAMQR--GVKILTWDS 93 (316)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCSSSSTTH-HHH-HHHHHT--TCEEEEESS
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCHHHHH-HHH-HHHHHC--cCEEEEecC
Confidence 344456677888899999999887654211 122 223333 467887633
No 125
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=27.14 E-value=43 Score=33.84 Aligned_cols=102 Identities=12% Similarity=0.179 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCccccc--ccCCCCCChHHHHHHHHHHHHcCCCE
Q 042388 109 SGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMIC--SGRDKIETPEQFKQAEETAKKLDLDG 186 (567)
Q Consensus 109 ~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LG--S~R~k~~~~e~~~~~~~~l~~~~id~ 186 (567)
+..++.++...+ .-+-+-+|..|-.... |.+....++.. |...+- |||. .+.+.++..+..+..++|+.
T Consensus 32 ~~~~~~L~~~~p--d~vsVT~~~~g~~r~~----t~~~a~~i~~~-g~~~i~Hltc~~--~~~~~l~~~L~~~~~~GI~n 102 (310)
T 3apt_A 32 FRTLEELKAFRP--AFVSITYGAMGSTRER----SVAWAQRIQSL-GLNPLAHLTVAG--QSRKEVAEVLHRFVESGVEN 102 (310)
T ss_dssp HHHHHHHGGGCC--SEEEECCCSTTCSHHH----HHHHHHHHHHT-TCCBCEEEECTT--SCHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHhcCCC--CEEEEecCCCCCcchh----HHHHHHHHHHh-CCCeEEEeecCC--CCHHHHHHHHHHHHHCCCCE
Confidence 344455554333 3355667766643222 22223333323 333322 5666 47889999999999999999
Q ss_pred EEEecCchh------------HHHHHHHHHHHhcC-C--CCccEEEec
Q 042388 187 LVVIGGDDS------------NTNACLLAENFRSK-D--MKTRVIGCP 219 (567)
Q Consensus 187 LViIGGddS------------~t~A~~Lae~~~~~-g--~~i~VIgVP 219 (567)
++++.||-. ...|..|-+++++. | +.+-|.+-|
T Consensus 103 iLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~~g~~f~igvA~yP 150 (310)
T 3apt_A 103 LLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYP 150 (310)
T ss_dssp EEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEEEECT
T ss_pred EEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 999999932 34677887777665 4 444455545
No 126
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=26.79 E-value=4.4e+02 Score=25.44 Aligned_cols=42 Identities=12% Similarity=0.018 Sum_probs=28.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCC
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKD 210 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g 210 (567)
+++..+.+++.++++++|+++. +-+.....++.+++.+.+.|
T Consensus 57 ~~~~~~~l~~~~~~~~~d~vi~-~~~~~~~~~a~~~~~l~~~g 98 (331)
T 2pn1_A 57 EVEYIDHLLTLCQDEGVTALLT-LIDPELGLLAQATERFQAIG 98 (331)
T ss_dssp STTHHHHHHHHHHHHTCCEEEE-SSHHHHHHHHHTHHHHHTTT
T ss_pred ChhHHHHHHHHHHHcCCCEEEe-CCchhHHHHHHHHHHHHhCC
Confidence 3445788899999999998765 44444445555677776555
No 127
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima}
Probab=26.70 E-value=1.5e+02 Score=29.20 Aligned_cols=76 Identities=17% Similarity=0.292 Sum_probs=52.0
Q ss_pred EEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChHHHH
Q 042388 94 VVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPEQFK 173 (567)
Q Consensus 94 Iv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e~~~ 173 (567)
||++|=-=||+-|++.-+.+ ... .+|+++++|+- +.+. +++.++
T Consensus 175 vvitGCsH~GI~Niv~~a~~----~~g-~~i~~viGGfH-------------------------L~~~------~~~~l~ 218 (267)
T 3h3e_A 175 VVITGCSHRGIDNILLDIAE----TFN-ERIKMVVGGFH-------------------------LLKS------SDDEIE 218 (267)
T ss_dssp EEEESCCTTCHHHHHHHHHT----TCS-SCEEEEEEECC-------------------------CTTS------CHHHHH
T ss_pred EEEeCCCCcCHHHHHHHHHH----HhC-CCceEEEeccc-------------------------cCCC------CHHHHH
Confidence 56667777899998876653 333 78999986553 3221 568899
Q ss_pred HHHHHHHHcCCCEEEEecCchhHHHHHHHHHHH
Q 042388 174 QAEETAKKLDLDGLVVIGGDDSNTNACLLAENF 206 (567)
Q Consensus 174 ~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~ 206 (567)
++++.+++++++-++..==.|.. ..+.|++.+
T Consensus 219 ~tl~~l~~~~~~~i~~~HCTg~~-a~~~L~~~l 250 (267)
T 3h3e_A 219 KIVKAFNELGVETVVPCHCTGER-AVDIFKREF 250 (267)
T ss_dssp HHHHHHHHTTCCEEEEETTSCHH-HHHHHHHHC
T ss_pred HHHHHHHhcCCCEEEEECCCCHH-HHHHHHHHC
Confidence 99999999999977765433333 445566554
No 128
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=26.65 E-value=4.2e+02 Score=25.12 Aligned_cols=50 Identities=12% Similarity=0.093 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecCch---------hHHHHHHHHHHHhcCCCCccEEEecc
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDD---------SNTNACLLAENFRSKDMKTRVIGCPK 220 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGdd---------S~t~A~~Lae~~~~~g~~i~VIgVPK 220 (567)
.++..++.+++++++++=+..... +...+..+.+.+++.|+.+..++.|.
T Consensus 31 ~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~ 89 (295)
T 3cqj_A 31 CWLERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLALVNAIVETGVRVPSMCLSA 89 (295)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHHHHHHHHHHHHHCCEEEEEEEGG
T ss_pred CHHHHHHHHHhcCCCEEEEecCCcccccCcccCCHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 478889999999999998876542 34556778888888898877777664
No 129
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=26.54 E-value=3.9e+02 Score=24.74 Aligned_cols=50 Identities=18% Similarity=0.132 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcCCCEEEEe-cCch----hHHHHHHHHHHHhcCCCCccEEEecc
Q 042388 171 QFKQAEETAKKLDLDGLVVI-GGDD----SNTNACLLAENFRSKDMKTRVIGCPK 220 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViI-GGdd----S~t~A~~Lae~~~~~g~~i~VIgVPK 220 (567)
.++..++.+++++++++=+. ...- +-..+..+.+.+.+.|+.+..++.|-
T Consensus 15 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 69 (278)
T 1i60_A 15 NLKLDLELCEKHGYDYIEIRTMDKLPEYLKDHSLDDLAEYFQTHHIKPLALNALV 69 (278)
T ss_dssp CHHHHHHHHHHTTCSEEEEETTTHHHHHTTSSCHHHHHHHHHTSSCEEEEEEEEE
T ss_pred CHHHHHHHHHHhCCCEEEEccHHHHHHHhccCCHHHHHHHHHHcCCCeeeecccc
Confidence 36788899999999999887 5432 11345677888888898877788885
No 130
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=25.78 E-value=1.8e+02 Score=27.67 Aligned_cols=104 Identities=15% Similarity=0.235 Sum_probs=62.3
Q ss_pred CCCcEEEEEecC-----CCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccc
Q 042388 87 NKSLKIGVVLSG-----GQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICS 161 (567)
Q Consensus 87 ~~~~~IgIv~sG-----G~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS 161 (567)
.+..+|||++.. -.-|=...++.|+-+.++.. |.++.- .+...
