Query 042396
Match_columns 472
No_of_seqs 272 out of 1659
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 05:50:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042396.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042396hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00331 Glyco_hydro_10: Glyco 100.0 2.4E-68 5.3E-73 534.1 20.9 278 177-465 5-319 (320)
2 COG3693 XynA Beta-1,4-xylanase 100.0 3.2E-63 7E-68 474.0 25.5 256 200-466 52-341 (345)
3 smart00633 Glyco_10 Glycosyl h 100.0 3.1E-58 6.7E-63 447.9 24.9 238 215-462 1-254 (254)
4 PF07745 Glyco_hydro_53: Glyco 99.7 4.6E-15 1E-19 147.9 22.3 246 199-462 30-332 (332)
5 PF02018 CBM_4_9: Carbohydrate 99.5 1.3E-12 2.7E-17 113.4 16.1 108 12-120 1-128 (131)
6 PF00150 Cellulase: Cellulase 99.5 4E-12 8.7E-17 124.9 20.2 239 161-438 1-278 (281)
7 PF02449 Glyco_hydro_42: Beta- 99.4 9.2E-12 2E-16 128.2 15.9 246 200-468 18-370 (374)
8 PF01229 Glyco_hydro_39: Glyco 99.3 6.4E-11 1.4E-15 125.9 15.8 242 204-465 52-359 (486)
9 TIGR03356 BGL beta-galactosida 99.3 7.8E-10 1.7E-14 115.5 22.3 250 203-460 65-425 (427)
10 PLN02998 beta-glucosidase 99.1 2.5E-08 5.3E-13 105.7 23.7 254 204-467 94-486 (497)
11 PF00232 Glyco_hydro_1: Glycos 99.1 1.8E-09 3.9E-14 113.9 14.5 255 204-467 70-451 (455)
12 COG3867 Arabinogalactan endo-1 99.1 1.8E-08 3.8E-13 96.5 19.3 249 200-464 70-393 (403)
13 PLN02814 beta-glucosidase 99.1 4.4E-08 9.5E-13 104.0 24.5 255 204-467 89-481 (504)
14 PRK09593 arb 6-phospho-beta-gl 99.0 1.4E-07 3.1E-12 99.7 24.6 252 204-467 85-471 (478)
15 PLN02849 beta-glucosidase 99.0 1.5E-07 3.3E-12 99.9 24.2 262 197-467 80-481 (503)
16 PRK13511 6-phospho-beta-galact 99.0 2.3E-07 5E-12 98.1 25.2 254 204-467 66-464 (469)
17 PRK09852 cryptic 6-phospho-bet 98.9 2.2E-07 4.7E-12 98.1 24.2 256 204-467 83-467 (474)
18 PRK10150 beta-D-glucuronidase; 98.9 1.8E-07 3.9E-12 102.4 24.5 225 204-466 325-592 (604)
19 PRK15014 6-phospho-beta-glucos 98.9 4.6E-07 9.9E-12 95.8 25.6 256 200-467 76-471 (477)
20 PF11790 Glyco_hydro_cc: Glyco 98.9 7.2E-08 1.6E-12 93.1 17.3 164 287-461 63-238 (239)
21 TIGR01233 lacG 6-phospho-beta- 98.9 5.7E-07 1.2E-11 95.0 25.1 256 204-467 65-462 (467)
22 PRK09589 celA 6-phospho-beta-g 98.9 7.5E-07 1.6E-11 94.2 25.8 252 204-467 79-470 (476)
23 PF01301 Glyco_hydro_35: Glyco 98.5 1.8E-05 3.8E-10 79.7 21.2 257 182-468 10-318 (319)
24 COG2723 BglB Beta-glucosidase/ 98.4 5.7E-05 1.2E-09 78.2 20.9 258 200-467 66-451 (460)
25 PF02836 Glyco_hydro_2_C: Glyc 98.3 8.5E-06 1.8E-10 81.3 13.8 212 203-466 47-293 (298)
26 PF04862 DUF642: Protein of un 98.2 4.7E-05 1E-09 68.8 14.0 87 46-133 68-159 (159)
27 PLN03089 hypothetical protein; 98.2 3.2E-05 7E-10 78.1 13.6 87 46-135 266-365 (373)
28 PLN03089 hypothetical protein; 97.9 0.00019 4.1E-09 72.7 14.1 127 4-135 19-186 (373)
29 PRK10340 ebgA cryptic beta-D-g 97.9 0.0015 3.2E-08 75.7 22.9 201 204-466 367-599 (1021)
30 PLN03059 beta-galactosidase; P 97.6 0.00051 1.1E-08 76.1 12.8 148 182-334 45-222 (840)
31 PF12876 Cellulase-like: Sugar 97.6 5E-05 1.1E-09 61.6 3.8 53 282-334 1-64 (88)
32 KOG0626 Beta-glucosidase, lact 97.2 0.05 1.1E-06 57.4 20.1 90 205-300 104-203 (524)
33 COG1874 LacA Beta-galactosidas 97.1 0.0017 3.6E-08 70.9 8.4 116 180-299 14-161 (673)
34 PRK09525 lacZ beta-D-galactosi 96.9 0.07 1.5E-06 62.0 19.8 213 203-467 382-626 (1027)
35 PF14587 Glyco_hydr_30_2: O-Gl 96.8 0.076 1.6E-06 54.2 17.1 215 219-440 90-359 (384)
36 COG3664 XynB Beta-xylosidase [ 95.7 0.032 7E-07 56.7 7.5 220 224-463 34-289 (428)
37 PF02055 Glyco_hydro_30: O-Gly 95.2 0.18 3.8E-06 54.0 11.4 210 235-466 158-420 (496)
38 COG3934 Endo-beta-mannanase [C 94.8 0.089 1.9E-06 54.5 7.6 218 228-470 65-323 (587)
39 COG2730 BglC Endoglucanase [Ca 94.7 0.38 8.2E-06 50.3 12.1 116 203-328 84-219 (407)
40 COG5520 O-Glycosyl hydrolase [ 94.4 0.41 8.9E-06 48.0 10.8 182 239-440 111-312 (433)
41 PF13204 DUF4038: Protein of u 94.1 0.29 6.3E-06 48.6 9.3 174 230-434 88-280 (289)
42 PF15425 DUF4627: Domain of un 93.3 2.5 5.3E-05 38.4 12.6 123 10-133 4-211 (212)
43 KOG0496 Beta-galactosidase [Ca 93.0 0.19 4.1E-06 54.2 6.1 115 182-299 35-175 (649)
44 PF09092 Lyase_N: Lyase, N ter 92.9 3.1 6.6E-05 38.2 13.0 119 16-134 8-163 (178)
45 PLN00197 beta-amylase; Provisi 91.6 1.3 2.9E-05 47.0 10.3 63 199-264 134-206 (573)
46 PLN02161 beta-amylase 91.6 1.1 2.4E-05 47.2 9.5 64 198-264 123-196 (531)
47 PF03422 CBM_6: Carbohydrate b 91.4 2.6 5.6E-05 35.8 10.5 85 46-133 33-124 (125)
48 PF03425 CBM_11: Carbohydrate 91.4 1 2.2E-05 41.3 8.3 78 57-135 72-170 (178)
49 PLN02803 beta-amylase 90.9 1.3 2.8E-05 47.0 9.3 64 198-264 113-186 (548)
50 PLN02705 beta-amylase 89.5 1.9 4.2E-05 46.3 9.3 64 198-264 274-347 (681)
51 PLN02801 beta-amylase 89.4 2.9 6.2E-05 44.2 10.3 63 199-264 44-116 (517)
52 PLN02905 beta-amylase 89.0 2.3 4.9E-05 46.0 9.4 64 198-264 292-365 (702)
53 TIGR01370 cysRS possible cyste 88.2 4.2 9.1E-05 40.9 10.3 145 268-435 142-301 (315)
54 PF00332 Glyco_hydro_17: Glyco 85.9 0.98 2.1E-05 45.4 4.5 74 383-456 214-305 (310)
55 cd06263 MAM Meprin, A5 protein 85.0 7.5 0.00016 34.3 9.4 77 57-134 71-154 (157)
56 PF01373 Glyco_hydro_14: Glyco 84.6 0.78 1.7E-05 47.2 3.0 96 197-296 21-153 (402)
57 PF14488 DUF4434: Domain of un 84.3 13 0.00028 33.8 10.6 97 230-336 65-163 (166)
58 PF04620 FlaA: Flagellar filam 83.8 11 0.00024 35.7 10.2 51 54-104 103-154 (217)
59 PF02638 DUF187: Glycosyl hydr 81.7 27 0.0006 35.0 12.8 156 228-394 68-281 (311)
60 PF14299 PP2: Phloem protein 2 81.6 13 0.00028 33.3 9.4 83 52-134 55-153 (154)
61 PF00629 MAM: MAM domain; Int 81.4 13 0.00027 32.4 9.3 82 52-134 67-155 (160)
62 COG5309 Exo-beta-1,3-glucanase 80.7 60 0.0013 31.8 14.1 160 231-426 88-272 (305)
63 smart00137 MAM Domain in mepri 79.5 18 0.00038 32.4 9.7 77 57-134 75-158 (161)
64 PF12891 Glyco_hydro_44: Glyco 78.5 4.4 9.6E-05 38.9 5.5 57 275-331 106-176 (239)
65 PF09212 CBM27: Carbohydrate b 78.1 24 0.00052 32.1 9.9 117 17-133 10-168 (170)
66 smart00560 LamGL LamG-like jel 77.2 13 0.00029 32.0 7.9 13 58-70 2-14 (133)
67 PF02057 Glyco_hydro_59: Glyco 73.7 93 0.002 34.5 14.6 169 234-437 116-293 (669)
68 PF01120 Alpha_L_fucos: Alpha- 73.3 31 0.00067 35.2 10.6 92 230-333 138-244 (346)
69 PF14871 GHL6: Hypothetical gl 72.6 19 0.00041 31.4 7.6 90 197-287 4-124 (132)
70 smart00812 Alpha_L_fucos Alpha 71.9 22 0.00047 36.9 9.1 92 230-334 128-233 (384)
71 smart00606 CBD_IV Cellulose Bi 71.3 50 0.0011 28.0 10.0 78 48-131 43-128 (129)
72 PF05688 DUF824: Salmonella re 68.8 6.3 0.00014 27.8 3.0 22 155-176 16-37 (47)
73 COG2342 Predicted extracellula 64.3 1.5E+02 0.0033 29.2 15.7 212 193-437 31-280 (300)
74 smart00634 BID_1 Bacterial Ig- 56.4 15 0.00032 29.5 3.6 29 153-181 19-47 (92)
75 COG3250 LacZ Beta-galactosidas 55.5 84 0.0018 35.9 10.4 99 203-334 332-433 (808)
76 PF13620 CarboxypepD_reg: Carb 53.4 16 0.00035 28.2 3.3 29 156-184 2-30 (82)
77 PRK11354 kil FtsZ inhibitor pr 51.4 34 0.00073 26.2 4.4 51 91-169 15-69 (73)
78 PF03746 LamB_YcsF: LamB/YcsF 50.4 99 0.0021 29.9 8.6 93 229-333 41-143 (242)
79 PF13547 GTA_TIM: GTA TIM-barr 50.2 27 0.00058 34.4 4.7 14 395-408 205-218 (299)
80 PRK09936 hypothetical protein; 50.1 2.7E+02 0.0059 27.7 14.0 185 192-405 34-245 (296)
81 PRK05437 isopentenyl pyrophosp 49.5 2.3E+02 0.005 28.9 11.8 104 310-436 104-218 (352)
82 PRK07534 methionine synthase I 47.8 68 0.0015 32.6 7.6 82 312-402 85-176 (336)
83 KOG2499 Beta-N-acetylhexosamin 46.6 38 0.00082 35.8 5.4 63 226-288 246-327 (542)
84 cd00953 KDG_aldolase KDG (2-ke 45.8 2.1E+02 0.0045 28.1 10.6 20 381-401 107-126 (279)
85 COG2040 MHT1 Homocysteine/sele 43.9 81 0.0018 31.2 7.0 47 353-408 138-184 (300)
86 PF07691 PA14: PA14 domain; I 43.8 1.1E+02 0.0024 26.0 7.5 38 98-136 48-85 (145)
87 TIGR03079 CH4_NH3mon_ox_B meth 43.0 43 0.00094 34.1 5.1 48 51-104 101-150 (399)
88 COG0329 DapA Dihydrodipicolina 42.7 3.2E+02 0.0069 27.2 11.4 20 225-244 20-39 (299)
89 PF03198 Glyco_hydro_72: Gluca 41.5 3.8E+02 0.0083 26.9 16.2 225 200-466 60-310 (314)
90 PF07611 DUF1574: Protein of u 41.1 26 0.00055 35.7 3.3 64 227-298 249-312 (345)
91 PRK09485 mmuM homocysteine met 40.9 89 0.0019 31.2 7.1 47 351-407 142-191 (304)
92 PRK12569 hypothetical protein; 40.8 2E+02 0.0043 27.9 9.0 91 230-332 47-147 (245)
93 cd00152 PTX Pentraxins are pla 40.7 1.3E+02 0.0028 27.8 7.8 15 55-69 29-43 (201)
94 PF00701 DHDPS: Dihydrodipicol 39.8 2E+02 0.0044 28.1 9.5 20 225-244 17-36 (289)
95 PF02369 Big_1: Bacterial Ig-l 39.8 23 0.00049 29.1 2.2 23 153-175 24-46 (100)
96 PF14701 hDGE_amylase: glucano 38.3 81 0.0018 33.1 6.4 82 232-328 338-423 (423)
97 PRK14042 pyruvate carboxylase 37.6 4.1E+02 0.009 29.3 12.0 28 273-300 96-123 (596)
98 cd06547 GH85_ENGase Endo-beta- 37.5 61 0.0013 33.0 5.3 92 234-331 50-145 (339)
99 PRK12331 oxaloacetate decarbox 37.0 4.6E+02 0.0099 27.8 12.0 106 273-401 96-202 (448)
100 COG5016 Pyruvate/oxaloacetate 36.7 4.6E+02 0.01 27.5 11.2 107 273-402 98-205 (472)
101 COG1540 Uncharacterized protei 36.6 2.8E+02 0.006 26.7 9.0 91 230-332 44-144 (252)
102 TIGR01235 pyruv_carbox pyruvat 36.0 4.5E+02 0.0098 31.5 12.8 109 275-401 627-737 (1143)
103 COG2160 AraA L-arabinose isome 35.8 1E+02 0.0022 32.0 6.4 64 369-436 11-80 (497)
104 PF00775 Dioxygenase_C: Dioxyg 35.5 28 0.00061 32.1 2.4 26 154-179 30-55 (183)
105 PRK12999 pyruvate carboxylase; 35.3 3.8E+02 0.0082 32.2 12.1 110 276-402 630-740 (1146)
106 cd00952 CHBPH_aldolase Trans-o 35.2 4.5E+02 0.0096 26.2 11.2 54 224-291 23-79 (309)
107 PF13115 YtkA: YtkA-like 35.1 45 0.00099 26.1 3.3 25 155-180 23-47 (86)
108 PF02383 Syja_N: SacI homology 34.8 95 0.0021 31.1 6.3 80 244-336 216-307 (319)
109 cd03459 3,4-PCD Protocatechuat 34.5 36 0.00077 30.6 2.8 25 155-179 17-41 (158)
110 cd00408 DHDPS-like Dihydrodipi 33.6 4.5E+02 0.0098 25.4 11.6 22 224-245 12-33 (281)
111 PF07675 Cleaved_Adhesin: Clea 33.6 3.5E+02 0.0077 24.2 9.6 76 52-132 69-167 (167)
112 PF07210 DUF1416: Protein of u 33.1 1E+02 0.0022 24.6 4.7 19 62-80 23-41 (85)
113 cd00954 NAL N-Acetylneuraminic 32.8 4.8E+02 0.01 25.5 11.7 20 225-244 16-36 (288)
114 PRK12330 oxaloacetate decarbox 30.8 6.8E+02 0.015 27.0 12.1 27 273-299 97-123 (499)
115 TIGR02423 protocat_alph protoc 30.6 44 0.00095 31.1 2.8 27 154-180 40-66 (193)
116 smart00159 PTX Pentraxin / C-r 30.4 2.4E+02 0.0051 26.3 7.8 16 55-70 29-44 (206)
117 COG3534 AbfA Alpha-L-arabinofu 29.9 7E+02 0.015 26.5 12.7 106 214-337 94-215 (501)
118 PF03659 Glyco_hydro_71: Glyco 29.8 2.4E+02 0.0053 29.2 8.4 75 348-428 16-92 (386)
119 cd03463 3,4-PCD_alpha Protocat 29.5 48 0.001 30.7 2.8 26 154-179 37-62 (185)
120 cd00945 Aldolase_Class_I Class 29.5 4.1E+02 0.0089 23.7 10.1 78 349-434 65-148 (201)
121 PRK10785 maltodextrin glucosid 29.0 2.2E+02 0.0048 31.4 8.4 51 281-334 317-372 (598)
122 PRK05406 LamB/YcsF family prot 28.7 3.8E+02 0.0083 26.0 8.8 91 230-332 44-144 (246)
123 cd06563 GH20_chitobiase-like T 28.4 97 0.0021 31.7 5.2 70 218-289 74-167 (357)
124 PF11958 DUF3472: Domain of un 28.3 3.5E+02 0.0076 24.8 8.4 23 46-68 51-73 (184)
125 COG3485 PcaH Protocatechuate 3 28.2 61 0.0013 31.0 3.3 26 154-179 73-98 (226)
126 PRK09282 pyruvate carboxylase 28.1 8.3E+02 0.018 26.9 12.5 26 274-299 97-122 (592)
127 COG3804 Uncharacterized conser 28.0 91 0.002 30.9 4.5 48 196-249 82-130 (350)
128 PRK03170 dihydrodipicolinate s 27.9 5.8E+02 0.013 24.9 11.4 20 225-244 17-36 (292)
129 cd00421 intradiol_dioxygenase 27.8 64 0.0014 28.4 3.3 27 154-180 12-38 (146)
130 PRK14041 oxaloacetate decarbox 26.9 8E+02 0.017 26.2 12.5 27 273-299 95-121 (467)
131 cd06810 PLPDE_III_ODC_DapDC_li 26.8 3.8E+02 0.0083 27.0 9.3 87 313-406 102-207 (368)
132 PLN02417 dihydrodipicolinate s 25.8 6.3E+02 0.014 24.7 16.5 23 223-245 15-37 (280)
133 PF02065 Melibiase: Melibiase; 25.2 7.9E+02 0.017 25.6 13.7 121 203-332 69-232 (394)
134 smart00758 PA14 domain in bact 25.0 3.7E+02 0.0079 22.7 7.6 36 98-134 46-81 (136)
135 KOG3625 Alpha amylase [Carbohy 24.9 4.3E+02 0.0093 30.8 9.3 87 232-333 471-563 (1521)
136 PF13385 Laminin_G_3: Concanav 24.6 4.1E+02 0.0089 22.1 8.8 17 55-71 20-36 (157)
137 TIGR01108 oadA oxaloacetate de 24.0 9.9E+02 0.021 26.3 12.6 27 273-299 91-117 (582)
138 cd06564 GH20_DspB_LnbB-like Gl 23.7 83 0.0018 31.7 3.6 65 221-287 73-155 (326)
139 PF11141 DUF2914: Protein of u 23.7 52 0.0011 24.9 1.6 44 127-171 18-61 (66)
140 PRK08645 bifunctional homocyst 22.5 3.3E+02 0.0072 30.1 8.3 86 312-406 83-174 (612)
141 PRK12581 oxaloacetate decarbox 22.5 9.6E+02 0.021 25.6 11.5 61 227-300 70-132 (468)
142 TIGR02439 catechol_proteo cate 22.3 73 0.0016 31.6 2.8 28 154-181 129-156 (285)
143 PF13313 DUF4082: Domain of un 22.3 1.1E+02 0.0023 27.4 3.5 19 46-64 77-95 (149)
144 cd03460 1,2-CTD Catechol 1,2 d 22.0 74 0.0016 31.5 2.7 26 155-180 126-151 (282)
145 KOG2233 Alpha-N-acetylglucosam 22.0 1.9E+02 0.0041 30.9 5.7 101 232-337 156-285 (666)
146 COG5520 O-Glycosyl hydrolase [ 22.0 2E+02 0.0043 29.5 5.7 55 233-294 156-215 (433)
147 cd03464 3,4-PCD_beta Protocate 21.9 94 0.002 29.6 3.3 27 155-181 67-93 (220)
148 COG1182 AcpD Acyl carrier prot 21.4 3.7E+02 0.0081 25.2 7.0 109 272-408 19-129 (202)
149 TIGR02438 catachol_actin catec 21.3 78 0.0017 31.3 2.7 26 154-179 133-158 (281)
150 PF05089 NAGLU: Alpha-N-acetyl 21.1 1.9E+02 0.0041 29.3 5.4 97 231-334 96-218 (333)
151 TIGR02422 protocat_beta protoc 21.0 1E+02 0.0022 29.4 3.3 26 155-180 62-87 (220)
152 cd03462 1,2-CCD chlorocatechol 20.8 95 0.0021 30.1 3.1 26 155-180 101-126 (247)
153 TIGR01033 DNA-binding regulato 20.5 2.8E+02 0.006 26.7 6.3 52 382-433 177-234 (238)
154 TIGR01114 mtrH N5-methyltetrah 20.5 7.4E+02 0.016 24.9 9.2 166 223-419 45-240 (314)
155 PF03662 Glyco_hydro_79n: Glyc 20.4 1.4E+02 0.0029 30.2 4.3 22 227-248 106-127 (319)
156 cd03458 Catechol_intradiol_dio 20.4 98 0.0021 30.2 3.2 26 154-179 105-130 (256)
157 TIGR02465 chlorocat_1_2 chloro 20.3 97 0.0021 30.0 3.1 27 154-180 99-125 (246)
158 TIGR01531 glyc_debranch glycog 20.3 2.4E+02 0.0052 34.3 6.7 87 232-333 451-541 (1464)
159 cd02811 IDI-2_FMN Isopentenyl- 20.3 8.8E+02 0.019 24.3 11.9 104 310-436 96-210 (326)
No 1
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=100.00 E-value=2.4e-68 Score=534.11 Aligned_cols=278 Identities=33% Similarity=0.612 Sum_probs=246.0
Q ss_pred eecCCcceEEeecCCCCCCH-HHHHHHHccccceeeCCCCCCcccccCCCCCCcchHHHHHHHHHhCCcEEEEeEeecCC
Q 042396 177 QKQLRFPFGCAINKNILTNT-AYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHNIAVRGHNIFWDD 255 (472)
Q Consensus 177 ~~~~~f~fG~av~~~~~~~~-~~~~~~~~~fn~vt~en~~kW~~~ep~~g~~~~~~~D~~v~~a~~~gi~vrGH~lvW~~ 255 (472)
+.++.|.||+|++...+.+. .|++++.++||.+|+||+|||..+||.+|+|+|+.+|++++||++|||+||||+|+||.
T Consensus 5 ~~~~~f~~G~av~~~~~~~~~~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~~~D~~~~~a~~~g~~vrGH~LvW~~ 84 (320)
T PF00331_consen 5 AAKHKFPFGAAVNAQQLEDDPRYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFESADAILDWARENGIKVRGHTLVWHS 84 (320)
T ss_dssp HHCTTTEEEEEEBGGGHTHHHHHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-HHHHHHHHHHHHTT-EEEEEEEEESS
T ss_pred HHhccCCEEEEechhHcCCcHHHHHHHHHhCCeeeeccccchhhhcCCCCccCccchhHHHHHHHhcCcceeeeeEEEcc
Confidence 46899999999999987764 89999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcccCCC---CHH---HHHHHHHHHHHHHhhhcC--CceEEEEeeccCcccc---------ccccccCchHHHHHH
Q 042396 256 PQYQPGWVNSL---SPS---DLSKAADKRINSVTSRYK--GQVIAWDVVNENLHFS---------FFESKLGQNASGVFF 318 (472)
Q Consensus 256 ~~~~P~W~~~~---~~~---~~~~~~~~~i~~v~~ry~--g~i~~WDVvNE~~~~~---------~~~~~~G~~~~~~af 318 (472)
++|+|+... +++ .++++|++||+++++||+ |+|.+||||||+++.+ .|.+.+|++|+..||
T Consensus 85 --~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~~yi~~aF 162 (320)
T PF00331_consen 85 --QTPDWVFNLANGSPDEKEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGPDYIADAF 162 (320)
T ss_dssp --SS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSSSSBCTSHHHHHHTTCHHHHHH
T ss_pred --cccceeeeccCCCcccHHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCCccccccCChhhhcccHhHHHHHH
Confidence 799999875 544 499999999999999999 7999999999998764 589999999999999
Q ss_pred HHHHhhCCCCeEEEeccCCcccCCCCCCCHHHHHHHHHHHhcCcCCCCCc-ceeeeccccCC-CCHHHHHHHHHHHHhcC
Q 042396 319 NRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLRQISEFPGNQNLR-IGIGLESHFST-PNIPYMRASIDTLGATG 396 (472)
Q Consensus 319 ~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~-DgIG~Q~H~~~-p~~~~~~~~l~~~a~~g 396 (472)
++||+++|+++|||||||++. + .+...++++|+.|++ +|+| ||||+|+|+.. ..++.+.++|++|+++|
T Consensus 163 ~~A~~~~P~a~L~~NDy~~~~-~----~k~~~~~~lv~~l~~----~gvpIdgIG~Q~H~~~~~~~~~i~~~l~~~~~~G 233 (320)
T PF00331_consen 163 RAAREADPNAKLFYNDYNIES-P----AKRDAYLNLVKDLKA----RGVPIDGIGLQSHFDAGYPPEQIWNALDRFASLG 233 (320)
T ss_dssp HHHHHHHTTSEEEEEESSTTS-T----HHHHHHHHHHHHHHH----TTHCS-EEEEEEEEETTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHhCCCcEEEeccccccc-h----HHHHHHHHHHHHHHh----CCCccceechhhccCCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999743 3 257889999999999 9998 99999999987 33789999999999999
Q ss_pred CCEEEeeeccCCCc---------hHHHHHHHHHHHHHcCC--CeeEEEEEceecCCCCC-c-----cccccCCCCcchHH
Q 042396 397 LPIWLTEVDVQSSP---------NQAQYLEQILREAHAHP--KVQGIVVWAAWKPSGCY-R-----MCLTDNNFKNLATG 459 (472)
Q Consensus 397 ~pi~iTE~dv~~~~---------~qA~~~~~~~~~~~s~p--~v~gi~~Wg~w~~~~~~-~-----~~L~d~d~~pKPa~ 459 (472)
+||+||||||.... .||++|++++++|++|| +|+||++||++|...+. . ++|||.|++|||||
T Consensus 234 l~i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~~~v~git~Wg~~D~~sW~~~~~~~~~~lfd~~~~~Kpa~ 313 (320)
T PF00331_consen 234 LPIHITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSHPPAAVEGITWWGFTDGYSWRPDTPPDRPLLFDEDYQPKPAY 313 (320)
T ss_dssp SEEEEEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHTTHCTEEEEEESSSBTTGSTTGGHSEG--SSB-TTSBB-HHH
T ss_pred CceEEEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhCCccCCCEEEEECCCCCCcccCCCCCCCCeeECCCcCCCHHH
Confidence 99999999998762 69999999999999999 99999999999987653 2 79999999999999
Q ss_pred HHHHHH
Q 042396 460 DVVDKL 465 (472)
Q Consensus 460 ~~~~~l 465 (472)
+++.+-
T Consensus 314 ~~~~~a 319 (320)
T PF00331_consen 314 DAIVDA 319 (320)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998763
No 2
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.2e-63 Score=474.00 Aligned_cols=256 Identities=31% Similarity=0.558 Sum_probs=226.3
Q ss_pred HHHHccccceeeCCCCCCcccccCCCCCCcchHHHHHHHHHhCCcEEEEeEeecCCCCCCCcccCC--CCHHHHHHHHHH
Q 042396 200 NWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVNS--LSPSDLSKAADK 277 (472)
Q Consensus 200 ~~~~~~fn~vt~en~~kW~~~ep~~g~~~~~~~D~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~~~--~~~~~~~~~~~~ 277 (472)
+..+++||.+|+||+|||+.++|++|.|||+.+|++++||++|||++||||||||+ |.|+|+.. ++++.+.++|++
T Consensus 52 ~~~~re~n~iTpenemKwe~i~p~~G~f~Fe~AD~ia~FAr~h~m~lhGHtLvW~~--q~P~W~~~~e~~~~~~~~~~e~ 129 (345)
T COG3693 52 KYYARECNQITPENEMKWEAIEPERGRFNFEAADAIANFARKHNMPLHGHTLVWHS--QVPDWLFGDELSKEALAKMVEE 129 (345)
T ss_pred HHHHhhhcccccccccccccccCCCCccCccchHHHHHHHHHcCCeeccceeeecc--cCCchhhccccChHHHHHHHHH
Confidence 33489999999999999999999999999999999999999999999999999998 69999998 789999999999
Q ss_pred HHHHHhhhcCCceEEEEeeccCccc------ccccc-ccCchHHHHHHHHHHhhCCCCeEEEeccCCcccCCCCCCCHHH
Q 042396 278 RINSVTSRYKGQVIAWDVVNENLHF------SFFES-KLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAM 350 (472)
Q Consensus 278 ~i~~v~~ry~g~i~~WDVvNE~~~~------~~~~~-~~G~~~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~ 350 (472)
||.+|++||+|++..||||||++++ +.|++ ..|+|||+.+|+.||++||+|+||||||++ +.+. .++..
T Consensus 130 hI~tV~~rYkg~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~NDY~i-e~~~---~kr~~ 205 (345)
T COG3693 130 HIKTVVGRYKGSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVINDYSI-EGNP---AKRNY 205 (345)
T ss_pred HHHHHHHhccCceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEeecccc-cCCh---HHHHH
Confidence 9999999999999999999999863 57888 779999999999999999999999999985 4332 25677
Q ss_pred HHHHHHHHhcCcCCCCCc-ceeeeccccCC--CCHHHHHHHHHHHHhcCCCEEEeeeccCCC------c-----hHHHHH
Q 042396 351 YLQKLRQISEFPGNQNLR-IGIGLESHFST--PNIPYMRASIDTLGATGLPIWLTEVDVQSS------P-----NQAQYL 416 (472)
Q Consensus 351 ~~~~~~~l~~~~~~~G~~-DgIG~Q~H~~~--p~~~~~~~~l~~~a~~g~pi~iTE~dv~~~------~-----~qA~~~ 416 (472)
++++|++|++ +|+| ||||+|+|+.. |+...++..|.+++.+|+||+||||||+.. | .|+. +
T Consensus 206 ~~nlI~~Lke----kG~pIDgiG~QsH~~~~~~~~~~~~~a~~~~~k~Gl~i~VTELD~~~~~P~~~~p~~~~~~~~~-~ 280 (345)
T COG3693 206 VLNLIEELKE----KGAPIDGIGIQSHFSGDGPSIEKMRAALLKFSKLGLPIYVTELDMSDYTPDSGAPRLYLQKAAS-R 280 (345)
T ss_pred HHHHHHHHHH----CCCCccceeeeeeecCCCCCHHHHHHHHHHHhhcCCCceEEEeeeeccCCCCccHHHHHHHHHH-H
Confidence 8899999999 9998 99999999987 788899999999999999999999999873 1 2333 5
Q ss_pred HHHHHHHHcCCC-eeEEEEEceecCCCC----------CccccccCCCCcchHHHHHHHHH
Q 042396 417 EQILREAHAHPK-VQGIVVWAAWKPSGC----------YRMCLTDNNFKNLATGDVVDKLL 466 (472)
Q Consensus 417 ~~~~~~~~s~p~-v~gi~~Wg~w~~~~~----------~~~~L~d~d~~pKPa~~~~~~li 466 (472)
.+.+..+...|+ |++||+||+-|...| ..+.|||.+++|||+|.++.+.+
T Consensus 281 ~~~f~~~~~~~~~v~~it~WGi~D~ySWl~g~~~~~~~~rPl~~D~n~~pKPa~~aI~e~l 341 (345)
T COG3693 281 AKAFLLLLLNPNQVKAITFWGITDRYSWLRGRDPRRDGLRPLLFDDNYQPKPAYKAIAEVL 341 (345)
T ss_pred HHHHHHHHhcccccceEEEeeeccCcccccCCccCcCCCCCcccCCCCCcchHHHHHHHHh
Confidence 556666777777 999999997554321 14899999999999999998665
No 3
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=100.00 E-value=3.1e-58 Score=447.93 Aligned_cols=238 Identities=37% Similarity=0.618 Sum_probs=219.8
Q ss_pred CCCcccccCCCCCCcchHHHHHHHHHhCCcEEEEeEeecCCCCCCCcccCCCCHHHHHHHHHHHHHHHhhhcCCceEEEE
Q 042396 215 MKWYSTEASPGREDYSASDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVNSLSPSDLSKAADKRINSVTSRYKGQVIAWD 294 (472)
Q Consensus 215 ~kW~~~ep~~g~~~~~~~D~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~~~~~~~~~~~~~~~~i~~v~~ry~g~i~~WD 294 (472)
|||..+||++|+|||+.+|++++||+++||++|||+|+||. +.|+|+...+++++++++.+||+++++||+|+|..||
T Consensus 1 ~kW~~~ep~~G~~n~~~~D~~~~~a~~~gi~v~gH~l~W~~--~~P~W~~~~~~~~~~~~~~~~i~~v~~ry~g~i~~wd 78 (254)
T smart00633 1 MKWDSTEPSRGQFNFSGADAIVNFAKENGIKVRGHTLVWHS--QTPDWVFNLSKETLLARLENHIKTVVGRYKGKIYAWD 78 (254)
T ss_pred CCcccccCCCCccChHHHHHHHHHHHHCCCEEEEEEEeecc--cCCHhhhcCCHHHHHHHHHHHHHHHHHHhCCcceEEE
Confidence 79999999999999999999999999999999999999997 6999999888999999999999999999999999999
Q ss_pred eeccCcccc-------ccccccCchHHHHHHHHHHhhCCCCeEEEeccCCcccCCCCCCCHHHHHHHHHHHhcCcCCCCC
Q 042396 295 VVNENLHFS-------FFESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLRQISEFPGNQNL 367 (472)
Q Consensus 295 VvNE~~~~~-------~~~~~~G~~~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~ 367 (472)
|||||++.+ .|.+.+|++|+..+|++||+++|+++|++|||++.. +. .+...|+++++.|++ +|+
T Consensus 79 V~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy~~~~-~~---~k~~~~~~~v~~l~~----~g~ 150 (254)
T smart00633 79 VVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDYNTEE-PN---AKRQAIYELVKKLKA----KGV 150 (254)
T ss_pred EeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEeccCCcC-cc---HHHHHHHHHHHHHHH----CCC
Confidence 999998754 788999999999999999999999999999999743 32 246789999999999 999
Q ss_pred c-ceeeeccccCC--CCHHHHHHHHHHHHhcCCCEEEeeeccCCCc---hHHHHHHHHHHHHHcCCCeeEEEEEceecCC
Q 042396 368 R-IGIGLESHFST--PNIPYMRASIDTLGATGLPIWLTEVDVQSSP---NQAQYLEQILREAHAHPKVQGIVVWAAWKPS 441 (472)
Q Consensus 368 ~-DgIG~Q~H~~~--p~~~~~~~~l~~~a~~g~pi~iTE~dv~~~~---~qA~~~~~~~~~~~s~p~v~gi~~Wg~w~~~ 441 (472)
| ||||+|+|+.. |+++.+.+.|++|+++|+||+|||+|++..+ .||++|+++++++++||+|+||++||++|..
T Consensus 151 ~iDgiGlQ~H~~~~~~~~~~~~~~l~~~~~~g~pi~iTE~dv~~~~~~~~qA~~~~~~l~~~~~~p~v~gi~~Wg~~d~~ 230 (254)
T smart00633 151 PIDGIGLQSHLSLGSPNIAEIRAALDRFASLGLEIQITELDISGYPNPQAQAADYEEVFKACLAHPAVTGVTVWGVTDKY 230 (254)
T ss_pred ccceeeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEeecCCCCcHHHHHHHHHHHHHHHHcCCCeeEEEEeCCccCC
Confidence 8 99999999975 7888999999999999999999999998763 7999999999999999999999999999876
Q ss_pred CCC---ccccccCCCCcchHHHHH
Q 042396 442 GCY---RMCLTDNNFKNLATGDVV 462 (472)
Q Consensus 442 ~~~---~~~L~d~d~~pKPa~~~~ 462 (472)
++. +++|||.|++|||||+++
T Consensus 231 ~W~~~~~~~L~d~~~~~kpa~~~~ 254 (254)
T smart00633 231 SWLDGGAPLLFDANYQPKPAYWAV 254 (254)
T ss_pred cccCCCCceeECCCCCCChhhhcC
Confidence 542 479999999999999864
No 4
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.68 E-value=4.6e-15 Score=147.95 Aligned_cols=246 Identities=20% Similarity=0.270 Sum_probs=173.1
Q ss_pred HHHHH-ccccceeeCCCCCCcccccCC-CCCCcchHHHHHHHHHhCCcEEE--EeEe-ecCCCC--CCC-cccCCCCHHH
Q 042396 199 QNWFT-SRFKVTAFEDEMKWYSTEASP-GREDYSASDAMLQFAKNHNIAVR--GHNI-FWDDPQ--YQP-GWVNSLSPSD 270 (472)
Q Consensus 199 ~~~~~-~~fn~vt~en~~kW~~~ep~~-g~~~~~~~D~~v~~a~~~gi~vr--GH~l-vW~~~~--~~P-~W~~~~~~~~ 270 (472)
-++++ .++|.|+++ + ...|.. |..+.+.+-++...|+++||+|. .|-- .|..+. ..| .|. .++.++
T Consensus 30 ~~ilk~~G~N~vRlR--v---wv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~-~~~~~~ 103 (332)
T PF07745_consen 30 FQILKDHGVNAVRLR--V---WVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWA-NLSFDQ 103 (332)
T ss_dssp HHHHHHTT--EEEEE--E----SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCT-SSSHHH
T ss_pred HHHHHhcCCCeEEEE--e---ccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCC-CCCHHH
Confidence 45554 689999985 2 345655 89999999999999999999985 3322 355443 244 354 468899
Q ss_pred HHHHHHHHHHHHhhhcCC---ceEEEEeeccCccccccccccCc------hHHHHHHHHHHhhCCCCeEEEeccCCcccC
Q 042396 271 LSKAADKRINSVTSRYKG---QVIAWDVVNENLHFSFFESKLGQ------NASGVFFNRVHSLDGATTLFMNDYNTIEDS 341 (472)
Q Consensus 271 ~~~~~~~~i~~v~~ry~g---~i~~WDVvNE~~~~~~~~~~~G~------~~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~ 341 (472)
|.+++.+|.+.+++..+. .+..+.|-||...+-.|...-.. .++..+++++|+.+|++++.+.- +.+
T Consensus 104 l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~----~~~ 179 (332)
T PF07745_consen 104 LAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHL----ANG 179 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEE----S-T
T ss_pred HHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEE----CCC
Confidence 999999999999998763 67888999998766555322122 35789999999999999999983 333
Q ss_pred CCCCCCHHHHHHHHHHHhcCcCCCCCc-ceeeeccccCC-CCHHHHHHHHHHHH-hcCCCEEEeeeccCCC---------
Q 042396 342 RDGKATPAMYLQKLRQISEFPGNQNLR-IGIGLESHFST-PNIPYMRASIDTLG-ATGLPIWLTEVDVQSS--------- 409 (472)
Q Consensus 342 ~~~~~~~~~~~~~~~~l~~~~~~~G~~-DgIG~Q~H~~~-p~~~~~~~~l~~~a-~~g~pi~iTE~dv~~~--------- 409 (472)
.+ ...+...++.|++ .|+. |.||+..++.- .++..++..|+.++ ++|+||.|+|.+.+..
T Consensus 180 ~~----~~~~~~~f~~l~~----~g~d~DviGlSyYP~w~~~l~~l~~~l~~l~~ry~K~V~V~Et~yp~t~~d~D~~~n 251 (332)
T PF07745_consen 180 GD----NDLYRWFFDNLKA----AGVDFDVIGLSYYPFWHGTLEDLKNNLNDLASRYGKPVMVVETGYPWTLDDGDGTGN 251 (332)
T ss_dssp TS----HHHHHHHHHHHHH----TTGG-SEEEEEE-STTST-HHHHHHHHHHHHHHHT-EEEEEEE---SBS--SSSS--
T ss_pred Cc----hHHHHHHHHHHHh----cCCCcceEEEecCCCCcchHHHHHHHHHHHHHHhCCeeEEEeccccccccccccccc
Confidence 32 3466667788888 8988 99999665543 56888999999986 6899999999987643
Q ss_pred --------------c-hHHHHHHHHHHHHHcCC--CeeEEEEEce-ecC----------CCCCccccccCCCCcchHHHH
Q 042396 410 --------------P-NQAQYLEQILREAHAHP--KVQGIVVWAA-WKP----------SGCYRMCLTDNNFKNLATGDV 461 (472)
Q Consensus 410 --------------~-~qA~~~~~~~~~~~s~p--~v~gi~~Wg~-w~~----------~~~~~~~L~d~d~~pKPa~~~ 461 (472)
+ -|+++++++++.+.+.| .+.||.+|.. |.+ ..+.+.+|||.++++.|+.++
T Consensus 252 ~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~~~g~GvfYWeP~w~~~~~~~~~~~g~~w~n~~lFD~~g~~l~sl~~ 331 (332)
T PF07745_consen 252 IIGATSLISGYPATPQGQADFLRDLINAVKNVPNGGGLGVFYWEPAWIPVENGWDWGGGSSWDNQALFDFNGNALPSLDV 331 (332)
T ss_dssp SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS--TTEEEEEEE-TT-GGGTTHHHHTTTSSSSBGSSB-TTSBB-GGGGH
T ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHHHHhccCCeEEEEeeccccccCCcccccCCCCCccccccCCCCCCCchHhhc
Confidence 1 59999999999999986 6899999983 433 135578999999999999876
Q ss_pred H
Q 042396 462 V 462 (472)
Q Consensus 462 ~ 462 (472)
+
T Consensus 332 f 332 (332)
T PF07745_consen 332 F 332 (332)
T ss_dssp H
T ss_pred C
Confidence 4
No 5
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=99.49 E-value=1.3e-12 Score=113.39 Aligned_cols=108 Identities=29% Similarity=0.529 Sum_probs=81.4
Q ss_pred CceeeCCCCCC-CCCCeeEecce--EEEEecCCCcee-----------eeeE--EEeeecCCEEEEEEEEEecCCCccEE
Q 042396 12 GGIIKNPELSH-GLKGWSAFGNA--KIEQRESGGNNS-----------CISQ--KVYLEKNKFYTLSAWIQVSEGAAPVT 75 (472)
Q Consensus 12 ~~li~n~~FE~-g~~gW~~~g~~--~~~~~~~~G~~~-----------g~~~--~~~l~~G~~Y~~SawVk~~~g~~~~~ 75 (472)
.|||.|++||+ ++.+|...++. ...+..++|+++ +..+ .+.|++|++|+||+|||...+ ..+.
T Consensus 1 ~nli~N~~Fe~~~~~~W~~~~~~~~~~~~~~~~g~~~l~v~~~~~~~~~~~~~~~~~l~~G~~Y~~s~~vk~~~~-~~~~ 79 (131)
T PF02018_consen 1 GNLIKNGGFEDGGLSGWSFWGNSGASASVDNASGNYSLKVSNRSATWDGQSQQQTISLKPGKTYTVSFWVKADSG-GTVS 79 (131)
T ss_dssp GBSSSSTTSTTTSTTTEEEESSTTEEEEEEECSSSEEEEEECCSSGCGEEEEEEEEEE-TTSEEEEEEEEEESSS-EEEE
T ss_pred CCEEECCCccCCCCCCCEEccCCCEEEEEEcCCCeEEEEEECCCCCccccceecceEecCCCEEEEEEEEEeCCC-CEEE
Confidence 48999999999 59999999875 444443455433 3333 359999999999999999986 6688
Q ss_pred EEEEE-CC-eEEEeee-EEEeCCCeEEEEeeEeeCCC-ccEEEEEEeCC
Q 042396 76 AVFKT-IT-GFKHAGA-AVAESKCWSMLKGGLSPDAS-GFAELYFESKN 120 (472)
Q Consensus 76 ~~~~~-~~-~~~~~~~-~~v~~~~W~~l~g~~t~~~~-~~~~iy~e~~~ 120 (472)
+.+.. ++ .+..... ....+++|++++++||++.+ ..+.|+|+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~W~~~s~~ft~~~~~~~~~l~~~~~~ 128 (131)
T PF02018_consen 80 VSLRDEDGSPYNWYTGQTVTITGEWTKYSGTFTAPSDDDTVRLYFEIGP 128 (131)
T ss_dssp EEEEESSTTTEEEEEEEEEEETSSEEEEEEEEEEESSCEEEEEEEEES-
T ss_pred EEEEEcCCCCcEEEEEEEEECCCCcEEEEEEEEECCCCceEEEEEEecC
Confidence 88877 44 4554433 55667999999999999954 78899999853
No 6
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.47 E-value=4e-12 Score=124.90 Aligned_cols=239 Identities=18% Similarity=0.263 Sum_probs=153.1
Q ss_pred ecCCCCcccCcceeeeeecCCcceEEeecCCC--CCCHHHHHHHHccccceeeCCCCCCcccc-cCCCC-C---CcchHH
Q 042396 161 VDKQGKPLQNANISIEQKQLRFPFGCAINKNI--LTNTAYQNWFTSRFKVTAFEDEMKWYSTE-ASPGR-E---DYSASD 233 (472)
Q Consensus 161 ~~~~g~p~~~~~v~v~~~~~~f~fG~av~~~~--~~~~~~~~~~~~~fn~vt~en~~kW~~~e-p~~g~-~---~~~~~D 233 (472)
||.+|+++. .+|...+... ..++.+..+-..+||.|++ .+-|..++ +.++. + .++..|
T Consensus 1 ~~~~G~~v~-------------~~G~n~~w~~~~~~~~~~~~~~~~G~n~VRi--~v~~~~~~~~~~~~~~~~~~~~~ld 65 (281)
T PF00150_consen 1 VDQNGKPVN-------------WRGFNTHWYNPSITEADFDQLKALGFNTVRI--PVGWEAYQEPNPGYNYDETYLARLD 65 (281)
T ss_dssp ECTTSEBEE-------------EEEEEETTSGGGSHHHHHHHHHHTTESEEEE--EEESTSTSTTSTTTSBTHHHHHHHH
T ss_pred CCCCCCeEE-------------eeeeecccCCCCCHHHHHHHHHHCCCCEEEe--CCCHHHhcCCCCCccccHHHHHHHH
Confidence 467777763 4566666321 2223344444579999999 78897666 55553 2 345789
Q ss_pred HHHHHHHhCCcEEEEeEeecCCCCCCCcccCC----CCHHHHHHHHHHHHHHHhhhcCC--ceEEEEeeccCccccc---
Q 042396 234 AMLQFAKNHNIAVRGHNIFWDDPQYQPGWVNS----LSPSDLSKAADKRINSVTSRYKG--QVIAWDVVNENLHFSF--- 304 (472)
Q Consensus 234 ~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~~~----~~~~~~~~~~~~~i~~v~~ry~g--~i~~WDVvNE~~~~~~--- 304 (472)
++|++|.++||.|. |.+|. .|.|... .......+.+.++++.+++||++ .|..||++|||.....
T Consensus 66 ~~v~~a~~~gi~vi---ld~h~---~~~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~ 139 (281)
T PF00150_consen 66 RIVDAAQAYGIYVI---LDLHN---APGWANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDAN 139 (281)
T ss_dssp HHHHHHHHTT-EEE---EEEEE---STTCSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTT
T ss_pred HHHHHHHhCCCeEE---EEecc---CccccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccc
Confidence 99999999999984 55554 4788432 23455677788899999999965 7889999999976432
Q ss_pred cccccC---chHHHHHHHHHHhhCCCCeEEEeccCCcccCCCCCCCHHHHHHHHHHHhcCcCCCCCc-ceeeeccccCCC
Q 042396 305 FESKLG---QNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLRQISEFPGNQNLR-IGIGLESHFSTP 380 (472)
Q Consensus 305 ~~~~~G---~~~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~-DgIG~Q~H~~~p 380 (472)
|..... .+++..+++++|+++|+..+++.+.+- ... ..... .. . +. .... +.+.+ |++.+
T Consensus 140 w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~~~~-~~~------~~~~~---~~--~-P~-~~~~~~~~~~--H~Y~~ 203 (281)
T PF00150_consen 140 WNAQNPADWQDWYQRAIDAIRAADPNHLIIVGGGGW-GAD------PDGAA---AD--N-PN-DADNNDVYSF--HFYDP 203 (281)
T ss_dssp TSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEEHHH-HTB------HHHHH---HH--S-TT-TTTTSEEEEE--EEETT
T ss_pred cccccchhhhhHHHHHHHHHHhcCCcceeecCCCcc-ccc------cchhh---hc--C-cc-cccCceeEEe--eEeCC
Confidence 411111 246789999999999999999987321 100 11101 11 1 10 1112 55555 66542
Q ss_pred C-----------------HHHHHHHHHHHHhcCCCEEEeeeccCCCc--hHHHHHHHHHHHHHcCCCeeEEEEEcee
Q 042396 381 N-----------------IPYMRASIDTLGATGLPIWLTEVDVQSSP--NQAQYLEQILREAHAHPKVQGIVVWAAW 438 (472)
Q Consensus 381 ~-----------------~~~~~~~l~~~a~~g~pi~iTE~dv~~~~--~qA~~~~~~~~~~~s~p~v~gi~~Wg~w 438 (472)
. ...+...+..+.+.|+||+|+|+++.... ...++...++..+.++ .+ |.++|.+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~pv~~gE~G~~~~~~~~~~~~~~~~~~~~~~~-~~-g~~~W~~~ 278 (281)
T PF00150_consen 204 YDFSDQWNPGNWGDASALESSFRAALNWAKKNGKPVVVGEFGWSNNDGNGSTDYADAWLDYLEQN-GI-GWIYWSWK 278 (281)
T ss_dssp TCHHTTTSTCSHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSTTTSCHHHHHHHHHHHHHHHT-TC-EEEECEES
T ss_pred CCcCCccccccchhhhHHHHHHHHHHHHHHHcCCeEEEeCcCCcCCCCCcCHHHHHHHHHHHHHC-CC-eEEEEecC
Confidence 1 12355566666788999999999997432 2345566667766665 44 77888764
No 7
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.37 E-value=9.2e-12 Score=128.20 Aligned_cols=246 Identities=20% Similarity=0.237 Sum_probs=141.0
Q ss_pred HHHHccccceeeCCCCCCcccccCCCCCCcchHHHHHHHHHhCCcEEEEeEeecCCCCCCCcccCC--------------
Q 042396 200 NWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVNS-------------- 265 (472)
Q Consensus 200 ~~~~~~fn~vt~en~~kW~~~ep~~g~~~~~~~D~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~~~-------------- 265 (472)
.+-..+||.|++. .+.|..+||++|+|||+..|++++.|.++||+|.-- ... ...|.|+..
