Query 042398
Match_columns 422
No_of_seqs 426 out of 2028
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 05:51:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042398.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042398hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1327 Copine [Signal transdu 100.0 2.2E-84 4.7E-89 672.2 24.2 280 41-336 221-523 (529)
2 cd01459 vWA_copine_like VWA Co 100.0 1.1E-74 2.5E-79 561.6 20.5 223 80-327 19-254 (254)
3 PF07002 Copine: Copine; Inte 100.0 5.1E-51 1.1E-55 366.5 14.5 137 123-271 1-146 (146)
4 PF10138 vWA-TerF-like: vWA fo 100.0 8.6E-29 1.9E-33 231.9 16.4 197 99-336 2-200 (200)
5 cd01457 vWA_ORF176_type VWA OR 99.8 1E-19 2.2E-24 170.1 12.2 169 100-304 4-187 (199)
6 smart00327 VWA von Willebrand 98.7 8.9E-08 1.9E-12 85.0 10.3 149 99-286 2-159 (177)
7 PF13920 zf-C3HC4_3: Zinc fing 98.6 1.1E-08 2.3E-13 75.7 0.4 43 374-416 1-49 (50)
8 cd01461 vWA_interalpha_trypsin 98.6 6.2E-07 1.3E-11 80.2 11.6 147 99-283 3-150 (171)
9 KOG0320 Predicted E3 ubiquitin 98.5 4E-08 8.7E-13 90.5 2.7 49 373-421 129-186 (187)
10 KOG4172 Predicted E3 ubiquitin 98.5 1.1E-08 2.3E-13 76.9 -1.5 47 376-422 8-61 (62)
11 KOG0823 Predicted E3 ubiquitin 98.5 4.5E-08 9.7E-13 93.5 1.2 49 373-421 45-103 (230)
12 cd01463 vWA_VGCC_like VWA Volt 98.4 1.9E-06 4E-11 79.9 10.8 148 98-282 13-176 (190)
13 cd01471 vWA_micronemal_protein 98.4 2.5E-06 5.3E-11 78.4 11.5 170 99-302 1-179 (186)
14 PLN03208 E3 ubiquitin-protein 98.4 9.6E-08 2.1E-12 89.6 2.1 45 372-416 15-80 (193)
15 cd00198 vWFA Von Willebrand fa 98.4 4.1E-06 8.9E-11 72.0 11.8 147 100-284 2-154 (161)
16 PF15227 zf-C3HC4_4: zinc fing 98.4 9.5E-08 2.1E-12 68.6 0.9 33 378-410 1-42 (42)
17 KOG0317 Predicted E3 ubiquitin 98.4 1.2E-07 2.7E-12 93.0 1.7 44 373-416 237-285 (293)
18 KOG4275 Predicted E3 ubiquitin 98.3 6.1E-08 1.3E-12 95.1 -1.3 49 374-422 299-349 (350)
19 cd01464 vWA_subfamily VWA subf 98.3 2.8E-06 6.2E-11 77.6 8.8 145 98-284 3-160 (176)
20 cd01450 vWFA_subfamily_ECM Von 98.3 4.7E-06 1E-10 73.1 9.1 145 100-283 2-153 (161)
21 PHA02929 N1R/p28-like protein; 98.3 4.1E-07 8.8E-12 88.3 2.3 45 374-418 173-230 (238)
22 cd01465 vWA_subgroup VWA subgr 98.2 2E-05 4.4E-10 70.5 12.2 147 99-282 1-150 (170)
23 cd01466 vWA_C3HC4_type VWA C3H 98.2 1.1E-05 2.5E-10 72.4 9.7 141 100-283 2-145 (155)
24 PF13519 VWA_2: von Willebrand 98.2 1.7E-05 3.8E-10 69.9 10.6 146 100-282 1-148 (172)
25 PF13639 zf-RING_2: Ring finge 98.2 3.8E-07 8.3E-12 65.5 -0.2 35 377-411 2-44 (44)
26 cd01454 vWA_norD_type norD typ 98.1 3.6E-05 7.8E-10 70.1 12.7 151 100-275 2-155 (174)
27 TIGR00599 rad18 DNA repair pro 98.1 1.1E-06 2.5E-11 90.9 2.7 49 368-416 19-72 (397)
28 KOG4265 Predicted E3 ubiquitin 98.1 7.6E-07 1.6E-11 89.9 0.9 49 373-421 288-342 (349)
29 cd01456 vWA_ywmD_type VWA ywmD 98.1 1.9E-05 4E-10 74.1 9.7 160 99-281 21-188 (206)
30 PF13923 zf-C3HC4_2: Zinc fing 98.1 9.7E-07 2.1E-11 62.0 0.4 33 378-410 1-39 (39)
31 PHA02926 zinc finger-like prot 98.0 1.7E-06 3.6E-11 82.6 1.2 45 373-417 168-232 (242)
32 smart00504 Ubox Modified RING 98.0 3.6E-06 7.7E-11 64.3 2.2 41 376-416 2-47 (63)
33 cd01482 vWA_collagen_alphaI-XI 97.9 7.1E-05 1.5E-09 67.6 10.4 143 100-284 2-152 (164)
34 KOG2164 Predicted E3 ubiquitin 97.9 3.3E-06 7.2E-11 88.6 1.4 42 375-416 186-237 (513)
35 PF14634 zf-RING_5: zinc-RING 97.9 4.6E-06 9.9E-11 60.2 1.7 36 377-412 1-44 (44)
36 TIGR03788 marine_srt_targ mari 97.9 9.3E-05 2E-09 80.6 11.8 146 99-283 272-419 (596)
37 cd01472 vWA_collagen von Wille 97.9 0.00013 2.7E-09 65.7 10.3 141 100-283 2-151 (164)
38 cd01467 vWA_BatA_type VWA BatA 97.8 0.00018 3.8E-09 65.3 11.1 140 99-272 3-142 (180)
39 KOG1571 Predicted E3 ubiquitin 97.8 4.9E-06 1.1E-10 84.2 0.8 48 375-422 305-354 (355)
40 KOG0978 E3 ubiquitin ligase in 97.8 5.8E-06 1.3E-10 90.3 0.9 50 372-421 640-697 (698)
41 cd01470 vWA_complement_factors 97.8 0.00021 4.6E-09 66.4 10.7 156 99-283 1-176 (198)
42 PF00097 zf-C3HC4: Zinc finger 97.8 7.6E-06 1.7E-10 57.6 0.6 33 378-410 1-41 (41)
43 cd00162 RING RING-finger (Real 97.8 1.2E-05 2.7E-10 55.9 1.6 38 377-414 1-45 (45)
44 cd01476 VWA_integrin_invertebr 97.7 0.00043 9.2E-09 61.9 11.9 142 99-281 1-153 (163)
45 cd01473 vWA_CTRP CTRP for CS 97.7 0.00077 1.7E-08 63.2 13.9 170 100-302 2-180 (192)
46 KOG0287 Postreplication repair 97.7 5.6E-06 1.2E-10 83.0 -0.8 45 372-416 20-69 (442)
47 KOG2177 Predicted E3 ubiquitin 97.7 1.3E-05 2.7E-10 76.0 1.0 42 371-412 9-55 (386)
48 COG5574 PEX10 RING-finger-cont 97.7 1.6E-05 3.5E-10 77.6 1.3 43 373-415 213-262 (271)
49 PF14835 zf-RING_6: zf-RING of 97.6 1.7E-05 3.7E-10 61.9 0.8 44 372-415 4-51 (65)
50 cd01480 vWA_collagen_alpha_1-V 97.6 0.00044 9.5E-09 64.0 10.3 148 98-283 2-161 (186)
51 cd01474 vWA_ATR ATR (Anthrax T 97.6 0.00038 8.3E-09 64.2 9.2 146 99-283 5-155 (185)
52 COG5432 RAD18 RING-finger-cont 97.6 2.1E-05 4.5E-10 77.6 0.6 45 372-416 22-71 (391)
53 cd01462 VWA_YIEM_type VWA YIEM 97.6 0.0016 3.4E-08 57.7 12.6 133 100-273 2-135 (152)
54 PF13445 zf-RING_UBOX: RING-ty 97.5 1.9E-05 4.2E-10 57.1 0.1 26 378-404 1-31 (43)
55 PF13768 VWA_3: von Willebrand 97.5 0.00039 8.5E-09 61.8 8.6 143 100-282 2-146 (155)
56 PTZ00441 sporozoite surface pr 97.5 0.00092 2E-08 72.2 12.8 142 98-273 42-189 (576)
57 PF00092 VWA: von Willebrand f 97.5 0.00042 9.2E-09 61.8 8.3 148 100-282 1-153 (178)
58 smart00184 RING Ring finger. E 97.5 6.9E-05 1.5E-09 50.3 1.9 33 378-410 1-39 (39)
59 KOG0311 Predicted E3 ubiquitin 97.4 1.2E-05 2.7E-10 81.1 -2.8 47 372-418 40-93 (381)
60 cd01475 vWA_Matrilin VWA_Matri 97.4 0.001 2.3E-08 63.3 10.1 142 99-282 3-155 (224)
61 COG5540 RING-finger-containing 97.4 6.3E-05 1.4E-09 74.7 1.2 40 376-415 324-372 (374)
62 cd01453 vWA_transcription_fact 97.3 0.0019 4.2E-08 60.0 10.7 139 99-273 4-147 (183)
63 cd01451 vWA_Magnesium_chelatas 97.3 0.0041 8.8E-08 57.0 12.2 146 101-282 3-154 (178)
64 KOG4628 Predicted E3 ubiquitin 97.3 9.1E-05 2E-09 75.5 1.3 41 376-416 230-279 (348)
65 PRK13685 hypothetical protein; 97.3 0.0021 4.6E-08 65.0 10.9 143 99-273 89-239 (326)
66 cd01460 vWA_midasin VWA_Midasi 97.2 0.0043 9.2E-08 61.5 12.6 139 98-273 60-205 (266)
67 KOG1785 Tyrosine kinase negati 97.2 8.4E-05 1.8E-09 76.1 0.5 42 376-417 370-418 (563)
68 PF04564 U-box: U-box domain; 97.2 0.00012 2.6E-09 58.4 0.8 44 374-417 3-52 (73)
69 PF09967 DUF2201: VWA-like dom 97.1 0.0016 3.5E-08 57.3 7.3 121 101-281 1-125 (126)
70 cd01477 vWA_F09G8-8_type VWA F 97.1 0.0057 1.2E-07 57.6 11.1 139 99-273 20-172 (193)
71 cd01469 vWA_integrins_alpha_su 97.0 0.0049 1.1E-07 56.6 10.1 135 99-273 1-143 (177)
72 PF12678 zf-rbx1: RING-H2 zinc 97.0 0.00021 4.6E-09 57.2 0.8 36 376-411 20-73 (73)
73 cd01455 vWA_F11C1-5a_type Von 96.9 0.0083 1.8E-07 56.8 10.5 156 100-281 2-161 (191)
74 COG5243 HRD1 HRD ubiquitin lig 96.9 0.00039 8.4E-09 70.9 1.6 42 373-414 285-344 (491)
75 KOG0804 Cytoplasmic Zn-finger 96.9 0.00054 1.2E-08 71.3 2.5 44 372-415 172-222 (493)
76 cd01481 vWA_collagen_alpha3-VI 96.9 0.012 2.5E-07 53.9 10.9 141 100-283 2-154 (165)
77 KOG2879 Predicted E3 ubiquitin 96.7 0.0011 2.5E-08 65.1 3.2 44 372-415 236-287 (298)
78 cd01458 vWA_ku Ku70/Ku80 N-ter 96.7 0.045 9.7E-07 51.9 14.0 155 100-274 3-174 (218)
79 KOG1100 Predicted E3 ubiquitin 96.7 0.00068 1.5E-08 64.8 1.4 45 377-421 160-206 (207)
