Query 042390
Match_columns 626
No_of_seqs 232 out of 759
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 05:47:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042390.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042390hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00612 IQ: IQ calmodulin-bin 97.8 2.8E-05 6.2E-10 51.4 3.5 21 52-72 1-21 (21)
2 KOG0160 Myosin class V heavy c 97.6 0.00011 2.4E-09 85.7 7.4 67 50-120 671-738 (862)
3 KOG0160 Myosin class V heavy c 97.4 0.00032 7E-09 82.0 8.1 67 48-117 692-758 (862)
4 smart00015 IQ Short calmodulin 97.3 0.00028 6E-09 48.7 3.1 22 51-72 2-23 (26)
5 PTZ00014 myosin-A; Provisional 96.7 0.002 4.4E-08 75.4 6.0 40 54-93 779-819 (821)
6 KOG0520 Uncharacterized conser 96.6 0.0017 3.6E-08 76.8 3.6 74 47-120 805-886 (975)
7 KOG0164 Myosin class I heavy c 96.5 0.0041 8.8E-08 71.7 5.9 62 50-121 694-755 (1001)
8 PF00612 IQ: IQ calmodulin-bin 95.4 0.018 3.9E-07 38.1 3.0 19 75-93 2-20 (21)
9 KOG2128 Ras GTPase-activating 95.0 0.052 1.1E-06 66.4 7.3 75 46-120 558-642 (1401)
10 COG5022 Myosin heavy chain [Cy 94.7 0.062 1.3E-06 66.1 7.0 44 50-93 743-787 (1463)
11 smart00015 IQ Short calmodulin 93.4 0.082 1.8E-06 36.5 2.8 20 74-93 3-22 (26)
12 PTZ00014 myosin-A; Provisional 93.3 0.2 4.4E-06 59.3 7.5 40 76-118 779-818 (821)
13 KOG0520 Uncharacterized conser 87.4 0.74 1.6E-05 55.4 5.1 78 41-121 745-854 (975)
14 KOG2128 Ras GTPase-activating 85.7 1.1 2.3E-05 55.6 5.3 62 56-120 539-612 (1401)
15 KOG4427 E3 ubiquitin protein l 85.1 3.6 7.8E-05 48.9 8.8 24 49-72 27-50 (1096)
16 KOG0162 Myosin class I heavy c 79.7 2.1 4.5E-05 50.7 4.3 42 50-94 694-736 (1106)
17 KOG0942 E3 ubiquitin protein l 79.0 1.2 2.5E-05 53.5 2.2 27 47-73 24-50 (1001)
18 KOG0161 Myosin class II heavy 77.3 6.4 0.00014 51.0 7.9 45 76-120 775-819 (1930)
19 KOG0377 Protein serine/threoni 75.7 3.9 8.4E-05 46.2 4.9 34 50-83 15-48 (631)
20 KOG0161 Myosin class II heavy 75.5 7.1 0.00015 50.7 7.6 43 51-93 772-818 (1930)
21 COG5022 Myosin heavy chain [Cy 69.8 8.6 0.00019 48.4 6.3 52 65-119 735-787 (1463)
22 KOG0163 Myosin class VI heavy 67.4 12 0.00025 45.0 6.4 22 51-72 812-833 (1259)
23 KOG0164 Myosin class I heavy c 60.0 10 0.00023 45.1 4.3 40 77-120 699-738 (1001)
24 PF08763 Ca_chan_IQ: Voltage g 42.0 31 0.00066 26.6 2.9 20 52-71 9-28 (35)
25 KOG4427 E3 ubiquitin protein l 41.9 60 0.0013 39.3 6.6 26 73-98 29-54 (1096)
26 KOG0942 E3 ubiquitin protein l 37.7 52 0.0011 40.4 5.4 26 73-98 28-53 (1001)
27 KOG0163 Myosin class VI heavy 35.6 1E+02 0.0022 37.6 7.2 23 76-98 815-837 (1259)
28 PF15157 IQ-like: IQ-like 33.7 34 0.00073 31.3 2.4 23 50-72 45-67 (97)
29 KOG0165 Microtubule-associated 33.3 74 0.0016 38.7 5.6 25 49-73 940-964 (1023)
No 1
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.78 E-value=2.8e-05 Score=51.36 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 042390 52 ESVVIVIQAAVRGILAQRELL 72 (626)
Q Consensus 52 E~AAI~IQSAfRGyLARR~lr 72 (626)
..||+.||++||||++|+.|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 368999999999999999885
No 2
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.61 E-value=0.00011 Score=85.68 Aligned_cols=67 Identities=30% Similarity=0.402 Sum_probs=51.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042390 50 LDESVVIVIQAAVRGILAQRELLKL-KNVVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQTLVRARYARLGKE 120 (626)
Q Consensus 50 reE~AAI~IQSAfRGyLARR~lraL-KgiVRLQAlIRG~LVRRQaa~tLr~mqAIVkIQA~IRgrrARrs~e 120 (626)
....+++.||..+|||+.|+.|..+ ++++.||+++||+++|+.. . ...+++.+|+.+|++..|+.+.
