Query 042390
Match_columns 626
No_of_seqs 232 out of 759
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 09:40:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042390.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042390hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ix7_C Myosin-5A; contractIle 99.0 5.7E-10 1.9E-14 87.7 7.0 48 50-97 3-51 (58)
2 1n2d_C IQ2 and IQ3 motifs from 98.9 2.5E-09 8.6E-14 80.9 6.6 42 52-93 3-47 (48)
3 2dfs_A Myosin-5A; myosin-V, in 98.7 1.2E-08 4.3E-13 118.7 9.2 68 52-120 768-836 (1080)
4 2dfs_A Myosin-5A; myosin-V, in 98.7 1.1E-08 3.7E-13 119.2 8.4 66 52-120 791-859 (1080)
5 1n2d_C IQ2 and IQ3 motifs from 98.0 6.6E-06 2.3E-10 62.1 5.5 43 75-118 4-46 (48)
6 2ix7_C Myosin-5A; contractIle 97.7 5.7E-05 2E-09 59.1 6.3 43 75-120 6-48 (58)
7 1wdc_A Scallop myosin; calcium 97.5 0.00017 5.9E-09 57.7 6.3 42 52-93 6-51 (64)
8 2bl0_A Major plasmodial myosin 97.4 0.00017 5.8E-09 57.7 5.5 41 53-93 5-49 (63)
9 1kk8_A Myosin heavy chain, str 97.3 0.00022 7.4E-09 81.8 6.1 42 52-93 779-824 (837)
10 2bl0_A Major plasmodial myosin 97.2 0.0005 1.7E-08 55.0 6.2 44 76-119 6-49 (63)
11 2l53_B CAM, voltage-gated sodi 97.2 0.00017 5.7E-09 52.0 2.8 25 48-72 2-26 (31)
12 1wdc_A Scallop myosin; calcium 97.2 0.0006 2.1E-08 54.6 6.4 45 75-119 7-51 (64)
13 2kxw_B Sodium channel protein 97.1 0.00022 7.5E-09 49.9 2.6 23 48-70 2-24 (27)
14 1i84_S Smooth muscle myosin he 96.6 0.0021 7.3E-08 75.5 6.8 42 52-93 792-837 (1184)
15 1kk8_A Myosin heavy chain, str 96.4 0.0056 1.9E-07 70.3 8.4 46 75-120 780-825 (837)
16 3gn4_A Myosin-VI; unconvention 95.9 0.0086 2.9E-07 56.4 5.2 32 52-83 45-77 (148)
17 1i84_S Smooth muscle myosin he 95.5 0.024 8.4E-07 66.7 8.4 56 65-120 782-838 (1184)
18 4anj_A Unconventional myosin-V 90.6 0.31 1.1E-05 57.5 6.7 42 51-93 774-816 (1052)
19 1w7j_A Myosin VA; motor protei 90.6 0.14 4.7E-06 58.7 3.8 25 52-76 768-792 (795)
20 4dck_A Sodium channel protein 88.4 0.31 1.1E-05 46.6 3.7 26 48-73 126-151 (168)
21 3gn4_A Myosin-VI; unconvention 85.1 1.4 4.9E-05 41.5 6.2 23 76-98 47-69 (148)
22 4anj_A Unconventional myosin-V 68.9 6.3 0.00022 46.7 6.6 41 74-117 774-814 (1052)
23 2l53_B CAM, voltage-gated sodi 54.5 8.2 0.00028 27.8 2.5 19 75-93 7-25 (31)
24 1w7j_A Myosin VA; motor protei 53.2 13 0.00043 42.9 5.3 22 75-96 769-790 (795)
25 2kxw_B Sodium channel protein 42.1 16 0.00054 25.5 2.4 16 76-91 8-23 (27)
26 3dvk_B Voltage-dependent R-typ 29.2 23 0.0008 24.1 1.5 17 53-69 7-23 (23)
27 2ycu_A Non muscle myosin 2C, a 28.8 5.5 0.00019 46.8 -2.8 36 80-118 770-805 (995)
28 2f3y_B Voltage-dependent L-typ 25.1 46 0.0016 23.3 2.3 19 54-72 4-22 (26)
29 3bxl_B CAM, voltage-dependent 23.1 57 0.002 22.8 2.5 18 53-70 3-20 (26)
30 1m45_B IQ2, IQ2 motif from MYO 22.9 83 0.0028 21.6 3.2 20 53-72 4-23 (26)
31 2be6_D Voltage-dependent L-typ 22.5 66 0.0022 24.1 2.9 20 53-72 12-31 (37)
No 1
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=99.01 E-value=5.7e-10 Score=87.68 Aligned_cols=48 Identities=27% Similarity=0.265 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHhhHHHHHHHhhHH
Q 042390 50 LDESVVIVIQAAVRGILAQRELLKLK-NVVKLQAAVRGHLVRRHAVGTL 97 (626)
Q Consensus 50 reE~AAI~IQSAfRGyLARR~lraLK-giVRLQAlIRG~LVRRQaa~tL 97 (626)
+...||+.||++||||++|+.|..++ +++.||+.+||+++|+.+....