T Consensus 18 ~m~~~G~n~vri~-~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~---~~~-~~~P~Wl~~~~Pe~~~~~~~g~~ 92 (374)
T PF02449_consen 18 LMKEAGFNTVRIG-EFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILG---TPT-AAPPAWLYDKYPEILPVDADGRR 92 (374)
T ss_dssp HHHHHT-SEEEE--CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEE---ECT-TTS-HHHHCCSGCCC-B-TTTSB
T ss_pred HHHHcCCCEEEEE-EechhhccCCCCeeecHHHHHHHHHHHhccCeEEEE---ecc-cccccchhhhcccccccCCCCCc
Confidence 3335699999963 799999999999999999999999999999998632 222 247888742
Q ss_pred ----------CCHHHHHHHHHHHHHHHhhhcCC--ceEEEEeeccCcc-c------------------------------
Q 042396 266 ----------LSPSDLSKAADKRINSVTSRYKG--QVIAWDVVNENLH-F------------------------------ 302 (472)
Q Consensus 266 ----------~~~~~~~~~~~~~i~~v~~ry~g--~i~~WDVvNE~~~-~------------------------------ 302 (472)
.+.+..++.+.+.+++++.||++ .|..|+|.||+-. .
T Consensus 93 ~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~~~~~~~~~~~f~~wLk~kY~ti~~LN~aWgt 172 (374)
T PF02449_consen 93 RGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYHRCYSPACQAAFRQWLKEKYGTIEALNRAWGT 172 (374)
T ss_dssp EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCTS--SHHHHHHHHHHHHHHHSSHHHHHHHHTT
T ss_pred CccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcCcCCChHHHHHHHHHHHHHhCCHHHHHHHHcC
Confidence 13467789999999999999997 5999999999732 0
Q ss_pred cc-------ccccc-----C----c---------------hHHHHHHHHHHhhCCCCeEEEeccCCcccCCCCCCCHHHH
Q 042396 303 SF-------FESKL-----G----Q---------------NASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMY 351 (472)
Q Consensus 303 ~~-------~~~~~-----G----~---------------~~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~ 351 (472)
.+ |.++. + + +++....+++|+.+|+..+..|-+... . . ..++
T Consensus 173 ~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir~~~p~~~vt~n~~~~~-~-~-----~~d~ 245 (374)
T PF02449_consen 173 AFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIREYDPDHPVTTNFMGSW-F-N-----GIDY 245 (374)
T ss_dssp TGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-EEE-EE-TT----------SS-H
T ss_pred CcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCccccc-c-C-----cCCH
Confidence 11 22211 0 0 233455678899999999988865430 0 0 1123
Q ss_pred HHHHHHHhcCcCCCCCcceeeeccccC---C---CCHHHHHHHHHHHH--hcCCCEEEeeeccCCC-------chHHHHH
Q 042396 352 LQKLRQISEFPGNQNLRIGIGLESHFS---T---PNIPYMRASIDTLG--ATGLPIWLTEVDVQSS-------PNQAQYL 416 (472)
Q Consensus 352 ~~~~~~l~~~~~~~G~~DgIG~Q~H~~---~---p~~~~~~~~l~~~a--~~g~pi~iTE~dv~~~-------~~qA~~~ 416 (472)
.+.. ...|.+|.-.+.. . .....+.-..+... ..|.|.+|+|.-.... ......+
T Consensus 246 ~~~a----------~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g~~~~~~~~~~~~pg~~ 315 (374)
T PF02449_consen 246 FKWA----------KYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPGPVNWRPYNRPPRPGEL 315 (374)
T ss_dssp HHHG----------GGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S--SSSSS-----TTHH
T ss_pred HHHH----------hhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCCCCCCccCCCCCCCCHH
Confidence 2211 1127788765555 1 11222333333333 5699999999855421 1111233
Q ss_pred HHHHHHHHcCCCeeEEEEEceecC-CC--CCccccccCCC-CcchHHHHHHHHHHH
Q 042396 417 EQILREAHAHPKVQGIVVWAAWKP-SG--CYRMCLTDNNF-KNLATGDVVDKLLHE 468 (472)
Q Consensus 417 ~~~~~~~~s~p~v~gi~~Wg~w~~-~~--~~~~~L~d~d~-~pKPa~~~~~~li~e 468 (472)
+...-.+++| +.+||.+|..... .| ..+.||++.|+ ++.+-|..+.+|-+|
T Consensus 316 ~~~~~~~~A~-Ga~~i~~~~wr~~~~g~E~~~~g~~~~dg~~~~~~~~e~~~~~~~ 370 (374)
T PF02449_consen 316 RLWSWQAIAH-GADGILFWQWRQSRFGAEQFHGGLVDHDGREPTRRYREVAQLGRE 370 (374)
T ss_dssp HHHHHHHHHT-T-S-EEEC-SB--SSSTTTTS--SB-TTS--B-HHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCCeeEeeeccCCCCCchhhhcccCCccCCCCCcHHHHHHHHHHH
Confidence 4444455666 8899999986432 22 24789999999 999999999998764
No 8
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=99.28 E-value=6.4e-11 Score=125.88 Aligned_cols=242 Identities=14% Similarity=0.122 Sum_probs=125.3
Q ss_pred ccccceeeCCCC--CCccccc--CCCC--CCcchHHHHHHHHHhCCcEEEEeEeecCCCCCCCcccCC-----------C
Q 042396 204 SRFKVTAFEDEM--KWYSTEA--SPGR--EDYSASDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVNS-----------L 266 (472)
Q Consensus 204 ~~fn~vt~en~~--kW~~~ep--~~g~--~~~~~~D~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~~~-----------~ 266 (472)
-+|..|++.|=| ....... ..|. |||+..|+++|++.++||+..-- | +..|.++.. .
T Consensus 52 ~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~ve-l-----~f~p~~~~~~~~~~~~~~~~~ 125 (486)
T PF01229_consen 52 LGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVE-L-----GFMPMALASGYQTVFWYKGNI 125 (486)
T ss_dssp S--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEE-E------SB-GGGBSS--EETTTTEE-
T ss_pred cCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEE-E-----EechhhhcCCCCccccccCCc
Confidence 379999998766 3333322 2332 99999999999999999998321 1 123433321 1
Q ss_pred CHHHHHHHHHHHHHHHh----hhcCC-ceE--EEEeeccCccccccccccCchH---HHHHHHHHHhhCCCCeEEEeccC
Q 042396 267 SPSDLSKAADKRINSVT----SRYKG-QVI--AWDVVNENLHFSFFESKLGQNA---SGVFFNRVHSLDGATTLFMNDYN 336 (472)
Q Consensus 267 ~~~~~~~~~~~~i~~v~----~ry~g-~i~--~WDVvNE~~~~~~~~~~~G~~~---~~~af~~Ar~~dP~a~L~~Ndy~ 336 (472)
+|+.-.+.+.+.|++++ .||+- .|. .|+|||||....+|....-.+| .+.+++++|+++|++++---.+.
T Consensus 126 ~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~p~~~vGGp~~~ 205 (486)
T PF01229_consen 126 SPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVDPELKVGGPAFA 205 (486)
T ss_dssp S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH-TTSEEEEEEEE
T ss_pred CCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhCCCCcccCcccc
Confidence 23333455555555554 55542 343 6799999987666653222344 57889999999999997532111
Q ss_pred CcccCCCCCCCHHHHHHHHHHHhcCcCCCCCc-ceeeeccccCC-----C-----CHHHHHHHH-------HHHHh---c
Q 042396 337 TIEDSRDGKATPAMYLQKLRQISEFPGNQNLR-IGIGLESHFST-----P-----NIPYMRASI-------DTLGA---T 395 (472)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~-DgIG~Q~H~~~-----p-----~~~~~~~~l-------~~~a~---~ 395 (472)
... ..-....++.+.. +++| |-|.++..... . .+..++..+ +.+.+ .
T Consensus 206 ---~~~-----~~~~~~~l~~~~~----~~~~~DfiS~H~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 273 (486)
T PF01229_consen 206 ---WAY-----DEWCEDFLEFCKG----NNCPLDFISFHSYGTDSAEDINENMYERIEDSRRLFPELKETRPIINDEADP 273 (486)
T ss_dssp ---TT------THHHHHHHHHHHH----CT---SEEEEEEE-BESESE-SS-EEEEB--HHHHHHHHHHHHHHHHTSSST
T ss_pred ---ccH-----HHHHHHHHHHHhc----CCCCCCEEEEEecccccccccchhHHhhhhhHHHHHHHHHHHHHHHhhccCC
Confidence 111 1112233444555 6787 99999533321 1 011222222 22332 2
Q ss_pred CCCEEEeeeccCCCc--------hHHHHHHH-HHHHHHcCCCeeEEEEEceecC------CC---CCccccccCCCCcch
Q 042396 396 GLPIWLTEVDVQSSP--------NQAQYLEQ-ILREAHAHPKVQGIVVWAAWKP------SG---CYRMCLTDNNFKNLA 457 (472)
Q Consensus 396 g~pi~iTE~dv~~~~--------~qA~~~~~-~~~~~~s~p~v~gi~~Wg~w~~------~~---~~~~~L~d~d~~pKP 457 (472)
++|+++||...+..+ .+|.++-+ ++... .-.+.++..|.+-|- .. ...+||+..++-+||
T Consensus 274 ~~~~~~tE~n~~~~~~~~~~dt~~~aA~i~k~lL~~~--~~~l~~~sywt~sD~Fee~~~~~~pf~ggfGLlt~~gI~KP 351 (486)
T PF01229_consen 274 NLPLYITEWNASISPRNPQHDTCFKAAYIAKNLLSND--GAFLDSFSYWTFSDRFEENGTPRKPFHGGFGLLTKLGIPKP 351 (486)
T ss_dssp T--EEEEEEES-SSTT-GGGGSHHHHHHHHH-HHHHG--GGT-SEEEES-SBS---TTSS-SSSSSS-S-SEECCCEE-H
T ss_pred CCceeecccccccCCCcchhccccchhhHHHHHHHhh--hhhhhhhhccchhhhhhccCCCCCceecchhhhhccCCCch
Confidence 578999998876542 34555433 33221 124789999997541 11 125999999999999
Q ss_pred HHHHHHHH
Q 042396 458 TGDVVDKL 465 (472)
Q Consensus 458 a~~~~~~l 465 (472)
+|.++.-|
T Consensus 352 a~~A~~~L 359 (486)
T PF01229_consen 352 AYYAFQLL 359 (486)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998655
No 9
>TIGR03356 BGL beta-galactosidase.
Probab=99.26 E-value=7.8e-10 Score=115.47 Aligned_cols=250 Identities=16% Similarity=0.144 Sum_probs=158.9
Q ss_pred HccccceeeCCCCCCcccccC-CCCCCc---chHHHHHHHHHhCCcEEEEeEeecCCCCCCCcccCC---CCHHHHHHHH
Q 042396 203 TSRFKVTAFEDEMKWYSTEAS-PGREDY---SASDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVNS---LSPSDLSKAA 275 (472)
Q Consensus 203 ~~~fn~vt~en~~kW~~~ep~-~g~~~~---~~~D~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~~~---~~~~~~~~~~ 275 (472)
.-+||..++ .+.|..++|. +|.+|. +..|++++.|+++||++.- +| .|- .+|.|+.. +..+++.+.+
T Consensus 65 ~~G~~~~R~--si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~piv-tL-~Hf--d~P~~l~~~gGw~~~~~~~~f 138 (427)
T TIGR03356 65 ELGVDAYRF--SIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFV-TL-YHW--DLPQALEDRGGWLNRDTAEWF 138 (427)
T ss_pred HcCCCeEEc--ccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEE-ee-ccC--CccHHHHhcCCCCChHHHHHH
Confidence 459999999 8999999999 788884 5679999999999999863 33 232 37888752 3336677999
Q ss_pred HHHHHHHhhhcCCceEEEEeeccCccccc---cccc--cC----c-hH---------HHHHHHHHHhhCCCCeEEEeccC
Q 042396 276 DKRINSVTSRYKGQVIAWDVVNENLHFSF---FESK--LG----Q-NA---------SGVFFNRVHSLDGATTLFMNDYN 336 (472)
Q Consensus 276 ~~~i~~v~~ry~g~i~~WDVvNE~~~~~~---~~~~--~G----~-~~---------~~~af~~Ar~~dP~a~L~~Ndy~ 336 (472)
.+|.+.+++||+++|..|..+|||+.... .... .+ . .| .++|+++.|+..|++++-+.-..
T Consensus 139 ~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~~y~~G~~~P~~~~~~~~~~~~hnll~Aha~A~~~~~~~~~~~~IGi~~~~ 218 (427)
T TIGR03356 139 AEYAAVVAERLGDRVKHWITLNEPWCSAFLGYGLGVHAPGLRDLRAALQAAHHLLLAHGLAVQALRANGPGAQVGIVLNL 218 (427)
T ss_pred HHHHHHHHHHhCCcCCEEEEecCcceecccchhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 99999999999999999999999974211 1110 01 1 11 25788888999999887764222
Q ss_pred CcccCCCCCCCHHHHH------HH-----HHH---------HhcCcC------------CCCCcceeeeccccCC-----
Q 042396 337 TIEDSRDGKATPAMYL------QK-----LRQ---------ISEFPG------------NQNLRIGIGLESHFST----- 379 (472)
Q Consensus 337 ~~~~~~~~~~~~~~~~------~~-----~~~---------l~~~~~------------~~G~~DgIG~Q~H~~~----- 379 (472)
..-.|... ++.... +. ++- +++.++ -+|..|=||++-+...
T Consensus 219 ~~~~P~~~--~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~ 296 (427)
T TIGR03356 219 TPVYPASD--SPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLGDAPFVQDGDLETIAQPLDFLGINYYTRSVVAAD 296 (427)
T ss_pred CeeeeCCC--CHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhccCCCCCHHHHHHhcCCCCEEEEeccccceeccC
Confidence 11112110 111110 00 000 000000 0233388888643321
Q ss_pred --------------C--------CHHHHHHHHHHHH-hcCC-CEEEeeeccCC----------CchHHHHHHHHHHHHHc
Q 042396 380 --------------P--------NIPYMRASIDTLG-ATGL-PIWLTEVDVQS----------SPNQAQYLEQILREAHA 425 (472)
Q Consensus 380 --------------p--------~~~~~~~~l~~~a-~~g~-pi~iTE~dv~~----------~~~qA~~~~~~~~~~~s 425 (472)
+ .+..++..|..+. +.++ ||.|||-++.. .+.+.+|+++.+..+..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~rY~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~ 376 (427)
T TIGR03356 297 PGTGAGFVEVPEGVPKTAMGWEVYPEGLYDLLLRLKEDYPGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALAR 376 (427)
T ss_pred CCCCCCccccCCCCCcCCCCCeechHHHHHHHHHHHHhcCCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHH
Confidence 0 1346888998774 6787 79999998863 12567788777766542
Q ss_pred ----CCCeeEEEEEceecCC----C-CCccccccCCCC-----cchHHH
Q 042396 426 ----HPKVQGIVVWAAWKPS----G-CYRMCLTDNNFK-----NLATGD 460 (472)
Q Consensus 426 ----~p~v~gi~~Wg~w~~~----~-~~~~~L~d~d~~-----pKPa~~ 460 (472)
-=.|.|.+.|++-|.- | ...+||+--|+. ||+++.
T Consensus 377 Ai~dGv~v~GY~~Wsl~Dn~ew~~gy~~rfGl~~VD~~~~~R~~K~S~~ 425 (427)
T TIGR03356 377 AIEEGVDVRGYFVWSLLDNFEWAEGYSKRFGLVHVDYETQKRTPKDSAK 425 (427)
T ss_pred HHHCCCCEEEEEecccccccchhcccccccceEEECCCCCcccccceee
Confidence 2348999999986542 2 135888865544 666553
No 10
>PLN02998 beta-glucosidase
Probab=99.08 E-value=2.5e-08 Score=105.73 Aligned_cols=254 Identities=11% Similarity=0.121 Sum_probs=157.4
Q ss_pred ccccceeeCCCCCCcccccC-CCCCCcch---HHHHHHHHHhCCcEEEEeEeecCCCCCCCcccCC----CCHHHHHHHH
Q 042396 204 SRFKVTAFEDEMKWYSTEAS-PGREDYSA---SDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVNS----LSPSDLSKAA 275 (472)
Q Consensus 204 ~~fn~vt~en~~kW~~~ep~-~g~~~~~~---~D~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~~~----~~~~~~~~~~ 275 (472)
-++|.-++ .+.|..++|+ .|.+|-+. -+++++-+.++||+..- || +|- -+|.|+.. +...+..+.+
T Consensus 94 lG~~~YRf--SIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~V-TL-~H~--dlP~~L~~~yGGW~n~~~v~~F 167 (497)
T PLN02998 94 MGLEAYRF--SISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHV-TL-HHF--DLPQALEDEYGGWLSQEIVRDF 167 (497)
T ss_pred cCCCeEEe--eccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEE-Ee-cCC--CCCHHHHHhhCCcCCchHHHHH
Confidence 37899888 8999999996 56566553 47899999999999863 33 332 37988853 2345678999
Q ss_pred HHHHHHHhhhcCCceEEEEeeccCcccc-------cccccc-----------Cc----hH---------HHHHHHHHHhh
Q 042396 276 DKRINSVTSRYKGQVIAWDVVNENLHFS-------FFESKL-----------GQ----NA---------SGVFFNRVHSL 324 (472)
Q Consensus 276 ~~~i~~v~~ry~g~i~~WDVvNE~~~~~-------~~~~~~-----------G~----~~---------~~~af~~Ar~~ 324 (472)
.+|.+.+++||++||..|=.+|||+... .+.... |. -| -+.|+++.|+.
T Consensus 168 ~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~ 247 (497)
T PLN02998 168 TAYADTCFKEFGDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQ 247 (497)
T ss_pred HHHHHHHHHHhcCcCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999997421 110000 00 11 14667777775
Q ss_pred ---CCCCeEE--EeccCCcccCCCCCCCHHHHH--------------HH----------HHHHhcCc---------CCCC
Q 042396 325 ---DGATTLF--MNDYNTIEDSRDGKATPAMYL--------------QK----------LRQISEFP---------GNQN 366 (472)
Q Consensus 325 ---dP~a~L~--~Ndy~~~~~~~~~~~~~~~~~--------------~~----------~~~l~~~~---------~~~G 366 (472)
.|+.++- +|.. .. .|... ++.+-. +- .+.+...+ .-+|
T Consensus 248 ~~~~~~g~IGi~~~~~-~~-~P~~~--~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~ 323 (497)
T PLN02998 248 YKYKQHGSVGISVYTY-GA-VPLTN--SVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKG 323 (497)
T ss_pred hccCCCCcEEEEEeCC-ee-ecCCC--CHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcC
Confidence 5665544 3321 11 12110 111000 00 00010000 0023
Q ss_pred CcceeeeccccCC-------------------------------------CCHHHHHHHHHHHH-hcCC-CEEEeeeccC
Q 042396 367 LRIGIGLESHFST-------------------------------------PNIPYMRASIDTLG-ATGL-PIWLTEVDVQ 407 (472)
Q Consensus 367 ~~DgIG~Q~H~~~-------------------------------------p~~~~~~~~l~~~a-~~g~-pi~iTE~dv~ 407 (472)
..|=||++-+... -.+..|+..|..+. ..++ ||.|||-++.
T Consensus 324 ~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~ 403 (497)
T PLN02998 324 AFDFVGVINYMALYVKDNSSSLKPNLQDFNTDIAVEMTLVGNTSIENEYANTPWSLQQILLYVKETYGNPPVYILENGQM 403 (497)
T ss_pred CCCEEEEchhcCcccccCCCcCCCCccccccccccccccCCCcCCCCCCEEChHHHHHHHHHHHHHcCCCCEEEeCCCCc
Confidence 2377776421110 01346888888774 6787 6999999986
Q ss_pred CC-------chHHHHHHHHHHHHHc----CCCeeEEEEEceecCC----CC-CccccccCCCC-------cchHHHHHHH
Q 042396 408 SS-------PNQAQYLEQILREAHA----HPKVQGIVVWAAWKPS----GC-YRMCLTDNNFK-------NLATGDVVDK 464 (472)
Q Consensus 408 ~~-------~~qA~~~~~~~~~~~s----~p~v~gi~~Wg~w~~~----~~-~~~~L~d~d~~-------pKPa~~~~~~ 464 (472)
.. +.+.+|+++.|..+.. -=.|.|.+.|++-|.- |. ..+||+--|+. ||+++..+++
T Consensus 404 ~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLv~VD~~~~~~~R~pK~S~~wy~~ 483 (497)
T PLN02998 404 TPHSSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDVFELFGGYERSFGLLYVDFKDPSLKRSPKLSAHWYSS 483 (497)
T ss_pred cCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHHH
Confidence 42 2456777776665442 2358999999986642 21 35888855543 8999999999
Q ss_pred HHH
Q 042396 465 LLH 467 (472)
Q Consensus 465 li~ 467 (472)
+|+
T Consensus 484 ii~ 486 (497)
T PLN02998 484 FLK 486 (497)
T ss_pred HHh
Confidence 996
No 11
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=99.07 E-value=1.8e-09 Score=113.95 Aligned_cols=255 Identities=14% Similarity=0.159 Sum_probs=156.7
Q ss_pred ccccceeeCCCCCCcccccC--CCCCCcch---HHHHHHHHHhCCcEEEEeEeecCCCCCCCcccCC---CCHHHHHHHH
Q 042396 204 SRFKVTAFEDEMKWYSTEAS--PGREDYSA---SDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVNS---LSPSDLSKAA 275 (472)
Q Consensus 204 ~~fn~vt~en~~kW~~~ep~--~g~~~~~~---~D~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~~~---~~~~~~~~~~ 275 (472)
-++|+-++ .+.|..++|. +|.+|-+. -+++++-++++||++.- || +|- .+|.|+.. +..++..+.+
T Consensus 70 lg~~~yRf--si~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~v-tL-~H~--~~P~~l~~~ggw~~~~~~~~F 143 (455)
T PF00232_consen 70 LGVNAYRF--SISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIV-TL-YHF--DLPLWLEDYGGWLNRETVDWF 143 (455)
T ss_dssp HT-SEEEE--E--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEE-EE-ESS----BHHHHHHTGGGSTHHHHHH
T ss_pred hccceeee--ecchhheeecccccccCHhHhhhhHHHHHHHHhhccceee-ee-eec--ccccceeecccccCHHHHHHH
Confidence 48999998 8999999999 69998554 58899999999999874 33 332 38999853 2335678999
Q ss_pred HHHHHHHhhhcCCceEEEEeeccCcccc---ccccc--cC----ch-H---------HHHHHHHHHhhCCCCeEEEe-cc
Q 042396 276 DKRINSVTSRYKGQVIAWDVVNENLHFS---FFESK--LG----QN-A---------SGVFFNRVHSLDGATTLFMN-DY 335 (472)
Q Consensus 276 ~~~i~~v~~ry~g~i~~WDVvNE~~~~~---~~~~~--~G----~~-~---------~~~af~~Ar~~dP~a~L~~N-dy 335 (472)
.+|++.+++||+++|..|=.+|||+... +.... .| .. | .+.|+++.|+..|++++-+. .+
T Consensus 144 ~~Ya~~~~~~~gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~~~IGi~~~~ 223 (455)
T PF00232_consen 144 ARYAEFVFERFGDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPDGKIGIALNF 223 (455)
T ss_dssp HHHHHHHHHHHTTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCTSEEEEEEEE
T ss_pred HHHHHHHHHHhCCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccceEEeccccc
Confidence 9999999999999999999999996421 11100 11 01 1 25788999999999998652 22
Q ss_pred CCcccCCCCCCCHHHH-------HHH-----------------H-HHHhcC------c-----CCCCCcceeeeccccCC
Q 042396 336 NTIEDSRDGKATPAMY-------LQK-----------------L-RQISEF------P-----GNQNLRIGIGLESHFST 379 (472)
Q Consensus 336 ~~~~~~~~~~~~~~~~-------~~~-----------------~-~~l~~~------~-----~~~G~~DgIG~Q~H~~~ 379 (472)
.. -.|.+. ++..- .+. + ..+... . .-+|..|=||+.-+...
T Consensus 224 ~~-~~P~~~--~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~ 300 (455)
T PF00232_consen 224 SP-FYPLSP--SPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSR 300 (455)
T ss_dssp EE-EEESSS--SHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEE
T ss_pred cc-cCCCCc--cchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccce
Confidence 21 112111 11110 000 0 111110 0 00344488888533321
Q ss_pred -----C-------------------------------CHHHHHHHHHHHH-hcC-CCEEEeeeccCCCc----------h
Q 042396 380 -----P-------------------------------NIPYMRASIDTLG-ATG-LPIWLTEVDVQSSP----------N 411 (472)
Q Consensus 380 -----p-------------------------------~~~~~~~~l~~~a-~~g-~pi~iTE~dv~~~~----------~ 411 (472)
+ .+..|+..|..+. ..+ +||.|||-++.... .
T Consensus 301 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~l~~~Y~~~pI~ITENG~~~~~~~~~~~v~D~~ 380 (455)
T PF00232_consen 301 YVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYPEGLRDVLRYLKDRYGNPPIYITENGIGDPDEVDDGKVDDDY 380 (455)
T ss_dssp EEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBETHHHHHHHHHHHHHHTSSEEEEEEE---EETTCTTSHBSHHH
T ss_pred eeccCccccccccccCCccccccccccccccccCcccccchHhhhhhhhccccCCCcEEEecccccccccccccCcCcHH
Confidence 1 0357899999884 567 99999999986541 4
Q ss_pred HHHHHHHHHHHHH----cCCCeeEEEEEceecCC----C-CCccccccCC------CCcchHHHHHHHHHH
Q 042396 412 QAQYLEQILREAH----AHPKVQGIVVWAAWKPS----G-CYRMCLTDNN------FKNLATGDVVDKLLH 467 (472)
Q Consensus 412 qA~~~~~~~~~~~----s~p~v~gi~~Wg~w~~~----~-~~~~~L~d~d------~~pKPa~~~~~~li~ 467 (472)
+.+|+++.|..+. .--.|.|.+.|.+-|.- | ...+||+.-| -+||+++..++++|+
T Consensus 381 Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~Ew~~Gy~~rfGl~~VD~~~~~~R~pK~S~~~y~~~i~ 451 (455)
T PF00232_consen 381 RIDYLQDHLNQVLKAIEDGVNVRGYFAWSLLDNFEWAEGYKKRFGLVYVDFFDTLKRTPKKSAYWYKDFIR 451 (455)
T ss_dssp HHHHHHHHHHHHHHHHHTT-EEEEEEEETSB---BGGGGGGSE--SEEEETTTTTEEEEBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCCeeeEeeeccccccccccCccCccCceEEcCCCCcCeeeccHHHHHHHHHH
Confidence 5566666555443 34568999999986643 2 1368998777 679999999999996
No 12
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.06 E-value=1.8e-08 Score=96.53 Aligned_cols=249 Identities=18% Similarity=0.254 Sum_probs=178.6
Q ss_pred HHHH-ccccceeeCCCCCCcccccC------CCCCCcchHHHHHHHHHhCCcEEE--EeEe-ecCCCC-C-CC-cccCCC
Q 042396 200 NWFT-SRFKVTAFEDEMKWYSTEAS------PGREDYSASDAMLQFAKNHNIAVR--GHNI-FWDDPQ-Y-QP-GWVNSL 266 (472)
Q Consensus 200 ~~~~-~~fn~vt~en~~kW~~~ep~------~g~~~~~~~D~~v~~a~~~gi~vr--GH~l-vW~~~~-~-~P-~W~~~~ 266 (472)
++++ .+.|.|+++ -|..=-.+ -|.-|...+-+|...|+.+||+|. .|.- +|..+. | .| .|. .+
T Consensus 70 ~iLK~~GvNyvRlR---vwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~-~l 145 (403)
T COG3867 70 QILKNHGVNYVRLR---VWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWE-NL 145 (403)
T ss_pred HHHHHcCcCeEEEE---EecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhh-hc
Confidence 4444 579999874 23221111 134466677788899999999986 4543 455442 2 33 354 47
Q ss_pred CHHHHHHHHHHHHHHHhhhcCC---ceEEEEeeccCccccccccccCc------hHHHHHHHHHHhhCCCCeEEEeccCC
Q 042396 267 SPSDLSKAADKRINSVTSRYKG---QVIAWDVVNENLHFSFFESKLGQ------NASGVFFNRVHSLDGATTLFMNDYNT 337 (472)
Q Consensus 267 ~~~~~~~~~~~~i~~v~~ry~g---~i~~WDVvNE~~~~~~~~~~~G~------~~~~~af~~Ar~~dP~a~L~~Ndy~~ 337 (472)
+.+.++.++.+|.+.+++..+. .+..-.|-||....-.|..--|. ..+.++++++|+.+|+.++.+.--+
T Consensus 146 ~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~p~ikv~lHla~- 224 (403)
T COG3867 146 NFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSPTIKVALHLAE- 224 (403)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcCCCceEEEEecC-
Confidence 8899999999999999998874 46666999999765555532232 3467889999999999999987433
Q ss_pred cccCCCCCCCHHHHHHHHHHHhcCcCCCCCc-ceeeeccccCC-CCHHHHHHHHHHHH-hcCCCEEEeeeccCC------
Q 042396 338 IEDSRDGKATPAMYLQKLRQISEFPGNQNLR-IGIGLESHFST-PNIPYMRASIDTLG-ATGLPIWLTEVDVQS------ 408 (472)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~-DgIG~Q~H~~~-p~~~~~~~~l~~~a-~~g~pi~iTE~dv~~------ 408 (472)
+. +...|....++|.. ++++ |.||+..+++= .++..+...|+..+ +.++.|.|-|....-
T Consensus 225 ---g~----~n~~y~~~fd~ltk----~nvdfDVig~SyYpyWhgtl~nL~~nl~dia~rY~K~VmV~Etay~yTlEdgD 293 (403)
T COG3867 225 ---GE----NNSLYRWIFDELTK----RNVDFDVIGSSYYPYWHGTLNNLTTNLNDIASRYHKDVMVVETAYTYTLEDGD 293 (403)
T ss_pred ---CC----CCchhhHHHHHHHH----cCCCceEEeeeccccccCcHHHHHhHHHHHHHHhcCeEEEEEecceeeeccCC
Confidence 22 12356666788888 9999 99999665543 67888888999887 579999999976621
Q ss_pred --------C------c----hHHHHHHHHHHHHHcCCCe--eEEEEEce-ecC-----------------CCC------C
Q 042396 409 --------S------P----NQAQYLEQILREAHAHPKV--QGIVVWAA-WKP-----------------SGC------Y 444 (472)
Q Consensus 409 --------~------~----~qA~~~~~~~~~~~s~p~v--~gi~~Wg~-w~~-----------------~~~------~ 444 (472)
. | -||.++++++....+.|.- .||..|.. |.| ..| .
T Consensus 294 g~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nvp~~~GlGvFYWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavd 373 (403)
T COG3867 294 GHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNVPKSNGLGVFYWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVD 373 (403)
T ss_pred CCCCcCCcccccCCCceEEechhhHHHHHHHHHHhCCCCCceEEEEecccceeccCCCccccchhhccCcccccCCCccc
Confidence 0 1 4899999999999988764 78999983 321 111 2
Q ss_pred ccccccCCCCcchHHHHHHH
Q 042396 445 RMCLTDNNFKNLATGDVVDK 464 (472)
Q Consensus 445 ~~~L~d~d~~pKPa~~~~~~ 464 (472)
+..|||-++.|-|+..++..
T Consensus 374 NqaLfdf~G~~LPSl~vFn~ 393 (403)
T COG3867 374 NQALFDFNGHPLPSLNVFNY 393 (403)
T ss_pred hhhhhhccCCcCcchhhhhh
Confidence 57899999999999998764
No 13
>PLN02814 beta-glucosidase
Probab=99.06 E-value=4.4e-08 Score=104.00 Aligned_cols=255 Identities=11% Similarity=0.142 Sum_probs=156.6
Q ss_pred ccccceeeCCCCCCcccccC-CCCCCcch---HHHHHHHHHhCCcEEEEeEeecCCCCCCCcccCC----CCHHHHHHHH
Q 042396 204 SRFKVTAFEDEMKWYSTEAS-PGREDYSA---SDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVNS----LSPSDLSKAA 275 (472)
Q Consensus 204 ~~fn~vt~en~~kW~~~ep~-~g~~~~~~---~D~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~~~----~~~~~~~~~~ 275 (472)
-++|+-++ .+.|..++|+ +|.+|-+. -+++++-|.+|||+..--..-|. +|.|+.. +...++.+.+
T Consensus 89 lG~~ayRf--SIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~d----lP~~L~~~yGGW~n~~~i~~F 162 (504)
T PLN02814 89 MGLESFRF--SISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYD----LPQSLEDEYGGWINRKIIEDF 162 (504)
T ss_pred cCCCEEEE--eccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCC----CCHHHHHhcCCcCChhHHHHH
Confidence 37899998 8999999996 56677654 47899999999999864322343 7988853 2346778999
Q ss_pred HHHHHHHhhhcCCceEEEEeeccCccccc--cc-cc-c-------------C---c-hH---------HHHHHHHHHhh-
Q 042396 276 DKRINSVTSRYKGQVIAWDVVNENLHFSF--FE-SK-L-------------G---Q-NA---------SGVFFNRVHSL- 324 (472)
Q Consensus 276 ~~~i~~v~~ry~g~i~~WDVvNE~~~~~~--~~-~~-~-------------G---~-~~---------~~~af~~Ar~~- 324 (472)
.+|.+.+++||+++|..|=..|||+.... +. .. . + . -| -+.|.++.|+.
T Consensus 163 ~~YA~~~f~~fgdrVk~WiT~NEP~~~~~~gy~~G~~pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~ 242 (504)
T PLN02814 163 TAFADVCFREFGEDVKLWTTINEATIFAIGSYGQGIRYGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKY 242 (504)
T ss_pred HHHHHHHHHHhCCcCCEEEeccccchhhhcccccCcCCCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999963210 00 00 0 0 0 11 14667777764
Q ss_pred --CCCCeEEEe-ccCCcccCCCCCCCHHH---------HH-----HH----------HHHHhcCc---------CCCCCc
Q 042396 325 --DGATTLFMN-DYNTIEDSRDGKATPAM---------YL-----QK----------LRQISEFP---------GNQNLR 368 (472)
Q Consensus 325 --dP~a~L~~N-dy~~~~~~~~~~~~~~~---------~~-----~~----------~~~l~~~~---------~~~G~~ 368 (472)
.|+.++-+- .+... .|.. .++.+ +. +- .+.+...+ .-+|-.
T Consensus 243 ~~~~~g~IGi~~~~~~~-~P~~--~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~ 319 (504)
T PLN02814 243 KSKQRGSIGLSIFAFGL-SPYT--NSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSS 319 (504)
T ss_pred ccCCCCeEEEEEeCcee-ecCC--CCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCC
Confidence 677655542 12211 1110 01110 00 00 00010000 001222
Q ss_pred ceeeeccccC------------------------------C--------CCHHHHHHHHHHHH-hcCC-CEEEeeeccCC
Q 042396 369 IGIGLESHFS------------------------------T--------PNIPYMRASIDTLG-ATGL-PIWLTEVDVQS 408 (472)
Q Consensus 369 DgIG~Q~H~~------------------------------~--------p~~~~~~~~l~~~a-~~g~-pi~iTE~dv~~ 408 (472)
|=||++-+.. . -.+..++..|..+. ..+. ||.|||-++..
T Consensus 320 DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gWei~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~ 399 (504)
T PLN02814 320 DFVGIIHYTTFYVTNRPAPSIFPSMNEGFFTDMGAYIISAGNSSFFEFDATPWGLEGILEHIKQSYNNPPIYILENGMPM 399 (504)
T ss_pred CEEEEcccccceeccCCCCCcccccCCCcccccccccCCCCCcCCCCCeECcHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 5555432110 0 02456888888875 5666 79999999862
Q ss_pred C-------chHHHHHHHHHHHHHc----CCCeeEEEEEceecCC----CC-CccccccCCC-------CcchHHHHHHHH
Q 042396 409 S-------PNQAQYLEQILREAHA----HPKVQGIVVWAAWKPS----GC-YRMCLTDNNF-------KNLATGDVVDKL 465 (472)
Q Consensus 409 ~-------~~qA~~~~~~~~~~~s----~p~v~gi~~Wg~w~~~----~~-~~~~L~d~d~-------~pKPa~~~~~~l 465 (472)
. +.+.+|+++.|..+.. -=.|.|.+.|++-|.- |. ..+||+--|+ .||+++..++++
T Consensus 400 ~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~~RfGLvyVD~~~~~~~R~pK~S~~wy~~~ 479 (504)
T PLN02814 400 KHDSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDLYELLGGYTTSFGMYYVNFSDPGRKRSPKLSASWYTGF 479 (504)
T ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceeeecHHHHHHHH
Confidence 2 2566777777765432 2358999999986642 21 3588885443 389999999999
Q ss_pred HH
Q 042396 466 LH 467 (472)
Q Consensus 466 i~ 467 (472)
|+
T Consensus 480 i~ 481 (504)
T PLN02814 480 LN 481 (504)
T ss_pred Hh
Confidence 85
No 14
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=98.98 E-value=1.4e-07 Score=99.70 Aligned_cols=252 Identities=14% Similarity=0.151 Sum_probs=160.1
Q ss_pred ccccceeeCCCCCCcccccC--CCCCCcch---HHHHHHHHHhCCcEEEEeEeecCCCCCCCcccCC----CCHHHHHHH
Q 042396 204 SRFKVTAFEDEMKWYSTEAS--PGREDYSA---SDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVNS----LSPSDLSKA 274 (472)
Q Consensus 204 ~~fn~vt~en~~kW~~~ep~--~g~~~~~~---~D~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~~~----~~~~~~~~~ 274 (472)
-++|+-++ .+.|..++|. .|.+|-+. -+++++-|.++||+..- || +|- -+|.|+.. +...++.+.
T Consensus 85 lG~~aYRf--SIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~V-TL-~H~--dlP~~L~~~~GGW~n~~~v~~ 158 (478)
T PRK09593 85 MGFKTYRM--SIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLV-TI-THF--DCPMHLIEEYGGWRNRKMVGF 158 (478)
T ss_pred cCCCEEEE--ecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE-Ee-ccc--CCCHHHHhhcCCCCChHHHHH
Confidence 48999999 8999999997 45555543 47899999999998863 33 332 38999852 334567889
Q ss_pred HHHHHHHHhhhcCCceEEEEeeccCcccc---cc-cc---ccCc-----hH---------HHHHHHHHHhhCCCCeEEEe
Q 042396 275 ADKRINSVTSRYKGQVIAWDVVNENLHFS---FF-ES---KLGQ-----NA---------SGVFFNRVHSLDGATTLFMN 333 (472)
Q Consensus 275 ~~~~i~~v~~ry~g~i~~WDVvNE~~~~~---~~-~~---~~G~-----~~---------~~~af~~Ar~~dP~a~L~~N 333 (472)
+.+|.+.+++||+++|..|=-+|||+... .+ .. ..|. -| -+.|+++.|+..|+.++-+.
T Consensus 159 F~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~~~~~~~a~h~~llAHa~A~~~~~~~~~~g~VGi~ 238 (478)
T PRK09593 159 YERLCRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENKEQVKYQAAHHELVASAIATKIAHEVDPENKVGCM 238 (478)
T ss_pred HHHHHHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 99999999999999999999999996421 11 00 1121 11 14678888888888776543
Q ss_pred ccCCcccCCCCCCCHHH--------------------------HHHHHHH-------------HhcCcCCCCCcceeeec
Q 042396 334 DYNTIEDSRDGKATPAM--------------------------YLQKLRQ-------------ISEFPGNQNLRIGIGLE 374 (472)
Q Consensus 334 dy~~~~~~~~~~~~~~~--------------------------~~~~~~~-------------l~~~~~~~G~~DgIG~Q 374 (472)
-....-.|... ++.+ +.+.+.. ++. +|..|=||+.
T Consensus 239 ~~~~~~~P~~~--~~~D~~aa~~~~~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik----~g~~DFlGiN 312 (478)
T PRK09593 239 LAAGQYYPNTC--HPEDVWAAMKEDRENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLK----ENTVDFISFS 312 (478)
T ss_pred EeCCeeEeCCC--CHHHHHHHHHHHHHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHh----cCCCCEEEEe
Confidence 21111112110 1110 0111110 010 2333767764
Q ss_pred cccCC----------------------C-----------CHHHHHHHHHHH-HhcCCCEEEeeeccCCC-----------
Q 042396 375 SHFST----------------------P-----------NIPYMRASIDTL-GATGLPIWLTEVDVQSS----------- 409 (472)
Q Consensus 375 ~H~~~----------------------p-----------~~~~~~~~l~~~-a~~g~pi~iTE~dv~~~----------- 409 (472)
-+... | .+..|+..|..+ .+.++||.|||-++...
T Consensus 313 yYt~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D 392 (478)
T PRK09593 313 YYSSRVASGDPKVNEKTAGNIFASLKNPYLKASEWGWQIDPLGLRITLNTIWDRYQKPMFIVENGLGAVDKPDENGYVED 392 (478)
T ss_pred cccCcccccCCCCCCCCCCCccccccCCCcccCCCCCEECHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCccCC
Confidence 21100 1 134688888877 46789999999988632
Q ss_pred chHHHHHHHHHHHHHc-----CCCeeEEEEEceecC----CC-C-CccccccCCCC----------cchHHHHHHHHHH
Q 042396 410 PNQAQYLEQILREAHA-----HPKVQGIVVWAAWKP----SG-C-YRMCLTDNNFK----------NLATGDVVDKLLH 467 (472)
Q Consensus 410 ~~qA~~~~~~~~~~~s-----~p~v~gi~~Wg~w~~----~~-~-~~~~L~d~d~~----------pKPa~~~~~~li~ 467 (472)
+.+-+|+++.|..+.. --.|.|.+.|++-|. .| . ..+||+--|+. ||+++..++++|+
T Consensus 393 ~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~G~y~~RfGl~~VD~~~~~~~~~~R~pK~S~~wy~~ii~ 471 (478)
T PRK09593 393 DYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCIDLVSAGTGEMKKRYGFIYVDRDNEGKGTLKRSKKKSFDWYKKVIA 471 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHhhcccCCCccCeeceEEECCCCCCCcccceecccHHHHHHHHHH
Confidence 1355677776665432 234899999998553 12 2 35888855543 8999999999995
No 15
>PLN02849 beta-glucosidase
Probab=98.97 E-value=1.5e-07 Score=99.89 Aligned_cols=262 Identities=13% Similarity=0.162 Sum_probs=160.4
Q ss_pred HHHHHH---H-ccccceeeCCCCCCcccccCC-CCCCcch---HHHHHHHHHhCCcEEEEeEeecCCCCCCCcccCC---
Q 042396 197 AYQNWF---T-SRFKVTAFEDEMKWYSTEASP-GREDYSA---SDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVNS--- 265 (472)
Q Consensus 197 ~~~~~~---~-~~fn~vt~en~~kW~~~ep~~-g~~~~~~---~D~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~~~--- 265 (472)
+|++-+ + -++|+-++ .+.|..++|.. |.+|-+. -+++++-|.++||+..--..-|. +|.|+..
T Consensus 80 rY~eDI~Lm~~lG~~aYRf--SIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~d----lP~~L~~~yG 153 (503)
T PLN02849 80 KYKEDVKLMVETGLDAFRF--SISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYD----HPQYLEDDYG 153 (503)
T ss_pred hHHHHHHHHHHcCCCeEEE--eccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCC----CcHHHHHhcC
Confidence 455543 3 38999988 89999999963 5566543 47899999999999864322343 7888854
Q ss_pred -CCHHHHHHHHHHHHHHHhhhcCCceEEEEeeccCcccc-------cccc-c-c--------Cc----hH---------H
Q 042396 266 -LSPSDLSKAADKRINSVTSRYKGQVIAWDVVNENLHFS-------FFES-K-L--------GQ----NA---------S 314 (472)
Q Consensus 266 -~~~~~~~~~~~~~i~~v~~ry~g~i~~WDVvNE~~~~~-------~~~~-~-~--------G~----~~---------~ 314 (472)
+...++.+.+.+|.+.+++||+++|..|=-.|||+... .+.. . . +. -| -
T Consensus 154 GW~nr~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAH 233 (503)
T PLN02849 154 GWINRRIIKDFTAYADVCFREFGNHVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAH 233 (503)
T ss_pred CcCCchHHHHHHHHHHHHHHHhcCcCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHH
Confidence 23456789999999999999999999999999996321 1110 0 0 10 11 1
Q ss_pred HHHHHHHHhh---CCCCeEEE-eccCCcccCCCCCCCHHHHH--------------H----------HHHHHhcCc----
Q 042396 315 GVFFNRVHSL---DGATTLFM-NDYNTIEDSRDGKATPAMYL--------------Q----------KLRQISEFP---- 362 (472)
Q Consensus 315 ~~af~~Ar~~---dP~a~L~~-Ndy~~~~~~~~~~~~~~~~~--------------~----------~~~~l~~~~---- 362 (472)
+.|+++.|+. .|+.++-+ +..... .|... .+.+.. + +.+.+...+
T Consensus 234 a~A~~~~~~~~~~~~~~~IGi~~~~~~~-~P~~~--~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~ 310 (503)
T PLN02849 234 ASVSRLYKQKYKDMQGGSIGFSLFALGF-TPSTS--SKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFS 310 (503)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEEECcee-ecCCC--CHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCC
Confidence 4667777765 37766654 212111 12110 111100 0 001010000
Q ss_pred -----CCCCCcceeeeccccC-----------------------C--C---------CHHHHHHHHHHHH-hcCC-CEEE
Q 042396 363 -----GNQNLRIGIGLESHFS-----------------------T--P---------NIPYMRASIDTLG-ATGL-PIWL 401 (472)
Q Consensus 363 -----~~~G~~DgIG~Q~H~~-----------------------~--p---------~~~~~~~~l~~~a-~~g~-pi~i 401 (472)
.-+|..|=||++-+.. . + .+..|+..|..+. ..++ ||.|
T Consensus 311 ~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~rY~~pPi~I 390 (503)
T PLN02849 311 KEESEQVKGSSDFIGVIHYLAASVTNIKIKPSLSGNPDFYSDMGVSLGKFSAFEYAVAPWAMESVLEYIKQSYGNPPVYI 390 (503)
T ss_pred HHHHHHhcCCCCEEEEeccchhhcccCCCCCCCCCCCccccccCCCCCccCCCCCeEChHHHHHHHHHHHHhcCCCCEEE
Confidence 0022226666541110 0 0 1346888888774 6787 7999
Q ss_pred eeeccCCC---------chHHHHHHHHHHHHHc----CCCeeEEEEEceecCC----C-CCccccccCCCC-------cc
Q 042396 402 TEVDVQSS---------PNQAQYLEQILREAHA----HPKVQGIVVWAAWKPS----G-CYRMCLTDNNFK-------NL 456 (472)
Q Consensus 402 TE~dv~~~---------~~qA~~~~~~~~~~~s----~p~v~gi~~Wg~w~~~----~-~~~~~L~d~d~~-------pK 456 (472)
||-++... ..+.+|+++.|..+.. --.|.|.+.|++-|.- | ...+||+--|+. ||
T Consensus 391 TENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLi~VD~~~~~~~R~pK 470 (503)
T PLN02849 391 LENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDLYELLKGYEFSFGLYSVNFSDPHRKRSPK 470 (503)
T ss_pred eCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecc
Confidence 99998732 2466777777766542 2358999999986642 2 135888854443 89
Q ss_pred hHHHHHHHHHH
Q 042396 457 ATGDVVDKLLH 467 (472)
Q Consensus 457 Pa~~~~~~li~ 467 (472)
+++..++++|+
T Consensus 471 ~S~~wy~~ii~ 481 (503)
T PLN02849 471 LSAHWYSAFLK 481 (503)
T ss_pred cHHHHHHHHHH
Confidence 99999999985
No 16
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=98.96 E-value=2.3e-07 Score=98.13 Aligned_cols=254 Identities=12% Similarity=0.104 Sum_probs=158.1
Q ss_pred ccccceeeCCCCCCcccccC-CCCCCcch---HHHHHHHHHhCCcEEEEeEeecCCCCCCCcccCC---CCHHHHHHHHH
Q 042396 204 SRFKVTAFEDEMKWYSTEAS-PGREDYSA---SDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVNS---LSPSDLSKAAD 276 (472)
Q Consensus 204 ~~fn~vt~en~~kW~~~ep~-~g~~~~~~---~D~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~~~---~~~~~~~~~~~ 276 (472)
-++|+-++ .+.|..++|. .|.+|-+. -+++++-|+++||+..- || +|- -+|.|+.. +...++.+.+.
T Consensus 66 lG~~~yRf--SIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~V-TL-~H~--dlP~~L~~~GGW~n~~~v~~F~ 139 (469)
T PRK13511 66 FGVNGIRI--SIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFV-TL-HHF--DTPEALHSNGDWLNRENIDHFV 139 (469)
T ss_pred hCCCEEEe--eccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEE-Ee-cCC--CCcHHHHHcCCCCCHHHHHHHH
Confidence 48999998 8999999997 45555543 57899999999999863 33 332 38999853 33457789999
Q ss_pred HHHHHHhhhcCCceEEEEeeccCcccc---cccc--ccC---c--h-H---------HHHHHHHHHhhCCCCeEEEeccC
Q 042396 277 KRINSVTSRYKGQVIAWDVVNENLHFS---FFES--KLG---Q--N-A---------SGVFFNRVHSLDGATTLFMNDYN 336 (472)
Q Consensus 277 ~~i~~v~~ry~g~i~~WDVvNE~~~~~---~~~~--~~G---~--~-~---------~~~af~~Ar~~dP~a~L~~Ndy~ 336 (472)
+|.+.+++||++ |..|=-+|||+... +... ..| . . | -++|+++.|+..|+.++-+.-..