T Consensus 20 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~------------------------~~~~~------ 67 (305)
T 3huu_A 20 NKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVR--GYSTRM------------------------TVSEN------ 67 (305)
T ss_dssp -CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHH--TCEEEE------------------------CCCSS------
T ss_pred CCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHC--CCEEEE------------------------EeCCC------
Confidence 445799999988 56777788888888887643 222210 00111
Q ss_pred cCCCCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 162 GRDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 162 ~R~k~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
+.+...+.++.+...++||+|+.+.+.+.... +.+.+.+ ++||.+ |++.....+ .+++.|-
T Consensus 68 ------~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~----~~l~~~~--iPvV~i----~~~~~~~~~-~~V~~D~ 128 (305)
T 3huu_A 68 ------SGDLYHEVKTMIQSKSVDGFILLYSLKDDPIE----HLLNEFK--VPYLIV----GKSLNYENI-IHIDNDN 128 (305)
T ss_dssp ------HHHHHHHHHHHHHTTCCSEEEESSCBTTCHHH----HHHHHTT--CCEEEE----SCCCSSTTC-CEEECCH
T ss_pred ------ChHHHHHHHHHHHhCCCCEEEEeCCcCCcHHH----HHHHHcC--CCEEEE----CCCCcccCC-cEEEeCH
Confidence 23445677888999999999999887653222 3333444 567754 444422112 3565553
No 131
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=25.50 E-value=4e+02 Score=27.29 Aligned_cols=104 Identities=19% Similarity=0.207 Sum_probs=61.2
Q ss_pred HcCCCEEEEecCch---hHHHHHHHHHHHhcCCCCccEEEecccCc---CCCCCCCCCCCCChHhHHHHHHHHHHHHHHH
Q 042388 181 KLDLDGLVVIGGDD---SNTNACLLAENFRSKDMKTRVIGCPKTID---GDLKCKEVPTSFGFDTACKIFSEMIGNVMTD 254 (567)
Q Consensus 181 ~~~id~LViIGGdd---S~t~A~~Lae~~~~~g~~i~VIgVPKTID---NDL~~~~ie~S~GFdTA~k~~ae~I~ni~~d 254 (567)
+.....+++.|=|- -.+.+..|.+.++++|++...++-.-|.- .|..-. + ..+-++-++ ..+..+..+
T Consensus 166 ~i~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg~li~~~~gv~-~-D~~~~~~~a----g~~e~~i~~ 239 (350)
T 2g0t_A 166 RKKIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGADAGYV-I-DAVPADFVS----GVVEKAVLK 239 (350)
T ss_dssp GCCSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHHHHTTCSEECC-G-GGSBGGGHH----HHHHHHHHH
T ss_pred eecceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCceeeeeccCCCCC-C-Cceecchhh----HHHHhhHHH
Confidence 34566788888653 47788889899999999877766554422 222111 0 133334333 333444444
Q ss_pred HhhcCCeeEEEEecCC--CCcHHHHHhhh--hcCCcEEEE
Q 042388 255 ARSTGKYYHFVRLMGR--AASHITLECAL--QTHPNITII 290 (567)
Q Consensus 255 a~S~~k~~~fVevMGR--~ag~LAL~~aL--at~pnivlI 290 (567)
+......|.+||-.|. +..+.....+| ..+|+.+++
T Consensus 240 ~~~~~~D~ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl 279 (350)
T 2g0t_A 240 LEKTGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFL 279 (350)
T ss_dssp HHHTTCSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEE
T ss_pred hhhcCCCEEEEccCeeccccCchHHHHHHHcCCCCCEEEE
Confidence 4333445889999874 34444434433 468999988
No 132
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=25.46 E-value=2e+02 Score=27.21 Aligned_cols=96 Identities=18% Similarity=0.224 Sum_probs=46.4
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCCh
Q 042388 90 LKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETP 169 (567)
Q Consensus 90 ~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~ 169 (567)
+||+|+.||... ....+++++.+..-..++.++.--.. +..+..+...=|-..+--...++.+.
T Consensus 2 ~rI~vl~SG~g~-----~~~~~l~~l~~~~~~~~i~~Vvs~~~-----------~~~~~~~A~~~gIp~~~~~~~~~~~r 65 (216)
T 2ywr_A 2 LKIGVLVSGRGS-----NLQAIIDAIESGKVNASIELVISDNP-----------KAYAIERCKKHNVECKVIQRKEFPSK 65 (216)
T ss_dssp EEEEEEECSCCH-----HHHHHHHHHHTTSSCEEEEEEEESCT-----------TCHHHHHHHHHTCCEEECCGGGSSSH
T ss_pred CEEEEEEeCCcH-----HHHHHHHHHHhCCCCCeEEEEEeCCC-----------ChHHHHHHHHcCCCEEEeCcccccch
Confidence 699999999752 23445555433211226666552111 00111111111222222122233444
Q ss_pred HHH-HHHHHHHHHcCCCEEEEecCchhHHHHHHH
Q 042388 170 EQF-KQAEETAKKLDLDGLVVIGGDDSNTNACLL 202 (567)
Q Consensus 170 e~~-~~~~~~l~~~~id~LViIGGddS~t~A~~L 202 (567)
+.+ +.+++.+++++.|.+|+.| .+-.-....|
T Consensus 66 ~~~~~~~~~~l~~~~~Dliv~a~-y~~il~~~~l 98 (216)
T 2ywr_A 66 KEFEERMALELKKKGVELVVLAG-FMRILSHNFL 98 (216)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESS-CCSCCCHHHH
T ss_pred hhhhHHHHHHHHhcCCCEEEEeC-chhhCCHHHH
Confidence 455 3567889999999777665 4433333333
No 133
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=25.33 E-value=2.2e+02 Score=26.56 Aligned_cols=48 Identities=10% Similarity=0.055 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
.++.+++.+++++++++=+...+-+...+..+.+.+++.|+++..++.
T Consensus 19 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 66 (275)
T 3qc0_A 19 GFAEAVDICLKHGITAIAPWRDQVAAIGLGEAGRIVRANGLKLTGLCR 66 (275)
T ss_dssp CHHHHHHHHHHTTCCEEECBHHHHHHHCHHHHHHHHHHHTCEESCEEE
T ss_pred CHHHHHHHHHHcCCCEEEeccccccccCHHHHHHHHHHcCCceEEeec
Confidence 467889999999999998877543445677788888888988776664
No 134
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB: 3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Probab=24.97 E-value=4.5e+02 Score=26.45 Aligned_cols=49 Identities=12% Similarity=0.172 Sum_probs=34.8
Q ss_pred ChHHHHHHHHHHHHc--CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 168 TPEQFKQAEETAKKL--DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~--~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
+++++.++.+.++++ +=||+||.=|-|||.-.+.+-..+. +.+.+||-.
