BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042396
(472 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NQ6|A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A
From Streptomyces Halstedii Jm8
Length = 302
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 136/287 (47%), Gaps = 25/287 (8%)
Query: 184 FGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHN 243
FG A+ N L AY + ++F E+EMKW + E+S +SA+D ++ A++
Sbjct: 15 FGAAVAANHLGEAAYASTLDAQFGSVTPENEMKWDAVESSRNSFSFSAADRIVSHAQSKG 74
Query: 244 IAVRGHNIFWDDPQYQPGWVNSLSPSDLSKAADKRINSVTSRYKGQVIAWDVVNENLH-- 301
+ VRGH + W PGWV+ L+ +DL A + I V + YKG++ +WDVVNE
Sbjct: 75 MKVRGHTLVWH--SQLPGWVSPLAATDLRSAMNNHITQVMTHYKGKIHSWDVVNEAFQDG 132
Query: 302 ------FSFFESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKL 355
S F+ KLG F ++D L NDYNT D ++ K+ + K
Sbjct: 133 GSGARRSSPFQDKLGNGFIEEAFRTARTVDADAKLCYNDYNT--DGQNAKSNAVYEMVKD 190
Query: 356 RQISEFPGNQNLRIGIGLESHF--STPNIPYMRASIDTLGATGLPIWLTEVDVQSSPN-Q 412
+ P + +G +SHF ++P +A++ G+ + +TE+D++ S + Q
Sbjct: 191 FKQRGVPID-----CVGFQSHFNSNSPVPSDFQANLQRFADLGVDVQITELDIEGSGSAQ 245
Query: 413 AQYLEQILREAHAHPKVQGIVVWA-----AWKPSGCYRMCLTDNNFK 454
A +++ A + GI VW +W+ G + D N K
Sbjct: 246 AANYTKVVNACLAVTRCTGITVWGVTDKYSWRSGGTPLLFDGDYNKK 292
>pdb|1E0V|A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme
Intermediate At 1.7 A
Length = 313
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/297 (29%), Positives = 141/297 (47%), Gaps = 27/297 (9%)
Query: 184 FGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHN 243
FG AI L+++ Y + F + E+EMK +TE G+ ++S++D + +A +
Sbjct: 16 FGTAIASGRLSDSTYTSIAGREFNMVTAENEMKIDATEPQRGQFNFSSADRVYNWAVQNG 75
Query: 244 IAVRGHNIFWDDPQYQPGWVNSLSPSDLSKAADKRINSVTSRYKGQVIAWDVVNENLHFS 303
VRGH + W Q PGW+ SLS S L +A IN V + YKG+++ WDVVNE
Sbjct: 76 KQVRGHTLAWHSQQ--PGWMQSLSGSALRQAMIDHINGVMAHYKGKIVQWDVVNEAFADG 133
Query: 304 FFESKLGQN--ASG-----VFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLR 356
++ N SG V F + D + L NDYN +E+ K T AMY
Sbjct: 134 SSGARRDSNLQRSGNDWIEVAFRTARAADPSAKLCYNDYN-VENWTWAK-TQAMY----N 187
Query: 357 QISEFPGNQNLRIGIGLESHFSTPNIPY---MRASIDTLGATGLPIWLTEVDVQSSPNQA 413
+ +F +G +SHF++ + PY R ++ A G+ + +TE+D+Q +P A
Sbjct: 188 MVRDFKQRGVPIDCVGFQSHFNSGS-PYNSNFRTTLQNFAALGVDVAITELDIQGAP--A 244
Query: 414 QYLEQILREAHAHPKVQGIVVWAAWKPSGCYR-----MCLTDNNFKNLATGDVVDKL 465
+ + A + GI VW + S +R + ++ K A V+D L
Sbjct: 245 STYANVTNDCLAVSRCLGITVWGV-RDSDSWRSEQTPLLFNNDGSKKAAYTAVLDAL 300
>pdb|1E0W|A Chain A, Xylanase 10a From Sreptomyces Lividans. Native Structure
At 1.2 Angstrom Resolution
pdb|1E0X|A Chain A, Xylanase 10a From Sreptomyces Lividans. Xylobiosyl-Enzyme
Intermediate At 1.65 A
pdb|1E0X|B Chain B, Xylanase 10a From Sreptomyces Lividans. Xylobiosyl-Enzyme
Intermediate At 1.65 A
pdb|1OD8|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-Isofagomine Lactam
pdb|1V0K|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-Deoxynojirimycin At Ph 5.8
pdb|1V0L|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-isofagomine At Ph 5.8
pdb|1V0M|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-deoxynojirimycin At Ph 7.5
pdb|1V0N|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-Isofagomine At Ph 7.5
Length = 313
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/297 (29%), Positives = 141/297 (47%), Gaps = 27/297 (9%)
Query: 184 FGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHN 243
FG AI L+++ Y + F + E+EMK +TE G+ ++S++D + +A +
Sbjct: 16 FGTAIASGRLSDSTYTSIAGREFNMVTAENEMKIDATEPQRGQFNFSSADRVYNWAVQNG 75
Query: 244 IAVRGHNIFWDDPQYQPGWVNSLSPSDLSKAADKRINSVTSRYKGQVIAWDVVNENLHFS 303
VRGH + W Q PGW+ SLS S L +A IN V + YKG+++ WDVVNE
Sbjct: 76 KQVRGHTLAWHSQQ--PGWMQSLSGSALRQAMIDHINGVMAHYKGKIVQWDVVNEAFADG 133
Query: 304 FFESKLGQN--ASG-----VFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLR 356
++ N SG V F + D + L NDYN +E+ K T AMY
Sbjct: 134 SSGARRDSNLQRSGNDWIEVAFRTARAADPSAKLCYNDYN-VENWTWAK-TQAMY----N 187
Query: 357 QISEFPGNQNLRIGIGLESHFSTPNIPY---MRASIDTLGATGLPIWLTEVDVQSSPNQA 413
+ +F +G +SHF++ + PY R ++ A G+ + +TE+D+Q +P A
Sbjct: 188 MVRDFKQRGVPIDCVGFQSHFNSGS-PYNSNFRTTLQNFAALGVDVAITELDIQGAP--A 244
Query: 414 QYLEQILREAHAHPKVQGIVVWAAWKPSGCYR-----MCLTDNNFKNLATGDVVDKL 465
+ + A + GI VW + S +R + ++ K A V+D L
Sbjct: 245 STYANVTNDCLAVSRCLGITVWGV-RDSDSWRSEQTPLLFNNDGSKKAAYTAVLDAL 300
>pdb|1XAS|A Chain A, Crystal Structure, At 2.6 Angstroms Resolution, Of The
Streptomyces Lividans Xylanase A, A Member Of The F
Family Of Beta-1,4-D-Glycanses
Length = 299
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 127/262 (48%), Gaps = 21/262 (8%)
Query: 184 FGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHN 243
FG AI L+++ Y + F + E+EMK +TE G+ ++S++D + +A +
Sbjct: 16 FGTAIASGRLSDSTYTSIAGREFNMVTAENEMKIDATEPQRGQFNFSSADRVYNWAVQNG 75
Query: 244 IAVRGHNIFWDDPQYQPGWVNSLSPSDLSKAADKRINSVTSRYKGQVIAWDVVNENLHFS 303
VRGH + W Q PGW+ SLS L +A IN V + YKG+++ WDVVNE
Sbjct: 76 KQVRGHTLAWHSQQ--PGWMQSLSGRPLRQAMIDHINGVMAHYKGKIVQWDVVNEAFADG 133
Query: 304 FFESKLGQN--ASG-----VFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLR 356
++ N SG V F + D + L NDYN +E+ K T AMY
Sbjct: 134 SSGARRDSNLQRSGNDWIEVAFRTARAADPSAKLCYNDYN-VENWTWAK-TQAMY----N 187
Query: 357 QISEFPGNQNLRIGIGLESHFSTPNIPY---MRASIDTLGATGLPIWLTEVDVQSSPNQA 413
+ +F +G +SHF++ + PY R ++ A G+ + +TE+D+Q +P A
Sbjct: 188 MVRDFKQRGVPIDCVGFQSHFNSGS-PYNSNFRTTLQNFAALGVDVAITELDIQGAP--A 244
Query: 414 QYLEQILREAHAHPKVQGIVVW 435
+ + A + GI VW
Sbjct: 245 STYANVTNDCLAVSRCLGITVW 266
>pdb|1TA3|B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With
Inhibitor (Xip)
Length = 303
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 129/263 (49%), Gaps = 22/263 (8%)
Query: 184 FGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHN 243
FG ++ +L N+ + S+F V E+ MKW + E S G +S +D ++ +A HN
Sbjct: 17 FGTCSDQALLQNSQNEAIVASQFGVITPENSMKWDALEPSQGNFGWSGADYLVDYATQHN 76
Query: 244 IAVRGHNIFWDDPQYQPGWVNSLSPSD-LSKAADKRINSVTSRYKGQVIAWDVVNE---- 298
VRGH + W P WV+S+ ++ L IN V RYKG+++ WDVVNE
Sbjct: 77 KKVRGHTLVWHSQ--LPSWVSSIGDANTLRSVMTNHINEVVGRYKGKIMHWDVVNEIFNE 134
Query: 299 --NLHFSFFESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLR 356
S F + LG++ + F + D L++NDYN DS T AM +
Sbjct: 135 DGTFRNSVFYNLLGEDFVRIAFETARAADPDAKLYINDYNL--DSASYAKTQAMASYVKK 192
Query: 357 QISE-FPGNQNLRIGIGLESHFSTPNIPYMRA--SIDTLGATGLP-IWLTEVDVQSSPNQ 412
++E P + GIG ++H+S+ + A ++ +L TG+ + +TE+D+ + +
Sbjct: 193 WLAEGVPID-----GIGSQAHYSSSHWSSTEAAGALSSLANTGVSEVAITELDIAGAAS- 246
Query: 413 AQYLEQILREAHAHPKVQGIVVW 435
+ YL +L K GI VW
Sbjct: 247 SDYL-NLLNACLNEQKCVGITVW 268
>pdb|1XYF|A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
pdb|1XYF|B Chain B, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
pdb|1ISV|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylose
pdb|1ISV|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylose
pdb|1ISW|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylobiose
pdb|1ISW|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylobiose
pdb|1ISX|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylotriose
pdb|1ISX|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylotriose
pdb|1ISY|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Glucose
pdb|1ISY|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Glucose
pdb|1ISZ|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Galactose
pdb|1ISZ|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Galactose
pdb|1IT0|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Lactose
pdb|1IT0|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Lactose
pdb|1V6U|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 2(2)-Alpha-L-
Arabinofuranosyl-Xylobiose
pdb|1V6U|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 2(2)-Alpha-L-
Arabinofuranosyl-Xylobiose
pdb|1V6V|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 3(2)-Alpha-L-
Arabinofuranosyl-Xylotriose
pdb|1V6V|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 3(2)-Alpha-L-
Arabinofuranosyl-Xylotriose
pdb|1V6W|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
2(2)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylobiose
pdb|1V6W|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
2(2)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylobiose
pdb|1V6X|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
3(3)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylotriose
pdb|1V6X|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
3(3)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylotriose
Length = 436
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 124/265 (46%), Gaps = 25/265 (9%)
Query: 184 FGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHN 243
FG AI L ++AY + F + E+EMK +TE G+ ++SA D + +A +
Sbjct: 16 FGTAIASGKLGDSAYTTIASREFNMVTAENEMKIDATEPQRGQFNFSAGDRVYNWAVQNG 75