T Consensus 140 ~YA~~~~~~fgd-Vk~W~T~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~g~IGi~~~~ 218 (469)
T PRK13511 140 RYAEFCFEEFPE-VKYWTTFNEIGPIGDGQYLVGKFPPGIKYDLAKVFQSHHNMMVAHARAVKLFKDKGYKGEIGVVHAL 218 (469)
T ss_pred HHHHHHHHHhCC-CCEEEEccchhhhhhcchhhcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 999999999999 99999999996421 1100 111 1 1 1 14677888888887665542111
Q ss_pred CcccCCCCCCCHHH---------------------------HHHHHH-----------------HHhcCcCCCCCcceee
Q 042396 337 TIEDSRDGKATPAM---------------------------YLQKLR-----------------QISEFPGNQNLRIGIG 372 (472)
Q Consensus 337 ~~~~~~~~~~~~~~---------------------------~~~~~~-----------------~l~~~~~~~G~~DgIG 372 (472)
..-.|... ..+.+ +.+.+. +++. +.+|..|=||
T Consensus 219 ~~~~P~~~-~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik--~~~~~~DFiG 295 (469)
T PRK13511 219 PTKYPIDP-DNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILK--AAKDLNDFLG 295 (469)
T ss_pred ceEeeCCC-CCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHh--cCCCCCCEEE
Confidence 11111110 00100 011110 0010 0012226666
Q ss_pred eccccCC--------------------------------------C--------CHHHHHHHHHHHH-hcCC--CEEEee
Q 042396 373 LESHFST--------------------------------------P--------NIPYMRASIDTLG-ATGL--PIWLTE 403 (472)
Q Consensus 373 ~Q~H~~~--------------------------------------p--------~~~~~~~~l~~~a-~~g~--pi~iTE 403 (472)
++-+... | .+..|+..|..+. ..+. ||.|||
T Consensus 296 iNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~~~pi~ITE 375 (469)
T PRK13511 296 INYYMSDWMRAYDGETEIIHNGTGEKGSSKYQLKGVGERVKPPDVPTTDWDWIIYPQGLYDQLMRIKKDYPNYKKIYITE 375 (469)
T ss_pred echhhcceeecCCCccccccCCCCccccccccccCccccccCCCCCcCCCCCeECcHHHHHHHHHHHHHcCCCCCEEEec
Confidence 6432110 0 1245788888774 5665 799999
Q ss_pred eccCCC-----------chHHHHHHHHHHHHHc----CCCeeEEEEEceecCC----CC-CccccccCCC-----CcchH
Q 042396 404 VDVQSS-----------PNQAQYLEQILREAHA----HPKVQGIVVWAAWKPS----GC-YRMCLTDNNF-----KNLAT 458 (472)
Q Consensus 404 ~dv~~~-----------~~qA~~~~~~~~~~~s----~p~v~gi~~Wg~w~~~----~~-~~~~L~d~d~-----~pKPa 458 (472)
-++... ..+.+|+++.|..+.. --.|.|.+.|++-|.- |. ..+||+--|+ .||++
T Consensus 376 NG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~DnfEW~~Gy~~RfGl~~VD~~~~~R~pK~S 455 (469)
T PRK13511 376 NGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFETQERYPKKS 455 (469)
T ss_pred CCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccchhcCccCccceEEECCCcCccccccH
Confidence 998621 2456677777665542 2358999999986642 21 2588886554 38999
Q ss_pred HHHHHHHHH
Q 042396 459 GDVVDKLLH 467 (472)
Q Consensus 459 ~~~~~~li~ 467 (472)
+..++++|+
T Consensus 456 ~~wy~~~i~ 464 (469)
T PRK13511 456 AYWYKKLAE 464 (469)
T ss_pred HHHHHHHHH
Confidence 999999986
No 17
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=98.94 E-value=2.2e-07 Score=98.11 Aligned_cols=256 Identities=14% Similarity=0.110 Sum_probs=159.7
Q ss_pred ccccceeeCCCCCCcccccC--CCCCCc---chHHHHHHHHHhCCcEEEEeEeecCCCCCCCcccCC----CCHHHHHHH
Q 042396 204 SRFKVTAFEDEMKWYSTEAS--PGREDY---SASDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVNS----LSPSDLSKA 274 (472)
Q Consensus 204 ~~fn~vt~en~~kW~~~ep~--~g~~~~---~~~D~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~~~----~~~~~~~~~ 274 (472)
-++|+.++ .+.|..++|. .+.+|- +.-|++++.|+++||++.- || .|- .+|.|+.. +...+..+.
T Consensus 83 lG~~~yR~--si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~V-tL-~H~--~~P~~l~~~~GGW~~~~~~~~ 156 (474)
T PRK09852 83 MGFKVFRT--SIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLV-TL-CHF--DVPMHLVTEYGSWRNRKMVEF 156 (474)
T ss_pred cCCCeEEe--eceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE-Ee-eCC--CCCHHHHHhcCCCCCHHHHHH
Confidence 48999999 8999999997 333443 3468899999999998853 33 232 38998752 334667899
Q ss_pred HHHHHHHHhhhcCCceEEEEeeccCccc---ccc-cc---ccCc-----hH---------HHHHHHHHHhhCCCCeEEEe
Q 042396 275 ADKRINSVTSRYKGQVIAWDVVNENLHF---SFF-ES---KLGQ-----NA---------SGVFFNRVHSLDGATTLFMN 333 (472)
Q Consensus 275 ~~~~i~~v~~ry~g~i~~WDVvNE~~~~---~~~-~~---~~G~-----~~---------~~~af~~Ar~~dP~a~L~~N 333 (472)
+.+|.+.+++||+++|..|=.+|||+.. .+. .. ..|. -| -+.|+++.|+..|+.++-+.
T Consensus 157 F~~ya~~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~IGi~ 236 (474)
T PRK09852 157 FSRYARTCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQDQVKYQAAHHELVASALATKIAHEVNPQNQVGCM 236 (474)
T ss_pred HHHHHHHHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCchHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 9999999999999999999999999632 111 00 1111 12 15678888888888766543
Q ss_pred ccCCcccCCCCCCCHHHHH-------------H----------HHHHHhc------Cc-C----CCCCcceeeeccccC-
Q 042396 334 DYNTIEDSRDGKATPAMYL-------------Q----------KLRQISE------FP-G----NQNLRIGIGLESHFS- 378 (472)
Q Consensus 334 dy~~~~~~~~~~~~~~~~~-------------~----------~~~~l~~------~~-~----~~G~~DgIG~Q~H~~- 378 (472)
-....-.|... ++.+-. + +.+.+.+ +. + -+|..|=||+.-+..
T Consensus 237 ~~~~~~~P~~~--~~~d~~AA~~~~~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlGiNyYt~~ 314 (474)
T PRK09852 237 LAGGNFYPYSC--KPEDVWAALEKDRENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVSFSYYASR 314 (474)
T ss_pred EeCCeeeeCCC--CHHHHHHHHHHHHHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEEEccccCe
Confidence 22111112110 111100 0 0011111 00 0 012226566541110
Q ss_pred ---------------------CC-----------CHHHHHHHHHHH-HhcCCCEEEeeeccCCC-----------chHHH
Q 042396 379 ---------------------TP-----------NIPYMRASIDTL-GATGLPIWLTEVDVQSS-----------PNQAQ 414 (472)
Q Consensus 379 ---------------------~p-----------~~~~~~~~l~~~-a~~g~pi~iTE~dv~~~-----------~~qA~ 414 (472)
.| .+..|+..|..+ .+.++||.|||-++... ..+-+
T Consensus 315 ~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~ 394 (474)
T PRK09852 315 CASAEMNANNSSAANVVKSLRNPYLQVSDWGWGIDPLGLRITMNMMYDRYQKPLFLVENGLGAKDEIAANGEINDDYRIS 394 (474)
T ss_pred ecccCCCCCCCCcCCceecccCCCcccCCCCCeeChHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcCCCCccCCHHHHH
Confidence 01 245688888877 46899999999998732 13556
Q ss_pred HHHHHHHHHHc----CCCeeEEEEEceecC----CC--CCccccccCCCC----------cchHHHHHHHHHH
Q 042396 415 YLEQILREAHA----HPKVQGIVVWAAWKP----SG--CYRMCLTDNNFK----------NLATGDVVDKLLH 467 (472)
Q Consensus 415 ~~~~~~~~~~s----~p~v~gi~~Wg~w~~----~~--~~~~~L~d~d~~----------pKPa~~~~~~li~ 467 (472)
|+++.|..+.. --.|.|.+.|++-|. .| ...+||+--|+. ||+++..++++|+
T Consensus 395 Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGLv~VD~~~~~~~t~~R~pK~S~~wy~~ii~ 467 (474)
T PRK09852 395 YLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVYVDRDDAGNGTLTRTRKKSFWWYKKVIA 467 (474)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeecccccccccCCCccceeeeEEECCCCCCCcccceecccHHHHHHHHHH
Confidence 77776665532 235899999998654 23 235888855544 8999999999995
No 18
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.94 E-value=1.8e-07 Score=102.39 Aligned_cols=225 Identities=15% Similarity=0.140 Sum_probs=145.8
Q ss_pred ccccceeeCCCCCCcccccCCCCCCcchHHHHHHHHHhCCcEEEEeEeecC-----C------CCCCCcccCCCCHHHHH
Q 042396 204 SRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHNIAVRGHNIFWD-----D------PQYQPGWVNSLSPSDLS 272 (472)
Q Consensus 204 ~~fn~vt~en~~kW~~~ep~~g~~~~~~~D~~v~~a~~~gi~vrGH~lvW~-----~------~~~~P~W~~~~~~~~~~ 272 (472)
.+||+++. .-+ | ...++++.|.+.||.|--=+..|. . ....|.|-.....++.+
T Consensus 325 ~G~N~vR~--sh~-----p--------~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (604)
T PRK10150 325 IGANSFRT--SHY-----P--------YSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQ 389 (604)
T ss_pred CCCCEEEe--ccC-----C--------CCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHH
Confidence 48999987 111 1 246799999999997753332221 1 00112222111123567
Q ss_pred HHHHHHHHHHhhhcCC--ceEEEEeeccCccccccccccCchHHHHHHHHHHhhCCCCeEEEeccCCcccCCCCCCCHHH
Q 042396 273 KAADKRINSVTSRYKG--QVIAWDVVNENLHFSFFESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAM 350 (472)
Q Consensus 273 ~~~~~~i~~v~~ry~g--~i~~WDVvNE~~~~~~~~~~~G~~~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~ 350 (472)
+...+.+++++.|++. .|..|-+-||+.... .-..++++...+++|+.||+-.+-+-... ..... ...
T Consensus 390 ~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~~----~~~~~~~~~l~~~~k~~DptR~vt~~~~~--~~~~~----~~~ 459 (604)
T PRK10150 390 QAHLQAIRELIARDKNHPSVVMWSIANEPASRE----QGAREYFAPLAELTRKLDPTRPVTCVNVM--FATPD----TDT 459 (604)
T ss_pred HHHHHHHHHHHHhccCCceEEEEeeccCCCccc----hhHHHHHHHHHHHHHhhCCCCceEEEecc--cCCcc----ccc
Confidence 7888999999999987 799999999974211 11236788999999999998444432211 00000 000
Q ss_pred HHHHHHHHhcCcCCCCCcceeeeccccC----CCCHHH----HHHHHHHHH-hcCCCEEEeeeccCCC------------
Q 042396 351 YLQKLRQISEFPGNQNLRIGIGLESHFS----TPNIPY----MRASIDTLG-ATGLPIWLTEVDVQSS------------ 409 (472)
Q Consensus 351 ~~~~~~~l~~~~~~~G~~DgIG~Q~H~~----~p~~~~----~~~~l~~~a-~~g~pi~iTE~dv~~~------------ 409 (472)
+ ....|-+|+..+++ ..+... +...++++. ..++|+.|||++..+.
T Consensus 460 -------~------~~~~Dv~~~N~Y~~wy~~~~~~~~~~~~~~~~~~~~~~~~~kP~~isEyg~~~~~~~h~~~~~~~~ 526 (604)
T PRK10150 460 -------V------SDLVDVLCLNRYYGWYVDSGDLETAEKVLEKELLAWQEKLHKPIIITEYGADTLAGLHSMYDDMWS 526 (604)
T ss_pred -------c------cCcccEEEEcccceecCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEccCCccccccccCCCCCCC
Confidence 0 22349999854443 123322 334444443 3489999999985431
Q ss_pred -chHHHHHHHHHHHHHcCCCeeEEEEEceec----CCCC----CccccccCCCCcchHHHHHHHHH
Q 042396 410 -PNQAQYLEQILREAHAHPKVQGIVVWAAWK----PSGC----YRMCLTDNNFKNLATGDVVDKLL 466 (472)
Q Consensus 410 -~~qA~~~~~~~~~~~s~p~v~gi~~Wg~w~----~~~~----~~~~L~d~d~~pKPa~~~~~~li 466 (472)
+.|+.+++..+.++.++|.+.|-.+|.+.| .+.. ...||++.|.+|||++..++.+.
T Consensus 527 ee~q~~~~~~~~~~~~~~p~~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~~~dr~~k~~~~~~k~~~ 592 (604)
T PRK10150 527 EEYQCAFLDMYHRVFDRVPAVVGEQVWNFADFATSQGILRVGGNKKGIFTRDRQPKSAAFLLKKRW 592 (604)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEEEeeeccCCCCCCcccCCCcceeEcCCCCChHHHHHHHHHh
Confidence 279999999999999999999999999887 2111 25899999999999998777664
No 19
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=98.92 E-value=4.6e-07 Score=95.84 Aligned_cols=256 Identities=13% Similarity=0.108 Sum_probs=161.1
Q ss_pred HHHH-ccccceeeCCCCCCcccccC--CCCCCcc---hHHHHHHHHHhCCcEEEEeEeecCCCCCCCcccCC----CCHH
Q 042396 200 NWFT-SRFKVTAFEDEMKWYSTEAS--PGREDYS---ASDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVNS----LSPS 269 (472)
Q Consensus 200 ~~~~-~~fn~vt~en~~kW~~~ep~--~g~~~~~---~~D~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~~~----~~~~ 269 (472)
++++ -+||+-++ .+.|..++|. .|.+|-+ --+++++.|+++||++.- || +|- .+|.|+.. +...
T Consensus 76 ~Lm~elG~~~yRf--SIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~v-TL-~H~--dlP~~L~~~yGGW~n~ 149 (477)
T PRK15014 76 KLFAEMGFKCFRT--SIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVI-TL-SHF--EMPLHLVQQYGSWTNR 149 (477)
T ss_pred HHHHHcCCCEEEe--cccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE-Ee-eCC--CCCHHHHHhcCCCCCh
Confidence 3444 48999999 8999999997 3445544 458899999999999863 33 332 37988843 3345
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeeccCccc--------cccc-cc---cC----c-hH---------HHHHHHHHHh
Q 042396 270 DLSKAADKRINSVTSRYKGQVIAWDVVNENLHF--------SFFE-SK---LG----Q-NA---------SGVFFNRVHS 323 (472)
Q Consensus 270 ~~~~~~~~~i~~v~~ry~g~i~~WDVvNE~~~~--------~~~~-~~---~G----~-~~---------~~~af~~Ar~ 323 (472)
++.+.+.+|.+.+++||+++|..|=.+|||+.. .+.. .. .+ . -| -+.|+++.|+
T Consensus 150 ~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~~~~~~~~~~h~~llAHa~A~~~~~~ 229 (477)
T PRK15014 150 KVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENPEETMYQVLHHQFVASALAVKAARR 229 (477)
T ss_pred HHHHHHHHHHHHHHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999999999999632 1111 11 11 1 11 1467888888
Q ss_pred hCCCCeEEEeccCCcccCCCCCCCHH--------------------------HHHHHHHH-------------HhcCcCC
Q 042396 324 LDGATTLFMNDYNTIEDSRDGKATPA--------------------------MYLQKLRQ-------------ISEFPGN 364 (472)
Q Consensus 324 ~dP~a~L~~Ndy~~~~~~~~~~~~~~--------------------------~~~~~~~~-------------l~~~~~~ 364 (472)
..|+.++-+.-....-.|.. .++. .+.+.+.. ++.
T Consensus 230 ~~~~~~IGi~~~~~~~~P~~--~~~~D~~Aa~~~~~~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~---- 303 (477)
T PRK15014 230 INPEMKVGCMLAMVPLYPYS--CNPDDVMFAQESMRERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLR---- 303 (477)
T ss_pred hCCCCeEEEEEeCceeccCC--CCHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHh----
Confidence 88887765432111111110 0110 01111110 010
Q ss_pred CCCcceeeeccccC---------------------CC-----------CHHHHHHHHHHH-HhcCCCEEEeeeccCCC--
Q 042396 365 QNLRIGIGLESHFS---------------------TP-----------NIPYMRASIDTL-GATGLPIWLTEVDVQSS-- 409 (472)
Q Consensus 365 ~G~~DgIG~Q~H~~---------------------~p-----------~~~~~~~~l~~~-a~~g~pi~iTE~dv~~~-- 409 (472)
+|..|=||+.-+.. .| .+..|+..|..+ ...++||.|||-++...
T Consensus 304 ~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~Pi~ItENG~~~~d~ 383 (477)
T PRK15014 304 EGTCDYLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPYVKASDWGWQIDPVGLRYALCELYERYQKPLFIVENGFGAYDK 383 (477)
T ss_pred cCCCCEEEEcceeCeeeccCCCCCCCccccccccCCCCcccCCCCCccCcHHHHHHHHHHHHhcCCCEEEeCCCCCCCCC
Confidence 23236666532210 01 134688888877 46789999999998732
Q ss_pred ---------chHHHHHHHHHHHHHc-----CCCeeEEEEEceecC----CC--CCccccccCC----------CCcchHH
Q 042396 410 ---------PNQAQYLEQILREAHA-----HPKVQGIVVWAAWKP----SG--CYRMCLTDNN----------FKNLATG 459 (472)
Q Consensus 410 ---------~~qA~~~~~~~~~~~s-----~p~v~gi~~Wg~w~~----~~--~~~~~L~d~d----------~~pKPa~ 459 (472)
..+.+|+++.|..+.. --.|.|.+.|++-|. .| ...+||+--| -.||+++
T Consensus 384 ~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~DnfEw~~G~y~~RfGl~~VD~~~~~~~~~~R~pK~S~ 463 (477)
T PRK15014 384 VEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSF 463 (477)
T ss_pred cCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhcccCCCccCccceEEECCCCCCCcccceecccHH
Confidence 1456677776665432 234899999998553 13 2358888433 3489999
Q ss_pred HHHHHHHH
Q 042396 460 DVVDKLLH 467 (472)
Q Consensus 460 ~~~~~li~ 467 (472)
..++++|+
T Consensus 464 ~wy~~ii~ 471 (477)
T PRK15014 464 NWYKEVIA 471 (477)
T ss_pred HHHHHHHH
Confidence 99999995
No 20
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=98.90 E-value=7.2e-08 Score=93.11 Aligned_cols=164 Identities=18% Similarity=0.137 Sum_probs=107.1
Q ss_pred CCceEEEEeeccCccccccccccCch-HHHHHHHHHHh-hCCCCeEEEeccCCcccCCCCCCCHHHHHHHHHHHhcCcCC
Q 042396 287 KGQVIAWDVVNENLHFSFFESKLGQN-ASGVFFNRVHS-LDGATTLFMNDYNTIEDSRDGKATPAMYLQKLRQISEFPGN 364 (472)
Q Consensus 287 ~g~i~~WDVvNE~~~~~~~~~~~G~~-~~~~af~~Ar~-~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (472)
+..+.++-.+|||.... ...+.++ ++..+-+.... .++.++|.--.... ...... ....+++ .+.+-..
T Consensus 63 ~~~~~~ll~fNEPD~~~--qsn~~p~~aa~~w~~~~~~~~~~~~~l~sPa~~~-~~~~~~--~g~~Wl~---~F~~~~~- 133 (239)
T PF11790_consen 63 HPGSKHLLGFNEPDLPG--QSNMSPEEAAALWKQYMNPLRSPGVKLGSPAVAF-TNGGTP--GGLDWLS---QFLSACA- 133 (239)
T ss_pred ccCccceeeecCCCCCC--CCCCCHHHHHHHHHHHHhHhhcCCcEEECCeecc-cCCCCC--CccHHHH---HHHHhcc-
Confidence 66788999999997643 2233333 33333333322 14888887443321 110000 1123432 2222000
Q ss_pred CCCc-ceeeeccccCCCCHHHHHHHHHHH-HhcCCCEEEeeeccCCC------chHHHHHHHHHHHHHcCCCeeEEEEEc
Q 042396 365 QNLR-IGIGLESHFSTPNIPYMRASIDTL-GATGLPIWLTEVDVQSS------PNQAQYLEQILREAHAHPKVQGIVVWA 436 (472)
Q Consensus 365 ~G~~-DgIG~Q~H~~~p~~~~~~~~l~~~-a~~g~pi~iTE~dv~~~------~~qA~~~~~~~~~~~s~p~v~gi~~Wg 436 (472)
+|.. |.|.+ |.+..++..+...|+.+ ..+|+||||||+..... ++|++++++++..+-+.+.|++..|++
T Consensus 134 ~~~~~D~iav--H~Y~~~~~~~~~~i~~~~~~~~kPIWITEf~~~~~~~~~~~~~~~~fl~~~~~~ld~~~~VeryawF~ 211 (239)
T PF11790_consen 134 RGCRVDFIAV--HWYGGDADDFKDYIDDLHNRYGKPIWITEFGCWNGGSQGSDEQQASFLRQALPWLDSQPYVERYAWFG 211 (239)
T ss_pred cCCCccEEEE--ecCCcCHHHHHHHHHHHHHHhCCCEEEEeecccCCCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEecc
Confidence 2455 99999 77765677888889988 67899999999987532 378999999999999999999999999
Q ss_pred eecCC--CCCccccccCCCCcchHHHH
Q 042396 437 AWKPS--GCYRMCLTDNNFKNLATGDV 461 (472)
Q Consensus 437 ~w~~~--~~~~~~L~d~d~~pKPa~~~ 461 (472)
+.... ......|++.++++.|+++.
T Consensus 212 ~~~~~~~~~~~~~L~~~~G~lt~lG~~ 238 (239)
T PF11790_consen 212 FMNDGSGVNPNSALLDADGSLTPLGKA 238 (239)
T ss_pred cccccCCCccccccccCCCCcChhhhh
Confidence 54322 12356799999999998865
No 21
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=98.89 E-value=5.7e-07 Score=94.99 Aligned_cols=256 Identities=13% Similarity=0.090 Sum_probs=158.7
Q ss_pred ccccceeeCCCCCCcccccC-CCCCCcch---HHHHHHHHHhCCcEEEEeEeecCCCCCCCcccCC---CCHHHHHHHHH
Q 042396 204 SRFKVTAFEDEMKWYSTEAS-PGREDYSA---SDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVNS---LSPSDLSKAAD 276 (472)
Q Consensus 204 ~~fn~vt~en~~kW~~~ep~-~g~~~~~~---~D~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~~~---~~~~~~~~~~~ 276 (472)
-++|+-++ .+.|..++|. .|.+|-+. -+++++-|.++||+..- | ++|- -+|.|+.. +...++.+.+.
T Consensus 65 lG~~~yRf--SIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~V-T-L~H~--dlP~~L~~~GGW~n~~~v~~F~ 138 (467)
T TIGR01233 65 YGVNGIRI--SIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFV-T-LHHF--DTPEALHSNGDFLNRENIEHFI 138 (467)
T ss_pred cCCCEEEE--ecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEE-e-ccCC--CCcHHHHHcCCCCCHHHHHHHH
Confidence 48999999 8999999996 46665543 47899999999999763 3 3342 38988853 34567789999
Q ss_pred HHHHHHhhhcCCceEEEEeeccCccccc---ccc--ccCc-----h-H---------HHHHHHHHHhhCCCCeEEEeccC
Q 042396 277 KRINSVTSRYKGQVIAWDVVNENLHFSF---FES--KLGQ-----N-A---------SGVFFNRVHSLDGATTLFMNDYN 336 (472)
Q Consensus 277 ~~i~~v~~ry~g~i~~WDVvNE~~~~~~---~~~--~~G~-----~-~---------~~~af~~Ar~~dP~a~L~~Ndy~ 336 (472)
+|.+.++++|++ |..|=-.|||+.... ... ..|. . | -+.|+++.|+..|+.++-+.-..
T Consensus 139 ~YA~~~f~~fgd-Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~a~hn~l~AHa~A~~~~~~~~~~~~IGi~~~~ 217 (467)
T TIGR01233 139 DYAAFCFEEFPE-VNYWTTFNEIGPIGDGQYLVGKFPPGIKYDLAKVFQSHHNMMVSHARAVKLYKDKGYKGEIGVVHAL 217 (467)
T ss_pred HHHHHHHHHhCC-CCEEEEecchhhhhhccchhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 999999999997 999999999964211 000 1111 1 1 15778888888898777653222
Q ss_pred CcccCCCCCCCHHHHH-----H-------------------HHHHHhcC-----------------cC-CCCCcceeeec
Q 042396 337 TIEDSRDGKATPAMYL-----Q-------------------KLRQISEF-----------------PG-NQNLRIGIGLE 374 (472)
Q Consensus 337 ~~~~~~~~~~~~~~~~-----~-------------------~~~~l~~~-----------------~~-~~G~~DgIG~Q 374 (472)
..-.|..+ ..+.+.. . +.+.+... +. .+|..|=||++
T Consensus 218 ~~~~P~~~-~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGin 296 (467)
T TIGR01233 218 PTKYPYDP-ENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGIN 296 (467)
T ss_pred ceeEECCC-CCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEc
Confidence 11112110 0111000 0 00001000 00 01222555553
Q ss_pred cccC----------------------------------C----C--------CHHHHHHHHHHHH-hcCC--CEEEeeec
Q 042396 375 SHFS----------------------------------T----P--------NIPYMRASIDTLG-ATGL--PIWLTEVD 405 (472)
Q Consensus 375 ~H~~----------------------------------~----p--------~~~~~~~~l~~~a-~~g~--pi~iTE~d 405 (472)
-+.. . + .+..|+..|..+. ..++ ||.|||-+
T Consensus 297 yYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG 376 (467)
T TIGR01233 297 YYMSDWMQAFDGETEIIHNGKGEKGSSKYQIKGVGRRVAPDYVPRTDWDWIIYPEGLYDQIMRVKNDYPNYKKIYITENG 376 (467)
T ss_pred cccceeeccCCCccccccCCccccCcccccCCCcccccCCCCCCcCCCCCeeChHHHHHHHHHHHHHcCCCCCEEEeCCC
Confidence 2110 0 0 1346888888774 6776 69999998
Q ss_pred cCCC----------chHHHHHHHHHHHHHc----CCCeeEEEEEceecCC----CC-CccccccCCCC-----cchHHHH
Q 042396 406 VQSS----------PNQAQYLEQILREAHA----HPKVQGIVVWAAWKPS----GC-YRMCLTDNNFK-----NLATGDV 461 (472)
Q Consensus 406 v~~~----------~~qA~~~~~~~~~~~s----~p~v~gi~~Wg~w~~~----~~-~~~~L~d~d~~-----pKPa~~~ 461 (472)
+... +.+.+|+++.|..+.. --.|.|.+.|++-|.- |. ..+||+--|+. ||+++..
T Consensus 377 ~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~Ew~~Gy~~RfGLv~VD~~t~~R~~K~S~~w 456 (467)
T TIGR01233 377 LGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFDTQERYPKKSAHW 456 (467)
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCccccccHHHH
Confidence 8732 2456677776665542 2358999999986642 21 25888855543 8999999
Q ss_pred HHHHHH
Q 042396 462 VDKLLH 467 (472)
Q Consensus 462 ~~~li~ 467 (472)
++++|+
T Consensus 457 y~~ii~ 462 (467)
T TIGR01233 457 YKKLAE 462 (467)
T ss_pred HHHHHH
Confidence 999995
No 22
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=98.89 E-value=7.5e-07 Score=94.24 Aligned_cols=252 Identities=15% Similarity=0.129 Sum_probs=159.2
Q ss_pred ccccceeeCCCCCCcccccC--CCCCCcch---HHHHHHHHHhCCcEEEEeEeecCCCCCCCcccCC----CCHHHHHHH
Q 042396 204 SRFKVTAFEDEMKWYSTEAS--PGREDYSA---SDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVNS----LSPSDLSKA 274 (472)
Q Consensus 204 ~~fn~vt~en~~kW~~~ep~--~g~~~~~~---~D~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~~~----~~~~~~~~~ 274 (472)
-++|+-++ .+.|..++|. .|.+|-+. -+++++-|.++||+..- || +|- -+|.|+.. +...++.+.
T Consensus 79 lG~~~yRf--SIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~V-TL-~H~--dlP~~L~~~yGGW~n~~~i~~ 152 (476)
T PRK09589 79 MGFKCFRT--SIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVV-TL-SHF--EMPYHLVTEYGGWRNRKLIDF 152 (476)
T ss_pred cCCCEEEe--ccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE-Ee-cCC--CCCHHHHHhcCCcCChHHHHH
Confidence 48999999 8999999997 44455543 47899999999998863 33 332 37988842 344577899
Q ss_pred HHHHHHHHhhhcCCceEEEEeeccCcccc--------cc-cc---ccCc---h--H---------HHHHHHHHHhhCCCC
Q 042396 275 ADKRINSVTSRYKGQVIAWDVVNENLHFS--------FF-ES---KLGQ---N--A---------SGVFFNRVHSLDGAT 328 (472)
Q Consensus 275 ~~~~i~~v~~ry~g~i~~WDVvNE~~~~~--------~~-~~---~~G~---~--~---------~~~af~~Ar~~dP~a 328 (472)
+.+|.+.++++|+++|..|=-.|||+... .. .. ..|. . | -+.|+++.|+..|+.
T Consensus 153 F~~YA~~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~~~~~~~~~~h~~llAha~A~~~~~~~~~~~ 232 (476)
T PRK09589 153 FVRFAEVVFTRYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGEDREQIMYQAAHYELVASALAVKTGHEINPDF 232 (476)
T ss_pred HHHHHHHHHHHhcCCCCEEEEecchhhhhccccccCCccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999996421 11 00 1121 1 2 146788888888887
Q ss_pred eEEEeccCCcccCCCCCCCHH--------------------------HHHHHHHH-------------HhcCcCCCCCcc
Q 042396 329 TLFMNDYNTIEDSRDGKATPA--------------------------MYLQKLRQ-------------ISEFPGNQNLRI 369 (472)
Q Consensus 329 ~L~~Ndy~~~~~~~~~~~~~~--------------------------~~~~~~~~-------------l~~~~~~~G~~D 369 (472)
++-+.-....-.|.. .++. .+.+.+.. ++. +|..|
T Consensus 233 ~iG~~~~~~~~~P~~--~~~~d~~aa~~~~~~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~----~g~~D 306 (476)
T PRK09589 233 QIGCMIAMCPIYPLT--CAPNDMMMATKAMHRRYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILA----EGCVD 306 (476)
T ss_pred cEEEEEeCCeeeeCC--CCHHHHHHHHHHHHhccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHh----cCCCC
Confidence 764321111011110 0110 11111110 111 23236
Q ss_pred eeeeccccCC----------------------C-----------CHHHHHHHHHHH-HhcCCCEEEeeeccCCC------
Q 042396 370 GIGLESHFST----------------------P-----------NIPYMRASIDTL-GATGLPIWLTEVDVQSS------ 409 (472)
Q Consensus 370 gIG~Q~H~~~----------------------p-----------~~~~~~~~l~~~-a~~g~pi~iTE~dv~~~------ 409 (472)
=||++-+... | .+..|+..|..+ .+.++||.|||-++...
T Consensus 307 FlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~~Y~~Pi~ItENG~~~~d~~~~~ 386 (476)
T PRK09589 307 YIGFSYYMSFATKFHEDNPQLDYVETRDLVSNPYVKASEWGWQIDPAGLRYSLNWFWDHYQLPLFIVENGFGAIDQREAD 386 (476)
T ss_pred EEEEecccCcccccCCCCCCCCcccccccccCCCcccCCCCCccCcHHHHHHHHHHHHhcCCCEEEEeCCcccCCCCCcC
Confidence 5665322110 0 134688888877 46799999999988732
Q ss_pred -----chHHHHHHHHHHHHHc-----CCCeeEEEEEceecC----CC--CCccccccCCCC----------cchHHHHHH
Q 042396 410 -----PNQAQYLEQILREAHA-----HPKVQGIVVWAAWKP----SG--CYRMCLTDNNFK----------NLATGDVVD 463 (472)
Q Consensus 410 -----~~qA~~~~~~~~~~~s-----~p~v~gi~~Wg~w~~----~~--~~~~~L~d~d~~----------pKPa~~~~~ 463 (472)
+.+-+|+++.|..+.. --.|.|.+.|++-|. .| ...+||+--|+. ||+++..++
T Consensus 387 g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGlv~VD~~~~~~~t~~R~pK~S~~wy~ 466 (476)
T PRK09589 387 GTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDLVSAGTGEMKKRYGFIYVDKDNEGKGTLERSRKKSFYWYR 466 (476)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccccccccccCCccccceeeEEEcCCCCCCcccccccccHHHHHH
Confidence 1455677766665432 234899999998653 23 236888855443 899999999
Q ss_pred HHHH
Q 042396 464 KLLH 467 (472)
Q Consensus 464 ~li~ 467 (472)
++|+
T Consensus 467 ~~i~ 470 (476)
T PRK09589 467 DVIA 470 (476)
T ss_pred HHHH
Confidence 9995
No 23
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.51 E-value=1.8e-05 Score=79.75 Aligned_cols=257 Identities=13% Similarity=0.113 Sum_probs=135.0
Q ss_pred cceEEeecCCCCCCHHHHHHH----HccccceeeCCCCCCcccccCCCCCCcc---hHHHHHHHHHhCCcEEEEe--Eee
Q 042396 182 FPFGCAINKNILTNTAYQNWF----TSRFKVTAFEDEMKWYSTEASPGREDYS---ASDAMLQFAKNHNIAVRGH--NIF 252 (472)
Q Consensus 182 f~fG~av~~~~~~~~~~~~~~----~~~fn~vt~en~~kW~~~ep~~g~~~~~---~~D~~v~~a~~~gi~vrGH--~lv 252 (472)
|.++..+|...+..+.+++.+ ..+||.|.. -+.|...||++|+|||+ ..+++++.|+++||.|.-. +-+
T Consensus 10 ~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~--yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi 87 (319)
T PF01301_consen 10 FILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVST--YVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYI 87 (319)
T ss_dssp -EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEE--E--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES--
T ss_pred EEEEeeeccccCChhHHHHHHHHHHhCCcceEEE--eccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEeccccee
Confidence 678899998877744444443 469999988 79999999999999999 4789999999999987422 111
Q ss_pred ---cCCCCCCCcccCCC-------CHHHHHHHHHHHHHHHhhhc-------CCceEEEEeeccCccccccccccCchHHH
Q 042396 253 ---WDDPQYQPGWVNSL-------SPSDLSKAADKRINSVTSRY-------KGQVIAWDVVNENLHFSFFESKLGQNASG 315 (472)
Q Consensus 253 ---W~~~~~~P~W~~~~-------~~~~~~~~~~~~i~~v~~ry-------~g~i~~WDVvNE~~~~~~~~~~~G~~~~~ 315 (472)
|.. +..|.|+... +.+..+++++.+.+.++..- +|.|....|=||-- ......+|++
T Consensus 88 ~aE~~~-gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg-----~~~~~~~Y~~ 161 (319)
T PF01301_consen 88 CAEWDN-GGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG-----SYGTDRAYME 161 (319)
T ss_dssp -TTBGG-GG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG-----CTSS-HHHHH
T ss_pred cccccc-hhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC-----CCcccHhHHH
Confidence 221 2489998642 23556777777777766542 36899999999963 1122357998
Q ss_pred HHHHHHHhhCCC-CeEEEeccCCcccCCCCCCCHHHHHHHHHHHhcCcCCCC--CcceeeeccccCCCCHHHHHHHHHHH
Q 042396 316 VFFNRVHSLDGA-TTLFMNDYNTIEDSRDGKATPAMYLQKLRQISEFPGNQN--LRIGIGLESHFSTPNIPYMRASIDTL 392 (472)
Q Consensus 316 ~af~~Ar~~dP~-a~L~~Ndy~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G--~~DgIG~Q~H~~~p~~~~~~~~l~~~ 392 (472)
..-+.+++.-++ +.++-.|......... . . . .| +...++++++. +..+....++.+
T Consensus 162 ~l~~~~~~~g~~~~~~~t~d~~~~~~~~~------~------~--~----~g~~~~~~~~~~~~~---~~~~~~~~~~~~ 220 (319)
T PF01301_consen 162 ALKDAYRDWGIDPVLLYTTDGPWGSWLPD------G------G--L----PGADIYATDNFPPGD---NPDEYFGDQRSF 220 (319)
T ss_dssp HHHHHHHHTT-SSSBEEEEESSSHCCHCC------C---------T----TTGSCEEEEEETTTS---SHHHHHHHHHHH
T ss_pred HHHHHHHHhhCccceeeccCCCccccccc------C------C--C----CcceEEeccccCCCc---hHHHHHhhhhhc
Confidence 888888888777 4444444321110000 0 0 0 12 22455554441 111111222333
Q ss_pred HhcCCCEEEeeeccCCC-----c---hHHHHHHHHHHHHHcCCCeeEEEE------EceecCC--------CCC-ccccc
Q 042396 393 GATGLPIWLTEVDVQSS-----P---NQAQYLEQILREAHAHPKVQGIVV------WAAWKPS--------GCY-RMCLT 449 (472)
Q Consensus 393 a~~g~pi~iTE~dv~~~-----~---~qA~~~~~~~~~~~s~p~v~gi~~------Wg~w~~~--------~~~-~~~L~ 449 (472)
..+.|..++|+..... + .-++.+...+...++.....++.+ ||+|... ..+ ....+
T Consensus 221 -~p~~P~~~~E~~~Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI 299 (319)
T PF01301_consen 221 -QPNQPLMCTEFWGGWFDHWGGPHYTRPAEDVAADLARMLSKGNSLNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPI 299 (319)
T ss_dssp -HTTS--EEEEEESS---BTTS--HHHHHHHHHHHHHHHHHHCSEEEEEECE--B--TT-B-EETTTEEB-SB--TT-SB
T ss_pred -CCCCCeEEEEeccccccccCCCCccCCHHHHHHHHHHHHHhhcccceeeccccCCccccccCCCCCCCCcccCCcCCcc
Confidence 3356999999964432 1 112223333333333333333333 3445421 112 35678
Q ss_pred cCCCCcchHHHHHHHHHHH
Q 042396 450 DNNFKNLATGDVVDKLLHE 468 (472)
Q Consensus 450 d~d~~pKPa~~~~~~li~e 468 (472)
+++++++|-|..++.|+++
T Consensus 300 ~E~G~~~~Ky~~lr~l~~~ 318 (319)
T PF01301_consen 300 DEYGQLTPKYYELRRLHQK 318 (319)
T ss_dssp -TTS-B-HHHHHHHHHHHT
T ss_pred CcCCCcCHHHHHHHHHHhc
Confidence 9999999999999999864
No 24
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.36 E-value=5.7e-05 Score=78.20 Aligned_cols=258 Identities=15% Similarity=0.162 Sum_probs=158.1
Q ss_pred HHHH-ccccceeeCCCCCCcccccCCCC--CCcch---HHHHHHHHHhCCcEEEEeEeecCCCCCCCcccCC----CCHH
Q 042396 200 NWFT-SRFKVTAFEDEMKWYSTEASPGR--EDYSA---SDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVNS----LSPS 269 (472)
Q Consensus 200 ~~~~-~~fn~vt~en~~kW~~~ep~~g~--~~~~~---~D~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~~~----~~~~ 269 (472)
++++ -+||+.++ .+.|..+.|..+. .|=.. -|++++-|.++||+..--.-.|. +|-|+.. +...
T Consensus 66 ~L~~emG~~~~R~--SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd----~P~~L~~~ygGW~nR 139 (460)
T COG2723 66 ALAKEMGLNAFRT--SIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFD----LPLWLQKPYGGWENR 139 (460)
T ss_pred HHHHHcCCCEEEe--eeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccC----CcHHHhhccCCccCH
Confidence 3444 48999988 8999999997665 55433 48899999999999864322343 6777753 2235
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeeccCcccc-------ccccc-cCch--H---------HHHHHHHHHhhCCC--C
Q 042396 270 DLSKAADKRINSVTSRYKGQVIAWDVVNENLHFS-------FFESK-LGQN--A---------SGVFFNRVHSLDGA--T 328 (472)
Q Consensus 270 ~~~~~~~~~i~~v~~ry~g~i~~WDVvNE~~~~~-------~~~~~-~G~~--~---------~~~af~~Ar~~dP~--a 328 (472)
++..++.+|++.++.||+++|.+|=..|||+... .+... .... | -+.|.+..|+..|+ +
T Consensus 140 ~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~~~~~~y~~~~~~p~~~~~~~~~qa~hh~~lA~A~avk~~~~~~~~~kI 219 (460)
T COG2723 140 ETVDAFARYAATVFERFGDKVKYWFTFNEPNVVVELGYLYGGHPPGIVDPKAAYQVAHHMLLAHALAVKAIKKINPKGKV 219 (460)
T ss_pred HHHHHHHHHHHHHHHHhcCcceEEEEecchhhhhcccccccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcCce
Confidence 6788999999999999999999999999997421 11100 0011 1 14677888888885 5
Q ss_pred eEEEeccCCcccCCCCCCCHHHHHH------------------------HHHHHhcC------------cCCCCCcceee
Q 042396 329 TLFMNDYNTIEDSRDGKATPAMYLQ------------------------KLRQISEF------------PGNQNLRIGIG 372 (472)
Q Consensus 329 ~L~~Ndy~~~~~~~~~~~~~~~~~~------------------------~~~~l~~~------------~~~~G~~DgIG 372 (472)
-..+|--.. .|-+ .++.+.+. +++.|++. ...++..|=||
T Consensus 220 G~~~~~~p~--YP~s--~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG 295 (460)
T COG2723 220 GIILNLTPA--YPLS--DKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIG 295 (460)
T ss_pred EEEeccCcC--CCCC--CCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEE
Confidence 555552211 1111 11111100 11111110 00033347777
Q ss_pred ecccc-C--------------------C---C-----------CHHHHHHHHHHHH-hcCCCEEEeeeccCCC-------
Q 042396 373 LESHF-S--------------------T---P-----------NIPYMRASIDTLG-ATGLPIWLTEVDVQSS------- 409 (472)
Q Consensus 373 ~Q~H~-~--------------------~---p-----------~~~~~~~~l~~~a-~~g~pi~iTE~dv~~~------- 409 (472)
+--+. . . | .+..|+..|.++. +.++|+.|||-++...
T Consensus 296 ~NYY~~s~v~~~~~~~~~~~~~~~~~~~~~~p~~~~sdwGWeI~P~GL~~~l~~~~~rY~~p~fItENG~G~~d~~~~~~ 375 (460)
T COG2723 296 LNYYTPSRVKAAEPRYVSGYGPGGFFTSVPNPGLEVSDWGWEIYPKGLYDILEKLYERYGIPLFITENGLGVKDEVDFDG 375 (460)
T ss_pred EeeeeeeeEeeccCCcCCcccccccccccCCCCCcccCCCceeChHHHHHHHHHHHHHhCCCeEEecCCCCcccccccCC
Confidence 74333 0 0 1 1357888888886 7899999999775432
Q ss_pred ---chHHHHHHHHHHHHH----cCCCeeEEEEEceecCC----CC-Cccccc--cC----CCCcchHHHHHHHHHH
Q 042396 410 ---PNQAQYLEQILREAH----AHPKVQGIVVWAAWKPS----GC-YRMCLT--DN----NFKNLATGDVVDKLLH 467 (472)
Q Consensus 410 ---~~qA~~~~~~~~~~~----s~p~v~gi~~Wg~w~~~----~~-~~~~L~--d~----d~~pKPa~~~~~~li~ 467 (472)
+-+-+|+++.+..+. .--.|.|.+.|++-|-- |. ..+||+ |. ...+|+++..+++++.
T Consensus 376 i~DdyRI~Yl~~Hl~~v~~AI~dGv~v~GY~~Ws~iD~~sw~~gy~kRYGli~VD~~~~~~R~~KkS~~WyK~vi~ 451 (460)
T COG2723 376 INDDYRIDYLKEHLKAVKKAIEDGVDVRGYFAWSLIDNYSWANGYKKRYGLVYVDYDTDLERTPKKSFYWYKEVIE 451 (460)
T ss_pred cCchHHHHHHHHHHHHHHHHHHcCCCcccceecccccccchhhccccccccEEEcccccceeeecCceeeeHHHHh
Confidence 134466776665543 22458999999975532 21 245655 22 3358889999999884
No 25
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=98.33 E-value=8.5e-06 Score=81.31 Aligned_cols=212 Identities=12% Similarity=0.102 Sum_probs=122.6
Q ss_pred HccccceeeCCCCCCcccccCCCCCCcchHHHHHHHHHhCCcEEEEeEeecCCCCCCCccc---CCCCHHHHHHHHHHHH
Q 042396 203 TSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWV---NSLSPSDLSKAADKRI 279 (472)
Q Consensus 203 ~~~fn~vt~en~~kW~~~ep~~g~~~~~~~D~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~---~~~~~~~~~~~~~~~i 279 (472)
..+||+++.. -+ -...+++++|.+.||.|-.=...+... ....+- .....++..+.+.+.+
T Consensus 47 ~~G~N~iR~~--h~-------------p~~~~~~~~cD~~GilV~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (298)
T PF02836_consen 47 EMGFNAIRTH--HY-------------PPSPRFYDLCDELGILVWQEIPLEGHG-SWQDFGNCNYDADDPEFRENAEQEL 110 (298)
T ss_dssp HTT-SEEEET--TS---------------SHHHHHHHHHHT-EEEEE-S-BSCT-SSSSTSCTSCTTTSGGHHHHHHHHH
T ss_pred hcCcceEEcc--cc-------------cCcHHHHHHHhhcCCEEEEeccccccC-ccccCCccccCCCCHHHHHHHHHHH
Confidence 4699999981 11 234789999999999886433331110 000000 0112345677888999
Q ss_pred HHHhhhcCC--ceEEEEeeccCccccccccccCchHHHHHHHHHHhhCCCCeEEEeccCCcccCCCCCCCHHHHHHHHHH
Q 042396 280 NSVTSRYKG--QVIAWDVVNENLHFSFFESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLRQ 357 (472)
Q Consensus 280 ~~v~~ry~g--~i~~WDVvNE~~~~~~~~~~~G~~~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~~~~ 357 (472)
++++.|++. .|..|.+-||+ ....+++...+.+|+.||+-.+.++.... ...
T Consensus 111 ~~~v~~~~NHPSIi~W~~gNE~---------~~~~~~~~l~~~~k~~DptRpv~~~~~~~-~~~---------------- 164 (298)
T PF02836_consen 111 REMVRRDRNHPSIIMWSLGNES---------DYREFLKELYDLVKKLDPTRPVTYASNGW-DPY---------------- 164 (298)
T ss_dssp HHHHHHHTT-TTEEEEEEEESS---------HHHHHHHHHHHHHHHH-TTSEEEEETGTS-GGS----------------
T ss_pred HHHHHcCcCcCchheeecCccC---------ccccchhHHHHHHHhcCCCCceeeccccc-ccc----------------
Confidence 999999987 79999999998 22457888999999999997665543311 000
Q ss_pred HhcCcCCCCCcceeee--ccccC--CCCHHHHHHHHHHH-HhcCCCEEEeeeccCCCc------hHHH-----------H
Q 042396 358 ISEFPGNQNLRIGIGL--ESHFS--TPNIPYMRASIDTL-GATGLPIWLTEVDVQSSP------NQAQ-----------Y 415 (472)
Q Consensus 358 l~~~~~~~G~~DgIG~--Q~H~~--~p~~~~~~~~l~~~-a~~g~pi~iTE~dv~~~~------~qA~-----------~ 415 (472)
.|.+++ -...+ .+.+..+...++.. ...++|+.+||++....+ .... +
T Consensus 165 ----------~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~kP~i~sEyg~~~~~~~g~~~~~~~~~~~~~~~q~~~ 234 (298)
T PF02836_consen 165 ----------VDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDKPIIISEYGADAYNSKGGDSEYWQLWSWYEEYQGAF 234 (298)
T ss_dssp ----------TSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS-EEEEEESEBBSST-TTHHHHHHHHHHCTTEEEEE
T ss_pred ----------cccccccccccccCCcccHHHHHHHHHhccccCCCCeEehhccccccccCCCccccccccccCchhhhhh
Confidence 011111 01111 13455566666663 578999999999876552 0111 1
Q ss_pred HHHHHHHHH--cCCCeeEEEEEceecCC---C---CCccccccCCCCcchHHHHHHHHH
Q 042396 416 LEQILREAH--AHPKVQGIVVWAAWKPS---G---CYRMCLTDNNFKNLATGDVVDKLL 466 (472)
Q Consensus 416 ~~~~~~~~~--s~p~v~gi~~Wg~w~~~---~---~~~~~L~d~d~~pKPa~~~~~~li 466 (472)
...+...+. ..+.+.|-.+|.+.|=. + ...-||+|.|.+||++|..++++.
T Consensus 235 ~~~~~~~~~~~~~~~~~g~~~w~~~Df~~~~~~~~~~~nGlv~~dR~pK~~~~~~k~~~ 293 (298)
T PF02836_consen 235 IWDYQDQAIQRRDPYVAGEFYWTGFDFGTEPTDYEFEYNGLVDYDRRPKPAYYEYKSQW 293 (298)
T ss_dssp ESHSBHHHEEEEETTESEEEEEETTTTSCSSBTGGGGSBESBETTSEBBHHHHHHHHHH
T ss_pred hhhhhhhhhccccccccceeeecceEeccCCCCCeeeeccEECCcCCcCHHHHHHHHHh
Confidence 111222222 23556666666644311 1 113499999999999999887764
No 26
>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins.