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r 51 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLR 51 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999876 8999999999999999996543
No 2
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.90 E-value=2.5e-09 Score=80.94 Aligned_cols=42 Identities=24% Similarity=0.394 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHhhHHHHHHH
Q 042390 52 ESVVIVIQAAVRGILAQRELLKLK---NVVKLQAAVRGHLVRRHA 93 (626)
Q Consensus 52 E~AAI~IQSAfRGyLARR~lraLK---giVRLQAlIRG~LVRRQa 93 (626)
..||+.||++||||++|+.|..++ +++.||+.+||+++|+.|
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 568999999999999999997654 899999999999999987
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.75 E-value=1.2e-08 Score=118.73 Aligned_cols=68 Identities=28% Similarity=0.413 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042390 52 ESVVIVIQAAVRGILAQRELLKLK-NVVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQTLVRARYARLGKE 120 (626)
Q Consensus 52 E~AAI~IQSAfRGyLARR~lraLK-giVRLQAlIRG~LVRRQaa~tLr~mqAIVkIQA~IRgrrARrs~e 120 (626)
..||+.||++||||++|++|+.++ +++.||+.+||+++|+++.. ++...++++||+.+|++++|+.+.
T Consensus 768 ~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~-lr~~~AAi~IQs~~Rg~~~Rk~y~ 836 (1080)
T 2dfs_A 768 RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATF-LRRTRAAIIIQKFQRMYVVRKRYQ 836 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccc-cccchhHHHHHHHHhhHHHHHHHH
Confidence 579999999999999999998765 78999999999999999864 456788999999999999998765
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.74 E-value=1.1e-08 Score=119.25 Aligned_cols=66 Identities=26% Similarity=0.234 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042390 52 ESVVIVIQAAVRGILAQRELLKL---KNVVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQTLVRARYARLGKE 120 (626)
Q Consensus 52 E~AAI~IQSAfRGyLARR~lraL---KgiVRLQAlIRG~LVRRQaa~tLr~mqAIVkIQA~IRgrrARrs~e 120 (626)
..||+.||++||||++|+.++.+ +++++||+.+||+++|++|.... .+++.||+.+||+++|+.+.
T Consensus 791 r~aai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~~~Rk~y~~lr---~aai~IQs~~Rg~laRr~~~ 859 (1080)
T 2dfs_A 791 RRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMR---DATIALQALLRGYLVRNKYQ 859 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666665432 35666666666666666664332 35666666666666665443
No 5
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.02 E-value=6.6e-06 Score=62.09 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=37.2
Q ss_pred hhHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcC
Q 042390 75 KNVVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQTLVRARYARLG 118 (626)
Q Consensus 75 KgiVRLQAlIRG~LVRRQaa~tLr~mqAIVkIQA~IRgrrARrs 118 (626)
++++.||+.+||+++|+++... +...+++.||+.+||+++|+.