Query: 244 IAVRGHNIFWDDPQYQPGWVNSLSPSDLSKAADKRINSVTSRYKGQVIAWDVVNENLHFS 303
VRGH + W Q PGW+ SLS S L +A IN V YKG++ WDVVNE FS
Sbjct: 76 KQVRGHTLAWHSQQ--PGWMQSLSGSTLRQAMIDHINGVMGHYKGKIAQWDVVNE--AFS 131
Query: 304 FFES---------KLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQK 354
S + G + V F + D A L NDYN IE+ K T +Y
Sbjct: 132 DDGSGGRRDSNLQRTGNDWIEVAFRTARAADPAAKLCYNDYN-IENWTWAK-TQGVY--- 186
Query: 355 LRQISEFPGNQNLRIGIGLESHFSTPNIPY---MRASIDTLGATGLPIWLTEVDVQSSPN 411
+ +F +G +SHF++ + PY R ++ A G+ + +TE+D+Q + +
Sbjct: 187 -NMVRDFKQRGVPIDCVGFQSHFNSGS-PYNSNFRTTLQNFAALGVDVAITELDIQGASS 244
Query: 412 QAQYLEQILREAHAHPKVQGIVVWA 436
+ + A + GI VW
Sbjct: 245 ST--YAAVTNDCLAVSRCLGITVWG 267
>pdb|2G3I|A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT
pdb|2G3J|A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT
pdb|2G4F|A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT
pdb|2G4F|B Chain B, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT
Length = 313
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 124/265 (46%), Gaps = 25/265 (9%)
Query: 184 FGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHN 243
FG AI L ++AY + F + E+EMK +TE G+ ++SA D + +A +
Sbjct: 16 FGTAIASGKLGDSAYTTIASREFNMVTAENEMKIDATEPQRGQFNFSAGDRVYNWAVQNG 75
Query: 244 IAVRGHNIFWDDPQYQPGWVNSLSPSDLSKAADKRINSVTSRYKGQVIAWDVVNENLHFS 303
VRGH + W Q PGW+ SLS S L +A IN V YKG++ WDVVNE FS
Sbjct: 76 KQVRGHTLAWHSAQ--PGWMQSLSGSTLRQAMIDHINGVMGHYKGKIAQWDVVNE--AFS 131
Query: 304 FFES---------KLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQK 354
S + G + V F + D A L NDYN IE+ K T +Y
Sbjct: 132 DDGSGGRRDSNLQRTGNDWIEVAFRTARAADPAAKLCYNDYN-IENWTWAK-TQGVY--- 186
Query: 355 LRQISEFPGNQNLRIGIGLESHFSTPNIPY---MRASIDTLGATGLPIWLTEVDVQSSPN 411
+ +F +G +SHF++ + PY R ++ A G+ + +TE+D+Q + +
Sbjct: 187 -NMVRDFKQRGVPIDCVGFQSHFNSGS-PYNSNFRTTLQNFAALGVDVAITELDIQGASS 244
Query: 412 QAQYLEQILREAHAHPKVQGIVVWA 436
+ + A + GI VW
Sbjct: 245 ST--YAAVTNDCLAVSRCLGITVWG 267
>pdb|2D1Z|A Chain A, Crystal Structure Of Catalytic-Site Mutant Xylanase From
Streptomyces Olivaceoviridis E-86
pdb|2D1Z|B Chain B, Crystal Structure Of Catalytic-Site Mutant Xylanase From
Streptomyces Olivaceoviridis E-86
pdb|2D20|A Chain A, Crystal Structure Of Michaelis Complex Of Catalytic-Site
Mutant Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D20|B Chain B, Crystal Structure Of Michaelis Complex Of Catalytic-Site
Mutant Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D22|A Chain A, Crystal Structure Of Covalent Glycosyl-Enzyme Intermediate
Of Catalytic-Site Mutant Xylanase From Streptomyces
Olivaceoviridis E-86
pdb|2D22|B Chain B, Crystal Structure Of Covalent Glycosyl-Enzyme Intermediate
Of Catalytic-Site Mutant Xylanase From Streptomyces
Olivaceoviridis E-86
pdb|2D23|A Chain A, Crystal Structure Of Ep Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D23|B Chain B, Crystal Structure Of Ep Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D24|A Chain A, Crystal Structure Of Es Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D24|B Chain B, Crystal Structure Of Es Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
Length = 436
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 123/265 (46%), Gaps = 25/265 (9%)
Query: 184 FGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHN 243
FG AI L ++AY + F + E+EMK +TE G+ ++SA D + +A +
Sbjct: 16 FGTAIASGKLGDSAYTTIASREFNMVTAENEMKIDATEPQRGQFNFSAGDRVYNWAVQNG 75
Query: 244 IAVRGHNIFWDDPQYQPGWVNSLSPSDLSKAADKRINSVTSRYKGQVIAWDVVNENLHFS 303
VRGH + W QPGW+ SLS S L +A IN V YKG++ WDVV+ FS
Sbjct: 76 KQVRGHTLAWHSQ--QPGWMQSLSGSTLRQAMIDHINGVMGHYKGKIAQWDVVSH--AFS 131
Query: 304 FFES---------KLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQK 354
S + G + V F + D A L NDYN IE+ K T +Y
Sbjct: 132 DDGSGGRRDSNLQRTGNDWIEVAFRTARAADPAAKLCYNDYN-IENWTWAK-TQGVY--- 186
Query: 355 LRQISEFPGNQNLRIGIGLESHFSTPNIPY---MRASIDTLGATGLPIWLTEVDVQSSPN 411
+ +F +G +SHF++ + PY R ++ A G+ + +TE+D+Q + +
Sbjct: 187 -NMVRDFKQRGVPIDCVGFQSHFNSGS-PYNSNFRTTLQNFAALGVDVAITELDIQGASS 244
Query: 412 QAQYLEQILREAHAHPKVQGIVVWA 436
+ + A + GI VW
Sbjct: 245 ST--YAAVTNDCLAVSRCLGITVWG 267
>pdb|1V6Y|A Chain A, Crystal Structure Of Chimeric Xylanase Between
Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas
Fimi Cex
Length = 324
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 125/270 (46%), Gaps = 28/270 (10%)
Query: 184 FGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHN 243
FG AI L ++AY + F + E+EMK +TE G+ ++SA D + +A +
Sbjct: 16 FGTAIASGKLGDSAYTTIASREFNMVTAENEMKIDATEPQRGQFNFSAGDRVYNWAVQNG 75
Query: 244 IAVRGHNIFWDDPQYQPGWVNSLSPSDLSKAADKRINSVTSRYKGQVIAWDVVNENLHFS 303
VRGH + W Q PGW+ SLS S L +A IN V YKG++ WDVVNE FS
Sbjct: 76 KQVRGHTLAWHSQQ--PGWMQSLSGSTLRQAMIDHINGVMGHYKGKIAQWDVVNE--AFS 131
Query: 304 FFES---------KLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQK 354
S + G + V F + D A L NDYN IE+ K T +Y
Sbjct: 132 DDGSGGRRDSNLQRTGNDWIEVAFRTARAADPAAKLCYNDYN-IENWTWAK-TQGVY--- 186
Query: 355 LRQISEFPGNQNLRIGIGLESHFSTPNIPY-MRASIDTLGATGLPIWLTEVDVQ-SSPNQ 412
+ +F +G +SH +P R ++ G+ + +TE+D++ +P+
Sbjct: 187 -NMVRDFKQRGVPIDCVGFQSHLIVGQVPGDFRQNLQRFADLGVDVRITELDIRMRTPSD 245
Query: 413 AQYL-------EQILREAHAHPKVQGIVVW 435
A L +++++ + QG+ VW
Sbjct: 246 ATKLATQAADYKKVVQACMQVTRCQGVTVW 275
>pdb|1TUX|A Chain A, High Resolution Crystal Structure Of A Thermostable
Xylanase From Thermoascus Aurantiacus
Length = 301
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 129/281 (45%), Gaps = 21/281 (7%)
Query: 184 FGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHN 243
FG A ++N LT + F E+ MKW +TE S G +++ +D ++ +A+ +
Sbjct: 18 FGVATDQNRLTTGKNAAIIQADFGQVTPENSMKWDATEPSQGNFNFAGADYLVNWAQQNG 77
Query: 244 IAVRGHNIFWDDPQYQPGWVNSLSPSD-LSKAADKRINSVTSRYKGQVIAWDVVNE---- 298
+RGH + W P WV S++ + L+ I ++ +RY G++ AWDVVNE
Sbjct: 78 KLIRGHTLVWH--SQLPSWVVSITDKNTLTNVMKNHITTIMTRYIGKIRAWDVVNEAFNE 135
Query: 299 --NLHFSFFESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLR 356
+L + F + +G++ + F + D L++NDYN S+ + ++K R
Sbjct: 136 DGSLRQTVFNNVIGEDYIPIAFRTARAADPNAKLYINDYNLDSASKPKTSAIVKRVKKWR 195
Query: 357 QISEFPGNQNLRIGIGLESHFSTPNIPYMRASIDTLGATGLP-IWLTEVDVQSSPNQAQY 415
+ P + GIG ++H S + A++ L + G P + +TE+D+ + Y
Sbjct: 196 A-AGVPID-----GIGSQTHLSAGQGASIDAALPNLASAGTPEVAITELDIAGA-TSTDY 248
Query: 416 LEQILREAHAHPKVQGIVVWAAWKPS---GCYRMCLTDNNF 453
++ ++ GI VW P L D NF
Sbjct: 249 VD-VVNACLDVDSCIGITVWGVADPDSWRASTTPLLFDGNF 288
>pdb|1B30|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
1,2- (4-Deoxy-Beta-L-Threo-Hex-4-Enopyranosyluronic
Acid)-Beta- 1,4-Xylotriose)
pdb|1B31|A Chain A, Xylanase From Penicillium Simplicissimum, Native With
Peg200 As Cryoprotectant
pdb|1B3V|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylose
pdb|1B3W|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylobiose
pdb|1B3X|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylotriose
pdb|1B3Y|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylotetraose
pdb|1B3Z|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylopentaose
pdb|1BG4|A Chain A, Xylanase From Penicillium Simplicissimum
Length = 302
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 118/239 (49%), Gaps = 22/239 (9%)
Query: 212 EDEMKWYSTEASPGREDYSASDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVNSLSPSD- 270
E+ MKW +TE + G+ +S SD ++ FA+++ +RGH + W PGWV+S++ +
Sbjct: 47 ENSMKWDATEPNRGQFTFSGSDYLVNFAQSNGKLIRGHTLVWHSQ--LPGWVSSITDKNT 104
Query: 271 LSKAADKRINSVTSRYKGQVIAWDVVNE------NLHFSFFESKLGQNASGVFFNRVHSL 324
L I +V +RYKG++ AWDV+NE +L S F + +G++ + F S+
Sbjct: 105 LISVLKNHITTVMTRYKGKIYAWDVLNEIFNEDGSLRNSVFYNVIGEDYVRIAFETARSV 164
Query: 325 DGATTLFMNDYNTIEDSRDGKATPAMYLQKLRQISEFPGNQNLRIGIGLESHFSTPNIPY 384
D L++NDYN ++ + K + K + P + GIG ++H
Sbjct: 165 DPNAKLYINDYN-LDSAGYSKVNGMVSHVKKWLAAGIPID-----GIGSQTHLGAGAGSA 218
Query: 385 MRASIDTLGATGLP-IWLTEVDV--QSSPNQAQYLEQILREAHAHPKVQGIVVWAAWKP 440
+ +++ L + G I +TE+D+ SS + + L +A K GI VW P
Sbjct: 219 VAGALNALASAGTKEIAITELDIAGASSTDYVNVVNACLNQA----KCVGITVWGVADP 273
>pdb|1K6A|A Chain A, Structural Studies On The Mobility In The Active Site Of
The Thermoascus Aurantiacus Xylanase I
Length = 303
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 135/284 (47%), Gaps = 27/284 (9%)
Query: 184 FGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHN 243
FG A ++N LT + F E+ MKW +TE S G +++ +D ++ +A+ +
Sbjct: 18 FGVATDQNRLTTGKNAAIIQADFGQVTPENSMKWDATEPSQGNFNFAGADYLVNWAQQNG 77
Query: 244 IAVRGHNIFWDDPQYQPGWVNSLSPSD-LSKAADKRINSVTSRYKGQVIAWDVVNE---- 298
+RGH + W P WV+S++ + L+ I ++ +RYKG++ AWDVVNE
Sbjct: 78 KLIRGHTLVWH--SQLPSWVSSITDKNTLTNVMKNHITTLMTRYKGKIRAWDVVNEAFNE 135
Query: 299 --NLHFSFFESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLR 356
+L + F + +G++ + F + D L++NDYN DS T A+ + +++
Sbjct: 136 DGSLRQTVFLNVIGEDYIPIAFQTARAADPNAKLYINDYNL--DSASYPKTQAI-VNRVK 192