T Consensus 62 t~~~w~~la~~I~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l--~~~kPVVlT 112 (326)
T 1nns_A 62 NDNVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLDLTV--KCDKPVVMV 112 (326)
T ss_dssp CHHHHHHHHHHHHHHGGGCSEEEEECCSSSHHHHHHHHHHHC--CCCSCEEEE
T ss_pred CHHHHHHHHHHHHHHhhcCCcEEEEcCchhHHHHHHHHHHhc--CCCCCEEEe
Confidence 678888887777764 2399999999999977555545554 344566654
No 135
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A
Probab=24.91 E-value=94 Score=32.11 Aligned_cols=50 Identities=26% Similarity=0.398 Sum_probs=36.8
Q ss_pred ChHHHHHHHHHHHHc--CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEe
Q 042388 168 TPEQFKQAEETAKKL--DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 218 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~--~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgV 218 (567)
+++++.++++.++++ +.||+||.=|-|||.-.+.+-.++.+ +.+.+||-.
T Consensus 84 t~~~w~~la~~I~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~-~~~kPVVlT 135 (358)
T 2him_A 84 TPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASALSFMLE-NLGKPVIVT 135 (358)
T ss_dssp CHHHHHHHHHHHHHHGGGCSEEEEECCSTTHHHHHHHHHHHEE-TCCSCEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCeEEEecCchHHHHHHHHHHHHHh-cCCCCEEEe
Confidence 688888888888776 89999999999999765555455443 334456654
No 136
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Probab=24.54 E-value=3.2e+02 Score=29.42 Aligned_cols=160 Identities=14% Similarity=0.187 Sum_probs=92.0
Q ss_pred EEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCCChHHH
Q 042388 93 GVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPEQF 172 (567)
Q Consensus 93 gIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e~~ 172 (567)
+|...|...-|.--.+..+.+-+........+ .+|. ..+. .+.++ +--.|... |+ ||-++|..+ +.+.+
T Consensus 108 ~i~I~a~~~~G~~~g~qTL~Ql~~~~~~~~~~---~~~~-~~lp--~~~I~--D~Prf~~R-G~-mLD~aR~f~-~~~~i 176 (512)
T 1jak_A 108 GVTITARKAAGLFHGVQTLRQLLPPAVEKDSA---QPGP-WLVA--GGTIE--DTPRYAWR-SA-MLDVSRHFF-GVDEV 176 (512)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHSCGGGGCSSC---CCCC-CEEC--CEEEE--ECCSCSEE-EE-EEECSSSCC-CHHHH
T ss_pred EEEEEEcCHHHHHHHHHHHHHHhhhhhccccc---ccCc-cccc--ceEEe--ecCCCCcc-ce-eeccCCCCC-CHHHH
Confidence 46777777777766666665443211000000 0010 0011 12222 23344444 66 999999755 68899
Q ss_pred HHHHHHHHHcCCCEEEEe------------------------------cCchhHHHHHHHHHHHhcCCCCccEEE-----
Q 042388 173 KQAEETAKKLDLDGLVVI------------------------------GGDDSNTNACLLAENFRSKDMKTRVIG----- 217 (567)
Q Consensus 173 ~~~~~~l~~~~id~LViI------------------------------GGddS~t~A~~Lae~~~~~g~~i~VIg----- 217 (567)
++.++.+..++++.|-.= ||-=|......|.+|.+++|+. ||-
T Consensus 177 k~~id~ma~~KlN~lh~HltDdq~wriei~~~P~Lt~~ga~~~~~~~~~g~YT~~di~eiv~yA~~rgI~--VIPEID~P 254 (512)
T 1jak_A 177 KRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLE--VVPEIDMP 254 (512)
T ss_dssp HHHHHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTTTSCCTTSSCCCCBCHHHHHHHHHHHHHTTCE--EEEECCCS
T ss_pred HHHHHHHHHcCCcEEEEEeccCCCceehhhhhHHHHhhcCccccCCCCCCCCCHHHHHHHHHHHHHcCCE--EEEccCCC
Confidence 999999999999998642 3344677888888999888853 431
Q ss_pred ---------ecccCcCC--------CCCCCCCCCCChHhHHHHHHHHHHHHHHHHhhcCCeeEEE--Ee
Q 042388 218 ---------CPKTIDGD--------LKCKEVPTSFGFDTACKIFSEMIGNVMTDARSTGKYYHFV--RL 267 (567)
Q Consensus 218 ---------VPKTIDND--------L~~~~ie~S~GFdTA~k~~ae~I~ni~~da~S~~k~~~fV--ev 267 (567)
-|.=-... .....-..+++-+.+.+++.++++.+. +.-. .+|+|+= |+
T Consensus 255 GH~~a~l~aypeL~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~Ev~-~lFp-~~~iHiGgDE~ 321 (512)
T 1jak_A 255 GHTNAALASYAELNCDGVAPPLYTGTKVGFSSLCVDKDVTYDFVDDVIGELA-ALTP-GRYLHIGGDEA 321 (512)
T ss_dssp SSCHHHHHHCGGGSTTSCCCCCCCSCCCSCCCCCTTCHHHHHHHHHHHHHHH-HTCC-SSEEECCCCCC
T ss_pred chHHHHHHhCHHhcCcCCCCccccccCcCCcccCCCCHHHHHHHHHHHHHHH-HhCC-CCeEEECCccc
Confidence 12111000 000000136777889999999999886 3333 3677765 66
No 137
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=24.44 E-value=95 Score=31.24 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=36.5
Q ss_pred HHHhhcCCeeEEEEecCC-CCcHHHHHhhhhcCCcEEEEC-----------CcchhhhcchHhH
Q 042388 253 TDARSTGKYYHFVRLMGR-AASHITLECALQTHPNITIIG-----------EEVAAKKQTLKNV 304 (567)
Q Consensus 253 ~da~S~~k~~~fVevMGR-~ag~LAL~~aLat~pnivlIp-----------Ee~~~~~~tL~~i 304 (567)
...+...+.+.||=+||- |.||++|--.-.. +|.++++ |+...-..||+.=
T Consensus 18 ~~~~~~g~~Ig~VPTMGaLH~GHlsLv~~Ar~-~d~VVVSIFVNP~QF~~~EDl~~YPRtle~D 80 (285)
T 3mxt_A 18 KDWKSHQLSIGYVPTMGFLHDGHLSLVKHAKT-QDKVIVSIFVNPMQFGPNEDFSSYPRDLERD 80 (285)
T ss_dssp HHHHHTTCCEEEEEECSSCCHHHHHHHHHHTT-SSEEEEEECCCGGGCCTTSCTTTSCCCHHHH
T ss_pred HHHHHcCCeEEEEcCCCcccHHHHHHHHHHHh-CCEEEEEeccCccccCCchhhhcCCCCHHHH
Confidence 344556677999999996 8999999877666 8888764 5544444566543
No 138
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=24.24 E-value=47 Score=31.69 Aligned_cols=103 Identities=9% Similarity=0.007 Sum_probs=58.3
Q ss_pred CCcEEEEEecC-C---CCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccC
Q 042388 88 KSLKIGVVLSG-G---QAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGR 163 (567)
Q Consensus 88 ~~~~IgIv~sG-G---~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R 163 (567)
+..+|||++.. - ..|-...++.|+-++++.. +.++. +. +..+
T Consensus 3 ~s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~----------------~~--------~~~~-------- 48 (287)
T 3bbl_A 3 LSFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAV--NYFVL----------------PF--------PFSE-------- 48 (287)
T ss_dssp CCCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHT--TCEEE----------------EC--------CCCS--------
T ss_pred ceeEEEEEecccccccCChhHHHHHHHHHHHHHHc--CCEEE----------------EE--------eCCC--------
Confidence 34689999876 4 6788889999998887642 22211 00 0111
Q ss_pred CCCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 164 DKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 164 ~k~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
. .+...+.++.+...++||+|+.+.+.+... + +.+.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 49 -~---~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~-~~l~~~~--iPvV~~----~~~~~~~~~-~~V~~D~ 109 (287)
T 3bbl_A 49 -D---RSQIDIYRDLIRSGNVDGFVLSSINYNDPR---V-QFLLKQK--FPFVAF----GRSNPDWDF-AWVDIDG 109 (287)
T ss_dssp -S---TTCCHHHHHHHHTTCCSEEEECSCCTTCHH---H-HHHHHTT--CCEEEE----SCCSTTCCC-CEEEECH
T ss_pred -c---hHHHHHHHHHHHcCCCCEEEEeecCCCcHH---H-HHHHhcC--CCEEEE----CCcCCCCCC-CEEEecc
Confidence 0 011234566778899999999987654222 2 3333334 567765 333332222 3666653
No 139
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}
Probab=23.97 E-value=4e+02 Score=28.54 Aligned_cols=37 Identities=16% Similarity=0.313 Sum_probs=26.2
Q ss_pred cEEEEEecCCCCchhh-HHHHHHHHHH-HHhcCCCEEEEEe
Q 042388 90 LKIGVVLSGGQAPGGH-NVISGIFDYL-QERTNGSKLYGFK 128 (567)
Q Consensus 90 ~~IgIv~sGG~aPG~n-nvI~gl~~~l-~~~~~~~~v~Gf~ 128 (567)
..+.||+.||+ |+- ++++|.+..- +.+..+.+++|+.