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~~~~-~~~~aai~IQ~~~Rg~~~Rk~ 46 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRVNDE-MKVNCATLLQAAYRGHSIRAN 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHh
Confidence 4789999999999999999643 345699999999999999974
No 6
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=97.72 E-value=5.7e-05 Score=59.12 Aligned_cols=43 Identities=26% Similarity=0.400 Sum_probs=37.6
Q ss_pred hhHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042390 75 KNVVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQTLVRARYARLGKE 120 (626)
Q Consensus 75 KgiVRLQAlIRG~LVRRQaa~tLr~mqAIVkIQA~IRgrrARrs~e 120 (626)
.+++.||+.+||+++|++|.... .+++.||+.+||+++|+.+.
T Consensus 6 ~aai~IQ~~~Rg~~~Rk~~~~~r---~aai~IQ~~~Rg~~aR~~~~ 48 (58)
T 2ix7_C 6 AACIRIQKTIRGWLLRKRYLCMQ---RAAITVQRYVRGYQARCYAK 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999996543 59999999999999998654
No 7
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.50 E-value=0.00017 Score=57.73 Aligned_cols=42 Identities=29% Similarity=0.461 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh---h-hHHHHHHHHhhHHHHHHH
Q 042390 52 ESVVIVIQAAVRGILAQRELLKL---K-NVVKLQAAVRGHLVRRHA 93 (626)
Q Consensus 52 E~AAI~IQSAfRGyLARR~lraL---K-giVRLQAlIRG~LVRRQa 93 (626)
...++.||+++|||++|+.|..+ + ++..||.-+|+++.++..
T Consensus 6 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w 51 (64)
T 1wdc_A 6 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 45678888888888888888654 2 455778888888777654
No 8
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.44 E-value=0.00017 Score=57.71 Aligned_cols=41 Identities=24% Similarity=0.342 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh---h-hHHHHHHHHhhHHHHHHH
Q 042390 53 SVVIVIQAAVRGILAQRELLKL---K-NVVKLQAAVRGHLVRRHA 93 (626)
Q Consensus 53 ~AAI~IQSAfRGyLARR~lraL---K-giVRLQAlIRG~LVRRQa 93 (626)
..++.||+++|||++|+.|..+ + ++..||.-+|+++.++..
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w 49 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNW 49 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4567777777777777777644 2 444667777776666543
No 9
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=97.28 E-value=0.00022 Score=81.79 Aligned_cols=42 Identities=29% Similarity=0.423 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHhhHHHHHHH
Q 042390 52 ESVVIVIQAAVRGILAQRELLKL----KNVVKLQAAVRGHLVRRHA 93 (626)
Q Consensus 52 E~AAI~IQSAfRGyLARR~lraL----KgiVRLQAlIRG~LVRRQa 93 (626)
..+|+.||++||||++|++|+.+ .+++.||+.+||+++||.+
T Consensus 779 ~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 779 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 44788888888888888888765 3678888888888888876
No 10
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.25 E-value=0.0005 Score=54.99 Aligned_cols=44 Identities=25% Similarity=0.131 Sum_probs=40.0
Q ss_pred hHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCC
Q 042390 76 NVVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQTLVRARYARLGK 119 (626)
Q Consensus 76 giVRLQAlIRG~LVRRQaa~tLr~mqAIVkIQA~IRgrrARrs~ 119 (626)
.++.||+.+||+++|+.|...+....++..||.-+|++..++..
T Consensus 6 i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w 49 (63)
T 2bl0_A 6 IVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNW 49 (63)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 57899999999999999998888888998999999999998864
No 11
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=97.23 E-value=0.00017 Score=52.01 Aligned_cols=25 Identities=40% Similarity=0.393 Sum_probs=22.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHH
Q 042390 48 SPLDESVVIVIQAAVRGILAQRELL 72 (626)
Q Consensus 48 ~~reE~AAI~IQSAfRGyLARR~lr 72 (626)
..+|+.||++||.+||+||+|+.+.
