RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 042388
(567 letters)
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer,
transferase; HET: FBP; 2.11A {Borrelia burgdorferi}
SCOP: c.89.1.1 PDB: 1kzh_A*
Length = 555
Score = 688 bits (1776), Expect = 0.0
Identities = 261/553 (47%), Positives = 362/553 (65%), Gaps = 18/553 (3%)
Query: 22 SELQTSRLNVSLPLPSVLKKTFNVV---DGAPSSASGNPEEIKKLFPKLFGQPSARLVEC 78
S + R LP++LKK FN + G + A + + +K+ F +G P E
Sbjct: 4 SLFKQERQKYIPKLPNILKKDFNNISLVYGENTEAIQDRQALKEFFKNTYGLPIISFTEG 63
Query: 79 DPKACSMENKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCK 138
+ +K+L IG++LSGG APGGHNVISG+FD +++ SKL+GFKGGP G+++
Sbjct: 64 ESSL--SFSKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLEND 121
Query: 139 YVELSTEYIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTN 198
+EL+ I YRN GGFD++ SGR KIET E + +A AK+ +L+ +++IGGDDSNTN
Sbjct: 122 KIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTN 181
Query: 199 ACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDARST 258
A +LAE F+ +VIG PKTID DL+ + SFGFD+A KI+SE+IGN+ DA ST
Sbjct: 182 AAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMST 241
Query: 259 GKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEA 318
KY+HFV+LMGR+ASH+ LECAL+THPNI I+ EEV AKK+TL + D + +I KRS
Sbjct: 242 KKYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLN 301
Query: 319 GYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDGVDQDG--------AWKKKLKSQSQE 370
G N+GV+++PEGLI+FIPEV+ L+ EL +I + + G + KL +
Sbjct: 302 GDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKG 361
Query: 371 LFELFPKAIQEQL---LLERDPHGNVQVAKIETEKMLIQMVETELNKMKQKGAYKGQFNG 427
++ P IQ +L +LERDPHGN V+++ TEK+ I+M+++ LN MK++G YKG F
Sbjct: 362 VYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKGSFTP 421
Query: 428 QSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGNLGEPVEEWTVGGTA 487
HFFGYEGR P+NFD++YCY+LGY A L+ G TG +S + NL +W GG
Sbjct: 422 VDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWIAGGVP 481
Query: 488 LTSLMDVERRHGKFKPVIKKAMVELEGIPFKTFASLREDWTIKNLYVSPGPIQFVGP--N 545
LT LM++E R+G+ KPVIKKA+V+LEG PFK F R+ W + NLY+ PGP+Q+ G
Sbjct: 482 LTMLMNMEERYGEKKPVIKKALVDLEGRPFKEFVKNRDKWALNNLYLYPGPVQYFGSSEI 541
Query: 546 ANDINHTLKLELG 558
++I TLKLEL
Sbjct: 542 VDEITETLKLELF 554
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei}
PDB: 3f5m_A*
Length = 487
Score = 140 bits (356), Expect = 2e-36
Identities = 87/386 (22%), Positives = 139/386 (36%), Gaps = 70/386 (18%)
Query: 85 MENKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMK---CKYVE 141
IG+V GG PG ++VI I N ++ GF+ G G+ K +E
Sbjct: 93 FNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIE 152
Query: 142 LSTEYIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACL 201
L + + GG ++ S R P+ K+ +T ++L ++ L +GGD + A +
Sbjct: 153 LHRGRVTNIHHYGG-TILGSSR----GPQDPKEMVDTLERLGVNILFTVGGDGTQRGALV 207
Query: 202 LAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDARSTGKY 261
+++ + + + V G PKTID DL +FGF TA + + I +A S
Sbjct: 208 ISQEAKRRGVDISVFGVPKTIDNDLSFSHR--TFGFQTAVEKAVQAIRAAYAEAVSANYG 265
Query: 262 YHFVRLMGRAASHITLECALQTHP-NITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGY 320
V+LMGR + I + A+ + NI ++ E + + V + +R
Sbjct: 266 VGVVKLMGRDSGFIAAQAAVASAQANICLVPEN----PISEQEVMSLL-----ERRFCHS 316
Query: 321 NYGVILIPEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFELFPKAIQ 380
VI++ EG + G D G KKL L E ++
Sbjct: 317 RSCVIIVAEG------------FGQDWGRGSGGYDASG--NKKLIDIGVILTEKVKAFLK 362
Query: 381 EQLLLERDPHGNVQVAKIETEKMLIQMVETELNKMKQKGAYKGQFNGQSHFFGYEGRCGL 440
R P V+ + Y R
Sbjct: 363 AN--KSRYPDSTVKY--------------IDP--------------------SYMIRACP 386
Query: 441 PTNFDANYCYALGYAAAALLHAGKTG 466
P+ DA +C L A AG TG
Sbjct: 387 PSANDALFCATLATLAVHEAMAGATG 412
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Nitrosospira
multiformis atcc 25196} PDB: 3k2q_A
Length = 419
Score = 132 bits (333), Expect = 8e-34
Identities = 68/431 (15%), Positives = 131/431 (30%), Gaps = 87/431 (20%)
Query: 85 MENKSLKIGVVLSGGQAPGGHNVISGIFDY-LQERTNGSKLYGFKGGPAGIMKCKYVELS 143
M K SGG + +G+ + ++ ++Y + G G + ++
Sbjct: 1 MAAK--NAFYAQSGGVTAVINASAAGVIEAARKQSGKIGRIYAGRNGIIGALTEDLIDTG 58
Query: 144 TE---YIYPYRNQGGFDMICSGRDKI----ETPEQFKQAEETAKKLDLDGLVVIGGDDSN 196
E I R S R K+ + ++++ E K D+ GG DS
Sbjct: 59 QESDAAISALRYTPS-GAFGSCRYKLKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSA 117
Query: 197 TNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDAR 256
+++ + + I PKT+D DL + GF + K + D
Sbjct: 118 DTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDC--CPGFGSVAKYIAVSTLEASFDVA 175
Query: 257 STG---KYYHFVRLMGRAASHITLECAL-----QTHPNITIIGEEVAAKKQTLKNVTDYI 308
S + +MGR A I L + P + + E K++ L V
Sbjct: 176 SMSATSTKVFVLEVMGRHAGWIAAAGGLASSPEREIPVVILFPEISFDKQKFLAKV---- 231