80 cd01452 VWA_26S_proteasome_sub 96.5 0.022 4.9E-07 53.6 10.5 160 101-299 6-173 (187)
81 KOG0802 E3 ubiquitin ligase [P 96.5 0.00076 1.7E-08 72.9 0.6 42 373-414 289-340 (543)
82 PRK13406 bchD magnesium chelat 96.5 0.035 7.5E-07 60.9 13.1 156 98-284 401-559 (584)
83 PF14447 Prok-RING_4: Prokaryo 96.5 0.0014 3E-08 49.8 1.6 43 374-416 6-51 (55)
84 TIGR02031 BchD-ChlD magnesium 96.4 0.036 7.8E-07 60.8 12.9 154 99-282 408-570 (589)
85 KOG4159 Predicted E3 ubiquitin 96.4 0.0013 2.9E-08 68.4 1.3 45 372-416 81-130 (398)
86 TIGR03436 acidobact_VWFA VWFA- 96.3 0.038 8.2E-07 54.7 11.2 134 99-272 54-204 (296)
87 KOG4692 Predicted E3 ubiquitin 96.3 0.0017 3.8E-08 65.8 1.7 49 368-416 415-468 (489)
88 KOG3002 Zn finger protein [Gen 96.3 0.0018 3.8E-08 65.2 1.7 45 372-416 45-92 (299)
89 PF12861 zf-Apc11: Anaphase-pr 96.2 0.0025 5.4E-08 52.7 1.6 25 391-415 51-82 (85)
90 TIGR02442 Cob-chelat-sub cobal 95.8 0.17 3.6E-06 56.0 14.1 141 99-273 466-611 (633)
91 KOG1039 Predicted E3 ubiquitin 95.8 0.0041 8.9E-08 63.7 1.5 45 373-417 159-223 (344)
92 COG5236 Uncharacterized conser 95.5 0.0064 1.4E-07 61.7 1.8 46 372-417 58-110 (493)
93 KOG2660 Locus-specific chromos 95.3 0.0041 8.8E-08 62.7 -0.4 47 372-418 12-64 (331)
94 COG5152 Uncharacterized conser 95.3 0.0068 1.5E-07 57.3 1.1 42 376-417 197-243 (259)
95 KOG0297 TNF receptor-associate 95.0 0.016 3.5E-07 60.5 2.9 46 372-417 18-69 (391)
96 KOG1813 Predicted E3 ubiquitin 95.0 0.011 2.3E-07 59.0 1.5 43 376-418 242-289 (313)
97 KOG3039 Uncharacterized conser 94.7 0.015 3.3E-07 56.7 1.7 44 374-417 220-272 (303)
98 PF05762 VWA_CoxE: VWA domain 94.7 0.24 5.2E-06 47.5 9.9 105 99-234 58-162 (222)
99 PRK10997 yieM hypothetical pro 94.4 0.62 1.3E-05 50.1 13.1 144 99-283 324-469 (487)
100 PF04641 Rtf2: Rtf2 RING-finge 94.3 0.024 5.2E-07 55.8 2.1 45 372-416 110-162 (260)
101 KOG0825 PHD Zn-finger protein 94.2 0.011 2.5E-07 65.2 -0.3 45 374-418 122-174 (1134)
102 KOG0826 Predicted E3 ubiquitin 94.2 0.03 6.5E-07 56.6 2.6 50 373-422 298-355 (357)
103 KOG0828 Predicted E3 ubiquitin 94.1 0.018 3.8E-07 61.0 0.6 44 373-416 569-635 (636)
104 TIGR00868 hCaCC calcium-activa 94.0 0.35 7.7E-06 55.2 10.8 141 101-282 307-450 (863)
105 KOG1002 Nucleotide excision re 93.8 0.018 3.8E-07 61.4 -0.0 44 372-415 533-586 (791)
106 COG5222 Uncharacterized conser 93.4 0.032 7E-07 55.8 1.1 37 376-412 275-318 (427)
107 PF14570 zf-RING_4: RING/Ubox 93.4 0.035 7.7E-07 41.2 1.0 37 378-414 1-47 (48)
108 KOG1734 Predicted RING-contain 92.9 0.05 1.1E-06 53.8 1.5 43 373-415 222-281 (328)
109 COG5175 MOT2 Transcriptional r 92.1 0.063 1.4E-06 54.6 1.1 44 373-416 12-65 (480)
110 PF11793 FANCL_C: FANCL C-term 91.8 0.047 1E-06 43.4 -0.0 43 375-417 2-68 (70)
111 COG5219 Uncharacterized conser 90.3 0.083 1.8E-06 59.8 -0.0 45 372-416 1466-1524(1525)
112 PF10367 Vps39_2: Vacuolar sor 90.0 0.13 2.7E-06 42.9 0.9 31 373-403 76-109 (109)
113 KOG1001 Helicase-like transcri 89.3 0.12 2.5E-06 57.7 0.1 40 376-416 455-501 (674)
114 KOG1493 Anaphase-promoting com 89.2 0.084 1.8E-06 42.8 -0.8 39 377-415 33-81 (84)
115 PF11789 zf-Nse: Zinc-finger o 88.9 0.13 2.8E-06 39.4 0.1 37 373-409 9-53 (57)
116 KOG2932 E3 ubiquitin ligase in 88.9 0.16 3.4E-06 51.2 0.7 41 376-416 91-135 (389)
117 KOG1814 Predicted E3 ubiquitin 88.6 0.14 3E-06 53.3 0.2 30 374-403 183-216 (445)
118 KOG2114 Vacuolar assembly/sort 85.8 0.24 5.1E-06 55.7 -0.0 44 375-418 840-886 (933)
119 COG5194 APC11 Component of SCF 83.9 0.48 1E-05 38.9 1.0 25 391-415 53-81 (88)
120 KOG4445 Uncharacterized conser 83.0 0.21 4.6E-06 50.1 -1.7 40 376-415 116-186 (368)
121 smart00744 RINGv The RING-vari 81.9 0.64 1.4E-05 34.4 0.9 35 377-411 1-49 (49)
122 KOG3579 Predicted E3 ubiquitin 81.1 1.1 2.3E-05 44.9 2.4 30 373-402 266-300 (352)
123 COG4245 TerY Uncharacterized p 80.3 3 6.5E-05 39.7 4.9 143 100-283 5-160 (207)
124 COG1240 ChlD Mg-chelatase subu 78.8 13 0.00029 36.9 9.1 153 86-274 67-224 (261)
125 PF10272 Tmpp129: Putative tra 78.4 1.8 4E-05 44.8 3.2 23 394-416 313-352 (358)
126 PF05290 Baculo_IE-1: Baculovi 76.2 1.2 2.5E-05 40.0 0.9 43 375-417 80-134 (140)
127 KOG2034 Vacuolar sorting prote 76.0 0.88 1.9E-05 51.6 0.1 31 372-402 814-847 (911)
128 KOG1428 Inhibitor of type V ad 75.4 1 2.2E-05 53.6 0.3 45 372-416 3483-3545(3738)
129 COG2425 Uncharacterized protei 73.7 9.6 0.00021 40.6 7.0 97 151-269 308-405 (437)
130 KOG1941 Acetylcholine receptor 72.7 0.87 1.9E-05 47.4 -0.9 43 373-415 363-416 (518)
131 COG4548 NorD Nitric oxide redu 72.4 9.9 0.00021 41.4 6.8 167 99-297 447-619 (637)
132 KOG2817 Predicted E3 ubiquitin 72.3 1.5 3.2E-05 45.7 0.7 42 373-414 332-384 (394)
133 PF03854 zf-P11: P-11 zinc fin 71.4 1.5 3.3E-05 32.6 0.3 43 376-419 3-50 (50)
134 PHA03096 p28-like protein; Pro 70.5 1.6 3.5E-05 43.9 0.4 29 376-404 179-216 (284)
135 KOG3970 Predicted E3 ubiquitin 69.1 2.1 4.6E-05 41.6 0.9 41 376-416 51-106 (299)
136 KOG4362 Transcriptional regula 67.5 1.7 3.6E-05 48.4 -0.1 44 372-415 18-69 (684)
137 KOG0298 DEAD box-containing he 65.9 1.3 2.9E-05 52.1 -1.4 41 373-413 1151-1197(1394)
138 PF11775 CobT_C: Cobalamin bio 65.1 27 0.00058 34.0 7.5 51 220-272 134-187 (219)
139 PF07191 zinc-ribbons_6: zinc- 62.3 1.9 4.1E-05 34.6 -0.7 37 376-415 2-41 (70)
140 PF03731 Ku_N: Ku70/Ku80 N-ter 61.9 1.1E+02 0.0023 28.8 11.0 149 101-271 2-173 (224)
141 KOG1940 Zn-finger protein [Gen 59.2 2.6 5.6E-05 42.2 -0.5 41 377-418 160-209 (276)
142 KOG1812 Predicted E3 ubiquitin 58.6 4.4 9.6E-05 42.4 1.0 30 374-403 145-179 (384)
143 PHA02825 LAP/PHD finger-like p 58.5 6.2 0.00013 36.5 1.8 43 373-415 6-59 (162)
144 KOG2068 MOT2 transcription fac 58.2 21 0.00046 36.6 5.7 43 375-417 249-300 (327)
145 PF05883 Baculo_RING: Baculovi 55.8 3.4 7.3E-05 37.1 -0.3 30 375-404 26-65 (134)
146 PF01363 FYVE: FYVE zinc finge 54.3 5.2 0.00011 30.9 0.5 35 368-402 2-41 (69)
147 KOG0825 PHD Zn-finger protein 54.3 9.5 0.00021 43.2 2.7 27 391-417 120-156 (1134)
148 KOG2113 Predicted RNA binding 47.3 13 0.00028 38.0 2.2 47 374-420 342-392 (394)
149 KOG2930 SCF ubiquitin ligase, 43.6 8.6 0.00019 33.2 0.3 23 391-413 80-106 (114)
150 PF02891 zf-MIZ: MIZ/SP-RING z 43.5 11 0.00025 27.8 0.9 38 376-413 3-50 (50)
151 TIGR01651 CobT cobaltochelatas 43.1 90 0.002 34.7 7.9 62 208-273 502-568 (600)
152 KOG2807 RNA polymerase II tran 42.1 84 0.0018 32.5 7.0 114 99-226 61-223 (378)
153 KOG3113 Uncharacterized conser 41.2 15 0.00031 36.6 1.4 44 373-416 109-159 (293)
154 KOG3268 Predicted E3 ubiquitin 40.8 13 0.00029 35.0 1.1 45 374-418 164-231 (234)
155 cd03313 enolase Enolase: Enola 39.1 2.2E+02 0.0048 30.0 10.0 64 80-149 212-278 (408)
156 KOG2807 RNA polymerase II tran 38.3 20 0.00043 36.9 1.9 38 375-412 330-375 (378)
157 PF04710 Pellino: Pellino; In 37.4 11 0.00024 39.6 0.0 42 375-416 328-402 (416)
158 PLN00191 enolase 37.0 2.5E+02 0.0055 30.2 10.1 65 80-149 242-312 (457)
159 KOG1819 FYVE finger-containing 37.0 20 0.00043 38.8 1.8 38 365-402 891-933 (990)
160 KOG1952 Transcription factor N 36.4 15 0.00032 42.0 0.8 44 373-416 189-248 (950)
161 KOG1729 FYVE finger containing 33.8 17 0.00038 36.7 0.7 49 366-414 159-224 (288)
162 PF07975 C1_4: TFIIH C1-like d 33.1 29 0.00062 26.2 1.6 21 391-411 26-50 (51)
