BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042390
(626 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FXI5|IQD32_ARATH Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana GN=IQD32 PE=1 SV=3
Length = 794
Score = 272 bits (695), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 229/597 (38%), Positives = 317/597 (53%), Gaps = 102/597 (17%)
Query: 27 EFPTPVEPKTSET----IIETDAD---DSPLDESVVIVIQAAVRGILAQRELLKLKNVVK 79
E + VEP+ SE+ I+ ++D D LDESV++VIQAAVRG LA+RELL+ K V+K
Sbjct: 183 EMASKVEPEESESDDVIIVRKESDEKVDEKLDESVIVVIQAAVRGFLARRELLRSKKVIK 242
Query: 80 LQAAVRGHLVRRHAVGTLRCVQAIVKMQTLVRARYARLGKEPDWKAEKDTCNSVTSKGNL 139
LQAAVRGHLVR A+G+LRCVQAIVKMQ +VRAR++ KD S S +
Sbjct: 243 LQAAVRGHLVRSQAMGSLRCVQAIVKMQAMVRARHST----------KD--GSRVSATSD 290
Query: 140 VTKPNATRTSIQNLLSNRFARQLMESTPKNKPIHIKCDPAKQDSAWNWLERWMPVSSAKQ 199
++PNA + Q LL N+FA+ LMESTPK KPI+IKCDP K SAWNWLERWM V ++
Sbjct: 291 KSEPNA---AAQKLLENKFAKHLMESTPKTKPINIKCDPTKPSSAWNWLERWMSVPKPEK 347
Query: 200 TLEPGSKIEHSENGKNENFASPVETKIPSEVLCDSADSKSRIRETDVLSKIEENLITHDA 259
T + E +N KI + ++DS V +K E ++ +++A
Sbjct: 348 TSKANLTTEE------QNLEETQNVKISPQADFVNSDST-------VENKTETDMPSYEA 394
Query: 260 DKFNFQQSQPTSVGDDLELSEPENNGTSDVNEISIET--DSHQSQIVQSDAPSQQELKSL 317
K G ++ELSE E D E S E DS QSQ P + SL
Sbjct: 395 SKVE---------GQNVELSETEKMSQYDSPEASAEVYYDSIQSQ------PLAAKPDSL 439
Query: 318 SNKPEMESEPPKRSMKRFASEDLETEGKKFVFGSRKASNPAFVVAHSKFEELSSSANSGK 377
+PE K S+K RK SNP+F+ A SKFEEL+SS S K
Sbjct: 440 LEEPEYVDGQIKHSLK------------------RKVSNPSFIAAQSKFEELTSSTGSNK 481
Query: 378 SIS-SQHQDVSVDSNANNISSGANSLTRTKNLSIGENSVSRIQYGGSECGTELSISSTLD 436
+++ S DV + +I S ++ K+ S+ V+ + GSECGTELS++S+LD
Sbjct: 482 AMTLSSKDDVLGEEGKTDIDS-PDTTNTIKDHSL--EDVTPAELSGSECGTELSVTSSLD 538
Query: 437 SPDRY-EAGNTEHEHSAKVSENEI--CDPKSLNNPDVKASDASTIPTYDASHSIVGQPEK 493
+ ++ +A E AK+ E++ D L DVK DA+++ T + EK
Sbjct: 539 TLEKKSDAEGAEPRVEAKLLEDDTFKTDQAELIEIDVK--DATSMGTVEDPK------EK 590
Query: 494 VDDVRNESVNSLVVIDAAAQQKPDNSAPDFHK-EPDLQTGHQMYRSYRSSPEASPRSHIT 552
V++ ++E V +A +P S PD K + ++G Q Y S +P +T
Sbjct: 591 VENAKDE------VEISATHHEPVISTPDSKKRRAEDESGPQAY--ALSEGALTP---MT 639
Query: 553 VPESQGTPSSQV--SVKAKNNRSDKSGSYRKRKPLSASKGSPSNPSQNSGARSSTEQ 607
+ ESQ TP+SQ SVKA+ +S+KSGS +KRK SK S+P Q G +TEQ
Sbjct: 640 ITESQATPASQASSSVKARKGKSEKSGSSQKRK---VSKKITSSPKQEIGTGEATEQ 693
>sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1
Length = 587
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 81/153 (52%), Gaps = 15/153 (9%)
Query: 58 IQAAVRGILAQRELLKLKNVVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQTLVRARYAR- 116
+QAA RG LA+R LK +++LQA +RGHLVRR AV TL V IV++Q R R R
Sbjct: 119 VQAAFRGYLARRAFWALKGIIRLQALIRGHLVRRQAVATLFSVMGIVRLQAFARGREIRK 178