Probab=98.18 E-value=4.7e-05 Score=68.81 Aligned_cols=87 Identities=15% Similarity=0.151 Sum_probs=55.8
Q ss_pred eeeEEEeeecCCEEEEEEEEEecCC-CccEEEEEEECCeEEEeeeEEEeCCCeEEEEeeEeeCCCccEEEEEEeC----C
Q 042396 46 CISQKVYLEKNKFYTLSAWIQVSEG-AAPVTAVFKTITGFKHAGAAVAESKCWSMLKGGLSPDASGFAELYFESK----N 120 (472)
Q Consensus 46 g~~~~~~l~~G~~Y~~SawVk~~~g-~~~~~~~~~~~~~~~~~~~~~v~~~~W~~l~g~~t~~~~~~~~iy~e~~----~ 120 (472)
.++|++...+|++|++|+.+.-... +..+.+.+................+.|+..+-.|++.. +.+.|.+..+ +
T Consensus 68 ~I~Q~~~t~~G~~Y~LtF~~~~~~~~~~~l~V~v~~~~~~~~~~~~~~~~~~w~~~s~~F~A~~-t~~~l~f~~~~~~~d 146 (159)
T PF04862_consen 68 SISQTFTTVPGSTYTLTFSLARNCAQSESLSVSVGGQFSFVVTIQTSYGSGGWDTYSFTFTASS-TRITLTFHNPGMESD 146 (159)
T ss_pred eEEEEEEccCCCEEEEEEEecCCCCCCccEEEEEecccceEEEeeccCCCCCcEEEEEEEEeCC-CEEEEEEECCCccCC
Confidence 7899999999999999999982211 22355554332112222222333567999999999944 7777777554 2
Q ss_pred CceeEEEcccccc
Q 042396 121 TSVDIWVDSISLQ 133 (472)
Q Consensus 121 ~~~~~yvDdv~l~ 133 (472)
..--=+||||+|+
T Consensus 147 ~~cGp~iDnV~vk 159 (159)
T PF04862_consen 147 SACGPVIDNVSVK 159 (159)
T ss_pred CCceeEEEEEEeC
Confidence 2334469999873
No 27
>PLN03089 hypothetical protein; Provisional
Probab=98.16 E-value=3.2e-05 Score=78.15 Aligned_cols=87 Identities=14% Similarity=0.089 Sum_probs=53.7
Q ss_pred eeeEEEeeecCCEEEEEEEEEecCC--CccEEEEEEE--CC-eEEEeeeEEEeCCCeEEEEeeEeeCCC-ccEE---EEE
Q 042396 46 CISQKVYLEKNKFYTLSAWIQVSEG--AAPVTAVFKT--IT-GFKHAGAAVAESKCWSMLKGGLSPDAS-GFAE---LYF 116 (472)
Q Consensus 46 g~~~~~~l~~G~~Y~~SawVk~~~g--~~~~~~~~~~--~~-~~~~~~~~~v~~~~W~~l~g~~t~~~~-~~~~---iy~ 116 (472)
+++|.+...+|++|++|+.+=-..+ ..++.+.... .. +..... .-.|.|++-+-.|++... +.+. +|.
T Consensus 266 aI~Q~v~T~~G~~Y~LsFs~g~a~~~c~gs~~V~a~ag~~~~~v~~~s---~g~gg~~~~s~~F~A~s~~Trl~F~s~~y 342 (373)
T PLN03089 266 AIAQVVRTVPGKSYNLSFTVGDANNGCHGSMMVEAFAGKDTQKVPYES---QGKGGFKRASLRFKAVSNRTRITFYSSFY 342 (373)
T ss_pred eEEEEEEccCCCEEEEEEEEccCCCCCCCcEEEEEEeecccceEEEec---CCCcceEEEEEEEEeccCCEEEEEEEeec
Confidence 8999999999999999999854332 2234444333 11 111111 114579999999998765 3332 233
Q ss_pred EeCC-CceeEE---Ecccccccc
Q 042396 117 ESKN-TSVDIW---VDSISLQPF 135 (472)
Q Consensus 117 e~~~-~~~~~y---vDdv~l~~~ 135 (472)
.+.. .....+ ||||+|.+.
T Consensus 343 ~~~~d~~~~~cGPvlDdV~v~~~ 365 (373)
T PLN03089 343 HTKSDDFGSLCGPVVDDVRVVPV 365 (373)
T ss_pred ccccCcCCCcccceeeeEEEEEc
Confidence 3322 234455 999999864
No 28
>PLN03089 hypothetical protein; Provisional
Probab=97.93 E-value=0.00019 Score=72.70 Aligned_cols=127 Identities=16% Similarity=0.318 Sum_probs=77.2
Q ss_pred CCCCCCCCCceeeCCCCCCC----------------CCCeeEecceEEEEec------------CCCcee-------eee
Q 042396 4 KPHKPQYGGGIIKNPELSHG----------------LKGWSAFGNAKIEQRE------------SGGNNS-------CIS 48 (472)
Q Consensus 4 ~p~~p~~~~~li~n~~FE~g----------------~~gW~~~g~~~~~~~~------------~~G~~~-------g~~ 48 (472)
.....+...|||.|++||.| +.||...| .|+..+ +.|.+. +++
T Consensus 19 ~~~~~~~~~nLL~NG~FE~gP~~~~~n~t~~~g~s~LPgW~i~g--~VeyI~s~~~~~~m~~~vP~G~~Av~LG~e~sI~ 96 (373)
T PLN03089 19 AASAAPVTDGLLPNGDFETPPKKSQMNGTVVIGKNAIPGWEISG--FVEYISSGQKQGGMLLVVPEGAHAVRLGNEASIS 96 (373)
T ss_pred ccccccccCCeecCCCccCCCCcCCCCcccccCCCCCCCCEecC--cEEEEeCCCccCceeEECCCCchhhhcCCCceEE
Confidence 33446677899999999976 34577555 333221 233322 899
Q ss_pred EEEeeecCCEEEEEEEEEecCCCcc--EEEEEEECCeEEEeeeEEEeCCCeEEEEeeEeeCCCccEEEEEEeCCCce--e
Q 042396 49 QKVYLEKNKFYTLSAWIQVSEGAAP--VTAVFKTITGFKHAGAAVAESKCWSMLKGGLSPDASGFAELYFESKNTSV--D 124 (472)
Q Consensus 49 ~~~~l~~G~~Y~~SawVk~~~g~~~--~~~~~~~~~~~~~~~~~~v~~~~W~~l~g~~t~~~~~~~~iy~e~~~~~~--~ 124 (472)
|.+.+.+|+.|.+|+++- ..-+.. +.+.+....+..... ..-.+++|+...-.|++..+ ..+|.|..+.... .
T Consensus 97 Q~i~t~~G~~Y~LTFs~a-r~c~~~~~v~vsv~~~~~~~~~q-t~~~~~gw~~~s~~F~A~s~-~t~l~F~~~~~~~D~~ 173 (373)
T PLN03089 97 QTLTVTKGSYYSLTFSAA-RTCAQDESLNVSVPPESGVLPLQ-TLYSSSGWDSYAWAFKAESD-VVNLVFHNPGVEEDPA 173 (373)
T ss_pred EEEEccCCCEEEEEEEec-CCCCCCceEEEEecCCCcEEeeE-EeccCCCcEEEEEEEEEecc-cEEEEEECcccCCCCc
Confidence 999999999999999997 322222 444332222111111 12357899999999998764 3455554332111 1
Q ss_pred E--EEcccccccc
Q 042396 125 I--WVDSISLQPF 135 (472)
Q Consensus 125 ~--yvDdv~l~~~ 135 (472)
. .||||+|..+
T Consensus 174 CGPviD~VaIk~l 186 (373)
T PLN03089 174 CGPLIDAVAIKTL 186 (373)
T ss_pred ccceeeeEEEeec
Confidence 2 3999998753
No 29
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=97.91 E-value=0.0015 Score=75.69 Aligned_cols=201 Identities=13% Similarity=0.122 Sum_probs=125.0
Q ss_pred ccccceeeCCCCCCcccccCCCCCCcchHHHHHHHHHhCCcEEEEeEee-cCCCCCCC--cccCCCCHHHHHHHHHHHHH
Q 042396 204 SRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHNIAVRGHNIF-WDDPQYQP--GWVNSLSPSDLSKAADKRIN 280 (472)
Q Consensus 204 ~~fn~vt~en~~kW~~~ep~~g~~~~~~~D~~v~~a~~~gi~vrGH~lv-W~~~~~~P--~W~~~~~~~~~~~~~~~~i~ 280 (472)
.+||+|+. .. +-...++++.|.+.||-|.-=.-+ +|...... .|+ .+.+...+++.+.++
T Consensus 367 ~g~NavR~--sH-------------yP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~--~~~p~~~~~~~~~~~ 429 (1021)
T PRK10340 367 HNINSVRT--AH-------------YPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRI--TDDPQWEKVYVDRIV 429 (1021)
T ss_pred CCCCEEEe--cC-------------CCCCHHHHHHHHHCCCEEEECCcccccCcccccccccc--cCCHHHHHHHHHHHH
Confidence 58999987 11 123467899999999976532211 11100001 121 123455677788899
Q ss_pred HHhhhcCC--ceEEEEeeccCccccccccccCchHHHHHHHHHHhhCCCCeEEEeccCCcccCCCCCCCHHHHHHHHHHH
Q 042396 281 SVTSRYKG--QVIAWDVVNENLHFSFFESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLRQI 358 (472)
Q Consensus 281 ~v~~ry~g--~i~~WDVvNE~~~~~~~~~~~G~~~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~~~~l 358 (472)
+++.|++. .|..|-+-||.-. |. .+..+++++|+.||.-.+-+.+ ..
T Consensus 430 ~mV~RdrNHPSIi~WslGNE~~~--------g~-~~~~~~~~~k~~DptR~v~~~~------~~---------------- 478 (1021)
T PRK10340 430 RHIHAQKNHPSIIIWSLGNESGY--------GC-NIRAMYHAAKALDDTRLVHYEE------DR---------------- 478 (1021)
T ss_pred HHHHhCCCCCEEEEEECccCccc--------cH-HHHHHHHHHHHhCCCceEEeCC------Cc----------------
Confidence 99999997 7999999999731 33 3478899999999985443221 00
Q ss_pred hcCcCCCCCcceeeeccccCCCCHHHHHHHHHHHHh--cCCCEEEeeeccCCCchHHHHHHHHHHHHHcCCCeeEEEEEc
Q 042396 359 SEFPGNQNLRIGIGLESHFSTPNIPYMRASIDTLGA--TGLPIWLTEVDVQSSPNQAQYLEQILREAHAHPKVQGIVVWA 436 (472)
Q Consensus 359 ~~~~~~~G~~DgIG~Q~H~~~p~~~~~~~~l~~~a~--~g~pi~iTE~dv~~~~~qA~~~~~~~~~~~s~p~v~gi~~Wg 436 (472)
. ....|.+|. + .+.... +..++. .++|+.++|+.=.... ..--++++..+..++|.+.|-.+|.
T Consensus 479 -~----~~~~Dv~~~---~-Y~~~~~----~~~~~~~~~~kP~i~~Ey~hamgn-~~g~~~~yw~~~~~~p~l~GgfiW~ 544 (1021)
T PRK10340 479 -D----AEVVDVIST---M-YTRVEL----MNEFGEYPHPKPRILCEYAHAMGN-GPGGLTEYQNVFYKHDCIQGHYVWE 544 (1021)
T ss_pred -C----ccccceecc---c-cCCHHH----HHHHHhCCCCCcEEEEchHhccCC-CCCCHHHHHHHHHhCCceeEEeeee
Confidence 0 122266663 1 133332 333433 3699999998632210 0011344455667899999999999
Q ss_pred eecC-------CC------------CCc------cccccCCCCcchHHHHHHHHH
Q 042396 437 AWKP-------SG------------CYR------MCLTDNNFKNLATGDVVDKLL 466 (472)
Q Consensus 437 ~w~~-------~~------------~~~------~~L~d~d~~pKPa~~~~~~li 466 (472)
+.|. .| .++ -||++.|.+|||++..++++.
T Consensus 545 ~~D~~~~~~~~~G~~~~~ygGd~g~~p~~~~f~~~Glv~~dr~p~p~~~e~k~~~ 599 (1021)
T PRK10340 545 WCDHGIQAQDDNGNVWYKYGGDYGDYPNNYNFCIDGLIYPDQTPGPGLKEYKQVI 599 (1021)
T ss_pred cCcccccccCCCCCEEEEECCCCCCCCCCcCcccceeECCCCCCChhHHHHHHhc
Confidence 7662 11 111 289999999999999998875
No 30
>PLN03059 beta-galactosidase; Provisional
Probab=97.64 E-value=0.00051 Score=76.06 Aligned_cols=148 Identities=14% Similarity=0.149 Sum_probs=110.1
Q ss_pred cceEEeecCCCCCCHHHHHHH----HccccceeeCCCCCCcccccCCCCCCcc---hHHHHHHHHHhCCcEEEEe--Ee-
Q 042396 182 FPFGCAINKNILTNTAYQNWF----TSRFKVTAFEDEMKWYSTEASPGREDYS---ASDAMLQFAKNHNIAVRGH--NI- 251 (472)
Q Consensus 182 f~fG~av~~~~~~~~~~~~~~----~~~fn~vt~en~~kW~~~ep~~g~~~~~---~~D~~v~~a~~~gi~vrGH--~l- 251 (472)
+.+..++|...+..+.+++.+ +.+||.|.. =.-|..-||++|+|||+ ...+.++.|++.||.|.-. +-
T Consensus 45 ~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~t--YV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYI 122 (840)
T PLN03059 45 ILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQT--YVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYI 122 (840)
T ss_pred EEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEE--EecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcce
Confidence 467888888776655555554 458999976 68999999999999997 4677999999999987422 22
Q ss_pred --ecCCCCCCCcccCCC-------CHHHHHHHHHHHHHHHhhhc---------CCceEEEEeeccCccccccccc--cCc
Q 042396 252 --FWDDPQYQPGWVNSL-------SPSDLSKAADKRINSVTSRY---------KGQVIAWDVVNENLHFSFFESK--LGQ 311 (472)
Q Consensus 252 --vW~~~~~~P~W~~~~-------~~~~~~~~~~~~i~~v~~ry---------~g~i~~WDVvNE~~~~~~~~~~--~G~ 311 (472)
=|.. +..|.|+... +.+..++++++|+..++.+. +|.|....|=||- +++.... -+.
T Consensus 123 cAEw~~-GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEY--Gs~~~~~~~~d~ 199 (840)
T PLN03059 123 CAEWNF-GGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEY--GPVEWEIGAPGK 199 (840)
T ss_pred eeeecC-CCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccc--cceecccCcchH
Confidence 2554 3689998642 24567788888888887765 4689999999994 2322211 234
Q ss_pred hHHHHHHHHHHhhCCCCeEEEec
Q 042396 312 NASGVFFNRVHSLDGATTLFMND 334 (472)
Q Consensus 312 ~~~~~af~~Ar~~dP~a~L~~Nd 334 (472)
+|+...-+.|++..-++.|+..|
T Consensus 200 ~Yl~~l~~~~~~~Gi~VPl~t~d 222 (840)
T PLN03059 200 AYTKWAADMAVKLGTGVPWVMCK 222 (840)
T ss_pred HHHHHHHHHHHHcCCCcceEECC
Confidence 79999999999998889998776
No 31
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=97.64 E-value=5e-05 Score=61.57 Aligned_cols=53 Identities=15% Similarity=0.280 Sum_probs=32.0
Q ss_pred HhhhcCC--ceEEEEeecc-Ccccc-----ccccccC---chHHHHHHHHHHhhCCCCeEEEec
Q 042396 282 VTSRYKG--QVIAWDVVNE-NLHFS-----FFESKLG---QNASGVFFNRVHSLDGATTLFMND 334 (472)
Q Consensus 282 v~~ry~g--~i~~WDVvNE-~~~~~-----~~~~~~G---~~~~~~af~~Ar~~dP~a~L~~Nd 334 (472)
++++|+. +|.+|||+|| |.... .+.+... .++++++|+++|++||+..|..+-
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g~ 64 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSGF 64 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--B
T ss_pred CchhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEeec
Confidence 4677775 8999999999 54111 1111111 146899999999999999998763
No 32
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=97.18 E-value=0.05 Score=57.38 Aligned_cols=90 Identities=12% Similarity=0.199 Sum_probs=68.2
Q ss_pred cccceeeCCCCCCcccccCC---CCCCcchH---HHHHHHHHhCCcEEEEeEeecCCCCCCCcccCC----CCHHHHHHH
Q 042396 205 RFKVTAFEDEMKWYSTEASP---GREDYSAS---DAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVNS----LSPSDLSKA 274 (472)
Q Consensus 205 ~fn~vt~en~~kW~~~ep~~---g~~~~~~~---D~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~~~----~~~~~~~~~ 274 (472)
++++-++ .+.|..+-|.- +..|-+.. -.+++-+.+|||+..--..-|. +|.++.. +=.+++.+.
T Consensus 104 gv~afRF--SIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwD----lPq~LeDeYgGwLn~~ived 177 (524)
T KOG0626|consen 104 GVDAFRF--SISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWD----LPQALEDEYGGWLNPEIVED 177 (524)
T ss_pred CCCeEEE--EeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCC----CCHHHHHHhccccCHHHHHH
Confidence 6667666 89999999853 23555443 4589999999999864332343 7887764 123566778
Q ss_pred HHHHHHHHhhhcCCceEEEEeeccCc
Q 042396 275 ADKRINSVTSRYKGQVIAWDVVNENL 300 (472)
Q Consensus 275 ~~~~i~~v~~ry~g~i~~WDVvNE~~ 300 (472)
+++|.+-...+|++||..|=-.|||.
T Consensus 178 F~~yA~~CF~~fGDrVK~WiT~NEP~ 203 (524)
T KOG0626|consen 178 FRDYADLCFQEFGDRVKHWITFNEPN 203 (524)
T ss_pred HHHHHHHHHHHhcccceeeEEecccc
Confidence 99999999999999999999999996
No 33
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.07 E-value=0.0017 Score=70.86 Aligned_cols=116 Identities=16% Similarity=0.245 Sum_probs=85.8
Q ss_pred CCcceEEeecCCCCCCH----HHHHHHHccccceeeCCCCCCcccccCCCCCCcchHHHH-HHHHHhCCcEEEEeEeecC
Q 042396 180 LRFPFGCAINKNILTNT----AYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAM-LQFAKNHNIAVRGHNIFWD 254 (472)
Q Consensus 180 ~~f~fG~av~~~~~~~~----~~~~~~~~~fn~vt~en~~kW~~~ep~~g~~~~~~~D~~-v~~a~~~gi~vrGH~lvW~ 254 (472)
.-+.+|.+.++..+... +.+.+-..++|.|+.. .+-|..+||++|+|+|+..|.. ++.|.+.|+.+.--+- +
T Consensus 14 ~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig-~faW~~~eP~eG~fdf~~~D~~~l~~a~~~Gl~vil~t~--P 90 (673)
T COG1874 14 RILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIG-YFAWNLHEPEEGKFDFTWLDEIFLERAYKAGLYVILRTG--P 90 (673)
T ss_pred eeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEee-eEEeeccCccccccCcccchHHHHHHHHhcCceEEEecC--C
Confidence 34678999999877653 3444445799999983 7999999999999999999999 9999999998864330 0
Q ss_pred CCCCCCcccCC------------------------CCHHHHHHHHHHHHHHHhhh-cCC--ceEEEEeeccC
Q 042396 255 DPQYQPGWVNS------------------------LSPSDLSKAADKRINSVTSR-YKG--QVIAWDVVNEN 299 (472)
Q Consensus 255 ~~~~~P~W~~~------------------------~~~~~~~~~~~~~i~~v~~r-y~g--~i~~WDVvNE~ 299 (472)
+ ...|.|+.. .+....++.+...++.++.| |+. -|..|.|=||=
T Consensus 91 ~-g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY 161 (673)
T COG1874 91 T-GAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEY 161 (673)
T ss_pred C-CCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCcc
Confidence 1 234555532 01124566777777888889 875 79999999974
No 34
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=96.87 E-value=0.07 Score=62.00 Aligned_cols=213 Identities=13% Similarity=0.138 Sum_probs=125.9
Q ss_pred HccccceeeCCCCCCcccccCCCCCCcchHHHHHHHHHhCCcEEEEeEeec-CCCCCCC-cccCCCCHHHHHHHHHHHHH
Q 042396 203 TSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHNIAVRGHNIFW-DDPQYQP-GWVNSLSPSDLSKAADKRIN 280 (472)
Q Consensus 203 ~~~fn~vt~en~~kW~~~ep~~g~~~~~~~D~~v~~a~~~gi~vrGH~lvW-~~~~~~P-~W~~~~~~~~~~~~~~~~i~ 280 (472)
..+||+|+. .. +-..+++++.|.+.||-|--=.-++ |. ..| .++ .+.++..+.+.+.++
T Consensus 382 ~~g~NaVR~--sH-------------yP~~p~fydlcDe~GilV~dE~~~e~hg--~~~~~~~--~~dp~~~~~~~~~~~ 442 (1027)
T PRK09525 382 QHNFNAVRC--SH-------------YPNHPLWYELCDRYGLYVVDEANIETHG--MVPMNRL--SDDPRWLPAMSERVT 442 (1027)
T ss_pred HCCCCEEEe--cC-------------CCCCHHHHHHHHHcCCEEEEecCccccC--CccccCC--CCCHHHHHHHHHHHH
Confidence 358999987 11 1234678999999999765332211 11 111 111 123456677888899
Q ss_pred HHhhhcCC--ceEEEEeeccCccccccccccCchHHHHHHHHHHhhCCCCeEEEeccCCcccCCCCCCCHHHHHHHHHHH
Q 042396 281 SVTSRYKG--QVIAWDVVNENLHFSFFESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLRQI 358 (472)
Q Consensus 281 ~v~~ry~g--~i~~WDVvNE~~~~~~~~~~~G~~~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~~~~l 358 (472)
+++.|.+. .|..|-+-||.-. | .....+++++|+.||.-.+-+.+-. .. . .+.+.+..+
T Consensus 443 ~mV~RdrNHPSIi~WSlgNE~~~--------g-~~~~~l~~~~k~~DptRpV~y~~~~-~~--~-------~~~Dv~~~m 503 (1027)
T PRK09525 443 RMVQRDRNHPSIIIWSLGNESGH--------G-ANHDALYRWIKSNDPSRPVQYEGGG-AD--T-------AATDIICPM 503 (1027)
T ss_pred HHHHhCCCCCEEEEEeCccCCCc--------C-hhHHHHHHHHHhhCCCCcEEECCCC-CC--C-------CccccccCC
Confidence 99999997 7999999999731 2 2357788999999998666554210 00 0 000111000
Q ss_pred hcCcCCCCCcceeeeccccCCCCHHHHHHHHHHHHhc---CCCEEEeeeccCCCchHHHHHHHHHHHHHcCCCeeEEEEE
Q 042396 359 SEFPGNQNLRIGIGLESHFSTPNIPYMRASIDTLGAT---GLPIWLTEVDVQSSPNQAQYLEQILREAHAHPKVQGIVVW 435 (472)
Q Consensus 359 ~~~~~~~G~~DgIG~Q~H~~~p~~~~~~~~l~~~a~~---g~pi~iTE~dv~~~~~qA~~~~~~~~~~~s~p~v~gi~~W 435 (472)
.. . +++ .+.....+ ...|+.+... ++|+.++|+.=..+ ..---++++..++.++|.+.|=.+|
T Consensus 504 y~----~--~~~--~~~~~~~~-----~~~~~~~~~~~~~~kP~i~cEY~Hamg-n~~g~l~~yw~~~~~~~~~~GgfIW 569 (1027)
T PRK09525 504 YA----R--VDE--DQPFPAVP-----KWSIKKWISLPGETRPLILCEYAHAMG-NSLGGFAKYWQAFRQYPRLQGGFIW 569 (1027)
T ss_pred CC----C--ccc--cccccccc-----hHHHHHHHhcCCCCCCEEEEechhccc-CcCccHHHHHHHHhcCCCeeEEeeE
Confidence 00 0 010 00000001 1224444432 69999999962221 1112456777777799999999999
Q ss_pred ceecC-------CC---------C---C------ccccccCCCCcchHHHHHHHHHH
Q 042396 436 AAWKP-------SG---------C---Y------RMCLTDNNFKNLATGDVVDKLLH 467 (472)
Q Consensus 436 g~w~~-------~~---------~---~------~~~L~d~d~~pKPa~~~~~~li~ 467 (472)
.+-|. .| + + .-||+..|.+|+|.+..+++++.
T Consensus 570 ~w~Dqg~~~~~~~G~~~~~YGGDfgd~p~d~nFc~dGlv~~dR~p~p~~~E~K~v~q 626 (1027)
T PRK09525 570 DWVDQGLTKYDENGNPWWAYGGDFGDTPNDRQFCMNGLVFPDRTPHPALYEAKHAQQ 626 (1027)
T ss_pred eccCcceeeECCCCCEEEEECCcCCCCCCCCCceeceeECCCCCCCccHHHHHhhcC
Confidence 86432 11 1 1 13799999999999999998863
No 35
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.80 E-value=0.076 Score=54.20 Aligned_cols=215 Identities=17% Similarity=0.177 Sum_probs=99.5
Q ss_pred ccccCCCCCCcchH---HHHHHHHHhCCcEEEEeEeecCCCCCCCcccCCC------------CHHHHHHHHHHHHHHHh
Q 042396 219 STEASPGREDYSAS---DAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVNSL------------SPSDLSKAADKRINSVT 283 (472)
Q Consensus 219 ~~ep~~g~~~~~~~---D~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~~~~------------~~~~~~~~~~~~i~~v~ 283 (472)
...+..|.|||+.- -.+++.|+++|+... -...|. -|-|+..- -.+.-.+.+.+|+.+|+
T Consensus 90 ~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f-~aFSNS----PP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv 164 (384)
T PF14587_consen 90 SFLPADGSYDWDADAGQRWFLKAAKERGVNIF-EAFSNS----PPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVV 164 (384)
T ss_dssp -SB-TTS-B-TTSSHHHHHHHHHHHHTT---E-EEE-SS----S-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHH
T ss_pred cccCCCCCcCCCCCHHHHHHHHHHHHcCCCeE-EEeecC----CCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHH
Confidence 34567899999752 238889999999852 122221 34455320 02345788899999999
Q ss_pred hhcCC---ceEEEEeeccCcccccccc--ccCc--------hHHHHHHHHHHhhCCCCeEEEeccCCcccCCCCCCCHHH
Q 042396 284 SRYKG---QVIAWDVVNENLHFSFFES--KLGQ--------NASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAM 350 (472)
Q Consensus 284 ~ry~g---~i~~WDVvNE~~~~~~~~~--~~G~--------~~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~ 350 (472)
.+|+. .|.+-+-+|||.. .|.. .-|- +.++...+..++...++++.+.|-+.++.--........
T Consensus 165 ~~~~~~GI~f~~IsP~NEP~~--~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea~~~~~l~~~~~~~~~ 242 (384)
T PF14587_consen 165 KHYKKWGINFDYISPFNEPQW--NWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEAGDWEYLYKTDKNDWG 242 (384)
T ss_dssp HHHHCTT--EEEEE--S-TTS---GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEESSGGGGS---S-TTS
T ss_pred HHHHhcCCccceeCCcCCCCC--CCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecchhhHHHHhhccCCchh
Confidence 99854 7999999999963 3521 1121 234555556666788999999876544221110000000
Q ss_pred HHHHHHHHhcC-----cC-CCCCcceeeeccccCC-C--CHHHHHHHHHH-HHhc--CCCEEEeeeccCCCc--------
Q 042396 351 YLQKLRQISEF-----PG-NQNLRIGIGLESHFST-P--NIPYMRASIDT-LGAT--GLPIWLTEVDVQSSP-------- 410 (472)
Q Consensus 351 ~~~~~~~l~~~-----~~-~~G~~DgIG~Q~H~~~-p--~~~~~~~~l~~-~a~~--g~pi~iTE~dv~~~~-------- 410 (472)
.-..|..+-.. ++ -..++.-|.-++++.. | .+..+|+.|.. +... |+++|-||+-|-...
T Consensus 243 r~~~i~~ff~~~s~~yi~~l~~v~~~i~~HsYwt~~~~~~l~~~R~~~~~~~~~~~~~~~~wqtE~~il~~~~~~~~~~g 322 (384)
T PF14587_consen 243 RGNQIEAFFNPDSSTYIGDLPNVPNIISGHSYWTDSPWDDLRDIRKQLADKLDKYSPGLKYWQTEYCILGDNYEIIEGGG 322 (384)
T ss_dssp ---HHHHHHSTTSTT--TT-TTEEEEEEE--TT-SSSHHHHHHHHHHHHHHHHTTSS--EEEE----S----TTT-SSS-
T ss_pred hhhhHHhhcCCCchhhhhccccchhheeecccccCCCHHHHHHHHHHHHHHHHhhCcCCceeeeeeeeccCCcccccCCC
Confidence 11223333321 11 0122366666666655 3 23345555543 3445 899999999876430
Q ss_pred -------hHHHHHHHHHHHHHcCCCeeEEEEEceecC
Q 042396 411 -------NQAQYLEQILREAHAHPKVQGIVVWAAWKP 440 (472)
Q Consensus 411 -------~qA~~~~~~~~~~~s~p~v~gi~~Wg~w~~ 440 (472)
.-|-|+.+++..=+-..++.+-.||....+
T Consensus 323 ~~~~~~m~~aLy~arviH~DL~~anassW~wW~a~~~ 359 (384)
T PF14587_consen 323 YDRDLGMDTALYVARVIHNDLTYANASSWQWWTAISP 359 (384)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHTS--SEEEEEESEES
T ss_pred cccchhHHHHHHHHHHHHhhhhhcccchhHHHHHhcc
Confidence 225566666655555678888888886544
No 36
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=95.71 E-value=0.032 Score=56.74 Aligned_cols=220 Identities=18% Similarity=0.181 Sum_probs=129.3
Q ss_pred CCCCCcchHHHHHHHHHhCCcEEEEeEeecCCCCCCC-cccCCCCHH-HHHHHHHHHHHHHhhhcCC-ceEEE--Eeecc
Q 042396 224 PGREDYSASDAMLQFAKNHNIAVRGHNIFWDDPQYQP-GWVNSLSPS-DLSKAADKRINSVTSRYKG-QVIAW--DVVNE 298 (472)
Q Consensus 224 ~g~~~~~~~D~~v~~a~~~gi~vrGH~lvW~~~~~~P-~W~~~~~~~-~~~~~~~~~i~~v~~ry~g-~i~~W--DVvNE 298 (472)
.=-|+|+..|++++-..+.|+++.=--|.|+.....- .|-.+.+++ ...+.+..+|..++.||+- .|.-| .++||
T Consensus 34 ~~~~~~t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~~~fl~h~~~~vg~e~v~kw~f~~~~~ 113 (428)
T COG3664 34 KLFYPFTYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLIAAFLKHVIRRVGVEFVRKWPFYSPNE 113 (428)
T ss_pred cccCChHHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHHHHHHHHHHHHhChhheeecceeecCC
Confidence 4467889999999999998876543346677542111 354443333 4778888888888888874 35555 89999
Q ss_pred CccccccccccCchHHHHHHHHHHhhCCCCeEEEeccCCcccCCCCCCCHHHHHHHHHHHhcCcCCCCCcceeeeccccC
Q 042396 299 NLHFSFFESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLRQISEFPGNQNLRIGIGLESHFS 378 (472)
Q Consensus 299 ~~~~~~~~~~~G~~~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~DgIG~Q~H~~ 378 (472)
|+.. .--.+|.+.-+..||+.+|...|-=. .++ +. ...+.+....+.-...++.--|+++ +.
T Consensus 114 pn~~-----ad~~eyfk~y~~~a~~~~p~i~vg~~-w~~-e~-------l~~~~k~~d~idfvt~~a~~~~av~----~~ 175 (428)
T COG3664 114 PNLL-----ADKQEYFKLYDATARQRAPSIQVGGS-WNT-ER-------LHEFLKKADEIDFVTELANSVDAVD----FS 175 (428)
T ss_pred CCcc-----cchHHHHHHHHhhhhccCcceeeccc-cCc-HH-------HhhhhhccCcccceeeccccccccc----cc
Confidence 9632 12347888889999999999888520 111 00 1111110000000000000003332 22
Q ss_pred CCC------------HHHHHHHHHHHH--hcCCCEEEeeeccCCCc--------hHHHHHHHHHHHHHcCCCeeEEEEEc
Q 042396 379 TPN------------IPYMRASIDTLG--ATGLPIWLTEVDVQSSP--------NQAQYLEQILREAHAHPKVQGIVVWA 436 (472)
Q Consensus 379 ~p~------------~~~~~~~l~~~a--~~g~pi~iTE~dv~~~~--------~qA~~~~~~~~~~~s~p~v~gi~~Wg 436 (472)
.|+ ++.++...+.+. .+|+|..+||..-.+.+ ..|.++-+.|+.+ .+-|.++..|+
T Consensus 176 ~~~~~~~~l~~~~~~l~~~r~~~d~i~~~~~~~pl~~~~wntlt~~~~~~n~sy~raa~i~~~Lr~~--g~~v~a~~yW~ 253 (428)
T COG3664 176 TPGAEEVKLSELKRTLEDLRGLKDLIQHHSLGLPLLLTNWNTLTGPREPTNGSYVRAAYIMRLLREA--GSPVDAFGYWT 253 (428)
T ss_pred CCCchhhhhhhhhhhhhHHHHHHHHHHhccCCCcceeecccccCCCccccCceeehHHHHHHHHHhc--CChhhhhhhhh
Confidence 221 233444445443 45789999998877653 3455555554433 35689999999
Q ss_pred eecCC---CC------CccccccCCCCcchHHHHHH
Q 042396 437 AWKPS---GC------YRMCLTDNNFKNLATGDVVD 463 (472)
Q Consensus 437 ~w~~~---~~------~~~~L~d~d~~pKPa~~~~~ 463 (472)
..+.. |- ..++|++.-.-.||||-+..
T Consensus 254 ~sdl~e~~g~~~~~~~~gfel~~~~~~rrpa~~~~l 289 (428)
T COG3664 254 NSDLHEEHGPPEAPFVGGFELFAPYGGRRPAWMAAL 289 (428)
T ss_pred cccccccCCCcccccccceeeecccccchhHHHHHH
Confidence 75532 11 24788888888999988653
No 37
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=95.17 E-value=0.18 Score=53.95 Aligned_cols=210 Identities=15% Similarity=0.159 Sum_probs=113.3
Q ss_pred HHHHHHh--CCcEEEEeEeecCCCCCCCcccCCC---------C---HHHHHHHHHHHHHHHhhhcCC---ceEEEEeec
Q 042396 235 MLQFAKN--HNIAVRGHNIFWDDPQYQPGWVNSL---------S---PSDLSKAADKRINSVTSRYKG---QVIAWDVVN 297 (472)
Q Consensus 235 ~v~~a~~--~gi~vrGH~lvW~~~~~~P~W~~~~---------~---~~~~~~~~~~~i~~v~~ry~g---~i~~WDVvN 297 (472)
+|..|.+ .+|++.+- -|. -|.|++.- . .++..+++.+|..+-+..|+. .|.+--+-|
T Consensus 158 ~ik~a~~~~~~lki~aS--pWS----pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QN 231 (496)
T PF02055_consen 158 LIKEALAINPNLKIFAS--PWS----PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQN 231 (496)
T ss_dssp HHHHHHHHHTT-EEEEE--ES-------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSS
T ss_pred HHHHHHHhCCCcEEEEe--cCC----CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccC
Confidence 4554443 34666553 475 58999641 1 245678888888888888875 688888999
Q ss_pred cCcccc----ccccc-cC----chHHHHHHH-HHHhhCC--CCeEEEeccCCcccCCCCCCCHHHHHHHHHHHhcCcCCC
Q 042396 298 ENLHFS----FFESK-LG----QNASGVFFN-RVHSLDG--ATTLFMNDYNTIEDSRDGKATPAMYLQKLRQISEFPGNQ 365 (472)
Q Consensus 298 E~~~~~----~~~~~-~G----~~~~~~af~-~Ar~~dP--~a~L~~Ndy~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (472)
||.... .|... .. .++++..+. ..++..+ ++||++.|-|-... ..|... +++...++
T Consensus 232 EP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~--------~~~~~~---il~d~~A~ 300 (496)
T PF02055_consen 232 EPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNL--------PDYADT---ILNDPEAA 300 (496)
T ss_dssp SCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGT--------THHHHH---HHTSHHHH
T ss_pred CCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCccc--------chhhhh---hhcChhhH
Confidence 997532 23221 11 245665443 4556666 89999987653111 134322 22211002
Q ss_pred CCcceeeeccccCCCCHHHHHHHHHHHHh--cCCCEEEeeeccCCC---------c-hHHHHHHHHHHHHHcCCCeeEEE
Q 042396 366 NLRIGIGLESHFSTPNIPYMRASIDTLGA--TGLPIWLTEVDVQSS---------P-NQAQYLEQILREAHAHPKVQGIV 433 (472)
Q Consensus 366 G~~DgIG~Q~H~~~p~~~~~~~~l~~~a~--~g~pi~iTE~dv~~~---------~-~qA~~~~~~~~~~~s~p~v~gi~ 433 (472)
...||||+|.+-+.+.. ..|++... .++.|+.||--.... . ..++.|...+-..+.| .+.|.+
T Consensus 301 ~yv~GiA~HwY~g~~~~----~~l~~~h~~~P~k~l~~TE~~~g~~~~~~~~~~g~w~~~~~y~~~ii~~lnn-~~~gw~ 375 (496)
T PF02055_consen 301 KYVDGIAFHWYGGDPSP----QALDQVHNKFPDKFLLFTEACCGSWNWDTSVDLGSWDRAERYAHDIIGDLNN-WVSGWI 375 (496)
T ss_dssp TTEEEEEEEETTCS-HC----HHHHHHHHHSTTSEEEEEEEESS-STTS-SS-TTHHHHHHHHHHHHHHHHHT-TEEEEE
T ss_pred hheeEEEEECCCCCchh----hHHHHHHHHCCCcEEEeeccccCCCCcccccccccHHHHHHHHHHHHHHHHh-hceeee
Confidence 22399999444333322 23444432 368899999755332 1 3444444444445665 799999
Q ss_pred EEcee-cCCC---C-----CccccccCC---CCcchHHHHHHHHH
Q 042396 434 VWAAW-KPSG---C-----YRMCLTDNN---FKNLATGDVVDKLL 466 (472)
Q Consensus 434 ~Wg~w-~~~~---~-----~~~~L~d~d---~~pKPa~~~~~~li 466 (472)
.|.+. |..| + ..+.+.|.+ +...|.|..+..+-
T Consensus 376 ~WNl~LD~~GGP~~~~n~~d~~iivd~~~~~~~~~p~yY~~gHfS 420 (496)
T PF02055_consen 376 DWNLALDENGGPNWVGNFCDAPIIVDSDTGEFYKQPEYYAMGHFS 420 (496)
T ss_dssp EEESEBETTS---TT---B--SEEEEGGGTEEEE-HHHHHHHHHH
T ss_pred eeeeecCCCCCCcccCCCCCceeEEEcCCCeEEEcHHHHHHHHHh
Confidence 99974 3221 1 123344433 34578888887663
No 38
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=94.84 E-value=0.089 Score=54.53 Aligned_cols=218 Identities=15% Similarity=0.161 Sum_probs=136.1
Q ss_pred CcchHHHHHHHHHhCCcEEEEeEee-cCCCC---CCCcccCCCC------HHHHHHHHHHHHHHHhhhcCC--ceEEEEe
Q 042396 228 DYSASDAMLQFAKNHNIAVRGHNIF-WDDPQ---YQPGWVNSLS------PSDLSKAADKRINSVTSRYKG--QVIAWDV 295 (472)
Q Consensus 228 ~~~~~D~~v~~a~~~gi~vrGH~lv-W~~~~---~~P~W~~~~~------~~~~~~~~~~~i~~v~~ry~g--~i~~WDV 295 (472)
++..++.+++-|..++|++.=..++ |..-+ +.=.|.-.-+ .+..+.-.++||+.++.-||- -|-.|..
T Consensus 65 ~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l 144 (587)
T COG3934 65 NVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWAL 144 (587)
T ss_pred cHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHh
Confidence 4667899999999999998633332 22211 1223542211 245566679999999998886 6889999
Q ss_pred eccCccccccccccCc---hHHHHHHHHHHhhCCCCeEEEeccCCcccCCCCCCCHHHHHHHHHHHhcCcCCCCCcceee
Q 042396 296 VNENLHFSFFESKLGQ---NASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLRQISEFPGNQNLRIGIG 372 (472)
Q Consensus 296 vNE~~~~~~~~~~~G~---~~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~DgIG 372 (472)
-|||.-... ..+. ++....+.++|..||+-.+-.+|-.- -.+.- ++.. + ++..|-=+
T Consensus 145 ~Ne~lv~~p---~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~s-p~~~~---~pyN----~---------r~~vDya~ 204 (587)
T COG3934 145 RNEPLVEAP---ISVNNFWDWSGEMYAYIKWLDDGHLVSVGDPAS-PWPQY---APYN----A---------RFYVDYAA 204 (587)
T ss_pred cCCcccccc---CChhHHHHHHHHHHHHhhccCCCCeeecCCcCC-ccccc---CCcc----c---------ceeecccc
Confidence 999754221 1122 45688899999999998888776431 11110 1110 0 11112222
Q ss_pred eccccC----C-C----CHHHHHHHHHHHHhcC-CCEEEeeeccCCCc----hHHHHHHHHHHHHHcCCCeeEEEEEcee
Q 042396 373 LESHFS----T-P----NIPYMRASIDTLGATG-LPIWLTEVDVQSSP----NQAQYLEQILREAHAHPKVQGIVVWAAW 438 (472)
Q Consensus 373 ~Q~H~~----~-p----~~~~~~~~l~~~a~~g-~pi~iTE~dv~~~~----~qA~~~~~~~~~~~s~p~v~gi~~Wg~w 438 (472)
. |++ . | +.......|+-....| +|+-.-|++.++.- .||.++ .+++++.. +-.|-.+|-|-
T Consensus 205 ~--hLY~hyd~sl~~r~s~~yg~~~l~i~~~~g~~pV~leefGfsta~g~e~s~ayfi--w~~lal~~-ggdGaLiwcls 279 (587)
T COG3934 205 N--HLYRHYDTSLVSRVSTVYGKPYLDIPTIMGWQPVNLEEFGFSTAFGQENSPAYFI--WIRLALDT-GGDGALIWCLS 279 (587)
T ss_pred c--hhhhhccCChhheeeeeecchhhccchhcccceeeccccCCcccccccccchhhh--hhhhHHhh-cCCceEEEEec
Confidence 3 444 1 2 1123344677777889 99999999999871 454443 33335554 34567788763
Q ss_pred c--------CCCC----CccccccCCCCcchHHHHHHHHHHHhc
Q 042396 439 K--------PSGC----YRMCLTDNNFKNLATGDVVDKLLHEWG 470 (472)
Q Consensus 439 ~--------~~~~----~~~~L~d~d~~pKPa~~~~~~li~eW~ 470 (472)
+ +.++ -.+|+.+.|..+|-++..+..+..+|.
T Consensus 280 df~~gsdd~ey~w~p~el~fgiIradgpek~~a~~~~~fsn~~k 323 (587)
T COG3934 280 DFHLGSDDSEYTWGPMELEFGIIRADGPEKIDAMTLHIFSNNWK 323 (587)
T ss_pred CCccCCCCCCCccccccceeeeecCCCchhhhHHHHHHhccccc
Confidence 2 1122 269999999999999999999887663
No 39
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=94.66 E-value=0.38 Score=50.26 Aligned_cols=116 Identities=16% Similarity=0.204 Sum_probs=73.1
Q ss_pred HccccceeeCCCCCCcccccC----CCCC---CcchHHHHHHHHHhCCcEEEEeEeecCCC-----CCCCcccCC-CC-H
Q 042396 203 TSRFKVTAFEDEMKWYSTEAS----PGRE---DYSASDAMLQFAKNHNIAVRGHNIFWDDP-----QYQPGWVNS-LS-P 268 (472)
Q Consensus 203 ~~~fn~vt~en~~kW~~~ep~----~g~~---~~~~~D~~v~~a~~~gi~vrGH~lvW~~~-----~~~P~W~~~-~~-~ 268 (472)
..+||.|++ ++-|..+++. |... ....+|++|+||++.||.|. |-+|.. .....|... .. .
T Consensus 84 ~~G~n~VRi--Pi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~---iD~H~~~~~~~~~~~s~~~~~~~~~ 158 (407)
T COG2730 84 SAGFNAVRI--PIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVL---IDLHGYPGGNNGHEHSGYTSDYKEE 158 (407)
T ss_pred HcCCcEEEc--ccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEE---EEecccCCCCCCcCccccccccccc
Confidence 579999999 6776555543 2222 11268999999999999984 334431 122334322 11 3
Q ss_pred HHHHHHHHHHHHHHhhhcCC--ceEEEEeeccCcc---ccccccccCchHHHHHHHHHH-hhCCCC
Q 042396 269 SDLSKAADKRINSVTSRYKG--QVIAWDVVNENLH---FSFFESKLGQNASGVFFNRVH-SLDGAT 328 (472)
Q Consensus 269 ~~~~~~~~~~i~~v~~ry~g--~i~~WDVvNE~~~---~~~~~~~~G~~~~~~af~~Ar-~~dP~a 328 (472)
++..++..+..+.++.||+. .|...|++|||.. ...|... ...|+..+| +....+
T Consensus 159 ~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~~~~~~~w~~~-----~~~A~~~v~~~i~~~~ 219 (407)
T COG2730 159 NENVEATIDIWKFIANRFKNYDTVIGFELINEPNGIVTSETWNGG-----DDEAYDVVRNAILSNA 219 (407)
T ss_pred chhHHHHHHHHHHHHHhccCCCceeeeeeecCCcccCCccccccc-----hHHHHHHHHhhhhhcC
Confidence 44567788888899999997 5778899999973 2333321 266676664 334443
No 40
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=94.43 E-value=0.41 Score=48.00 Aligned_cols=182 Identities=15% Similarity=0.124 Sum_probs=100.4
Q ss_pred HHhCCcEEEEeEeecCCCCCCCcccCCC---C-------HHHHHHHHHHHHHHHhhhcCC---ceEEEEeeccCccc--c
Q 042396 239 AKNHNIAVRGHNIFWDDPQYQPGWVNSL---S-------PSDLSKAADKRINSVTSRYKG---QVIAWDVVNENLHF--S 303 (472)
Q Consensus 239 a~~~gi~vrGH~lvW~~~~~~P~W~~~~---~-------~~~~~~~~~~~i~~v~~ry~g---~i~~WDVvNE~~~~--~ 303 (472)
+..+|+.|-..+ |. -|.|+..- + +.+-.+.+.+|+.+.+..|+. .+++--|=|||.-. .
T Consensus 111 ~in~g~ivfASP--Ws----pPa~Mktt~~~ngg~~g~Lk~e~Ya~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~p~~ 184 (433)
T COG5520 111 AINPGMIVFASP--WS----PPASMKTTNNRNGGNAGRLKYEKYADYADYLNDFVLEMKNNGVNLYALSVQNEPDYAPTY 184 (433)
T ss_pred hcCCCcEEEecC--CC----CchhhhhccCcCCccccccchhHhHHHHHHHHHHHHHHHhCCCceeEEeeccCCcccCCC
Confidence 456666665432 43 47788531 1 123356778888888877765 68899999999743 2
Q ss_pred ccccccCchHHHHHHHHHHhhCCCCeEEEeccCCcccCCCCCCCHHHHHHHHHHHhcCcCCCCCcceeeeccccCCCCHH
Q 042396 304 FFESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLRQISEFPGNQNLRIGIGLESHFSTPNIP 383 (472)
Q Consensus 304 ~~~~~~G~~~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~DgIG~Q~H~~~p~~~ 383 (472)
.|.--+..|.+.-+-+.++-..-.+++++-|-.- ..+. +- +-++..+.+..-.||+|. |.+.....
T Consensus 185 d~~~wtpQe~~rF~~qyl~si~~~~rV~~pes~~-~~~~--------~~---dp~lnDp~a~a~~~ilg~--H~Ygg~v~ 250 (433)
T COG5520 185 DWCWWTPQEELRFMRQYLASINAEMRVIIPESFK-DLPN--------MS---DPILNDPKALANMDILGT--HLYGGQVS 250 (433)
T ss_pred CcccccHHHHHHHHHHhhhhhccccEEecchhcc-cccc--------cc---cccccCHhHhcccceeEe--eecccccc
Confidence 2222233445555555555556678888765432 1111 00 001111100111289999 77653332
Q ss_pred HHHHHHHHHHhcCCCEEEeeeccCCC-c---h-HHHHHHHHHHHHHcCCCeeEEEEEceecC
Q 042396 384 YMRASIDTLGATGLPIWLTEVDVQSS-P---N-QAQYLEQILREAHAHPKVQGIVVWAAWKP 440 (472)
Q Consensus 384 ~~~~~l~~~a~~g~pi~iTE~dv~~~-~---~-qA~~~~~~~~~~~s~p~v~gi~~Wg~w~~ 440 (472)
+.-..|.+....|+.||.||.-.... + . .+-.+..-+-.+.-..++.|+.||.+...
T Consensus 251 ~~p~~lak~~~~gKdlwmte~y~~esd~~s~dr~~~~~~~hi~~gm~~gg~~ayv~W~i~~~ 312 (433)
T COG5520 251 DQPYPLAKQKPAGKDLWMTECYPPESDPNSADREALHVALHIHIGMTEGGFQAYVWWNIRLD 312 (433)
T ss_pred cchhhHhhCCCcCCceEEeecccCCCCCCcchHHHHHHHHHHHhhccccCccEEEEEEEeec
Confidence 22233444445599999999877654 2 1 12223333333444468999999998654
No 41
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=94.07 E-value=0.29 Score=48.64 Aligned_cols=174 Identities=16% Similarity=0.181 Sum_probs=87.2
Q ss_pred chHHHHHHHHHhCCcEEEEeEeecCCCCCCC-cccCC---CCHHHHHHHHHHHHHHHhhhcCCce-EEEEeeccCccccc
Q 042396 230 SASDAMLQFAKNHNIAVRGHNIFWDDPQYQP-GWVNS---LSPSDLSKAADKRINSVTSRYKGQV-IAWDVVNENLHFSF 304 (472)
Q Consensus 230 ~~~D~~v~~a~~~gi~vrGH~lvW~~~~~~P-~W~~~---~~~~~~~~~~~~~i~~v~~ry~g~i-~~WDVvNE~~~~~~ 304 (472)
+.+|++|+.|.++||.+- -+++|+.+ ..| .|-.. +++ +..+.|++-|+.||+..- .-|.+-||-
T Consensus 88 ~~~d~~i~~a~~~Gi~~~-lv~~wg~~-~~~~~Wg~~~~~m~~----e~~~~Y~~yv~~Ry~~~~NviW~l~gd~----- 156 (289)
T PF13204_consen 88 DHLDRRIEKANELGIEAA-LVPFWGCP-YVPGTWGFGPNIMPP----ENAERYGRYVVARYGAYPNVIWILGGDY----- 156 (289)
T ss_dssp HHHHHHHHHHHHTT-EEE-EESS-HHH-HH-------TTSS-H----HHHHHHHHHHHHHHTT-SSEEEEEESSS-----
T ss_pred HHHHHHHHHHHHCCCeEE-EEEEECCc-cccccccccccCCCH----HHHHHHHHHHHHHHhcCCCCEEEecCcc-----
Confidence 358999999999999994 67788432 223 46542 333 456799999999999852 459999997
Q ss_pred cccccCchHHHHHHHHHHhhCCCCeEEEeccCCcccCCCCCCCHHHHHHHHHHHhcCcCCCCCcceeeecc-ccCC-C-C
Q 042396 305 FESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLRQISEFPGNQNLRIGIGLES-HFST-P-N 381 (472)
Q Consensus 305 ~~~~~G~~~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~DgIG~Q~-H~~~-p-~ 381 (472)
+....-.++...+.+.+|+.||...+-+...+. . ..+.. +.+ +.-.|-+.+|+ |-.. . .