163 COG5109 Uncharacterized conser 32.6 18 0.00038 37.1 0.6 42 372-413 333-385 (396)
164 COG3959 Transketolase, N-termi 31.6 64 0.0014 31.7 4.1 37 218-267 138-174 (243)
165 PF14569 zf-UDP: Zinc-binding 31.5 34 0.00073 28.1 1.9 43 374-416 8-63 (80)
166 KOG3161 Predicted E3 ubiquitin 30.4 22 0.00048 39.6 0.9 24 388-412 29-54 (861)
167 PF10083 DUF2321: Uncharacteri 30.4 15 0.00033 33.8 -0.3 25 394-418 28-53 (158)
168 PF04216 FdhE: Protein involve 29.7 18 0.0004 36.0 0.1 46 374-419 171-226 (290)
169 PF00113 Enolase_C: Enolase, C 29.1 46 0.00099 33.7 2.8 148 77-267 76-233 (295)
170 smart00064 FYVE Protein presen 28.8 50 0.0011 25.2 2.5 35 369-403 4-43 (68)
171 PF10571 UPF0547: Uncharacteri 28.6 35 0.00075 22.1 1.2 11 377-387 2-12 (26)
172 COG1488 PncB Nicotinic acid ph 28.6 2.1E+02 0.0046 30.3 7.7 73 181-272 248-324 (405)
173 KOG2113 Predicted RNA binding 28.3 26 0.00057 35.9 0.9 47 372-418 133-186 (394)
174 KOG2353 L-type voltage-depende 28.3 4.8E+02 0.01 31.4 11.2 115 99-235 226-349 (1104)
175 KOG2789 Putative Zn-finger pro 28.0 30 0.00066 36.4 1.3 30 374-403 73-105 (482)
176 TIGR00578 ku70 ATP-dependent D 27.9 7.4E+02 0.016 27.4 12.2 155 100-271 12-182 (584)
177 COG4306 Uncharacterized protei 27.4 23 0.00049 31.7 0.3 23 395-417 29-52 (160)
178 KOG1815 Predicted E3 ubiquitin 27.4 28 0.00061 37.0 1.0 31 373-403 68-100 (444)
179 PF10235 Cript: Microtubule-as 27.3 32 0.0007 28.9 1.1 36 375-414 44-79 (90)
180 PF09297 zf-NADH-PPase: NADH p 27.1 15 0.00033 24.4 -0.7 19 394-412 3-29 (32)
181 KOG3053 Uncharacterized conser 26.2 23 0.00051 35.2 0.1 44 372-415 17-82 (293)
182 PF06415 iPGM_N: BPG-independe 25.5 1.4E+02 0.003 29.2 5.3 49 205-264 13-61 (223)
183 KOG3899 Uncharacterized conser 25.5 23 0.00051 35.9 0.0 12 405-416 355-366 (381)
184 PF14446 Prok-RING_1: Prokaryo 25.4 55 0.0012 25.0 2.0 41 374-414 4-51 (54)
185 TIGR00622 ssl1 transcription f 24.9 81 0.0017 27.6 3.2 36 376-411 56-110 (112)
186 KOG3799 Rab3 effector RIM1 and 24.4 27 0.00058 31.6 0.2 40 372-413 62-116 (169)
187 PRK03564 formate dehydrogenase 24.0 46 0.001 34.0 1.8 39 374-412 186-234 (309)
188 KOG3842 Adaptor protein Pellin 23.6 51 0.0011 33.9 1.9 26 391-416 377-415 (429)
189 COG3864 Uncharacterized protei 23.3 76 0.0016 32.8 3.1 49 199-271 325-373 (396)
190 TIGR01562 FdhE formate dehydro 23.0 59 0.0013 33.2 2.3 40 374-413 183-233 (305)
191 PF02601 Exonuc_VII_L: Exonucl 22.9 2.4E+02 0.0052 28.2 6.7 22 248-273 96-117 (319)
192 PF00158 Sigma54_activat: Sigm 22.7 92 0.002 28.5 3.4 25 245-269 5-29 (168)
193 KOG1202 Animal-type fatty acid 22.2 71 0.0015 38.6 2.9 70 152-235 2146-2221(2376)
194 PLN02189 cellulose synthase 21.4 53 0.0011 38.7 1.8 41 375-415 34-87 (1040)
195 PF13240 zinc_ribbon_2: zinc-r 21.3 36 0.00078 21.3 0.3 7 406-412 15-21 (23)
196 KOG1812 Predicted E3 ubiquitin 21.3 46 0.001 34.9 1.2 30 375-404 306-341 (384)
197 PF04811 Sec23_trunk: Sec23/Se 21.1 6.5E+02 0.014 23.9 9.1 95 132-228 20-142 (243)
198 cd08550 GlyDH-like Glycerol_de 21.0 1.8E+02 0.004 29.5 5.5 9 198-206 28-36 (349)
199 PRK09722 allulose-6-phosphate 21.0 2E+02 0.0044 28.0 5.5 53 199-269 144-197 (229)
200 PRK08091 ribulose-phosphate 3- 20.9 2E+02 0.0043 28.1 5.4 53 199-269 154-207 (228)
201 PLN02400 cellulose synthase 20.9 54 0.0012 38.8 1.7 41 375-415 36-89 (1085)
202 COG2816 NPY1 NTP pyrophosphohy 20.5 42 0.00091 33.8 0.7 24 391-414 108-139 (279)
No 1
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-84 Score=672.16 Aligned_cols=280 Identities=42% Similarity=0.671 Sum_probs=250.3
Q ss_pred cccccccCcchhhhcc--Cc-hhhccChhhhhhhcCCcc----cCCccccHHHHHHHHHhcCCccccceeeeeccCCCCC
Q 042398 41 ASSVSTSGTSSAAASA--TP-KENIISSARDKMKKKYSF----IPDTFSSLEQVTAALRDSGLESSNLILGIDFTKSNEW 113 (422)
Q Consensus 41 ~~~~~~~~~~~~~~~~--~~-~~~~i~~~~~~~k~~y~~----i~~~~~~ld~i~~~l~~~G~~~~nl~vaIDfT~SN~~ 113 (422)
.++..+-.|+.+.+.. .+ ...++|+|+|.|||+|+. +.+.|+.+++++-++..+|++++||+||||||+||||
T Consensus 221 ~~~ig~~~tt~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~vgIDfTaSNg~ 300 (529)
T KOG1327|consen 221 HDLIGKFQTTLSELQEPGSPNQIMLINPKKKAKKKSYKNSGQLILDRFTSLDQYSFLDYIAGGEQLNFTVGIDFTASNGD 300 (529)
T ss_pred cCceeEecccHHHhcccCCcccccccChhhhhhhhcccccceEEehheeehhhhhHHHHHccCceeeeEEEEEEeccCCC
Confidence 4555566677777743 33 358999999888886764 5577777777777777789999999999999999999
Q ss_pred CCCCCCCCCCcccCCCC-CCHHHHHHHHHhccccccCCCCCcceeeecCCCCCC---CCC--cccCCCCCCCCCHHHHHH
Q 042398 114 TGKVSFNNRSLHAIGDT-PNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHD---QEV--FSFHDDHTPCHGFEEVLA 187 (422)
Q Consensus 114 ~g~~~~~~~SLH~~~~~-~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~---~~v--f~~~~~~~~~~G~~gvl~ 187 (422)
|| ++.|||||+|. +|+||+||++||+||++||+||+||||||||+.|++ +|+ |+|+|.||+|+|++|||+
T Consensus 301 p~----~~sSLHyi~p~~~N~Y~~Ai~~vG~~lq~ydsdk~fpa~GFGakip~~~~vs~~f~ln~~~~~~~c~Gi~gVl~ 376 (529)
T KOG1327|consen 301 PR----NPSSLHYIDPHQPNPYEQAIRSVGETLQDYDSDKLFPAFGFGAKIPPDGQVSHEFVLNFNPEDPECRGIEGVLE 376 (529)
T ss_pred CC----CCCcceecCCCCCCHHHHHHHHHhhhhcccCCCCccccccccccCCCCcccccceeecCCCCCCccccHHHHHH
Confidence 77 45599999985 999999999999999999999999999999998774 454 567789999999999999
Q ss_pred HHHhhCCcccccCCCChHHHHHHHHHHHHHcC---CceEEEEEEeCCcccccCCCCCCCCchhHHHHHHHHHHhcCCCee
Q 042398 188 CYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSG---GQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLS 264 (422)
Q Consensus 188 ~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~---~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~AS~~PlS 264 (422)
||++++|+|+|+|||+|||||++|+++|+++. ++||||||||||+||| |++|++|||.||+||||
T Consensus 377 aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~~~~qY~VLlIitDG~vTd------------m~~T~~AIV~AS~lPlS 444 (529)
T KOG1327|consen 377 AYRKALPNVQLYGPTNFSPIINHVARIAQQSGNTAGQYHVLLIITDGVVTD------------MKETRDAIVSASDLPLS 444 (529)
T ss_pred HHHhhcccccccCCCccHHHHHHHHHHHHHhccCCcceEEEEEEeCCcccc------------HHHHHHHHHhhccCCeE
Confidence 99999999999999999999999999999886 8999999999999999 89999999999999999
Q ss_pred EEEEecCCCCccccccccCCCCC-------cccccceecchhhhhccCCCCChHHHHHHHHHHhcccHHHHHHHHhhcc
Q 042398 265 IVLVGVGDGPWEDMQKFDDKIPA-------REFDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQYKAAVELGIM 336 (422)
Q Consensus 265 IiiVGVG~~~f~~m~~LD~~~~~-------r~rDnvqFV~f~~~~~~~~~~~~~~~~la~~vL~EIP~Q~~~~~~~giL 336 (422)
||||||||+||++|++||++.+. |.|||||||+|++++.++.+...++++||+++|+|||+||+.||+++-+
T Consensus 445 IIiVGVGd~df~~M~~lD~d~~~l~~~gr~~~rD~vQFV~f~~~~~~~~~~~~~~~~lA~~vL~EIP~Q~~~y~~~~~~ 523 (529)
T KOG1327|consen 445 IIIVGVGDADFDMMRELDGDDPKLRSPGRIAERDNVQFVPFRDIMNGAENPSDKEAALALAVLAEIPQQYVQYMRLRGI 523 (529)
T ss_pred EEEEEeCCCCHHHHHHhhcCCcccccccccccccceEeecHHHHhhcCCcccchhHHHHHHHHHHhhHHHHHHHHhcCC
Confidence 99999999999999999987765 7899999999999999887778899999999999999999999998543
No 2
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=100.00 E-value=1.1e-74 Score=561.60 Aligned_cols=223 Identities=52% Similarity=0.861 Sum_probs=202.2
Q ss_pred ccccHHHHHHHHHhcCCccccceeeeeccCCCCCCCCCCCCCCCcccCCCC-CCHHHHHHHHHhccccccCCCCCcceee
Q 042398 80 TFSSLEQVTAALRDSGLESSNLILGIDFTKSNEWTGKVSFNNRSLHAIGDT-PNPYEKAITIIGKTLAPFDEDNLIPCFG 158 (422)
Q Consensus 80 ~~~~ld~i~~~l~~~G~~~~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~-~N~Y~~AI~~ig~il~~yD~D~~ip~~G 158 (422)