Query: 117 --LGKEPDWKAEKDTCNSVTSKGNLVTKPNATRTSIQNLLSNRFARQLMESTPKNKPIHI 174
+G + K C +GN + P I+ L +N FA++L+ S+PK P+H
Sbjct: 179 SDIGVQVYRK-----CRLQLLQGNKLANPTDAYLGIKKLTANAFAQKLLASSPKVLPVHA 233
Query: 175 KCDPAKQDSAWNWLER------WMPVSSAKQTL 201
D + +S WLE W PV K+T+
Sbjct: 234 -YDTSNPNSNLIWLENWSASCFWKPVPQPKKTI 265
>sp|Q9SF32|IQD1_ARATH Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1
Length = 454
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 27/165 (16%)
Query: 51 DESVVIVIQAAVRGILAQRELLKLKNVVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQTLV 110
+E+ I+IQ+ RG LA+RE ++ +L+ + G +V+R A TL+C+Q + ++Q+ +
Sbjct: 107 EEAAAILIQSTFRGHLARRESQVMRGQERLKLLMEGSVVQRQAAITLKCMQTLSRVQSQI 166
Query: 111 RARYARLGKE----------------------PDWKAEKDTCNSVTSKGNLVTKPNATRT 148
R+R R+ +E +W + V + ++ K AT
Sbjct: 167 RSRRIRMSEENQARHKQLLQKHAKELGGLKNGGNWNYSNQSKEQV--EAGMLHKYEATMR 224
Query: 149 SIQNLLSNRFARQLMESTPKN-KPIHIKCDPAKQDSAWNWLERWM 192
+ L +Q ++S K P+ + DP+ W+WLERWM
Sbjct: 225 RERALAYAFTHQQNLKSFSKTANPMFM--DPSNPTWGWSWLERWM 267
>sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1
Length = 668
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 84/169 (49%), Gaps = 32/169 (18%)
Query: 49 PLDESVVIVIQAAVRGILAQRELLKLKNVVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQT 108
P+ + IQ A RG +A++ LK +V+LQ VRG+ V+R + ++ +Q +V++Q+
Sbjct: 319 PVQHASATKIQGAFRGYMARKSFRALKGLVRLQGVVRGYSVKRQTINAMKYMQQVVRVQS 378
Query: 109 LVRARYARLGKEPDWKAEKDTCNSVTSK-GN------LVTKPNATRTSIQNL-------- 153
+++R ++ E + EKD S+ GN ++TK S +
Sbjct: 379 QIQSRRIKM-LENQAQVEKDEAKWAASEAGNDNWDDSVLTKEERDSRSQRKTDAIIKRER 437
Query: 154 -LSNRFARQLMESTPKNKPIHIKCDPAKQDSA-----WNWLERWMPVSS 196
++ ++R+L +++PK + QD+ WNW++R P++S
Sbjct: 438 SMAYAYSRKLWKNSPK----------STQDNRSFPQWWNWVDRQNPLAS 476
>sp|P62297|ASPM_SHEEP Abnormal spindle-like microcephaly-associated protein homolog
(Fragment) OS=Ovis aries GN=ASPM PE=2 SV=1
Length = 3374
Score = 43.5 bits (101), Expect = 0.005, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Query: 53 SVVIVIQAAVRGILAQRELLKLKN-VVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQTLVR 111
S VI+IQA V+G + +R+ KLK+ +K+QA R H R++ LR V+A ++Q R
Sbjct: 2829 SSVIIIQARVKGFIQKRKFRKLKDSTIKIQAVWRRHKARKY----LREVKAACRIQAWYR 2884
Query: 112 ARYAR 116
R AR
Sbjct: 2885 CRKAR 2889
Score = 41.2 bits (95), Expect = 0.024, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 53 SVVIVIQAAVRGILAQRELLK-LKNVVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQTLVR 111
S VIV+Q+A R + A+++ L L VVK+Q+ R + RR LR +A VK+Q++VR
Sbjct: 1569 SAVIVLQSACRRMQARKKFLHILTAVVKIQSYYRAYASRRK---FLRLKKATVKLQSIVR 1625
Query: 112 ARYAR 116
+ AR
Sbjct: 1626 MKQAR 1630
>sp|P62285|ASPM_BOVIN Abnormal spindle-like microcephaly-associated protein homolog