T Consensus 2 rk~Ee~aA~vIQrA~R~yl~rr~~~ 26 (31)
T 2l53_B 2 PGSEEVSAMVIQRAFRRHLLQRSLK 26 (31)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4578999999999999999998754
No 12
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.22 E-value=0.0006 Score=54.56 Aligned_cols=45 Identities=20% Similarity=0.149 Sum_probs=40.4
Q ss_pred hhHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCC
Q 042390 75 KNVVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQTLVRARYARLGK 119 (626)
Q Consensus 75 KgiVRLQAlIRG~LVRRQaa~tLr~mqAIVkIQA~IRgrrARrs~ 119 (626)
..++.|||.+||+++|+.|...+....++..||.-+|++..++..
T Consensus 7 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w 51 (64)
T 1wdc_A 7 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 357899999999999999998888888998999999999998754
No 13
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=97.13 E-value=0.00022 Score=49.89 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=20.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHH
Q 042390 48 SPLDESVVIVIQAAVRGILAQRE 70 (626)
Q Consensus 48 ~~reE~AAI~IQSAfRGyLARR~ 70 (626)
..+++.||++||.+||+||+|+.
T Consensus 2 rk~Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 2 RKQEEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Confidence 45789999999999999999864
No 14
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.60 E-value=0.0021 Score=75.48 Aligned_cols=42 Identities=31% Similarity=0.434 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHhhHHHHHHH
Q 042390 52 ESVVIVIQAAVRGILAQRELLKL----KNVVKLQAAVRGHLVRRHA 93 (626)
Q Consensus 52 E~AAI~IQSAfRGyLARR~lraL----KgiVRLQAlIRG~LVRRQa 93 (626)
..+|+.||++||||++|+.|..+ .+++.||+.+|||+.||.+
T Consensus 792 ~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~ 837 (1184)
T 1i84_S 792 TDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW 837 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 36899999999999999999765 3788999999999999875
No 15
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.41 E-value=0.0056 Score=70.34 Aligned_cols=46 Identities=20% Similarity=0.158 Sum_probs=40.8
Q ss_pred hhHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042390 75 KNVVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQTLVRARYARLGKE 120 (626)
Q Consensus 75 KgiVRLQAlIRG~LVRRQaa~tLr~mqAIVkIQA~IRgrrARrs~e 120 (626)
+.+++||+.+||+++|++|...+....+++.||+.+|++++|+.+.
T Consensus 780 ~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~ 825 (837)
T 1kk8_A 780 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 825 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchH
Confidence 3578999999999999999877766789999999999999998754
No 16
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=95.85 E-value=0.0086 Score=56.39 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHH
Q 042390 52 ESVVIVIQAAVRGILAQRELL-KLKNVVKLQAA 83 (626)
Q Consensus 52 E~AAI~IQSAfRGyLARR~lr-aLKgiVRLQAl 83 (626)
..|+|+||+++||||+|+.++ .+.|+.++.++
T Consensus 45 ~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L 77 (148)
T 3gn4_A 45 AEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTL 77 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 456666666666666666665 34555555444
No 17
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.47 E-value=0.024 Score=66.70 Aligned_cols=56 Identities=23% Similarity=0.234 Sum_probs=44.8
Q ss_pred HHHHHHHHhh-hhHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042390 65 ILAQRELLKL-KNVVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQTLVRARYARLGKE 120 (626)
Q Consensus 65 yLARR~lraL-KgiVRLQAlIRG~LVRRQaa~tLr~mqAIVkIQA~IRgrrARrs~e 120 (626)
+|...+-..+ ..++.||+.+||+++|++|...+....+++.||+.+|+++.|+.+.
T Consensus 782 ~LE~~r~~~l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~~ 838 (1184)
T 1i84_S 782 HLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWP 838 (1184)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3443333333 4678999999999999999887777789999999999999998753
No 18
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=90.64 E-value=0.31 Score=57.54 Aligned_cols=42 Identities=12% Similarity=0.069 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHhhHHHHHHH
Q 042390 51 DESVVIVIQAAVRGILAQRELLKLK-NVVKLQAAVRGHLVRRHA 93 (626)
Q Consensus 51 eE~AAI~IQSAfRGyLARR~lraLK-giVRLQAlIRG~LVRRQa 93 (626)
...+|+.||. +|||++|++|++++ +++.+|.+.|+...|+..