Query: 309 TDIICKRSEAGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQS 368
+ Y +++ EG+ + + D G +L +
Sbjct: 232 -----DSCVKKFGYCSVVVSEGVKG---------DDGKFLSDQGVRDAFG--HAQLGGVA 275
Query: 369 QELFELFPKAIQEQLLLERDPHGNVQVAKIETEKMLIQMVETELNKMKQKGAYKGQFNGQ 428
+ + ++E L ++
Sbjct: 276 PVVASM----VKEGL-------------GLKYH-------WGVA---------------- 295
Query: 429 SHFFGYEGRCG--LPTNFDANYCYALGYAAAALLHAGKTGLISSVGNLGEPVEEWTVGGT 486
Y R + + D YA+G AA G ++ ++ + +W VG
Sbjct: 296 ----DYLQRAARHIASKTDVEQAYAMGQAAVEFAVQGHNSVMPTIERISARPYQWKVGMA 351
Query: 487 ALTSLMDVERR 497
L+ + +VE+
Sbjct: 352 QLSQVANVEKM 362
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP;
2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Length = 320
Score = 124 bits (313), Expect = 1e-31
Identities = 71/264 (26%), Positives = 105/264 (39%), Gaps = 40/264 (15%)
Query: 91 KIGVVLSGGQAPGGHNVI-----SGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTE 145
KIGV+ SGG APG + I S + G ++ G G G+ + + V+L
Sbjct: 4 KIGVLTSGGDAPGMNAAIRGVVRSALT-------EGLEVMGIYDGYLGLYEDRMVQLDRY 56
Query: 146 YIYPYRNQGGFDMICSGRDK-IETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAE 204
+ N+GG + S R A E KK +D LVVIGGD S A L E
Sbjct: 57 SVSDMINRGG-TFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTE 115
Query: 205 NFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDARSTGKYYH- 263
M IG P TID D+K + + GF TA E I + + S H
Sbjct: 116 ------MGFPCIGLPGTIDNDIKGTDY--TIGFFTALSTVVEAIDRLRDTSSS-----HQ 162
Query: 264 ---FVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGY 320
V +MGR +TL A+ ++ E + + + + I G
Sbjct: 163 RISVVEVMGRYCGDLTLAAAIAGGCEFVVVPEV--------EFSREDLVNEIKAGIAKGK 214
Query: 321 NYGVILIPEGLIDFIPEVQQLIAE 344
+ ++ I E + D + E+ I +
Sbjct: 215 KHAIVAITEHMCD-VDELAHFIEK 237
Score = 29.3 bits (67), Expect = 3.5
Identities = 17/76 (22%), Positives = 24/76 (31%), Gaps = 13/76 (17%)
Query: 437 RCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGNLGEPVEEWTVGGTALTSLMDVER 496
R G P +D +G A LL AG G VG E + ++D
Sbjct: 253 RGGSPVPYDRILASRMGAYAIDLLLAGYGGRC--VGIQNEQLV--------HHDIIDAI- 301
Query: 497 RHGKFKPVIKKAMVEL 512
K K ++
Sbjct: 302 --ENMKRPFKGDWLDC 315
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A
{Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A*
1mto_A*
Length = 319
Score = 120 bits (303), Expect = 2e-30
Identities = 69/264 (26%), Positives = 108/264 (40%), Gaps = 40/264 (15%)
Query: 91 KIGVVLSGGQAPGGHNVI-----SGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTE 145
+IGV+ SGG +PG + + I+ + ++YG G AG++ K +L
Sbjct: 3 RIGVLTSGGDSPGMNAAVRAVVRKAIY-------HDVEVYGIYNGYAGLISGKIEKLELG 55
Query: 146 YIYPYRNQGGFDMICSGRDK-IETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAE 204
+ ++GG + + R +T E ++ KKL ++GLVVIGGD S A L E
Sbjct: 56 SVGDIIHRGG-TKLYTARCPEFKTVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTE 114
Query: 205 NFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDARSTGKYYH- 263
+G P TID D+ + + GFDTA + I + A S H
Sbjct: 115 ------HGFPCVGVPGTIDNDIPGTDF--TIGFDTALNTVIDAIDKIRDTATS-----HE 161
Query: 264 ---FVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGY 320
+ +MGR A I L L +I E I + + E G
Sbjct: 162 RTYVIEVMGRHAGDIALWAGLAGGAESILIPEA--------DYDMHEIIARLKRGHERGK 213
Query: 321 NYGVILIPEGLIDFIPEVQQLIAE 344
+ +I++ EG+ E + I E
Sbjct: 214 KHSIIIVAEGVGS-GVEFGKRIEE 236
Score = 28.6 bits (65), Expect = 5.2
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 437 RCGLPTNFDANYCYALGYAAAALLHAGKTG 466
R G P+ D LG A LL GK G
Sbjct: 252 RGGSPSAADRVLASRLGAYAVELLLEGKGG 281
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU
transferase; 1.85A {Lactobacillus delbrueckii subsp}
Length = 319
Score = 119 bits (302), Expect = 3e-30
Identities = 69/272 (25%), Positives = 111/272 (40%), Gaps = 43/272 (15%)
Query: 91 KIGVVLSGGQAPGGHNVI-----SGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTE 145
+IG++ SGG APG + + I NG +++G + G AG++ L +E
Sbjct: 3 RIGILTSGGDAPGMNAAVRAVTRVAIA-------NGLEVFGIRYGFAGLVAGDIFPLESE 55
Query: 146 YIYPYRNQGGFDMICSGRDK-IETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAE 204
+ N G + S R E E KK +D +VVIGGD S A L
Sbjct: 56 DVAHLINVSG-TFLYSARYPEFAEEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTR 114
Query: 205 NFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDARSTGKYYH- 263
IG P TID D+ + + G+DTAC + I + A S H
Sbjct: 115 ------HGFNSIGLPGTIDNDIPYTDA--TIGYDTACMTAMDAIDKIRDTASS-----HH 161
Query: 264 ---FVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGY 320
V +MGR I + + + +I E + I + + + E+G
Sbjct: 162 RVFIVNVMGRNCGDIAMRVGVACGADAIVIPER--------PYDVEEIANRLKQAQESGK 213
Query: 321 NYGVILIPEGLIDFIPEVQQLIAELNEILAHD 352
++G++++ EG++ Q +AEL + D
Sbjct: 214 DHGLVVVAEGVMT----ADQFMAELKKYGDFD 241
Score = 28.2 bits (64), Expect = 8.1