T Consensus 157 ~~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~-~------~~~~~-------~~~----~~Wldf~~~Qsgh~~~~~~~ 218 (289)
T PF13204_consen 157 FDTEKTRADWDAMARGIKENDPYQLITIHPCGR-T------SSPDW-------FHD----EPWLDFNMYQSGHNRYDQDN 218 (289)
T ss_dssp --TTSSHHHHHHHHHHHHHH--SS-EEEEE-BT-E------BTHHH-------HTT-----TT--SEEEB--S--TT--T
T ss_pred CCCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCC-C------Ccchh-------hcC----CCcceEEEeecCCCcccchH
Confidence 222233478889999999999988333333221 0 01222 222 32237777885 5332 2 2
Q ss_pred HHHHHHHHHHHH-hcCCCEEEeeeccCCCc---------hH-HHHHHHHHHHHHcCCCeeEEEE
Q 042396 382 IPYMRASIDTLG-ATGLPIWLTEVDVQSSP---------NQ-AQYLEQILREAHAHPKVQGIVV 434 (472)
Q Consensus 382 ~~~~~~~l~~~a-~~g~pi~iTE~dv~~~~---------~q-A~~~~~~~~~~~s~p~v~gi~~ 434 (472)
...+.. -..++ ...+||...|.-.-..+ .. .+.-+++...+++-. -.|++.
T Consensus 219 ~~~~~~-~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa-~aG~tY 280 (289)
T PF13204_consen 219 WYYLPE-EFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA-YAGHTY 280 (289)
T ss_dssp HHHH---HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT---SEEEE
T ss_pred HHHHhh-hhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC-CccccC
Confidence 222211 12333 45799999997654331 12 245566777777743 236654
No 42
>PF15425 DUF4627: Domain of unknown function (DUF4627); PDB: 3SEE_A.
Probab=93.27 E-value=2.5 Score=38.43 Aligned_cols=123 Identities=19% Similarity=0.262 Sum_probs=58.9
Q ss_pred CCCceeeCCCCCCC------------CCCeeEecc-----eEEE--EecC--CCcee--------------eeeEEE--e
Q 042396 10 YGGGIIKNPELSHG------------LKGWSAFGN-----AKIE--QRES--GGNNS--------------CISQKV--Y 52 (472)
Q Consensus 10 ~~~~li~n~~FE~g------------~~gW~~~g~-----~~~~--~~~~--~G~~~--------------g~~~~~--~ 52 (472)
.+.|||+|++|... ++-|....+ .+++ .+.+ .|+.. -+.|.+ .
T Consensus 4 ~AQnLIkN~~F~t~Lt~e~~~as~~T~~~Wfavnde~~G~Tt~a~~~tnD~k~~na~~is~~~~~tsWykafLaQr~~~g 83 (212)
T PF15425_consen 4 SAQNLIKNGDFDTPLTNENTTASNTTFGKWFAVNDEWDGATTIAWINTNDQKTGNAWGISSWDKQTSWYKAFLAQRYTNG 83 (212)
T ss_dssp ------SSTT--S----B-SSGGGS-TTSEEEEE-S-TTS-EEEEEE-S-TTS-EEEEETT-SS---TTTEEEEEEE-S-
T ss_pred chhhhhhcCccCcchhccccCcCcccccceEEEecccCCceEeeeeccCcccccceEEEeecccCcHHHHHHHHHHHhcc
Confidence 46799999999642 356887532 2333 1111 33322 445555 3
Q ss_pred eecCCEEEEEEEEEecCCCccEEEEEE--E-CCe----EEEe----------------eeEEEeCCCeEEEEeeEeeCCC
Q 042396 53 LEKNKFYTLSAWIQVSEGAAPVTAVFK--T-ITG----FKHA----------------GAAVAESKCWSMLKGGLSPDAS 109 (472)
Q Consensus 53 l~~G~~Y~~SawVk~~~g~~~~~~~~~--~-~~~----~~~~----------------~~~~v~~~~W~~l~g~~t~~~~ 109 (472)
+++ ..|++|+|.|.....+++++.++ . ||. +... .-..-..|.|+++...|-+...
T Consensus 84 ae~-~mYtLsF~AkA~t~g~qv~V~Irl~~~ngK~~~~Ffmr~~~d~~sqpn~s~a~y~~~ikkAgkWtkv~~~fdfgkv 162 (212)
T PF15425_consen 84 AEK-GMYTLSFDAKADTNGTQVHVFIRLHNDNGKDNQRFFMRRDYDAQSQPNQSDAQYNFKIKKAGKWTKVSVYFDFGKV 162 (212)
T ss_dssp --S-SEEEEEEEEEESSTT-EEEEEEE-B-TTS-B---EEEETT--TTT-TTSBSS-EEEE--STT--EEEEEEEEEEEE
T ss_pred ccc-ceEEEEEEeecccCCCcEEEEEEEecCCCccceeEEEEeccccccCccchhhhhhhccccCCceEEEEEEeehhHH
Confidence 444 47999999999875556665554 2 331 1100 1123346899999988754210
Q ss_pred -------------------------ccEEEEEEeCCCceeEEEcccccc
Q 042396 110 -------------------------GFAELYFESKNTSVDIWVDSISLQ 133 (472)
Q Consensus 110 -------------------------~~~~iy~e~~~~~~~~yvDdv~l~ 133 (472)
+...|.|++.+......||+|+|.
T Consensus 163 vNai~s~k~n~~~~vt~td~~~a~Lkdf~i~iq~q~k~s~vlId~VsLk 211 (212)
T PF15425_consen 163 VNAISSFKMNPAEEVTDTDDDAAILKDFYICIQSQNKPSSVLIDDVSLK 211 (212)
T ss_dssp ES-SSBTTT-TT--EEE--TT-HHHHSEEEEEE--STT-EEEEEEEEEE
T ss_pred hHHHhhhccCCCCccccCccchhhhcceEEEEEEcCCCceEEecccEec
Confidence 123577787778888899999885
No 43
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=92.95 E-value=0.19 Score=54.22 Aligned_cols=115 Identities=17% Similarity=0.295 Sum_probs=81.3
Q ss_pred cceEEeecCCCCCCHHHHHHH----HccccceeeCCCCCCcccccCCCCCCcch---HHHHHHHHHhCCcEE--EEeEee
Q 042396 182 FPFGCAINKNILTNTAYQNWF----TSRFKVTAFEDEMKWYSTEASPGREDYSA---SDAMLQFAKNHNIAV--RGHNIF 252 (472)
Q Consensus 182 f~fG~av~~~~~~~~~~~~~~----~~~fn~vt~en~~kW~~~ep~~g~~~~~~---~D~~v~~a~~~gi~v--rGH~lv 252 (472)
..|...+|......+.+.+++ .-.+|.|.. -.-|.-.||.+|+|+|+. .-+.+..++++|+-| |..+-+
T Consensus 35 ~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~Iqt--YVfWn~Hep~~g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyI 112 (649)
T KOG0496|consen 35 ILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQT--YVFWNLHEPSPGKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYI 112 (649)
T ss_pred EEEEeccccccCChhhhHHHHHHHHhcCCceeee--eeecccccCCCCcccccchhHHHHHHHHHHHCCeEEEecCCCeE
Confidence 357778887665544444444 458999976 688999999999999984 445777888999876 333332
Q ss_pred ---cCCCCCCCcccCCC-------CHHHHHHHHHHHHHHHhhhc-------CCceEEEEeeccC
Q 042396 253 ---WDDPQYQPGWVNSL-------SPSDLSKAADKRINSVTSRY-------KGQVIAWDVVNEN 299 (472)
Q Consensus 253 ---W~~~~~~P~W~~~~-------~~~~~~~~~~~~i~~v~~ry-------~g~i~~WDVvNE~ 299 (472)
|.. +..|-|+... +.+..+..|+++.+.++.+- +|.|..=.|=||=
T Consensus 113 caEw~~-GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEY 175 (649)
T KOG0496|consen 113 CAEWNF-GGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEY 175 (649)
T ss_pred EecccC-CCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechh
Confidence 665 3578666542 45677788888887777632 4678888888984
No 44
>PF09092 Lyase_N: Lyase, N terminal; InterPro: IPR015176 This entry represents a domain predominantly found in chondroitin ABC lyase I, adopting a jelly-roll fold topology consisting of a two-layered bent beta-sheet sandwich with one short alpha-helix. The convex beta sheet is composed of five antiparallel strands, whilst the concave beta-sheet contains five antiparallel beta-strands with a loop between two consecutive strands folding back onto the concave surface. This domain is required for binding of the protein to long glycosaminoglycan chains []. ; PDB: 2Q1F_A 1HN0_A.
Probab=92.90 E-value=3.1 Score=38.18 Aligned_cols=119 Identities=9% Similarity=0.066 Sum_probs=67.8
Q ss_pred eCCCCCCC-CCCeeEecceEEEEecC---CCcee-------eeeEEE----ee----ecCCEE---EEEEEEEecCC-Cc
Q 042396 16 KNPELSHG-LKGWSAFGNAKIEQRES---GGNNS-------CISQKV----YL----EKNKFY---TLSAWIQVSEG-AA 72 (472)
Q Consensus 16 ~n~~FE~g-~~gW~~~g~~~~~~~~~---~G~~~-------g~~~~~----~l----~~G~~Y---~~SawVk~~~g-~~ 72 (472)
..-+||++ ...|+....+++++++. .|+++ |-.+++ .+ ..++.+ +|++||+-... +.
T Consensus 8 ~~~~Fe~~vp~~~~~~~~s~LslS~~hyK~G~~SL~W~w~~gs~l~i~~~~~~~~~~~~~k~~g~~~~~~WIYNe~p~~~ 87 (178)
T PF09092_consen 8 RMFDFENQVPDAFTTSQGSTLSLSDEHYKDGKQSLKWNWQPGSTLTISKPLGFEPDAPTSKDGGRSAFIFWIYNEKPQDD 87 (178)
T ss_dssp CEC-SSSTTTTCTEEECCEEEEEESSS-SSTT-EEEEEEECCEEEEEES-B----HHCCCCHHTCCEEEEEEEESS--SS
T ss_pred eeeccccCCCcceEecCCceEEeCHhHhhCCccccEEEcCCCCEEEEecccccccccccccccCcceEEEEEECCCCcCC
Confidence 35689988 68889888899999987 77754 333333 22 112222 39999996554 33
Q ss_pred cEEEEEEEC----CeEEEeeeEEEeCCCeEEEEeeEee----CC-Cc---cEEEEEEeC--CCceeEEEccccccc
Q 042396 73 PVTAVFKTI----TGFKHAGAAVAESKCWSMLKGGLSP----DA-SG---FAELYFESK--NTSVDIWVDSISLQP 134 (472)
Q Consensus 73 ~~~~~~~~~----~~~~~~~~~~v~~~~W~~l~g~~t~----~~-~~---~~~iy~e~~--~~~~~~yvDdv~l~~ 134 (472)
.+++.+..+ +...+.-.+-..=.+|--+--.|.= .. .+ .-.|.|..| ...+.+|+|-+.+..
T Consensus 88 ~l~f~F~~~~~~t~~~~~~F~~~LNFtGWR~~WV~y~~Dm~g~~~~g~~~md~l~i~AP~~~~~G~lf~D~l~~~~ 163 (178)
T PF09092_consen 88 KLRFEFGKGLINTGKPCYWFPFNLNFTGWRAAWVSYERDMQGRPEEGSKDMDSLRITAPANDPSGTLFFDRLIFSV 163 (178)
T ss_dssp EEEEEEECT--TTTEECEEEEEE---SEEEEEEEETTTTSEE---TT-----EEEEE--TTSSEEEEEEEEEEEEE
T ss_pred eEEEEecCCcccCCccceEEEEEeecccceeeeeeehhhccCCcccCcceeeEEEEEccccCCCccEEEEEEeecc
Confidence 477777664 5443333333344455555555442 11 12 446777777 788899999998865
No 45
>PLN00197 beta-amylase; Provisional
Probab=91.64 E-value=1.3 Score=47.02 Aligned_cols=63 Identities=22% Similarity=0.394 Sum_probs=50.9
Q ss_pred HHHHHccccceeeCCCCCCccccc-CCCCCCcchHHHHHHHHHhCCcEEEEeEeecCCC---------CCCCcccC
Q 042396 199 QNWFTSRFKVTAFEDEMKWYSTEA-SPGREDYSASDAMLQFAKNHNIAVRGHNIFWDDP---------QYQPGWVN 264 (472)
Q Consensus 199 ~~~~~~~fn~vt~en~~kW~~~ep-~~g~~~~~~~D~~v~~a~~~gi~vrGH~lvW~~~---------~~~P~W~~ 264 (472)
+.+-..+...|.. +.-|+-+|+ .|++|||+.-.++++.+++.||+++- +|-+|.= -.+|.|+.
T Consensus 134 ~~LK~~GVdGVmv--DvWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKlq~-VmSFHqCGGNVGD~~~IpLP~WV~ 206 (573)
T PLN00197 134 QALKSAGVEGIMM--DVWWGLVERESPGVYNWGGYNELLEMAKRHGLKVQA-VMSFHQCGGNVGDSCTIPLPKWVV 206 (573)
T ss_pred HHHHHcCCCEEEE--eeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEE-EEEecccCCCCCCcccccCCHHHH
Confidence 3444568999988 899999998 89999999999999999999999984 4566630 02789984
No 46
>PLN02161 beta-amylase
Probab=91.62 E-value=1.1 Score=47.24 Aligned_cols=64 Identities=14% Similarity=0.248 Sum_probs=51.6
Q ss_pred HHHHHHccccceeeCCCCCCccccc-CCCCCCcchHHHHHHHHHhCCcEEEEeEeecCC-----CC----CCCcccC
Q 042396 198 YQNWFTSRFKVTAFEDEMKWYSTEA-SPGREDYSASDAMLQFAKNHNIAVRGHNIFWDD-----PQ----YQPGWVN 264 (472)
Q Consensus 198 ~~~~~~~~fn~vt~en~~kW~~~ep-~~g~~~~~~~D~~v~~a~~~gi~vrGH~lvW~~-----~~----~~P~W~~ 264 (472)
.+.+-..+...|.. +.-|+-+|+ .|++|||+.-.++++.+++.||+++- +|-+|. .+ .+|.|+.
T Consensus 123 L~~LK~~GVdGVmv--DVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~-vmSFHqCGGNvGd~~~IpLP~WV~ 196 (531)
T PLN02161 123 LKALKLAGVHGIAV--EVWWGIVERFSPLEFKWSLYEELFRLISEAGLKLHV-ALCFHSNMHLFGGKGGISLPLWIR 196 (531)
T ss_pred HHHHHHcCCCEEEE--EeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEE-EEEecccCCCCCCccCccCCHHHH
Confidence 34444568999988 899999998 89999999999999999999999974 456663 01 2789985
No 47
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=91.45 E-value=2.6 Score=35.78 Aligned_cols=85 Identities=14% Similarity=0.131 Sum_probs=51.8
Q ss_pred eeeEE-EeeecCCEEEEEEEEEecCCCccEEEEEEECC---eEEEeeeEEEe--CCCeEEEEeeEeeCCCccEEEEEEeC
Q 042396 46 CISQK-VYLEKNKFYTLSAWIQVSEGAAPVTAVFKTIT---GFKHAGAAVAE--SKCWSMLKGGLSPDASGFAELYFESK 119 (472)
Q Consensus 46 g~~~~-~~l~~G~~Y~~SawVk~~~g~~~~~~~~~~~~---~~~~~~~~~v~--~~~W~~l~g~~t~~~~~~~~iy~e~~ 119 (472)
-+.+. |.+..+.+|.|++.+....+. -++.|+.|+ +......+..+ -..|+.++....++. +.-.|||...
T Consensus 33 ~~~~~~Vd~~~~g~y~~~~~~a~~~~~--~~~~l~id~~~g~~~~~~~~~~tg~w~~~~~~~~~v~l~~-G~h~i~l~~~ 109 (125)
T PF03422_consen 33 WIEYNNVDVPEAGTYTLTIRYANGGGG--GTIELRIDGPDGTLIGTVSLPPTGGWDTWQTVSVSVKLPA-GKHTIYLVFN 109 (125)
T ss_dssp EEEEEEEEESSSEEEEEEEEEEESSSS--EEEEEEETTTTSEEEEEEEEE-ESSTTEEEEEEEEEEEES-EEEEEEEEES
T ss_pred EEEEEEEeeCCCceEEEEEEEECCCCC--cEEEEEECCCCCcEEEEEEEcCCCCccccEEEEEEEeeCC-CeeEEEEEEE
Confidence 35555 789999999999666554433 455555544 43222222222 235777888777777 6667777764
Q ss_pred CCc-eeEEEcccccc
Q 042396 120 NTS-VDIWVDSISLQ 133 (472)
Q Consensus 120 ~~~-~~~yvDdv~l~ 133 (472)
... ..+.||-|+|.
T Consensus 110 ~~~~~~~niD~~~f~ 124 (125)
T PF03422_consen 110 GGDGWAFNIDYFQFT 124 (125)
T ss_dssp SSSSB-EEEEEEEEE
T ss_pred CCCCceEEeEEEEEE
Confidence 333 45778888764
No 48
>PF03425 CBM_11: Carbohydrate binding domain (family 11); InterPro: IPR005087 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM11 from CAZY which binds both beta-1,4-glucan and beta-1,3-1,4-mixed linked glucans.; GO: 0008810 cellulase activity, 0030245 cellulose catabolic process; PDB: 1V0A_A.
Probab=91.35 E-value=1 Score=41.28 Aligned_cols=78 Identities=14% Similarity=0.244 Sum_probs=39.3
Q ss_pred CEEEEEEEEEecCCCccEEEEEEECCeEE-EeeeEEEeCCCeEEEEeeE---ee------CC---C------c--cEEEE
Q 042396 57 KFYTLSAWIQVSEGAAPVTAVFKTITGFK-HAGAAVAESKCWSMLKGGL---SP------DA---S------G--FAELY 115 (472)
Q Consensus 57 ~~Y~~SawVk~~~g~~~~~~~~~~~~~~~-~~~~~~v~~~~W~~l~g~~---t~------~~---~------~--~~~iy 115 (472)
..--|++|+|..++...+++++...+.+. ....+++... |++++-.| +. .. . . .+.+|
T Consensus 72 ~~~gl~Fw~k~dgs~~~l~vqi~d~~~~e~~~~~~~~~~~-W~~V~IPF~~f~~~~~~~p~g~~~~~~ldl~~v~~~~~~ 150 (178)
T PF03425_consen 72 GYGGLSFWIKGDGSGNKLRVQIKDGGDYEYWEASFTDSST-WKTVEIPFSDFTQRPDYQPGGWGADGTLDLTNVWEFAFY 150 (178)
T ss_dssp T--EEEEEEEE------EEEEEEEE-EEEEEEEEE---SS--EEEEEEGGG-EE--S---TT----SS--TTSEEEEEEE
T ss_pred cCCcEEEEEEcCCCCcEEEEEEecCCcceeeEeecCCCCc-CEEEEEEHHHcccccccCCCCCCcccccChHHcEEEEEE
Confidence 44579999998843445887776643232 2345555554 99988764 33 11 0 1 23455
Q ss_pred EEeCCCceeEEEcccccccc
Q 042396 116 FESKNTSVDIWVDSISLQPF 135 (472)
Q Consensus 116 ~e~~~~~~~~yvDdv~l~~~ 135 (472)
+..+....+||||||.|.+.
T Consensus 151 ~~~~~~~~~~~iDdI~l~~~ 170 (178)
T PF03425_consen 151 VNGGGGAGTFYIDDIRLYGA 170 (178)
T ss_dssp ESSS---EEEEEEEEEEE-B
T ss_pred EcCCCceeEEEEEeEEEEeC
Confidence 54433338999999999864
No 49
>PLN02803 beta-amylase
Probab=90.91 E-value=1.3 Score=46.98 Aligned_cols=64 Identities=13% Similarity=0.243 Sum_probs=51.2
Q ss_pred HHHHHHccccceeeCCCCCCccccc-CCCCCCcchHHHHHHHHHhCCcEEEEeEeecCCC---------CCCCcccC
Q 042396 198 YQNWFTSRFKVTAFEDEMKWYSTEA-SPGREDYSASDAMLQFAKNHNIAVRGHNIFWDDP---------QYQPGWVN 264 (472)
Q Consensus 198 ~~~~~~~~fn~vt~en~~kW~~~ep-~~g~~~~~~~D~~v~~a~~~gi~vrGH~lvW~~~---------~~~P~W~~ 264 (472)
.+.+-..+...|.. +.-|+-+|+ .|++|||+.-.++++.+++.||+++. +|-+|.= -.+|.|+.
T Consensus 113 L~~LK~~GVdGVmv--DVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~-vmSFHqCGGNVGD~~~IpLP~WV~ 186 (548)
T PLN02803 113 LMALRSAGVEGVMV--DAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKLQV-VMSFHQCGGNVGDSCSIPLPPWVL 186 (548)
T ss_pred HHHHHHcCCCEEEE--EeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEE-EEEecccCCCCCCcccccCCHHHH
Confidence 33444568999988 899999998 59999999999999999999999984 4556630 02789974
No 50
>PLN02705 beta-amylase
Probab=89.53 E-value=1.9 Score=46.31 Aligned_cols=64 Identities=11% Similarity=0.231 Sum_probs=51.3
Q ss_pred HHHHHHccccceeeCCCCCCccccc-CCCCCCcchHHHHHHHHHhCCcEEEEeEeecCCC---------CCCCcccC
Q 042396 198 YQNWFTSRFKVTAFEDEMKWYSTEA-SPGREDYSASDAMLQFAKNHNIAVRGHNIFWDDP---------QYQPGWVN 264 (472)
Q Consensus 198 ~~~~~~~~fn~vt~en~~kW~~~ep-~~g~~~~~~~D~~v~~a~~~gi~vrGH~lvW~~~---------~~~P~W~~ 264 (472)
.+.+-..+...|.. +.-|+-+|+ .|++|||+.-.++++.+++.||+++. +|-+|.- -.+|.|+.
T Consensus 274 L~aLK~aGVdGVmv--DVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqv-VmSFHqCGGNVGD~~~IPLP~WV~ 347 (681)
T PLN02705 274 LSHMKSLNVDGVVV--DCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKLQV-VMAFHEYGGNASGNVMISLPQWVL 347 (681)
T ss_pred HHHHHHcCCCEEEE--eeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeEEE-EEEeeccCCCCCCcccccCCHHHH
Confidence 33444568999988 899999998 79999999999999999999999974 4556630 02789975
No 51
>PLN02801 beta-amylase
Probab=89.38 E-value=2.9 Score=44.21 Aligned_cols=63 Identities=14% Similarity=0.332 Sum_probs=50.5
Q ss_pred HHHHHccccceeeCCCCCCccccc-CCCCCCcchHHHHHHHHHhCCcEEEEeEeecCCCC---------CCCcccC
Q 042396 199 QNWFTSRFKVTAFEDEMKWYSTEA-SPGREDYSASDAMLQFAKNHNIAVRGHNIFWDDPQ---------YQPGWVN 264 (472)
Q Consensus 199 ~~~~~~~fn~vt~en~~kW~~~ep-~~g~~~~~~~D~~v~~a~~~gi~vrGH~lvW~~~~---------~~P~W~~ 264 (472)
+++-..+...|.. +.-|+.+|+ .|++|||+.-.++++.+++.||+++. +|-+|.=+ ..|.|+.
T Consensus 44 ~~LK~~GVdGVmv--DVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq~-vmSFHqCGGNVGD~~~IpLP~WV~ 116 (517)
T PLN02801 44 KRLKEAGVDGVMV--DVWWGIVESKGPKQYDWSAYRSLFELVQSFGLKIQA-IMSFHQCGGNVGDAVNIPIPQWVR 116 (517)
T ss_pred HHHHHcCCCEEEE--eeeeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEE-EEEecccCCCCCCcccccCCHHHH
Confidence 3444568999988 899999997 69999999999999999999999974 45566300 2689985
No 52
>PLN02905 beta-amylase
Probab=89.03 E-value=2.3 Score=45.96 Aligned_cols=64 Identities=13% Similarity=0.250 Sum_probs=51.3
Q ss_pred HHHHHHccccceeeCCCCCCccccc-CCCCCCcchHHHHHHHHHhCCcEEEEeEeecCCC---------CCCCcccC
Q 042396 198 YQNWFTSRFKVTAFEDEMKWYSTEA-SPGREDYSASDAMLQFAKNHNIAVRGHNIFWDDP---------QYQPGWVN 264 (472)
Q Consensus 198 ~~~~~~~~fn~vt~en~~kW~~~ep-~~g~~~~~~~D~~v~~a~~~gi~vrGH~lvW~~~---------~~~P~W~~ 264 (472)
.+.+-..+...|.. +.-|+-+|+ .|++|||+.-.++++.+++.||+++. +|-+|.= -.+|.|+.
T Consensus 292 L~aLK~aGVdGVmv--DVWWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKlqv-VMSFHqCGGNVGD~~~IPLP~WV~ 365 (702)
T PLN02905 292 LRILKSINVDGVKV--DCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQV-VMSFHECGGNVGDDVCIPLPHWVA 365 (702)
T ss_pred HHHHHHcCCCEEEE--eeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEE-EEEecccCCCCCCcccccCCHHHH
Confidence 33444568999988 899999998 89999999999999999999999974 4566630 02789974
No 53
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=88.23 E-value=4.2 Score=40.88 Aligned_cols=145 Identities=11% Similarity=0.059 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHhh-hcCC----ceEEEEeeccCccccccccccCchHHHHHHHHHHhhCCCCeEEEe-ccCCcccC
Q 042396 268 PSDLSKAADKRINSVTS-RYKG----QVIAWDVVNENLHFSFFESKLGQNASGVFFNRVHSLDGATTLFMN-DYNTIEDS 341 (472)
Q Consensus 268 ~~~~~~~~~~~i~~v~~-ry~g----~i~~WDVvNE~~~~~~~~~~~G~~~~~~af~~Ar~~dP~a~L~~N-dy~~~~~~ 341 (472)
.++.++.|.+++..++. -|.| .++.|.-+++.-........---+++....+.||+..|+++|+.| ++.+++..
T Consensus 142 ~~~W~~il~~rl~~l~~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~NnG~eil~~~ 221 (315)
T TIGR01370 142 DPEWKAIAFSYLDRVIAQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIPQNGEELLRDD 221 (315)
T ss_pred cHHHHHHHHHHHHHHHHcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEecCchhhhhcc
Confidence 34567888888887765 3665 566665555432100000000014677777888999999999865 33322110
Q ss_pred CCCCCCHHHHHHHHHHHhcCcCCCCCcceeeeccccCC----CC---HHHHHHHHHHHHhcCCCEEEeeeccCCCc--hH
Q 042396 342 RDGKATPAMYLQKLRQISEFPGNQNLRIGIGLESHFST----PN---IPYMRASIDTLGATGLPIWLTEVDVQSSP--NQ 412 (472)
Q Consensus 342 ~~~~~~~~~~~~~~~~l~~~~~~~G~~DgIG~Q~H~~~----p~---~~~~~~~l~~~a~~g~pi~iTE~dv~~~~--~q 412 (472)
. ..+ .+..|||+..+=+.. .+ .......|+++...|+||.+.|+--+..+ ..
T Consensus 222 ~------g~~-------------~~~idgV~~Eslf~~~~~~~~e~dr~~~l~~L~~~~~~G~~Vl~IDY~~~~~~~~~n 282 (315)
T TIGR01370 222 H------GGL-------------AATVSGWAVEELFYYAANRPTEAERQRRLLALYRLWQQGKFVLTVDYVDDGTKTNEN 282 (315)
T ss_pred c------cch-------------hhhceEEEecceEEcCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEEecCCcccchhh
Confidence 0 001 122388888764432 12 23455667777777999999999765432 22
Q ss_pred HHHHHHHHHHHHcCCCeeEEEEE
Q 042396 413 AQYLEQILREAHAHPKVQGIVVW 435 (472)
Q Consensus 413 A~~~~~~~~~~~s~p~v~gi~~W 435 (472)
....+++.+.|.++ |++.|
T Consensus 283 ~~~~~~~~~~~~~~----Gf~pY 301 (315)
T TIGR01370 283 PARMKDAAEKARAA----GLIPY 301 (315)
T ss_pred HHHHHHHHHHHHHc----CCeee
Confidence 44556666666665 55444
No 54
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=85.93 E-value=0.98 Score=45.35 Aligned_cols=74 Identities=16% Similarity=0.246 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhcCCCEEEeeeccCCCc-------hHHHHHHHHHHHHHc----CCCe-eEEEEEceec----CCC--CC
Q 042396 383 PYMRASIDTLGATGLPIWLTEVDVQSSP-------NQAQYLEQILREAHA----HPKV-QGIVVWAAWK----PSG--CY 444 (472)
Q Consensus 383 ~~~~~~l~~~a~~g~pi~iTE~dv~~~~-------~qA~~~~~~~~~~~s----~p~v-~gi~~Wg~w~----~~~--~~ 444 (472)
+.+..++.+++..+++|+|||.++++.- ..+.+.+.+++.+.+ .|+. ..+.+..++| ++. |.
T Consensus 214 da~~~a~~~~g~~~~~vvv~ETGWPs~G~~~a~~~nA~~~~~nl~~~~~~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~ 293 (310)
T PF00332_consen 214 DAVYAAMEKLGFPNVPVVVGETGWPSAGDPGATPENAQAYNQNLIKHVLKGTPLRPGNGIDVYIFEAFDENWKPGPEVER 293 (310)
T ss_dssp HHHHHHHHTTT-TT--EEEEEE---SSSSTTCSHHHHHHHHHHHHHHCCGBBSSSBSS---EEES-SB--TTSSSSGGGG
T ss_pred HHHHHHHHHhCCCCceeEEeccccccCCCCCCCcchhHHHHHHHHHHHhCCCcccCCCCCeEEEEEEecCcCCCCCcccc
Confidence 3455555555555789999999999761 234455555554431 2331 2334444443 332 46
Q ss_pred ccccccCCCCcc
Q 042396 445 RMCLTDNNFKNL 456 (472)
Q Consensus 445 ~~~L~d~d~~pK 456 (472)
++|||+.|.+||
T Consensus 294 ~wGlf~~d~~~k 305 (310)
T PF00332_consen 294 HWGLFYPDGTPK 305 (310)
T ss_dssp G--SB-TTSSBS
T ss_pred eeeeECCCCCee
Confidence 899999999887
No 55
>cd06263 MAM Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.
Probab=85.00 E-value=7.5 Score=34.29 Aligned_cols=77 Identities=21% Similarity=0.197 Sum_probs=51.7
Q ss_pred CEEEEEEEEEecCC-CccEEEEEEE-CC-eEEEeeeEEEe-CCCeEEEEeeEeeCCCccEEEEEEeC---CCceeEEEcc
Q 042396 57 KFYTLSAWIQVSEG-AAPVTAVFKT-IT-GFKHAGAAVAE-SKCWSMLKGGLSPDASGFAELYFESK---NTSVDIWVDS 129 (472)
Q Consensus 57 ~~Y~~SawVk~~~g-~~~~~~~~~~-~~-~~~~~~~~~v~-~~~W~~l~g~~t~~~~~~~~iy~e~~---~~~~~~yvDd 129 (472)
...-+++|.++.+. ...++|.++. ++ ....+-+.... .+.|++.+-.+.... ....|.||+- ....++-|||
T Consensus 71 ~~~Cl~F~y~~~g~~~g~L~V~v~~~~~~~~~~lw~~~~~~~~~W~~~~v~l~~~~-~~fqi~fe~~~~~~~~g~IAIDd 149 (157)
T cd06263 71 SSHCLSFWYHMYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSASS-KPFQVVFEGVRGSGSRGDIALDD 149 (157)
T ss_pred CCeEEEEEEEecCCCCCeEEEEEEeCCCCcceEEEEEECCCCCeeEEEEEEECCCC-CceEEEEEEEECCCccccEEEeE
Confidence 45669999888764 4458888877 33 23333333222 578998887776653 5667777764 3558999999
Q ss_pred ccccc
Q 042396 130 ISLQP 134 (472)
Q Consensus 130 v~l~~ 134 (472)
|+|.+
T Consensus 150 I~l~~ 154 (157)
T cd06263 150 ISLSP 154 (157)
T ss_pred EEEec
Confidence 99875
No 56
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=84.62 E-value=0.78 Score=47.23 Aligned_cols=96 Identities=13% Similarity=0.234 Sum_probs=61.1
Q ss_pred HHHHHHHccccceeeCCCCCCcccccC-CCCCCcchHHHHHHHHHhCCcEEEEeEeecCCCC---------CCCcccCC-
Q 042396 197 AYQNWFTSRFKVTAFEDEMKWYSTEAS-PGREDYSASDAMLQFAKNHNIAVRGHNIFWDDPQ---------YQPGWVNS- 265 (472)
Q Consensus 197 ~~~~~~~~~fn~vt~en~~kW~~~ep~-~g~~~~~~~D~~v~~a~~~gi~vrGH~lvW~~~~---------~~P~W~~~- 265 (472)
..+++-..+...|.. +.-|+.+|+. |++|||+.-+++.+.+++.||+++- +|-.|.-+ .+|.|+..
T Consensus 21 ~L~~LK~~GV~GVmv--dvWWGiVE~~~p~~ydWs~Y~~l~~~vr~~GLk~~~-vmsfH~cGgNvgD~~~IpLP~Wv~~~ 97 (402)
T PF01373_consen 21 QLRALKSAGVDGVMV--DVWWGIVEGEGPQQYDWSGYRELFEMVRDAGLKLQV-VMSFHQCGGNVGDDCNIPLPSWVWEI 97 (402)
T ss_dssp HHHHHHHTTEEEEEE--EEEHHHHTGSSTTB---HHHHHHHHHHHHTT-EEEE-EEE-S-BSSSTTSSSEB-S-HHHHHH
T ss_pred HHHHHHHcCCcEEEE--EeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEE-EEeeecCCCCCCCccCCcCCHHHHhc
Confidence 344455568888888 8999999997 9999999999999999999999974 44455310 26899842
Q ss_pred -------------------CC----HHHHHHHHHHHHHHHhhhcCC---ceEEEEee
Q 042396 266 -------------------LS----PSDLSKAADKRINSVTSRYKG---QVIAWDVV 296 (472)
Q Consensus 266 -------------------~~----~~~~~~~~~~~i~~v~~ry~g---~i~~WDVv 296 (472)
++ .-. .+...++++...++|+. .|....|-
T Consensus 98 ~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~~~~~~I~~I~vg 153 (402)
T PF01373_consen 98 GKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFSDYLSTITEIQVG 153 (402)
T ss_dssp HHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCHHHHTGEEEEEE-
T ss_pred cccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHHHHHhhheEEEec
Confidence 11 122 56667777777776654 44444443
No 57
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=84.32 E-value=13 Score=33.77 Aligned_cols=97 Identities=8% Similarity=0.155 Sum_probs=66.2
Q ss_pred chHHHHHHHHHhCCcEEEEeEeecCCCCCCCcccCCCCHHHHHHHHHHHHHHHhhhcCC--ceEEEEeeccCcccccccc
Q 042396 230 SASDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVNSLSPSDLSKAADKRINSVTSRYKG--QVIAWDVVNENLHFSFFES 307 (472)
Q Consensus 230 ~~~D~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~~~~~~~~~~~~~~~~i~~v~~ry~g--~i~~WDVvNE~~~~~~~~~ 307 (472)
+..+.+++.|.++||+|.-.+- ..|.|....+.+...+.-..-+.++..+|+. .+..|=+-.|+...+ |..
T Consensus 65 d~l~~~L~~A~~~Gmkv~~Gl~------~~~~~w~~~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~-~~~ 137 (166)
T PF14488_consen 65 DLLEMILDAADKYGMKVFVGLY------FDPDYWDQGDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDYN-WNA 137 (166)
T ss_pred cHHHHHHHHHHHcCCEEEEeCC------CCchhhhccCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCcc-cch
Confidence 4688999999999999974432 2456665433333222223355667777876 688999999986533 332
Q ss_pred ccCchHHHHHHHHHHhhCCCCeEEEeccC
Q 042396 308 KLGQNASGVFFNRVHSLDGATTLFMNDYN 336 (472)
Q Consensus 308 ~~G~~~~~~af~~Ar~~dP~a~L~~Ndy~ 336 (472)
.+.....-+.+++..|+..++|.-|.
T Consensus 138 ---~~~~~~l~~~lk~~s~~~Pv~ISpf~ 163 (166)
T PF14488_consen 138 ---PERFALLGKYLKQISPGKPVMISPFI 163 (166)
T ss_pred ---HHHHHHHHHHHHHhCCCCCeEEecCc
Confidence 45667777888999999999887664
No 58
>PF04620 FlaA: Flagellar filament outer layer protein Flaa; InterPro: IPR006714 Periplasmic flagella are the organelles of spirochete mobility, and are structurally different from the flagella of other motile bacteria. They reside inside the cell within the periplasmic space, and confer mobility in viscous gel-like media such as connective tissue []. The flagella are composed of an outer sheath of FlaA proteins and a core filament of FlaB proteins. Each species usually has several FlaA protein species [].; GO: 0001539 ciliary or flagellar motility, 0030288 outer membrane-bounded periplasmic space
Probab=83.81 E-value=11 Score=35.73 Aligned_cols=51 Identities=8% Similarity=0.122 Sum_probs=37.4
Q ss_pred ecCCEEEEEEEEEecCCCccEEEEEEE-CCeEEEeeeEEEeCCCeEEEEeeE
Q 042396 54 EKNKFYTLSAWIQVSEGAAPVTAVFKT-ITGFKHAGAAVAESKCWSMLKGGL 104 (472)
Q Consensus 54 ~~G~~Y~~SawVk~~~g~~~~~~~~~~-~~~~~~~~~~~v~~~~W~~l~g~~ 104 (472)
-+|...+||+||.-.+-...+++.|+. +|+...+--....-.+|+.|+...
T Consensus 103 i~g~~k~I~vWV~G~n~~h~L~v~lrD~~G~~~~l~~G~L~f~GWK~L~~~i 154 (217)
T PF04620_consen 103 IPGVIKSISVWVYGDNYPHWLEVLLRDAKGEVHQLPLGSLNFDGWKNLTVNI 154 (217)
T ss_pred ccceeEEEEEEEECCCCCceEEEEEEcCCCCEEEEEeeeecCCceeEEEEEC
Confidence 578899999999887656668999988 775433322345567999998863
No 59
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=81.73 E-value=27 Score=35.00 Aligned_cols=156 Identities=11% Similarity=0.153 Sum_probs=89.7
Q ss_pred CcchHHHHHHHHHhCCcEEEEeEee---cCCC----CCCCcccC--------C----------CC--HHHHHHHHHHHHH
Q 042396 228 DYSASDAMLQFAKNHNIAVRGHNIF---WDDP----QYQPGWVN--------S----------LS--PSDLSKAADKRIN 280 (472)
Q Consensus 228 ~~~~~D~~v~~a~~~gi~vrGH~lv---W~~~----~~~P~W~~--------~----------~~--~~~~~~~~~~~i~ 280 (472)
.|+.+..+|+-|.++||+|++=.-+ .... ...|.|+. . ++ .++.++.+.+-|+
T Consensus 68 g~DpL~~~I~eaHkrGlevHAW~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~ 147 (311)
T PF02638_consen 68 GFDPLEFMIEEAHKRGLEVHAWFRVGFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVK 147 (311)
T ss_pred CccHHHHHHHHHHHcCCEEEEEEEeecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHH
Confidence 4789999999999999999754310 0100 12455532 1 12 2678999999999
Q ss_pred HHhhhcC-CceEEEE-ee---ccC----ccccccccccC--------------------chHHHHHHHHHHhhCCCCeEE
Q 042396 281 SVTSRYK-GQVIAWD-VV---NEN----LHFSFFESKLG--------------------QNASGVFFNRVHSLDGATTLF 331 (472)
Q Consensus 281 ~v~~ry~-g~i~~WD-Vv---NE~----~~~~~~~~~~G--------------------~~~~~~af~~Ar~~dP~a~L~ 331 (472)
+++++|. +-| +.| .. .+. .....|.+..| .++++..++.+|+..|++++-
T Consensus 148 Eiv~~YdvDGI-hlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~s 226 (311)
T PF02638_consen 148 EIVKNYDVDGI-HLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKFS 226 (311)
T ss_pred HHHhcCCCCeE-EecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 9999996 112 233 11 000 00011222111 135788899999999999998
Q ss_pred EeccCCcccCCCCCCCHHHHHHHHHHHhcCcCCCCCcceeeeccccCC-CC-HHHHHHHHHHHHh
Q 042396 332 MNDYNTIEDSRDGKATPAMYLQKLRQISEFPGNQNLRIGIGLESHFST-PN-IPYMRASIDTLGA 394 (472)
Q Consensus 332 ~Ndy~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~DgIG~Q~H~~~-p~-~~~~~~~l~~~a~ 394 (472)
+.=++..... ...+++....-.+ +|..|-|=-|.+... .. ...+...++..+.
T Consensus 227 isp~g~~~~~------y~~~~qD~~~W~~----~G~iD~i~Pq~Y~~~~~~~~~~~~~~~~~w~~ 281 (311)
T PF02638_consen 227 ISPFGIWNSA------YDDYYQDWRNWLK----EGYIDYIVPQIYWSDFSHFTAPYEQLAKWWAK 281 (311)
T ss_pred EEeecchhhh------hhheeccHHHHHh----cCCccEEEeeecccccchhHHHHHHHHHHHHH
Confidence 7544332111 1223322333334 788899999988773 22 2345555555543
No 60
>PF14299 PP2: Phloem protein 2
Probab=81.55 E-value=13 Score=33.26 Aligned_cols=83 Identities=14% Similarity=0.240 Sum_probs=51.2
Q ss_pred eeecCCEEEEEEEEEecCC-----CccEEEEEEE-CCe-EE---EeeeEEEeCCCeEEEEe-eEeeCCCccEEEEE---E
Q 042396 52 YLEKNKFYTLSAWIQVSEG-----AAPVTAVFKT-ITG-FK---HAGAAVAESKCWSMLKG-GLSPDASGFAELYF---E 117 (472)
Q Consensus 52 ~l~~G~~Y~~SawVk~~~g-----~~~~~~~~~~-~~~-~~---~~~~~~v~~~~W~~l~g-~~t~~~~~~~~iy~---e 117 (472)
.|.+|.+|.++.-+|+.+. ..++++++.. +++ +. .+.-.....++|-+|+. +|..+......|+| |
T Consensus 55 ~Lsp~t~Y~vy~v~kl~~~~~Gw~~~pv~~~v~~~~~~~~~~~~~~~~~~~r~dgW~Eie~GeF~~~~~~~~ev~f~~~E 134 (154)
T PF14299_consen 55 MLSPGTTYAVYFVFKLKDDAYGWDSPPVEFSVKVPDGEKYEQERKVCLPKERGDGWMEIELGEFFNEGGDDGEVEFSMYE 134 (154)
T ss_pred EcCCCCEEEEEEEEEecCCCCCCCcCCEEEEEEeCCCccccceeeEEcCCCCCCCEEEEEcceEEecCCCCcEEEEEEEE
Confidence 6899999999999999864 3367777766 432 11 12222344789999987 68777533223333 3
Q ss_pred eC--CCceeEEEccccccc
Q 042396 118 SK--NTSVDIWVDSISLQP 134 (472)
Q Consensus 118 ~~--~~~~~~yvDdv~l~~ 134 (472)
.. .-..-+.|+.|.|.|
T Consensus 135 ~~~~~wK~GLiv~GieIRP 153 (154)
T PF14299_consen 135 VDSGHWKGGLIVEGIEIRP 153 (154)
T ss_pred ecCCcccCeEEEEEEEEec
Confidence 22 223355666666654
No 61
>PF00629 MAM: MAM domain; InterPro: IPR000998 MAM is an acronym derived from meprin, A-5 protein, and receptor protein-tyrosine phosphatase mu. The MAM domain consists of approximately 170 amino acids. It occurs in several cell surface proteins, including Meprins, and is thought to function as an interaction or adhesion domain []. The domain has been shown to play a role in homodimerization of protein-tyrosine phosphatase mu [] and appears to help determine the specificity of these interactions. It has been reported that certain cysteine mutations in the MAM domain of murine meprin A result in the formation of monomeric meprin, which has altered stability and activity []. This indicates that these domain-domain interactions are critical for structure and function of the enzyme. It has also been shown that the MAM domain of meprins is necessary for correct folding and transport through the secretory pathway []. ; GO: 0016020 membrane; PDB: 2C9A_A 2V5Y_A.
Probab=81.41 E-value=13 Score=32.39 Aligned_cols=82 Identities=21% Similarity=0.258 Sum_probs=43.2
Q ss_pred eeecCCEEEEEEEEEecCCC-ccEEEEEEEC-C-eEEEeee-EEEeCCCeEEEEeeEeeCCCccEEEEEEeC---CCcee
Q 042396 52 YLEKNKFYTLSAWIQVSEGA-APVTAVFKTI-T-GFKHAGA-AVAESKCWSMLKGGLSPDASGFAELYFESK---NTSVD 124 (472)
Q Consensus 52 ~l~~G~~Y~~SawVk~~~g~-~~~~~~~~~~-~-~~~~~~~-~~v~~~~W~~l~g~~t~~~~~~~~iy~e~~---~~~~~ 124 (472)
.+.....+-+++|....+.+ ..+++.+... . ....+.. .....+.|++..-.+... .....|.||.- .....
T Consensus 67 ~~~~~~~~cl~F~y~~~g~~~~~L~V~v~~~~~~~~~~l~~~~~~~~~~W~~~~v~l~~~-~~~~~i~f~~~~~~~~~~~ 145 (160)
T PF00629_consen 67 VFPASGNSCLSFWYYMYGSSVGTLRVYVREESTGNSTPLWSITGSQGNSWQRAQVNLPPI-SSPFQIIFEAIRGSSYRGD 145 (160)
T ss_dssp EE--SS--EEEEEEEEE-SSSEEEEEEEEETT----S-SEEE-----SSEEEEEEEE----TS-EEEEEEEEE--SS--E
T ss_pred cccccccceeEEEEeeccccceeeEEEEEecCCccceeeeeecCCCcCCccceEEEcccc-cccceEEEEEEEcCCCceE
Confidence 44555677799999887543 3477766663 2 2222222 223467899888777664 46667777653 34589
Q ss_pred EEEccccccc
Q 042396 125 IWVDSISLQP 134 (472)
Q Consensus 125 ~yvDdv~l~~ 134 (472)
+-||||+|.+
T Consensus 146 iaiDdi~~~~ 155 (160)
T PF00629_consen 146 IAIDDISLSP 155 (160)
T ss_dssp EEEEEEEEES
T ss_pred EEEEEEEEeC
Confidence 9999999975
No 62
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=80.73 E-value=60 Score=31.82 Aligned_cols=160 Identities=22% Similarity=0.233 Sum_probs=85.6
Q ss_pred hHHHHHHHHHhCCcEEEEeEeecCCCCCCCcccCCCCHHHHHHHHHHHHHHHhhhcCC--ceEEEEeeccCccccccc-c
Q 042396 231 ASDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVNSLSPSDLSKAADKRINSVTSRYKG--QVIAWDVVNENLHFSFFE-S 307 (472)
Q Consensus 231 ~~D~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~~~~~~~~~~~~~~~~i~~v~~ry~g--~i~~WDVvNE~~~~~~~~-~ 307 (472)
....+...+.+.|+++.-. +|.. ++= ...+++-|..-..-|.+ .|...-|-||.+.++.-. .
T Consensus 88 ~le~v~pAa~~~g~kv~lG--iw~t----dd~---------~~~~~~til~ay~~~~~~d~v~~v~VGnEal~r~~~tas 152 (305)
T COG5309 88 TLENVLPAAEASGFKVFLG--IWPT----DDI---------HDAVEKTILSAYLPYNGWDDVTTVTVGNEALNRNDLTAS 152 (305)
T ss_pred hhhhhHHHHHhcCceEEEE--Eeec----cch---------hhhHHHHHHHHHhccCCCCceEEEEechhhhhcCCCCHH
Confidence 3455778889999887422 5653 221 22233222222233333 677888999998644211 1
Q ss_pred ccCchHHHHHHHHHHhhCCCCeEEEec-cCCcccCCCCCCCHHHHHHHHHHHhcCcCCCCCcceeeeccccCC---C--C
Q 042396 308 KLGQNASGVFFNRVHSLDGATTLFMND-YNTIEDSRDGKATPAMYLQKLRQISEFPGNQNLRIGIGLESHFST---P--N 381 (472)
Q Consensus 308 ~~G~~~~~~af~~Ar~~dP~a~L~~Nd-y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~DgIG~Q~H~~~---p--~ 381 (472)
.+ -+||..+=-+.+++.=+.++.--| ++.+.. + + ...+. .|=|+...|.+- + +
T Consensus 153 ql-~~~I~~vrsav~~agy~gpV~T~dsw~~~~~-n-----p-~l~~~-------------SDfia~N~~aYwd~~~~a~ 211 (305)
T COG5309 153 QL-IEYIDDVRSAVKEAGYDGPVTTVDSWNVVIN-N-----P-ELCQA-------------SDFIAANAHAYWDGQTVAN 211 (305)
T ss_pred HH-HHHHHHHHHHHHhcCCCCceeecccceeeeC-C-----h-HHhhh-------------hhhhhcccchhccccchhh
Confidence 12 156666656666665555443222 111111 0 1 11111 144555556553 1 1
Q ss_pred H--HHHHHHHHHHH-h--cCCCEEEeeeccCCC-----------chHHHHHHHHHHHHHcC
Q 042396 382 I--PYMRASIDTLG-A--TGLPIWLTEVDVQSS-----------PNQAQYLEQILREAHAH 426 (472)
Q Consensus 382 ~--~~~~~~l~~~a-~--~g~pi~iTE~dv~~~-----------~~qA~~~~~~~~~~~s~ 426 (472)
. .-+.+.|+++. . ..+++||||.++++. ..|++++++++-.+.+.
T Consensus 212 ~~~~f~~~q~e~vqsa~g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~~ 272 (305)
T COG5309 212 AAGTFLLEQLERVQSACGTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRSC 272 (305)
T ss_pred hhhHHHHHHHHHHHHhcCCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhcc
Confidence 1 12334466663 2 237999999999986 27999999998876664
No 63
>smart00137 MAM Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others). Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.