.|+||||+. +|++ +||+||||||+||||++ +++||||+++. +|+||+||++||+||++||+|++||+||
T Consensus 19 ~~tFldy~~-----~G~~-~nl~vaIDfT~SNg~p~----~~~SLHy~~~~~~N~Yq~aI~~vg~il~~yD~D~~ip~~G 88 (254)
T cd01459 19 QPTFLDYRS-----AGLE-SNLIVAIDFTKSNGWPG----EKRSLHYISPGRLNPYQKAIRIVGEVLQPYDSDKLIPAFG 88 (254)
T ss_pred CCCHHHHHh-----CCCe-eeEEEEEEeCCCCCCCC----CCCCcccCCCCCccHHHHHHHHHHHHHHhcCCCCceeeEe
Confidence 899999998 5555 89999999999999976 56899999885 8999999999999999999999999999
Q ss_pred ecCCCCCCCCC---cccCCCCCCCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcCC--ceEEEEEEeCCcc
Q 042398 159 FGDATTHDQEV---FSFHDDHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSGG--QYHVLVIIADGQV 233 (422)
Q Consensus 159 FGa~~~~~~~v---f~~~~~~~~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~~--~Y~VLlIiTDG~i 233 (422)
||++.+++..+ |++++++|+|.|++||+++|++++++|+|+|||+|+|||++|++++++... +|+||||||||+|
T Consensus 89 FGa~~~~~~~v~~~f~~~~~~p~~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~~~~~Y~VLLIiTDG~i 168 (254)
T cd01459 89 FGAIVTKDQSVFSFFPGYSESPECQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQSKYHILLIITDGEI 168 (254)
T ss_pred ecccCCCCCccccccCCCCCCCcccCHHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhcCCCceEEEEEECCCCc
Confidence 99998776555 444688999999999999999999999999999999999999999987643 4999999999999
Q ss_pred cccCCCCCCCCchhHHHHHHHHHHhcCCCeeEEEEecCCCCccccccccC-------CCCCcccccceecchhhhhccCC
Q 042398 234 TRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFDD-------KIPAREFDNFQFVNFTAIMSKNA 306 (422)
Q Consensus 234 ~d~~~~~~~~~~~~~~~T~~aIv~AS~~PlSIiiVGVG~~~f~~m~~LD~-------~~~~r~rDnvqFV~f~~~~~~~~ 306 (422)
+| +++|++||++||++||||||||||++||+.|++||+ ..+.|.|||||||+|++++...
T Consensus 169 ~D------------~~~t~~aIv~AS~~PlSIiiVGVGd~~F~~M~~LD~d~~l~~~~~~~~~rDnvqFV~f~~~~~~~- 235 (254)
T cd01459 169 TD------------MNETIKAIVEASKYPLSIVIVGVGDGPFDAMERLDDDDGLESSDGRIATRDIVQFVPFTEFMSNA- 235 (254)
T ss_pred cc------------HHHHHHHHHHHhcCCeEEEEEEeCCCChHHHHHhcCccccccccCCcceecceeeecchhhcccc-
Confidence 99 899999999999999999999999999999999997 3567789999999999997542
Q ss_pred CCChHHHHHHHHHHhcccHHH
Q 042398 307 TPSEKETAFALAALMEIPIQY 327 (422)
Q Consensus 307 ~~~~~~~~la~~vL~EIP~Q~ 327 (422)
..++++||+++|+|||+|+
T Consensus 236 --~~~~~~La~~~L~EiP~Q~ 254 (254)
T cd01459 236 --GNPEAALATAALAEIPSQL 254 (254)
T ss_pred --cccHHHHHHHHHHhccccC
Confidence 1356899999999999995
No 3
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=100.00 E-value=5.1e-51 Score=366.53 Aligned_cols=137 Identities=43% Similarity=0.875 Sum_probs=129.7
Q ss_pred CcccCCCC-CCHHHHHHHHHhccccccCCCCCcceeeecCCCCCC---CCCcccC--CCCCCCCCHHHHHHHHHhhCCcc
Q 042398 123 SLHAIGDT-PNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHD---QEVFSFH--DDHTPCHGFEEVLACYRNIVPNL 196 (422)
Q Consensus 123 SLH~~~~~-~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~---~~vf~~~--~~~~~~~G~~gvl~~Y~~~l~~v 196 (422)
||||+++. +|+||+||++||+||++||+||+||+|||||+.+++ +++|+|+ +++|+|.|++||+++|++++++|
T Consensus 1 SLH~~~~~~~N~Y~~ai~~vg~il~~Yd~dk~~p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~v 80 (146)
T PF07002_consen 1 SLHYISPNQPNPYQQAIRAVGEILQDYDSDKMIPAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPKV 80 (146)
T ss_pred CcccCCCCCCCHHHHHHHHHHHHHHhhccCCccceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhhe
Confidence 89999996 999999999999999999999999999999998876 4568776 67899999999999999999999
Q ss_pred cccCCCChHHHHHHHHHHHHH---cCCceEEEEEEeCCcccccCCCCCCCCchhHHHHHHHHHHhcCCCeeEEEEecC
Q 042398 197 RLAGPTSYAPVVEAAMDIVEK---SGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVG 271 (422)
Q Consensus 197 ~l~GPT~fapiI~~a~~~~~~---~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~AS~~PlSIiiVGVG 271 (422)
+|+|||+|+|||++|++++++ .+++||||||||||+|+| |++|++||++||++||||||||||
T Consensus 81 ~l~GPT~fapiI~~a~~~a~~~~~~~~~Y~iLlIlTDG~i~D------------~~~T~~aIv~AS~~PlSIIiVGVG 146 (146)
T PF07002_consen 81 QLSGPTNFAPIINHAAKIAKQSNQNGQQYFILLILTDGQITD------------MEETIDAIVEASKLPLSIIIVGVG 146 (146)
T ss_pred EECCCccHHHHHHHHHHHHhhhccCCceEEEEEEeccccccc------------HHHHHHHHHHHccCCeEEEEEEeC
Confidence 999999999999999999984 567999999999999999 899999999999999999999999
No 4
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=99.96 E-value=8.6e-29 Score=231.91 Aligned_cols=197 Identities=25% Similarity=0.308 Sum_probs=166.3
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCCCcceeeecCCCCCCCCCcccCCCCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHTP 178 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~~ 178 (422)
..+.+.||-|+|+.. .|- ....|.+++++..+...||+|+.+++|.||....+..++ .
T Consensus 2 ArV~LVLD~SGSM~~-----------~yk---~G~vQ~~~Er~lalA~~~DdDG~i~v~~Fs~~~~~~~~v--------t 59 (200)
T PF10138_consen 2 ARVYLVLDISGSMRP-----------LYK---DGTVQRVVERILALAAQFDDDGEIDVWFFSTEFDRLPDV--------T 59 (200)
T ss_pred cEEEEEEeCCCCCch-----------hhh---CccHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCcCCCc--------C
Confidence 357889999999941 122 257899999999999999999999999999987666655 3
Q ss_pred CCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHc-CC-ceEEEEEEeCCcccccCCCCCCCCchhHHHHHHHHH
Q 042398 179 CHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKS-GG-QYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIV 256 (422)
Q Consensus 179 ~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~-~~-~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv 256 (422)
...++++++.....++.+...|-|+++|||+.|++...++ .. .....|+||||.++| .+++.++|+
T Consensus 60 ~~~~~~~v~~~~~~~~~~~~~G~t~y~~vm~~v~~~y~~~~~~~~P~~VlFiTDG~~~~------------~~~~~~~i~ 127 (200)
T PF10138_consen 60 LDNYEGYVDELHAGLPDWGRMGGTNYAPVMEDVLDHYFKREPSDAPALVLFITDGGPDD------------RRAIEKLIR 127 (200)
T ss_pred HHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHhhcCCCCCCeEEEEEecCCccc------------hHHHHHHHH
Confidence 3567787766655555556567799999999999987744 22 356668889999998 789999999
Q ss_pred HhcCCCeeEEEEecCCCCccccccccCCCCCcccccceecchhhhhccCCCCChHHHHHHHHHHhcccHHHHHHHHhhcc
Q 042398 257 AASSYPLSIVLVGVGDGPWEDMQKFDDKIPAREFDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQYKAAVELGIM 336 (422)
Q Consensus 257 ~AS~~PlSIiiVGVG~~~f~~m~~LD~~~~~r~rDnvqFV~f~~~~~~~~~~~~~~~~la~~vL~EIP~Q~~~~~~~giL 336 (422)
+||++||+|+|||||+.+|+.+++||+ +.+|.+||+.|+...++. ..++++|+..+|.|+|.|+.++..+|+|
T Consensus 128 ~as~~pifwqFVgiG~~~f~fL~kLD~-l~gR~vDNa~Ff~~~d~~------~lsD~eLy~~LL~Efp~Wl~~ar~~gi~ 200 (200)
T PF10138_consen 128 EASDEPIFWQFVGIGDSNFGFLEKLDD-LAGRVVDNAGFFAIDDID------ELSDEELYDRLLAEFPDWLKAARAKGIL 200 (200)
T ss_pred hccCCCeeEEEEEecCCcchHHHHhhc-cCCcccCCcCeEecCCcc------cCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999 589999999999998874 3567899999999999999999999875
No 5
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.81 E-value=1e-19 Score=170.06 Aligned_cols=169 Identities=17% Similarity=0.224 Sum_probs=128.3
Q ss_pred cceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCCCcceeeecCCCCCCCCCcccCCCCCCC
Q 042398 100 NLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHTPC 179 (422)
Q Consensus 100 nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~~~ 179 (422)
++++.||.|+|+++.. .+.++| ..+.+++++..++.++..||.|+...+|+||.... .++.