Identities = 13/30 (43%), Positives = 13/30 (43%)
Query: 437 RCGLPTNFDANYCYALGYAAAALLHAGKTG 466
R G PT D LG A LL GK G
Sbjct: 252 RGGTPTVSDRVLASKLGSEAVHLLLEGKGG 281
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 989
Score = 109 bits (273), Expect = 5e-25
Identities = 70/334 (20%), Positives = 120/334 (35%), Gaps = 52/334 (15%)
Query: 52 SASGNPEEIKKLFPKLFGQPSARLVECDP--KACSMENKSLKIGVVLSGGQAPGGHNVI- 108
S+ + K P F P + + + E KI ++ SGG APG + +
Sbjct: 171 SSYPSLNSKKITSPDFFLHPKKEVRSEESIVEQVKSEEGKKKIAIITSGGDAPGMNAAVR 230
Query: 109 ----SGIFDYLQERTNGSKLYGFKGGPAGIMKC--KYVELSTEYIYPYRNQGGFDMICSG 162
+GIF G K+Y G G++K EL + + + GG +I +
Sbjct: 231 AVTRAGIF-------YGCKVYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGG-TIIGTA 282
Query: 163 RDK-IETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRS------------- 208
R K QA +D LVV GGD S T A L + +
Sbjct: 283 RCKEFRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITK 342
Query: 209 ----KDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDARSTGKYYH- 263
++G +ID D+ + + G ++ + E++ + A S H
Sbjct: 343 EQYETHRNLTIVGLVGSIDNDMCGTDS--TIGAYSSLERIIELVDYIDATAAS-----HS 395
Query: 264 ---FVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGY 320
V +MGR + L + T + I E + + N D + + + E G
Sbjct: 396 RAFVVEVMGRHCGWLGLMSGIATGADYIFIPE----RPPSESNWKDDLKKVCLRHREKGR 451
Query: 321 NYGVILIPEGLID--FIPEVQQLIAELNEILAHD 352
+++ EG ID P + + ++ + D
Sbjct: 452 RKTTVIVAEGAIDDQLNPITSEEVKDVLVEIGLD 485
Score = 105 bits (264), Expect = 6e-24
Identities = 52/336 (15%), Positives = 111/336 (33%), Gaps = 29/336 (8%)
Query: 31 VSLPLPSVLKKTFNVVDGAPSSASGNPEEIKKLFPKLFGQPSARLVEC----DPKACSME 86
V PL + +T V + + + + ++ +L + F + D E
Sbjct: 539 VRQPLVESVAQTKTV---SAAIEAKDFDKALQLRDQEFATSYENFLSVSKYDDGSYLVPE 595
Query: 87 NKSLKIGVVLSGGQAPGGHNVI-----SGIFDYLQERTNGSKLYGFKGGPAGIMKCKYV- 140
+ L I ++ G + + + G +++ + G AG+++ V
Sbjct: 596 SSRLNIAIIHVGAPTSALNPATRVATLNSLA-------KGHRVFAIRNGFAGLIRHGAVR 648
Query: 141 ELSTEYIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNAC 200
EL+ + + N GG I + R + ++ DGL++IGG ++ T
Sbjct: 649 ELNWIDVEDWHNTGG-SEIGTNRSL--PSDDMGTVAYYFQQYKFDGLIIIGGFEAFTALY 705
Query: 201 LLAENF-RSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDARSTG 259
L + + P T+ ++ E S G DT S V A ++
Sbjct: 706 ELDAARAQYPIFNIPMCCLPATVSNNVPGTEY--SLGSDTCLNTLSGYCDAVKQSASASR 763
Query: 260 KYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAG 319
+ V + G + ++ L T E + +++ + +T +
Sbjct: 764 RRTFVVEVQGGYSGYLASYAGLITGALAVYTPENPINLQTVQEDI-ELLTRTYEEDDGKN 822
Query: 320 YNYGVILIPEGLIDFIPEVQQLIAELNEILAHDGVD 355
+ + + E LIA + +
Sbjct: 823 RSGKIFIHNEKASKVYTT--DLIAAIIGEAGKGRFE 856
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP;
3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Length = 762
Score = 106 bits (267), Expect = 3e-24
Identities = 51/284 (17%), Positives = 101/284 (35%), Gaps = 25/284 (8%)
Query: 78 CDPKACSMENKSLKIGVVLSGGQAPGGHNVI-----SGIFDYLQERTNGSKLYGFKGGPA 132
+ + ++ S + V+ G A G + + G+ G+++ G
Sbjct: 389 AHIRPPAPKSGSYTVAVMNVGAPAAGMNAAVRSTVRIGLI-------QGNRVLVVHDGFE 441
Query: 133 GIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVIGG 192
G K + E Y+ + QGG + S R + F+Q K ++ GLV+IGG
Sbjct: 442 GPAKGQIEEAGWSYVGGWTGQGG-SKLGSKRTL--PKKSFEQISANITKFNIQGLVIIGG 498
Query: 193 DDSNTNACLLAENF-RSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNV 251
++ T L E + ++ + P T+ ++ + S G DTA +
Sbjct: 499 FEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDF--SVGADTALNTICTTCDRI 556
Query: 252 MTDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDI 311
A T + + MG ++ L + I EE T++++ + +
Sbjct: 557 KQSAAGTKRRVFIIETMGGYCGYLATMAGLAAGADAAYIFEE----PFTIRDLQANVEHL 612
Query: 312 ICKRSEAGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDGVD 355
+ ++ + G++L E + I L D
Sbjct: 613 V-QKMKTTVKRGLVLRNEKCNENYTT--DFIFNLYSEEGKGIFD 653
Score = 101 bits (254), Expect = 9e-23
Identities = 60/279 (21%), Positives = 102/279 (36%), Gaps = 49/279 (17%)
Query: 84 SMENKSLKIGVVLSGGQAPGGHNVI-----SGIFDYLQERTNGSKLYGFKGGPAGIMKC- 137
I V+ SGG A G + + GIF G++++ G G++
Sbjct: 10 RTLGVGKAIAVLTSGGDAQGMNAAVRAVVRVGIF-------TGARVFFVHEGYQGLVDGG 62
Query: 138 -KYVELSTEYIYPYRNQGGFDMICSGRDK-IETPEQFKQAEETAKKLDLDGLVVIGGDDS 195
E + E + GG +I S R K E +A K + L VIGGD S
Sbjct: 63 DHIREATWESVSMMLQLGG-TVIGSARCKDFREREGRLRAAHNLVKRGITNLCVIGGDGS 121
Query: 196 NTNACLLAENF-----------------RSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFD 238
T A + ++ ++G +ID D ++ + G D
Sbjct: 122 LTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCGTDM--TIGTD 179
Query: 239 TACKIFSEMIGNVMTDARSTGKYYH----FVRLMGRAASHITLECALQTHPNITIIGEEV 294
+A +E++ + T A+S H + +MGR ++ L +L + I E
Sbjct: 180 SALHRITEIVDAITTTAQS-----HQRTFVLEVMGRHCGYLALVTSLSCGADWVFIPE-- 232