Query: 357 Q--ISEFPGNQNLRIGIGLESHFSTPNIPYMRASIDTLGATGLP-IWLTEVDVQ-SSPNQ 412
Q + P + GIG ++H S + ++ L + G P + +TE+DV +SP
Sbjct: 193 QWRAAGVPID-----GIGSQTHLSAGQGAGVLQALPLLASAGTPEVAITELDVAGASP-- 245
Query: 413 AQYLEQILREAHAHPKVQGIVVWAAWKPS---GCYRMCLTDNNF 453
Y+ + + V GI VW P L D NF
Sbjct: 246 TDYVNVVNACLNVQSCV-GITVWGVADPDSWRASTTPLLFDGNF 288
>pdb|1I1W|A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable
Xylanase From Thermoascus Aurantiacus
pdb|1I1X|A Chain A, 1.11 A Atomic Resolution Structure Of A Thermostable
Xylanase From Thermoascus Aurantiacus
Length = 303
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 130/281 (46%), Gaps = 21/281 (7%)
Query: 184 FGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHN 243
FG A ++N LT + F E+ MKW +TE S G +++ +D ++ +A+ +
Sbjct: 18 FGVATDQNRLTTGKNAAIIQANFGQVTPENSMKWDATEPSQGNFNFAGADYLVNWAQQNG 77
Query: 244 IAVRGHNIFWDDPQYQPGWVNSLSPSD-LSKAADKRINSVTSRYKGQVIAWDVVNE---- 298
+RGH + W P WV+S++ + L+ I ++ +RYKG++ AWDVVNE
Sbjct: 78 KLIRGHTLVWH--SQLPSWVSSITDKNTLTNVMKNHITTLMTRYKGKIRAWDVVNEAFNE 135
Query: 299 --NLHFSFFESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLR 356
+L + F + +G++ + F + D L++NDYN DS T A+ +
Sbjct: 136 DGSLRQTVFLNVIGEDYIPIAFQTARAADPNAKLYINDYNL--DSASYPKTQAI----VN 189
Query: 357 QISEFPGNQNLRIGIGLESHFSTPNIPYMRASIDTLGATGLP-IWLTEVDVQSSPNQAQY 415
++ ++ GIG ++H S + ++ L + G P + +TE+DV + + Y
Sbjct: 190 RVKKWRAAGVPIDGIGSQTHLSAGQGASVLQALPLLASAGTPEVAITELDV-AGASSTDY 248
Query: 416 LEQILREAHAHPKVQGIVVWAAWKPS---GCYRMCLTDNNF 453
+ ++ GI VW P L D NF
Sbjct: 249 VN-VVNACLNVSSCVGITVWGVADPDSWRASTTPLLFDGNF 288
>pdb|1GOK|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-
Crystal Form Ii
pdb|1GOO|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus -
Cryocooled Glycerol Complex
pdb|1GOM|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus -
Crystal Form I
pdb|1GOR|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-
Xylobiose Complex At 100 K
pdb|1GOQ|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-Room
Temperature Xylobiose Complex
Length = 303
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 135/284 (47%), Gaps = 27/284 (9%)
Query: 184 FGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHN 243
FG A ++N LT + F E+ MKW +TE S G +++ +D ++ +A+ +
Sbjct: 18 FGVATDQNRLTTGKNAAIIQADFGQVTPENSMKWDATEPSQGNFNFAGADYLVNWAQQNG 77
Query: 244 IAVRGHNIFWDDPQYQPGWVNSLSPSD-LSKAADKRINSVTSRYKGQVIAWDVVNE---- 298
+RGH + W P WV+S++ + L+ I ++ +RYKG++ AWDVVNE
Sbjct: 78 KLIRGHTLVWH--SQLPSWVSSITDKNTLTNVMKNHITTLMTRYKGKIRAWDVVNEAFNE 135
Query: 299 --NLHFSFFESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLR 356
+L + F + +G++ + F + D L++NDYN DS T A+ + +++
Sbjct: 136 DGSLRQTVFLNVIGEDYIPIAFQTARAADPNAKLYINDYNL--DSASYPKTQAI-VNRVK 192
Query: 357 Q--ISEFPGNQNLRIGIGLESHFSTPNIPYMRASIDTLGATGLP-IWLTEVDVQ-SSPNQ 412
Q + P + GIG ++H S + ++ L + G P + +TE+DV +SP
Sbjct: 193 QWRAAGVPID-----GIGSQTHLSAGQGAGVLQALPLLASAGTPEVAITELDVAGASP-- 245
Query: 413 AQYLEQILREAHAHPKVQGIVVWAAWKPS---GCYRMCLTDNNF 453
Y+ + + V GI VW P L D NF
Sbjct: 246 TDYVNVVNACLNVQSCV-GITVWGVADPDSWRASTTPLLFDGNF 288
>pdb|2BNJ|A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes
Arabinose Decorations Of Xylan As Significant Substrate
Specificity Determinants
Length = 303
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 131/282 (46%), Gaps = 23/282 (8%)
Query: 184 FGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHN 243
FG A ++N LT + F E+ MKW +TE S G +++ +D ++ +A+ +
Sbjct: 18 FGVATDQNRLTTGKNAAIIQANFGQVTPENSMKWDATEPSQGNFNFAGADYLVNWAQQNG 77
Query: 244 IAVRGHNIFWDDPQYQPGWVNSLSPSD-LSKAADKRINSVTSRYKGQVIAWDVVNE---- 298
+RGH + W P WV+S++ + L+ I ++ +RYKG++ AWDVVNE
Sbjct: 78 KLIRGHTLVWH--SQLPSWVSSITDKNTLTNVMKNHITTLMTRYKGKIRAWDVVNEAFNE 135
Query: 299 --NLHFSFFESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLR 356
+L + F + +G++ + F + D L++NDYN DS T A+ +
Sbjct: 136 DGSLRQTVFLNVIGEDYIPIAFQTARAADPNAKLYINDYNL--DSASYPKTQAI----VN 189
Query: 357 QISEFPGNQNLRIGIGLESHFSTPNIPYMRASIDTLGATGLP-IWLTEVDVQ-SSPNQAQ 414
++ ++ GIG ++H S + ++ L + G P + +TE+DV +SP
Sbjct: 190 RVKKWRAAGVPIDGIGSQTHLSAGQGAGVLQALPLLASAGTPEVAITELDVAGASP--TD 247
Query: 415 YLEQILREAHAHPKVQGIVVWAAWKPS---GCYRMCLTDNNF 453
Y+ ++ GI VW P L D NF
Sbjct: 248 YVN-VVNACLNVSSCVGITVWGVADPDSWRASTTPLLFDGNF 288
>pdb|1FH7|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Inhibitor Deoxynojirimycin
pdb|1FH8|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Isofagomine Inhibitor
pdb|1FH9|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Lactam Oxime Inhibitor
pdb|1FHD|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Imidazole Inhibitor
pdb|1J01|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Inhibitor Isofagomine Lactam
pdb|1EXP|A Chain A, Beta-1,4-Glycanase Cex-Cd
pdb|2EXO|A Chain A, Crystal Structure Of The Catalytic Domain Of The Beta-1,4-
Glycanase Cex From Cellulomonas Fimi
pdb|2XYL|A Chain A, Cellulomonas Fimi XylanaseCELLULASE COMPLEXED WITH
2-Deoxy- 2-Fluoro-Xylobiose
Length = 312
Score = 88.2 bits (217), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 114/268 (42%), Gaps = 25/268 (9%)
Query: 184 FGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHN 243
FG A++ N L+ Y+ S F + E+ MKW +TE S + A D + +A +
Sbjct: 15 FGFALDPNRLSEAQYKAIADSEFNLVVAENAMKWDATEPSQNSFSFGAGDRVASYAADTG 74
Query: 244 IAVRGHNIFWDDPQYQPGWVNSLSPSDLSKAADKRINSVTSRYKGQVIAWDVVNENL--- 300
+ GH + W P W +L+ S A + V ++G+V +WDVVNE
Sbjct: 75 KELYGHTLVWH--SQLPDWAKNLNGSAFESAMVNHVTKVADHFEGKVASWDVVNEAFADG 132
Query: 301 ----HFSFFESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLR 356
S F+ KLG F + D L +NDYN +G + L L
Sbjct: 133 GGRRQDSAFQQKLGNGYIETAFRAARAADPTAKLCINDYNV-----EGINAKSNSLYDL- 186
Query: 357 QISEFPGNQNLRIGIGLESHFSTPNIP-YMRASIDTLGATGLPIWLTEVDVQ-SSPNQAQ 414
+ +F +G +SH +P R ++ G+ + +TE+D++ +P+ A
Sbjct: 187 -VKDFKARGVPLDCVGFQSHLIVGQVPGDFRQNLQRFADLGVDVRITELDIRMRTPSDAT 245
Query: 415 YL-------EQILREAHAHPKVQGIVVW 435
L +++++ + QG+ VW
Sbjct: 246 KLATQAADYKKVVQACMQVTRCQGVTVW 273
>pdb|3CUF|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Cellobiose-Like Isofagomine
pdb|3CUG|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Cellotetraose-Like Isofagomine
pdb|3CUH|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Cellotriose-Like Isofagomine
pdb|3CUI|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Sulfur Substituted Beta-1,4 Xylotetraose
pdb|3CUJ|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Sulfur Substituted Beta-1,4 Xylopentaose
Length = 315
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 114/268 (42%), Gaps = 25/268 (9%)
Query: 184 FGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHN 243
FG A++ N L+ Y+ S F + E+ MKW +TE S + A D + +A +
Sbjct: 15 FGFALDPNRLSEAQYKAIADSEFNLVVAENAMKWDATEPSQNSFSFGAGDRVASYAADTG 74
Query: 244 IAVRGHNIFWDDPQYQPGWVNSLSPSDLSKAADKRINSVTSRYKGQVIAWDVVNENL--- 300
+ GH + W P W +L+ S A + V ++G+V +WDVVNE
Sbjct: 75 KELYGHTLVWH--SQLPDWAKNLNGSAFESAMVNHVTKVADHFEGKVASWDVVNEAFADG 132
Query: 301 ----HFSFFESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLR 356
S F+ KLG F + D L +NDYN +G + L L
Sbjct: 133 GGRRQDSAFQQKLGNGYIETAFRAARAADPTAKLCINDYNV-----EGINAKSNSLYDL- 186
Query: 357 QISEFPGNQNLRIGIGLESHFSTPNIP-YMRASIDTLGATGLPIWLTEVDVQ-SSPNQAQ 414
+ +F +G +SH +P R ++ G+ + +TE+D++ +P+ A
Sbjct: 187 -VKDFKARGVPLDCVGFQSHLIVGQVPGDFRQNLQRFADLGVDVRITELDIRMRTPSDAT 245
Query: 415 YL-------EQILREAHAHPKVQGIVVW 435
L +++++ + QG+ VW
Sbjct: 246 KLATQAADYKKVVQACMQVTRCQGVTVW 273
>pdb|1XYZ|A Chain A, A Common Protein Fold And Similar Active Site In Two
Distinct Families Of Beta-Glycanases
pdb|1XYZ|B Chain B, A Common Protein Fold And Similar Active Site In Two
Distinct Families Of Beta-Glycanases
Length = 347
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 131/311 (42%), Gaps = 42/311 (13%)
Query: 158 IQAVDKQGKPLQNANISIEQKQLR-------FPFGCAINKNILTNT--AYQNWFTSRFKV 208
+Q + P Q +I LR G +N N+ Y + F +
Sbjct: 6 VQTPNPSVTPTQTPIPTISGNALRDYAEARGIKIGTCVNYPFYNNSDPTYNSILQREFSM 65
Query: 209 TAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVN--SL 266
E+EMK+ + + D+S D +L FA+ + + +RGH + W + P W+ +
Sbjct: 66 VVCENEMKFDALQPRQNVFDFSKGDQLLAFAERNGMQMRGHTLIWHN--QNPSWLTNGNW 123
Query: 267 SPSDLSKAADKRINSVTSRYKGQVIAWDVVNE-------NLHFSFFESKLGQNASGVFFN 319
+ L I +V + YKG+++ WDV NE L S + + +GQ+ F
Sbjct: 124 NRDSLLAVMKNHITTVMTHYKGKIVEWDVANECMDDSGNGLRSSIWRNVIGQDYLDYAFR 183
Query: 320 RVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLRQISEFPGNQNLRI-GIGLESHFS 378
D LF NDYN IED G + A++ ++ + E + + I G+G + HF
Sbjct: 184 YAREADPDALLFYNDYN-IEDL--GPKSNAVF-NMIKSMKE----RGVPIDGVGFQCHFI 235
Query: 379 TPNIPYMRASID----TLGATGLPIWLTEVDVQ--SSPN-------QAQYLEQILREAHA 425
P ASID G+ + TE+D++ S N QA +++++ A
Sbjct: 236 NGMSPEYLASIDQNIKRYAEIGVIVSFTEIDIRIPQSENPATAFQVQANNYKELMKICLA 295
Query: 426 HPKVQGIVVWA 436
+P V+W
Sbjct: 296 NPNCNTFVMWG 306