T Consensus 4 dvv~~ID~SgSM~~~~----~~~~~~----k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~----~~~~------- 64 (199)
T cd01457 4 DYTLLIDKSGSMAEAD----EAKERS----RWEEAQESTRALARKCEEYDSDGITVYLFSGDFRR----YDNV------- 64 (199)
T ss_pred CEEEEEECCCcCCCCC----CCCCch----HHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCccc----cCCc-------
Confidence 6899999999998532 122333 35899999999999999999999777777766421 1211
Q ss_pred CCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHH-HHHc-C----CceEEEEEEeCCcccccCCCCCCCCchhHHHHHH
Q 042398 180 HGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDI-VEKS-G----GQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIK 253 (422)
Q Consensus 180 ~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~-~~~~-~----~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~ 253 (422)
. .+++.++|.+ +...|+|++.+.|+.+++. .+.. . ..|.+++|||||+.+| .+++.+
T Consensus 65 ~-~~~v~~~~~~----~~p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d------------~~~~~~ 127 (199)
T cd01457 65 N-SSKVDQLFAE----NSPDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDD------------KDAVER 127 (199)
T ss_pred C-HHHHHHHHhc----CCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCc------------HHHHHH
Confidence 1 5667676654 4456999999999999753 3221 1 1388999999999987 678899
Q ss_pred HHHHhcCC-----CeeEEEEecCCC--CccccccccCCC--CCcccccceecchhhhhcc
Q 042398 254 SIVAASSY-----PLSIVLVGVGDG--PWEDMQKFDDKI--PAREFDNFQFVNFTAIMSK 304 (422)
Q Consensus 254 aIv~AS~~-----PlSIiiVGVG~~--~f~~m~~LD~~~--~~r~rDnvqFV~f~~~~~~ 304 (422)
+|++|++. +|.|.|||||++ .|..|++||+.+ .++.||||+||+|.++...
T Consensus 128 ~i~~a~~~l~~~~~i~i~~v~vG~~~~~~~~L~~ld~~~~~~~~~~d~vd~~~~~~~~~~ 187 (199)
T cd01457 128 VIIKASDELDADNELAISFLQIGRDPAATAFLKALDDQLQEVGAKFDIVDTVTWDDMERL 187 (199)
T ss_pred HHHHHHHhhccccCceEEEEEeCCcHHHHHHHHHHhHHHHhcCCcccceeeeeHHhhhcC
Confidence 99999873 888999999885 799999999753 3467899999999998653
No 6
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=98.72 E-value=8.9e-08 Score=85.03 Aligned_cols=149 Identities=21% Similarity=0.354 Sum_probs=108.6
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCC---CCCcceeeecCCCCCCCCCcccCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDE---DNLIPCFGFGDATTHDQEVFSFHDD 175 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~---D~~ip~~GFGa~~~~~~~vf~~~~~ 175 (422)
.++++.||-|.|+. ......+...+..++..+.. +..|-+++|++... ..+++.
T Consensus 2 ~~v~l~vD~S~SM~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~---~~~~~~-- 58 (177)
T smart00327 2 LDVVFLLDGSGSMG------------------PNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDAT---VLFPLN-- 58 (177)
T ss_pred ccEEEEEeCCCccc------------------hHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCce---EEEccc--
Confidence 47899999999983 13445555555555555554 88999999998532 222221
Q ss_pred CCCCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHc--C---CceEEEEEEeCCcccccCCCCCCCCchhHHH
Q 042398 176 HTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKS--G---GQYHVLVIIADGQVTRSVNTGDGELSSQEQK 250 (422)
Q Consensus 176 ~~~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~--~---~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~ 250 (422)
...+.+.+.+......+. ..|.|++...|+++++..+.. . +...+++|||||...+. +.
T Consensus 59 --~~~~~~~~~~~i~~~~~~--~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~~------------~~ 122 (177)
T smart00327 59 --DSRSKDALLEALASLSYK--LGGGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESNDG------------GD 122 (177)
T ss_pred --ccCCHHHHHHHHHhcCCC--CCCCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCCC------------cc
Confidence 346778887777665543 578899999999999886521 1 12579999999999872 35
Q ss_pred HHHHHHHhcCCCeeEEEEecCCC-CccccccccCCCC
Q 042398 251 TIKSIVAASSYPLSIVLVGVGDG-PWEDMQKFDDKIP 286 (422)
Q Consensus 251 T~~aIv~AS~~PlSIiiVGVG~~-~f~~m~~LD~~~~ 286 (422)
+.+++..+....+.|++||+|+. +.+.|+.|.....
T Consensus 123 ~~~~~~~~~~~~i~i~~i~~~~~~~~~~l~~~~~~~~ 159 (177)
T smart00327 123 LLKAAKELKRSGVKVFVVGVGNDVDEEELKKLASAPG 159 (177)
T ss_pred HHHHHHHHHHCCCEEEEEEccCccCHHHHHHHhCCCc
Confidence 77778888888899999999998 8999999987543
No 7
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.59 E-value=1.1e-08 Score=75.75 Aligned_cols=43 Identities=49% Similarity=1.239 Sum_probs=35.5
Q ss_pred cCCcccccccccccc-cccCCCc-cchhhhhcC----CCCCCccccccC
Q 042398 374 ETQACPICLTNAKDL-AFGCGHM-TCRECGSRV----SNCPICRQRITN 416 (422)
Q Consensus 374 e~~~CpIC~~~~~~v-~l~CGH~-fC~~Ci~~~----~~CP~CR~~i~~ 416 (422)
|+..|.||++...++ .++|||. ||..|+.++ ..||+||++|+.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 357899999999994 5599999 999999977 789999999875
No 8
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=98.58 E-value=6.2e-07 Score=80.22 Aligned_cols=147 Identities=20% Similarity=0.278 Sum_probs=103.3
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCCCcceeeecCCCCCCCCCcccCCCCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHTP 178 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~~ 178 (422)
.++++.+|.|.|+.. ...+.|-.++..++..++.+..|-+++|+...... +.. +.
T Consensus 3 ~~v~~vlD~S~SM~~------------------~~~~~~~~al~~~l~~l~~~~~~~l~~Fs~~~~~~---~~~----~~ 57 (171)
T cd01461 3 KEVVFVIDTSGSMSG------------------TKIEQTKEALLTALKDLPPGDYFNIIGFSDTVEEF---SPS----SV 57 (171)
T ss_pred ceEEEEEECCCCCCC------------------hhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCceee---cCc----ce
Confidence 478999999999941 13667777777788888877789999999874321 111 01
Q ss_pred CCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcCCceEEEEEEeCCcccccCCCCCCCCchhHHHHHHHHHHh
Q 042398 179 CHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAA 258 (422)
Q Consensus 179 ~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~A 258 (422)
..+.+.+ +...+.+..+...|-|++...|+.+.+..+...+.--++++||||..++ .+++.+++.++
T Consensus 58 ~~~~~~~-~~~~~~l~~~~~~g~T~l~~al~~a~~~l~~~~~~~~~iillTDG~~~~------------~~~~~~~~~~~ 124 (171)
T cd01461 58 SATAENV-AAAIEYVNRLQALGGTNMNDALEAALELLNSSPGSVPQIILLTDGEVTN------------ESQILKNVREA 124 (171)
T ss_pred eCCHHHH-HHHHHHHHhcCCCCCcCHHHHHHHHHHhhccCCCCccEEEEEeCCCCCC------------HHHHHHHHHHh
Confidence 1222222 2333445556668999999999999888765333457889999999765 45777888888
Q ss_pred cCCCeeEEEEecCC-CCccccccccC
Q 042398 259 SSYPLSIVLVGVGD-GPWEDMQKFDD 283 (422)
Q Consensus 259 S~~PlSIiiVGVG~-~~f~~m~~LD~ 283 (422)
.+.++.|..||+|. .+...|+.+-+
T Consensus 125 ~~~~i~i~~i~~g~~~~~~~l~~ia~ 150 (171)
T cd01461 125 LSGRIRLFTFGIGSDVNTYLLERLAR 150 (171)
T ss_pred cCCCceEEEEEeCCccCHHHHHHHHH
Confidence 77788999999996 46667776654
No 9
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=4e-08 Score=90.47 Aligned_cols=49 Identities=37% Similarity=0.997 Sum_probs=39.9
Q ss_pred CcCCccccccccccc---ccccCCCccchhhhhcC----CCCCCccccccCc--cccC
Q 042398 373 AETQACPICLTNAKD---LAFGCGHMTCRECGSRV----SNCPICRQRITNR--LRLF 421 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~---v~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~~--i~vy 421 (422)
+....||||++-... +...|||+||..|++.. ..||+||+.|+.+ ++||
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 445899999998887 34699999999999954 6899999988753 5655
No 10
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.1e-08 Score=76.94 Aligned_cols=47 Identities=38% Similarity=1.041 Sum_probs=41.4
Q ss_pred Cccccccccccc-ccccCCCcc-chhhhhcC-----CCCCCccccccCccccCC
Q 042398 376 QACPICLTNAKD-LAFGCGHMT-CRECGSRV-----SNCPICRQRITNRLRLFA 422 (422)
Q Consensus 376 ~~CpIC~~~~~~-v~l~CGH~f-C~~Ci~~~-----~~CP~CR~~i~~~i~vy~ 422 (422)
.+|.||++.+.+ +..-|||++ |.+|..++ ..||+||++|..+|+.|+
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~ 61 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYR 61 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhc
Confidence 689999999999 555999996 99998865 479999999999999885
No 11
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=4.5e-08 Score=93.55 Aligned_cols=49 Identities=33% Similarity=0.790 Sum_probs=41.5
Q ss_pred CcCCccccccccccc-ccccCCCccchhhhhcC-------CCCCCcccccc--CccccC
Q 042398 373 AETQACPICLTNAKD-LAFGCGHMTCRECGSRV-------SNCPICRQRIT--NRLRLF 421 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~-------~~CP~CR~~i~--~~i~vy 421 (422)
.....|.||+|..++ ++..|||.||+-|+-+| +.||+|+..++ +.+.||
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 456899999999999 66699999999999987 57999999985 456665
No 12
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=98.42 E-value=1.9e-06 Score=79.89 Aligned_cols=148 Identities=14% Similarity=0.241 Sum_probs=98.5
Q ss_pred cccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCCCcceeeecCCCCCCCCCcccCCCC-
Q 042398 98 SSNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDH- 176 (422)
Q Consensus 98 ~~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~- 176 (422)
..++++.||-|+|+.. +..+.|-..+..++..+..+..|-++.|+..... ++++..+.
