RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 042388
(567 letters)
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent
phosphofructokinase {Lyme disease spirochete (Borrelia
burgdorferi) [TaxId: 139]}
Length = 550
Score = 541 bits (1394), Expect = 0.0
Identities = 262/552 (47%), Positives = 363/552 (65%), Gaps = 18/552 (3%)
Query: 22 SELQTSRLNVSLPLPSVLKKTFN---VVDGAPSSASGNPEEIKKLFPKLFGQPSARLVEC 78
S + R LP++LKK FN +V G + A + + +K+ F +G P E
Sbjct: 1 SLFKQERQKYIPKLPNILKKDFNNISLVYGENTEAIQDRQALKEFFKNTYGLPIISFTEG 60
Query: 79 DPKACSMENKSLKIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCK 138
+ +K+L IG++LSGG APGGHNVISG+FD +++ SKL+GFKGGP G+++
Sbjct: 61 ESSL--SFSKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLEND 118
Query: 139 YVELSTEYIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTN 198
+EL+ I YRN GGFD++ SGR KIET E + +A AK+ +L+ +++IGGDDSNTN
Sbjct: 119 KIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTN 178
Query: 199 ACLLAENFRSKDMKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDARST 258
A +LAE F+ +VIG PKTID DL+ + SFGFD+A KI+SE+IGN+ DA ST
Sbjct: 179 AAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMST 238
Query: 259 GKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEA 318
KY+HFV+LMGR+ASH+ LECAL+THPNI I+ EEV AKK+TL + D + +I KRS
Sbjct: 239 KKYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLN 298
Query: 319 GYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDGVDQDG--------AWKKKLKSQSQE 370
G N+GV+++PEGLI+FIPEV+ L+ EL +I + + G + KL +
Sbjct: 299 GDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKG 358
Query: 371 LFELFPKAIQEQLL---LERDPHGNVQVAKIETEKMLIQMVETELNKMKQKGAYKGQFNG 427
++ P IQ +L+ LERDPHGN V+++ TEK+ I+M+++ LN MK++G YKG F
Sbjct: 359 VYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKGSFTP 418
Query: 428 QSHFFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGNLGEPVEEWTVGGTA 487
HFFGYEGR P+NFD++YCY+LGY A L+ G TG +S + NL +W GG
Sbjct: 419 VDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWIAGGVP 478
Query: 488 LTSLMDVERRHGKFKPVIKKAMVELEGIPFKTFASLREDWTIKNLYVSPGPIQFVGP--N 545
LT LM++E R+G+ KPVIKKA+V+LEG PFK F R+ W + NLY+ PGP+Q+ G
Sbjct: 479 LTMLMNMEERYGEKKPVIKKALVDLEGRPFKEFVKNRDKWALNNLYLYPGPVQYFGSSEI 538
Query: 546 ANDINHTLKLEL 557
++I TLKLEL
Sbjct: 539 VDEITETLKLEL 550
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase
{Escherichia coli [TaxId: 562]}
Length = 320
Score = 154 bits (391), Expect = 3e-43
Identities = 66/257 (25%), Positives = 103/257 (40%), Gaps = 19/257 (7%)
Query: 91 KIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPY 150
KIGV+ SGG APG + I G+ T G ++ G G G+ + + V+L +
Sbjct: 4 KIGVLTSGGDAPGMNAAIRGVVRSA--LTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDM 61
Query: 151 RNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKD 210
N+GG + + + A E KK +D LVVIGGD S A R +
Sbjct: 62 INRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAM------RLTE 115
Query: 211 MKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDARSTGKYYHFVRLMGR 270
M IG P TID D+K + + GF TA E I + + S + V +MGR
Sbjct: 116 MGFPCIGLPGTIDNDIKGTD--YTIGFFTALSTVVEAIDRLRDTSSSH-QRISVVEVMGR 172
Query: 271 AASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVILIPEG 330
+TL A+ ++ ++ + + + I G + ++ I E