>pdb|2HIS|A Chain A, Cellulomonas Fimi XylanaseCELLULASE DOUBLE MUTANT
E127aH205N WITH COVALENT CELLOBIOSE
Length = 312
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 113/268 (42%), Gaps = 25/268 (9%)
Query: 184 FGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHN 243
FG A++ N L+ Y+ S F + E+ MKW +TE S + A D + +A +
Sbjct: 15 FGFALDPNRLSEAQYKAIADSEFNLVVAENAMKWDATEPSQNSFSFGAGDRVASYAADTG 74
Query: 244 IAVRGHNIFWDDPQYQPGWVNSLSPSDLSKAADKRINSVTSRYKGQVIAWDVVNENL--- 300
+ GH + W P W +L+ S A + V ++G+V +WDVVN
Sbjct: 75 KELYGHTLVWH--SQLPDWAKNLNGSAFESAMVNHVTKVADHFEGKVASWDVVNAAFADG 132
Query: 301 ----HFSFFESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLR 356
S F+ KLG F + D L +NDYN +G + L L
Sbjct: 133 GGRRQDSAFQQKLGNGYIETAFRAARAADPTAKLCINDYNV-----EGINAKSNSLYDL- 186
Query: 357 QISEFPGNQNLRIGIGLESHFSTPNIP-YMRASIDTLGATGLPIWLTEVDVQ-SSPNQAQ 414
+ +F +G +S+ +P R ++ G+ + +TE+D++ +P+ A
Sbjct: 187 -VKDFKARGVPLDCVGFQSNLIVGQVPGDFRQNLQRFADLGVDVRITELDIRMRTPSDAT 245
Query: 415 YL-------EQILREAHAHPKVQGIVVW 435
L +++++ + QG+ VW
Sbjct: 246 KLATQAADYKKVVQACMQVTRCQGVTVW 273
>pdb|3O2L|A Chain A, Crystal Structure Of An Inactive Kemp Elimination Design
Hg-1
Length = 317
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 116/233 (49%), Gaps = 20/233 (8%)
Query: 184 FGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHN 243
FG ++N LT + F + MKW +TE S G +++ +D ++ +A+ +
Sbjct: 19 FGVMTDQNRLTTGKNAAIIQADFGQVTPMNSMKWDATEPSQGNFNFAGADYLVNWAQQNG 78
Query: 244 IAVRGHNIFWDDPQYQPGWVNSLSPSD-LSKAADKRINSVTSRYKGQVIAWDVVNE---- 298
+RGH + Y P WV+S++ + L+ I ++ +RYKG++ AWDVVNE
Sbjct: 79 KLIRGHTLVGH--FYLPSWVSSITDKNTLTNVMKNHITTLMTRYKGKIRAWDVVNEAFNE 136
Query: 299 --NLHFSFFESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLR 356
+L + F + +G++ + F + D L++NDYN DS T A+ + +++
Sbjct: 137 DGSLRQTVFLNVIGEDYIPIAFQTARAADPNAKLYINDYNL--DSASYPKTQAI-VNRVK 193
Query: 357 Q--ISEFPGNQNLRIGIGLESHFSTPNIPYMRASIDTLGATGLP-IWLTEVDV 406
Q + P + GIG ++H S + ++ L + G P + +TE++V
Sbjct: 194 QWRAAGVPID-----GIGSQTHLSAGQGAGVLQALPLLASAGTPEVAITELNV 241
>pdb|2CNC|A Chain A, Family 10 Xylanase
Length = 386
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 112/268 (41%), Gaps = 28/268 (10%)
Query: 164 QGKPLQNANISIEQKQLR------FPFGCAINKNILT--NTAYQNWFTSRFKVTAFEDEM 215
Q L A + EQ L+ F G A+N I + + F E+ M
Sbjct: 20 QASKLAAATKAAEQTGLKSAYKDNFLIGAALNATIASGADERLNTLIAKEFNSITPENCM 79
Query: 216 KWYSTEASPGREDYSASDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVNS----LSPSDL 271
KW + G+ ++ +DA + F HN+ + GH + W + + N+ +S + L
Sbjct: 80 KWGVLRDAQGQWNWKDADAFVAFGTKHNLHMVGHTLVWHSQIHDEVFKNADGSYISKAAL 139
Query: 272 SKAADKRINSVTSRYKGQVIAWDVVNE------NLHFSFFESKLGQNASGVFFNRVHSLD 325
K ++ I ++ RYKG++ AWDVVNE + S + +G + F + +D
Sbjct: 140 QKKMEEHITTLAGRYKGKLAAWDVVNEAVGDDLKMRDSHWYKIMGDDFIYNAFTLANEVD 199
Query: 326 GATTLFMNDYNTIEDSRDGKATPAMYLQKLRQISEFPGNQNLRIGIGLESHF--STPNIP 383
L NDYN R GK + + + Q P + G+G++ H TP I
Sbjct: 200 PKAHLMYNDYNI---ERTGKREATVEMIERLQKRGMPIH-----GLGIQGHLGIDTPPIA 251
Query: 384 YMRASIDTLGATGLPIWLTEVDVQSSPN 411
+ SI GL + T +DV P+
Sbjct: 252 EIEKSIIAFAKLGLRVHFTSLDVDVLPS 279
>pdb|1UQY|A Chain A, Xylanase Xyn10b Mutant (E262s) From Cellvibrio Mixtus In
Complex With Xylopentaose
pdb|1UQZ|A Chain A, Xylanase Xyn10b Mutant (E262s) From Cellvibrio Mixtus In
Complex With 4-O-Methyl Glucuronic Acid
pdb|1UR1|A Chain A, Xylanase Xyn10b Mutant (E262s) From Cellvibrio Mixtus In
Complex With Arabinofuranose Alpha-1,3 Linked To
Xylobiose
pdb|1UR2|A Chain A, Xylanase Xyn10b Mutant (E262s) From Cellvibrio Mixtus In
Complex With Arabinofuranose Alpha 1,3 Linked To
Xylotriose
Length = 378
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 112/268 (41%), Gaps = 28/268 (10%)
Query: 164 QGKPLQNANISIEQKQLR------FPFGCAINKNILT--NTAYQNWFTSRFKVTAFEDEM 215
Q L A + EQ L+ F G A+N I + + F E+ M
Sbjct: 11 QASKLAAATKAAEQTGLKSAYKDNFLIGAALNATIASGADERLNTLIAKEFNSITPENCM 70
Query: 216 KWYSTEASPGREDYSASDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVNS----LSPSDL 271
KW + G+ ++ +DA + F HN+ + GH + W + + N+ +S + L
Sbjct: 71 KWGVLRDAQGQWNWKDADAFVAFGTKHNLHMVGHTLVWHSQIHDEVFKNADGSYISKAAL 130
Query: 272 SKAADKRINSVTSRYKGQVIAWDVVNE------NLHFSFFESKLGQNASGVFFNRVHSLD 325
K ++ I ++ RYKG++ AWDVVNE + S + +G + F + +D
Sbjct: 131 QKKMEEHITTLAGRYKGKLAAWDVVNEAVGDDLKMRDSHWYKIMGDDFIYNAFTLANEVD 190
Query: 326 GATTLFMNDYNTIEDSRDGKATPAMYLQKLRQISEFPGNQNLRIGIGLESHF--STPNIP 383
L NDYN R GK + + + Q P + G+G++ H TP I
Sbjct: 191 PKAHLMYNDYNI---ERTGKREATVEMIERLQKRGMPIH-----GLGIQGHLGIDTPPIA 242
Query: 384 YMRASIDTLGATGLPIWLTEVDVQSSPN 411
+ SI GL + T +DV P+
Sbjct: 243 EIEKSIIAFAKLGLRVHFTSLDVDVLPS 270
>pdb|1N82|A Chain A, The High-Resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|1N82|B Chain B, The High-Resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|3MUA|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MUA|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 111/240 (46%), Gaps = 26/240 (10%)
Query: 182 FPFGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKN 241
F G A+N +T + E+ MK+ + G+ + +D ++ FA +
Sbjct: 16 FRIGAAVNP--VTIEMQKQLLIDHVNSITAENHMKFEHLQPEEGKFTFQEADRIVDFACS 73
Query: 242 HNIAVRGHNIFWD----DPQYQPGWVNSLSPSDLSKAADKRINSVTSRYKGQVIAWDVVN 297
H +AVRGH + W D +Q G + +S L + I++V RYKG++ WDV+N
Sbjct: 74 HRMAVRGHTLVWHNQTPDWVFQDGQGHFVSRDVLLERMKCHISTVVRRYKGKIYCWDVIN 133
Query: 298 EN--------LHFSFFESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPA 349
E L S + +G + F + D LF NDYN + K
Sbjct: 134 EAVADEGDELLRPSKWRQIIGDDFMEQAFLYAYEADPDALLFYNDYNECFPEKREKIFA- 192
Query: 350 MYLQKLRQISEFPGNQNLRI-GIGLESHFST--PNIPYMRASIDTLGATGLPIWLTEVDV 406
++ LR ++ + I GIG+++H+S P++ +RA+I+ + G+ + +TE+DV
Sbjct: 193 -LVKSLR-------DKGIPIHGIGMQAHWSLTRPSLDEIRAAIERYASLGVVLHITELDV 244
>pdb|2Q8X|A Chain A, The High-resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|2Q8X|B Chain B, The High-resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|3MSD|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MSD|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MSG|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MSG|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 111/240 (46%), Gaps = 26/240 (10%)
Query: 182 FPFGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKN 241
F G A+N +T + E+ MK+ + G+ + +D ++ FA +
Sbjct: 16 FRIGAAVNP--VTIEMQKQLLIDHVNSITAENHMKFEHLQPEEGKFTFQEADRIVDFACS 73
Query: 242 HNIAVRGHNIFWD----DPQYQPGWVNSLSPSDLSKAADKRINSVTSRYKGQVIAWDVVN 297
H +AVRGH + W D +Q G + +S L + I++V RYKG++ WDV+N
Sbjct: 74 HRMAVRGHTLVWHNQTPDWVFQDGQGHFVSRDVLLERMKCHISTVVRRYKGKIYCWDVIN 133
Query: 298 EN--------LHFSFFESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPA 349
E L S + +G + F + D LF NDYN + K
Sbjct: 134 EAVADEGNELLRPSKWRQIIGDDFMEQAFLYAYEADPDALLFYNDYNECFPEKREKIFA- 192
Query: 350 MYLQKLRQISEFPGNQNLRI-GIGLESHFST--PNIPYMRASIDTLGATGLPIWLTEVDV 406
++ LR ++ + I GIG+++H+S P++ +RA+I+ + G+ + +TE+DV
Sbjct: 193 -LVKSLR-------DKGIPIHGIGMQAHWSLTRPSLDEIRAAIERYASLGVVLHITELDV 244
>pdb|3NIY|A Chain A, Crystal Structure Of Native Xylanase 10b From Thermotoga
Petrophila Rku-1
pdb|3NIY|B Chain B, Crystal Structure Of Native Xylanase 10b From Thermotoga
Petrophila Rku-1
pdb|3NJ3|A Chain A, Crystal Structure Of Xylanase 10b From Thermotoga
Petrophila Rku-1 In Complex With Xylobiose
pdb|3NJ3|B Chain B, Crystal Structure Of Xylanase 10b From Thermotoga
Petrophila Rku-1 In Complex With Xylobiose
Length = 341
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 130/316 (41%), Gaps = 39/316 (12%)
Query: 168 LQNANISIEQKQLRFPFGCAINKNILT---NTAYQNWFTSRFKVTAFEDEMKWYSTEASP 224
+QN ++ ++L G A N + Y F + E++MKW +
Sbjct: 17 MQNVSLRELAEKLNIYIGFAAINNFWSLSDEEKYMEVARREFNILTPENQMKWDTIHPER 76
Query: 225 GREDYSASDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVN--SLSPSDLSKAADKRINSV 282
R +++ ++ ++FA+ +N+ V GH + W + PGW+ + +L + I +V
Sbjct: 77 DRYNFTPAEKHVEFAEENNMIVHGHTLVWHNQ--LPGWITGREWTKEELLNVLEDHIKTV 134
Query: 283 TSRYKGQVIAWDVVNENL------HFSFFESKLGQNASGVFFNRVHSLDGATTLFMNDYN 336
S +KG+V WDVVNE + S + +G F D L NDY+
Sbjct: 135 VSHFKGRVKIWDVVNEAVSDSGTYRESVWYKTIGPEYIEKAFRWTKEADPDAILIYNDYS 194
Query: 337 TIEDSRDGKATPAMYLQKLRQISEFPGNQNLRIGIGLESHFSTPNIPY--MRASIDTLGA 394
E + M +++L++ P + GIG + H + Y R +++
Sbjct: 195 IEEINAKSNFVYNM-IKELKE-KGVPVD-----GIGFQMHIDYRGLNYDSFRRNLERFAK 247
Query: 395 TGLPIWLTEVDVQSS---------PNQAQYLEQILREAHAHPKVQGIVVWA-----AWKP 440
GL I++TE+DV+ QA+ +I +P V+ I W +W P
Sbjct: 248 LGLQIYITEMDVRIPLSGSEDYYLKKQAEICAKIFDICLDNPAVKAIQFWGFTDKYSWVP 307
Query: 441 ---SGCYRMCLTDNNF 453
G + L D N+
Sbjct: 308 GFFKGYGKALLFDENY 323
>pdb|1US3|A Chain A, Native Xylanase10c From Cellvibrio Japonicus
Length = 530
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 112/253 (44%), Gaps = 39/253 (15%)
Query: 182 FPFGCAINK------NILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAM 235
FP G A++ N+LTN+ Q F + MK + + G +++ +DA