T Consensus 671 vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~~---~-~~~aai~~q~~~r~~~~r~~y~ 738 (862)
T KOG0160|consen 671 VLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRET---E-REAAAIGIQKECRSYLNRRRYR 738 (862)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhh---H-HHHHHHHhHHHHHHHHHHHHHH
Confidence 3456778899999999999999866 4788899999999999822 2 3446666777777777777655
No 3
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.43 E-value=0.00032 Score=82.01 Aligned_cols=67 Identities=36% Similarity=0.364 Sum_probs=58.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhc
Q 042390 48 SPLDESVVIVIQAAVRGILAQRELLKLKNVVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQTLVRARYARL 117 (626)
Q Consensus 48 ~~reE~AAI~IQSAfRGyLARR~lraLKgiVRLQAlIRG~LVRRQaa~tLr~mqAIVkIQA~IRgrrARr 117 (626)
+.+...+++.||+.+||+++|+......+++.+|..+|+++.|++|... ..+++.+|+.+|+.++|.
T Consensus 692 f~~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~~~---~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 692 FLQLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYRAL---IPASITIQSGVRAMLARN 758 (862)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcc
Confidence 5678899999999999999998444556889999999999999999655 458999999999999998
No 4
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.26 E-value=0.00028 Score=48.68 Aligned_cols=22 Identities=41% Similarity=0.477 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 042390 51 DESVVIVIQAAVRGILAQRELL 72 (626)
Q Consensus 51 eE~AAI~IQSAfRGyLARR~lr 72 (626)
...||+.||+.||||++|+.|+
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5689999999999999999984
No 5
>PTZ00014 myosin-A; Provisional
Probab=96.73 E-value=0.002 Score=75.45 Aligned_cols=40 Identities=35% Similarity=0.464 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHhhHHHHHHH
Q 042390 54 VVIVIQAAVRGILAQRELLKL-KNVVKLQAAVRGHLVRRHA 93 (626)
Q Consensus 54 AAI~IQSAfRGyLARR~lraL-KgiVRLQAlIRG~LVRRQa 93 (626)
.|+.||++||||++|+.|..+ .++++||+.+||+++++..
T Consensus 779 ~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 678899999999999988754 5788889999998888764
No 6
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.55 E-value=0.0017 Score=76.79 Aligned_cols=74 Identities=28% Similarity=0.267 Sum_probs=57.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHhhHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHhhcC
Q 042390 47 DSPLDESVVIVIQAAVRGILAQRELLKLK-NVVKLQAAVRGHLVRRHAVGTLRC-------VQAIVKMQTLVRARYARLG 118 (626)
Q Consensus 47 e~~reE~AAI~IQSAfRGyLARR~lraLK-giVRLQAlIRG~LVRRQaa~tLr~-------mqAIVkIQA~IRgrrARrs 118 (626)
.....-.||..||..||||+.|+.|..++ -+|+||+.+||+.+|++|...... +.++-++|+.+|+++.|..
T Consensus 805 ~~r~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~ 884 (975)
T KOG0520|consen 805 DDRSDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRAL 884 (975)
T ss_pred ccccchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccc
Confidence 44556779999999999999999998765 699999999999999999765543 2344556777777766665
Q ss_pred CC
Q 042390 119 KE 120 (626)
Q Consensus 119 ~e 120 (626)
.+
T Consensus 885 ~e 886 (975)
T KOG0520|consen 885 FE 886 (975)
T ss_pred hh
Confidence 44
No 7
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.47 E-value=0.0041 Score=71.71 Aligned_cols=62 Identities=19% Similarity=0.161 Sum_probs=47.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 042390 50 LDESVVIVIQAAVRGILAQRELLKLKNVVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQTLVRARYARLGKEP 121 (626)
Q Consensus 50 reE~AAI~IQSAfRGyLARR~lraLKgiVRLQAlIRG~LVRRQaa~tLr~mqAIVkIQA~IRgrrARrs~e~ 121 (626)
+.-.-|+.||++||||++|.+|+.++++..|=..+|.+.+|- .+..||.++|+.+.++.+..