T Consensus 174 ~G~~LVtGGG~--GlMEaa~aGA~~a~s~qr~~GG~vIGIi 212 (460)
T 3bq9_A 174 RGLNICTGCGP--GAMKGPMKGATIGHAKQRVEGGRYLGLT 212 (460)
T ss_dssp TTCEEEECCSS--GGGTHHHHHHHHHHHHTTCSSCCEEEEE
T ss_pred CCCEEEeCCcH--HHhhHHHhhHHhhcccccCCCCEEEEEe
Confidence 46888998885 777 8888877541 1223577888887
No 140
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=23.92 E-value=57 Score=30.39 Aligned_cols=48 Identities=23% Similarity=0.230 Sum_probs=32.0
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEeccc
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT 221 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT 221 (567)
+++.+.+.++..++.+++.+|.+.|-. ..-.-.++- ....+|||||-.
T Consensus 46 ~p~~~~~~~~~a~~~g~~ViIa~AG~a-a~LpgvvA~-----~t~~PVIgVP~~ 93 (169)
T 3trh_A 46 TPKETVEFVENADNRGCAVFIAAAGLA-AHLAGTIAA-----HTLKPVIGVPMA 93 (169)
T ss_dssp SHHHHHHHHHHHHHTTEEEEEEEECSS-CCHHHHHHH-----TCSSCEEEEECC
T ss_pred CHHHHHHHHHHHHhCCCcEEEEECChh-hhhHHHHHh-----cCCCCEEEeecC
Confidence 678888899999999999666554432 222223332 346899999964
No 141
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=23.75 E-value=47 Score=33.11 Aligned_cols=56 Identities=9% Similarity=0.146 Sum_probs=33.3
Q ss_pred HHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHh
Q 042388 173 KQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDT 239 (567)
Q Consensus 173 ~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdT 239 (567)
.+.++.+...++||+|+++-..+......|. +.+ ++||.+ |.+.....+ .++++|-
T Consensus 118 ~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~----~~~--iPvV~i----~~~~~~~~~-~~V~~D~ 173 (366)
T 3h5t_A 118 VSAQQLVNNAAVDGVVIYSVAKGDPHIDAIR----ARG--LPAVIA----DQPAREEGM-PFIAPNN 173 (366)
T ss_dssp HHHHHHHHTCCCSCEEEESCCTTCHHHHHHH----HHT--CCEEEE----SSCCSCTTC-CEEEECH
T ss_pred HHHHHHHHhCCCCEEEEecCCCChHHHHHHH----HCC--CCEEEE----CCccCCCCC-CEEEeCh
Confidence 4568888999999999998754433333332 334 567754 444433232 3566553
No 142
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=23.51 E-value=3.3e+02 Score=27.05 Aligned_cols=122 Identities=10% Similarity=-0.004 Sum_probs=60.4
Q ss_pred CChhHHHhhCCcccCCC--eeEEecCCcccccCCCCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCc-
Q 042388 55 GNPEEIKKLFPKLFGQP--SARLVECDPKACSMENKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGP- 131 (567)
Q Consensus 55 ~~~~~i~~~fp~~~~~p--~~~~~~~~~~~~~~~~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~- 131 (567)
.+.+++++-|..+...- .+++... ..++||+|+.||.- +| +..++++.+.-.-..++-++.---
T Consensus 61 ~~~~~L~~~f~~la~~~~m~~~l~~~--------~~~~ri~vl~Sg~g----~n-l~~ll~~~~~g~l~~~i~~Visn~p 127 (288)
T 3obi_A 61 IPLASLRTGFGVIAAKFTMGWHMRDR--------ETRRKVMLLVSQSD----HC-LADILYRWRVGDLHMIPTAIVSNHP 127 (288)
T ss_dssp CCHHHHHHHHHHHHHHTTCEEEEEET--------TSCEEEEEEECSCC----HH-HHHHHHHHHTTSSCEEEEEEEESSC
T ss_pred CCHHHHHHHHHHHHHHcCCEEEeecc--------CCCcEEEEEEcCCC----CC-HHHHHHHHHCCCCCeEEEEEEcCCC
Confidence 34677777775443321 1333322 34789999999982 33 345555543322234555554211
Q ss_pred ccccCCCEEEcCccccccccccCCcccccccCCCCCChHHH-HHHHHHHHHcCCCEEEEecCchhHHHHHHHHH
Q 042388 132 AGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPEQF-KQAEETAKKLDLDGLVVIGGDDSNTNACLLAE 204 (567)
Q Consensus 132 ~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e~~-~~~~~~l~~~~id~LViIGGddS~t~A~~Lae 204 (567)
.. +..+...=|-...--.+.+ .+.+.+ +++++.+++++.|.+|+.| .+-.-....|..
T Consensus 128 ~~-------------~~~~A~~~gIp~~~~~~~~-~~r~~~~~~~~~~l~~~~~Dlivlag-y~~il~~~~l~~ 186 (288)
T 3obi_A 128 RE-------------TFSGFDFGDIPFYHFPVNK-DTRRQQEAAITALIAQTHTDLVVLAR-YMQILSDEMSAR 186 (288)
T ss_dssp GG-------------GSCCTTTTTCCEEECCCCT-TTHHHHHHHHHHHHHHHTCCEEEESS-CCSCCCHHHHHH
T ss_pred hh-------------HHHHHHHcCCCEEEeCCCc-ccHHHHHHHHHHHHHhcCCCEEEhhh-hhhhCCHHHHhh
Confidence 11 1111111122221111112 233334 4678999999999776665 554444444543
No 143
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=23.03 E-value=54 Score=30.38 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=31.0
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccC
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 222 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 222 (567)
+++.+.+.++..++.+++.+|.+-|- +..-.-.++- ....+|||||-..