Sbjct: 175 FPIGVAVSNTDSATYNLLTNSREQAVVKKHFNHLTAGNIMKMSYMQPTEGNFNFTNADAF 234
Query: 236 LQFAKNHNIAVRGHNIFWDD----PQYQPGWVNSLSPSDLSKAADKRINSVTSRY--KGQ 289
+ +A +N+ V GH + W P + W S D A D I ++ Y KG
Sbjct: 235 VDWATENNMTVHGHALVWHSDYQVPNFMKNWAG--SAEDFLAALDTHITTIVDHYEAKGN 292
Query: 290 VIAWDVVNENL------HF----SFFESKLGQNASGVFFNR----VHSLDGATTLFMNDY 335
+++WDVVNE + +F S F K G S V+ R + D A L+ NDY
Sbjct: 293 LVSWDVVNEAIDDNSPANFRTTDSAFYVKSGN--SSVYIERAFQTARAADPAVILYYNDY 350
Query: 336 NTIEDSRDGKATPAMYLQKLRQISEFPGNQNLRIGIGLESH--FSTPNIPYMRASIDTLG 393
N + + K T + + K Q P + G+G + H + P+I + A++ +
Sbjct: 351 NI--EQNNAKTTKMVDMVKDFQARSIPID-----GVGFQMHVCMNYPSIANISAAMKKVV 403
Query: 394 ATGLPIWLTEVDV 406
GL + +TE+DV
Sbjct: 404 DLGLLVKITELDV 416
>pdb|1VBR|A Chain A, Crystal Structure Of Complex Xylanase 10b From Thermotoga
Maritima With Xylobiose
pdb|1VBR|B Chain B, Crystal Structure Of Complex Xylanase 10b From Thermotoga
Maritima With Xylobiose
pdb|1VBU|A Chain A, Crystal Structure Of Native Xylanase 10b From Thermotoga
Maritima
pdb|1VBU|B Chain B, Crystal Structure Of Native Xylanase 10b From Thermotoga
Maritima
Length = 328
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 125/294 (42%), Gaps = 40/294 (13%)
Query: 206 FKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVN- 264
F + E++MKW + R +++ ++ ++FA+ +++ V GH + W + PGW+
Sbjct: 42 FNILTPENQMKWDTIHPERDRYNFTPAEKHVEFAEENDMIVHGHTLVWHNQ--LPGWITG 99
Query: 265 -SLSPSDLSKAADKRINSVTSRYKGQVIAWDVVNENL------HFSFFESKLGQNASGVF 317
+ +L + I +V S +KG+V WDVVNE + S + +G
Sbjct: 100 REWTKEELLNVLEDHIKTVVSHFKGRVKIWDVVNEAVSDSGTYRESVWYKTIGPEYIEKA 159
Query: 318 FNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLRQISEFPGNQNLRIGIGLESHF 377
F D L NDY+ E + M +++L++ P + GIG + H
Sbjct: 160 FRWAKEADPDAILIYNDYSIEEINAKSNFVYNM-IKELKE-KGVPVD-----GIGFQMHI 212
Query: 378 STPNIPY--MRASIDTLGATGLPIWLTEVDVQSS---------PNQAQYLEQILREAHAH 426
+ Y R +++ GL I++TE+DV+ QA+ +I +
Sbjct: 213 DYRGLNYDSFRRNLERFAKLGLQIYITEMDVRIPLSGSEEYYLKKQAEVCAKIFDICLDN 272
Query: 427 PKVQGIVVWA-----AWKP---SGCYRMCLTDNNFK----NLATGDVVDKLLHE 468
P V+ I W +W P G + L D N+ A +V++K + E
Sbjct: 273 PAVKAIQFWGFTDKYSWVPGFFKGYGKALLFDENYNPKPCYYAIKEVLEKKIEE 326
>pdb|3MS8|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MS8|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 110/240 (45%), Gaps = 26/240 (10%)
Query: 182 FPFGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKN 241
F G A+N +T + E+ MK+ + G+ + +D ++ FA +
Sbjct: 16 FRIGAAVNP--VTIEMQKQLLIDHVNSITAENHMKFEHLQPEEGKFTFQEADRIVDFACS 73
Query: 242 HNIAVRGHNIFWD----DPQYQPGWVNSLSPSDLSKAADKRINSVTSRYKGQVIAWDVVN 297
H +AVRGH + W D +Q G + +S L + I++V RYKG++ WDV+N
Sbjct: 74 HRMAVRGHTLVWHNQTPDWVFQDGQGHFVSRDVLLERMKCHISTVVRRYKGKIYCWDVIN 133
Query: 298 EN--------LHFSFFESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPA 349
E L S + +G + F + D LF NDYN + K
Sbjct: 134 EAVADEGNELLRPSKWRQIIGDDFMEQAFLYAYEADPDALLFYNDYNECFPEKREKIFA- 192
Query: 350 MYLQKLRQISEFPGNQNLRI-GIGLESHFST--PNIPYMRASIDTLGATGLPIWLTEVDV 406
++ LR ++ + I GIG+++H+S P++ +RA+I+ + G+ + +T +DV
Sbjct: 193 -LVKSLR-------DKGIPIHGIGMQAHWSLTRPSLDEIRAAIERYASLGVVLHITALDV 244
>pdb|3MUI|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MUI|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 110/240 (45%), Gaps = 26/240 (10%)
Query: 182 FPFGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKN 241
F G A+N +T + E+ MK+ + G+ + +D ++ FA +
Sbjct: 16 FRIGAAVNP--VTIEMQKQLLIDHVNSITAENHMKFEHLQPEEGKFTFQEADRIVDFACS 73
Query: 242 HNIAVRGHNIFWD----DPQYQPGWVNSLSPSDLSKAADKRINSVTSRYKGQVIAWDVVN 297
H +AVRGH + W D +Q G + +S L + I++V RYKG++ WDV+N
Sbjct: 74 HRMAVRGHTLVWHNQTPDWVFQDGQGHFVSRDVLLERMKCHISTVVRRYKGKIYCWDVIN 133
Query: 298 EN--------LHFSFFESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPA 349
E L S + +G + F + D LF NDYN + K
Sbjct: 134 EAVADEGDELLRPSKWRQIIGDDFMEQAFLYAYEADPDALLFYNDYNECFPEKREKIFA- 192
Query: 350 MYLQKLRQISEFPGNQNLRI-GIGLESHFST--PNIPYMRASIDTLGATGLPIWLTEVDV 406
++ LR ++ + I GIG+++H+S P++ +RA+I+ + G+ + +T +DV
Sbjct: 193 -LVKSLR-------DKGIPIHGIGMQAHWSLTRPSLDEIRAAIERYASLGVVLHITALDV 244
>pdb|1US2|A Chain A, Xylanase10c (Mutant E385a) From Cellvibrio Japonicus In
Complex With Xylopentaose
Length = 530
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 111/253 (43%), Gaps = 39/253 (15%)
Query: 182 FPFGCAINK------NILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAM 235
FP G A++ N+LTN+ Q F + MK + + G +++ +DA
Sbjct: 175 FPIGVAVSNTDSATYNLLTNSREQAVVKKHFNHLTAGNIMKMSYMQPTEGNFNFTNADAF 234
Query: 236 LQFAKNHNIAVRGHNIFWDD----PQYQPGWVNSLSPSDLSKAADKRINSVTSRY--KGQ 289
+ +A +N+ V GH + W P + W S D A D I ++ Y KG
Sbjct: 235 VDWATENNMTVHGHALVWHSDYQVPNFMKNWAG--SAEDFLAALDTHITTIVDHYEAKGN 292
Query: 290 VIAWDVVNENL------HF----SFFESKLGQNASGVFFNR----VHSLDGATTLFMNDY 335
+++WDVVN + +F S F K G S V+ R + D A L+ NDY
Sbjct: 293 LVSWDVVNAAIDDNSPANFRTTDSAFYVKSGN--SSVYIERAFQTARAADPAVILYYNDY 350
Query: 336 NTIEDSRDGKATPAMYLQKLRQISEFPGNQNLRIGIGLESH--FSTPNIPYMRASIDTLG 393
N + + K T + + K Q P + G+G + H + P+I + A++ +
Sbjct: 351 NI--EQNNAKTTKMVDMVKDFQARSIPID-----GVGFQMHVCMNYPSIANISAAMKKVV 403
Query: 394 ATGLPIWLTEVDV 406
GL + +TE+DV
Sbjct: 404 DLGLLVKITELDV 416
>pdb|3EMC|A Chain A, Crystal Structure Of Xynb, An Intracellular Xylanase From
Paenibacillus Barcinonensis
pdb|3EMQ|A Chain A, Crystal Structure Of Xilanase Xynb From Paenibacillus
Barcelonensis Complexed With An Inhibitor
pdb|3EMZ|A Chain A, Crystal Structure Of Xylanase Xynb From Paenibacillus
Barcinonensis Complexed With A Conduramine Derivative
Length = 331
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 113/252 (44%), Gaps = 34/252 (13%)
Query: 182 FPFGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYS--ASDAMLQFA 239
F G A++ +L + + E++MK+ E P +Y+ A+D ++ FA
Sbjct: 15 FKIGAAVHTRMLQTEG--EFIAKHYNSVTAENQMKF--EEVHPREHEYTFEAADEIVDFA 70
Query: 240 KNHNIAVRGHNIFWDDPQYQPGWV------NSLSPSDLSKAADKRINSVTSRYKGQVIAW 293
I VRGH + W + P W+ + S + + I++V RYK Q+ AW
Sbjct: 71 VARGIGVRGHTLVWHNQT--PAWMFEDASGGTASREMMLSRLKQHIDTVVGRYKDQIYAW 128
Query: 294 DVVNENLH----FSFFESK----LGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGK 345
DVVNE + ++K LG++ FN H D LF NDYN
Sbjct: 129 DVVNEAIEDKTDLIMRDTKWLRLLGEDYLVQAFNMAHEADPNALLFYNDYN--------- 179
Query: 346 ATPAMYLQKLRQISEFPGNQNLRI-GIGLESHFST--PNIPYMRASIDTLGATGLPIWLT 402
T + +K+ + +Q + GIG++ H++ P++ +R +I+ + + + +T
Sbjct: 180 ETDPVKREKIYNLVRSLLDQGAPVHGIGMQGHWNIHGPSMDEIRQAIERYASLDVQLHVT 239
Query: 403 EVDVQSSPNQAQ 414
E+D+ ++ Q
Sbjct: 240 ELDLSVFRHEDQ 251
>pdb|3NYD|A Chain A, Crystal Structure Of Kemp Eliminase Hg-2 Complexed With
Transition State Analog 5-Nitro Benzotriazole
pdb|3NYD|B Chain B, Crystal Structure Of Kemp Eliminase Hg-2 Complexed With
Transition State Analog 5-Nitro Benzotriazole
Length = 316
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 108/224 (48%), Gaps = 19/224 (8%)
Query: 184 FGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHN 243
FG A ++N LT + F + E+ MKW +TE S G +++ +D ++ +A+ +
Sbjct: 18 FGVATDQNRLTTGKNAAIIQADFGMVWPENSMKWDATEPSQGNFNFAGADYLVNWAQQNG 77
Query: 244 IAVRGHNIFWDDPQYQPGWVNSLSPSD-LSKAADKRINSVTSRYKGQVIAWDVVNE---- 298
+ G + W P WV+S++ + L+ I ++ +RYKG++ AWDVV E
Sbjct: 78 KLIGGGMLVWH--SQLPSWVSSITDKNTLTNVMKNHITTLMTRYKGKIRAWDVVGEAFNE 135
Query: 299 --NLHFSFFESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLR 356
+L + F + +G++ + F + D L++ DYN DS T A+ + +++
Sbjct: 136 DGSLRQTVFLNVIGEDYIPIAFQTARAADPNAKLYIMDYNL--DSASYPKTQAI-VNRVK 192
Query: 357 Q--ISEFPGNQNLRIGIGLESHFSTPNIPYMRASIDTLGATGLP 398
Q + P + GIG ++H S + ++ L + G P
Sbjct: 193 QWRAAGVPID-----GIGSQTHLSAGQGAGVLQALPLLASAGTP 231
>pdb|1W3H|A Chain A, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
pdb|1W3H|B Chain B, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
Length = 359
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 119/256 (46%), Gaps = 43/256 (16%)
Query: 182 FPFGCAI-----NKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAML 236
FP G A+ N +I T++A QN + F E+ MK S S ++ SD ++
Sbjct: 20 FPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMK-MSYMYSGSNFSFTNSDRLV 78
Query: 237 QFAKNHNIAVRGHNIFWDDPQYQ-PGWVNSLSPSDLSKAADKRINSVTSRYKGQVIAWDV 295
+A + V GH + W P YQ P W S S ++ + + I++V + + GQV +WDV
Sbjct: 79 SWAAQNGQTVHGHTLVWH-PSYQLPNWA-SDSNANFRQDFARHIDTVAAHFAGQVKSWDV 136
Query: 296 VNENLHFSFFESKLGQNASG----VF-------------FNRVHSLDGATTLFMNDYNTI 338
VNE L S + +A+G VF F R + D L+ ND+NT
Sbjct: 137 VNEALFDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYNDFNTE 196
Query: 339 EDSRDGKATPAM--YLQKLRQISEFPGNQNLRI-GIGLESHFST--PNIPYMRASIDTLG 393
E +G T A+ +Q+L N + I G+G + H P+I +R ++ +
Sbjct: 197 E---NGAKTTALVNLVQRLL-------NNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIV 246
Query: 394 ATG--LPIWLTEVDVQ 407
A L I +TE+DV+
Sbjct: 247 ALSPTLKIKITELDVR 262
>pdb|1W2V|A Chain A, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