T Consensus 774 ~~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~ 816 (1052)
T 4anj_A 774 PDHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEA 816 (1052)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3567777774 79999999998775 778888888887666554
No 19
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=90.63 E-value=0.14 Score=58.72 Aligned_cols=25 Identities=24% Similarity=0.575 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhh
Q 042390 52 ESVVIVIQAAVRGILAQRELLKLKN 76 (626)
Q Consensus 52 E~AAI~IQSAfRGyLARR~lraLKg 76 (626)
..+|+.||++||||++||+|+++|.
T Consensus 768 ~~~~~~iQ~~~Rg~l~R~~~~~~r~ 792 (795)
T 1w7j_A 768 RAACIRIQKTIRGWLMRKKYMRMRR 792 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888887764
No 20
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=88.42 E-value=0.31 Score=46.64 Aligned_cols=26 Identities=38% Similarity=0.394 Sum_probs=22.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHh
Q 042390 48 SPLDESVVIVIQAAVRGILAQRELLK 73 (626)
Q Consensus 48 ~~reE~AAI~IQSAfRGyLARR~lra 73 (626)
..++..||++||.|||.|+.|+.+..
T Consensus 126 ~~~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 126 RKHEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc
Confidence 35789999999999999999988764
No 21
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=85.14 E-value=1.4 Score=41.49 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=19.4
Q ss_pred hHHHHHHHHhhHHHHHHHhhHHH
Q 042390 76 NVVKLQAAVRGHLVRRHAVGTLR 98 (626)
Q Consensus 76 giVRLQAlIRG~LVRRQaa~tLr 98 (626)
++++||+.+|||++|+++...+.
T Consensus 47 ~~i~iQktvR~~L~rkkhkPRi~ 69 (148)
T 3gn4_A 47 ACIKMQKTIRMWLCKRRHKPRID 69 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH
Confidence 57899999999999999975544
No 22
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=68.93 E-value=6.3 Score=46.69 Aligned_cols=41 Identities=12% Similarity=-0.001 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhc
Q 042390 74 LKNVVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQTLVRARYARL 117 (626)
Q Consensus 74 LKgiVRLQAlIRG~LVRRQaa~tLr~mqAIVkIQA~IRgrrARr 117 (626)
+..++.+|..+||+++|++|.... .+++.+|...|.++.|+
T Consensus 774 ~~~~~~~iq~~r~~l~r~~~~k~~---~~a~~i~~~~r~~~~r~ 814 (1052)
T 4anj_A 774 PDHLAELVKRVNHWLICSRWKKVQ---WCSLSVIKLKNKIKYRA 814 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 344555655689999999996544 46666666666666554
No 23
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=54.48 E-value=8.2 Score=27.83 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=15.9
Q ss_pred hhHHHHHHHHhhHHHHHHH
Q 042390 75 KNVVKLQAAVRGHLVRRHA 93 (626)
Q Consensus 75 KgiVRLQAlIRG~LVRRQa 93 (626)
.+++.||..+|+|+.|+..
T Consensus 7 ~aA~vIQrA~R~yl~rr~~ 25 (31)
T 2l53_B 7 VSAMVIQRAFRRHLLQRSL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4678899999999998764
No 24
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=53.16 E-value=13 Score=42.88 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=17.4
Q ss_pred hhHHHHHHHHhhHHHHHHHhhH
Q 042390 75 KNVVKLQAAVRGHLVRRHAVGT 96 (626)
Q Consensus 75 KgiVRLQAlIRG~LVRRQaa~t 96 (626)
+.+++||+.+||+++||+|...