Query: 295 AAKKQTLKNVTDYITDIICKRSEAGYNYGVILIPEGLID 333
N D++ + + G +I++ EG ID
Sbjct: 233 ---CPPDDNWEDHLCRRLSETRTRGSRLNIIIVAEGAID 268
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 787
Score = 105 bits (265), Expect = 5e-24
Identities = 61/293 (20%), Positives = 109/293 (37%), Gaps = 50/293 (17%)
Query: 91 KIGVVLSGGQAPGGHNVI-----SGIFDYLQERTNGSKLYGFKGGPAGIMK--CKYVELS 143
KI V+ SGG +PG + + +GI G ++ G G+++ +++
Sbjct: 7 KIAVMTSGGDSPGMNAAVRAVVRTGIH-------FGCDVFAVYEGYEGLLRGGKYLKKMA 59
Query: 144 TEYIYPYRNQGGFDMICSGRDK-IETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLL 202
E + + ++GG +I + R E +QA +D LVV GGD S T A L
Sbjct: 60 WEDVRGWLSEGG-TLIGTARSMEFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLF 118
Query: 203 AENFRSKDMKTR-----------------VIGCPKTIDGDLKCKEVPTSFGFDTACKIFS 245
+ S + ++G +ID D+ + + G +A +
Sbjct: 119 RHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSGTDS--TIGAYSALERIC 176
Query: 246 EMIGNVMTDARSTGKYYH----FVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTL 301
EM+ + A+S H V +MGR + L + T + I E +
Sbjct: 177 EMVDYIDATAKS-----HSRAFVVEVMGRHCGWLALMAGIATGADYIFIPE----RAVPH 227
Query: 302 KNVTDYITDIICKRSEAGYNYGVILIPEGLID--FIPEVQQLIAELNEILAHD 352
D + ++ + G I++ EG +D P + + L D
Sbjct: 228 GKWQDELKEVCQRHRSKGRRNNTIIVAEGALDDQLNPVTANDVKDALIELGLD 280
Score = 105 bits (264), Expect = 5e-24
Identities = 55/336 (16%), Positives = 112/336 (33%), Gaps = 29/336 (8%)
Query: 31 VSLPLPSVLKKTFNVVDGAPSSASGNPEEIKKLFPKLFGQPSARLVEC----DPKACSME 86
+ +PL +K T +V A + + + ++ L F + + D
Sbjct: 334 IRMPLVESVKLTKSV---ATAIENKDFDKAISLRDTEFIELYENFLSTTVKDDGSELLPV 390
Query: 87 NKSLKIGVVLSGGQAPGGHNVI-----SGIFDYLQERTNGSKLYGFKGGPAGIMK-CKYV 140
+ L IG+V G + + + +G K Y G +G+++ +
Sbjct: 391 SDRLNIGIVHVGAPSAALNAATRAATLYCLS-------HGHKPYAIMNGFSGLIQTGEVK 443
Query: 141 ELSTEYIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNAC 200
ELS + + N GG I + R E +K LDGL+++GG + +
Sbjct: 444 ELSWIDVENWHNLGG-SEIGTNRSV--ASEDLGTIAYYFQKNKLDGLIILGGFEGFRSLK 500
Query: 201 LLAENF-RSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDARSTG 259
L + + + P T+ ++ E S G DT ++ A +T
Sbjct: 501 QLRDGRTQHPIFNIPMCLIPATVSNNVPGTEY--SLGVDTCLNALVNYTDDIKQSASATR 558
Query: 260 KYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAG 319
+ + G + +I L T E+ +++ + +
Sbjct: 559 RRVFVCEVQGGHSGYIASFTGLITGAVSVYTPEKKIDLASIREDI-TLLKENFRHDKGEN 617
Query: 320 YNYGVILIPEGLIDFIPEVQQLIAELNEILAHDGVD 355
N +++ E QL+A++ +
Sbjct: 618 RNGKLLVRNEQASSVYST--QLLADIISEASKGKFG 651
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 766
Score = 104 bits (262), Expect = 1e-23
Identities = 58/311 (18%), Positives = 115/311 (36%), Gaps = 26/311 (8%)
Query: 31 VSLPLPSVLKKTFNVVDGAPSSASGNPEEIKKLFPKLFGQPSARLVEC----DPKACSME 86
V PL +K T V A + + + + L F + + + +
Sbjct: 334 VRKPLMESVKLTKAV---AEAIQAKDFKRAMSLRDTEFIEHLNNFMAINSADHNEPKLPK 390
Query: 87 NKSLKIGVVLSGGQAPGGHNVI-----SGIFDYLQERTNGSKLYGFKGGPAGIMKCKYV- 140
+K LKI +V G A G ++ + + G + Y G +G+ + + V
Sbjct: 391 DKRLKIAIVNVGAPAGGINSAVYSMATYCMS-------QGHRPYAIYNGWSGLARHESVR 443
Query: 141 ELSTEYIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNAC 200
L+ + + ++++GG I + R +K + DGL+++GG ++ +
Sbjct: 444 SLNWKDMLGWQSRGG-SEIGTNRVT-PEEADLGMIAYYFQKYEFDGLIIVGGFEAFESLH 501
Query: 201 LLAENF-RSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDARSTG 259
L + ++ P T+ ++ E S G DTA E V A ST
Sbjct: 502 QLERARESYPAFRIPMVLIPATLSNNVPGTEY--SLGSDTALNALMEYCDVVKQSASSTR 559
Query: 260 KYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAG 319
V G + ++ +L ++ + EE + +Q +++ +Y+ K G
Sbjct: 560 GRAFVVDCQGGNSGYLATYASLAVGAQVSYVPEEGISLEQLSEDI-EYLAQSFEKAEGRG 618
Query: 320 YNYGVILIPEG 330
+IL
Sbjct: 619 RFGKLILKSTN 629
Score = 100 bits (250), Expect = 3e-22
Identities = 63/278 (22%), Positives = 97/278 (34%), Gaps = 59/278 (21%)
Query: 91 KIGVVLSGGQAPGGHNVI-----SGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTE 145
I V+ SGG APG ++ + S IF G + + G G+ V E
Sbjct: 5 AIAVMTSGGDAPGMNSNVRAIVRSAIF-------KGCRAFVVMEGYEGL-----VRGGPE 52
Query: 146 YIYPYR--------NQGGFDMICSGRDK-IETPEQFKQAEETAKKLDLDGLVVIGGDDSN 196
YI + +GG I + R + E + + +D L+V GGD S
Sbjct: 53 YIKEFHWEDVRGWSAEGG-TNIGTARCMEFKKREGRLLGAQHLIEAGVDALIVCGGDGSL 111
Query: 197 TNACLLAENFRSKDMKTR-----------------VIGCPKTIDGDLKCKEVPTSFGFDT 239
T A L + S + + G +ID D+ + + G +
Sbjct: 112 TGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMSTTDA--TIGAYS 169
Query: 240 ACKIFSEMIGNVMTDARSTGKYYH----FVRLMGRAASHITLECALQTHPNITIIGEEVA 295
A + I V A S H V +MGR + L + T + I E
Sbjct: 170 ALDRICKAIDYVEATANS-----HSRAFVVEVMGRNCGWLALLAGIATSADYIFIPE--- 221
Query: 296 AKKQTLKNVTDYITDIICKRSEAGYNYGVILIPEGLID 333
K T D + DI+ K G ++++ EG I
Sbjct: 222 -KPATSSEWQDQMCDIVSKHRSRGKRTTIVVVAEGAIA 258
Score = 29.9 bits (68), Expect = 2.3