T Consensus 694 ~l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~wyR~~K~ks----------~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 694 RLPSLVTLLQKAWRGWLARQRYRRMKASATIIRWYRRYKLKS----------YVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhhhhccccCC
Confidence 344568999999999999999999987655544667554443 34458899999999988773
No 8
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=95.37 E-value=0.018 Score=38.06 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=16.9
Q ss_pred hhHHHHHHHHhhHHHHHHH
Q 042390 75 KNVVKLQAAVRGHLVRRHA 93 (626)
Q Consensus 75 KgiVRLQAlIRG~LVRRQa 93 (626)
++++.||+.+||+++|++|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4788999999999999987
No 9
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=94.98 E-value=0.052 Score=66.42 Aligned_cols=75 Identities=35% Similarity=0.385 Sum_probs=59.8
Q ss_pred CCCch-hhHHHHHHHHHHHHHHH---HHHHH--hhhhHHHHHHHHhhHHHHHHHhhHH----HHHHHHHHHHHHHHHHHh
Q 042390 46 DDSPL-DESVVIVIQAAVRGILA---QRELL--KLKNVVKLQAAVRGHLVRRHAVGTL----RCVQAIVKMQTLVRARYA 115 (626)
Q Consensus 46 ve~~r-eE~AAI~IQSAfRGyLA---RR~lr--aLKgiVRLQAlIRG~LVRRQaa~tL----r~mqAIVkIQA~IRgrrA 115 (626)
++.++ .......||++||||+. |..+. ..+.++.+|++.||+++|+.+...+ .|+.+++++|+.+|+.+.
T Consensus 558 ~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~ 637 (1401)
T KOG2128|consen 558 LDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPN 637 (1401)
T ss_pred hhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhccc
Confidence 34443 67789999999999995 11221 4567999999999999999987554 467899999999999999
Q ss_pred hcCCC
Q 042390 116 RLGKE 120 (626)
Q Consensus 116 Rrs~e 120 (626)
|..+.
T Consensus 638 r~~y~ 642 (1401)
T KOG2128|consen 638 RKDYK 642 (1401)
T ss_pred chHHH
Confidence 98775
No 10
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=94.69 E-value=0.062 Score=66.06 Aligned_cols=44 Identities=32% Similarity=0.435 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHhhHHHHHHH
Q 042390 50 LDESVVIVIQAAVRGILAQRELL-KLKNVVKLQAAVRGHLVRRHA 93 (626)
Q Consensus 50 reE~AAI~IQSAfRGyLARR~lr-aLKgiVRLQAlIRG~LVRRQa 93 (626)
.....+++||++|||++.||+|. +++.+..+|...+|..+|+..
T Consensus 743 ~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~ 787 (1463)
T COG5022 743 KLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLV 787 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhc
Confidence 34568999999999999999985 445555555555555555443
No 11
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=93.37 E-value=0.082 Score=36.47 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHhhHHHHHHH
Q 042390 74 LKNVVKLQAAVRGHLVRRHA 93 (626)
Q Consensus 74 LKgiVRLQAlIRG~LVRRQa 93 (626)
.++++.||+.+||+++|++|
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 35788999999999999988
No 12
>PTZ00014 myosin-A; Provisional
Probab=93.28 E-value=0.2 Score=59.27 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=35.0
Q ss_pred hHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcC
Q 042390 76 NVVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQTLVRARYARLG 118 (626)
Q Consensus 76 giVRLQAlIRG~LVRRQaa~tLr~mqAIVkIQA~IRgrrARrs 118 (626)
.++.||+.+||++.|++|... .++++.||+.+|++++++.