T Consensus 769 ~~~~~iQ~~~Rg~l~R~~~~~~ 790 (795)
T 1w7j_A 769 AACIRIQKTIRGWLMRKKYMRM 790 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3678889999999999888543
No 25
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=42.13 E-value=16 Score=25.51 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=9.5
Q ss_pred hHHHHHHHHhhHHHHH
Q 042390 76 NVVKLQAAVRGHLVRR 91 (626)
Q Consensus 76 giVRLQAlIRG~LVRR 91 (626)
+++.||..+|+|+.|+
T Consensus 8 aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 8 SAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4556666666666554
No 26
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=29.22 E-value=23 Score=24.10 Aligned_cols=17 Identities=6% Similarity=0.079 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHH...
Q 042390 53 SVVIVIQAAVRGILAQR... 69 (626)
Q Consensus 53 ~AAI~IQSAfRGyLARR... 69 (626)
-|+..||-.||.+..|+
T Consensus 7 YA~llI~d~~r~~k~r~... 23 (23)
T 3dvk_B 7 YAAMMIMDYYKQSKVKKxxx 26 (26)
T ss_dssp HHHHHHHHHHHHHHHTC...
T ss_pred HHHHHHHHHHHHHhccC...
Confidence 48899999999998764
No 27
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=28.83 E-value=5.5 Score=46.77 Aligned_cols=36 Identities=11% Similarity=0.038 Sum_probs=17.1
Q ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcC
Q 042390 80 LQAAVRGHLVRRHAVGTLRCVQAIVKMQTLVRARYARLG 118 (626)
Q Consensus 80 LQAlIRG~LVRRQaa~tLr~mqAIVkIQA~IRgrrARrs 118 (626)
|+..||+...++++. +...+++.||..+|+++.++.
T Consensus 770 Ll~WIr~k~a~l~~r---~~~~sl~~IQ~~ir~f~~fr~ 805 (995)
T 2ycu_A 770 LVQWINDKQASLESR---DFGDSIESVQSFMNAHKEYKK 805 (995)
T ss_dssp HHHHTTTTTCCCSCH---HHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHH
Confidence 444555554443331 223355556666665555443
No 28
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=25.05 E-value=46 Score=23.26 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042390 54 VVIVIQAAVRGILAQRELL 72 (626)
Q Consensus 54 AAI~IQSAfRGyLARR~lr 72 (626)
|...||-+||.|..|+.-.
T Consensus 4 at~LIqdyfRkfkkrke~~ 22 (26)
T 2f3y_B 4 ATFLIQEYFRKFKKRKEQX 22 (26)
T ss_pred hhhhHHHHHHHHHHhHHhh
Confidence 5678999999999998653
No 29
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=23.07 E-value=57 Score=22.80 Aligned_cols=18 Identities=6% Similarity=0.106 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042390 53 SVVIVIQAAVRGILAQRE 70 (626)
Q Consensus 53 ~AAI~IQSAfRGyLARR~ 70 (626)
-||..||-+||.+..||.
T Consensus 3 YAa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 3 YAAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred hHHHHHHHHHHHHHhhhh
Confidence 489999999999999876
No 30
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=22.87 E-value=83 Score=21.59 Aligned_cols=20 Identities=10% Similarity=0.380 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042390 53 SVVIVIQAAVRGILAQRELL 72 (626)
Q Consensus 53 ~AAI~IQSAfRGyLARR~lr 72 (626)
.|+..+|..++||+-|+++.
T Consensus 4 qaikylqnnikgfiirqrvn 23 (26)
T 1m45_B 4 QAIKYLQNNIKGFIIRQRVN 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccceEEEeeecc
Confidence 56777888888888887754
No 31
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=22.45 E-value=66 Score=24.12 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042390 53 SVVIVIQAAVRGILAQRELL 72 (626)
Q Consensus 53 ~AAI~IQSAfRGyLARR~lr 72 (626)
-|...||-+||.|..|+.-.
T Consensus 12 YatfLIQdyFRkfkkrke~~ 31 (37)
T 2be6_D 12 YATFLIQEYFRKFKKRKEQG 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999998753
Done!