pdb|1W2V|B Chain B, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
Length = 348
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 119/256 (46%), Gaps = 43/256 (16%)
Query: 182 FPFGCAI-----NKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAML 236
FP G A+ N +I T++A QN + F E+ MK S S ++ SD ++
Sbjct: 9 FPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMK-MSYMYSGSNFSFTNSDRLV 67
Query: 237 QFAKNHNIAVRGHNIFWDDPQYQ-PGWVNSLSPSDLSKAADKRINSVTSRYKGQVIAWDV 295
+A + V GH + W P YQ P W S S ++ + + I++V + + GQV +WDV
Sbjct: 68 SWAAQNGQTVHGHTLVWH-PSYQLPNWA-SDSNANFRQDFARHIDTVAAHFAGQVKSWDV 125
Query: 296 VNENLHFSFFESKLGQNASG----VF-------------FNRVHSLDGATTLFMNDYNTI 338
VNE L S + +A+G VF F R + D L+ ND+NT
Sbjct: 126 VNEALFDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYNDFNTE 185
Query: 339 EDSRDGKATPAM--YLQKLRQISEFPGNQNLRI-GIGLESHFST--PNIPYMRASIDTLG 393
E +G T A+ +Q+L N + I G+G + H P+I +R ++ +
Sbjct: 186 E---NGAKTTALVNLVQRLL-------NNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIV 235
Query: 394 ATG--LPIWLTEVDVQ 407
A L I +TE+DV+
Sbjct: 236 ALSPTLKIKITELDVR 251
>pdb|1W32|A Chain A, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
pdb|1W32|B Chain B, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
Length = 348
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 119/256 (46%), Gaps = 43/256 (16%)
Query: 182 FPFGCAI-----NKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAML 236
FP G A+ N +I T++A QN + F E+ MK S S ++ SD ++
Sbjct: 9 FPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMK-MSYMYSGSNFSFTNSDRLV 67
Query: 237 QFAKNHNIAVRGHNIFWDDPQYQ-PGWVNSLSPSDLSKAADKRINSVTSRYKGQVIAWDV 295
+A + V GH + W P YQ P W S S ++ + + I++V + + GQV +WDV
Sbjct: 68 SWAAQNGQTVHGHALVWH-PSYQLPNWA-SDSNANFRQDFARHIDTVAAHFAGQVKSWDV 125
Query: 296 VNENLHFSFFESKLGQNASG----VF-------------FNRVHSLDGATTLFMNDYNTI 338
VNE L S + +A+G VF F R + D L+ ND+NT
Sbjct: 126 VNEALFDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYNDFNTE 185
Query: 339 EDSRDGKATPAM--YLQKLRQISEFPGNQNLRI-GIGLESHFST--PNIPYMRASIDTLG 393
E +G T A+ +Q+L N + I G+G + H P+I +R ++ +
Sbjct: 186 E---NGAKTTALVNLVQRLL-------NNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIV 235
Query: 394 ATG--LPIWLTEVDVQ 407
A L I +TE+DV+
Sbjct: 236 ALSPTLKIKITELDVR 251
>pdb|1W2P|A Chain A, The 3-Dimensional Structure Of A Xylanase (Xyn10a) From
Cellvibrio Japonicus
pdb|1W2P|B Chain B, The 3-Dimensional Structure Of A Xylanase (Xyn10a) From
Cellvibrio Japonicus
Length = 348
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 119/256 (46%), Gaps = 43/256 (16%)
Query: 182 FPFGCAI-----NKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAML 236
FP G A+ N +I T++A QN + F E+ MK S S ++ SD ++
Sbjct: 9 FPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMK-MSYMYSGSNFSFTNSDRLV 67
Query: 237 QFAKNHNIAVRGHNIFWDDPQYQ-PGWVNSLSPSDLSKAADKRINSVTSRYKGQVIAWDV 295
+A + V GH + W P YQ P W S S ++ + + I++V + + GQV +WDV
Sbjct: 68 SWAAQNGQTVHGHALVWH-PSYQLPNWA-SDSNANFRQDFARHIDTVAAHFAGQVKSWDV 125
Query: 296 VNENLHFSFFESKLGQNASG----VF-------------FNRVHSLDGATTLFMNDYNTI 338
VNE L S + +A+G VF F R + D L+ ND+NT
Sbjct: 126 VNEALFDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYNDFNTE 185
Query: 339 EDSRDGKATPAM--YLQKLRQISEFPGNQNLRI-GIGLESHFST--PNIPYMRASIDTLG 393
E +G T A+ +Q+L N + I G+G + H P+I +R ++ +
Sbjct: 186 E---NGAKTTALVNLVQRLL-------NNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIV 235
Query: 394 ATG--LPIWLTEVDVQ 407
A L I +TE+DV+
Sbjct: 236 ALSPTLKIKITELDVR 251
>pdb|1CLX|A Chain A, Catalytic Core Of Xylanase A
pdb|1CLX|B Chain B, Catalytic Core Of Xylanase A
pdb|1CLX|C Chain C, Catalytic Core Of Xylanase A
pdb|1CLX|D Chain D, Catalytic Core Of Xylanase A
Length = 347
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 119/256 (46%), Gaps = 43/256 (16%)
Query: 182 FPFGCAI-----NKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAML 236
FP G A+ N +I T++A QN + F E+ MK S S ++ SD ++
Sbjct: 8 FPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMK-MSYMYSGSNFSFTNSDRLV 66
Query: 237 QFAKNHNIAVRGHNIFWDDPQYQ-PGWVNSLSPSDLSKAADKRINSVTSRYKGQVIAWDV 295
+A + V GH + W P YQ P W S S ++ + + I++V + + GQV +WDV
Sbjct: 67 SWAAQNGQTVHGHALVWH-PSYQLPNWA-SDSNANFRQDFARHIDTVAAHFAGQVKSWDV 124
Query: 296 VNENLHFSFFESKLGQNASG----VF-------------FNRVHSLDGATTLFMNDYNTI 338
VNE L S + +A+G VF F R + D L+ ND+NT
Sbjct: 125 VNEALFDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYNDFNTE 184
Query: 339 EDSRDGKATPAM--YLQKLRQISEFPGNQNLRI-GIGLESHFST--PNIPYMRASIDTLG 393
E +G T A+ +Q+L N + I G+G + H P+I +R ++ +
Sbjct: 185 E---NGAKTTALVNLVQRLL-------NNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIV 234
Query: 394 ATG--LPIWLTEVDVQ 407
A L I +TE+DV+
Sbjct: 235 ALSPTLKIKITELDVR 250
>pdb|3U7B|A Chain A, A New Crystal Structure Of A Fusarium Oxysporum Gh10
Xylanase Reveals The Presence Of An Extended Loop On Top
Of The Catalytic Cleft
pdb|3U7B|B Chain B, A New Crystal Structure Of A Fusarium Oxysporum Gh10
Xylanase Reveals The Presence Of An Extended Loop On Top
Of The Catalytic Cleft
pdb|3U7B|C Chain C, A New Crystal Structure Of A Fusarium Oxysporum Gh10
Xylanase Reveals The Presence Of An Extended Loop On Top
Of The Catalytic Cleft
pdb|3U7B|D Chain D, A New Crystal Structure Of A Fusarium Oxysporum Gh10
Xylanase Reveals The Presence Of An Extended Loop On Top
Of The Catalytic Cleft
pdb|3U7B|E Chain E, A New Crystal Structure Of A Fusarium Oxysporum Gh10
Xylanase Reveals The Presence Of An Extended Loop On Top
Of The Catalytic Cleft
Length = 327
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 108/251 (43%), Gaps = 37/251 (14%)
Query: 212 EDEMKWYSTEASPGREDYSASDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWV--NSLSPS 269
E+ MKW + + + G+ ++ +D A + +R H + W P WV + +
Sbjct: 45 ENAMKWEAIQPNRGQFNWGPADQHAAAATSRGYELRCHTLVWHSQL--PSWVANGNWNNQ 102
Query: 270 DLSKAADKRINSVTSRYKGQVIAWDVVNENLHF------SFFESKLGQNASGVFFNRVHS 323
L IN+V RY+G+ WDVVNE L+ S F +G+ + F +
Sbjct: 103 TLQAVMRDHINAVMGRYRGKCTHWDVVNEALNEDGTYRDSVFLRVIGEAYIPIAFRMALA 162
Query: 324 LDGATTLFMNDYNTIEDSRDGKATPAMYLQKLRQISEFPGNQNLRI-GIGLESHFS---- 378
D T L+ NDYN + + K A ++I+ + LRI GIGL++H +
Sbjct: 163 ADPTTKLYYNDYNL--EYGNAKTEGA------KRIARLVKSYGLRIDGIGLQAHMTSEST 214
Query: 379 ------TPNIPYMRASIDTLGATGLPIWLTEVDVQSSPNQAQYLEQILREAHAH------ 426
TP+ + + + L G+ + TE+D++ + Q Q +A+A
Sbjct: 215 PTQNTPTPSRAKLASVLQGLADLGVDVAYTELDIRMNTPATQQKLQTNADAYARIVGSCM 274
Query: 427 --PKVQGIVVW 435
+ GI VW
Sbjct: 275 DVKRCVGITVW 285
>pdb|1XYS|A Chain A, Catalytic Core Of Xylanase A E246c Mutant
pdb|1XYS|B Chain B, Catalytic Core Of Xylanase A E246c Mutant
Length = 347
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 118/256 (46%), Gaps = 43/256 (16%)
Query: 182 FPFGCAI-----NKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAML 236
FP G A+ N +I T++A QN + F E+ MK S S ++ SD ++
Sbjct: 8 FPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMK-MSYMYSGSNFSFTNSDRLV 66
Query: 237 QFAKNHNIAVRGHNIFWDDPQYQ-PGWVNSLSPSDLSKAADKRINSVTSRYKGQVIAWDV 295
+A + V GH + W P YQ P W S S ++ + + I++V + + GQV +WDV
Sbjct: 67 SWAAQNGQTVHGHALVWH-PSYQLPNWA-SDSNANFRQDFARHIDTVAAHFAGQVKSWDV 124
Query: 296 VNENLHFSFFESKLGQNASG----VF-------------FNRVHSLDGATTLFMNDYNTI 338
VNE L S + +A+G VF F R + D L+ ND+NT
Sbjct: 125 VNEALFDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYNDFNTE 184
Query: 339 EDSRDGKATPAM--YLQKLRQISEFPGNQNLRI-GIGLESHFST--PNIPYMRASIDTLG 393
E +G T A+ +Q+L N + I G+G + H P+I +R ++ +
Sbjct: 185 E---NGAKTTALVNLVQRLL-------NNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIV 234
Query: 394 ATG--LPIWLTEVDVQ 407
A L I +T +DV+
Sbjct: 235 ALSPTLKIKITCLDVR 250
>pdb|1E5N|A Chain A, E246c Mutant Of P Fluorescens Subsp. Cellulosa Xylanase A
In Complex With Xylopentaose
pdb|1E5N|B Chain B, E246c Mutant Of P Fluorescens Subsp. Cellulosa Xylanase A
In Complex With Xylopentaose
Length = 348
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 118/256 (46%), Gaps = 43/256 (16%)
Query: 182 FPFGCAI-----NKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAML 236
FP G A+ N +I T++A QN + F E+ MK S S ++ SD ++
Sbjct: 9 FPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMK-MSYMYSGSNFSFTNSDRLV 67
Query: 237 QFAKNHNIAVRGHNIFWDDPQYQ-PGWVNSLSPSDLSKAADKRINSVTSRYKGQVIAWDV 295
+A + V GH + W P YQ P W S S ++ + + I++V + + GQV +WDV
Sbjct: 68 SWAAQNGQTVHGHALVWH-PSYQLPNWA-SDSNANFRQDFARHIDTVAAHFAGQVKSWDV 125
Query: 296 VNENLHFSFFESKLGQNASG----VF-------------FNRVHSLDGATTLFMNDYNTI 338
VNE L S + +A+G VF F R + D L+ ND+NT
Sbjct: 126 VNEALFDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYNDFNTE 185
Query: 339 EDSRDGKATPAM--YLQKLRQISEFPGNQNLRI-GIGLESHFST--PNIPYMRASIDTLG 393
E +G T A+ +Q+L N + I G+G + H P+I +R ++ +
Sbjct: 186 E---NGAKTTALVNLVQRLL-------NNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIV 235
Query: 394 ATG--LPIWLTEVDVQ 407