Identities = 8/66 (12%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Query: 439 GLPTNFDANYCYALGYAAAALLHAGKTGLISSVGNLGEPVEEWTVGGTALTSLMDVERRH 498
GLP+ D + A + + + + E + +++ V+ H
Sbjct: 665 GLPSPIDRTRATRMAIKAVGFIKDNQAAIAEARAA-EENFNADDKTISDTAAVVGVKGSH 723
Query: 499 GKFKPV 504
+ +
Sbjct: 724 VVYNSI 729
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 941
Score = 104 bits (261), Expect = 2e-23
Identities = 61/290 (21%), Positives = 102/290 (35%), Gaps = 59/290 (20%)
Query: 79 DPKACSMENKSLKIGVVLSGGQAPGGHNVI-----SGIFDYLQERTNGSKLYGFKGGPAG 133
D + IGV+ SGG +PG + + +GI+ G K++ G G
Sbjct: 171 DDSEKLLNPVRKTIGVMTSGGDSPGMNPFVRAVVRAGIY-------KGCKVFCIHEGYEG 223
Query: 134 IMKCKYVELSTEYIYPYR--------NQGGFDMICSGRDK-IETPEQFKQAEETAKKLDL 184
+ V +YI + +GG I + R K +A + + +
Sbjct: 224 L-----VRGGEKYIKETQWHDVRGWLVEGG-TNIGTARCKEFRERSGRLKACKNMIDMGI 277
Query: 185 DGLVVIGGDDSNTNACLLAENFRSKDMKTR-----------------VIGCPKTIDGDLK 227
D L+V GGD S T A + S + + G +ID D+
Sbjct: 278 DALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMS 337
Query: 228 CKEVPTSFGFDTACKIFSEMIGNVMTDARSTGKYYH----FVRLMGRAASHITLECALQT 283
+ + G ++ I + A S H V +MGR + L L T
Sbjct: 338 STDA--TIGAFSSLDRICRAIDYIDATANS-----HSRAFIVEVMGRHCGWLGLLAGLAT 390
Query: 284 HPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVILIPEGLID 333
+ +I E K + + D + DI+ K G ++++ EG I
Sbjct: 391 SADYILIPE----KPASSREWQDQMCDIVGKHRARGKRKTIVIVAEGAIS 436
Score = 102 bits (257), Expect = 5e-23
Identities = 46/293 (15%), Positives = 96/293 (32%), Gaps = 37/293 (12%)
Query: 78 CDPKACSMENKSLKIGVVLSGGQAPGGHNVI-----SGIFDYLQERTNGSKLYGFKGGPA 132
K KI ++ G A G ++ + + G Y G +
Sbjct: 560 DHVPPSLPLEKRKKIAIINVGAPAGGMNSAVYSMATYCMS-------RGHVPYAIHNGFS 612
Query: 133 GIMKCKYV-ELSTEYIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVIG 191
G+ + + V ++ I + + GG I + R +K DGL+++G
Sbjct: 613 GLARHESVRSINWLDIEGWGSLGG-SEIGTNRTL-PNDADIGMIAYFFEKYGFDGLILVG 670
Query: 192 GDDSNTNACLLAEN-FRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGN 250
G ++ + L ++ ++ P TI ++ E S G DT N
Sbjct: 671 GFEAFISLHQLERARINYPSLRIPLVLIPATISNNVPGTEY--SLGSDTCL--------N 720
Query: 251 VMTDA----RSTGKYYH----FVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLK 302
+ + + V + G + +I L I+ + EE + Q
Sbjct: 721 SFMEYCDVIKQSAAATRNRVFVVEVQGGNSGYIATHAQLACGAQISYVPEEGISLAQLEM 780
Query: 303 NVTDYITDIICKRSEAGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDGVD 355
++ + + + + +IL E + ++I+ + + A D
Sbjct: 781 DI-NSLKESFANDQGKTKSGRLILKSENASKVLTT--EVISTIIDDEASGRFD 830
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 78.0 bits (191), Expect = 4e-15
Identities = 84/560 (15%), Positives = 160/560 (28%), Gaps = 136/560 (24%)
Query: 13 GPGRLASVYSELQTSRLNVSLPLPSVLKKTFNVVDGAPSSASGNPEEIKKLFPKLFG-QP 71
P + +Y E Q RL V K +NV + KL L +P
Sbjct: 104 QPSMMTRMYIE-QRDRLYND---NQVFAK-YNVS---------RLQPYLKLRQALLELRP 149
Query: 72 SARLVECDPKACSMENKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLY----GF 127
+ ++ K+ + + Y + K++
Sbjct: 150 AKNVLIDGVLGSG---KT-----WV----------ALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 128 KGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGL 187
P +++ +L + + ++ D + + +I + + + +K + + L
Sbjct: 192 CNSPETVLE-MLQKLLYQIDPNWTSRS--DHSSNIKLRIHSIQAELRRLLKSKPYE-NCL 247
Query: 188 VVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEM 247
+V+ + A N K + T T K+V T I +
Sbjct: 248 LVL--LNVQNAKAWNAFNLSCKILLT-------TRF-----KQVTDFLSAATTTHISLDH 293
Query: 248 IGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHP-NITIIGEEVAAKKQTLKNVTD 306
+T ++ + + E L T+P ++II E + T N
Sbjct: 294 HSMTLTPDEVKSL---LLKYLDCRPQDLPRE-VLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 307 YITDIICKRSEAGYNYGVILIPEGL----IDF--------IPEVQQLIAELNEILAHDGV 354
D + E+ N L P IP L+ ++
Sbjct: 350 VNCDKLTTIIESSLNV---LEPAEYRKMFDRLSVFPPSAHIPT--ILL----SLI----- 395
Query: 355 DQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDP-------HGNVQVAKIETEKMLIQM 407
W +KS + K L+E+ P K++ E
Sbjct: 396 -----WFDVIKSDVMVVVNKLHK----YSLVEKQPKESTISIPSIYLELKVKLEN----- 441
Query: 408 VETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDANYCYA-LGYAAAALLHAGKTG 466
E L++ Y ++ +P D Y Y+ +G+ + H +
Sbjct: 442 -EYALHR-SIVDHYNIP-------KTFDSDDLIPPYLD-QYFYSHIGHHLKNIEHPERMT 491
Query: 467 LISSV--------GNLGEPVEEWTVGGTALTSLMDVERRHGKFKPVIKKAMVELEGI--P 516
L V + W G+ L +L ++ +KP I + E +
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK----FYKPYICDNDPKYERLVNA 547
Query: 517 FKTFASLREDWTIKNLYVSP 536
F E+ NL S
Sbjct: 548 ILDFLPKIEE----NLICSK 563
Score = 44.1 bits (103), Expect = 1e-04
Identities = 36/241 (14%), Positives = 77/241 (31%), Gaps = 54/241 (22%)
Query: 225 DLKCKEVPTSF--GF--DTACKIFSEMIGNVMTDA----------RSTGKYYHFVRLMGR 270
+ K++ + F F + CK +M ++++ +G F L+ +