Sbjct: 173 YCGDLTLAAAIAGGCEFVVV--------PEVEFSREDLVNEIKAGIAKGKKHAIVAITEH 224
Query: 331 LIDFIPEVQQLIAELNE 347
+ D + E
Sbjct: 225 MCDVDELAHFIEKETGR 241
Score = 39.3 bits (91), Expect = 0.001
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 432 FGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGN 473
G+ R G P +D +G A LL AG G + N
Sbjct: 248 LGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGRCVGIQN 289
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 319
Score = 152 bits (384), Expect = 2e-42
Identities = 63/256 (24%), Positives = 107/256 (41%), Gaps = 19/256 (7%)
Query: 91 KIGVVLSGGQAPGGHNVISGIFDYLQERTNGSKLYGFKGGPAGIMKCKYVELSTEYIYPY 150
+IGV+ SGG +PG + I + +G ++YG G AG++ +L +
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVRKA--IYHGVEVYGVYHGYAGLIAGNIKKLEVGDVGDI 60
Query: 151 RNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKD 210
++GG + + + +T E K+ E KK + GLVVIGGD S A L +
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKL------TE 114
Query: 211 MKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIFSEMIGNVMTDARSTGKYYHFVRLMGR 270
+G P TID D + GFDTA + I + D ++ + + + +MGR
Sbjct: 115 HGFPCVGVPGTIDND--IPGTDFTIGFDTALNTVIDAIDKIR-DTATSHERTYVIEVMGR 171
Query: 271 AASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYITDIICKRSEAGYNYGVILIPEG 330
A I L L +I E + + + + E G + +I++ EG
Sbjct: 172 HAGDIALWSGLAGGAETILIPEA--------DYDMNDVIARLKRGHERGKKHSIIIVAEG 223
Query: 331 LIDFIPEVQQLIAELN 346
+ + +Q+
Sbjct: 224 VGSGVDFGRQIQEATG 239
Score = 36.6 bits (84), Expect = 0.006
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 432 FGYEGRCGLPTNFDANYCYALGYAAAALLHAGKTGLISSVGN 473
G+ R G PT FD LG A LL GK G + N
Sbjct: 247 LGHVQRGGSPTAFDRVLASRLGARAVELLLEGKGGRCVGIQN 288
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 295
Score = 31.1 bits (69), Expect = 0.35
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 370 ELF--ELFPKAIQEQLLLERDPHGNVQVAKIETEKMLIQMVETELNKMKQKGA 420
+L+ +FPK + + +D E +K L Q E N ++
Sbjct: 13 DLYPNGVFPKGQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDFREAAE 65
>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 95
Score = 29.0 bits (65), Expect = 0.41
Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 357 DGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIETEKMLIQMVETE--LNK 414
D L+S + E FP+ ++ +L+ +G + + +I +ML+ ++ L+
Sbjct: 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSV 74
Query: 415 MKQKG 419
+ G
Sbjct: 75 LDVDG 79
>d1nqka_ c.1.16.4 (A:) Alkanesulfonate monooxygenase SsuD
{Escherichia coli [TaxId: 562]}
Length = 362
Score = 29.2 bits (64), Expect = 1.3
Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 10/117 (8%)
Query: 238 DTACKIFSEMIGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPN-ITIIGEEVAA 296
A ++ S + + A++ V AA H L+ PN +G
Sbjct: 241 QAAERLISHLDDETIAKAQAAFARTDSVGQQRMAALHNGKRDNLEISPNLWAGVGLVRGG 300
Query: 297 KKQTLKNVTDYITDIICKRSEAGYNYGVILI----PEGLIDF----IPEVQQLIAEL 345
L + I + + G + +L E P + I E+
Sbjct: 301 AGTALVGDGPTVAARINEYAALGID-SFVLSGYPHLEEAYRVGELLFPLLDVAIPEI 356
>d1ze3h1 b.2.3.2 (H:159-279) Mannose-specific adhesin FimH
{Escherichia coli [TaxId: 562]}
Length = 121
Score = 27.6 bits (61), Expect = 2.0
Identities = 7/38 (18%), Positives = 11/38 (28%)