T Consensus 13 p~~vv~llD~SgSM~~------------------~~l~~ak~~~~~ll~~l~~~d~v~lv~F~~~~~~---~~~~~~~~~ 71 (190)
T cd01463 13 PKDIVILLDVSGSMTG------------------QRLHLAKQTVSSILDTLSDNDFFNIITFSNEVNP---VVPCFNDTL 71 (190)
T ss_pred CceEEEEEECCCCCCc------------------HHHHHHHHHHHHHHHhCCCCCEEEEEEeCCCeeE---Eeeecccce
Confidence 4789999999999951 2455666666666777777778999999987432 22221110
Q ss_pred --CCCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHH---c------CCceEEEEEEeCCcccccCCCCCCCCc
Q 042398 177 --TPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEK---S------GGQYHVLVIIADGQVTRSVNTGDGELS 245 (422)
Q Consensus 177 --~~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~---~------~~~Y~VLlIiTDG~i~d~~~~~~~~~~ 245 (422)
......+.+ .+.+..++..|.|++...|+.+.+...+ . ...-.++++||||..++
T Consensus 72 ~~~~~~~~~~~----~~~l~~l~~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~---------- 137 (190)
T cd01463 72 VQATTSNKKVL----KEALDMLEAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPEN---------- 137 (190)
T ss_pred EecCHHHHHHH----HHHHhhCCCCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCc----------
Confidence 001123333 3445677788999999999999877654 1 12236789999998876
Q ss_pred hhHHHHHHHHHHh--cCCCeeEEEEecCCC--Ccccccccc
Q 042398 246 SQEQKTIKSIVAA--SSYPLSIVLVGVGDG--PWEDMQKFD 282 (422)
Q Consensus 246 ~~~~~T~~aIv~A--S~~PlSIiiVGVG~~--~f~~m~~LD 282 (422)
..+..+++... ...|+-|..||||.+ +...|+.|=
T Consensus 138 --~~~~~~~~~~~~~~~~~v~i~tigiG~~~~d~~~L~~lA 176 (190)
T cd01463 138 --YKEIFDKYNWDKNSEIPVRVFTYLIGREVTDRREIQWMA 176 (190)
T ss_pred --HhHHHHHhcccccCCCcEEEEEEecCCccccchHHHHHH
Confidence 34445554322 235899999999975 577777764
No 13
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=98.42 E-value=2.5e-06 Score=78.38 Aligned_cols=170 Identities=12% Similarity=0.153 Sum_probs=108.4
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccC---CCCCcceeeecCCCCCCCCCcccCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFD---EDNLIPCFGFGDATTHDQEVFSFHDD 175 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD---~D~~ip~~GFGa~~~~~~~vf~~~~~ 175 (422)
+++.+.||-|+|.+. .|-+.++...+..+++.+. ++-.+-++.|+.... .++++...
T Consensus 1 ~Dv~~vlD~SgSm~~-----------------~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~---~~~~l~~~ 60 (186)
T cd01471 1 LDLYLLVDGSGSIGY-----------------SNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAK---ELIRLSSP 60 (186)
T ss_pred CcEEEEEeCCCCccc-----------------hhhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCce---EEEECCCc
Confidence 368899999999852 1225566666777777664 445799999997532 23444321
Q ss_pred CCCCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHc----CCceEEEEEEeCCcccccCCCCCCCCchhHHHH
Q 042398 176 HTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKS----GGQYHVLVIIADGQVTRSVNTGDGELSSQEQKT 251 (422)
Q Consensus 176 ~~~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~----~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T 251 (422)
. -...+.+.+.-..........|-|++++.++.+.+...+. ...-.+++|||||..++. .++
T Consensus 61 ~--~~~~~~~~~~i~~l~~~~~~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~------------~~~ 126 (186)
T cd01471 61 N--STNKDLALNAIRALLSLYYPNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDSK------------FRT 126 (186)
T ss_pred c--ccchHHHHHHHHHHHhCcCCCCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCCC------------cch
Confidence 1 1123332222233333445689999999999999877542 122357789999997662 344
Q ss_pred HHHHHHhcCCCeeEEEEecCC-CCccccccccCCC-CCcccccceecchhhhh
Q 042398 252 IKSIVAASSYPLSIVLVGVGD-GPWEDMQKFDDKI-PAREFDNFQFVNFTAIM 302 (422)
Q Consensus 252 ~~aIv~AS~~PlSIiiVGVG~-~~f~~m~~LD~~~-~~r~rDnvqFV~f~~~~ 302 (422)
.++..++.+.++-|.+||||. .+.+.|+.|-+.. .....+++-+.+|+++.
T Consensus 127 ~~~a~~l~~~gv~v~~igiG~~~d~~~l~~ia~~~~~~~~~~~~~~~~~~~~~ 179 (186)
T cd01471 127 LKEARKLRERGVIIAVLGVGQGVNHEENRSLVGCDPDDSPCPLYLQSSWSEVQ 179 (186)
T ss_pred hHHHHHHHHCCCEEEEEEeehhhCHHHHHHhcCCCCCCCCCCeeecCCHHHHH
Confidence 555555556789999999997 5777788776532 12224777777777764
No 14
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.42 E-value=9.6e-08 Score=89.59 Aligned_cols=45 Identities=29% Similarity=0.840 Sum_probs=38.2
Q ss_pred CCcCCccccccccccc-ccccCCCccchhhhhcC--------------------CCCCCccccccC
Q 042398 372 VAETQACPICLTNAKD-LAFGCGHMTCRECGSRV--------------------SNCPICRQRITN 416 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~--------------------~~CP~CR~~i~~ 416 (422)
..++..|+||++..++ ++++|||.||+.|+.+| ..||+||..++.
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 4567899999999999 56699999999999753 369999999864
No 15
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=98.40 E-value=4.1e-06 Score=71.98 Aligned_cols=147 Identities=14% Similarity=0.307 Sum_probs=98.9
Q ss_pred cceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCC---CCCcceeeecCCCCCCCCCcccCCCC
Q 042398 100 NLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDE---DNLIPCFGFGDATTHDQEVFSFHDDH 176 (422)
Q Consensus 100 nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~---D~~ip~~GFGa~~~~~~~vf~~~~~~ 176 (422)
++++.||.|+|.+ ...++++...+..++..+.. ...+-+++|+.... ..+.++.
T Consensus 2 ~v~~viD~S~Sm~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~---~~~~~~~-- 58 (161)
T cd00198 2 DIVFLLDVSGSMG------------------GEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNAR---VVLPLTT-- 58 (161)
T ss_pred cEEEEEeCCCCcC------------------cchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccc---eeecccc--
Confidence 6889999998872 23455666666666666665 77899999997421 1222221
Q ss_pred CCCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHc--CCceEEEEEEeCCcccccCCCCCCCCchhHHHHHHH
Q 042398 177 TPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKS--GGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKS 254 (422)
Q Consensus 177 ~~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~--~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~a 254 (422)
....+.+.+.-.. +.. ...|.|++...++.+.+...+. .....++++||||..++. .....+.
T Consensus 59 --~~~~~~~~~~~~~-~~~-~~~~~t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~-----------~~~~~~~ 123 (161)
T cd00198 59 --DTDKADLLEAIDA-LKK-GLGGGTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDG-----------PELLAEA 123 (161)
T ss_pred --cCCHHHHHHHHHh-ccc-CCCCCccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCC-----------cchhHHH
Confidence 1233344333222 222 4789999999999999887663 456889999999988762 1245556
Q ss_pred HHHhcCCCeeEEEEecCC-CCccccccccCC
Q 042398 255 IVAASSYPLSIVLVGVGD-GPWEDMQKFDDK 284 (422)
Q Consensus 255 Iv~AS~~PlSIiiVGVG~-~~f~~m~~LD~~ 284 (422)
+..+....+.|.+||+|+ .+-..++.|+..
T Consensus 124 ~~~~~~~~v~v~~v~~g~~~~~~~l~~l~~~ 154 (161)
T cd00198 124 ARELRKLGITVYTIGIGDDANEDELKEIADK 154 (161)
T ss_pred HHHHHHcCCEEEEEEcCCCCCHHHHHHHhcc
Confidence 666777799999999999 666677777653
No 16
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.38 E-value=9.5e-08 Score=68.62 Aligned_cols=33 Identities=52% Similarity=1.222 Sum_probs=25.5
Q ss_pred cccccccccc-ccccCCCccchhhhhcC--------CCCCCc
Q 042398 378 CPICLTNAKD-LAFGCGHMTCRECGSRV--------SNCPIC 410 (422)
Q Consensus 378 CpIC~~~~~~-v~l~CGH~fC~~Ci~~~--------~~CP~C 410 (422)
|+||++.+.+ ++++|||+||..|+.++ ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999 77899999999999953 368887
No 17
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.2e-07 Score=93.02 Aligned_cols=44 Identities=34% Similarity=0.890 Sum_probs=38.5
Q ss_pred CcCCccccccccccc-ccccCCCccchhhhhcC----CCCCCccccccC
Q 042398 373 AETQACPICLTNAKD-LAFGCGHMTCRECGSRV----SNCPICRQRITN 416 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~ 416 (422)
+....|.+|++...+ ..+||||.||+.|+..| ..||+||..++.
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence 445799999999999 56799999999999977 579999999865
No 18
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=6.1e-08 Score=95.14 Aligned_cols=49 Identities=43% Similarity=1.112 Sum_probs=44.9
Q ss_pred cCCccccccccccc-ccccCCCcc-chhhhhcCCCCCCccccccCccccCC
Q 042398 374 ETQACPICLTNAKD-LAFGCGHMT-CRECGSRVSNCPICRQRITNRLRLFA 422 (422)
Q Consensus 374 e~~~CpIC~~~~~~-v~l~CGH~f-C~~Ci~~~~~CP~CR~~i~~~i~vy~ 422 (422)
....|.||++.+.+ +.|+|||+. |.+|.+++..||+||+.|.+..|+|+
T Consensus 299 ~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif~ 349 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIFR 349 (350)
T ss_pred HHHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhhc
Confidence 36799999999999 556999996 99999999999999999999999985
No 19
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.30 E-value=2.8e-06 Score=77.60 Aligned_cols=145 Identities=19% Similarity=0.232 Sum_probs=95.9
Q ss_pred cccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccC---CCCCcceeeecCCCCCCCCCcccCC
Q 042398 98 SSNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFD---EDNLIPCFGFGDATTHDQEVFSFHD 174 (422)
Q Consensus 98 ~~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD---~D~~ip~~GFGa~~~~~~~vf~~~~ 174 (422)
.+++++.||.|+|... .. ...-.+|+..+...|...+ .+-.+-++.|+.... .++++..