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 271 AASHIT--LECALQTHPNITIIGEEVAAK-KQTLKNVTDYITDIICKRSEAGYNYGVILI 327
+ +E L+ N + + + +Q YI +R YN +
Sbjct: 75 QEEMVQKFVEEVLR--INYKFLMSPIKTEQRQPSMMTRMYIE----QRDRL-YNDNQVFA 127
Query: 328 PEGLIDFIP---EVQQLIAELNEILAHDGVDQDG---AWKKKLKS---QSQELFELFPKA 378
+ +L L E+ V DG + K + S ++
Sbjct: 128 K----YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 379 I-----------------QEQLLLERDPHGNVQVAKIETEKMLIQMVETELNKMKQKGAY 421
I ++LL + DP+ + K+ I ++ EL ++ + Y
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 422 K 422
+
Sbjct: 244 E 244
Score = 43.7 bits (102), Expect = 1e-04
Identities = 45/342 (13%), Positives = 86/342 (25%), Gaps = 140/342 (40%)
Query: 11 KDGPGRLASVYSELQTSRLNVSLPLPSVLKKTFNVVDGAPSSASGNPEEIKKLFPKL--F 68
+DG + + + +L ++++ + NV++ P E +K+F +L F
Sbjct: 338 RDGLATWDN-WKHVNCDKLT------TIIESSLNVLE---------PAEYRKMFDRLSVF 381
Query: 69 GQ----PSARLV---------ECDPKACSMENKSLKIGVVLSGGQAPGGHNVISGIFDYL 115
P+ L + + SL + ++ S +
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL-----VEKQPKESTISIPSIYLELK 436
Query: 116 QERTNGSKL-------YGFKGGPAGIMKCKY------VELSTEYIYPYRNQGGFDMICSG 162
+ N L Y + +Y Y + G +
Sbjct: 437 VKLENEYALHRSIVDHYNI--------PKTFDSDDLIPPYLDQYFYSHI---GHHL---- 481
Query: 163 RDKIETPEQFKQAEETA--KKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPK 220
IE E + + LD FR + K R
Sbjct: 482 -KNIE------HPERMTLFRMVFLD--------------------FRFLEQKIRHDSTAW 514
Query: 221 TIDG-------DLK------CKEVPTSFGFDTACKIFSEMIGNVMTDARSTGKYYHFVRL 267
G LK C P + ++ ++ F+
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPK----------YERLVNAIL----------DFLP- 553
Query: 268 MGRAASHIT-------LECALQTHPNITIIGEEVAAKKQTLK 302
+ ++ L AL + I E A KQ +
Sbjct: 554 --KIEENLICSKYTDLLRIALM-AEDEAIFEE---AHKQVQR 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.8 bits (121), Expect = 1e-06
Identities = 102/631 (16%), Positives = 179/631 (28%), Gaps = 230/631 (36%)
Query: 24 LQTSRLNVSLPLP-------SVLKKTFNVVDGAPSSASGNPEEIK---KLFPKLFGQPSA 73
L L L +P S L++ FN + P+ +E +L K G +
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY-VS 69
Query: 74 RLVECDPKACSMENKSLKIGV------VLSGGQAPGGHNVISGIFDYLQERTNGSKLYGF 127
LVE P ++ L + + L G H + + + + T K
Sbjct: 70 SLVE--PSKVGQFDQVLNLCLTEFENCYLEGNDI---HALAAKLLQ--ENDTTLVKTK-- 120
Query: 128 KGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICSGR--DKIETPEQFKQAEETAKKLDLD 185
++K Y+ I + R DK F+ E +L
Sbjct: 121 -----ELIKN-YITAR---------------IMAKRPFDKKSNSALFRAVGEGNAQL--- 156
Query: 186 GLVVIGGDDSNTNACL--LAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKI 243
+ + GG NT+ L + +++ + GDL + +
Sbjct: 157 -VAIFGG-QGNTDDYFEELRDLYQT----------YHVLVGDL----------IKFSAET 194
Query: 244 FSEMIGNVMTDARSTGKYYHFVRLM---GRAASHITLECALQTHPNITIIGEEVAAKKQT 300
SE+I + + + + + + L + P I +I Q
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI--------Q- 245
Query: 301 LKNVTDYITDIICKRSEAGYNY--------GVILIPEGLI------------DFIPEVQQ 340
L + Y+ + K G+ G +GL+ F V++
Sbjct: 246 LAH---YV--VTAKLL--GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK 298
Query: 341 LIAELNEILAHDGVDQDGAWKKKLKSQSQELF---ELFPKAIQEQLLLERDPHGNVQVAK 397
I +L GV + E + L P +++ L +
Sbjct: 299 AI----TVLFFIGV------------RCYEAYPNTSLPPSILEDSL-----ENN------ 331
Query: 398 IETEK--ML------IQMVETELNKMKQKGAYKGQ-----FNGQSHFFGYEGRCGLPTNF 444
E ML + V+ +NK Q NG + G P
Sbjct: 332 -EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV----VSGPPQ-- 384
Query: 445 DANYCYALGYAAAALLHAGK--TGLISS----------VGNLGEPVEEWTVGGTAL--TS 490
+L Y L K +GL S N PV + +
Sbjct: 385 ------SL-YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV-------ASPFHSH 430
Query: 491 LM---------DVERRHGKFKPVIKKAMVELEGIP-FKTF--ASLRE----------DWT 528
L+ D+ + + F ++ IP + TF + LR D
Sbjct: 431 LLVPASDLINKDLVKNNVSFNA------KDI-QIPVYDTFDGSDLRVLSGSISERIVDCI 483
Query: 529 IKNLYVSPGPIQFVGPNANDINHTLKLELGP 559
I+ P+++ T L+ GP
Sbjct: 484 IRL------PVKW--ETTTQFKATHILDFGP 506
Score = 32.3 bits (73), Expect = 0.58
Identities = 43/241 (17%), Positives = 71/241 (29%), Gaps = 87/241 (36%)
Query: 6 APTVKKD-------GPGRLASV----YSELQT--SRLNVSLPLPSVL-------KKTFNV 45
P++ +D P + S+ ++Q ++ N LP + K V
Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL-V 378
Query: 46 VDGAPSS------------ASGNPEEIKKLF----PKL---FG-----------QPSARL 75
V G P S A ++ + F K F P++ L
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 76 VECD--PKACSMENKSLKI-------GVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYG 126
+ D S K ++I G L ++ I +
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII---RLPVKWETTTQ 495
Query: 127 FK---------GGPAGIMKCKYVELSTEYIYPYRN-QG-GFDMICSG-RDKIETPEQ-FK 173
FK GG +G+ L+ +RN G G +I +G D + FK
Sbjct: 496 FKATHILDFGPGGASGLGV-----LT------HRNKDGTGVRVIVAGTLDINPDDDYGFK 544
Query: 174 Q 174
Q