T Consensus 779 ~~~~iq~~~r~~~~r~~~~~~---~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVRKN---IKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999644 5699999999999999875
No 13
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=87.42 E-value=0.74 Score=55.44 Aligned_cols=78 Identities=23% Similarity=0.219 Sum_probs=60.0
Q ss_pred eccCCCCCchhhHHHHHHHHHHHHHHHHHHH-Hhhh-------------------------------hHHHHHHHHhhHH
Q 042390 41 IETDADDSPLDESVVIVIQAAVRGILAQREL-LKLK-------------------------------NVVKLQAAVRGHL 88 (626)
Q Consensus 41 v~~~~ve~~reE~AAI~IQSAfRGyLARR~l-raLK-------------------------------giVRLQAlIRG~L 88 (626)
+.+--+.......||.+||.+||..--++.. +.+. ++.++|.-+|||+
T Consensus 745 l~Dtl~avrdAa~aa~r~q~vfr~~~~~~~~a~~i~~~~~~~i~~~~~~~m~~~~a~~~~~~r~~~~aa~~iq~~f~~yk 824 (975)
T KOG0520|consen 745 LKDTLAAVRDAAQAAARIQAVFRAQSFQKKQAREIMDATKEQISEELAVSMKASSAFSMCDDRSDPAAASRIQKKFRGYK 824 (975)
T ss_pred cccccccccchHHHHHhhhhhhhhhhhhhhhHHHHHhhcchhhhhhhhhhhhcccchhcCccccchhHHHHhhhhhhhHH
Confidence 3444555666788999999999987666432 1100 3678899999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 042390 89 VRRHAVGTLRCVQAIVKMQTLVRARYARLGKEP 121 (626)
Q Consensus 89 VRRQaa~tLr~mqAIVkIQA~IRgrrARrs~e~ 121 (626)
.|+.+..+. +-+|+||+.+|++.+|+.|..
T Consensus 825 ~r~~~l~tr---~p~v~iqa~~rg~q~r~dy~k 854 (975)
T KOG0520|consen 825 QRKEFLSTR---QPIVKIQAAVRGYQVRKDYRK 854 (975)
T ss_pred hhhhhcccC---CccccchhhhhchhHhhhhhe
Confidence 999997554 689999999999999999884
No 14
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=85.67 E-value=1.1 Score=55.62 Aligned_cols=62 Identities=31% Similarity=0.338 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHhhHHHHHHHhhHHH----HHHHHHHHHHHHHHHHhhcCCC
Q 042390 56 IVIQAAVRGILAQRELLKLK--------NVVKLQAAVRGHLVRRHAVGTLR----CVQAIVKMQTLVRARYARLGKE 120 (626)
Q Consensus 56 I~IQSAfRGyLARR~lraLK--------giVRLQAlIRG~LVRRQaa~tLr----~mqAIVkIQA~IRgrrARrs~e 120 (626)
.+||+-.|||..|..++... .++.+|+++||+++ |..... ...-++++|+..|+.++|..+.
T Consensus 539 ~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~ 612 (1401)
T KOG2128|consen 539 LRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDVYLDSAKKEVVKFQSLTRGALSRKKYS 612 (1401)
T ss_pred hhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHHHHHHhhHHHHHHHHHHHHHHHHhhHH
Confidence 34599999999999887533 47889999999997 332222 2468899999999999998765
No 15
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.05 E-value=3.6 Score=48.91 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q 042390 49 PLDESVVIVIQAAVRGILAQRELL 72 (626)
Q Consensus 49 ~reE~AAI~IQSAfRGyLARR~lr 72 (626)
.++++||+.||+++|||++|+++.
T Consensus 27 rrr~~aa~~iq~~lrsyl~Rkk~~ 50 (1096)
T KOG4427|consen 27 RRREAAALFIQRVLRSYLVRKKAQ 50 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466789999999999999999986
No 16
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=79.68 E-value=2.1 Score=50.72 Aligned_cols=42 Identities=26% Similarity=0.272 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHhhHHHHHHHh
Q 042390 50 LDESVVIVIQAAVRGILAQRELLKLKN-VVKLQAAVRGHLVRRHAV 94 (626)
Q Consensus 50 reE~AAI~IQSAfRGyLARR~lraLKg-iVRLQAlIRG~LVRRQaa 94 (626)
.-..-|.+||.+||.|++||.|..+|. ..+ ++-|..-||++.