Probab=79.55 E-value=18 Score=32.36 Aligned_cols=77 Identities=16% Similarity=0.114 Sum_probs=49.3
Q ss_pred CEEEEEEEEEecCCC-ccEEEEEEE-CCeE-EEeeeEEE-eCCCeEEEEeeEeeCCCccEEEEEEeC---CCceeEEEcc
Q 042396 57 KFYTLSAWIQVSEGA-APVTAVFKT-ITGF-KHAGAAVA-ESKCWSMLKGGLSPDASGFAELYFESK---NTSVDIWVDS 129 (472)
Q Consensus 57 ~~Y~~SawVk~~~g~-~~~~~~~~~-~~~~-~~~~~~~v-~~~~W~~l~g~~t~~~~~~~~iy~e~~---~~~~~~yvDd 129 (472)
..+.+++|.++.+.. ..++|.++. +++. ..+-+... ..+.|.+-+-.+.. ......|.||+- ....++-|||
T Consensus 75 ~~~cl~F~Y~m~G~~~g~L~V~~~~~~~~~~~~lw~~~g~~~~~W~~~~v~l~~-~~~~fqi~fe~~~g~~~~g~IAiDD 153 (161)
T smart00137 75 STHCLTFWYYMYGSGSGTLNVYVRENNGSQDTLLWSRSGTQGGQWLQAEVALSK-WQQPFQVVFEGTRGKGHSGYIALDD 153 (161)
T ss_pred CCeEEEEEEEecCCCCCEEEEEEEeCCCCCceEeEEEcCCCCCceEEEEEEecC-CCCcEEEEEEEEEcCCccceEEEeE
Confidence 467799998887532 347777765 4332 22322222 25679887766653 335677888874 3458999999
Q ss_pred ccccc
Q 042396 130 ISLQP 134 (472)
Q Consensus 130 v~l~~ 134 (472)
|+|.+
T Consensus 154 I~i~~ 158 (161)
T smart00137 154 ILLSN 158 (161)
T ss_pred EEeec
Confidence 99875
No 64
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=78.46 E-value=4.4 Score=38.88 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=30.2
Q ss_pred HHHHHHHHhhhcC-----CceEEEEeeccCcc-----ccccccccC-chHHHHHHH---HHHhhCCCCeEE
Q 042396 275 ADKRINSVTSRYK-----GQVIAWDVVNENLH-----FSFFESKLG-QNASGVFFN---RVHSLDGATTLF 331 (472)
Q Consensus 275 ~~~~i~~v~~ry~-----g~i~~WDVvNE~~~-----~~~~~~~~G-~~~~~~af~---~Ar~~dP~a~L~ 331 (472)
+.++|.-++.+|+ +.|..|-+=|||.. ...-...++ +|++.+.++ ++|++||+|+++
T Consensus 106 ~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~v~ 176 (239)
T PF12891_consen 106 MDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAKVF 176 (239)
T ss_dssp HHHHHHHHHHHH--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSEEE
T ss_pred HHHHHHHHHHHHhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEe
Confidence 4455666666654 46999999999952 111111122 456666655 456679999998
No 65
>PF09212 CBM27: Carbohydrate binding module 27; InterPro: IPR015295 This domain is found in carbohydrate binding proteins that bind to beta-1, 4-mannooligosaccharides, carob galactomannan, and konjac glucomannan, but not to cellulose (insoluble and soluble) or soluble birchwood xylan. The region adopts a beta sandwich structure comprising 13 beta strands with a single, small alpha-helix and a single metal atom []. ; PDB: 1OF3_A 1OF4_A 1OH4_A 1PMJ_X 1PMH_X.
Probab=78.14 E-value=24 Score=32.14 Aligned_cols=117 Identities=15% Similarity=0.229 Sum_probs=55.7
Q ss_pred CCCCCCCCCCeeEecc--eE-----EEEecCCCce---e-------------eeeEEE-eeecCCEEEEEEEEEecCC-C
Q 042396 17 NPELSHGLKGWSAFGN--AK-----IEQRESGGNN---S-------------CISQKV-YLEKNKFYTLSAWIQVSEG-A 71 (472)
Q Consensus 17 n~~FE~g~~gW~~~g~--~~-----~~~~~~~G~~---~-------------g~~~~~-~l~~G~~Y~~SawVk~~~g-~ 71 (472)
.-+|.+++.||...|. +. ++++...|+. . -+-..+ .|....+-+|.+++=-.++ +
T Consensus 10 ~~~f~~~~~g~~~~G~~q~~~~~~~i~~~~~~g~gaLklnv~~~~~~~W~E~ki~~~~~dls~~~~l~fDv~iP~~~~~~ 89 (170)
T PF09212_consen 10 DFSFDDSIEGWQNNGTWQASFSSPSISHSGDGGSGALKLNVDFDGNNDWDELKIFKNFEDLSEYNRLEFDVYIPKNEKYS 89 (170)
T ss_dssp ---SGGGGGGEEEEEEES-EEEEEEEEEESSGGGSEEEEEEEE-TTSTTEEEEECCEECCGCC--EEEEEEEEEHHCCSS
T ss_pred EecCCccccchhhCCccccccccCceeEeccCCCccEEEEeecCCCCCcchhhhhhhhhhcCCccEEEEEEEeCCCCCCC
Confidence 5688899999997663 22 3333333321 1 110011 4555566666655543332 3
Q ss_pred ccEEEEEEE-CCe--E------E---EeeeEEEeCCCeEEEEeeEeeCCC---ccEEEEEEeC--CCceeEEEcccccc
Q 042396 72 APVTAVFKT-ITG--F------K---HAGAAVAESKCWSMLKGGLSPDAS---GFAELYFESK--NTSVDIWVDSISLQ 133 (472)
Q Consensus 72 ~~~~~~~~~-~~~--~------~---~~~~~~v~~~~W~~l~g~~t~~~~---~~~~iy~e~~--~~~~~~yvDdv~l~ 133 (472)
..++..+.. +|- + . ....+++.+.+-.++.-++-++.. +.+.|.+-+. +-++.+|||||+|.
T Consensus 90 G~l~~~a~l~~gW~k~g~~~~~~~v~dle~v~i~Gk~Y~k~~v~i~~~~~~~~~~lvl~ivG~~~~Y~GpIYIDNV~L~ 168 (170)
T PF09212_consen 90 GSLKPYAALNPGWTKIGMDTTEINVKDLETVTIDGKGYKKIHVSIEFDSSKKATQLVLQIVGSNLDYNGPIYIDNVKLI 168 (170)
T ss_dssp SEE-EEEEECTTTEEECCCSCEEECCCSEEEEETTEEEEEEEEEEE--SSCCE-EEEEEEEEES--EEEEEEEEEEEEE
T ss_pred ccEEEEEEcCCChHHhccccccccccccceEEECCeEEEEEEEEEEccccCCCCcEEEEEccccccccCCEEEEeEEEe
Confidence 345544333 221 0 1 122345555667777777766543 3445555443 34579999999985
No 66
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=77.19 E-value=13 Score=31.97 Aligned_cols=13 Identities=31% Similarity=0.843 Sum_probs=11.1
Q ss_pred EEEEEEEEEecCC
Q 042396 58 FYTLSAWIQVSEG 70 (472)
Q Consensus 58 ~Y~~SawVk~~~g 70 (472)
.++||||||+.+.
T Consensus 2 ~fTv~aWv~~~~~ 14 (133)
T smart00560 2 SFTLEAWVKLESA 14 (133)
T ss_pred cEEEEEEEeeccc
Confidence 5899999999864
No 67
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=73.72 E-value=93 Score=34.49 Aligned_cols=169 Identities=18% Similarity=0.182 Sum_probs=74.5
Q ss_pred HHHHHHHhCCcEEEEeEeecCCCCCCCcccCCCC-----HHHH-HHHHHHHHHHHhhhcCCceEEEEeeccCcccccccc
Q 042396 234 AMLQFAKNHNIAVRGHNIFWDDPQYQPGWVNSLS-----PSDL-SKAADKRINSVTSRYKGQVIAWDVVNENLHFSFFES 307 (472)
Q Consensus 234 ~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~~~~~-----~~~~-~~~~~~~i~~v~~ry~g~i~~WDVvNE~~~~~~~~~ 307 (472)
.+++-|++.+=.++--.|-|. .|.|+..-. ...+ ...+.++|......|+=.|++-.+|||-..
T Consensus 116 ~L~~eAKkrNP~ikl~~L~W~----~PgW~~~g~~~~~~~~~~~a~Y~~~wl~ga~~~~gl~idYvg~~NEr~~------ 185 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGLPWG----FPGWVGNGWNWPYDNPQLTAYYVVSWLLGAKKTHGLDIDYVGIWNERGF------ 185 (669)
T ss_dssp HHHHHHHHH-TT-EEEEEES-----B-GGGGTTSS-TTSSHHHHHHHHHHHHHHHHHHH-----EE-S-TTS--------
T ss_pred hhHHHHHhhCCCCeEEEeccC----CCccccCCCCCcccchhhhhHHHHHHHHHHHHHhCCCceEechhhccCC------
Confidence 367777766644433447786 699997521 1222 233557777766777778999999999642
Q ss_pred ccCchHHHHHHHHHHh-hCCCCeEEEeccCCcccCCCCCCCHHHHHHHHHHHhcCcCCCCCcceeeeccccCC-CCHHHH
Q 042396 308 KLGQNASGVFFNRVHS-LDGATTLFMNDYNTIEDSRDGKATPAMYLQKLRQISEFPGNQNLRIGIGLESHFST-PNIPYM 385 (472)
Q Consensus 308 ~~G~~~~~~af~~Ar~-~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~DgIG~Q~H~~~-p~~~~~ 385 (472)
..+|++.--+...+ ..-++|++..|-.- + + -...++.. .+|. ++.|.||. |... .+...
T Consensus 186 --~~~~ik~lr~~l~~~gy~~vkiva~D~~~-~-~-----~~~~m~~D-~~l~------~avdvig~--HY~~~~~~~~- 246 (669)
T PF02057_consen 186 --DVNYIKWLRKALNSNGYNKVKIVAADNNW-E-S-----ISDDMLSD-PELR------NAVDVIGY--HYPGTYSSKN- 246 (669)
T ss_dssp ---HHHHHHHHHHHHHTT-TT-EEEEEEE-S-T-T-----HHHHHHH--HHHH------HH--EEEE--ES-TT---HH-
T ss_pred --ChhHHHHHHHHHhhccccceEEEEeCCCc-c-c-----hhhhhhcC-HHHH------hcccEecc--ccCCCCcHHH-
Confidence 23455332222222 34569999988331 1 1 01122211 1222 23499999 6654 22211
Q ss_pred HHHHHHHHhcCCCEEEeeeccC-CCchHHHHHHHHHHHHHcCCCeeEEEEEce
Q 042396 386 RASIDTLGATGLPIWLTEVDVQ-SSPNQAQYLEQILREAHAHPKVQGIVVWAA 437 (472)
Q Consensus 386 ~~~l~~~a~~g~pi~iTE~dv~-~~~~qA~~~~~~~~~~~s~p~v~gi~~Wg~ 437 (472)
....|+|||-+|=-.. ....-+..+.+.|..-+-...+...+.|.+
T Consensus 247 ------a~~~~K~lW~SE~~s~~~~~~g~g~~ar~ln~~yv~g~mT~~I~w~l 293 (669)
T PF02057_consen 247 ------AKLTGKPLWSSEDYSTFNYNVGAGCWARILNRNYVNGRMTAYINWPL 293 (669)
T ss_dssp ------HHHHT-EEEEEEEE-S-TTHHHHHHHHHHHHHHHHHH--SEEEEE-S
T ss_pred ------HHHhCCCeEEcCCcccccCcCchHHHHHHHHhhhhccceEEEEeehh
Confidence 1134999999994332 222223334444443333345778888874
No 68
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=73.34 E-value=31 Score=35.18 Aligned_cols=92 Identities=10% Similarity=0.099 Sum_probs=57.0
Q ss_pred chHHHHHHHHHhCCcEEEEeEe--ecCCCCCCCcccCCCC------------HHH-HHHHHHHHHHHHhhhcCCceEEEE
Q 042396 230 SASDAMLQFAKNHNIAVRGHNI--FWDDPQYQPGWVNSLS------------PSD-LSKAADKRINSVTSRYKGQVIAWD 294 (472)
Q Consensus 230 ~~~D~~v~~a~~~gi~vrGH~l--vW~~~~~~P~W~~~~~------------~~~-~~~~~~~~i~~v~~ry~g~i~~WD 294 (472)
+..-++++.|+++||++--+.- -|+. |.+..... .++ +.+.+...++++++||+-.+.-+|
T Consensus 138 Div~El~~A~rk~Glk~G~Y~S~~dw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfD 213 (346)
T PF01120_consen 138 DIVGELADACRKYGLKFGLYYSPWDWHH----PDYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFD 213 (346)
T ss_dssp -HHHHHHHHHHHTT-EEEEEEESSSCCC----TTTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEE
T ss_pred CHHHHHHHHHHHcCCeEEEEecchHhcC----cccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEec
Confidence 5678899999999999854332 4443 32222110 012 345888999999999943455556
Q ss_pred eeccCccccccccccCchHHHHHHHHHHhhCCCCeEEEe
Q 042396 295 VVNENLHFSFFESKLGQNASGVFFNRVHSLDGATTLFMN 333 (472)
Q Consensus 295 VvNE~~~~~~~~~~~G~~~~~~af~~Ar~~dP~a~L~~N 333 (472)
..... ....--....++.+|+..|++.+.-+
T Consensus 214 g~~~~--------~~~~~~~~~~~~~i~~~qp~~ii~~r 244 (346)
T PF01120_consen 214 GGWPD--------PDEDWDSAELYNWIRKLQPDVIINNR 244 (346)
T ss_dssp STTSC--------CCTHHHHHHHHHHHHHHSTTSEEECC
T ss_pred CCCCc--------cccccCHHHHHHHHHHhCCeEEEecc
Confidence 55543 11111248889999999998877643
No 69
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=72.57 E-value=19 Score=31.36 Aligned_cols=90 Identities=13% Similarity=0.255 Sum_probs=56.5
Q ss_pred HHHHHHH-ccccceee--C--CCCCCc--ccccCCCCCCcchHHHHHHHHHhCCcEEEEeEe-ecCCC--CCCCcccCC-
Q 042396 197 AYQNWFT-SRFKVTAF--E--DEMKWY--STEASPGREDYSASDAMLQFAKNHNIAVRGHNI-FWDDP--QYQPGWVNS- 265 (472)
Q Consensus 197 ~~~~~~~-~~fn~vt~--e--n~~kW~--~~ep~~g~~~~~~~D~~v~~a~~~gi~vrGH~l-vW~~~--~~~P~W~~~- 265 (472)
++.+.++ .+-|++++ . +.+-|. .+.+.-.....+.+-++|+.|.++||+|-+..- .|+.. ..-|+|+..
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPeW~~~~ 83 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPEWFVRD 83 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCceeeEC
Confidence 4555554 58888887 2 222222 232322223456778899999999999976643 35543 246888741
Q ss_pred --------------------CCHHHHHHHHHHHHHHHhhhcC
Q 042396 266 --------------------LSPSDLSKAADKRINSVTSRYK 287 (472)
Q Consensus 266 --------------------~~~~~~~~~~~~~i~~v~~ry~ 287 (472)
++ ...++.+...|+++++||.
T Consensus 84 ~~G~~~~~~~~~~~~~~~~c~n-s~Y~e~~~~~i~Ei~~~y~ 124 (132)
T PF14871_consen 84 ADGRPMRGERFGYPGWYTCCLN-SPYREFLLEQIREILDRYD 124 (132)
T ss_pred CCCCCcCCCCcCCCCceecCCC-ccHHHHHHHHHHHHHHcCC
Confidence 11 2355788899999999994
No 70
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=71.95 E-value=22 Score=36.90 Aligned_cols=92 Identities=15% Similarity=0.203 Sum_probs=58.9
Q ss_pred chHHHHHHHHHhCCcEEEE-e-EeecCCCCCCCcccCC-------CC---HHHHHHHHHHHHHHHhhhcCCceEEEEeec
Q 042396 230 SASDAMLQFAKNHNIAVRG-H-NIFWDDPQYQPGWVNS-------LS---PSDLSKAADKRINSVTSRYKGQVIAWDVVN 297 (472)
Q Consensus 230 ~~~D~~v~~a~~~gi~vrG-H-~lvW~~~~~~P~W~~~-------~~---~~~~~~~~~~~i~~v~~ry~g~i~~WDVvN 297 (472)
+.+-.+++.|+++||++-- | .+-|+. |.|... .+ ..+..+.+..+|++++++|+..+.-+|...
T Consensus 128 Div~el~~A~rk~Glk~G~Y~S~~DW~~----p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~ 203 (384)
T smart00812 128 DLVGELADAVRKRGLKFGLYHSLFDWFN----PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGW 203 (384)
T ss_pred chHHHHHHHHHHcCCeEEEEcCHHHhCC----CccccccccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 5788899999999999832 2 235654 444211 11 122333348999999999998666667543
Q ss_pred cCccccccccccCch-HHHHHHHHHHhhCCCC-eEEEec
Q 042396 298 ENLHFSFFESKLGQN-ASGVFFNRVHSLDGAT-TLFMND 334 (472)
Q Consensus 298 E~~~~~~~~~~~G~~-~~~~af~~Ar~~dP~a-~L~~Nd 334 (472)
+.. +.. -....++.+|+..|++ .+++|+
T Consensus 204 ~~~---------~~~~~~~~l~~~~~~~qP~~~~vvvn~ 233 (384)
T smart00812 204 EAP---------DDYWRSKEFLAWLYNLSPVKDTVVVND 233 (384)
T ss_pred CCc---------cchhcHHHHHHHHHHhCCCCceEEEEc
Confidence 211 111 2567888999999987 455664
No 71
>smart00606 CBD_IV Cellulose Binding Domain Type IV.
Probab=71.31 E-value=50 Score=27.97 Aligned_cols=78 Identities=14% Similarity=0.215 Sum_probs=38.6
Q ss_pred eEE-EeeecCCEEEEEEEEEecCCCccEEEEEEEC---CeEEEeeeEEEe-CC---CeEEEEeeEeeCCCccEEEEEEeC
Q 042396 48 SQK-VYLEKNKFYTLSAWIQVSEGAAPVTAVFKTI---TGFKHAGAAVAE-SK---CWSMLKGGLSPDASGFAELYFESK 119 (472)
Q Consensus 48 ~~~-~~l~~G~~Y~~SawVk~~~g~~~~~~~~~~~---~~~~~~~~~~v~-~~---~W~~l~g~~t~~~~~~~~iy~e~~ 119 (472)
.++ +.+.....|.|++.+....+.. +++++.| |.. ++++.++ .+ .|+.++....+.. +.-.||+...
T Consensus 43 ~y~~vd~~~~g~~~i~~~~as~~~~~--~i~v~~d~~~G~~--~~~~~~p~tg~~~~~~~~~~~v~~~~-G~~~l~~~~~ 117 (129)
T smart00606 43 AYKDVDFGSSGAYTFTARVASGNAGG--SIELRLDSPTGTL--VGTVDVPSTGGWQTYQTVSATVTLPA-GVHDVYLVFK 117 (129)
T ss_pred EEEeEecCCCCceEEEEEEeCCCCCc--eEEEEECCCCCcE--EEEEEeCCCCCCccCEEEEEEEccCC-ceEEEEEEEE
Confidence 344 5666668999998774443333 4444443 433 2333333 33 4556655444332 4334544332
Q ss_pred CCceeEEEcccc
Q 042396 120 NTSVDIWVDSIS 131 (472)
Q Consensus 120 ~~~~~~yvDdv~ 131 (472)
... .+.||-+.
T Consensus 118 ~~~-~~~ld~~~ 128 (129)
T smart00606 118 GGN-YFNIDWFR 128 (129)
T ss_pred CCC-cEEEEEEE
Confidence 221 16677654
No 72
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=68.78 E-value=6.3 Score=27.83 Aligned_cols=22 Identities=23% Similarity=0.520 Sum_probs=18.9
Q ss_pred cEEEEEecCCCCcccCcceeee
Q 042396 155 NVRIQAVDKQGKPLQNANISIE 176 (472)
Q Consensus 155 ~~~~~v~~~~g~p~~~~~v~v~ 176 (472)
.++|++.|++|+|++++...+.
T Consensus 16 ~ltVt~kda~G~pv~n~~f~l~ 37 (47)
T PF05688_consen 16 PLTVTVKDANGNPVPNAPFTLT 37 (47)
T ss_pred EEEEEEECCCCCCcCCceEEEE
Confidence 6889999999999999876664
No 73
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=64.26 E-value=1.5e+02 Score=29.20 Aligned_cols=212 Identities=13% Similarity=0.252 Sum_probs=108.7
Q ss_pred CCCHHHHHHHHccccceeeCCCCCCcccccCCCCCCcchHHHHHHHHHhCCcEEEEeEe---------ecCCC--CCCCc
Q 042396 193 LTNTAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHNIAVRGHNI---------FWDDP--QYQPG 261 (472)
Q Consensus 193 ~~~~~~~~~~~~~fn~vt~en~~kW~~~ep~~g~~~~~~~D~~v~~a~~~gi~vrGH~l---------vW~~~--~~~P~ 261 (472)
+.|..+.++..++|..++.+ ..+ .|.++-...-.=+.-.+++|..+.+..- .|... ...|+
T Consensus 31 l~d~~~~~i~~~~f~llVVD--ps~------~g~~~~~~~~eelr~~~~gg~~pIAYlsIg~ae~yR~Ywd~~w~~~~p~ 102 (300)
T COG2342 31 LQDAYINEILNSPFDLLVVD--PSY------CGPFNTPWTIEELRTKADGGVKPIAYLSIGEAESYRFYWDKYWLTGRPD 102 (300)
T ss_pred cccchHHHHhcCCCcEEEEe--ccc------cCCCCCcCcHHHHHHHhcCCeeEEEEEechhhhhhhhHhhhhhhcCCcc
Confidence 44667778888999999983 211 2222222223345667778844433211 12221 14688
Q ss_pred ccCCCCH------------HHHHHHHHHHHHHHhh-hcCCceEEEEeeccCcccccccc-ccCc-------hHHHHHHHH
Q 042396 262 WVNSLSP------------SDLSKAADKRINSVTS-RYKGQVIAWDVVNENLHFSFFES-KLGQ-------NASGVFFNR 320 (472)
Q Consensus 262 W~~~~~~------------~~~~~~~~~~i~~v~~-ry~g~i~~WDVvNE~~~~~~~~~-~~G~-------~~~~~af~~ 320 (472)
|+-.-+| ++-++.+..+..++.. -|.|- .-|+|-.- ..-.|.+ ..|. .++.+.-.+
T Consensus 103 wLg~edP~W~Gny~VkYW~~eWkdii~~~l~rL~d~GfdGv--yLD~VD~y-~Y~~~~~~~~~~~~~k~m~~~i~~i~~~ 179 (300)
T COG2342 103 WLGEEDPEWPGNYAVKYWEPEWKDIIRSYLDRLIDQGFDGV--YLDVVDAY-WYVEWNDRETGVNAAKKMVKFIAAIAEY 179 (300)
T ss_pred cccCCCCCCCCCceeeccCHHHHHHHHHHHHHHHHccCceE--EEeeechH-HHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 8864332 3456666677776665 35551 12444221 0000111 1221 356666788
Q ss_pred HHhhCCCCeEEEe-ccCCcccCCCCCCCHHHHHHHHHHHhcCcCCCCCcceeeeccccCC---C--CHHHHHHHHHHHHh
Q 042396 321 VHSLDGATTLFMN-DYNTIEDSRDGKATPAMYLQKLRQISEFPGNQNLRIGIGLESHFST---P--NIPYMRASIDTLGA 394 (472)
Q Consensus 321 Ar~~dP~a~L~~N-dy~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~DgIG~Q~H~~~---p--~~~~~~~~l~~~a~ 394 (472)
+|++.|.-.++.| +=.+++..+ ..++.-++ .|. -...-++. | +.+..++.|+++.+
T Consensus 180 ~ra~~~~~~Vi~qng~~l~d~~~-------------a~l~~~~~-~~~----~vE~~~~d~~~~~~~~~~~e~~Lr~l~~ 241 (300)
T COG2342 180 ARAANPLFRVIPQNGAELFDADG-------------AGLLPRLG-FGV----AVETVFYDDERPLESADTFEEYLRKLCR 241 (300)
T ss_pred HHhcCCcEEEEecccHhhcCccc-------------cchhhccc-cce----EEEEEEecCccCCCchhhHHHHHHHHHh
Confidence 8999999666554 222222211 01111011 111 11122221 2 23456799999999
Q ss_pred cCCCEEEeeeccCCCchHHHHHHHHHHHHHcCCCeeEEEEEce
Q 042396 395 TGLPIWLTEVDVQSSPNQAQYLEQILREAHAHPKVQGIVVWAA 437 (472)
Q Consensus 395 ~g~pi~iTE~dv~~~~~qA~~~~~~~~~~~s~p~v~gi~~Wg~ 437 (472)
+|+||.+-|++....+..-.-+++++.... +.|+...-.
T Consensus 242 ~G~~V~vieY~~d~~~~~~~r~~~~~~ktr----~~g~~p~~~ 280 (300)
T COG2342 242 LGKPVYVIEYALDPTDPRESRLEDLFEKTR----AEGVYPYVA 280 (300)
T ss_pred cCCcEEEEEecCCCCchhhHHHHHHHHHhh----ccceEEeee
Confidence 999999999988765322244555555443 456655543
No 74
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=56.42 E-value=15 Score=29.54 Aligned_cols=29 Identities=10% Similarity=0.264 Sum_probs=23.5
Q ss_pred cccEEEEEecCCCCcccCcceeeeeecCC
Q 042396 153 KTNVRIQAVDKQGKPLQNANISIEQKQLR 181 (472)
Q Consensus 153 k~~~~~~v~~~~g~p~~~~~v~v~~~~~~ 181 (472)
...++++|.|.+|.|+++..|++.....+
T Consensus 19 ~~~i~v~v~D~~Gnpv~~~~V~f~~~~~~ 47 (92)
T smart00634 19 AITLTATVTDANGNPVAGQEVTFTTPSGG 47 (92)
T ss_pred cEEEEEEEECCCCCCcCCCEEEEEECCCc
Confidence 45688999999999999998877755444
No 75
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=55.46 E-value=84 Score=35.90 Aligned_cols=99 Identities=13% Similarity=0.255 Sum_probs=65.0
Q ss_pred HccccceeeCCCCCCcccccCCCCCCcchHHHHHHHHHhCCcEEEEeEee-cCCCCCCCcccCCCCHHHHHHHHHHHHHH
Q 042396 203 TSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHNIAVRGHNIF-WDDPQYQPGWVNSLSPSDLSKAADKRINS 281 (472)
Q Consensus 203 ~~~fn~vt~en~~kW~~~ep~~g~~~~~~~D~~v~~a~~~gi~vrGH~lv-W~~~~~~P~W~~~~~~~~~~~~~~~~i~~ 281 (472)
..++|+++.- . +-..+...++|.+.||-|-=-..+ ||. .| ..++.++.+.+.|+.
T Consensus 332 ~~n~N~vRts--H-------------yP~~~~~ydLcDelGllV~~Ea~~~~~~---~~------~~~~~~k~~~~~i~~ 387 (808)
T COG3250 332 EANMNSVRTS--H-------------YPNSEEFYDLCDELGLLVIDEAMIETHG---MP------DDPEWRKEVSEEVRR 387 (808)
T ss_pred HcCCCEEEec--C-------------CCCCHHHHHHHHHhCcEEEEecchhhcC---CC------CCcchhHHHHHHHHH
Confidence 3589999872 2 223477999999999987544332 332 22 234456778899999
Q ss_pred HhhhcCC--ceEEEEeeccCccccccccccCchHHHHHHHHHHhhCCCCeEEEec
Q 042396 282 VTSRYKG--QVIAWDVVNENLHFSFFESKLGQNASGVFFNRVHSLDGATTLFMND 334 (472)
Q Consensus 282 v~~ry~g--~i~~WDVvNE~~~~~~~~~~~G~~~~~~af~~Ar~~dP~a~L~~Nd 334 (472)
++.|-+. .|..|=+-||..+++ -...+.++.++.+|+-.+.+-+
T Consensus 388 mver~knHPSIiiWs~gNE~~~g~---------~~~~~~~~~k~~d~~r~~~~~~ 433 (808)
T COG3250 388 MVERDRNHPSIIIWSLGNESGHGS---------NHWALYRWFKASDPTRPVQYEG 433 (808)
T ss_pred HHHhccCCCcEEEEeccccccCcc---------ccHHHHHHHhhcCCccceeccC
Confidence 9998776 799999999976522 2233455555556655444433
No 76
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=53.40 E-value=16 Score=28.18 Aligned_cols=29 Identities=14% Similarity=0.343 Sum_probs=20.0
Q ss_pred EEEEEecCCCCcccCcceeeeeecCCcce
Q 042396 156 VRIQAVDKQGKPLQNANISIEQKQLRFPF 184 (472)
Q Consensus 156 ~~~~v~~~~g~p~~~~~v~v~~~~~~f~f 184 (472)
+.-+|.|++|+|+++|.|.+.........
T Consensus 2 I~G~V~d~~g~pv~~a~V~l~~~~~~~~~ 30 (82)
T PF13620_consen 2 ISGTVTDATGQPVPGATVTLTDQDGGTVY 30 (82)
T ss_dssp EEEEEEETTSCBHTT-EEEET--TTTECC
T ss_pred EEEEEEcCCCCCcCCEEEEEEEeeCCCEE
Confidence 45678899999999999988755544433
No 77
>PRK11354 kil FtsZ inhibitor protein; Reviewed
Probab=51.39 E-value=34 Score=26.17 Aligned_cols=51 Identities=18% Similarity=0.309 Sum_probs=35.0
Q ss_pred EEeCCCeEEEEe-eEeeCCC--ccEEEEEEeCCCceeEEEccccccccchhhhhhhhhhhhhccccccEEEEE-ecCCCC
Q 042396 91 VAESKCWSMLKG-GLSPDAS--GFAELYFESKNTSVDIWVDSISLQPFTQEEWRSQQHQSIEKNHKTNVRIQA-VDKQGK 166 (472)
Q Consensus 91 ~v~~~~W~~l~g-~~t~~~~--~~~~iy~e~~~~~~~~yvDdv~l~~~s~~~w~~~a~~~Ie~~Rk~~~~~~v-~~~~g~ 166 (472)
.|++|--++.+| +|++++. ..-.+|+.+ -||++|-.|..|+| +|..|.
T Consensus 15 ~V~PG~~v~~~grty~ASAN~~~r~~LYl~~----------------------------~~e~~~i~d~~IeVyL~~~G~ 66 (73)
T PRK11354 15 CVTPGDYVLHEGRTYIASANNIKKRKLYIRT----------------------------LTTKTCITDCMIKVFLGRDGL 66 (73)
T ss_pred ccCCceEEEEcCcEEEEEechhhCceEEEEe----------------------------eeEEEEEeeeEEEEEEcCCCC
Confidence 455677777777 4666665 344667654 25677788888888 488898
Q ss_pred ccc
Q 042396 167 PLQ 169 (472)
Q Consensus 167 p~~ 169 (472)
|+.
T Consensus 67 Plt 69 (73)
T PRK11354 67 PVK 69 (73)
T ss_pred ccc
Confidence 885
No 78
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=50.40 E-value=99 Score=29.89 Aligned_cols=93 Identities=14% Similarity=0.220 Sum_probs=54.9
Q ss_pred cchHHHHHHHHHhCCcEEEEeEeecCCCCCCCcccC------CCCHHHHHHHHHHHHHH---HhhhcCCceEEEEeeccC
Q 042396 229 YSASDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVN------SLSPSDLSKAADKRINS---VTSRYKGQVIAWDVVNEN 299 (472)
Q Consensus 229 ~~~~D~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~~------~~~~~~~~~~~~~~i~~---v~~ry~g~i~~WDVvNE~ 299 (472)
.....+.|..|++||+.+=.|+- .|+=.. .++++++++.+..-|.. ++...+.++.+-- |
T Consensus 41 p~~M~~tv~lA~~~gV~iGAHPs-------yPD~~gFGRr~m~~s~~el~~~v~yQigaL~~~a~~~g~~l~hVK----P 109 (242)
T PF03746_consen 41 PETMRRTVRLAKEHGVAIGAHPS-------YPDREGFGRRSMDISPEELRDSVLYQIGALQAIAAAEGVPLHHVK----P 109 (242)
T ss_dssp HHHHHHHHHHHHHTT-EEEEE----------S-TTTTT-S-----HHHHHHHHHHHHHHHHHHHHHTT--EEEE------
T ss_pred HHHHHHHHHHHHHcCCEeccCCC-------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeeEEec----c
Confidence 35678899999999999999973 444321 35788888887766665 5667888887643 2
Q ss_pred cccccccccc-CchHHHHHHHHHHhhCCCCeEEEe
Q 042396 300 LHFSFFESKL-GQNASGVFFNRVHSLDGATTLFMN 333 (472)
Q Consensus 300 ~~~~~~~~~~-G~~~~~~af~~Ar~~dP~a~L~~N 333 (472)
|+..+.... .++......+++++.+|+..|+.-
T Consensus 110 -HGALYn~~~~d~~lA~~i~~ai~~~~~~l~l~~~ 143 (242)
T PF03746_consen 110 -HGALYNMAAKDEELARAIAEAIKAFDPDLPLYGL 143 (242)
T ss_dssp --HHHHHHHHH-HHHHHHHHHHHHHH-TT-EEEEE
T ss_pred -cHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEEc
Confidence 322222221 235667778999999999998853
No 79
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=50.19 E-value=27 Score=34.39 Aligned_cols=14 Identities=36% Similarity=0.764 Sum_probs=11.9
Q ss_pred cCCCEEEeeeccCC
Q 042396 395 TGLPIWLTEVDVQS 408 (472)
Q Consensus 395 ~g~pi~iTE~dv~~ 408 (472)
..+|||+||++.++
T Consensus 205 ~sKpIwftE~Gcpa 218 (299)
T PF13547_consen 205 QSKPIWFTEYGCPA 218 (299)
T ss_pred CCcceEEEecCCch
Confidence 36899999999875
No 80
>PRK09936 hypothetical protein; Provisional
Probab=50.07 E-value=2.7e+02 Score=27.67 Aligned_cols=185 Identities=14% Similarity=0.207 Sum_probs=104.2
Q ss_pred CCCCHHHHHHH----HccccceeeCCCCCCcccccCCCCCCcch----HHHHHHHHHhCCcEEEEeEeecCCCCCCCccc
Q 042396 192 ILTNTAYQNWF----TSRFKVTAFEDEMKWYSTEASPGREDYSA----SDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWV 263 (472)
Q Consensus 192 ~~~~~~~~~~~----~~~fn~vt~en~~kW~~~ep~~g~~~~~~----~D~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~ 263 (472)
.+.+..+++++ ..+|+.+.. .|..+ |.-+|.. .-+.++.|.+.||+|+-... .-|+|+
T Consensus 34 ~~~~~qWq~~~~~~~~~G~~tLiv----QWt~y----G~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~------~Dp~y~ 99 (296)
T PRK09936 34 QVTDTQWQGLWSQLRLQGFDTLVV----QWTRY----GDADFGGQRGWLAKRLAAAQQAGLKLVVGLY------ADPEFF 99 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEE----Eeeec----cCCCcccchHHHHHHHHHHHHcCCEEEEccc------CChHHH
Confidence 34455566554 458998876 67665 2225654 34578899999999964321 357877
Q ss_pred CCC--CHHHHHHHHHHHHHH-------HhhhcCCceEEEEeeccCccccccccccCchHHHHHHHHHHhhCC--CCeEEE
Q 042396 264 NSL--SPSDLSKAADKRINS-------VTSRYKGQVIAWDVVNENLHFSFFESKLGQNASGVFFNRVHSLDG--ATTLFM 332 (472)
Q Consensus 264 ~~~--~~~~~~~~~~~~i~~-------v~~ry~g~i~~WDVvNE~~~~~~~~~~~G~~~~~~af~~Ar~~dP--~a~L~~ 332 (472)
... +++.+...+..+... +..+.+-.|..|=+==|... --|.+.--.+-+....+.+.+.-| +..|.|
T Consensus 100 q~~~~d~~~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElDd-~~W~~~~rR~~L~~~L~~~~~~l~~~~kPv~I 178 (296)
T PRK09936 100 MHQKQDGAALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELDD-LNWRDEARRQPLLTWLNAAQRLIDVSAKPVHI 178 (296)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccch-hcccCHHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence 654 444444444443333 22333335667776666532 234433223444455555555544 668888
Q ss_pred eccCCcccCCCCCCCHHHHHHHHHHHhcCcCCCCCc----ceeeeccccCCCCHHHHHHHHHH-HH-hcC--CCEEEeee
Q 042396 333 NDYNTIEDSRDGKATPAMYLQKLRQISEFPGNQNLR----IGIGLESHFSTPNIPYMRASIDT-LG-ATG--LPIWLTEV 404 (472)
Q Consensus 333 Ndy~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~----DgIG~Q~H~~~p~~~~~~~~l~~-~a-~~g--~pi~iTE~ 404 (472)
.-|..-. .++..+-..++.+.. .|+. ||+|.. |. ++..-++-++. +. ++| ....|-|+
T Consensus 179 Say~~g~------~sP~~l~~Wl~~l~~----~~l~V~~QDGvGv~-~l---~~~~~~~Ylqa~L~~~~g~~~~~iI~Ea 244 (296)
T PRK09936 179 SAFFAGN------MSPDGYRQWLEQLKA----TGVNVWVQDGSGVD-KL---TAEQRERYLQASLDCQSSAPASGIVYEL 244 (296)
T ss_pred EeecccC------CChHHHHHHHHHHhh----cCCeEEEEcCCCcc-cC---CHHHHHHHHHhhhhhhhCCCcceehHhh
Confidence 8886311 135667667777777 6665 999995 22 22222333333 33 344 44667776
Q ss_pred c
Q 042396 405 D 405 (472)
Q Consensus 405 d 405 (472)
=
T Consensus 245 F 245 (296)
T PRK09936 245 F 245 (296)
T ss_pred h
Confidence 5
No 81
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=49.46 E-value=2.3e+02 Score=28.92 Aligned_cols=104 Identities=15% Similarity=0.129 Sum_probs=60.5
Q ss_pred CchHHHHHHHHHHhhCCCCeEEEeccCCcccCCCCCCCHHHHHHHHHHHhcCcCCCCCcceeeeccccCC------C---
Q 042396 310 GQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLRQISEFPGNQNLRIGIGLESHFST------P--- 380 (472)
Q Consensus 310 G~~~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~DgIG~Q~H~~~------p--- 380 (472)
.++ +...|+.+|+..|+..++.|=+-. ...+ .....+.+.++.+.+ |++-+ |+.. |
T Consensus 104 ~~~-~~~~~~~vr~~~p~~p~~aNl~~~-~~~~---~~~~~~~~~~~~~~a--------dal~l--~l~~~qe~~~p~g~ 168 (352)
T PRK05437 104 DPE-LADSFSVVRKVAPDGLLFANLGAV-QLYG---YGVEEAQRAVEMIEA--------DALQI--HLNPLQELVQPEGD 168 (352)
T ss_pred Chh-hHHHHHHHHHHCCCceEEeecCcc-ccCC---CCHHHHHHHHHhcCC--------CcEEE--eCccchhhcCCCCc
Confidence 456 889999999999999999885432 1111 124445454444332 44433 5532 2
Q ss_pred -CHHHHHHHHHHHHh-cCCCEEEeeeccCCCchHHHHHHHHHHHHHcCCCeeEEEEEc
Q 042396 381 -NIPYMRASIDTLGA-TGLPIWLTEVDVQSSPNQAQYLEQILREAHAHPKVQGIVVWA 436 (472)
Q Consensus 381 -~~~~~~~~l~~~a~-~g~pi~iTE~dv~~~~~qA~~~~~~~~~~~s~p~v~gi~~Wg 436 (472)
+...+.+.|+.+.+ .++||.+-|.+-... .+..+.+ .+ -+|++|.+=|
T Consensus 169 ~~f~~~le~i~~i~~~~~vPVivK~~g~g~s---~~~a~~l----~~-~Gvd~I~Vsg 218 (352)
T PRK05437 169 RDFRGWLDNIAEIVSALPVPVIVKEVGFGIS---KETAKRL----AD-AGVKAIDVAG 218 (352)
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEeCCCCCc---HHHHHHH----HH-cCCCEEEECC
Confidence 23334566776654 489999998764322 1222222 22 3788888855
No 82
>PRK07534 methionine synthase I; Validated
Probab=47.85 E-value=68 Score=32.59 Aligned_cols=82 Identities=7% Similarity=0.054 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHhhCCC---CeEEEeccCCccc---C-CC--CCCCHHHHHHHHHHHhcCcCCCCCcceeeeccccCC-CC
Q 042396 312 NASGVFFNRVHSLDGA---TTLFMNDYNTIED---S-RD--GKATPAMYLQKLRQISEFPGNQNLRIGIGLESHFST-PN 381 (472)
Q Consensus 312 ~~~~~af~~Ar~~dP~---a~L~~Ndy~~~~~---~-~~--~~~~~~~~~~~~~~l~~~~~~~G~~DgIG~Q~H~~~-p~ 381 (472)
++...+.+.||++.-. -.++..+-+.+.. + ++ .......|..+++.|.+ .|+ |.|.+ .+ |+
T Consensus 85 ~l~~~av~lAr~a~~~~~~~~~VaGsIGP~g~~l~~~~~~~~~e~~~~~~~qi~~l~~----~gv-D~l~~----ET~p~ 155 (336)
T PRK07534 85 ELNRAAAEIAREVADKAGRKVIVAGSVGPTGEIMEPMGALTHALAVEAFHEQAEGLKA----GGA-DVLWV----ETISA 155 (336)
T ss_pred HHHHHHHHHHHHHHHhcCCccEEEEecCCCccccCCCCCCCHHHHHHHHHHHHHHHHh----CCC-CEEEE----eccCC
Confidence 4567888888887421 1344444333211 1 10 00123445566666655 554 87766 34 88
Q ss_pred HHHHHHHHHHHHhcCCCEEEe
Q 042396 382 IPYMRASIDTLGATGLPIWLT 402 (472)
Q Consensus 382 ~~~~~~~l~~~a~~g~pi~iT 402 (472)
+.+++..++.....++|++|+
T Consensus 156 l~E~~a~~~~~~~~~~Pv~vS 176 (336)
T PRK07534 156 PEEIRAAAEAAKLAGMPWCGT 176 (336)
T ss_pred HHHHHHHHHHHHHcCCeEEEE
Confidence 888888888888889999987
No 83
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=46.58 E-value=38 Score=35.82 Aligned_cols=63 Identities=16% Similarity=0.291 Sum_probs=43.5
Q ss_pred CCCcchHHHHHHHHHhCCcEEE------EeEeecCCCC---CCCcccCC--------CC--HHHHHHHHHHHHHHHhhhc
Q 042396 226 REDYSASDAMLQFAKNHNIAVR------GHNIFWDDPQ---YQPGWVNS--------LS--PSDLSKAADKRINSVTSRY 286 (472)
Q Consensus 226 ~~~~~~~D~~v~~a~~~gi~vr------GH~lvW~~~~---~~P~W~~~--------~~--~~~~~~~~~~~i~~v~~ry 286 (472)
+|.-+.+-.+|++|+-+||+|. ||+.-|+... ..|.|-.. ++ .+.+-+.+.+.+.+|.+-|
T Consensus 246 vYT~eDv~evV~yarlRGIRVlpEfD~PgHt~sWg~g~~~fl~p~~~~~~~~~~~gplnP~~n~tydvls~i~~dv~evF 325 (542)
T KOG2499|consen 246 VYTREDVSEVVEYARLRGIRVLPEFDTPGHTGSWGPGYPDFLTPCWSSFEVQPPFGPLNPTNNHTYDVLSEIFEDVSEVF 325 (542)
T ss_pred eecHHHHHHHHHHHHhccceeeecccCCcccccccCCCCcccCCcccccccCCCCcCCCCCchhHHHHHHHHHHHHHHhC
Confidence 4444567779999999999985 9999997531 12334321 22 2567788888888888866
Q ss_pred CC
Q 042396 287 KG 288 (472)
Q Consensus 287 ~g 288 (472)
.+
T Consensus 326 p~ 327 (542)
T KOG2499|consen 326 PD 327 (542)
T ss_pred cH
Confidence 53
No 84
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=45.84 E-value=2.1e+02 Score=28.06 Aligned_cols=20 Identities=5% Similarity=0.255 Sum_probs=10.4
Q ss_pred CHHHHHHHHHHHHhcCCCEEE
Q 042396 381 NIPYMRASIDTLGATGLPIWL 401 (472)
Q Consensus 381 ~~~~~~~~l~~~a~~g~pi~i 401 (472)
+.+.+.+....+++ ++||.|
T Consensus 107 ~~~~i~~yf~~v~~-~lpv~i 126 (279)
T cd00953 107 PEEWLIKYFTDISS-PYPTFI 126 (279)
T ss_pred CHHHHHHHHHHHHh-cCCEEE
Confidence 34445555555555 555555
No 85
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=43.92 E-value=81 Score=31.20 Aligned_cols=47 Identities=17% Similarity=0.362 Sum_probs=34.6
Q ss_pred HHHHHHhcCcCCCCCcceeeeccccCCCCHHHHHHHHHHHHhcCCCEEEeeeccCC
Q 042396 353 QKLRQISEFPGNQNLRIGIGLESHFSTPNIPYMRASIDTLGATGLPIWLTEVDVQS 408 (472)
Q Consensus 353 ~~~~~l~~~~~~~G~~DgIG~Q~H~~~p~~~~~~~~l~~~a~~g~pi~iTE~dv~~ 408 (472)
..++.|.+ .| .|-+|+. ..|++.+.++.++...++++|.||+ +.+..
T Consensus 138 ~rie~l~~----ag-~Dlla~E---Tip~i~Ea~Aiv~l~~~~s~p~wIS-fT~~d 184 (300)
T COG2040 138 PRIEALNE----AG-ADLLACE---TLPNITEAEAIVQLVQEFSKPAWIS-FTLND 184 (300)
T ss_pred HHHHHHHh----CC-CcEEeec---ccCChHHHHHHHHHHHHhCCceEEE-EEeCC
Confidence 45666766 66 3777763 2388888888888888889999998 66654
No 86
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=43.76 E-value=1.1e+02 Score=26.03 Aligned_cols=38 Identities=16% Similarity=0.283 Sum_probs=31.9
Q ss_pred EEEEeeEeeCCCccEEEEEEeCCCceeEEEccccccccc
Q 042396 98 SMLKGGLSPDASGFAELYFESKNTSVDIWVDSISLQPFT 136 (472)
Q Consensus 98 ~~l~g~~t~~~~~~~~iy~e~~~~~~~~yvDdv~l~~~s 136 (472)
.+++|.|+++.++.-.+++.+ +.+..++||+-.+....
T Consensus 48 ~~~~G~~~~~~~G~y~f~~~~-~d~~~l~idg~~vid~~ 85 (145)
T PF07691_consen 48 VRWTGYFKPPETGTYTFSLTS-DDGARLWIDGKLVIDNW 85 (145)
T ss_dssp EEEEEEEEESSSEEEEEEEEE-SSEEEEEETTEEEEECS
T ss_pred EEEEEEEecccCceEEEEEEe-cccEEEEECCEEEEcCC
Confidence 468999999999988998986 67889999999886543
No 87
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=43.00 E-value=43 Score=34.07 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=35.3
Q ss_pred EeeecCCEEEEEEEEEecC-CCccEEEEEEE-CCeEEEeeeEEEeCCCeEEEEeeE
Q 042396 51 VYLEKNKFYTLSAWIQVSE-GAAPVTAVFKT-ITGFKHAGAAVAESKCWSMLKGGL 104 (472)
Q Consensus 51 ~~l~~G~~Y~~SawVk~~~-g~~~~~~~~~~-~~~~~~~~~~~v~~~~W~~l~g~~ 104 (472)
+.|+.|++|+|..-+|.-- |.-.+..++.. ++.. .+-+|.|+.|+|++
T Consensus 101 ~~LelG~dYefkv~lkaR~pG~~hvh~m~Nv~~~Gp------iiGPg~w~~I~Gs~ 150 (399)
T TIGR03079 101 GPLEIGRDYEFEVTLQARIPGRHHMHAMLNVKDAGP------IAGPGKWMNITGSW 150 (399)
T ss_pred eEeecCCceeEEEEEeeccCCcccceeEEEeccCCC------CcCCceEEEeecch
Confidence 4799999999999888753 55567777755 4322 13378999999975
No 88
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=42.71 E-value=3.2e+02 Score=27.17 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=13.4
Q ss_pred CCCCcchHHHHHHHHHhCCc
Q 042396 225 GREDYSASDAMLQFAKNHNI 244 (472)
Q Consensus 225 g~~~~~~~D~~v~~a~~~gi 244 (472)
|..|++...++++|+.++|+
T Consensus 20 g~vD~~a~~~lv~~li~~Gv 39 (299)
T COG0329 20 GSVDEEALRRLVEFLIAAGV 39 (299)
T ss_pred CCcCHHHHHHHHHHHHHcCC
Confidence 66666666667777766663
No 89
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=41.45 E-value=3.8e+02 Score=26.93 Aligned_cols=225 Identities=11% Similarity=0.102 Sum_probs=103.9
Q ss_pred HHHHc-cccceeeCCCCCCcccccCCCCCCcchHHHHHHHHHhCCcEEEEeEeecCCCCCCCc-ccCCCCH-HHHHHHHH
Q 042396 200 NWFTS-RFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHNIAVRGHNIFWDDPQYQPG-WVNSLSP-SDLSKAAD 276 (472)
Q Consensus 200 ~~~~~-~fn~vt~en~~kW~~~ep~~g~~~~~~~D~~v~~a~~~gi~vrGH~lvW~~~~~~P~-W~~~~~~-~~~~~~~~ 276 (472)
.++++ +-|.|+. +.+.|+. ..|..+..+.+.||-|.--. ..|. -+...+| ...-..+.