A L I +T +DV+
Sbjct: 236 ALSPTLKIKITCLDVR 251
>pdb|3MMD|A Chain A, Crystal Structure Of The W241a Mutant Of Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6) Complexed With
Hydrolyzed Xylopentaose
Length = 379
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 182 FPFGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKN 241
F G A+ L N F E+ MK S + G+ ++ +D +++FAK
Sbjct: 28 FTIGAAVEPYQLQNEKDVQMLKRHFNSIVAENVMKPISIQPEEGKFNFEQADRIVKFAKA 87
Query: 242 HNIAVRGHNIFWD---------DPQYQPGWVNSLSPSD-------LSKAADKRINSVTSR 285
+ + +R H + W D + +P VN P L K + I ++ R
Sbjct: 88 NGMDIRFHTLVWHSQVPQWFFLDKEGKP-MVNETDPVKREQNKQLLLKRLETHIKTIVER 146
Query: 286 YKGQVIAWDVVNE------NLHFSFFESKLGQNASGVFFNRVHSLDGATT-LFMNDYNT- 337
YK + WDVVNE L S + G + V F G L+MNDYNT
Sbjct: 147 YKDDIKYWDVVNEVVGDDGKLRNSPWYQIAGIDYIKVAFQAARKYGGDNIKLYMNDYNTE 206
Query: 338 IEDSRDGKATPAMYLQKLRQISEFPGNQNLRI-GIGLESHFS--TPNIPYMRASIDTLGA 394
+E R A+Y ++Q+ E + + I GIG +SH P+ + +I+ A
Sbjct: 207 VEPKR-----TALY-NLVKQLKE----EGVPIDGIGHQSHIQIGAPSEAEIEKTINMFAA 256
Query: 395 TGLPIWLTEVDV 406
GL +TE+DV
Sbjct: 257 LGLDNQITELDV 268
>pdb|1HIZ|A Chain A, Xylanase T6 (Xt6) From Bacillus Stearothermophilus
pdb|1R85|A Chain A, Crystal Structure Of The Extracellular Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6): The Wt Enzyme
(Monoclinic Form) At 1.45a Resolution
pdb|1R87|A Chain A, Crystal Structure Of The Extracellular Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6, Monoclinic
Form): The Complex Of The Wt Enzyme With Xylopentaose At
1.67a Resolution
Length = 379
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 182 FPFGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKN 241
F G A+ L N F E+ MK S + G+ ++ +D +++FAK
Sbjct: 28 FTIGAAVEPYQLQNEKDVQMLKRHFNSIVAENVMKPISIQPEEGKFNFEQADRIVKFAKA 87
Query: 242 HNIAVRGHNIFWD---------DPQYQPGWVNSLSPSD-------LSKAADKRINSVTSR 285
+ + +R H + W D + +P VN P L K + I ++ R
Sbjct: 88 NGMDIRFHTLVWHSQVPQWFFLDKEGKP-MVNETDPVKREQNKQLLLKRLETHIKTIVER 146
Query: 286 YKGQVIAWDVVNE------NLHFSFFESKLGQNASGVFFNRVHSLDGATT-LFMNDYNT- 337
YK + WDVVNE L S + G + V F G L+MNDYNT
Sbjct: 147 YKDDIKYWDVVNEVVGDDGKLRNSPWYQIAGIDYIKVAFQAARKYGGDNIKLYMNDYNTE 206
Query: 338 IEDSRDGKATPAMYLQKLRQISEFPGNQNLRI-GIGLESHFST--PNIPYMRASIDTLGA 394
+E R A+Y ++Q+ E + + I GIG +SH P+ + +I+ A
Sbjct: 207 VEPKRT-----ALY-NLVKQLKE----EGVPIDGIGHQSHIQIGWPSEAEIEKTINMFAA 256
Query: 395 TGLPIWLTEVDV 406
GL +TE+DV
Sbjct: 257 LGLDNQITELDV 268
>pdb|2UWF|A Chain A, Crystal Structure Of Family 10 Xylanase From Bacillus
Halodurans
Length = 356
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 110/266 (41%), Gaps = 42/266 (15%)
Query: 169 QNANISIEQKQLRFPFGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGRED 228
Q A++S E+ Q +F G A+ L Q + E+ MK S + G +
Sbjct: 7 QVASLS-ERYQEQFDIGAAVEPYQLEGRQAQI-LKHHYNSLVAENAMKPVSLQPREGEWN 64
Query: 229 YSASDAMLQFAKNHNIAVRGHNIFWDDPQYQPGW----------VNSLSPSD-------L 271
+ +D +++FA+ HN+ +R H + W P W V+ P L
Sbjct: 65 WEGADKIVEFARKHNMELRFHTLVWHSQ--VPEWFFIDENGNRMVDETDPEKRKANKQLL 122
Query: 272 SKAADKRINSVTSRYKGQVIAWDVVNE------NLHFSFFESKLGQNASGVFFNRVHSLD 325
+ + I +V RYK V +WDVVNE L S + G + V F
Sbjct: 123 LERMENHIKTVVERYKDDVTSWDVVNEVIDDDGGLRESEWYQITGTDYIKVAFETARKYG 182
Query: 326 G-ATTLFMNDYNT-IEDSRDGKATPAMYLQKLRQISEFPGNQNLRI-GIGLESHFST--P 380
G L++NDYNT + RD L + + Q + I G+G +SH P
Sbjct: 183 GEEAKLYINDYNTEVPSKRD----------DLYNLVKDLLEQGVPIDGVGHQSHIQIGWP 232
Query: 381 NIPYMRASIDTLGATGLPIWLTEVDV 406
+I RAS + + GL +TE+D+
Sbjct: 233 SIEDTRASFEKFTSLGLDNQVTELDM 258
>pdb|1R86|A Chain A, Crystal Structure Of The Extracellular Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6, Monoclinic
Form): The E159aE265A MUTANT AT 1.8A RESOLUTION
Length = 379
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 104/252 (41%), Gaps = 38/252 (15%)
Query: 182 FPFGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKN 241
F G A+ L N F E+ MK S + G+ ++ +D +++FAK
Sbjct: 28 FTIGAAVEPYQLQNEKDVQMLKRHFNSIVAENVMKPISIQPEEGKFNFEQADRIVKFAKA 87
Query: 242 HNIAVRGHNIFWD---------DPQYQPGWVNSLSPSD-------LSKAADKRINSVTSR 285
+ + +R H + W D + +P VN P L K + I ++ R
Sbjct: 88 NGMDIRFHTLVWHSQVPQWFFLDKEGKP-MVNETDPVKREQNKQLLLKRLETHIKTIVER 146
Query: 286 YKGQVIAWDVVNE------NLHFSFFESKLGQNASGVFFNRVHSLDGATT-LFMNDYNT- 337
YK + WDVVN L S + G + V F G L+MNDYNT
Sbjct: 147 YKDDIKYWDVVNAVVGDDGKLRNSPWYQIAGIDYIKVAFQAARKYGGDNIKLYMNDYNTE 206
Query: 338 IEDSRDGKATPAMYLQKLRQISEFPGNQNLRI-GIGLESHFST--PNIPYMRASIDTLGA 394
+E R A+Y ++Q+ E + + I GIG +SH P+ + +I+ A
Sbjct: 207 VEPKRT-----ALY-NLVKQLKE----EGVPIDGIGHQSHIQIGWPSEAEIEKTINMFAA 256
Query: 395 TGLPIWLTEVDV 406
GL +T +DV
Sbjct: 257 LGLDNQITALDV 268
>pdb|2FGL|A Chain A, An Alkali Thermostable F10 XYLANASE FROM ALKALOPHILIC
Bacillus Sp. Ng-27
pdb|2FGL|B Chain B, An Alkali Thermostable F10 XYLANASE FROM ALKALOPHILIC
Bacillus Sp. Ng-27
Length = 354
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 42/226 (18%)
Query: 212 EDEMKWYSTEASPGREDYSASDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWV-------- 263
E+ MK S + G + +DA+++FA+ +N+ +R H + W + P W
Sbjct: 48 ENAMKPISLQPEEGVFTWDGADAIVEFARKNNMNLRFHTLVWHNQ--VPDWFFLDEEGNP 105
Query: 264 ---------NSLSPSDLSKAADKRINSVTSRYKGQVIAWDVVNE----------NLHFSF 304
+ L + + I +V RYK V AWDVVNE L S
Sbjct: 106 MVEETNEAKRQANKELLLERLETHIKTVVERYKDDVTAWDVVNEVVDDGTPNERGLRESV 165
Query: 305 FESKLGQNASGVFFNRVHSLDGATT-LFMNDYNTIEDSRDGKATPAM-YLQKLRQISEFP 362
+ G V F G LF+NDYNT + TP +L L + +
Sbjct: 166 WYQITGDEYIRVAFETARKYAGEDAKLFINDYNT-------EVTPKRDHLYNL--VQDLL 216
Query: 363 GNQNLRIGIGLESHFST--PNIPYMRASIDTLGATGLPIWLTEVDV 406
+ G+G ++H P I +R S++ GL +TE+DV
Sbjct: 217 ADGVPIDGVGHQAHIQIDWPTIDEIRTSMEMFAGLGLDNQVTELDV 262
>pdb|2F8Q|A Chain A, An Alkali Thermostable F10 XYLANASE FROM ALKALOPHILIC
Bacillus Sp. Ng-27
pdb|2F8Q|B Chain B, An Alkali Thermostable F10 XYLANASE FROM ALKALOPHILIC
Bacillus Sp. Ng-27
Length = 353
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 42/226 (18%)
Query: 212 EDEMKWYSTEASPGREDYSASDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWV-------- 263
E+ MK S + G + +DA+++FA+ +N+ +R H + W + P W
Sbjct: 47 ENAMKPISLQPEEGVFTWDGADAIVEFARKNNMNLRFHTLVWHNQ--VPDWFFLDEEGNP 104
Query: 264 ---------NSLSPSDLSKAADKRINSVTSRYKGQVIAWDVVNE----------NLHFSF 304
+ L + + I +V RYK V AWDVVNE L S
Sbjct: 105 MVEETNEAKRQANKELLLERLETHIKTVVERYKDDVTAWDVVNEVVDDGTPNERGLRESV 164
Query: 305 FESKLGQNASGVFFNRVHSLDGATT-LFMNDYNTIEDSRDGKATPAM-YLQKLRQISEFP 362
+ G V F G LF+NDYNT + TP +L L + +
Sbjct: 165 WYQITGDEYIRVAFETARKYAGEDAKLFINDYNT-------EVTPKRDHLYNL--VQDLL 215
Query: 363 GNQNLRIGIGLESHFST--PNIPYMRASIDTLGATGLPIWLTEVDV 406
+ G+G ++H P I +R S++ GL +TE+DV
Sbjct: 216 ADGVPIDGVGHQAHIQIDWPTIDEIRTSMEMFAGLGLDNQVTELDV 261
>pdb|4F8X|A Chain A, Penicillium Canescens Endo-1,4-Beta-Xylanase Xyle
Length = 335
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 118/296 (39%), Gaps = 44/296 (14%)
Query: 194 TNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHNIAVRGHNIFW 253
T+ AY F + MK+ TE +++ + L+ A+ VR HN+ W
Sbjct: 29 TDAAYLKVLKQNFGEITPANAMKFMYTETEQNVFNFTEGEQFLEVAERFGSKVRCHNLVW 88
Query: 254 DDPQYQPGWVNSLSPSDLSKAADKRINSVTSRYKGQVIAWDVVNENLH------FSFFES 307
+ + +L+ I + + +WDVVNE L+ S +
Sbjct: 89 ASQVSDFVTSKTWTAKELTAVMKNHIFKTVQHFGRRCYSWDVVNEALNGDGTFSSSVWYD 148
Query: 308 KLGQNASGVFFNRVH---SLDGA--TTLFMNDYNTIEDSRDGKATPAMYLQKLRQISEFP 362
+G+ + F + GA L+ NDY IE+ + LR+
Sbjct: 149 TIGEEYFYLAFKYAQEALAQIGANDVKLYYNDYG-IENPGTKSTAVLQLVSNLRK----- 202
Query: 363 GNQNLRI-GIGLESHF---STPNI--------PYMRASIDTLGATGLPIWLTEVDVQSSP 410
+ +RI G+GLESHF TP++ Y++A++D + T L + + V ++
Sbjct: 203 --RGIRIDGVGLESHFIVGETPSLADQLATKQAYIKANLD-VAVTELDVRFSTVPYYTAA 259
Query: 411 NQAQ----YLEQILREAHAHPKVQGIVVW-----AAWKPS---GCYRMCLTDNNFK 454
Q Q Y + +A P+ G+VVW +W PS G CL +N +
Sbjct: 260 AQKQQAEDYYVSVASCMNAGPRCIGVVVWDFDDAYSWVPSAFAGQGGACLFNNTLE 315
>pdb|2DEP|A Chain A, Crystal Structure Of Xylanase B From Clostridium
Stercorarium F9
pdb|2DEP|B Chain B, Crystal Structure Of Xylanase B From Clostridium
Stercorarium F9
Length = 356
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 102/254 (40%), Gaps = 41/254 (16%)
Query: 182 FPFGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKN 241
FP G AI T + + + E+ MK S + + G ++ +D ++QFAK
Sbjct: 16 FPIGAAIEPGYTTGQIAE-LYKKHVNMLVAENAMKPASLQPTEGNFQWADADRIVQFAKE 74
Query: 242 HNIAVRGHNIFWDDPQYQPGWV-------NSLSPSDLSKAADKR----------INSVTS 284
+ + +R H + W + P W + +D K + R I +V
Sbjct: 75 NGMELRFHTLVWHN--QTPDWFFLDKEGKPMVEETDPQKREENRKLLLQRLENYIRAVVL 132
Query: 285 RYKGQVIAWDVVNE--------NLHFSFFESKLGQNASGVFFNRVHSLDGA-TTLFMNDY 335
RYK + +WDVVNE + S + G V F G+ L++NDY
Sbjct: 133 RYKDDIKSWDVVNEVIEPNDPGGMRNSPWYQITGTEYIEVAFRATREAGGSDIKLYINDY 192
Query: 336 NTIEDSRDGKATPAMYLQKLRQISEFPGNQNLRI-GIGLESHFSTPNIPYMR--ASIDTL 392
NT D + + ++ + E + + I G+G ++H N P R SI
Sbjct: 193 NT-----DDPVKRDILYELVKNLLE----KGVPIDGVGHQTHIDIYNPPVERIIESIKKF 243