T Consensus 694 ~~d~~A~~IQkAWRrfv~rrky~k~ree~t~---ll~gKKeRRr~S 736 (1106)
T KOG0162|consen 694 KWDGMARRIQKAWRRFVARRKYEKMREEATK---LLLGKKERRRYS 736 (1106)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchHHHHHHH
Confidence 334579999999999999999988773 322 356777777774
No 17
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.02 E-value=1.2 Score=53.46 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=23.0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHh
Q 042390 47 DSPLDESVVIVIQAAVRGILAQRELLK 73 (626)
Q Consensus 47 e~~reE~AAI~IQSAfRGyLARR~lra 73 (626)
+..+++.+|++||+.||||++|++.+.
T Consensus 24 e~rk~e~~av~vQs~~Rg~~~r~~~~~ 50 (1001)
T KOG0942|consen 24 EERKQEKNAVKVQSFWRGFRVRHNQKL 50 (1001)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 445778899999999999999998753
No 18
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=77.31 E-value=6.4 Score=51.04 Aligned_cols=45 Identities=29% Similarity=0.267 Sum_probs=35.9
Q ss_pred hHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042390 76 NVVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQTLVRARYARLGKE 120 (626)
Q Consensus 76 giVRLQAlIRG~LVRRQaa~tLr~mqAIVkIQA~IRgrrARrs~e 120 (626)
-++.+||.|||+++|+.|......+.++..||.-+|.++..+.+.
T Consensus 775 ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~ 819 (1930)
T KOG0161|consen 775 IITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWP 819 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCH
Confidence 366778888888888888877777788888888888887777655
No 19
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=75.74 E-value=3.9 Score=46.25 Aligned_cols=34 Identities=21% Similarity=0.014 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 042390 50 LDESVVIVIQAAVRGILAQRELLKLKNVVKLQAA 83 (626)
Q Consensus 50 reE~AAI~IQSAfRGyLARR~lraLKgiVRLQAl 83 (626)
+.-+||+.||.++|+|.||...++.-...-+|++
T Consensus 15 raikaAilIQkWYRr~~ARle~rrr~twqIFqsl 48 (631)
T KOG0377|consen 15 RAIKAAILIQKWYRRYEARLEARRRCTWQIFQSL 48 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHH
Confidence 4578999999999999999988765555556665
No 20
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=75.47 E-value=7.1 Score=50.66 Aligned_cols=43 Identities=33% Similarity=0.457 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHhhHHHHHHH
Q 042390 51 DESVVIVIQAAVRGILAQRELLK----LKNVVKLQAAVRGHLVRRHA 93 (626)
Q Consensus 51 eE~AAI~IQSAfRGyLARR~lra----LKgiVRLQAlIRG~LVRRQa 93 (626)
...-++.+|+.||||++|+.|.. +.++..||.-+|.++..|..
T Consensus 772 ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w 818 (1930)
T KOG0161|consen 772 LSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTW 818 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 34568899999999999999953 34788899999998776654
No 21
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=69.76 E-value=8.6 Score=48.43 Aligned_cols=52 Identities=27% Similarity=0.311 Sum_probs=33.4
Q ss_pred HHHHHHHHhh-hhHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCC
Q 042390 65 ILAQRELLKL-KNVVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQTLVRARYARLGK 119 (626)
Q Consensus 65 yLARR~lraL-KgiVRLQAlIRG~LVRRQaa~tLr~mqAIVkIQA~IRgrrARrs~ 119 (626)
.|.-++-..+ ..+++||+.|||+.+||+|..+++ .+-.+|...++.++|+..
T Consensus 735 ~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k---~i~~~~~~~~~~~~~~~~ 787 (1463)
T COG5022 735 ALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALK---RIKKIQVIQHGFRLRRLV 787 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcccchhhhc
Confidence 3333333333 357899999999999999976655 444455555555555443
No 22
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=67.40 E-value=12 Score=45.03 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 042390 51 DESVVIVIQAAVRGILAQRELL 72 (626)
Q Consensus 51 eE~AAI~IQSAfRGyLARR~lr 72 (626)
+..+++++|+.+||||+|++++
T Consensus 812 Rae~v~k~Q~~~Rg~L~rkr~~ 833 (1259)
T KOG0163|consen 812 RAECVLKAQRIARGYLARKRHR 833 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 3457889999999999999986
No 23
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=60.01 E-value=10 Score=45.10 Aligned_cols=40 Identities=23% Similarity=0.138 Sum_probs=27.6
Q ss_pred HHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042390 77 VVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQTLVRARYARLGKE 120 (626)
Q Consensus 77 iVRLQAlIRG~LVRRQaa~tLr~mqAIVkIQA~IRgrrARrs~e 120 (626)
++.||..|||+++|.+|....+ +++.|+ .+|+...+-...