T Consensus 3 ~~~v~~llD~SgSM~~--------~~-------~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~---~~~~l~~ 64 (176)
T cd01464 3 RLPIYLLLDTSGSMAG--------EP-------IEALNQGLQMLQSELRQDPYALESVEISVITFDSAAR---VIVPLTP 64 (176)
T ss_pred CCCEEEEEECCCCCCC--------hH-------HHHHHHHHHHHHHHHhcChhhccccEEEEEEecCCce---EecCCcc
Confidence 3688999999999952 11 1233455665555554432 345799999998532 2344432
Q ss_pred CCCCCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcCCc---------eEEEEEEeCCcccccCCCCCCCCc
Q 042398 175 DHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSGGQ---------YHVLVIIADGQVTRSVNTGDGELS 245 (422)
Q Consensus 175 ~~~~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~~~---------Y~VLlIiTDG~i~d~~~~~~~~~~ 245 (422)
. . ......+...|-|++...++++.+......+. -.++++||||+.+|.
T Consensus 65 ~-------~------~~~~~~l~~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~--------- 122 (176)
T cd01464 65 L-------E------SFQPPRLTASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDD--------- 122 (176)
T ss_pred H-------H------hcCCCcccCCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCch---------
Confidence 1 1 11245567789999999999999876442111 247899999998762
Q ss_pred hhHHHHHHHHHHhcCCCeeEEEEecCC-CCccccccccCC
Q 042398 246 SQEQKTIKSIVAASSYPLSIVLVGVGD-GPWEDMQKFDDK 284 (422)
Q Consensus 246 ~~~~~T~~aIv~AS~~PlSIiiVGVG~-~~f~~m~~LD~~ 284 (422)
.....+++.++-..++-|..||||. .+.+.|++|-+.
T Consensus 123 --~~~~~~~~~~~~~~~~~i~~igiG~~~~~~~L~~ia~~ 160 (176)
T cd01464 123 --LTAAIERIKEARDSKGRIVACAVGPKADLDTLKQITEG 160 (176)
T ss_pred --HHHHHHHHHhhcccCCcEEEEEeccccCHHHHHHHHCC
Confidence 2334477877777789999999995 677778877654
No 20
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=98.26 E-value=4.7e-06 Score=73.05 Aligned_cols=145 Identities=16% Similarity=0.246 Sum_probs=95.8
Q ss_pred cceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccc---cccCCCCCcceeeecCCCCCCCCCcccCCCC
Q 042398 100 NLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTL---APFDEDNLIPCFGFGDATTHDQEVFSFHDDH 176 (422)
Q Consensus 100 nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il---~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~ 176 (422)
++++.+|.|+|... ..++.+...+..++ ...+.+-.+-++.|++... .++++....
T Consensus 2 di~~llD~S~Sm~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~---~~~~~~~~~ 60 (161)
T cd01450 2 DIVFLLDGSESVGP------------------ENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVR---VEFSLNDYK 60 (161)
T ss_pred cEEEEEeCCCCcCH------------------HHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCce---EEEECCCCC
Confidence 67899999999851 13344444444444 4444578899999998642 233332221
Q ss_pred CCCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcC----CceEEEEEEeCCcccccCCCCCCCCchhHHHHH
Q 042398 177 TPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSG----GQYHVLVIIADGQVTRSVNTGDGELSSQEQKTI 252 (422)
Q Consensus 177 ~~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~----~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~ 252 (422)
..+.+.+......... .|-|++...++.+.+...+.. ....++++||||..++. .+..
T Consensus 61 ----~~~~~~~~i~~~~~~~--~~~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~------------~~~~ 122 (161)
T cd01450 61 ----SKDDLLKAVKNLKYLG--GGGTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDG------------GDPK 122 (161)
T ss_pred ----CHHHHHHHHHhcccCC--CCCccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCC------------cchH
Confidence 3455555444322111 147999999999998876553 56788999999988762 1344
Q ss_pred HHHHHhcCCCeeEEEEecCCCCccccccccC
Q 042398 253 KSIVAASSYPLSIVLVGVGDGPWEDMQKFDD 283 (422)
Q Consensus 253 ~aIv~AS~~PlSIiiVGVG~~~f~~m~~LD~ 283 (422)
+++....+..+-|++||+|..+.+.|++|-+
T Consensus 123 ~~~~~~~~~~v~v~~i~~g~~~~~~l~~la~ 153 (161)
T cd01450 123 EAAAKLKDEGIKVFVVGVGPADEEELREIAS 153 (161)
T ss_pred HHHHHHHHCCCEEEEEeccccCHHHHHHHhC
Confidence 5555555668999999999988888887754
No 21
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.25 E-value=4.1e-07 Score=88.34 Aligned_cols=45 Identities=29% Similarity=0.806 Sum_probs=36.5
Q ss_pred cCCccccccccccc---------ccccCCCccchhhhhcC----CCCCCccccccCcc
Q 042398 374 ETQACPICLTNAKD---------LAFGCGHMTCRECGSRV----SNCPICRQRITNRL 418 (422)
Q Consensus 374 e~~~CpIC~~~~~~---------v~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~~i 418 (422)
++..|+||++.+.+ ++.+|+|.||..|+..| ..||+||.++...+
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~ 230 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVI 230 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEe
Confidence 35799999997654 23489999999999866 68999999987654
No 22
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=98.21 E-value=2e-05 Score=70.48 Aligned_cols=147 Identities=14% Similarity=0.189 Sum_probs=96.4
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCCCcceeeecCCCCCCCCCcccCCCCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHTP 178 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~~ 178 (422)
+|+++.+|.|.|... ..++.|..++..++..+..+..+-++.|+.... .++.+.+.
T Consensus 1 ~~~~~vlD~S~SM~~------------------~~~~~~k~a~~~~~~~l~~~~~v~li~f~~~~~---~~~~~~~~--- 56 (170)
T cd01465 1 LNLVFVIDRSGSMDG------------------PKLPLVKSALKLLVDQLRPDDRLAIVTYDGAAE---TVLPATPV--- 56 (170)
T ss_pred CcEEEEEECCCCCCC------------------hhHHHHHHHHHHHHHhCCCCCEEEEEEecCCcc---EEecCccc---
Confidence 478999999999841 125677777777888887777899999998632 22332221
Q ss_pred CCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcC--CceEEEEEEeCCcccccCCCCCCCCchhHHHHHHHHH
Q 042398 179 CHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSG--GQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIV 256 (422)
Q Consensus 179 ~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~--~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv 256 (422)
...+.+. +.+.+++..|.|++..-++.+.+..++.. ..--.+++||||..++.. ...++..+++.
T Consensus 57 -~~~~~l~----~~l~~~~~~g~T~~~~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~--------~~~~~~~~~~~ 123 (170)
T cd01465 57 -RDKAAIL----AAIDRLTAGGSTAGGAGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGE--------TDPDELARLVA 123 (170)
T ss_pred -chHHHHH----HHHHcCCCCCCCCHHHHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCC--------CCHHHHHHHHH
Confidence 1223333 33445566899999999999998876532 223557899999876511 11345556666
Q ss_pred HhcCCCeeEEEEecCCC-Ccccccccc
Q 042398 257 AASSYPLSIVLVGVGDG-PWEDMQKFD 282 (422)
Q Consensus 257 ~AS~~PlSIiiVGVG~~-~f~~m~~LD 282 (422)
.+.+..+-|..||+|.. +...|+++=
T Consensus 124 ~~~~~~v~i~~i~~g~~~~~~~l~~ia 150 (170)
T cd01465 124 QKRESGITLSTLGFGDNYNEDLMEAIA 150 (170)
T ss_pred HhhcCCeEEEEEEeCCCcCHHHHHHHH
Confidence 66667888999999943 444555543
No 23
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=98.17 E-value=1.1e-05 Score=72.42 Aligned_cols=141 Identities=13% Similarity=0.232 Sum_probs=91.7
Q ss_pred cceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCCCcceeeecCCCCCCCCCcccCCCCCCC
Q 042398 100 NLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHTPC 179 (422)
Q Consensus 100 nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~~~ 179 (422)
++++.||.|+|... +..+.|-.++..+++.+.++..+-+++|+..... ++++.+..+
T Consensus 2 ~v~~vlD~S~SM~~------------------~rl~~ak~a~~~l~~~l~~~~~~~li~F~~~~~~---~~~~~~~~~-- 58 (155)
T cd01466 2 DLVAVLDVSGSMAG------------------DKLQLVKHALRFVISSLGDADRLSIVTFSTSAKR---LSPLRRMTA-- 58 (155)
T ss_pred cEEEEEECCCCCCc------------------HHHHHHHHHHHHHHHhCCCcceEEEEEecCCccc---cCCCcccCH--
Confidence 68899999999851 1344455555555555555556999999986422 233332211
Q ss_pred CCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcC--CceEEEEEEeCCcccccCCCCCCCCchhHHHHHHHHHH
Q 042398 180 HGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSG--GQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVA 257 (422)
Q Consensus 180 ~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~--~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~ 257 (422)
.+-+ ...+.+..+...|-|+...-++.+.+..++.. +.-.++++||||..++ . .++..
T Consensus 59 ~~~~----~~~~~i~~~~~~g~T~~~~al~~a~~~~~~~~~~~~~~~iillTDG~~~~------------~----~~~~~ 118 (155)
T cd01466 59 KGKR----SAKRVVDGLQAGGGTNVVGGLKKALKVLGDRRQKNPVASIMLLSDGQDNH------------G----AVVLR 118 (155)
T ss_pred HHHH----HHHHHHHhccCCCCccHHHHHHHHHHHHhhcccCCCceEEEEEcCCCCCc------------c----hhhhc
Confidence 1122 22334445677888999999999998876532 2346889999998765 1 22344
Q ss_pred hcCCCeeEEEEecC-CCCccccccccC
Q 042398 258 ASSYPLSIVLVGVG-DGPWEDMQKFDD 283 (422)
Q Consensus 258 AS~~PlSIiiVGVG-~~~f~~m~~LD~ 283 (422)
+.+.++-|..||+| +.+...|++|=+
T Consensus 119 ~~~~~v~v~~igig~~~~~~~l~~iA~ 145 (155)
T cd01466 119 ADNAPIPIHTFGLGASHDPALLAFIAE 145 (155)
T ss_pred ccCCCceEEEEecCCCCCHHHHHHHHh
Confidence 55679999999999 456667776643
No 24
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=98.16 E-value=1.7e-05 Score=69.93 Aligned_cols=146 Identities=17% Similarity=0.264 Sum_probs=99.7
Q ss_pred cceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCCCcceeeecCCCCCCCCCcccCCCCCCC
Q 042398 100 NLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHTPC 179 (422)
Q Consensus 100 nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~~~ 179 (422)
++++.+|-|+|+.+. +...+..++|...+..++..+..| .|-+++|+... ...+++ .