(Fragment) OS=Bos taurus GN=ASPM PE=2 SV=1
Length = 3371
Score = 42.0 bits (97), Expect = 0.015, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Query: 53 SVVIVIQAAVRGILAQRELLK-LKNVVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQTLVR 111
S VIV+Q+A R + A+++ L L ++VK+Q+ R + RR LR +A VK+Q++VR
Sbjct: 1566 SAVIVLQSACRRMQARKKFLHILTSIVKIQSYYRAYASRRK---FLRLKKATVKLQSIVR 1622
Query: 112 ARYAR 116
+ AR
Sbjct: 1623 MKLAR 1627
Score = 38.9 bits (89), Expect = 0.11, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 53 SVVIVIQAAVRGILAQRELLKLKN-VVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQTLVR 111
S VI+IQA V+G + +R+ +LK+ +K+QA R H R++ LR V+A ++Q R
Sbjct: 2826 SSVIIIQARVKGFIQKRKFRELKDSTIKIQAVWRRHKARKY----LREVKAACRIQAWYR 2881
Query: 112 ARYAR 116
AR
Sbjct: 2882 CWKAR 2886
>sp|P62288|ASPM_FELCA Abnormal spindle-like microcephaly-associated protein homolog
(Fragment) OS=Felis catus GN=ASPM PE=2 SV=1
Length = 3461
Score = 41.6 bits (96), Expect = 0.019, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Query: 53 SVVIVIQAAVRGILAQRELLK-LKNVVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQTLVR 111
S VIV+Q+A RG+ A+R+ + L +++K+Q+ R ++ R+ LR A VK+Q++V+
Sbjct: 1635 SAVIVLQSAYRGMQARRKFIHILTSIIKIQSYYRAYISRKK---FLRLKHATVKLQSIVK 1691
Query: 112 ARYAR 116
+ R
Sbjct: 1692 MKQTR 1696
Score = 38.1 bits (87), Expect = 0.22, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 53 SVVIVIQAAVRGILAQRELLKLKN-VVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQTLVR 111
S VI+IQA RG + +R+ K+K+ +K+QAA R + R++ L V+A K+Q R
Sbjct: 2912 SSVIIIQARTRGFIQKRKFQKIKDSTIKIQAAWRSYKARKY----LCKVKAACKIQAWYR 2967
Query: 112 ARYAR 116
+ AR
Sbjct: 2968 SWKAR 2972
>sp|P62286|ASPM_CANFA Abnormal spindle-like microcephaly-associated protein homolog
OS=Canis familiaris GN=ASPM PE=2 SV=2
Length = 3469
Score = 40.8 bits (94), Expect = 0.030, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Query: 53 SVVIVIQAAVRGILAQRELLK-LKNVVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQTLVR 111
S V+V+Q+A RG+ A+++ + L +++K+Q+ R ++ R+ LR A VK+Q++V+
Sbjct: 1626 SAVLVLQSAYRGMQARKKFIHILTSIIKIQSCYRAYISRKR---FLRLKNATVKLQSIVK 1682
Query: 112 ARYAR 116
R R
Sbjct: 1683 MRQTR 1687
Score = 36.2 bits (82), Expect = 0.74, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 15/77 (19%)
Query: 53 SVVIVIQAAVRGILAQRELLKLKN-VVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQTLVR 111
S +I+IQA RG + +R K+K+ +K+QA R + R++ L V+A K+Q R
Sbjct: 2903 SSIIMIQARTRGFIQKRRFQKIKDSTIKIQAVWRSYKARKY----LHQVKAACKIQAWYR 2958
Query: 112 ARYARLGKEPDWKAEKD 128
WKA KD
Sbjct: 2959 Y----------WKARKD 2965
>sp|O14188|RNG2_SCHPO Ras GTPase-activating-like protein rng2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rng2 PE=1 SV=1