T Consensus 699 vtllQK~~RG~~~R~ry~rmka---~~~ii~-wyR~~K~ks~v~ 738 (1001)
T KOG0164|consen 699 VTLLQKAWRGWLARQRYRRMKA---SATIIR-WYRRYKLKSYVQ 738 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHH
Confidence 5678999999999999953332 444445 777766665443
No 24
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=42.05 E-value=31 Score=26.65 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 042390 52 ESVVIVIQAAVRGILAQREL 71 (626)
Q Consensus 52 E~AAI~IQSAfRGyLARR~l 71 (626)
--||..||-+||.|.+|+.-
T Consensus 9 ~YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 9 FYATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999864
No 25
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.88 E-value=60 Score=39.35 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHHhhHHHHHHHhhHHH
Q 042390 73 KLKNVVKLQAAVRGHLVRRHAVGTLR 98 (626)
Q Consensus 73 aLKgiVRLQAlIRG~LVRRQaa~tLr 98 (626)
+..+++.||+.+|||++|++++..++
T Consensus 29 r~~aa~~iq~~lrsyl~Rkk~~~~I~ 54 (1096)
T KOG4427|consen 29 REAAALFIQRVLRSYLVRKKAQIEIQ 54 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999974443
No 26
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.75 E-value=52 Score=40.36 Aligned_cols=26 Identities=38% Similarity=0.400 Sum_probs=21.4
Q ss_pred hhhhHHHHHHHHhhHHHHHHHhhHHH
Q 042390 73 KLKNVVKLQAAVRGHLVRRHAVGTLR 98 (626)
Q Consensus 73 aLKgiVRLQAlIRG~LVRRQaa~tLr 98 (626)
+.+++|.+|+++||+.+|++.....|
T Consensus 28 ~e~~av~vQs~~Rg~~~r~~~~~~~R 53 (1001)
T KOG0942|consen 28 QEKNAVKVQSFWRGFRVRHNQKLLFR 53 (1001)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999998754443
No 27
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=35.65 E-value=1e+02 Score=37.63 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=19.1
Q ss_pred hHHHHHHHHhhHHHHHHHhhHHH
Q 042390 76 NVVKLQAAVRGHLVRRHAVGTLR 98 (626)
Q Consensus 76 giVRLQAlIRG~LVRRQaa~tLr 98 (626)
.++++|+.+||||+|+++...+.
T Consensus 815 ~v~k~Q~~~Rg~L~rkr~~~ri~ 837 (1259)
T KOG0163|consen 815 CVLKAQRIARGYLARKRHRPRIA 837 (1259)
T ss_pred HHHHHHHHHHHHHHHhhhchHHH
Confidence 47889999999999999865443
No 28
>PF15157 IQ-like: IQ-like
Probab=33.71 E-value=34 Score=31.32 Aligned_cols=23 Identities=39% Similarity=0.327 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 042390 50 LDESVVIVIQAAVRGILAQRELL 72 (626)
Q Consensus 50 reE~AAI~IQSAfRGyLARR~lr 72 (626)
--+.-+..||.+||-|++|....
T Consensus 45 pLeskvkiiqrawre~lq~qd~~ 67 (97)
T PF15157_consen 45 PLESKVKIIQRAWREYLQRQDPL 67 (97)
T ss_pred chhHHHHHHHHHHHHHHHhcCCc
Confidence 34666888999999999998754
No 29
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=33.27 E-value=74 Score=38.65 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHh
Q 042390 49 PLDESVVIVIQAAVRGILAQRELLK 73 (626)
Q Consensus 49 ~reE~AAI~IQSAfRGyLARR~lra 73 (626)
.....||+.||.++|||.||+.|+.
T Consensus 940 enkKkaavviqkmirgfiarrkfqm 964 (1023)
T KOG0165|consen 940 ENKKKAAVVIQKMIRGFIARRKFQM 964 (1023)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4457899999999999999999975
Done!