Sbjct: 545 Q 545
Score = 31.2 bits (70), Expect = 1.3
Identities = 34/181 (18%), Positives = 54/181 (29%), Gaps = 61/181 (33%)
Query: 366 SQSQ----ELFELFPKAIQEQLLLER-DPHGNVQVAKIETEKMLIQMVETELNKMKQKGA 420
SQ Q +L++ A Q + R D H + +++ +N
Sbjct: 1626 SQEQGMGMDLYKTSKAA---QDVWNRADNH--------FKDTYGFSILDIVINNPVNLTI 1674
Query: 421 YKGQFNGQSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGNLGEPVEE 480
HF G +G+ + N+ A+ + GK + E
Sbjct: 1675 ---------HFGGEKGK-RIRENYS-----AMIFETIV---DGKLKTEKIFKEINEHSTS 1716
Query: 481 WTVGG-------TALTS--LMDVERRHGKFKPVIKKAMVEL---EGI--PFKTFA--SLR 524
+T T T L +E KA E +G+ TFA SL
Sbjct: 1717 YTFRSEKGLLSATQFTQPALTLME-----------KAAFEDLKSKGLIPADATFAGHSLG 1765
Query: 525 E 525
E
Sbjct: 1766 E 1766
Score = 30.0 bits (67), Expect = 2.6
Identities = 17/119 (14%), Positives = 31/119 (26%), Gaps = 36/119 (30%)
Query: 37 SVLKKTFNVVDGAPSSASG---------NPEEIKKLFPKLFGQPSARLVECDPKACSMEN 87
+ +N D G NP + F G+ R+ E
Sbjct: 1640 KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFG---GEKGKRIRENYSA------ 1690
Query: 88 KSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEY 146
+ G IF + E + Y F+ G++ +T++
Sbjct: 1691 --------MIFETIVDGKLKTEKIFKEINEHSTS---YTFR-SEKGLLS------ATQF 1731
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.27
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 13/35 (37%)
Query: 58 EEIKKLFP--KLFGQPSARLVECDP----KACSME 86
+ +KKL KL+ SA P KA +ME
Sbjct: 20 QALKKLQASLKLYADDSA------PALAIKA-TME 47
Score = 27.6 bits (60), Expect = 6.8
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 13/34 (38%)
Query: 23 ELQT-SRLNVSLPL--PSVLKKTFNVVDGAPSSA 53
E Q +L SL L D AP+ A
Sbjct: 18 EKQALKKLQASLKLYAD----------DSAPALA 41
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.6 bits (71), Expect = 0.43
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 8/35 (22%)
Query: 304 VTDYIT-DIICKRSEAGYNYGVILIPEGLIDFIPE 337
V + D++C G++ + + L+D E
Sbjct: 35 VERFSEGDVVCALC------GLV-LSDKLVDTRSE 62
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI,
infectious disease, LYME DI non-hodgkin lymphomas,
neuroborreliosis; 2.20A {Borrelia burgdorferi}
Length = 289
Score = 32.0 bits (73), Expect = 0.48
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 280 ALQTHPNITIIGEEVAAKKQTLKNVTDYITDII 312
ALQ H N I+ ++ A + + V +Y DI
Sbjct: 249 ALQLHKNAIIVSDKNATYELKVGTV-EYFNDIE 280
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme,
conformational disorder, conformational differences,
hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP:
c.124.1.1
Length = 289
Score = 31.2 bits (71), Expect = 0.76
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 280 ALQTHPNITIIGEEVAAKKQTLKNVTDYITDII 312
A Q HP + +E A + +K V Y ++
Sbjct: 228 AFQQHPRTVFVCDEDATLELKVKTV-KYFKGLM 259
>1uze_A Angiotensin converting enzyme; metalloprotease, inhibitor,
enalaprilat, zinc dependant peptidase, anti-hypertensive
drug; HET: EAL; 1.82A {Homo sapiens} SCOP: d.92.1.5 PDB:
1o8a_A* 1o86_A* 1uzf_A* 2oc2_A* 2ydm_A* 2iux_A* 2iul_A*
2xy9_A* 3bkk_A* 3bkl_A* 3l3n_A*
Length = 589
Score = 31.3 bits (70), Expect = 1.0
Identities = 30/148 (20%), Positives = 56/148 (37%), Gaps = 26/148 (17%)
Query: 145 EYIYPYRNQGGFDMICSGRDKIETPEQ-FKQAEETAKKLDLDGL--------VVIGGDDS 195
+ + P+ + D + + TP + FK+A++ L L + ++ D
Sbjct: 252 DLVVPFPSAPSMDTTEAMLKQGWTPRRMFKEADDFFTSLGLLPVPPEFWNKSMLEKPTDG 311
Query: 196 NTNACL-LAENFRSKDMKTRVIGCPKTIDGDLK--------------CKEVPTSFGFDTA 240
C A +F + R+ C DL K++P + + A
Sbjct: 312 REVVCHASAWDFYNGK-DFRIKQCTTVNLEDLVVAHHEMGHIQYFMQYKDLPVAL-REGA 369
Query: 241 CKIFSEMIGNVMTDARSTGKYYHFVRLM 268
F E IG+V+ + ST K+ H + L+
Sbjct: 370 NPGFHEAIGDVLALSVSTPKHLHSLNLL 397
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic
effects, aldose-ketose isomerase multiple conformers,
isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP:
c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A
1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Length = 266
Score = 30.0 bits (68), Expect = 1.6
Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 280 ALQTHPNITIIGEEVAAKKQTLKNVTDYITDI 311
LQ HP ++ +E + + +K + Y ++
Sbjct: 228 CLQLHPKAIMVCDEPSTMELKVKTL-RYFNEL 258
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus
stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Length = 413
Score = 30.1 bits (67), Expect = 2.0
Identities = 9/68 (13%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 56 NPEEIKKLFPKLFGQPS-ARLVECDP-KACSMENKSLKIGVVL---SGGQAPGGHNVISG 110
E +K ++ + E P A + K ++ +++ + GG +
Sbjct: 11 RNEYVKNVYKNTVSNFIETSIPEITPFNARTSSIKGKRLNLLVPSINQEHMFGGISTALK 70
Query: 111 IFDYLQER 118
+F+ +
Sbjct: 71 LFEQFDNK 78
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of
PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
SCOP: c.79.1.1 PDB: 1m54_A*
Length = 435