T Consensus 43 ~p~~~~~~~~~a~~~g~~ViIa~AG~-aa~LpgvvA~-----~t~~PVIgVP~~~ 91 (163)
T 3ors_A 43 TPKMMVQFASEARERGINIIIAGAGG-AAHLPGMVAS-----LTTLPVIGVPIET 91 (163)
T ss_dssp SHHHHHHHHHHTTTTTCCEEEEEEES-SCCHHHHHHH-----HCSSCEEEEEECC
T ss_pred CHHHHHHHHHHHHhCCCcEEEEECCc-hhhhHHHHHh-----ccCCCEEEeeCCC
Confidence 67778888888888888865555433 2222223332 2467999999643
No 144
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=22.68 E-value=46 Score=29.72 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=20.6
Q ss_pred HHHHHHHHhcCCCCccEEEecccCcCCC
Q 042388 199 ACLLAENFRSKDMKTRVIGCPKTIDGDL 226 (567)
Q Consensus 199 A~~Lae~~~~~g~~i~VIgVPKTIDNDL 226 (567)
...|.+.+.+.+...-|||.|++.||..
T Consensus 42 ~~~l~~li~e~~v~~iVvGlP~~mdGt~ 69 (138)
T 1nu0_A 42 WNIIERLLKEWQPDEIIVGLPLNMDGTE 69 (138)
T ss_dssp HHHHHHHHHHHCCSEEEEEEEECTTSCB
T ss_pred HHHHHHHHHHcCCCEEEEecccCCCcCc
Confidence 3455555555677788999999999854
No 145
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=22.29 E-value=55 Score=30.61 Aligned_cols=48 Identities=23% Similarity=0.315 Sum_probs=31.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEeccc
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT 221 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT 221 (567)
+++.+.+.++..++.+++.+|.+.|- +..-.-.++- ....+|||||-.
T Consensus 52 ~p~~~~~~~~~a~~~g~~ViIa~AG~-aa~LpgvvA~-----~t~~PVIgVP~~ 99 (174)
T 3kuu_A 52 TPDRLFSFAEQAEANGLHVIIAGNGG-AAHLPGMLAA-----KTLVPVLGVPVQ 99 (174)
T ss_dssp CHHHHHHHHHHTTTTTCSEEEEEEES-SCCHHHHHHH-----TCSSCEEEEEEC
T ss_pred CHHHHHHHHHHHHhCCCcEEEEECCh-hhhhHHHHHh-----ccCCCEEEeeCC
Confidence 67788888888888899965555443 2222223332 346899999964
No 146
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=22.28 E-value=2.2e+02 Score=27.89 Aligned_cols=88 Identities=16% Similarity=0.240 Sum_probs=52.6
Q ss_pred CCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCC
Q 042388 88 KSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIE 167 (567)
Q Consensus 88 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~ 167 (567)
+..+|||++..-..|=...++.|+-+.++.. ||. ++ + .+...
T Consensus 65 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----------g~~------~~-~--------~~~~~------------ 106 (348)
T 3bil_A 65 RSNTIGVIVPSLINHYFAAMVTEIQSTASKA-----------GLA------TI-I--------TNSNE------------ 106 (348)
T ss_dssp ---CEEEEESCSSSHHHHHHHHHHHHHHHHT-----------TCC------EE-E--------EECTT------------
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc-----------CCE------EE-E--------EeCCC------------
Confidence 3468999998777777788888888876542 221 10 0 00111
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEec
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCP 219 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVP 219 (567)
+.+.....++.+...++||+|+.+.+.+... + +.+.+.+ ++||.+=
T Consensus 107 ~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~---~-~~l~~~~--iPvV~i~ 152 (348)
T 3bil_A 107 DATTMSGSLEFLTSHGVDGIICVPNEECANQ---L-EDLQKQG--MPVVLVD 152 (348)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEECCCGGGHHH---H-HHHHHC---CCEEEES
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeCCCCChHH---H-HHHHhCC--CCEEEEc
Confidence 2344556778888899999999998765322 2 2333334 5677653
No 147
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=22.17 E-value=41 Score=30.31 Aligned_cols=50 Identities=22% Similarity=0.249 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCC
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLK 227 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 227 (567)
+++.+++.+++.+.+-++||||-.-...+..+.+ .+.+--+|..+++|-.
T Consensus 81 ~~~~~l~~l~~~~~~~i~viGG~~l~~~~l~lvD-------el~lt~ip~~~~G~~~ 130 (162)
T 1vdr_A 81 SVEEAVDIAASLDAETAYVIGGAAIYALFQPHLD-------RMVLSRVPGEYEGDTY 130 (162)
T ss_dssp SHHHHHHHHHHTTCSCEEEEECHHHHHHHGGGCS-------EEEEEEEEEECCCSEE
T ss_pred CHHHHHHHHHhCCCCcEEEECCHHHHHHHHHhCC-------EEEEEEEccccccCEE
Confidence 4677888888878888999999776666554322 4678888999988854
No 148
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=22.15 E-value=57 Score=30.74 Aligned_cols=48 Identities=19% Similarity=0.314 Sum_probs=31.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCc-hhHHHHHHHHHHHhcCCCCccEEEecccC
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGD-DSNTNACLLAENFRSKDMKTRVIGCPKTI 222 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGd-dS~t~A~~Lae~~~~~g~~i~VIgVPKTI 222 (567)
+++.+.+.++..++.+++.+|.+-|- +.+-+ .++- ....+|||||-..
T Consensus 53 ~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpg--vvA~-----~t~~PVIgVP~~~ 101 (183)
T 1o4v_A 53 TPDRMFEYAKNAEERGIEVIIAGAGGAAHLPG--MVAS-----ITHLPVIGVPVKT 101 (183)
T ss_dssp CHHHHHHHHHHTTTTTCCEEEEEEESSCCHHH--HHHH-----HCSSCEEEEEECC
T ss_pred CHHHHHHHHHHHHhCCCcEEEEecCcccccHH--HHHh-----ccCCCEEEeeCCC
Confidence 67788888888888889865554332 22222 2332 2467999999755
No 149
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=22.00 E-value=56 Score=30.35 Aligned_cols=47 Identities=26% Similarity=0.374 Sum_probs=31.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCc-hhHHHHHHHHHHHhcCCCCccEEEeccc
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGD-DSNTNACLLAENFRSKDMKTRVIGCPKT 221 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGd-dS~t~A~~Lae~~~~~g~~i~VIgVPKT 221 (567)
+++.+.+.++.+++.+++.+|.+-|- +.+-+ .++- ....+|||||-.