T Consensus 60 ~~l~~LgiNtIRV------Y~vdp~~------nHd~CM~~~~~aGIYvi~Dl-------~~p~~sI~r~~P~~sw~~~l~ 120 (314)
T PF03198_consen 60 PLLKELGINTIRV------YSVDPSK------NHDECMSAFADAGIYVILDL-------NTPNGSINRSDPAPSWNTDLL 120 (314)
T ss_dssp HHHHHHT-SEEEE------S---TTS--------HHHHHHHHHTT-EEEEES--------BTTBS--TTS------HHHH
T ss_pred HHHHHcCCCEEEE------EEeCCCC------CHHHHHHHHHhCCCEEEEec-------CCCCccccCCCCcCCCCHHHH
Confidence 34443 7899998 7777766 35999999999999886432 1331 1222222 12334455
Q ss_pred HHHHHHhhhcCC--ceEEEEeeccCccccccccccCchHHHHHHHHHHhh----CCCCeEEEeccCCcccCCCCCCCHHH
Q 042396 277 KRINSVTSRYKG--QVIAWDVVNENLHFSFFESKLGQNASGVFFNRVHSL----DGATTLFMNDYNTIEDSRDGKATPAM 350 (472)
Q Consensus 277 ~~i~~v~~ry~g--~i~~WDVvNE~~~~~~~~~~~G~~~~~~af~~Ar~~----dP~a~L~~Ndy~~~~~~~~~~~~~~~ 350 (472)
++...++..+++ .+-..=+-||.++...= ..-.-|++.+.|-+|+. .. -++-++ |..-+... .
T Consensus 121 ~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~--t~aap~vKAavRD~K~Yi~~~~~-R~IPVG-YsaaD~~~-------~ 189 (314)
T PF03198_consen 121 DRYFAVIDAFAKYDNTLGFFAGNEVINDASN--TNAAPYVKAAVRDMKAYIKSKGY-RSIPVG-YSAADDAE-------I 189 (314)
T ss_dssp HHHHHHHHHHTT-TTEEEEEEEESSS-STT---GGGHHHHHHHHHHHHHHHHHSSS-----EE-EEE---TT-------T
T ss_pred HHHHHHHHHhccCCceEEEEecceeecCCCC--cccHHHHHHHHHHHHHHHHhcCC-CCCcee-EEccCChh-------H
Confidence 666666665553 58888899998764311 11235777776665542 22 112222 44322111 1
Q ss_pred HHHHHHHHhcCcCCCCCc----ceeeeccccCC-C-CH--HHHHHHHHHHHhcCCCEEEeeeccCCCc-----hHHHHHH
Q 042396 351 YLQKLRQISEFPGNQNLR----IGIGLESHFST-P-NI--PYMRASIDTLGATGLPIWLTEVDVQSSP-----NQAQYLE 417 (472)
Q Consensus 351 ~~~~~~~l~~~~~~~G~~----DgIG~Q~H~~~-p-~~--~~~~~~l~~~a~~g~pi~iTE~dv~~~~-----~qA~~~~ 417 (472)
...+.++|. .|.. |=.|+-.+--- + +. ......++.|+.+.+||.++|++-...+ ++...|.
T Consensus 190 r~~~a~Yl~-----Cg~~~~~iDf~g~N~Y~WCg~Stf~~SGy~~l~~~f~~y~vPvffSEyGCn~~~pR~f~ev~aly~ 264 (314)
T PF03198_consen 190 RQDLANYLN-----CGDDDERIDFFGLNSYEWCGDSTFETSGYDRLTKEFSNYSVPVFFSEYGCNTVTPRTFTEVPALYS 264 (314)
T ss_dssp HHHHHHHTT-----BTT-----S-EEEEE----SS--HHHHSHHHHHHHHTT-SS-EEEEEE---SSSS---THHHHHTS
T ss_pred HHHHHHHhc-----CCCcccccceeeeccceecCCCccccccHHHHHHHhhCCCCCeEEcccCCCCCCCccchHhHHhhC
Confidence 122233332 3432 54555332211 2 22 2467888899999999999999987652 3444454
Q ss_pred HHHHHHHcCCCeeEEEEEceecCCCCCccccccCCC----CcchHHHHHHHHH
Q 042396 418 QILREAHAHPKVQGIVVWAAWKPSGCYRMCLTDNNF----KNLATGDVVDKLL 466 (472)
Q Consensus 418 ~~~~~~~s~p~v~gi~~Wg~w~~~~~~~~~L~d~d~----~pKPa~~~~~~li 466 (472)
.-|+..|| |=..+...... .+.||..-+. ++.+-|..|++-+
T Consensus 265 ~~Mt~v~S-----GGivYEy~~e~--n~yGlV~~~~~~~~~~~~Df~~L~~~~ 310 (314)
T PF03198_consen 265 PEMTDVWS-----GGIVYEYFQEA--NNYGLVEISGDGSVTTLDDFDNLKSQY 310 (314)
T ss_dssp HHHHTTEE-----EEEES-SB--S--SS--SEEE-TTS-EEE-THHHHHHHHH
T ss_pred ccchhhee-----ceEEEEEeccC--CceEEEEEcCCCCeeecHhHHHHHHHH
Confidence 44443333 44455443322 2567774332 2456677666544
No 90
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=41.12 E-value=26 Score=35.73 Aligned_cols=64 Identities=19% Similarity=0.337 Sum_probs=46.9
Q ss_pred CCcchHHHHHHHHHhCCcEEEEeEeecCCCCCCCcccCCCCHHHHHHHHHHHHHHHhhhcCCceEEEEeecc
Q 042396 227 EDYSASDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVNSLSPSDLSKAADKRINSVTSRYKGQVIAWDVVNE 298 (472)
Q Consensus 227 ~~~~~~D~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~~~~~~~~~~~~~~~~i~~v~~ry~g~i~~WDVvNE 298 (472)
-.+.-.+++++.|+++||++. |+|+. -.|+.-..+....+.+.|...+..+..++ .+..|| .||
T Consensus 249 ~q~~F~e~~L~~ake~~I~~v---l~~P~--V~~~~~~~~~~~~~~~~w~~~i~~l~~~~--~~~~~d-mn~ 312 (345)
T PF07611_consen 249 TQFFFLEKFLKLAKENGIPVV---LWWPK--VSPPYEKLYKELKVYESWWPIIKKLAKEY--GIPFLD-MNE 312 (345)
T ss_pred hHHHHHHHHHHHHHHcCCcEE---EEEec--cCHHHHHHHHhhchhhHHHHHHHHHHhcC--CceEec-ccC
Confidence 344567899999999999985 67763 23444333444567788999999999888 577788 677
No 91
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=40.89 E-value=89 Score=31.17 Aligned_cols=47 Identities=21% Similarity=0.429 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCcCCCCCcceeeeccccCC-CCHHHHHHHHHHHHhc--CCCEEEeeeccC
Q 042396 351 YLQKLRQISEFPGNQNLRIGIGLESHFST-PNIPYMRASIDTLGAT--GLPIWLTEVDVQ 407 (472)
Q Consensus 351 ~~~~~~~l~~~~~~~G~~DgIG~Q~H~~~-p~~~~~~~~l~~~a~~--g~pi~iTE~dv~ 407 (472)
|.++++.|.+ .|+ |.|-+ .+ |++.+++..++..... ++|++|+ +.+.
T Consensus 142 ~~~q~~~l~~----~gv-D~i~~----ET~~~~~E~~~~~~~~~~~~~~~pv~is-~~~~ 191 (304)
T PRK09485 142 HRPRIEALAE----AGA-DLLAC----ETIPNLDEAEALVELLKEEFPGVPAWLS-FTLR 191 (304)
T ss_pred HHHHHHHHhh----CCC-CEEEE----eccCCHHHHHHHHHHHHHhcCCCcEEEE-EEeC
Confidence 3445665555 554 77765 33 7788888888888755 8999987 3443
No 92
>PRK12569 hypothetical protein; Provisional
Probab=40.81 E-value=2e+02 Score=27.88 Aligned_cols=91 Identities=13% Similarity=0.174 Sum_probs=61.8
Q ss_pred chHHHHHHHHHhCCcEEEEeEeecCCCCCCCccc------CCCCHHHHHHHHHHHHHH---HhhhcCCceEEEEeeccCc
Q 042396 230 SASDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWV------NSLSPSDLSKAADKRINS---VTSRYKGQVIAWDVVNENL 300 (472)
Q Consensus 230 ~~~D~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~------~~~~~~~~~~~~~~~i~~---v~~ry~g~i~~WDVvNE~~ 300 (472)
...++.|+.|++||+.+=.|+- .|+=. -.++++++.+.+..-|.. ++...+.++.+-- |
T Consensus 47 ~~M~~tv~lA~~~~V~IGAHPs-------yPD~~gFGRr~m~~s~~el~~~v~yQigaL~~~~~~~g~~l~hVK----P- 114 (245)
T PRK12569 47 NIMRRTVELAKAHGVGIGAHPG-------FRDLVGFGRRHINASPQELVNDVLYQLGALREFARAHGVRLQHVK----P- 114 (245)
T ss_pred HHHHHHHHHHHHcCCEeccCCC-------CCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeeEEec----C-
Confidence 5678999999999999999963 44432 136889988888777755 4566667776543 2
Q ss_pred ccccccccc-CchHHHHHHHHHHhhCCCCeEEE
Q 042396 301 HFSFFESKL-GQNASGVFFNRVHSLDGATTLFM 332 (472)
Q Consensus 301 ~~~~~~~~~-G~~~~~~af~~Ar~~dP~a~L~~ 332 (472)
|+-.+.... .++......+++++.+|+.+|+.
T Consensus 115 HGALYN~~~~d~~la~av~~ai~~~~~~l~l~~ 147 (245)
T PRK12569 115 HGALYMHAARDEALARLLVEALARLDPLLILYC 147 (245)
T ss_pred CHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEe
Confidence 322222222 23556677788899999988875
No 93
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=40.67 E-value=1.3e+02 Score=27.83 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=12.8
Q ss_pred cCCEEEEEEEEEecC
Q 042396 55 KNKFYTLSAWIQVSE 69 (472)
Q Consensus 55 ~G~~Y~~SawVk~~~ 69 (472)
.-..+++++|||+..
T Consensus 29 ~l~~fTv~~Wv~~~~ 43 (201)
T cd00152 29 PLQAFTLCLWVYTDL 43 (201)
T ss_pred ChhhEEEEEEEEecC
Confidence 567899999999975
No 94
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=39.85 E-value=2e+02 Score=28.12 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=10.5
Q ss_pred CCCCcchHHHHHHHHHhCCc
Q 042396 225 GREDYSASDAMLQFAKNHNI 244 (472)
Q Consensus 225 g~~~~~~~D~~v~~a~~~gi 244 (472)
|..|++...++++++.++|+
T Consensus 17 g~id~~~~~~~i~~l~~~Gv 36 (289)
T PF00701_consen 17 GSIDEDALKRLIDFLIEAGV 36 (289)
T ss_dssp SSB-HHHHHHHHHHHHHTTS
T ss_pred cCcCHHHHHHHHHHHHHcCC
Confidence 45555555555555555554
No 95
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=39.77 E-value=23 Score=29.08 Aligned_cols=23 Identities=13% Similarity=0.414 Sum_probs=18.1
Q ss_pred cccEEEEEecCCCCcccCcceee
Q 042396 153 KTNVRIQAVDKQGKPLQNANISI 175 (472)
Q Consensus 153 k~~~~~~v~~~~g~p~~~~~v~v 175 (472)
...++++|.|.+|+||+|..|..
T Consensus 24 ~~tltatV~D~~gnpv~g~~V~f 46 (100)
T PF02369_consen 24 TNTLTATVTDANGNPVPGQPVTF 46 (100)
T ss_dssp -EEEEEEEEETTSEB-TS-EEEE
T ss_pred cEEEEEEEEcCCCCCCCCCEEEE
Confidence 45788999999999999999887
No 96
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=38.26 E-value=81 Score=33.09 Aligned_cols=82 Identities=15% Similarity=0.240 Sum_probs=55.1
Q ss_pred HHHHHHHHHhCC-cEEEEeEeecCCCCCCC-ccc-CCCCHHHHHHHHHHHHHHHhhhcCC-ceEEEEeeccCcccccccc
Q 042396 232 SDAMLQFAKNHN-IAVRGHNIFWDDPQYQP-GWV-NSLSPSDLSKAADKRINSVTSRYKG-QVIAWDVVNENLHFSFFES 307 (472)
Q Consensus 232 ~D~~v~~a~~~g-i~vrGH~lvW~~~~~~P-~W~-~~~~~~~~~~~~~~~i~~v~~ry~g-~i~~WDVvNE~~~~~~~~~ 307 (472)
.|.+.+||.... .-+|=-++||+.- +- .+= ..-+.+-|-+.|.+|++.+++-|.| ||+ |- |..
T Consensus 338 ~dpl~dFA~~~S~~YLRREvIvWGDc--VKLRYG~~peDsP~LW~~M~~Yt~~~A~iF~G~RiD-----NC--HST---- 404 (423)
T PF14701_consen 338 ADPLVDFASPDSRAYLRREVIVWGDC--VKLRYGSKPEDSPFLWKHMKEYTELMAKIFHGFRID-----NC--HST---- 404 (423)
T ss_pred CchhhhhcCCcccceEEEEEEecCce--eeecCCCCCCCCHHHHHHHHHHHHHHHHhcCeeeee-----cC--CCC----
Confidence 578889987443 4567778899852 11 000 0124567899999999999999999 665 43 211
Q ss_pred ccCchHHHHHHHHHHhhCCCC
Q 042396 308 KLGQNASGVFFNRVHSLDGAT 328 (472)
Q Consensus 308 ~~G~~~~~~af~~Ar~~dP~a 328 (472)
.-...+...+.||++.|+.
T Consensus 405 --PlhVaeylLd~AR~v~PnL 423 (423)
T PF14701_consen 405 --PLHVAEYLLDAARKVNPNL 423 (423)
T ss_pred --cHHHHHHHHHHHHhhCCCC
Confidence 1234566778999999973
No 97
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=37.60 E-value=4.1e+02 Score=29.32 Aligned_cols=28 Identities=7% Similarity=0.060 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeeccCc
Q 042396 273 KAADKRINSVTSRYKGQVIAWDVVNENL 300 (472)
Q Consensus 273 ~~~~~~i~~v~~ry~g~i~~WDVvNE~~ 300 (472)
+.++.|++..+..--+.++-.|-.|+..
T Consensus 96 ~vv~~~v~~a~~~Gidv~Rifd~lnd~~ 123 (596)
T PRK14042 96 DVVRAFVKLAVNNGVDVFRVFDALNDAR 123 (596)
T ss_pred HHHHHHHHHHHHcCCCEEEEcccCcchH
Confidence 5566788887777777888889999874
No 98
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=37.47 E-value=61 Score=33.02 Aligned_cols=92 Identities=17% Similarity=0.225 Sum_probs=53.4
Q ss_pred HHHHHHHhCCcEEEEeEee-cCCCCCCCcccCCC-CH-HHHHHHHHHHHHHHhhhcCCceEEEEeeccCccc-ccccccc
Q 042396 234 AMLQFAKNHNIAVRGHNIF-WDDPQYQPGWVNSL-SP-SDLSKAADKRINSVTSRYKGQVIAWDVVNENLHF-SFFESKL 309 (472)
Q Consensus 234 ~~v~~a~~~gi~vrGH~lv-W~~~~~~P~W~~~~-~~-~~~~~~~~~~i~~v~~ry~g~i~~WDVvNE~~~~-~~~~~~~ 309 (472)
..++.|.+||++|.|-.++ |. ..++|+..+ .. ++.+..+.+-+-+++..|+ ++.|-|-=|.... ....+.+
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~---~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yG--fDGw~iN~E~~~~~~~~~~~l 124 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWT---GQVEWLEDFLKKDEDGSFPVADKLVEVAKYYG--FDGWLINIETELGDAEKAKRL 124 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCC---CchHHHHHHhccCcccchHHHHHHHHHHHHhC--CCceEeeeeccCCcHHHHHHH
Confidence 3788999999999995432 32 123455432 22 4455666677777777774 6666655554320 1000000
Q ss_pred CchHHHHHHHHHHhhCCCCeEE
Q 042396 310 GQNASGVFFNRVHSLDGATTLF 331 (472)
Q Consensus 310 G~~~~~~af~~Ar~~dP~a~L~ 331 (472)
.++++...+.+++..|+.+++
T Consensus 125 -~~F~~~L~~~~~~~~~~~~v~ 145 (339)
T cd06547 125 -IAFLRYLKAKLHENVPGSLVI 145 (339)
T ss_pred -HHHHHHHHHHHhhcCCCcEEE
Confidence 135566667777777777775
No 99
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=36.96 E-value=4.6e+02 Score=27.82 Aligned_cols=106 Identities=9% Similarity=0.117 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeeccCccccccccccCchHHHHHHHHHHhhCCCCeEEEeccCCcccCCCCCCCHHHHH
Q 042396 273 KAADKRINSVTSRYKGQVIAWDVVNENLHFSFFESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYL 352 (472)
Q Consensus 273 ~~~~~~i~~v~~ry~g~i~~WDVvNE~~~~~~~~~~~G~~~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~ 352 (472)
..+..+|+..+..--+.|.-.|-.|+.. -+..+.+.||+..-.+.+.+. |.. .+ ....+.|+
T Consensus 96 dvv~~~v~~A~~~Gvd~irif~~lnd~~------------n~~~~v~~ak~~G~~v~~~i~-~t~--~p---~~~~~~~~ 157 (448)
T PRK12331 96 DVVESFVQKSVENGIDIIRIFDALNDVR------------NLETAVKATKKAGGHAQVAIS-YTT--SP---VHTIDYFV 157 (448)
T ss_pred hhHHHHHHHHHHCCCCEEEEEEecCcHH------------HHHHHHHHHHHcCCeEEEEEE-eec--CC---CCCHHHHH
Confidence 3455677776666556777778788762 155567777777654444332 211 11 12355666
Q ss_pred HHHHHHhcCcCCCCCcceeeeccccCCCCHHHHHHHHHHHH-hcCCCEEE
Q 042396 353 QKLRQISEFPGNQNLRIGIGLESHFSTPNIPYMRASIDTLG-ATGLPIWL 401 (472)
Q Consensus 353 ~~~~~l~~~~~~~G~~DgIG~Q~H~~~p~~~~~~~~l~~~a-~~g~pi~i 401 (472)
++++.+.+ .|+ |.|.+--..+.-.+.++.+.+..+. .+++||.+
T Consensus 158 ~~a~~l~~----~Ga-d~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi~~ 202 (448)
T PRK12331 158 KLAKEMQE----MGA-DSICIKDMAGILTPYVAYELVKRIKEAVTVPLEV 202 (448)
T ss_pred HHHHHHHH----cCC-CEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 77777766 554 4444432223234555666666553 34566544
No 100
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=36.69 E-value=4.6e+02 Score=27.46 Aligned_cols=107 Identities=10% Similarity=0.080 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeeccCccccccccccCchHHHHHHHHHHhhCCCCeEEEeccCCcccCCCCCCCHHHHH
Q 042396 273 KAADKRINSVTSRYKGQVIAWDVVNENLHFSFFESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYL 352 (472)
Q Consensus 273 ~~~~~~i~~v~~ry~g~i~~WDVvNE~~~~~~~~~~~G~~~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~ 352 (472)
+.++.||+..+..=-+-++-+|-.|-+. -++.+.+++|+.--.++..+. |.+ . +..+...|+
T Consensus 98 DvVe~Fv~ka~~nGidvfRiFDAlND~R------------Nl~~ai~a~kk~G~h~q~~i~-YT~-s----PvHt~e~yv 159 (472)
T COG5016 98 DVVEKFVEKAAENGIDVFRIFDALNDVR------------NLKTAIKAAKKHGAHVQGTIS-YTT-S----PVHTLEYYV 159 (472)
T ss_pred HHHHHHHHHHHhcCCcEEEechhccchh------------HHHHHHHHHHhcCceeEEEEE-ecc-C----CcccHHHHH
Confidence 4567777777666555677788888763 367788888887667776664 432 1 233467788
Q ss_pred HHHHHHhcCcCCCCCcceeeeccccCCCCHHHHHHHHHHHH-hcCCCEEEe
Q 042396 353 QKLRQISEFPGNQNLRIGIGLESHFSTPNIPYMRASIDTLG-ATGLPIWLT 402 (472)
Q Consensus 353 ~~~~~l~~~~~~~G~~DgIG~Q~H~~~p~~~~~~~~l~~~a-~~g~pi~iT 402 (472)
++.++|.+ -|+ |-|.+----+.-++....+.+..+. .+++||.+-
T Consensus 160 ~~akel~~----~g~-DSIciKDmaGlltP~~ayelVk~iK~~~~~pv~lH 205 (472)
T COG5016 160 ELAKELLE----MGV-DSICIKDMAGLLTPYEAYELVKAIKKELPVPVELH 205 (472)
T ss_pred HHHHHHHH----cCC-CEEEeecccccCChHHHHHHHHHHHHhcCCeeEEe
Confidence 88888887 665 5554421111123333444444443 455666543
No 101
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=36.62 E-value=2.8e+02 Score=26.73 Aligned_cols=91 Identities=20% Similarity=0.243 Sum_probs=58.9
Q ss_pred chHHHHHHHHHhCCcEEEEeEeecCCCCCCCcccC------CCCHHHHHHHHHHHHHHHh---hhcCCceEEEEeeccCc
Q 042396 230 SASDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVN------SLSPSDLSKAADKRINSVT---SRYKGQVIAWDVVNENL 300 (472)
Q Consensus 230 ~~~D~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~~------~~~~~~~~~~~~~~i~~v~---~ry~g~i~~WDVvNE~~ 300 (472)
...++.|++|++||+.+=.|+ ..|+-.. .++++++.+.+.=-|-.+. .-=++++.+-- |
T Consensus 44 ~~M~rtV~lA~e~gV~IGAHP-------gyPDl~gFGRr~m~~~~~e~~a~~lYQiGAL~a~~~a~G~~~~hVK----p- 111 (252)
T COG1540 44 LTMRRTVRLAKENGVAIGAHP-------GYPDLVGFGRREMALSPEELYAQVLYQIGALQAFARAQGGVVQHVK----P- 111 (252)
T ss_pred HHHHHHHHHHHHcCCeeccCC-------CCccccccCccccCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEec----c-
Confidence 468999999999999999996 3565442 2578888877665555543 33444565432 2
Q ss_pred cccccccccCchHH-HHHHHHHHhhCCCCeEEE
Q 042396 301 HFSFFESKLGQNAS-GVFFNRVHSLDGATTLFM 332 (472)
Q Consensus 301 ~~~~~~~~~G~~~~-~~af~~Ar~~dP~a~L~~ 332 (472)
|+-.+.+...+.-+ ....+++++.||+..|+.
T Consensus 112 HGALYN~~a~D~~la~av~~av~~~dp~L~l~~ 144 (252)
T COG1540 112 HGALYNQAAKDRALADAVAEAVAAFDPSLILMG 144 (252)
T ss_pred cHHHHHHhhcCHHHHHHHHHHHHHhCCCceEEe
Confidence 33333333334344 455578888999999984
No 102
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=35.95 E-value=4.5e+02 Score=31.54 Aligned_cols=109 Identities=15% Similarity=0.090 Sum_probs=47.8
Q ss_pred HHHHHHHHhhhcCCceEEEEeeccCccccccccccCchHHHHHHHHHHhhCCCCeEEEeccC-CcccCCCCCCCHHHHHH
Q 042396 275 ADKRINSVTSRYKGQVIAWDVVNENLHFSFFESKLGQNASGVFFNRVHSLDGATTLFMNDYN-TIEDSRDGKATPAMYLQ 353 (472)
Q Consensus 275 ~~~~i~~v~~ry~g~i~~WDVvNE~~~~~~~~~~~G~~~~~~af~~Ar~~dP~a~L~~Ndy~-~~~~~~~~~~~~~~~~~ 353 (472)
++.|++..+.+-=+.++-.|-.|..- -+..+.+++|++.-.+...|. |. .+.++.......+-|++
T Consensus 627 v~~f~~~~~~~GidifrifD~lN~~~------------n~~~~~~~~~~~g~~~~~~i~-yt~~~~d~~~~~~~l~y~~~ 693 (1143)
T TIGR01235 627 VKYFVKQAAQGGIDIFRVFDSLNWVE------------NMRVGMDAVAEAGKVVEAAIC-YTGDILDPARPKYDLKYYTN 693 (1143)
T ss_pred HHHHHHHHHHcCCCEEEECccCcCHH------------HHHHHHHHHHHcCCEEEEEEE-EeccCCCcCCCCCCHHHHHH
Confidence 44555555555555566666666542 345555666655433222222 11 01112111223444556
Q ss_pred HHHHHhcCcCCCCCcceeeeccccCCCCHHHHHHHHHHHH-hcCCCEEE
Q 042396 354 KLRQISEFPGNQNLRIGIGLESHFSTPNIPYMRASIDTLG-ATGLPIWL 401 (472)
Q Consensus 354 ~~~~l~~~~~~~G~~DgIG~Q~H~~~p~~~~~~~~l~~~a-~~g~pi~i 401 (472)
+++.|.+ .|+ |.|++--..+.-.+..+.+.+..+. .+++||++
T Consensus 694 ~ak~l~~----~Ga-d~I~ikDt~Gll~P~~~~~Lv~~lk~~~~~pi~~ 737 (1143)
T TIGR01235 694 LAVELEK----AGA-HILGIKDMAGLLKPAAAKLLIKALREKTDLPIHF 737 (1143)
T ss_pred HHHHHHH----cCC-CEEEECCCcCCcCHHHHHHHHHHHHHhcCCeEEE
Confidence 6666655 443 4443322222223344444444443 23555544
No 103
>COG2160 AraA L-arabinose isomerase [Carbohydrate transport and metabolism]
Probab=35.81 E-value=1e+02 Score=31.99 Aligned_cols=64 Identities=22% Similarity=0.400 Sum_probs=45.9
Q ss_pred ceeeeccccCC-CCHHHHHHH----HHHHH-hcCCCEEEeeeccCCCchHHHHHHHHHHHHHcCCCeeEEEEEc
Q 042396 369 IGIGLESHFST-PNIPYMRAS----IDTLG-ATGLPIWLTEVDVQSSPNQAQYLEQILREAHAHPKVQGIVVWA 436 (472)
Q Consensus 369 DgIG~Q~H~~~-p~~~~~~~~----l~~~a-~~g~pi~iTE~dv~~~~~qA~~~~~~~~~~~s~p~v~gi~~Wg 436 (472)
=+||.| |++. +.+.++++. .+.++ ...+|+.|.=.++-++ ++-..++.+.+-..+.|.|++.|-
T Consensus 11 FviGsq-~lyg~e~le~v~~~a~~iV~~ln~~~~~P~kiv~k~l~tS---~d~i~~~~~~an~~d~cag~Itwm 80 (497)
T COG2160 11 FVIGSQ-HLYGEETLEQVEQHAEGIVDQLNEEAKLPYKIVLKPLITS---PDEITAICREANYDDRCAGVITWL 80 (497)
T ss_pred EEecch-hhcCHHHHHHHHHHHHHHHHHhhhhcCCCeEEEeccccCC---HHHHHHHHHHhccCccceeEEEEE
Confidence 478888 5554 555555444 44444 4578999998888765 566777788777788999999996
No 104
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=35.46 E-value=28 Score=32.09 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=19.7
Q ss_pred ccEEEEEecCCCCcccCcceeeeeec
Q 042396 154 TNVRIQAVDKQGKPLQNANISIEQKQ 179 (472)
Q Consensus 154 ~~~~~~v~~~~g~p~~~~~v~v~~~~ 179 (472)
--+..+|.|.+|+||++|.|.|=|..
T Consensus 30 l~l~G~V~D~~g~Pv~~A~veiWqad 55 (183)
T PF00775_consen 30 LVLHGRVIDTDGKPVPGALVEIWQAD 55 (183)
T ss_dssp EEEEEEEEETTSSB-TTEEEEEEE--
T ss_pred EEEEEEEECCCCCCCCCcEEEEEecC
Confidence 35678899999999999999986543
No 105
>PRK12999 pyruvate carboxylase; Reviewed
Probab=35.34 E-value=3.8e+02 Score=32.19 Aligned_cols=110 Identities=12% Similarity=0.074 Sum_probs=57.6
Q ss_pred HHHHHHHhhhcCCceEEEEeeccCccccccccccCchHHHHHHHHHHhhCCCCeEEEeccCCcccCCCCCCCHHHHHHHH
Q 042396 276 DKRINSVTSRYKGQVIAWDVVNENLHFSFFESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKL 355 (472)
Q Consensus 276 ~~~i~~v~~ry~g~i~~WDVvNE~~~~~~~~~~~G~~~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~~ 355 (472)
++||+..+..--+.|+-.|=.|+. +-+..+.+.+|++.=-+.+-++--+.+.++.......+.|++++
T Consensus 630 ~~~i~~a~~~Gid~~rifd~lnd~------------~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a 697 (1146)
T PRK12999 630 RAFVREAAAAGIDVFRIFDSLNWV------------ENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLA 697 (1146)
T ss_pred HHHHHHHHHcCCCEEEEeccCChH------------HHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHH
Confidence 345555555545556556655542 24777888888874333344431111122322223466677778
Q ss_pred HHHhcCcCCCCCcceeeeccccCCCCHHHHHHHHHHHH-hcCCCEEEe
Q 042396 356 RQISEFPGNQNLRIGIGLESHFSTPNIPYMRASIDTLG-ATGLPIWLT 402 (472)
Q Consensus 356 ~~l~~~~~~~G~~DgIG~Q~H~~~p~~~~~~~~l~~~a-~~g~pi~iT 402 (472)
+.+.+ .|+ |.|.+--..+.-.+..+.+.+..+. .+++||++-
T Consensus 698 ~~l~~----~Ga-~~i~ikDt~G~l~P~~~~~lv~~lk~~~~ipi~~H 740 (1146)
T PRK12999 698 KELEK----AGA-HILAIKDMAGLLKPAAAYELVSALKEEVDLPIHLH 740 (1146)
T ss_pred HHHHH----cCC-CEEEECCccCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 88777 664 4444432223234555666666654 346776654
No 106
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=35.22 E-value=4.5e+02 Score=26.21 Aligned_cols=54 Identities=11% Similarity=0.131 Sum_probs=31.1
Q ss_pred CCCCCcchHHHHHHHHHhCCcE---EEEeEeecCCCCCCCcccCCCCHHHHHHHHHHHHHHHhhhcCCceE
Q 042396 224 PGREDYSASDAMLQFAKNHNIA---VRGHNIFWDDPQYQPGWVNSLSPSDLSKAADKRINSVTSRYKGQVI 291 (472)
Q Consensus 224 ~g~~~~~~~D~~v~~a~~~gi~---vrGH~lvW~~~~~~P~W~~~~~~~~~~~~~~~~i~~v~~ry~g~i~ 291 (472)
.|..|++...++++++.++|+. +.|++ -... .++ .+.-.+-++.+++.-+||+.
T Consensus 23 ~g~iD~~~l~~lv~~li~~Gv~Gi~v~Gst---------GE~~-~Lt----~eEr~~v~~~~~~~~~grvp 79 (309)
T cd00952 23 TDTVDLDETARLVERLIAAGVDGILTMGTF---------GECA-TLT----WEEKQAFVATVVETVAGRVP 79 (309)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccc---------ccch-hCC----HHHHHHHHHHHHHHhCCCCC
Confidence 4677777777778877777653 22322 1111 122 35556666667766666653
No 107
>PF13115 YtkA: YtkA-like
Probab=35.12 E-value=45 Score=26.08 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=19.7
Q ss_pred cEEEEEecCCCCcccCcceeeeeecC
Q 042396 155 NVRIQAVDKQGKPLQNANISIEQKQL 180 (472)
Q Consensus 155 ~~~~~v~~~~g~p~~~~~v~v~~~~~ 180 (472)
.++|+ .+.+|+||.+|.|.+.....
T Consensus 23 ~i~v~-~~~~g~pv~~a~V~~~~~m~ 47 (86)
T PF13115_consen 23 TITVT-VDQGGKPVTDADVQFEIWMP 47 (86)
T ss_pred EEEEE-ECCCCCCCCCCEEEEEEEeC
Confidence 56777 78999999999887765444
No 108
>PF02383 Syja_N: SacI homology domain; InterPro: IPR002013 Synaptic vesicles are recycled with remarkable speed and precision in nerve terminals. A major recycling pathway involves clathrin-mediated endocytosis at endocytic zones located around sites of release. Different 'accessory' proteins linked to this pathway have been shown to alter the shape and composition of lipid membranes, to modify membrane-coat protein interactions, and to influence actin polymerisation. These include the GTPase dynamin, the lysophosphatidic acid acyl transferase endophilin, and the phosphoinositide phosphatase synaptojanin []. The recessive suppressor of secretory defect in yeast Golgi and yeast actin function belongs to this family. This protein may be involved in the coordination of the activities of the secretory pathway and the actin cytoskeleton. Human synaptojanin which may be localised on coated endocytic intermediates in nerve terminals also belongs to this family.; GO: 0042578 phosphoric ester hydrolase activity; PDB: 3LWT_X.
Probab=34.79 E-value=95 Score=31.07 Aligned_cols=80 Identities=15% Similarity=0.336 Sum_probs=38.9
Q ss_pred cEEEEeE-eecCCCCCCCcccC--C--C--CHHHHHHHHHHHHHHHhhhcCCceEEEEeeccCccccccccccCchHHHH
Q 042396 244 IAVRGHN-IFWDDPQYQPGWVN--S--L--SPSDLSKAADKRINSVTSRYKGQVIAWDVVNENLHFSFFESKLGQNASGV 316 (472)
Q Consensus 244 i~vrGH~-lvW~~~~~~P~W~~--~--~--~~~~~~~~~~~~i~~v~~ry~g~i~~WDVvNE~~~~~~~~~~~G~~~~~~ 316 (472)
+.+||-+ |+|. |.|+.-. . + +.+.-..++.+|...+..+| |.|..-+.++.- -++..+..
T Consensus 216 vqiRGSVPl~W~---Q~~~~~~~p~i~i~~~~~~~~~af~kHf~~L~~~Y-~~i~~VNLl~~~---------~~E~~L~~ 282 (319)
T PF02383_consen 216 VQIRGSVPLFWS---QPPNLKYKPPIKISRSSEENQPAFKKHFDELLKRY-GPIIIVNLLDKK---------GSEGKLSE 282 (319)
T ss_dssp EEEEE---SBS--------SSS----------HHHHHHHHHHHHHHHHHH-SEEEEEEE---S---------S---HHHH
T ss_pred eEecCCCCceeE---cCCCCCCCCCeEEEeccchhHHHHHHHHHHHHHhc-CceEEEEcccCC---------CCHHHHHH
Confidence 3478874 4565 3343321 1 1 35677899999999999999 778877777321 12334555
Q ss_pred HHHHHHhh-----CCCCeEEEeccC
Q 042396 317 FFNRVHSL-----DGATTLFMNDYN 336 (472)
Q Consensus 317 af~~Ar~~-----dP~a~L~~Ndy~ 336 (472)
+|+.+-+. -.+.+|-+..|+
T Consensus 283 ~y~~~~~~~~~~~~~~~~i~y~~fD 307 (319)
T PF02383_consen 283 AYEEAVKKLNQKSPNNDKIKYIWFD 307 (319)
T ss_dssp HHHHHHHHH-------TTEEEEEE-
T ss_pred HHHHHHHHHhccccCcCCCcEEEeC
Confidence 55444332 144555555444
No 109
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=34.47 E-value=36 Score=30.64 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.0
Q ss_pred cEEEEEecCCCCcccCcceeeeeec
Q 042396 155 NVRIQAVDKQGKPLQNANISIEQKQ 179 (472)
Q Consensus 155 ~~~~~v~~~~g~p~~~~~v~v~~~~ 179 (472)
.++.+|.|.+|+||++|.|.|=|..
T Consensus 17 ~l~g~V~D~~g~Pv~~A~veiWqad 41 (158)
T cd03459 17 ILEGRVLDGDGRPVPDALVEIWQAD 41 (158)
T ss_pred EEEEEEECCCCCCCCCCEEEEEccC
Confidence 4667889999999999999887654
No 110
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=33.64 E-value=4.5e+02 Score=25.45 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=15.0
Q ss_pred CCCCCcchHHHHHHHHHhCCcE
Q 042396 224 PGREDYSASDAMLQFAKNHNIA 245 (472)
Q Consensus 224 ~g~~~~~~~D~~v~~a~~~gi~ 245 (472)
.|..|++...++++++.++|+.
T Consensus 12 dg~iD~~~~~~~i~~l~~~Gv~ 33 (281)
T cd00408 12 DGEVDLDALRRLVEFLIEAGVD 33 (281)
T ss_pred CCCcCHHHHHHHHHHHHHcCCC
Confidence 4567777777777777776654
No 111
>PF07675 Cleaved_Adhesin: Cleaved Adhesin Domain; InterPro: IPR011628 This conserved region is found in a group of haemagglutinins and peptidases, e.g. IPR001769 from INTERPRO, that, in Porphyromonas gingivalis (Bacteroides gingivalis), form components of the major extracellular virulence complex RgpA-Kgp - a mixture of proteinases and adhesins []. These domains are cleaved from the original polyprotein and form part of the adhesins [].; PDB: 3KM5_B 3M1H_A.
Probab=33.62 E-value=3.5e+02 Score=24.22 Aligned_cols=76 Identities=13% Similarity=0.310 Sum_probs=35.3
Q ss_pred eeecCCEEEEEEEEEecCCC-c--cEEEEEEEC----CeEEEeeeEEEe--------------CCCeEEEEeeEeeCCC-
Q 042396 52 YLEKNKFYTLSAWIQVSEGA-A--PVTAVFKTI----TGFKHAGAAVAE--------------SKCWSMLKGGLSPDAS- 109 (472)
Q Consensus 52 ~l~~G~~Y~~SawVk~~~g~-~--~~~~~~~~~----~~~~~~~~~~v~--------------~~~W~~l~g~~t~~~~- 109 (472)
.| +|. .+++.|||....+ . ...+.+.+. +.+..+...+.+ .+.|++.+-.. |..
T Consensus 69 ~l-~g~-~~i~f~v~~~~~~~~~E~y~V~~Sttg~~~~~f~~i~e~t~~~~~~~~~~~~~~~~~~~w~~~~v~L--p~gt 144 (167)
T PF07675_consen 69 QL-SGA-QTISFWVKSQDASYGPEHYEVLYSTTGNNIADFTTILEETITANTFTNAEKIEGKTQGEWTERTVDL--PAGT 144 (167)
T ss_dssp ---TT--EEEEEEEEECTTTC---EEEEEEESS-SSGGGEEECEEEE---SS-SSSSSSSSS-----EEEEEEE---TT-
T ss_pred Cc-CCC-CEEEEEEEeccCCCCCceEEEEEecCCCChhheEEeeeeeecccccccccccccccCccEEEEEEeC--CCCC
Confidence 46 674 6999999987632 1 244444332 234444322221 36799887665 332
Q ss_pred ccEEE-EEEeCCCceeEEEccccc
Q 042396 110 GFAEL-YFESKNTSVDIWVDSISL 132 (472)
Q Consensus 110 ~~~~i-y~e~~~~~~~~yvDdv~l 132 (472)
+.+-+ .+. ....--++||||++
T Consensus 145 ~Y~afrh~~-~td~~~l~iDDV~v 167 (167)
T PF07675_consen 145 KYFAFRHYN-STDAFYLMIDDVTV 167 (167)
T ss_dssp -EEEEEEES---SS-EEEEEEEEE
T ss_pred cEEEEEecc-CCCceEEEeccEEC
Confidence 43333 222 34456789999975
No 112
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=33.08 E-value=1e+02 Score=24.58 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=10.1
Q ss_pred EEEEEecCCCccEEEEEEE
Q 042396 62 SAWIQVSEGAAPVTAVFKT 80 (472)
Q Consensus 62 SawVk~~~g~~~~~~~~~~ 80 (472)
.|+|||.+++..++..+..
T Consensus 23 gAyVRLLD~sgEFtaEvvt 41 (85)
T PF07210_consen 23 GAYVRLLDSSGEFTAEVVT 41 (85)
T ss_pred CeEEEEEcCCCCeEEEEEe
Confidence 4555555555555555544
No 113
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=32.81 E-value=4.8e+02 Score=25.54 Aligned_cols=20 Identities=10% Similarity=0.275 Sum_probs=11.9
Q ss_pred CCCCcchHHHHHHHHHhC-Cc
Q 042396 225 GREDYSASDAMLQFAKNH-NI 244 (472)
Q Consensus 225 g~~~~~~~D~~v~~a~~~-gi 244 (472)
|..|++...++++++.++ |+
T Consensus 16 g~iD~~~~~~~i~~l~~~~Gv 36 (288)
T cd00954 16 GEINEDVLRAIVDYLIEKQGV 36 (288)
T ss_pred CCCCHHHHHHHHHHHHhcCCC
Confidence 556666666666666555 44
No 114
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=30.82 E-value=6.8e+02 Score=27.00 Aligned_cols=27 Identities=11% Similarity=0.207 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeeccC
Q 042396 273 KAADKRINSVTSRYKGQVIAWDVVNEN 299 (472)
Q Consensus 273 ~~~~~~i~~v~~ry~g~i~~WDVvNE~ 299 (472)
+.++.+|+..+..--+.|+-.|-+|+.
T Consensus 97 dvv~~fv~~a~~~Gidi~RIfd~lndv 123 (499)
T PRK12330 97 EVVDRFVEKSAENGMDVFRVFDALNDP 123 (499)
T ss_pred hHHHHHHHHHHHcCCCEEEEEecCChH
Confidence 456678888777766778888888886
No 115
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=30.60 E-value=44 Score=31.14 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=21.9
Q ss_pred ccEEEEEecCCCCcccCcceeeeeecC
Q 042396 154 TNVRIQAVDKQGKPLQNANISIEQKQL 180 (472)
Q Consensus 154 ~~~~~~v~~~~g~p~~~~~v~v~~~~~ 180 (472)
--++.+|.|.+|+||++|.|+|=|...
T Consensus 40 l~l~G~V~D~~g~Pv~~A~VeiWqad~ 66 (193)
T TIGR02423 40 IRLEGRVLDGDGHPVPDALIEIWQADA 66 (193)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEccCC
Confidence 346678899999999999999976543
No 116
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=30.37 E-value=2.4e+02 Score=26.27 Aligned_cols=16 Identities=13% Similarity=0.303 Sum_probs=12.8
Q ss_pred cCCEEEEEEEEEecCC
Q 042396 55 KNKFYTLSAWIQVSEG 70 (472)
Q Consensus 55 ~G~~Y~~SawVk~~~g 70 (472)
.=..+++++|+|....
T Consensus 29 ~l~~fTvc~W~k~~~~ 44 (206)
T smart00159 29 PLQAFTVCLWFYSDLS 44 (206)
T ss_pred ChhHEEEEEEEEecCC
Confidence 5567899999999754
No 117
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=29.88 E-value=7e+02 Score=26.52 Aligned_cols=106 Identities=10% Similarity=0.055 Sum_probs=59.9
Q ss_pred CCCCcccccCCCCCCcchHHHHHHHHHhCCcEEE-EeEeecCCCCCCCcccCCCCHHHHHHHHHHHHH--------HHhh
Q 042396 214 EMKWYSTEASPGREDYSASDAMLQFAKNHNIAVR-GHNIFWDDPQYQPGWVNSLSPSDLSKAADKRIN--------SVTS 284 (472)
Q Consensus 214 ~~kW~~~ep~~g~~~~~~~D~~v~~a~~~gi~vr-GH~lvW~~~~~~P~W~~~~~~~~~~~~~~~~i~--------~v~~ 284 (472)
.+-|.+.|... + -..++++||+.-|..+- .-.| ++ ...++++. +.+|+. ++-.
T Consensus 94 dlaW~t~EtN~--~---Gt~EF~~~~e~iGaep~~avN~--Gs----------rgvd~ar~-~vEY~n~pggtywsdlR~ 155 (501)
T COG3534 94 DLAWGTTETNE--F---GTHEFMDWCELIGAEPYIAVNL--GS----------RGVDEARN-WVEYCNHPGGTYWSDLRR 155 (501)
T ss_pred ccccccccccc--c---cHHHHHHHHHHhCCceEEEEec--CC----------ccHHHHHH-HHHHccCCCCChhHHHHH
Confidence 56788666533 2 35789999999998763 2222 11 11122222 222222 1111
Q ss_pred hcC--C--ceEEEEeeccCccccccccccCchHHHHHHHHHHh---hCCCCeEEEeccCC
Q 042396 285 RYK--G--QVIAWDVVNENLHFSFFESKLGQNASGVFFNRVHS---LDGATTLFMNDYNT 337 (472)
Q Consensus 285 ry~--g--~i~~WDVvNE~~~~~~~~~~~G~~~~~~af~~Ar~---~dP~a~L~~Ndy~~ 337 (472)
.++ . .|..|=|-||....-.+....-++|...|-+.+|- .||..++++-++..
T Consensus 156 ~~G~~~P~nvK~w~lGNEm~GpWq~G~~~a~EY~~~A~e~~k~~k~~d~t~e~~v~g~a~ 215 (501)
T COG3534 156 ENGREEPWNVKYWGLGNEMDGPWQCGHKTAPEYGRLANEYRKYMKYFDPTIENVVCGSAN 215 (501)
T ss_pred hcCCCCCcccceEEeccccCCCcccccccCHHHHHHHHHHHHHHhhcCccccceEEeecC
Confidence 111 1 69999999998532222334456885555444443 59999999987753
No 118
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=29.80 E-value=2.4e+02 Score=29.21 Aligned_cols=75 Identities=16% Similarity=0.249 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcCcCCCCCcceeeeccccCC-CCHHHHHHHHHHHHhcCCCEEEeeeccCCC-chHHHHHHHHHHHHHc
Q 042396 348 PAMYLQKLRQISEFPGNQNLRIGIGLESHFST-PNIPYMRASIDTLGATGLPIWLTEVDVQSS-PNQAQYLEQILREAHA 425 (472)
Q Consensus 348 ~~~~~~~~~~l~~~~~~~G~~DgIG~Q~H~~~-p~~~~~~~~l~~~a~~g~pi~iTE~dv~~~-~~qA~~~~~~~~~~~s 425 (472)
...+...|+..++ .|+ ||..+-..... .....+..+++.-..+|..|.++ +|+... +...+.+..++.....
T Consensus 16 ~~dw~~di~~A~~----~GI-DgFaLNig~~d~~~~~~l~~a~~AA~~~gFKlf~S-fD~~~~~~~~~~~~~~~i~~y~~ 89 (386)
T PF03659_consen 16 QEDWEADIRLAQA----AGI-DGFALNIGSSDSWQPDQLADAYQAAEAVGFKLFFS-FDMNSLGPWSQDELIALIKKYAG 89 (386)
T ss_pred HHHHHHHHHHHHH----cCC-CEEEEecccCCcccHHHHHHHHHHHHhcCCEEEEE-ecccCCCCCCHHHHHHHHHHHcC
Confidence 5677777777776 666 99888554222 34567777777777889999888 888644 3344777888888888
Q ss_pred CCC
Q 042396 426 HPK 428 (472)
Q Consensus 426 ~p~ 428 (472)
||+
T Consensus 90 ~pa 92 (386)
T PF03659_consen 90 HPA 92 (386)
T ss_pred Chh
Confidence 875
No 119
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=29.47 E-value=48 Score=30.68 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=21.7
Q ss_pred ccEEEEEecCCCCcccCcceeeeeec
Q 042396 154 TNVRIQAVDKQGKPLQNANISIEQKQ 179 (472)
Q Consensus 154 ~~~~~~v~~~~g~p~~~~~v~v~~~~ 179 (472)
--++.+|.|.+|+||+||.|.|=|..
T Consensus 37 l~l~G~V~D~~g~Pi~gA~VeiWqad 62 (185)
T cd03463 37 ITLEGRVYDGDGAPVPDAMLEIWQAD 62 (185)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEcCC
Confidence 45678889999999999999987644
No 120
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=29.46 E-value=4.1e+02 Score=23.66 Aligned_cols=78 Identities=13% Similarity=0.082 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCcCCCCCcceeeeccccCC-CC--HHHHHHHHHHHHh---cCCCEEEeeeccCCCchHHHHHHHHHHH
Q 042396 349 AMYLQKLRQISEFPGNQNLRIGIGLESHFST-PN--IPYMRASIDTLGA---TGLPIWLTEVDVQSSPNQAQYLEQILRE 422 (472)
Q Consensus 349 ~~~~~~~~~l~~~~~~~G~~DgIG~Q~H~~~-p~--~~~~~~~l~~~a~---~g~pi~iTE~dv~~~~~qA~~~~~~~~~ 422 (472)
...++.++...+ .|+ |+|-+...++. ++ .+.+.+.+.+..+ .++|+.+.-.--... -.+.+..+.++
T Consensus 65 ~~~~~~a~~a~~----~Ga-d~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~--~~~~~~~~~~~ 137 (201)
T cd00945 65 EVKVAEVEEAID----LGA-DEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLK--TADEIAKAARI 137 (201)
T ss_pred HHHHHHHHHHHH----cCC-CEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCC--CHHHHHHHHHH
Confidence 445566666666 554 77777543333 44 4555555555544 488988776533321 12334444444
Q ss_pred HHcCCCeeEEEE
Q 042396 423 AHAHPKVQGIVV 434 (472)
Q Consensus 423 ~~s~p~v~gi~~ 434 (472)
+ .++++.+|-.