Query: 269 GRAASHITLECALQTHPNITIIGEEVAAKKQTLKNVTD 306
G +T+ CA + + G A N
Sbjct: 19 GSVPIPLTVYCAKSQNLGYYLSGTTADAGNSIFTNTAS 56
>d1fsfa_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase
NagB {Escherichia coli [TaxId: 562]}
Length = 266
Score = 28.2 bits (62), Expect = 2.3
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 279 CALQTHPNITIIGEEVAAKKQTLKNVTDYITDI 311
LQ HP ++ +E + + +K + Y ++
Sbjct: 227 SCLQLHPKAIMVCDEPSTMELKVKTL-RYFNEL 258
>d1ne7a_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase
NagB {Human (Homo sapiens) [TaxId: 9606]}
Length = 281
Score = 28.2 bits (62), Expect = 2.4
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 280 ALQTHPNITIIGEEVAAKKQTLKNVTDYITDII 312
A Q HP + +E A + +K V Y ++
Sbjct: 228 AFQQHPRTVFVCDEDATLELKVKTV-KYFKGLM 259
>d1fx2a_ d.58.29.1 (A:) Receptor-type monomeric adenylyl cyclase
{Trypanosome (Trypanosoma brucei), different isoform
[TaxId: 5691]}
Length = 235
Score = 28.0 bits (61), Expect = 2.8
Identities = 39/241 (16%), Positives = 65/241 (26%), Gaps = 23/241 (9%)
Query: 295 AAKKQTLKNVTDYITDII--CKRSEAGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHD 352
A K+ VT TDI A P+ + D + +++ L I +
Sbjct: 4 RAPKEPTDPVTLIFTDIESSTALWAA--------HPDLMPDAVAAHHRMVRSL--IGRYK 53
Query: 353 G-VDQDGAWKKKLKSQSQELFELFPKAIQEQLLLERDPHGNVQVAKIETEKMLIQMVETE 411
+ + S+S + +Q L + + E E+ +
Sbjct: 54 CYEVKTVGDSFMIASKSPFAAVQLAQELQLCFLHHDWGTNALDDSYREFEEQRAEGECEY 113
Query: 412 LNKMKQKGAYKGQFNGQSH------FFGYEGRCGLPTNFDANYCYALGYAAAALLHAGKT 465
G +Y AA
Sbjct: 114 TPPTAHMDPEVYSRLWNGLRVRVGIHTGLCDIRHDEVTKGYDYYGRTPNMAARTESVANG 173
Query: 466 GLISSVGNLGEPVEEWTVGGTALTSLMDVERRHGKFKPVIKKAMVELEGIPFKTFASLRE 525
G + + +T+L DV R G PV M +L +P + FA+LR
Sbjct: 174 GQVLMTHAAYMSLSAEDRKQIDVTALGDVALR-GVSDPV---KMYQLNTVPSRNFAALRL 229
Query: 526 D 526
D
Sbjct: 230 D 230
>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate
carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 363
Score = 27.5 bits (61), Expect = 4.1
Identities = 7/50 (14%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 343 AELNEILAHDGVDQDGAWKKKLKSQSQELFELF----PKAIQEQLLLERD 388
+ E+ + + ++ W K+++ + L + P I+ ++L +
Sbjct: 313 INMMELFS---ISKE-FWDKEVEDIEKYLVDQVNADLPCEIEREILALKQ 358
>d1xtta1 c.61.1.1 (A:2-216) Uracil PRTase, Upp {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 215
Score = 26.5 bits (58), Expect = 8.7
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 4/76 (5%)
Query: 219 PKTIDGDLKCKEVPTSFGFDTACKIFSEMIGN----VMTDARSTGKYYHFVRLMGRAASH 274
PK +D + K++P I MI + + ++ +S
Sbjct: 113 PKDMDVYIYYKKIPDIRAKVDNVIIADPMIATASTMLKVLEEVVKANPKRIYIVSIISSE 172
Query: 275 ITLECALQTHPNITII 290
+ L +P I +
Sbjct: 173 YGVNKILSKYPFIYLF 188
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.135 0.398
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,124,780
Number of extensions: 103744
Number of successful extensions: 296
Number of sequences better than 10.0: 1
Number of HSP's gapped: 286
Number of HSP's successfully gapped: 16
Length of query: 567
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 477
Effective length of database: 1,171,896
Effective search space: 558994392
Effective search space used: 558994392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.4 bits)