T Consensus 45 tp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg--vvA~-----~t~~PVIgVP~~ 92 (166)
T 3oow_A 45 TPDKMFDYAETAKERGLKVIIAGAGGAAHLPG--MVAA-----KTTLPVLGVPVK 92 (166)
T ss_dssp CHHHHHHHHHHTTTTTCCEEEEEECSSCCHHH--HHHH-----TCSSCEEEEECC
T ss_pred CHHHHHHHHHHHHhCCCcEEEEECCcchhhHH--HHHh-----ccCCCEEEeecC
Confidence 67888888888888888877766543 33322 2332 346899999963
No 150
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=21.80 E-value=1.1e+02 Score=31.47 Aligned_cols=45 Identities=20% Similarity=0.252 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEE
Q 042388 170 EQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVI 216 (567)
Q Consensus 170 e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VI 216 (567)
.+++.+++.+-+ ..|.++||||-.|. |...|+|-+++.|.+.-.|
T Consensus 213 ~~RQ~av~~lA~-~vD~miVVGg~nSS-NT~rL~eia~~~g~~ty~I 257 (328)
T 3szu_A 213 TNRQEAVRALAE-QAEVVLVVGSKNSS-NSNRLAELAQRMGKRAFLI 257 (328)
T ss_dssp HHHHHHHHHHHH-HCSEEEEECCTTCH-HHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHH-hCCEEEEeCCCCCc-hHHHHHHHHHHhCCCEEEe
Confidence 456666666655 39999999997764 4467888888777543333
No 151
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=21.57 E-value=3.4e+02 Score=25.26 Aligned_cols=49 Identities=10% Similarity=0.022 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHcCCCEEEEecCch----hHHHHHHHHHHHhcCCCCccEEEec
Q 042388 171 QFKQAEETAKKLDLDGLVVIGGDD----SNTNACLLAENFRSKDMKTRVIGCP 219 (567)
Q Consensus 171 ~~~~~~~~l~~~~id~LViIGGdd----S~t~A~~Lae~~~~~g~~i~VIgVP 219 (567)
.++.+++.+++++++++=+...+. +-..+..+.+.+++.|+++..++.|
T Consensus 17 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 69 (281)
T 3u0h_A 17 SLVLYLDLARETGYRYVDVPFHWLEAEAERHGDAAVEAMFQRRGLVLANLGLP 69 (281)
T ss_dssp CHHHHHHHHHHTTCSEECCCHHHHHHHHHHHCHHHHHHHHHTTTCEECCEECC
T ss_pred CHHHHHHHHHHcCCCEEEecHHHHHHHhcccCHHHHHHHHHHcCCceEEeccc
Confidence 467889999999999998776643 3345677888888889887777766
No 152
>1pzx_A Hypothetical protein APC36103; structural genomics, two domains containing mixed alpha/beta structures, PSI; HET: PLM; 2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
Probab=21.27 E-value=3.9e+02 Score=26.28 Aligned_cols=159 Identities=15% Similarity=0.162 Sum_probs=87.0
Q ss_pred EcCccccccccccCCcccccccCCCCCChHHHHHHHHHHHHcCCCEEEEe----cCchhHHHHHHHHHHHhc-C-CCCcc
Q 042388 141 ELSTEYIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVI----GGDDSNTNACLLAENFRS-K-DMKTR 214 (567)
Q Consensus 141 eLt~~~v~~~~n~GG~~~LGS~R~k~~~~e~~~~~~~~l~~~~id~LViI----GGddS~t~A~~Lae~~~~-~-g~~i~ 214 (567)
+++.+++......++ +-.|| .+ ++++|.++.+.+.+.+ +.+++| |=.||..+|...++.+.+ . +.++.
T Consensus 44 di~~~efy~~~~~~~--~p~TS--qp-s~~~~~~~f~~l~~~g-~~ii~i~iSs~LSGTy~sA~~aa~~~~ee~~~~~I~ 117 (289)
T 1pzx_A 44 TIEPKQVYDAMRQGH--TVKTA--QP-SPLAMKELFLPYAKEN-RPCLYIAFSSKLSGTYQTAMAVRSELLDEYPEFRLT 117 (289)
T ss_dssp TBCHHHHHHHHTTTC--CCEEE--CC-CHHHHHHHHHHHHHTT-CCEEEEECCTTTCSHHHHHHHHHHHHHHHSTTCCEE
T ss_pred CCCHHHHHHHHHhCC--CCeeC--CC-CHHHHHHHHHHHHhCC-CeEEEEECCCchhHHHHHHHHHHHhhHhhCCCCeEE
Confidence 466655444444433 22333 23 6788999998887777 566666 347888888888877543 1 33555
Q ss_pred EEEecccCcCCCCCCCCCCCCChHhHHHHHHHHHHH------HHH---HHhhcCCeeEEEEec------CCCCcHHHH-H
Q 042388 215 VIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGN------VMT---DARSTGKYYHFVRLM------GRAASHITL-E 278 (567)
Q Consensus 215 VIgVPKTIDNDL~~~~ie~S~GFdTA~k~~ae~I~n------i~~---da~S~~k~~~fVevM------GR~ag~LAL-~ 278 (567)
|| |.-. .|.|..-.+...++++.+ |.. +.....+.||+|+.. ||=+.--|+ .
T Consensus 118 Vi------DS~~------~s~g~g~~v~~A~~l~~~G~s~eeI~~~l~~~~~~~~~~f~v~~L~~L~kGGRis~~~a~ig 185 (289)
T 1pzx_A 118 II------DSKC------ASLGQGLAVMKAVELAKQNTPYNLLCETIESYCRHMEHIFTVDNLDYLARGGRISKTAAAFG 185 (289)
T ss_dssp EE------ECCC------CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTEEEEEECSCHHHHHHHTSCC-------
T ss_pred EE------cCch------hhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCEEEEEeCCHHHHHHCCCccHHHHHHH
Confidence 55 3322 266766666666655432 222 223333457777765 554433332 3
Q ss_pred hhhhcCCcEEEE-CC-cchhhhcchHhHHHHHHHHHHHHHH
Q 042388 279 CALQTHPNITII-GE-EVAAKKQTLKNVTDYITDIICKRSE 317 (567)
Q Consensus 279 ~aLat~pnivlI-pE-e~~~~~~tL~~iv~~i~d~I~~R~~ 317 (567)
..|.-.|=+.+- ++ ++..+-.+.+..++.+.+.+.++..
T Consensus 186 ~lL~IKPil~~~~G~l~~~~KvRg~kka~~~l~~~~~~~~~ 226 (289)
T 1pzx_A 186 GLLNIKPLLHVEDGALIPLEKWRGRKKVLKRMVELMGERGD 226 (289)
T ss_dssp ---CEEEEEEEETTEEEEEEEEESHHHHHHHHHHHHHHHCS
T ss_pred HhhCceEEEEEECCEEEEeeccCCHHHHHHHHHHHHHHHhc
Confidence 335556766553 11 1344556666777778888877653
No 153
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=21.16 E-value=4e+02 Score=26.41 Aligned_cols=99 Identities=11% Similarity=-0.011 Sum_probs=49.3
Q ss_pred CCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccCCCCC
Q 042388 88 KSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIE 167 (567)
Q Consensus 88 ~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R~k~~ 167 (567)
.++||+|+.||.- + .+..++++.+.-.-..++-++.---..- +..+...=|-...--...+ .