Length = 1489
Score = 40.8 bits (94), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 19/108 (17%)
Query: 48 SPLDESVVIVIQAAVRGILAQRELLKL--------KNVVKLQAAVRGHL------VRRHA 93
SP+DE +V IQA RG+L + L+ + +VV LQA +RG++ +R+ A
Sbjct: 326 SPVDEKIVNAIQACGRGVLVRLRLVDMLQSLVEQSSSVVLLQAVIRGYISRNTYRIRKKA 385
Query: 94 ----VGTLRCVQAIVKMQTLVRARYARLGKEPDWKAEKDTCNSVTSKG 137
V + +Q+I + L+RA+Y ++ + + T S+ G
Sbjct: 386 YDELVNWVTSIQSISR-AYLIRAQYRKVVLQEEATKSIQTLQSIIRGG 432
>sp|Q8THL2|PYRB_METAC Aspartate carbamoyltransferase OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=pyrB
PE=3 SV=1
Length = 308
Score = 36.2 bits (82), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 210 SENGKNENFASPVETKIPSEVLCDSADSKSRIRETD----VLSKIEENLITH-------D 258
S G F SP E ++P E++ D K R++ETD ++ +E +T D
Sbjct: 177 SLYGAEMTFVSPPELRMPPEIVRDLKKQKIRVKETDSLEEIIGDVEVLYMTRVQRERFPD 236
Query: 259 ADKFNFQQSQPTSVGDDLELSEPE---NNGTSDVNEISIETDS 298
+++ +++ GD L+ ++PE + VNEI+ E D+
Sbjct: 237 PEEYEKVKNRLKVTGDLLKAADPELKVLHPLPRVNEIAPEVDA 279
>sp|Q8LPT1|AB6B_ARATH ABC transporter B family member 6 OS=Arabidopsis thaliana GN=ABCB6
PE=1 SV=2
Length = 1407
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 514 QKPDNSAPDFHKEPDLQTGHQMYRS--YRSSPEASPRSHITVPESQGTPSSQVSVKAKNN 571
Q+P S+P K P LQ GH ++RS + E SP H PE G S + V K
Sbjct: 681 QEP--SSPKMAKSPSLQRGHNVFRSQELCFNSEESPNDHSPAPEKLGENGSSLDVGEKEP 738
Query: 572 RSDKSGSYRKRKP 584
+ S+ R P
Sbjct: 739 TIKRQDSFEMRLP 751
>sp|P08964|MYO1_YEAST Myosin-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=MYO1 PE=1 SV=3
Length = 1928
Score = 35.0 bits (79), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Query: 56 IVIQAAVRGILAQRELLKLKNV-VKLQAAVRGHLVRRHAVGTLRCVQAIVKMQTLVRARY 114
+ +A V L +++ +KL N+ +KL A +RG+ VR+ L+ ++ + R Y
Sbjct: 776 LFFKAGVLADLEKQKDVKLNNIMIKLTATIRGYTVRKEITYHLQKLKKTRVIGNTFRL-Y 834
Query: 115 ARLGKEPDWKAEKDTCNSVTSKGNLVTKPN-ATRTSIQNLLSNRFARQLMESTPKNKPI 172
RL KE W N L+T N TRT N N+ L E K K +
Sbjct: 835 NRLVKEDPW------FNLFIRIKPLLTSSNDMTRTKKFNEQINKLKNDLQEMESKKKFL 887
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.122 0.338
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 227,445,859
Number of Sequences: 539616
Number of extensions: 9448702
Number of successful extensions: 31490
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 476
Number of HSP's that attempted gapping in prelim test: 30140
Number of HSP's gapped (non-prelim): 1544
length of query: 626
length of database: 191,569,459
effective HSP length: 124
effective length of query: 502
effective length of database: 124,657,075
effective search space: 62577851650
effective search space used: 62577851650
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 64 (29.3 bits)