Query: 393 GATGLPIWLTEVDV 406
GL +TE+D+
Sbjct: 244 AGLGLDNIITELDM 257
>pdb|3RDK|A Chain A, Protein Crystal Structure Of Xylanase A1 Of Paenibacillus
Sp. Jdr-2
pdb|3RDK|B Chain B, Protein Crystal Structure Of Xylanase A1 Of Paenibacillus
Sp. Jdr-2
pdb|4E4P|A Chain A, Second Native Structure Of Xylanase A1 From Paenibacillus
Sp. Jdr-2
pdb|4E4P|B Chain B, Second Native Structure Of Xylanase A1 From Paenibacillus
Sp. Jdr-2
pdb|3RO8|A Chain A, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|B Chain B, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|C Chain C, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|D Chain D, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|E Chain E, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|F Chain F, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|G Chain G, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|H Chain H, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
Length = 341
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 118/264 (44%), Gaps = 42/264 (15%)
Query: 182 FPFGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKN 241
F G AI+ L T + V + MK + + + G ++A+DAM+
Sbjct: 15 FLIGNAISAEDLEGTRLE-LLKMHHDVVTAGNAMKPDALQPTKGNFTFTAADAMIDKVLA 73
Query: 242 HNIAVRGHNIFWDDPQYQPGWVNS-------LSPSDLSKAADK---RINSVTSRYKGQVI 291
+ + GH + W Q P W+N+ P +A D I +V + +VI
Sbjct: 74 EGMKMHGHVLVWH--QQSPAWLNTKKDDNNNTVPLGRDEALDNLRTHIQTVMKHFGNKVI 131
Query: 292 AWDVVNENLHF-----SFFESKLGQN----------ASGVFFNRVHSLDGATT----LFM 332
+WDVVNE ++ + +++ L Q F LD + L+
Sbjct: 132 SWDVVNEAMNDNPSNPADYKASLRQTPWYQAIGSDYVEQAFLAAREVLDENPSWNIKLYY 191
Query: 333 NDYNTIEDSRDGKATPAMYLQKLRQISE-FPGNQNLRI---GIGLESHFSTPNIP-YMRA 387
NDYN ED+++ KAT A+Y ++ I++ + N ++ G+G++ H++ P ++
Sbjct: 192 NDYN--EDNQN-KAT-AIY-NMVKDINDRYAAAHNGKLLIDGVGMQGHYNINTNPDNVKL 246
Query: 388 SIDTLGATGLPIWLTEVDVQSSPN 411
S++ + G+ + ++E+DV + N
Sbjct: 247 SLEKFISLGVEVSVSELDVTAGNN 270
>pdb|2W5F|A Chain A, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
pdb|2W5F|B Chain B, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
Length = 540
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/316 (21%), Positives = 117/316 (37%), Gaps = 74/316 (23%)
Query: 182 FPFGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPG------REDYSASDAM 235
F G +N + N++ + F E+EMK +T G R + + ++
Sbjct: 192 FRVGSVLNSGTVNNSSIKALILREFNSITCENEMKPDATLVQSGSTNTNIRVSLNRAASI 251
Query: 236 LQFAKNHNIAVRGHNIFW----------DDPQYQPGWVNSLSPSDLSKAADKRINSVTSR 285
L F +NIAVRGH + W D+ Q WV S S + + + I ++ +
Sbjct: 252 LNFCAQNNIAVRGHTLVWHSQTPQWFFKDNFQDNGNWV---SQSVMDQRLESYIKNMFAE 308
Query: 286 YKGQ-----VIAWDVVNENLHFSFFESKLGQNASGVFFNRVHS-----------LDGATT 329
+ Q + A+DVVN + ++ A + S ++ A T
Sbjct: 309 IQRQYPSLNLYAYDVVNAAVSDDANRTRYYGGAREPGYGNGRSPWVQIYGDNKFIEKAFT 368
Query: 330 -----------LFMNDYNTIED-SRDGKATPAMYLQKLRQISEFPGNQNLRIGIGLESHF 377
L+ NDYN D RD A+ L N+ L G+G++SH
Sbjct: 369 YARKYAPANCKLYYNDYNEYWDHKRDCIASICANLY----------NKGLLDGVGMQSHI 418
Query: 378 ST-----PNIPYMRASIDTLGATGLPIWLTEVDVQ------SSPNQAQYLEQILREA--- 423
+ I +A++ G + +TE+D+ S QA + + + A
Sbjct: 419 NADMNGFSGIQNYKAALQKYINIGCDVQITELDISTENGKFSLQQQADKYKAVFQAAVDI 478
Query: 424 ---HAHPKVQGIVVWA 436
+ KV + VW
Sbjct: 479 NRTSSKGKVTAVCVWG 494
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 22/146 (15%)
Query: 165 GKPLQNANISI--EQKQLRFPFGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEA 222
GKP+ NA++ I EQ QL+ PFG A+ + ++ + +R +T + K+
Sbjct: 780 GKPISNASVYILNEQSQLQ-PFG-AVGELCISGMGVSKGYVNRADLT----KEKFIENPF 833
Query: 223 SPGREDYSAS-------DAMLQFAK--NHNIAVRGHNIFWDDPQYQ----PGWVNSLSPS 269
PG Y D +++A + + +RGH I ++ + Q PG +++ +
Sbjct: 834 KPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVA 893
Query: 270 DLSKAADKRINSVTSRYKGQVIAWDV 295
D ++ D IN+ + Q+ A DV
Sbjct: 894 DRHESGDASINAYLVN-RTQLSAEDV 918
>pdb|2WYS|A Chain A, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
pdb|2WYS|B Chain B, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
pdb|2WZE|A Chain A, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D
Xylanas Xylohexaose
pdb|2WZE|B Chain B, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D
Xylanas Xylohexaose
Length = 540
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 67/313 (21%), Positives = 111/313 (35%), Gaps = 68/313 (21%)
Query: 182 FPFGCAINKNILTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPG------REDYSASDAM 235
F G +N + N++ + F E+E K +T G R + + ++
Sbjct: 192 FRVGSVLNSGTVNNSSIKALILREFNSITCENEXKPDATLVQSGSTNTNIRVSLNRAASI 251
Query: 236 LQFAKNHNIAVRGHNIFW----------DDPQYQPGWVN-SLSPSDLSKAADKRINSVTS 284
L F +NIAVRGH + W D+ Q WV+ S+ L +
Sbjct: 252 LNFCAQNNIAVRGHTLVWHSQTPQWFFKDNFQDNGNWVSQSVXDQRLESYIKNXFAEIQR 311
Query: 285 RYKG-QVIAWDVVNENLHFSFFESKLGQNASGVFFNRVHS-----------LDGATT--- 329
+Y + A+DVVN + ++ A + S ++ A T
Sbjct: 312 QYPSLNLYAYDVVNAAVSDDANRTRYYGGAREPGYGNGRSPWVQIYGDNKFIEKAFTYAR 371
Query: 330 --------LFMNDYNTIED-SRDGKATPAMYLQKLRQISEFPGNQNLRIGIGLESHFST- 379
L+ NDYN D RD A+ L N+ L G+G +SH +
Sbjct: 372 KYAPANCKLYYNDYNEYWDHKRDCIASICANLY----------NKGLLDGVGXQSHINAD 421
Query: 380 ----PNIPYMRASIDTLGATGLPIWLTEVDVQ------SSPNQAQYLEQILREA------ 423
I +A++ G + +TE+D+ S QA + + + A
Sbjct: 422 XNGFSGIQNYKAALQKYINIGCDVQITELDISTENGKFSLQQQADKYKAVFQAAVDINRT 481
Query: 424 HAHPKVQGIVVWA 436
+ KV + VW
Sbjct: 482 SSKGKVTAVCVWG 494
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 26/109 (23%)
Query: 265 SLSPSDLSKA-ADKRINSVTSRYKGQVIAWDVVNENLHFSFFESKLGQNASGVFFNRVHS 323
+L+P + K A INS+ S GQ +AWD V N KL Q+ G F+ +
Sbjct: 783 TLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNW------KKLFQDYGGGSFSFSNL 836
Query: 324 LDGATTLFMNDYNTIEDSRDGKATPAMYLQKLRQISEFPGNQNLRIGIG 372
+ G T F +++ +L+Q+ +F N N+ +G G
Sbjct: 837 IQGVTRRFSSEF------------------ELQQLEQFKKN-NMDVGFG 866
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 26/109 (23%)
Query: 265 SLSPSDLSKA-ADKRINSVTSRYKGQVIAWDVVNENLHFSFFESKLGQNASGVFFNRVHS 323
+L+P + K A INS+ S GQ +AWD V N KL Q+ G F+ +
Sbjct: 783 TLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNW------KKLFQDYGGGSFSFSNL 836
Query: 324 LDGATTLFMNDYNTIEDSRDGKATPAMYLQKLRQISEFPGNQNLRIGIG 372
+ G T F +++ +L+Q+ +F N N+ +G G
Sbjct: 837 IQGVTRRFSSEF------------------ELQQLEQFKKN-NMDVGFG 866
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 26/109 (23%)
Query: 265 SLSPSDLSKA-ADKRINSVTSRYKGQVIAWDVVNENLHFSFFESKLGQNASGVFFNRVHS 323
+L+P + K A INS+ S GQ +AWD V N KL Q+ G F+ +
Sbjct: 784 TLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNW------KKLFQDYGGGSFSFSNL 837
Query: 324 LDGATTLFMNDYNTIEDSRDGKATPAMYLQKLRQISEFPGNQNLRIGIG 372
+ G T F +++ +L+Q+ +F N N+ +G G
Sbjct: 838 IQGVTRRFSSEF------------------ELQQLEQFKKN-NMDVGFG 867
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 26/109 (23%)
Query: 265 SLSPSDLSKA-ADKRINSVTSRYKGQVIAWDVVNENLHFSFFESKLGQNASGVFFNRVHS 323
+L+P + K A INS+ S GQ +AWD V N KL Q+ G F+ +
Sbjct: 827 TLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNW------KKLFQDYGGGSFSFSNL 880
Query: 324 LDGATTLFMNDYNTIEDSRDGKATPAMYLQKLRQISEFPGNQNLRIGIG 372
+ G T F +++ +L+Q+ +F N N+ +G G
Sbjct: 881 IQGVTRRFSSEF------------------ELQQLEQFKKN-NMDVGFG 910
>pdb|2I7X|A Chain A, Structure Of Yeast Cpsf-100 (Ydh1p)
Length = 717
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 125 IWVDSISLQPFTQEEWRSQQHQSIEKNHKTNVRIQAVDKQGKPLQNANISIE 176
I +D+I +P ++EE + + Q EK N +I V ++ K L N N I+
Sbjct: 407 ISIDTIKEEPLSKEETEAFKVQLKEKKRDRNKKILLVKRESKKLANGNAIID 458
>pdb|2ZEZ|A Chain A, Family 16 Carbohydrate Binding Module-2
pdb|2ZEZ|B Chain B, Family 16 Carbohydrate Binding Module-2
pdb|2ZEZ|C Chain C, Family 16 Carbohydrate Binding Module-2
pdb|2ZEZ|D Chain D, Family 16 Carbohydrate Binding Module-2
Length = 144
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 13/63 (20%)
Query: 14 IIKNPELSHGLKGW------------SAFGNAKIEQRESGGNNSCISQKVYLEKNKFYTL 61
+I N +G+ GW +A+G K + SGG + + QKV L+ N Y L
Sbjct: 4 LIVNGTAENGMDGWPDWGYPVSAVPEAAYGGTK-GFKLSGGKQAGMGQKVALKPNTTYIL 62
Query: 62 SAW 64
AW
Sbjct: 63 GAW 65
>pdb|1V38|A Chain A, Solution Structure Of The Sterile Alpha Motif (Sam) Domain
Of Mouse Samsn1
Length = 78
Score = 28.5 bits (62), Expect = 7.9, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 317 FFNRVHSLDGATTLFMNDYNTIEDSRDGKAT 347
F R+H + +TL +N Y T++D +D K +
Sbjct: 18 FLERIHLQEYTSTLLLNGYETLDDLKDIKES 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,035,740
Number of Sequences: 62578
Number of extensions: 626245
Number of successful extensions: 1700
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1533
Number of HSP's gapped (non-prelim): 64
length of query: 472
length of database: 14,973,337
effective HSP length: 102
effective length of query: 370
effective length of database: 8,590,381
effective search space: 3178440970
effective search space used: 3178440970
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)