T Consensus 87 ~~~ri~vl~Sg~g----~-nl~~ll~~~~~g~l~~~i~~Visn~~~a------------~~~~A~~~gIp~~~~~~~~-~ 148 (287)
T 3nrb_A 87 DRKKVVIMVSKFD----H-CLGDLLYRHRLGELDMEVVGIISNHPRE------------ALSVSLVGDIPFHYLPVTP-A 148 (287)
T ss_dssp CCCEEEEEECSCC----H-HHHHHHHHHHHTSSCCEEEEEEESSCGG------------GCCCCCCTTSCEEECCCCG-G
T ss_pred CCcEEEEEEeCCC----c-CHHHHHHHHHCCCCCeEEEEEEeCChHH------------HHHHHHHcCCCEEEEeccC-c
Confidence 4689999999983 3 3345555544322335666555222110 1111111122111111111 1
Q ss_pred ChHHH-HHHHHHHHHcCCCEEEEecCchhHHHHHHHHHH
Q 042388 168 TPEQF-KQAEETAKKLDLDGLVVIGGDDSNTNACLLAEN 205 (567)
Q Consensus 168 ~~e~~-~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~ 205 (567)
+.+.+ +++++.+++++.|.+|+. |.+-.-....|..+
T Consensus 149 ~r~~~~~~~~~~l~~~~~Dlivla-gym~il~~~~l~~~ 186 (287)
T 3nrb_A 149 TKAAQESQIKNIVTQSQADLIVLA-RYMQILSDDLSAFL 186 (287)
T ss_dssp GHHHHHHHHHHHHHHHTCSEEEES-SCCSCCCHHHHHHH
T ss_pred chhhHHHHHHHHHHHhCCCEEEhh-hhhhhcCHHHHhhc
Confidence 23333 467899999999976665 45544444555443
No 154
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=21.07 E-value=5.7e+02 Score=24.68 Aligned_cols=30 Identities=3% Similarity=-0.178 Sum_probs=25.4
Q ss_pred CcEEEEEecCCCC-chhhHHHHHHHHHHHHh
Q 042388 89 SLKIGVVLSGGQA-PGGHNVISGIFDYLQER 118 (567)
Q Consensus 89 ~~~IgIv~sGG~a-PG~nnvI~gl~~~l~~~ 118 (567)
..+||+++.+-.. |=...++.|+-++++..
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~ 33 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDL 33 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHc
Confidence 4699999999877 88899999999887654
No 155
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=21.04 E-value=2.1e+02 Score=25.42 Aligned_cols=48 Identities=25% Similarity=0.303 Sum_probs=38.0
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEec
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCP 219 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVP 219 (567)
++++++++++.+.+- +-++++|--.|...|..++..|...|. +|..++
T Consensus 25 ~~~~l~~~~~~i~~a--~~I~i~G~G~S~~~a~~~~~~l~~~g~--~~~~~~ 72 (187)
T 3sho_A 25 QPEAIEAAVEAICRA--DHVIVVGMGFSAAVAVFLGHGLNSLGI--RTTVLT 72 (187)
T ss_dssp CHHHHHHHHHHHHHC--SEEEEECCGGGHHHHHHHHHHHHHTTC--CEEEEC
T ss_pred CHHHHHHHHHHHHhC--CEEEEEecCchHHHHHHHHHHHHhcCC--CEEEec
Confidence 678899999999876 589999988899889888888876554 455443
No 156
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=20.62 E-value=1.6e+02 Score=27.68 Aligned_cols=32 Identities=13% Similarity=0.064 Sum_probs=24.7
Q ss_pred CCCcEEEEEec-CCCCchhhHHHHHHHHHHHHh
Q 042388 87 NKSLKIGVVLS-GGQAPGGHNVISGIFDYLQER 118 (567)
Q Consensus 87 ~~~~~IgIv~s-GG~aPG~nnvI~gl~~~l~~~ 118 (567)
.+..+|||++. .-.-|-...++.|+-+.++..
T Consensus 9 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~ 41 (289)
T 3g85_A 9 QSKPTIALYWSSDISVNIISRFLRGLQSKLAKQ 41 (289)
T ss_dssp --CCEEEEEEETTSCGGGHHHHHHHHHHHHHHT
T ss_pred CCCceEEEEeccccchHHHHHHHHHHHHHHHHc
Confidence 45679999997 567788889999999887653
No 157
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=20.45 E-value=5.8e+02 Score=24.56 Aligned_cols=142 Identities=18% Similarity=0.161 Sum_probs=0.0
Q ss_pred CCCCcEEEEEec--CCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEcCccccccccccCCcccccccC
Q 042388 86 ENKSLKIGVVLS--GGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGR 163 (567)
Q Consensus 86 ~~~~~~IgIv~s--GG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R 163 (567)
..++.+||+++. |..+|-+..+..|+-.++...+ |.+.+.-++| .+.++++
T Consensus 13 ~~~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~n-------------g~~~g~~~~l------~~~d~~~-------- 65 (375)
T 4evq_A 13 QAGALKVGLLLPYSGTYAPLGEAITRGLELYVQSQG-------------GKLGGRSISF------VKVDDES-------- 65 (375)
T ss_dssp --CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTT-------------TEETTEEEEE------EEEECTT--------
T ss_pred hCCCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhC-------------CCcCCEEEEE------EEecCCC--------
Q ss_pred CCCCChHHHHHHHHHHHHc-CCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEecccCcCCCCCCCCCCCCChHhHHH
Q 042388 164 DKIETPEQFKQAEETAKKL-DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACK 242 (567)
Q Consensus 164 ~k~~~~e~~~~~~~~l~~~-~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~S~GFdTA~k 242 (567)
+++.-.+.++.+... +++++|...+......+..+.+.. ++++|..=.|-+.=......+..|-....-.
T Consensus 66 ----~~~~~~~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~-----~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (375)
T 4evq_A 66 ----APPKATELTTKLIQSEKADVLIGTVHSGVAMAMVKIARED-----GIPTIVPNAGADIITRAMCAPNVFRTSFANG 136 (375)
T ss_dssp ----CHHHHHHHHHCCCCCSCCSEEEECSSHHHHHHHHHHHHHH-----CCCEEESSCCCGGGGTTTCCTTEEESSCCHH
T ss_pred ----CHHHHHHHHHHHHhcCCceEEEcCCccHHHHHHHHHHHHc-----CceEEecCCCChhhcccCCCCCEEEeeCChH
Q ss_pred HHHHHHHHHHHHHhhcCCeeEEE
Q 042388 243 IFSEMIGNVMTDARSTGKYYHFV 265 (567)
Q Consensus 243 ~~ae~I~ni~~da~S~~k~~~fV 265 (567)
..+..+-....+- -.+++.+|
T Consensus 137 ~~~~~~~~~l~~~--g~~~ia~i 157 (375)
T 4evq_A 137 QIGRATGDAMIKA--GLKKAVTV 157 (375)
T ss_dssp HHHHHHHHHHHHT--TCCEEEEE
T ss_pred hHHHHHHHHHHHc--CCcEEEEE
No 158
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=20.45 E-value=2.3e+02 Score=26.93 Aligned_cols=96 Identities=16% Similarity=0.236 Sum_probs=48.1
Q ss_pred CCCcEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCC---cccccCCCEEEcCccccccccccCCcccccccC
Q 042388 87 NKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGG---PAGIMKCKYVELSTEYIYPYRNQGGFDMICSGR 163 (567)
Q Consensus 87 ~~~~~IgIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G---~~GLl~~~~~eLt~~~v~~~~n~GG~~~LGS~R 163 (567)
.+++||+|+.||. ++| ...++++++.. .+.+|.++.-- ..|+ +.-... |-...--.+
T Consensus 3 ~~~~riavl~SG~----Gsn-l~all~~~~~~-~~~eI~~Vis~~~~a~~~-------------~~A~~~-gIp~~~~~~ 62 (215)
T 3tqr_A 3 REPLPIVVLISGN----GTN-LQAIIGAIQKG-LAIEIRAVISNRADAYGL-------------KRAQQA-DIPTHIIPH 62 (215)
T ss_dssp -CCEEEEEEESSC----CHH-HHHHHHHHHTT-CSEEEEEEEESCTTCHHH-------------HHHHHT-TCCEEECCG
T ss_pred CCCcEEEEEEeCC----cHH-HHHHHHHHHcC-CCCEEEEEEeCCcchHHH-------------HHHHHc-CCCEEEeCc
Confidence 3468999999996 222 34455554332 34566665521 1111 111111 222211112
Q ss_pred CCCCChHHH-HHHHHHHHHcCCCEEEEecCchhHHHHHHHH
Q 042388 164 DKIETPEQF-KQAEETAKKLDLDGLVVIGGDDSNTNACLLA 203 (567)
Q Consensus 164 ~k~~~~e~~-~~~~~~l~~~~id~LViIGGddS~t~A~~La 203 (567)
.++.+.+.+ +++++.+++++.|.+|+.| .+-.-....|.