Score = 29.6 bits (67), Expect = 2.8
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 11/83 (13%)
Query: 108 ISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQG-GFDMICSGRD-- 164
I+GI L+E+ G ++ G P G + + EL+ Y +G G+D I + D
Sbjct: 283 ITGIARKLKEKCPGCRIIGVD--PEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRT 340
Query: 165 ------KIETPEQFKQAEETAKK 181
K E F A +
Sbjct: 341 VVDKWFKSNDEEAFTFARMLIAQ 363
>3kta_B Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xew_Y 1xex_B*
Length = 173
Score = 28.8 bits (65), Expect = 3.4
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 10/44 (22%)
Query: 37 SVLKKTFNVVDGAPSSASGNPEEIKKLFPKLFGQPSARLVECDP 80
+V +TF + ++F KL SARL+ +P
Sbjct: 7 NVFMRTFEAIS----------RNFSEIFAKLSPGGSARLILENP 40
>4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B
2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B
Length = 1131
Score = 29.1 bits (65), Expect = 4.9
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 15/95 (15%)
Query: 102 PGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQGGFDMICS 161
P G+N I + + G+ + IM VE +R ++
Sbjct: 720 PAGNNAILAVISF----------TGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKYP 769
Query: 162 G--RDKIETPEQFKQ---AEETAKKLDLDGLVVIG 191
G DKI PE + +E + L+ +G+V
Sbjct: 770 GGQEDKIVMPEPGVRGYKGKEYYRLLEDNGVVSPE 804
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 28.8 bits (65), Expect = 5.0
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 108 ISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPYRNQG-GFDMI 159
ISGI ++E+ ++ G P G + + EL+ + Y +G G+D
Sbjct: 235 ISGIGRKIKEQVPSCQIVGVD--PYGSILARPAELNKTDVQFYEVEGIGYDFP 285
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 5.2
Identities = 27/148 (18%), Positives = 49/148 (33%), Gaps = 47/148 (31%)
Query: 347 EILAHDGV--------DQDGAWKKKLKSQSQEL------FELFPKAIQEQLLLERDPHG- 391
IL H G+ + +KK Q + FE K EQ + HG
Sbjct: 897 SILEHSGIRLIEPELFNGY-NPEKKEMIQEVIVEEDLEPFEA-SKETAEQF---KHQHGD 951
Query: 392 NVQVAKI-ETEKMLIQMVETELNKMKQKGAYKGQFNGQSHFFGYEGRCGLPTNFDA-NYC 449
V + +I ET + +++++ + + + GQ +PT ++A Y
Sbjct: 952 KVDIFEIPETGEYSVKLLKGATLYIPKALRFDRLVAGQ-----------IPTGWNAKTYG 1000
Query: 450 --------------YALGYAAAALLHAG 463
+ L A + +G
Sbjct: 1001 ISDDIISQVDPITLFVLVSVVEAFIASG 1028
>2oh1_A Acetyltransferase, GNAT family; YP_013287.1, structural genom joint
center for structural genomics, JCSG, protein structu
initiative; HET: MSE UNL; 1.46A {Listeria monocytogenes
str}
Length = 179
Score = 28.3 bits (63), Expect = 5.4
Identities = 7/39 (17%), Positives = 11/39 (28%), Gaps = 3/39 (7%)
Query: 335 IPEVQQLIAELNEILAHDGVDQDGAWKKKLKSQSQELFE 373
++ L+ + L G Q W L E
Sbjct: 24 RLKINDLMIDTARWLKESGSTQ---WSDILHGFDVHNIE 59
>2p9x_A Hypothetical protein PH0832; pyrococcus horikoshii OT3, NPPSFA,
national project on prote structural and functional
analyses; 1.65A {Pyrococcus horikoshii}
Length = 99
Score = 27.1 bits (59), Expect = 5.5
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 31 VSLPLPSVLKKTFNV-VDGAPSSASGNPEEIKKLFPKLFGQPSARLVE 77
V+ L +VL+ ++ A +P++ K+ KLFG+ SARL+E
Sbjct: 19 VAPGLEAVLEAHLRATLNSGIELAYDDPQKFKEAVSKLFGEYSARLLE 66
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship,
oxidation-reduct umpolung, thiamine diphosphate,
reaction intermediate; HET: TDM FAD GOL; 1.09A
{Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A*
2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Length = 603
Score = 28.7 bits (65), Expect = 5.7
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 165 KIETPEQFKQAEETAKKLDLDGLVVI 190
++ EQ E AK + V+I
Sbjct: 515 RVNKIEQLPDVFEQAKAIAQHEPVLI 540
>1jp4_A 3'(2'),5'-bisphosphate nucleotidase; protein-product complex, sugar
nucleotidase fold, hydrolase; HET: AMP; 1.69A {Rattus
norvegicus} SCOP: e.7.1.1 PDB: 2wef_A*
Length = 308
Score = 28.2 bits (63), Expect = 6.9
Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 20/99 (20%)
Query: 270 RAASHITLECALQTH-PNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVILIP 328
R +L P +TIIGEE + + + + + Y I
Sbjct: 52 RMVQMSICS-SLSRKFPKLTIIGEEDLPPGEVDQELIEDGQSEEILKQPCPSQYSAIKEE 110
Query: 329 EG--LID-------FI----PEVQQLIAELNEILAHDGV 354
+ +D + V LI +A++G
Sbjct: 111 DLVVWVDPVDGTKEYTEGLLDNVTVLIG-----IAYEGK 144
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.398
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,752,198
Number of extensions: 554089
Number of successful extensions: 1347
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1267
Number of HSP's successfully gapped: 52
Length of query: 567
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 468
Effective length of database: 3,937,614
Effective search space: 1842803352
Effective search space used: 1842803352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)