T Consensus 138 ~-~~~g~~~iK~ 148 (201)
T cd00945 138 A-AEAGADFIKT 148 (201)
T ss_pred H-HHhCCCEEEe
Confidence 4 3577877753
No 121
>PRK10785 maltodextrin glucosidase; Provisional
Probab=29.00 E-value=2.2e+02 Score=31.35 Aligned_cols=51 Identities=10% Similarity=0.076 Sum_probs=31.1
Q ss_pred HHhhhcCC---ceEEE--EeeccCccccccccccCchHHHHHHHHHHhhCCCCeEEEec
Q 042396 281 SVTSRYKG---QVIAW--DVVNENLHFSFFESKLGQNASGVFFNRVHSLDGATTLFMND 334 (472)
Q Consensus 281 ~v~~ry~g---~i~~W--DVvNE~~~~~~~~~~~G~~~~~~af~~Ar~~dP~a~L~~Nd 334 (472)
.++.++-. .|+.| ||+++.-..... ....++++...+.+|+..|++-+ +.+
T Consensus 317 ~v~~~Wl~~~~giDG~RlDva~~v~~~~~~--~~~~~f~~~~~~~vk~~~pd~~l-igE 372 (598)
T PRK10785 317 SIVRHWLKAPYNIDGWRLDVVHMLGEGGGA--RNNLQHVAGITQAAKEENPEAYV-LGE 372 (598)
T ss_pred HHHHHhhcCCCCCcEEEEecHhHhccccCc--cccHHHHHHHHHHHHhhCCCeEE-EEe
Confidence 35555432 36666 899886322110 11236788888889999999765 444
No 122
>PRK05406 LamB/YcsF family protein; Provisional
Probab=28.71 E-value=3.8e+02 Score=25.98 Aligned_cols=91 Identities=18% Similarity=0.218 Sum_probs=61.2
Q ss_pred chHHHHHHHHHhCCcEEEEeEeecCCCCCCCccc------CCCCHHHHHHHHHHHHHH---HhhhcCCceEEEEeeccCc
Q 042396 230 SASDAMLQFAKNHNIAVRGHNIFWDDPQYQPGWV------NSLSPSDLSKAADKRINS---VTSRYKGQVIAWDVVNENL 300 (472)
Q Consensus 230 ~~~D~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~------~~~~~~~~~~~~~~~i~~---v~~ry~g~i~~WDVvNE~~ 300 (472)
...++.+..|++||+.+=.|+- .|+-. -.++++++.+.+.--|.. ++...+.+|.+-- |
T Consensus 44 ~~M~~tv~lA~~~gV~IGAHPg-------ypD~~gFGRR~m~~s~~el~~~v~yQigAL~~~a~~~g~~l~hVK----P- 111 (246)
T PRK05406 44 AVMRRTVRLAKENGVAIGAHPG-------YPDLEGFGRRNMDLSPEELYALVLYQIGALQAIARAAGGRVSHVK----P- 111 (246)
T ss_pred HHHHHHHHHHHHcCCeEccCCC-------CCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeeEEeC----c-
Confidence 5678999999999999999963 44422 136888888877766655 4556666777543 2
Q ss_pred ccccccccc-CchHHHHHHHHHHhhCCCCeEEE
Q 042396 301 HFSFFESKL-GQNASGVFFNRVHSLDGATTLFM 332 (472)
Q Consensus 301 ~~~~~~~~~-G~~~~~~af~~Ar~~dP~a~L~~ 332 (472)
|+-.+.... .++......+++++.+|+..|+.
T Consensus 112 HGALYN~~~~d~~~a~av~~ai~~~~~~l~l~~ 144 (246)
T PRK05406 112 HGALYNMAAKDPALADAVAEAVAAVDPSLILVG 144 (246)
T ss_pred cHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEe
Confidence 322222222 23556677888999999977765
No 123
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=28.36 E-value=97 Score=31.66 Aligned_cols=70 Identities=11% Similarity=0.078 Sum_probs=44.7
Q ss_pred cccccCCCCCCcchHHHHHHHHHhCCcEEE------EeEeecCCCCCCCccc------------------CCCCHHHHHH
Q 042396 218 YSTEASPGREDYSASDAMLQFAKNHNIAVR------GHNIFWDDPQYQPGWV------------------NSLSPSDLSK 273 (472)
Q Consensus 218 ~~~ep~~g~~~~~~~D~~v~~a~~~gi~vr------GH~lvW~~~~~~P~W~------------------~~~~~~~~~~ 273 (472)
..-.+..|.|.-+....++++|+++||.|. ||+..|-. ..|.-. ...+.++..+
T Consensus 74 ~~~~~~~~~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~--~~pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~ 151 (357)
T cd06563 74 GDGTPYGGFYTQEEIREIVAYAAERGITVIPEIDMPGHALAALA--AYPELGCTGGPGSVVSVQGVVSNVLCPGKPETYT 151 (357)
T ss_pred cCCCccCceECHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHH--hCccccCCCCCCccccccCcCCCccCCCChhHHH
Confidence 334455678888889999999999999874 88764432 112110 0112345566
Q ss_pred HHHHHHHHHhhhcCCc
Q 042396 274 AADKRINSVTSRYKGQ 289 (472)
Q Consensus 274 ~~~~~i~~v~~ry~g~ 289 (472)
.+++-+++++.-|.++
T Consensus 152 f~~~ll~E~~~lF~~~ 167 (357)
T cd06563 152 FLEDVLDEVAELFPSP 167 (357)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 6777777777777654
No 124
>PF11958 DUF3472: Domain of unknown function (DUF3472); InterPro: IPR021862 This presumed domain is functionally uncharacterised. This domain is found in bacteria, eukaryotes and viruses. This domain is typically between 174 to 190 amino acids in length. This domain has a single completely conserved residue G that may be functionally important.
Probab=28.28 E-value=3.5e+02 Score=24.84 Aligned_cols=23 Identities=9% Similarity=-0.099 Sum_probs=18.2
Q ss_pred eeeEEEeeecCCEEEEEEEEEec
Q 042396 46 CISQKVYLEKNKFYTLSAWIQVS 68 (472)
Q Consensus 46 g~~~~~~l~~G~~Y~~SawVk~~ 68 (472)
.+.....-+.|++|+|.+.+.-.
T Consensus 51 ~~~~~~~W~~g~~Y~f~v~~~~~ 73 (184)
T PF11958_consen 51 SCSVPYPWKAGHTYRFLVENTPD 73 (184)
T ss_pred EEEEEeccccCCEEEEEEEEeec
Confidence 45556689999999999887763
No 125
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.23 E-value=61 Score=30.97 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.2
Q ss_pred ccEEEEEecCCCCcccCcceeeeeec
Q 042396 154 TNVRIQAVDKQGKPLQNANISIEQKQ 179 (472)
Q Consensus 154 ~~~~~~v~~~~g~p~~~~~v~v~~~~ 179 (472)
--++.+|.|.+|+||++|.|.|=|..
T Consensus 73 i~l~G~VlD~~G~Pv~~A~VEiWQAd 98 (226)
T COG3485 73 ILLEGRVLDGNGRPVPDALVEIWQAD 98 (226)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEEcC
Confidence 36788999999999999999986644
No 126
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=28.09 E-value=8.3e+02 Score=26.94 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=17.1
Q ss_pred HHHHHHHHHhhhcCCceEEEEeeccC
Q 042396 274 AADKRINSVTSRYKGQVIAWDVVNEN 299 (472)
Q Consensus 274 ~~~~~i~~v~~ry~g~i~~WDVvNE~ 299 (472)
.++.+++..+..--+.|...|-.|+.
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~ 122 (592)
T PRK09282 97 VVEKFVEKAAENGIDIFRIFDALNDV 122 (592)
T ss_pred hhHHHHHHHHHCCCCEEEEEEecChH
Confidence 34556666666655667777777775
No 127
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=27.96 E-value=91 Score=30.88 Aligned_cols=48 Identities=13% Similarity=0.183 Sum_probs=37.2
Q ss_pred HHHHHHHHccccceeeCCCCCCcccccCCCCCCcchHHHHHHHHHhCCc-EEEEe
Q 042396 196 TAYQNWFTSRFKVTAFEDEMKWYSTEASPGREDYSASDAMLQFAKNHNI-AVRGH 249 (472)
Q Consensus 196 ~~~~~~~~~~fn~vt~en~~kW~~~ep~~g~~~~~~~D~~v~~a~~~gi-~vrGH 249 (472)
++|++++.++||.|++.-.+.. |+.+.-+.+.+.++.|.++|- ++.|.
T Consensus 82 ~~y~rlL~aGiNVv~~g~~l~y------Pw~~~PelaeKpl~lAaraGn~Tl~gt 130 (350)
T COG3804 82 DEYARLLRAGINVVTPGPVLQY------PWFYPPELAEKPLELAARAGNATLHGT 130 (350)
T ss_pred HHHHHHHHcCCceeccCccccC------CCcCChHHhhchHHHHHhcCCceEEec
Confidence 4899999999999998544332 344455678889999999999 77774
No 128
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=27.87 E-value=5.8e+02 Score=24.93 Aligned_cols=20 Identities=15% Similarity=0.385 Sum_probs=11.1
Q ss_pred CCCCcchHHHHHHHHHhCCc
Q 042396 225 GREDYSASDAMLQFAKNHNI 244 (472)
Q Consensus 225 g~~~~~~~D~~v~~a~~~gi 244 (472)
|..|++...++++++.+.|+
T Consensus 17 g~iD~~~l~~~i~~l~~~Gv 36 (292)
T PRK03170 17 GSVDFAALRKLVDYLIANGT 36 (292)
T ss_pred CCcCHHHHHHHHHHHHHcCC
Confidence 45555555555555555554
No 129
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=27.76 E-value=64 Score=28.44 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=22.5
Q ss_pred ccEEEEEecCCCCcccCcceeeeeecC
Q 042396 154 TNVRIQAVDKQGKPLQNANISIEQKQL 180 (472)
Q Consensus 154 ~~~~~~v~~~~g~p~~~~~v~v~~~~~ 180 (472)
-.++.+|+|.+|.|+++|.|.+-+...
T Consensus 12 l~l~G~V~D~~g~pv~~A~VeiW~~d~ 38 (146)
T cd00421 12 LTLTGTVLDGDGCPVPDALVEIWQADA 38 (146)
T ss_pred EEEEEEEECCCCCCCCCcEEEEEecCC
Confidence 357789999999999999998876544
No 130
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=26.90 E-value=8e+02 Score=26.20 Aligned_cols=27 Identities=11% Similarity=0.131 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeeccC
Q 042396 273 KAADKRINSVTSRYKGQVIAWDVVNEN 299 (472)
Q Consensus 273 ~~~~~~i~~v~~ry~g~i~~WDVvNE~ 299 (472)
+.++.+|+..+..--+.|...|-+|+.
T Consensus 95 Dvv~~fv~~A~~~Gvd~irif~~lnd~ 121 (467)
T PRK14041 95 DVVELFVKKVAEYGLDIIRIFDALNDI 121 (467)
T ss_pred hhhHHHHHHHHHCCcCEEEEEEeCCHH
Confidence 445567777666655677778888874
No 131
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=26.84 E-value=3.8e+02 Score=27.04 Aligned_cols=87 Identities=17% Similarity=0.171 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhCCCCeEEE--ec-cC-------CcccCCCCCCCHHHHHHHHHHHhcCcCCCCCcceeeeccccCC--C
Q 042396 313 ASGVFFNRVHSLDGATTLFM--ND-YN-------TIEDSRDGKATPAMYLQKLRQISEFPGNQNLRIGIGLESHFST--P 380 (472)
Q Consensus 313 ~~~~af~~Ar~~dP~a~L~~--Nd-y~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~DgIG~Q~H~~~--p 380 (472)
-+...-+.+++..+.+++.+ |- .. .-..+......+....+.++.+.+ .+ ..-+|++.|+++ .
T Consensus 102 el~~l~~~~~~~~~~~~v~lrin~g~~~~~~~~~~~~~~srfGi~~~e~~~~~~~~~~----~~-l~l~Gl~~H~gs~~~ 176 (368)
T cd06810 102 ELERLNELAKKLGPKARILLRVNPDVSAGTHKISTGGLKSKFGLSLSEARAALERAKE----LD-LRLVGLHFHVGSQIL 176 (368)
T ss_pred HHHHHHHHHHHhCCCCeEEEEECCCCCCCcccCccCCCCCCcCCCHHHHHHHHHHHHh----CC-CcEEEEEEcCCcCCC
Confidence 44555556666667666665 31 10 000001112234556666666665 55 577889999987 3
Q ss_pred CHHHH-------HHHHHHHHhcCCCEEEeeecc
Q 042396 381 NIPYM-------RASIDTLGATGLPIWLTEVDV 406 (472)
Q Consensus 381 ~~~~~-------~~~l~~~a~~g~pi~iTE~dv 406 (472)
+.+.+ .+.++++.+.|.+ +..+|+
T Consensus 177 d~~~~~~~~~~~~~~~~~l~~~g~~--~~~id~ 207 (368)
T cd06810 177 DLETIVQALSDARELIEELVEMGFP--LEMLDL 207 (368)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCC--CCEEEe
Confidence 34333 3334444444554 444555
No 132
>PLN02417 dihydrodipicolinate synthase
Probab=25.83 E-value=6.3e+02 Score=24.65 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.1
Q ss_pred CCCCCCcchHHHHHHHHHhCCcE
Q 042396 223 SPGREDYSASDAMLQFAKNHNIA 245 (472)
Q Consensus 223 ~~g~~~~~~~D~~v~~a~~~gi~ 245 (472)
..|..|++...++++|+.++|+.
T Consensus 15 ~~g~iD~~~~~~~i~~l~~~Gv~ 37 (280)
T PLN02417 15 PDGRFDLEAYDSLVNMQIENGAE 37 (280)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCC
Confidence 46889999999999999998864
No 133
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=25.18 E-value=7.9e+02 Score=25.56 Aligned_cols=121 Identities=14% Similarity=0.264 Sum_probs=72.5
Q ss_pred HccccceeeCCCCCC-----------cccccCCCCCCcchHHHHHHHHHhCCcEEEEeEeecCCC----------CCCCc
Q 042396 203 TSRFKVTAFEDEMKW-----------YSTEASPGREDYSASDAMLQFAKNHNIAVRGHNIFWDDP----------QYQPG 261 (472)
Q Consensus 203 ~~~fn~vt~en~~kW-----------~~~ep~~g~~~~~~~D~~v~~a~~~gi~vrGH~lvW~~~----------~~~P~ 261 (472)
..+++.+++ +--| +.+++.+.+|- .-...+++.+++.||++- +|-.+ ...|+
T Consensus 69 ~~G~e~fvi--DDGW~~~r~~d~~~~GdW~~~~~kFP-~Gl~~l~~~i~~~Gmk~G----lW~ePe~v~~~S~l~~~hPd 141 (394)
T PF02065_consen 69 ELGYEYFVI--DDGWFGGRDDDNAGLGDWEPDPKKFP-NGLKPLADYIHSLGMKFG----LWFEPEMVSPDSDLYREHPD 141 (394)
T ss_dssp HHT-SEEEE---SSSBCTESTTTSTTSBECBBTTTST-THHHHHHHHHHHTT-EEE----EEEETTEEESSSCHCCSSBG
T ss_pred HhCCEEEEE--cCccccccCCCcccCCceeEChhhhC-CcHHHHHHHHHHCCCeEE----EEeccccccchhHHHHhCcc
Confidence 347888887 4444 34556555552 347889999999999974 33322 13688
Q ss_pred ccCC----------------CCHHHHHHHHHHHHHHHhhhcCCceEEEEeeccCccccccccccCc---hHH---HHHHH
Q 042396 262 WVNS----------------LSPSDLSKAADKRINSVTSRYKGQVIAWDVVNENLHFSFFESKLGQ---NAS---GVFFN 319 (472)
Q Consensus 262 W~~~----------------~~~~~~~~~~~~~i~~v~~ry~g~i~~WDVvNE~~~~~~~~~~~G~---~~~---~~af~ 319 (472)
|+.. ++.++.++.+.+-|.+++..|+=.-.-||- |..+... ....+++ .|+ -..++
T Consensus 142 w~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~-n~~~~~~-~~~~~~~~~~~~~~~~y~l~~ 219 (394)
T PF02065_consen 142 WVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDF-NRDITEA-GSPSLPEGYHRYVLGLYRLLD 219 (394)
T ss_dssp GBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE--TS-TTS--SSTTS-GHHHHHHHHHHHHHH
T ss_pred ceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEecc-ccCCCCC-CCCCchHHHHHHHHHHHHHHH
Confidence 9742 345677888888888888888645556884 5543221 1112222 232 35678
Q ss_pred HHHhhCCCCeEEE
Q 042396 320 RVHSLDGATTLFM 332 (472)
Q Consensus 320 ~Ar~~dP~a~L~~ 332 (472)
..|+..|++.+=.
T Consensus 220 ~L~~~~P~v~iE~ 232 (394)
T PF02065_consen 220 RLRARFPDVLIEN 232 (394)
T ss_dssp HHHHHTTTSEEEE
T ss_pred HHHHhCCCcEEEe
Confidence 8899999987654
No 134
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=25.02 E-value=3.7e+02 Score=22.66 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=29.4
Q ss_pred EEEEeeEeeCCCccEEEEEEeCCCceeEEEccccccc
Q 042396 98 SMLKGGLSPDASGFAELYFESKNTSVDIWVDSISLQP 134 (472)
Q Consensus 98 ~~l~g~~t~~~~~~~~iy~e~~~~~~~~yvDdv~l~~ 134 (472)
.+++|.++++.++.-.+++.+ +....++||+-.+..
T Consensus 46 ~~~~g~i~~~~~G~y~f~~~~-~~~~~l~Idg~~vid 81 (136)
T smart00758 46 VRWTGYLKPPEDGEYTFSITS-DDGARLWIDGKLVID 81 (136)
T ss_pred EEEEEEEECCCCccEEEEEEc-CCcEEEEECCcEEEc
Confidence 467899999988888888875 677899999977753
No 135
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=24.93 E-value=4.3e+02 Score=30.76 Aligned_cols=87 Identities=16% Similarity=0.215 Sum_probs=58.2
Q ss_pred HHHHHHHHHh---CCcEEEEeEeecCCCCCCCccc--CCCCHHHHHHHHHHHHHHHhhhcCC-ceEEEEeeccCcccccc
Q 042396 232 SDAMLQFAKN---HNIAVRGHNIFWDDPQYQPGWV--NSLSPSDLSKAADKRINSVTSRYKG-QVIAWDVVNENLHFSFF 305 (472)
Q Consensus 232 ~D~~v~~a~~---~gi~vrGH~lvW~~~~~~P~W~--~~~~~~~~~~~~~~~i~~v~~ry~g-~i~~WDVvNE~~~~~~~ 305 (472)
.|-+.+||.+ ...-+|--.++|+.. +---+ +..+.+-+.+.|.+|++..+.-|.| ||+ |- |..+
T Consensus 471 sdPlrnFA~qpg~s~vYLrRElI~WGDs--VKLryG~kpeDsPyLWq~M~kY~e~tAriFdG~RlD-----Nc--HsTP- 540 (1521)
T KOG3625|consen 471 SDPLRNFAEQPGNSEVYLRRELICWGDS--VKLRYGNKPEDSPYLWQHMKKYTEITARIFDGVRLD-----NC--HSTP- 540 (1521)
T ss_pred CChhhhHHhCcCccceeeeeeeeeecce--eeeccCCCcccChHHHHHHHHHHHHHHHHhcceeec-----cC--CCCc-
Confidence 6889999997 446678788899863 21111 1124467899999999999999988 553 32 2111
Q ss_pred ccccCchHHHHHHHHHHhhCCCCeEEEe
Q 042396 306 ESKLGQNASGVFFNRVHSLDGATTLFMN 333 (472)
Q Consensus 306 ~~~~G~~~~~~af~~Ar~~dP~a~L~~N 333 (472)
-...+...++||+..|+.-++.-
T Consensus 541 -----lHVaEylLd~ARk~nPnlYVvAE 563 (1521)
T KOG3625|consen 541 -----LHVAEYLLDAARKLNPNLYVVAE 563 (1521)
T ss_pred -----hhHHHHHHHHHHhcCCCeEEEee
Confidence 12345567889999999555543
No 136
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=24.61 E-value=4.1e+02 Score=22.05 Aligned_cols=17 Identities=18% Similarity=0.470 Sum_probs=13.1
Q ss_pred cCCEEEEEEEEEecCCC
Q 042396 55 KNKFYTLSAWIQVSEGA 71 (472)
Q Consensus 55 ~G~~Y~~SawVk~~~g~ 71 (472)
+...++|++|||....+
T Consensus 20 ~~~~fTi~~w~~~~~~~ 36 (157)
T PF13385_consen 20 PSGSFTISFWVKPDSPS 36 (157)
T ss_dssp GGTEEEEEEEEEESS--
T ss_pred CCCCEEEEEEEEeCCCC
Confidence 37899999999998653
No 137
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=24.03 E-value=9.9e+02 Score=26.30 Aligned_cols=27 Identities=7% Similarity=0.167 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeeccC
Q 042396 273 KAADKRINSVTSRYKGQVIAWDVVNEN 299 (472)
Q Consensus 273 ~~~~~~i~~v~~ry~g~i~~WDVvNE~ 299 (472)
+.++.+|+..+..--+.|...|-.|+.
T Consensus 91 dvv~~~v~~a~~~Gvd~irif~~lnd~ 117 (582)
T TIGR01108 91 DVVERFVKKAVENGMDVFRIFDALNDP 117 (582)
T ss_pred hhHHHHHHHHHHCCCCEEEEEEecCcH
Confidence 345566666665544567777777774
No 138
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=23.72 E-value=83 Score=31.69 Aligned_cols=65 Identities=14% Similarity=0.288 Sum_probs=41.8
Q ss_pred ccCCCCCCcchHHHHHHHHHhCCcEEE------EeEeecCCCCCCCc--------ccC----CCCHHHHHHHHHHHHHHH
Q 042396 221 EASPGREDYSASDAMLQFAKNHNIAVR------GHNIFWDDPQYQPG--------WVN----SLSPSDLSKAADKRINSV 282 (472)
Q Consensus 221 ep~~g~~~~~~~D~~v~~a~~~gi~vr------GH~lvW~~~~~~P~--------W~~----~~~~~~~~~~~~~~i~~v 282 (472)
.+..|.|.-+....++++|+++||.|. ||+..|-.. .|. |.. ..+.++..+.+++-+.++
T Consensus 73 ~~~~~~YT~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~--~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~ 150 (326)
T cd06564 73 TANDGYYTKEEFKELIAYAKDRGVNIIPEIDSPGHSLAFTKA--MPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEY 150 (326)
T ss_pred CCCCCcccHHHHHHHHHHHHHcCCeEeccCCCcHHHHHHHHh--hHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHH
Confidence 345677888889999999999999874 887655321 111 111 123355566666667777
Q ss_pred hhhcC
Q 042396 283 TSRYK 287 (472)
Q Consensus 283 ~~ry~ 287 (472)
+.-|.
T Consensus 151 ~~~f~ 155 (326)
T cd06564 151 LDGFN 155 (326)
T ss_pred HHhcC
Confidence 76666
No 139
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=23.68 E-value=52 Score=24.86 Aligned_cols=44 Identities=23% Similarity=0.386 Sum_probs=32.2
Q ss_pred EccccccccchhhhhhhhhhhhhccccccEEEEEecCCCCcccCc
Q 042396 127 VDSISLQPFTQEEWRSQQHQSIEKNHKTNVRIQAVDKQGKPLQNA 171 (472)
Q Consensus 127 vDdv~l~~~s~~~w~~~a~~~Ie~~Rk~~~~~~v~~~~g~p~~~~ 171 (472)
+|.+.|.- ....||.-...++....+++=+|+|+|.+|+.|.-.
T Consensus 18 ~~~i~l~i-~g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~ 61 (66)
T PF11141_consen 18 VARIPLPI-SGGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSL 61 (66)
T ss_pred EEEEEEec-cCCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEE
Confidence 44455432 233488888888888889999999999999887644
No 140
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=22.53 E-value=3.3e+02 Score=30.08 Aligned_cols=86 Identities=12% Similarity=0.150 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHhhCCCCeEEEeccCCccc--CCC---CCCCHHHHHHHHHHHhcCcCCCCCcceeeeccccCCCCHHHHH
Q 042396 312 NASGVFFNRVHSLDGATTLFMNDYNTIED--SRD---GKATPAMYLQKLRQISEFPGNQNLRIGIGLESHFSTPNIPYMR 386 (472)
Q Consensus 312 ~~~~~af~~Ar~~dP~a~L~~Ndy~~~~~--~~~---~~~~~~~~~~~~~~l~~~~~~~G~~DgIG~Q~H~~~p~~~~~~ 386 (472)
++...|.+.||++.-.-.++..+.+.... +.. ...-...|...++.|.+ .|+ |.|.+.. .|+..+.+
T Consensus 83 ~l~~~av~lAr~a~~~~~~VagsiGP~g~~~~~~~~~~~~~~~~~~~~~~~l~~----~gv-D~l~~ET---~~~~~Ea~ 154 (612)
T PRK08645 83 EINRAAVRLAREAAGDDVYVAGTIGPIGGRGPLGDISLEEIRREFREQIDALLE----EGV-DGLLLET---FYDLEELL 154 (612)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh----cCC-CEEEEEc---cCCHHHHH
Confidence 46788888888874221334343332211 100 00112333445555544 554 8776631 27788888
Q ss_pred HHHHHHHhcC-CCEEEeeecc
Q 042396 387 ASIDTLGATG-LPIWLTEVDV 406 (472)
Q Consensus 387 ~~l~~~a~~g-~pi~iTE~dv 406 (472)
..++.....+ +|+|++ +.+
T Consensus 155 a~~~a~~~~~~~p~~~S-f~~ 174 (612)
T PRK08645 155 LALEAAREKTDLPIIAQ-VAF 174 (612)
T ss_pred HHHHHHHHhCCCcEEEE-EEE
Confidence 8888887776 999887 344
No 141
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=22.52 E-value=9.6e+02 Score=25.62 Aligned_cols=61 Identities=15% Similarity=0.153 Sum_probs=33.8
Q ss_pred CCcchHHHHHHHHHhCCc--EEEEeEeecCCCCCCCcccCCCCHHHHHHHHHHHHHHHhhhcCCceEEEEeeccCc
Q 042396 227 EDYSASDAMLQFAKNHNI--AVRGHNIFWDDPQYQPGWVNSLSPSDLSKAADKRINSVTSRYKGQVIAWDVVNENL 300 (472)
Q Consensus 227 ~~~~~~D~~v~~a~~~gi--~vrGH~lvW~~~~~~P~W~~~~~~~~~~~~~~~~i~~v~~ry~g~i~~WDVvNE~~ 300 (472)
-.|++...+-+.+.+--+ -+||..++=.. ..| ...++.+++..+.+--+.++..|-.|+..
T Consensus 70 dpwerlr~~r~~~~nt~lqmLlRG~n~vgy~--~yp-----------ddvv~~fv~~a~~~Gidi~Rifd~lnd~~ 132 (468)
T PRK12581 70 DPWERLRTLKKGLPNTRLQMLLRGQNLLGYR--HYA-----------DDIVDKFISLSAQNGIDVFRIFDALNDPR 132 (468)
T ss_pred CHHHHHHHHHHhCCCCceeeeeccccccCcc--CCc-----------chHHHHHHHHHHHCCCCEEEEcccCCCHH
Confidence 346666666665543332 34565543111 122 13455667777777667777888888763
No 142
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=22.32 E-value=73 Score=31.59 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=22.4
Q ss_pred ccEEEEEecCCCCcccCcceeeeeecCC
Q 042396 154 TNVRIQAVDKQGKPLQNANISIEQKQLR 181 (472)
Q Consensus 154 ~~~~~~v~~~~g~p~~~~~v~v~~~~~~ 181 (472)
--++.+|.|.+|+||+||.|.|=|....
T Consensus 129 l~v~G~V~D~~G~PI~gA~VeIWqad~~ 156 (285)
T TIGR02439 129 LFLHGQVTDADGKPIAGAKVELWHANTK 156 (285)
T ss_pred EEEEEEEECCCCCCcCCcEEEEEccCCC
Confidence 3466788999999999999998765443
No 143
>PF13313 DUF4082: Domain of unknown function (DUF4082)
Probab=22.31 E-value=1.1e+02 Score=27.36 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=14.6
Q ss_pred eeeEEEeeecCCEEEEEEE
Q 042396 46 CISQKVYLEKNKFYTLSAW 64 (472)
Q Consensus 46 g~~~~~~l~~G~~Y~~Saw 64 (472)
..+.+|.|++|.+|.+|..
T Consensus 77 ~f~~PV~v~AgttYVvSY~ 95 (149)
T PF13313_consen 77 TFSTPVAVTAGTTYVVSYH 95 (149)
T ss_pred eccCCeEEcCCCeEEEEEE
Confidence 4445679999999988864
No 144
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=22.00 E-value=74 Score=31.49 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=21.5
Q ss_pred cEEEEEecCCCCcccCcceeeeeecC
Q 042396 155 NVRIQAVDKQGKPLQNANISIEQKQL 180 (472)
Q Consensus 155 ~~~~~v~~~~g~p~~~~~v~v~~~~~ 180 (472)
-+..+|.|.+|+||++|.|.|=|...
T Consensus 126 ~l~G~V~D~~G~PI~~A~VeiWqad~ 151 (282)
T cd03460 126 VMHGTVTDTDGKPVPGAKVEVWHANS 151 (282)
T ss_pred EEEEEEECCCCCCcCCcEEEEECCCC
Confidence 46678899999999999999876543
No 145
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.98 E-value=1.9e+02 Score=30.85 Aligned_cols=101 Identities=13% Similarity=0.241 Sum_probs=66.0
Q ss_pred HHHHHHHHHhCCcEE-----EEeEe-----ecCCC--CCCCcccCC---------CCH--HHHHHHHHHHHHHHhhhcCC
Q 042396 232 SDAMLQFAKNHNIAV-----RGHNI-----FWDDP--QYQPGWVNS---------LSP--SDLSKAADKRINSVTSRYKG 288 (472)
Q Consensus 232 ~D~~v~~a~~~gi~v-----rGH~l-----vW~~~--~~~P~W~~~---------~~~--~~~~~~~~~~i~~v~~ry~g 288 (472)
..++++...+-||++ -||+. +.+.. ..+|.|-.- ++| +-..+.=..+++...+.|+|
T Consensus 156 qkrIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~ 235 (666)
T KOG2233|consen 156 QKRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGG 235 (666)
T ss_pred HHHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCC
Confidence 467889999999985 46642 12111 124555321 122 33455556788888889996
Q ss_pred --ceEEEEeeccCccccccccccCchHHH----HHHHHHHhhCCCCeEEEeccCC
Q 042396 289 --QVIAWDVVNENLHFSFFESKLGQNASG----VFFNRVHSLDGATTLFMNDYNT 337 (472)
Q Consensus 289 --~i~~WDVvNE~~~~~~~~~~~G~~~~~----~af~~Ar~~dP~a~L~~Ndy~~ 337 (472)
.|+.-|-.||..-.. .-++|++ ..++..++.||+|.-++-+...
T Consensus 236 ~tniy~~DpFNE~~Pp~-----sepey~~staaAiyesm~kvdknaVWllQgWlF 285 (666)
T KOG2233|consen 236 VTNIYSADPFNEILPPE-----SEPEYVKSTAAAIYESMKKVDKNAVWLLQGWLF 285 (666)
T ss_pred cccccccCcccccCCCC-----CChHHHHHHHHHHHHHHhccCcceEEeeeccee
Confidence 677789999975321 2457864 5678889999999988877654
No 146
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=21.95 E-value=2e+02 Score=29.48 Aligned_cols=55 Identities=13% Similarity=0.254 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCcEEEEeEeecCCCCCCCcccCC-----CCHHHHHHHHHHHHHHHhhhcCCceEEEE
Q 042396 233 DAMLQFAKNHNIAVRGHNIFWDDPQYQPGWVNS-----LSPSDLSKAADKRINSVTSRYKGQVIAWD 294 (472)
Q Consensus 233 D~~v~~a~~~gi~vrGH~lvW~~~~~~P~W~~~-----~~~~~~~~~~~~~i~~v~~ry~g~i~~WD 294 (472)
-..|.+.++||+.+..-.+ - .-|+|... +++++...-|.+|...+.. .-||..||
T Consensus 156 ~~fv~~m~~nGvnlyalSV-Q----NEPd~~p~~d~~~wtpQe~~rF~~qyl~si~~--~~rV~~pe 215 (433)
T COG5520 156 NDFVLEMKNNGVNLYALSV-Q----NEPDYAPTYDWCWWTPQEELRFMRQYLASINA--EMRVIIPE 215 (433)
T ss_pred HHHHHHHHhCCCceeEEee-c----cCCcccCCCCcccccHHHHHHHHHHhhhhhcc--ccEEecch
Confidence 3466778899999987544 2 35777643 4788888888888887776 33777776
No 147
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=21.89 E-value=94 Score=29.60 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=21.6
Q ss_pred cEEEEEecCCCCcccCcceeeeeecCC
Q 042396 155 NVRIQAVDKQGKPLQNANISIEQKQLR 181 (472)
Q Consensus 155 ~~~~~v~~~~g~p~~~~~v~v~~~~~~ 181 (472)
-++-+|.|.+|+||++|.|+|=|....
T Consensus 67 ~l~G~V~D~~G~PV~~A~VEIWQad~~ 93 (220)
T cd03464 67 IVHGRVLDEDGRPVPNTLVEIWQANAA 93 (220)
T ss_pred EEEEEEECCCCCCCCCCEEEEEecCCC
Confidence 355678999999999999999776443
No 148
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=21.38 E-value=3.7e+02 Score=25.21 Aligned_cols=109 Identities=18% Similarity=0.176 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhhhcCC-ceEEEEeeccCccccccccccCchHHHHHHHHHHhhCCCCeEEEeccCCcccCCCCCCCHHH
Q 042396 272 SKAADKRINSVTSRYKG-QVIAWDVVNENLHFSFFESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAM 350 (472)
Q Consensus 272 ~~~~~~~i~~v~~ry~g-~i~~WDVvNE~~~~~~~~~~~G~~~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~ 350 (472)
+...+.+|.+.-....+ .|.+||+.+|++- .+..+.+..+|+..-... ...+. .....
T Consensus 19 ~~l~~~Fi~~yk~~~P~dev~~~DL~~e~iP------~ld~~~~~a~~~~~~~~~----------t~~~~-----~~~~~ 77 (202)
T COG1182 19 RKLADEFIETYKEKHPNDEVIERDLAAEPIP------HLDEELLAAWFKPQAGEG----------TAEEK-----EALAR 77 (202)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEeecccCCCc------ccCHHHHhcccCCccCCC----------CHHHH-----HHHHH
Confidence 45567777777766654 8999999999973 222333333322211110 00000 00111
Q ss_pred HHHHHHHHhcCcCCCCCcceeeeccccCCCC-HHHHHHHHHHHHhcCCCEEEeeeccCC
Q 042396 351 YLQKLRQISEFPGNQNLRIGIGLESHFSTPN-IPYMRASIDTLGATGLPIWLTEVDVQS 408 (472)
Q Consensus 351 ~~~~~~~l~~~~~~~G~~DgIG~Q~H~~~p~-~~~~~~~l~~~a~~g~pi~iTE~dv~~ 408 (472)
.-+++++|++ + |.|=+-.-+..-+ ++++++-||.++..|+-...||=+...
T Consensus 78 sd~l~~ef~a----A---D~vVi~~PM~Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~G 129 (202)
T COG1182 78 SDKLLEEFLA----A---DKVVIAAPMYNFNIPAQLKAYIDHIAVAGKTFKYTENGPVG 129 (202)
T ss_pred HHHHHHHHHh----c---CeEEEEecccccCCCHHHHHHHHHHhcCCceEEeccCCccc
Confidence 2234566665 3 4443322333322 357999999999999999999976554
No 149
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=21.30 E-value=78 Score=31.30 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=21.3
Q ss_pred ccEEEEEecCCCCcccCcceeeeeec
Q 042396 154 TNVRIQAVDKQGKPLQNANISIEQKQ 179 (472)
Q Consensus 154 ~~~~~~v~~~~g~p~~~~~v~v~~~~ 179 (472)
--++.+|.|.+|+||+||.|.|=+..
T Consensus 133 l~v~G~V~D~~G~Pv~gA~VdiWqad 158 (281)
T TIGR02438 133 LVFSGQVTDLDGNGLAGAKVELWHAD 158 (281)
T ss_pred EEEEEEEEcCCCCCcCCCEEEEEecC
Confidence 34667889999999999999986544
No 150
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=21.10 E-value=1.9e+02 Score=29.34 Aligned_cols=97 Identities=15% Similarity=0.180 Sum_probs=49.6
Q ss_pred hHHHHHHHHHhCCcEE-----EEeEee----------------cCCCCCCCcccCCCCHHHHHHHHHHHHHHHhhhcCC-
Q 042396 231 ASDAMLQFAKNHNIAV-----RGHNIF----------------WDDPQYQPGWVNSLSPSDLSKAADKRINSVTSRYKG- 288 (472)
Q Consensus 231 ~~D~~v~~a~~~gi~v-----rGH~lv----------------W~~~~~~P~W~~~~~~~~~~~~~~~~i~~v~~ry~g- 288 (472)
-..+|++.-++-||.. -||+.- |.. -..|.|+...+ +...+.-+.+++...+.|+.
T Consensus 96 Lq~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~-f~~~~~L~P~d-plF~~i~~~F~~~q~~~yG~~ 173 (333)
T PF05089_consen 96 LQKKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNG-FCRPYFLDPTD-PLFAEIAKLFYEEQIKLYGTD 173 (333)
T ss_dssp HHHHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETT-EE--EEE-SS---HHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCC-CCCCceeCCCC-chHHHHHHHHHHHHHHhcCCC
Confidence 3567899999999974 366431 111 01233333322 33444456677777777763
Q ss_pred ceEEEEeeccCccccccccccCchH----HHHHHHHHHhhCCCCeEEEec
Q 042396 289 QVIAWDVVNENLHFSFFESKLGQNA----SGVFFNRVHSLDGATTLFMND 334 (472)
Q Consensus 289 ~i~~WDVvNE~~~~~~~~~~~G~~~----~~~af~~Ar~~dP~a~L~~Nd 334 (472)
.++.-|-.||....+. -++| .+..++..+++||+|.-++=.
T Consensus 174 ~~Y~~D~FnE~~p~~~-----~~~~l~~~s~~v~~am~~~dp~AvWvmQg 218 (333)
T PF05089_consen 174 HIYAADPFNEGGPPSG-----DPEYLANVSKAVYKAMQAADPDAVWVMQG 218 (333)
T ss_dssp SEEE--TTTTS---TT-----S---HHHHHHHHHHHHHHH-TT-EEEEEE
T ss_pred ceeCCCccCCCCCCCC-----chHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 6888899999753221 1234 456778888899999887755
No 151
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=20.98 E-value=1e+02 Score=29.37 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=21.1
Q ss_pred cEEEEEecCCCCcccCcceeeeeecC
Q 042396 155 NVRIQAVDKQGKPLQNANISIEQKQL 180 (472)
Q Consensus 155 ~~~~~v~~~~g~p~~~~~v~v~~~~~ 180 (472)
.++-+|+|.+|+||++|.|+|=|...
T Consensus 62 ~l~G~V~D~~g~PV~~A~VEIWQada 87 (220)
T TIGR02422 62 IVHGRVLDEDGRPVPNTLVEVWQANA 87 (220)
T ss_pred EEEEEEECCCCCCCCCCEEEEEecCC
Confidence 35567899999999999999977543
No 152
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=20.82 E-value=95 Score=30.12 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=21.6
Q ss_pred cEEEEEecCCCCcccCcceeeeeecC
Q 042396 155 NVRIQAVDKQGKPLQNANISIEQKQL 180 (472)
Q Consensus 155 ~~~~~v~~~~g~p~~~~~v~v~~~~~ 180 (472)
-++.+|.|.+|+||++|.|.|=|...
T Consensus 101 ~l~G~V~D~~G~Pv~~A~VeiWqad~ 126 (247)
T cd03462 101 LFRGTVKDLAGAPVAGAVIDVWHSTP 126 (247)
T ss_pred EEEEEEEcCCCCCcCCcEEEEECCCC
Confidence 46678899999999999999976543
No 153
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=20.53 E-value=2.8e+02 Score=26.75 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEeeeccCCC------chHHHHHHHHHHHHHcCCCeeEEE
Q 042396 382 IPYMRASIDTLGATGLPIWLTEVDVQSS------PNQAQYLEQILREAHAHPKVQGIV 433 (472)
Q Consensus 382 ~~~~~~~l~~~a~~g~pi~iTE~dv~~~------~~qA~~~~~~~~~~~s~p~v~gi~ 433 (472)
+..+.+.-+.|...|++|.-+|+.+... +.|++.+.+++..+-+++.|..|.
T Consensus 177 ~~~~~~v~~~L~~~g~~i~~sei~~~P~~~v~l~~e~~~~~~~li~~Lee~dDVq~Vy 234 (238)
T TIGR01033 177 PEELEKVKEALEAKGFPIESAEITMIPLTTVDLDDEQAEKLLKLIDALEDDDDVQEVY 234 (238)
T ss_pred HHHHHHHHHHHHHcCCCceeeEEEEecCCCcccCHHHHHHHHHHHHHHhcCCCcceee
Confidence 3455555556667899988888776432 478889999999999999998873
No 154
>TIGR01114 mtrH N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit H. coenzyme M methyltransferase subunit H in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=20.50 E-value=7.4e+02 Score=24.86 Aligned_cols=166 Identities=13% Similarity=0.119 Sum_probs=83.4
Q ss_pred CCCCCCcchHHHHHHHHH----hCCcEEEEeEeecCCCCCCCcccCCCCHHHHHHHHHHHHHHHhhhcCCce--EEEE--
Q 042396 223 SPGREDYSASDAMLQFAK----NHNIAVRGHNIFWDDPQYQPGWVNSLSPSDLSKAADKRINSVTSRYKGQV--IAWD-- 294 (472)
Q Consensus 223 ~~g~~~~~~~D~~v~~a~----~~gi~vrGH~lvW~~~~~~P~W~~~~~~~~~~~~~~~~i~~v~~ry~g~i--~~WD-- 294 (472)
..|.||=+.+.++++-+. .-|.+..-|.+ ..+ .++|.+||.-+++++...+ +++.
T Consensus 45 ~~GiFDk~~Ae~Lin~q~elsd~tGnp~~~qI~-------------~~t----~EA~~kYidfv~~i~d~PfliDS~~~~ 107 (314)
T TIGR01114 45 DKGIFDKAAAETLIKTQEELSDATGNPYVVQIF-------------GET----PEAIVRYIDWVADITDAPFLIDSTSGE 107 (314)
T ss_pred ccCccCHHHHHHHHHHHHHHHHHhCCCeEEEEe-------------cCC----HHHHHHHHHHHhcccCCCeEecCCcHH
Confidence 468888888887776554 45555544443 112 3667888888888776532 1111
Q ss_pred -------eeccC-ccccccccccCchHHHHHHHHHHhhCCCCeEEEeccCCcccCCCCCCCHHHHHHHHHH---HhcCcC
Q 042396 295 -------VVNEN-LHFSFFESKLGQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLRQ---ISEFPG 363 (472)
Q Consensus 295 -------VvNE~-~~~~~~~~~~G~~~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~~~~---l~~~~~ 363 (472)
-+-|. +.+..-++-+..+.-..=+++.|+.++++-+++. ||. .++. +..-+++++. .++
T Consensus 108 ~r~aa~ky~~E~GladR~IYNSIn~s~~~eEieaL~esdi~aaIiLa-Fnp-~dps-----v~gr~~~l~~gg~~~~--- 177 (314)
T TIGR01114 108 ARAAAAKYATEVGLADRAIYNSINASIEEEEIQVLKESDLSAAIVLA-FNP-MDPT-----VEGKIDILEVGGGTSD--- 177 (314)
T ss_pred HHHHHhhhhhhhchHHHHHHhhcCccCCHHHHHHHHhcCCCeEEEEe-cCC-CCCC-----HHHHHHHHHhcCcccc---
Confidence 11111 0011122223334445668889999998777764 554 2222 2222232211 000
Q ss_pred CCCCc---ceeeeccccC--------CCCHHHHHHHHHHHHhcCCCEEEeeeccCCCchHHHHHHHH
Q 042396 364 NQNLR---IGIGLESHFS--------TPNIPYMRASIDTLGATGLPIWLTEVDVQSSPNQAQYLEQI 419 (472)
Q Consensus 364 ~~G~~---DgIG~Q~H~~--------~p~~~~~~~~l~~~a~~g~pi~iTE~dv~~~~~qA~~~~~~ 419 (472)
+|.. +-.|+---+- ...-..++..+.--+.+|+|+=- .+.+.+.+=++++++
T Consensus 178 -~gll~~ae~~GI~~pliD~avtplg~g~g~a~r~~~a~K~k~G~PvG~---g~hN~~saW~wlk~~ 240 (314)
T TIGR01114 178 -KGMLEIAEECGIKYPLIDVAVTPLGAGAGAAVRSSFAVKAKFGLPVGG---GIHNVPSAWDWLREF 240 (314)
T ss_pred -ccHHHHHHHcCCCceeecccccCCCCCccHHHHHHHHHHHHhCCCcCc---ccccCchHHHHHHHh
Confidence 1221 2233321111 11234577778778889998621 222224566677763
No 155
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=20.37 E-value=1.4e+02 Score=30.23 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=13.7
Q ss_pred CCcchHHHHHHHHHhCCcEEEE
Q 042396 227 EDYSASDAMLQFAKNHNIAVRG 248 (472)
Q Consensus 227 ~~~~~~D~~v~~a~~~gi~vrG 248 (472)
..-++.|++.+||++.|+++..
T Consensus 106 lt~~rwd~l~~F~~~tG~~liF 127 (319)
T PF03662_consen 106 LTMSRWDELNNFAQKTGLKLIF 127 (319)
T ss_dssp ------HHHHHHHHHHT-EEEE
T ss_pred cchhHHHHHHHHHHHhCCEEEE
Confidence 3445679999999999998864
No 156
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=20.35 E-value=98 Score=30.19 Aligned_cols=26 Identities=27% Similarity=0.380 Sum_probs=21.5
Q ss_pred ccEEEEEecCCCCcccCcceeeeeec
Q 042396 154 TNVRIQAVDKQGKPLQNANISIEQKQ 179 (472)
Q Consensus 154 ~~~~~~v~~~~g~p~~~~~v~v~~~~ 179 (472)
--++.+|.|.+|+||++|.|.|=|..
T Consensus 105 l~l~G~V~D~~G~Pv~~A~VeiWqad 130 (256)
T cd03458 105 LFVHGTVTDTDGKPLAGATVDVWHAD 130 (256)
T ss_pred EEEEEEEEcCCCCCCCCcEEEEEccC
Confidence 34677899999999999999886644
No 157
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=20.30 E-value=97 Score=30.03 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=22.2
Q ss_pred ccEEEEEecCCCCcccCcceeeeeecC
Q 042396 154 TNVRIQAVDKQGKPLQNANISIEQKQL 180 (472)
Q Consensus 154 ~~~~~~v~~~~g~p~~~~~v~v~~~~~ 180 (472)
--++-+|.|.+|+||++|.|.|=|...
T Consensus 99 l~v~G~V~D~~G~Pv~~A~VeiWqad~ 125 (246)
T TIGR02465 99 LLIRGTVRDLSGTPVAGAVIDVWHSTP 125 (246)
T ss_pred EEEEEEEEcCCCCCcCCcEEEEECCCC
Confidence 456678899999999999999976554
No 158
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=20.28 E-value=2.4e+02 Score=34.29 Aligned_cols=87 Identities=14% Similarity=0.220 Sum_probs=58.0
Q ss_pred HHHHHHHHHh-CCcEEEEeEeecCCCCCCC-ccc-CCCCHHHHHHHHHHHHHHHhhhcCC-ceEEEEeeccCcccccccc
Q 042396 232 SDAMLQFAKN-HNIAVRGHNIFWDDPQYQP-GWV-NSLSPSDLSKAADKRINSVTSRYKG-QVIAWDVVNENLHFSFFES 307 (472)
Q Consensus 232 ~D~~v~~a~~-~gi~vrGH~lvW~~~~~~P-~W~-~~~~~~~~~~~~~~~i~~v~~ry~g-~i~~WDVvNE~~~~~~~~~ 307 (472)
.|.+.|||.. ...-+|=-++||+.- +- .+= ..-+.+-|.+.|.+|++.+++-|.| ||+ |- |..
T Consensus 451 ~dpl~DfA~~~S~aYLRREvIvWGDc--VKLRYG~~peDsP~LW~~M~~Y~~~~AkiF~G~RiD-----NC--HST---- 517 (1464)
T TIGR01531 451 SDPLRDFASPGSRVYLRRELICWGDS--VKLRYGNKPEDSPYLWQHMKEYTEMTARIFDGVRID-----NC--HST---- 517 (1464)
T ss_pred CchhhhhcCCCCceeEEEEEeeccce--eeeccCCCCcCCHHHHHHHHHHHHHHHHhhcceeee-----cc--cCC----
Confidence 6888888853 334566677888852 11 000 0123467899999999999999998 664 43 211
Q ss_pred ccCchHHHHHHHHHHhhCCCCeEEEe
Q 042396 308 KLGQNASGVFFNRVHSLDGATTLFMN 333 (472)
Q Consensus 308 ~~G~~~~~~af~~Ar~~dP~a~L~~N 333 (472)
.-...+...+.||++.|+.-++.-
T Consensus 518 --PlhVaeylLd~AR~vnPnLyV~AE 541 (1464)
T TIGR01531 518 --PIHVAEYLLDAARKYNPNLYVVAE 541 (1464)
T ss_pred --cHHHHHHHHHHHhhcCCCeEEEee
Confidence 224567778999999999666543
No 159
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=20.27 E-value=8.8e+02 Score=24.31 Aligned_cols=104 Identities=15% Similarity=0.117 Sum_probs=59.6
Q ss_pred CchHHHHHHHHHHhhCCCCeEEEeccCCcccCCCCCCCHHHHHHHHHHHhcCcCCCCCcceeeeccccCC------C---
Q 042396 310 GQNASGVFFNRVHSLDGATTLFMNDYNTIEDSRDGKATPAMYLQKLRQISEFPGNQNLRIGIGLESHFST------P--- 380 (472)
Q Consensus 310 G~~~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~DgIG~Q~H~~~------p--- 380 (472)
.+++. ..|+..|+..|+..++.|-.-. ...+ .....+.+.++.+.+ |++ +.|+.. |
T Consensus 96 ~~e~~-~~~~~vr~~~~~~p~~~Nl~~~-~~~~---~~~~~~~~~i~~~~a--------dal--el~l~~~q~~~~~~~~ 160 (326)
T cd02811 96 DPELA-ESFTVVREAPPNGPLIANLGAV-QLNG---YGVEEARRAVEMIEA--------DAL--AIHLNPLQEAVQPEGD 160 (326)
T ss_pred Chhhh-hHHHHHHHhCCCceEEeecCcc-ccCC---CCHHHHHHHHHhcCC--------CcE--EEeCcchHhhcCCCCC
Confidence 35555 8999999999999999985532 1111 124455554444322 443 335532 1
Q ss_pred -CHHHHHHHHHHHHh-cCCCEEEeeeccCCCchHHHHHHHHHHHHHcCCCeeEEEEEc
Q 042396 381 -NIPYMRASIDTLGA-TGLPIWLTEVDVQSSPNQAQYLEQILREAHAHPKVQGIVVWA 436 (472)
Q Consensus 381 -~~~~~~~~l~~~a~-~g~pi~iTE~dv~~~~~qA~~~~~~~~~~~s~p~v~gi~~Wg 436 (472)
+...+.+.|+.+.+ ..+||.+-|.+..... +..+.+ .+ -+|++|.+=|
T Consensus 161 ~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~---~~a~~l----~~-~Gvd~I~vsG 210 (326)
T cd02811 161 RDFRGWLERIEELVKALSVPVIVKEVGFGISR---ETAKRL----AD-AGVKAIDVAG 210 (326)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEecCCCCCH---HHHHHH----HH-cCCCEEEECC
Confidence 23334466777654 4899999997753321 122222 22 3788888755
Done!