T Consensus 63 ~~~~~r~~~d~~~~~~l~~~~~Dliv~ag-y~~il~~~~l~ 102 (215)
T 3tqr_A 63 EEFPSRTDFESTLQKTIDHYDPKLIVLAG-FMRKLGKAFVS 102 (215)
T ss_dssp GGSSSHHHHHHHHHHHHHTTCCSEEEESS-CCSCCCHHHHH
T ss_pred cccCchhHhHHHHHHHHHhcCCCEEEEcc-chhhCCHHHHh
Confidence 223344444 4678899999999877766 44333344443
No 159
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=20.19 E-value=1.5e+02 Score=22.87 Aligned_cols=47 Identities=21% Similarity=0.180 Sum_probs=37.2
Q ss_pred CChHHHHHHHHHHHHcCCC---------EEEEecCchhHHHHHHHHHHHhcCCCCc
Q 042388 167 ETPEQFKQAEETAKKLDLD---------GLVVIGGDDSNTNACLLAENFRSKDMKT 213 (567)
Q Consensus 167 ~~~e~~~~~~~~l~~~~id---------~LViIGGddS~t~A~~Lae~~~~~g~~i 213 (567)
.++++-++..+.|++.+++ +-|.+|...+-..|..+.+.+++.|++.
T Consensus 18 ~~~~~A~~~~~~L~~~g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~g~~~ 73 (79)
T 1x60_A 18 KVKANADSLASNAEAKGFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGFDA 73 (79)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHHHhCCCCeEEecCCcEEEEEECCcCCHHHHHHHHHHHHHcCCce
Confidence 4667778888888888877 4577888888889998888888878753
No 160
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=20.10 E-value=1.5e+02 Score=27.00 Aligned_cols=150 Identities=13% Similarity=0.080 Sum_probs=70.4
Q ss_pred CCCCcEEEEEecCCCCchhhH-HHHHHHHHHHHhcCCCEEEEEeCCc-----ccc--cCCC--EEEcCccccccccccCC
Q 042388 86 ENKSLKIGVVLSGGQAPGGHN-VISGIFDYLQERTNGSKLYGFKGGP-----AGI--MKCK--YVELSTEYIYPYRNQGG 155 (567)
Q Consensus 86 ~~~~~~IgIv~sGG~aPG~nn-vI~gl~~~l~~~~~~~~v~Gf~~G~-----~GL--l~~~--~~eLt~~~v~~~~n~GG 155 (567)
...++||+|++. ||... -+.+.++.++..+-...+++..+|. .|+ +..+ +-+++.+..+.+.--||
T Consensus 20 ~~~~~kV~ill~----~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG 95 (193)
T 1oi4_A 20 AGLSKKIAVLIT----DEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGG 95 (193)
T ss_dssp TTCCCEEEEECC----TTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCB
T ss_pred hccCCEEEEEEC----CCCCHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCC
Confidence 345689999997 45443 2455566555443334445444443 222 0000 00111123344444455
Q ss_pred cccccccCCCCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHH-----------HHHHhcCCCCccEEEecccCcC
Q 042388 156 FDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLL-----------AENFRSKDMKTRVIGCPKTIDG 224 (567)
Q Consensus 156 ~~~LGS~R~k~~~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~L-----------ae~~~~~g~~i~VIgVPKTIDN 224 (567)
. |. + .+...+.+.+.++.+.+.+---.-|+.|---+..|-.| .+.|++.+ ..++--+-.+|+
T Consensus 96 ~---~~-~-~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~aGLL~Gr~~Tth~~~~~~l~~~~--~~~~~~~~v~Dg 168 (193)
T 1oi4_A 96 H---SP-D-YLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAG--AEFYDQEVVVDK 168 (193)
T ss_dssp T---HH-H-HHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHHTCCTTCEECCCGGGHHHHHHTT--CEECCSSCEEET
T ss_pred c---CH-H-HhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHCCccCCCEEEeChhHHHHHHHcC--CEEecCCEEEEC
Confidence 3 11 1 12122344555555555555444455554333333222 23344332 233333334566
Q ss_pred C-CCCCCCCCCCChHhHHHHHHHHHHHH
Q 042388 225 D-LKCKEVPTSFGFDTACKIFSEMIGNV 251 (567)
Q Consensus 225 D-L~~~~ie~S~GFdTA~k~~ae~I~ni 251 (567)
+ +- +|=|-.++..+.-.+|..+
T Consensus 169 ~~ii-----Ts~g~~~~~d~~l~li~~l 191 (193)
T 1oi4_A 169 DQLV-----TSRTPDDLPAFNREALRLL 191 (193)
T ss_dssp TTEE-----EESSGGGHHHHHHHHHHHH
T ss_pred CEEE-----ECCCcchHHHHHHHHHHHh
Confidence 5 43 6778888888777777665
No 161
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=20.01 E-value=54 Score=30.59 Aligned_cols=48 Identities=25% Similarity=0.348 Sum_probs=30.0
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCccEEEeccc
Q 042388 168 TPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT 221 (567)
Q Consensus 168 ~~e~~~~~~~~l~~~~id~LViIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT 221 (567)
+++.+.+..+..++.+++.+|.+-|- +..-.-.++ -....+|||||-.
T Consensus 51 ~p~~l~~~~~~a~~~g~~ViIa~AG~-aa~LpgvvA-----~~t~~PVIgVP~~ 98 (170)
T 1xmp_A 51 TPDYMFEYAETARERGLKVIIAGAGG-AAHLPGMVA-----AKTNLPVIGVPVQ 98 (170)
T ss_dssp SHHHHHHHHHHTTTTTCCEEEEEEES-SCCHHHHHH-----TTCCSCEEEEEEC
T ss_pred CHHHHHHHHHHHHhCCCcEEEEECCc-hhhhHHHHH-----hccCCCEEEeeCC
Confidence 57778888888888888855544332 222222232 2457899999975
Done!