T Consensus 1 dvv~v~D~SgSM~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~-~v~l~~f~~~~---~~~~~~------t 57 (172)
T PF13519_consen 1 DVVFVLDNSGSMNGY-------------DGNRTRIDQAKDALNELLANLPGD-RVGLVSFSDSS---RTLSPL------T 57 (172)
T ss_dssp EEEEEEE-SGGGGTT-------------TSSS-HHHHHHHHHHHHHHHHTTS-EEEEEEESTSC---EEEEEE------E
T ss_pred CEEEEEECCcccCCC-------------CCCCcHHHHHHHHHHHHHHHCCCC-EEEEEEecccc---cccccc------c
Confidence 578999999999642 113578899999999999988755 99999999853 112333 2
Q ss_pred CCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcCCceEEEEEEeCCcccccCCCCCCCCchhHHHHHHHHHHhc
Q 042398 180 HGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAAS 259 (422)
Q Consensus 180 ~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~AS 259 (422)
.+.+.+.++..+..+.....|.|++...|+.+.+........=-++++||||.-+. ...+++..+.
T Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~t~~~~al~~a~~~~~~~~~~~~~iv~iTDG~~~~--------------~~~~~~~~~~ 123 (172)
T PF13519_consen 58 SDKDELKNALNKLSPQGMPGGGTNLYDALQEAAKMLASSDNRRRAIVLITDGEDNS--------------SDIEAAKALK 123 (172)
T ss_dssp SSHHHHHHHHHTHHHHG--SSS--HHHHHHHHHHHHHC-SSEEEEEEEEES-TTHC--------------HHHHHHHHHH
T ss_pred ccHHHHHHHhhcccccccCccCCcHHHHHHHHHHHHHhCCCCceEEEEecCCCCCc--------------chhHHHHHHH
Confidence 46777777777666666678999999999999998876643445668889997654 3334666777
Q ss_pred CCCeeEEEEecCCCCcc--cccccc
Q 042398 260 SYPLSIVLVGVGDGPWE--DMQKFD 282 (422)
Q Consensus 260 ~~PlSIiiVGVG~~~f~--~m~~LD 282 (422)
...+.|.+||+|...-. .|+.+-
T Consensus 124 ~~~i~i~~v~~~~~~~~~~~l~~la 148 (172)
T PF13519_consen 124 QQGITIYTVGIGSDSDANEFLQRLA 148 (172)
T ss_dssp CTTEEEEEEEES-TT-EHHHHHHHH
T ss_pred HcCCeEEEEEECCCccHHHHHHHHH
Confidence 88999999999986543 444443
No 25
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.15 E-value=3.8e-07 Score=65.53 Aligned_cols=35 Identities=43% Similarity=1.113 Sum_probs=29.4
Q ss_pred ccccccccccc----ccccCCCccchhhhhcC----CCCCCcc
Q 042398 377 ACPICLTNAKD----LAFGCGHMTCRECGSRV----SNCPICR 411 (422)
Q Consensus 377 ~CpIC~~~~~~----v~l~CGH~fC~~Ci~~~----~~CP~CR 411 (422)
.|+||++.+.. +.++|||.||.+|+..| ..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 69999999854 45699999999999976 6899997
No 26
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=98.15 E-value=3.6e-05 Score=70.12 Aligned_cols=151 Identities=12% Similarity=0.149 Sum_probs=93.2
Q ss_pred cceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccC-CCCCcceeeecCCCCCCC--CCcccCCCC
Q 042398 100 NLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFD-EDNLIPCFGFGDATTHDQ--EVFSFHDDH 176 (422)
Q Consensus 100 nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD-~D~~ip~~GFGa~~~~~~--~vf~~~~~~ 176 (422)
.+.+.||.|+|... . +..+.|-.++..++.... .+-.+-+|+|+...+... .++...+-+
T Consensus 2 ~v~~llD~SgSM~~-------~----------~kl~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~~~~~~~~~~~~~~~~ 64 (174)
T cd01454 2 AVTLLLDLSGSMRS-------D----------RRIDVAKKAAVLLAEALEACGVPHAILGFTTDAGGRERVRWIKIKDFD 64 (174)
T ss_pred EEEEEEECCCCCCC-------C----------cHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCccceEEEEecCcc
Confidence 47889999999952 0 334444444444443333 245799999987632111 122110101
Q ss_pred CCCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcCCceEEEEEEeCCcccccCCCCCCCCchhHHHHHHHHH
Q 042398 177 TPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIV 256 (422)
Q Consensus 177 ~~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv 256 (422)
.. +..+.++.+..+...|-|++.+.|+.+.+...+....--++++||||..++.. ...+++. ..++.++++.
T Consensus 65 ---~~---~~~~~~~~l~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~iiliTDG~~~~~~-~~~~~~~-~~~~~~~~~~ 136 (174)
T cd01454 65 ---ES---LHERARKRLAALSPGGNTRDGAAIRHAAERLLARPEKRKILLVISDGEPNDLD-YYEGNVF-ATEDALRAVI 136 (174)
T ss_pred ---cc---cchhHHHHHHccCCCCCCcHHHHHHHHHHHHhcCCCcCcEEEEEeCCCcCccc-ccCcchh-HHHHHHHHHH
Confidence 00 11222344455666788999999999998877554445688999999988642 1122221 2345566688
Q ss_pred HhcCCCeeEEEEecCCCCc
Q 042398 257 AASSYPLSIVLVGVGDGPW 275 (422)
Q Consensus 257 ~AS~~PlSIiiVGVG~~~f 275 (422)
+|-+..+.+..||||+...
T Consensus 137 ~~~~~gi~v~~igig~~~~ 155 (174)
T cd01454 137 EARKLGIEVFGITIDRDAT 155 (174)
T ss_pred HHHhCCcEEEEEEecCccc
Confidence 8888899999999998753
No 27
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.13 E-value=1.1e-06 Score=90.91 Aligned_cols=49 Identities=27% Similarity=0.621 Sum_probs=41.3
Q ss_pred CCCCCCcCCccccccccccc-ccccCCCccchhhhhcC----CCCCCccccccC
Q 042398 368 GSTPVAETQACPICLTNAKD-LAFGCGHMTCRECGSRV----SNCPICRQRITN 416 (422)
Q Consensus 368 s~~~~~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~ 416 (422)
.-..+++.+.|+||++.+.+ ++++|||.||..|+..+ ..||+||..+..
T Consensus 19 ~l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 19 SLYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 34557888999999999999 56699999999999853 579999998754
No 28
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=7.6e-07 Score=89.86 Aligned_cols=49 Identities=37% Similarity=0.997 Sum_probs=42.0
Q ss_pred CcCCccccccccccc-ccccCCCcc-chhhhhcC----CCCCCccccccCccccC
Q 042398 373 AETQACPICLTNAKD-LAFGCGHMT-CRECGSRV----SNCPICRQRITNRLRLF 421 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~-v~l~CGH~f-C~~Ci~~~----~~CP~CR~~i~~~i~vy 421 (422)
+.-..|.||+...+| +++||.|.+ |..|.+.+ ..||+||++|...+.+|
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~ 342 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIY 342 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheec
Confidence 345789999999999 677999997 99999955 57999999999877765
No 29
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.09 E-value=1.9e-05 Score=74.13 Aligned_cols=160 Identities=16% Similarity=0.248 Sum_probs=95.7
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCCCcceeeecCCCCCC--CC-CcccCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHD--QE-VFSFHDD 175 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~--~~-vf~~~~~ 175 (422)
.++++.||.|+|+... -....+..+.|...+-.++..+..+..|-++.|+...... .. +++..+-
T Consensus 21 ~~vv~vlD~SgSM~~~------------~~~~~~rl~~ak~a~~~~l~~l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~ 88 (206)
T cd01456 21 PNVAIVLDNSGSMREV------------DGGGETRLDNAKAALDETANALPDGTRLGLWTFSGDGDNPLDVRVLVPKGCL 88 (206)
T ss_pred CcEEEEEeCCCCCcCC------------CCCcchHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCCcccccccccccc
Confidence 6899999999999631 0112456666777777777778777899999999854221 11 1211110
Q ss_pred CCCCCCHH-HHHHHHHhhCCccc-ccCCCChHHHHHHHHHHHHHcCCceEEEEEEeCCcccccCCCCCCCCchhHHHHHH
Q 042398 176 HTPCHGFE-EVLACYRNIVPNLR-LAGPTSYAPVVEAAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIK 253 (422)
Q Consensus 176 ~~~~~G~~-gvl~~Y~~~l~~v~-l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~ 253 (422)
-....+.. .-.+...+.+..++ ..|-|+...-|+.+.+... .+.-..+++||||.-++.. +..+..+
T Consensus 89 ~~~~~~~~~~~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~--~~~~~~iillTDG~~~~~~---------~~~~~~~ 157 (206)
T cd01456 89 TAPVNGFPSAQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD--PGRVNVVVLITDGEDTCGP---------DPCEVAR 157 (206)
T ss_pred ccccCCCCcccHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC--CCCcceEEEEcCCCccCCC---------CHHHHHH
Confidence 00111211 11233344556666 7889999999999987765 2333678899999876511 0123333
Q ss_pred HHHHh--cCCCeeEEEEecCCC-Cccccccc
Q 042398 254 SIVAA--SSYPLSIVLVGVGDG-PWEDMQKF 281 (422)
Q Consensus 254 aIv~A--S~~PlSIiiVGVG~~-~f~~m~~L 281 (422)
.+.+. ..-++.|-+||+|.+ +-..|+++
T Consensus 158 ~~~~~~~~~~~i~i~~igiG~~~~~~~l~~i 188 (206)
T cd01456 158 ELAKRRTPAPPIKVNVIDFGGDADRAELEAI 188 (206)
T ss_pred HHHHhcCCCCCceEEEEEecCcccHHHHHHH
Confidence 44333 124788999999975 34445444
No 30
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.06 E-value=9.7e-07 Score=61.97 Aligned_cols=33 Identities=45% Similarity=1.228 Sum_probs=26.8
Q ss_pred ccccccccccc--cccCCCccchhhhhcC----CCCCCc
Q 042398 378 CPICLTNAKDL--AFGCGHMTCRECGSRV----SNCPIC 410 (422)
Q Consensus 378 CpIC~~~~~~v--~l~CGH~fC~~Ci~~~----~~CP~C 410 (422)
|+||++.+.+. .++|||.||.+|+.++ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999994 4599999999999964 678887
No 31
>PHA02926 zinc finger-like protein; Provisional
Probab=98.02 E-value=1.7e-06 Score=82.63 Aligned_cols=45 Identities=38% Similarity=0.800 Sum_probs=35.1
Q ss_pred CcCCcccccccccc------c----ccccCCCccchhhhhcCC----------CCCCccccccCc
Q 042398 373 AETQACPICLTNAK------D----LAFGCGHMTCRECGSRVS----------NCPICRQRITNR 417 (422)
Q Consensus 373 ~e~~~CpIC~~~~~------~----v~l~CGH~fC~~Ci~~~~----------~CP~CR~~i~~~ 417 (422)
.++..|+||++... + ++.+|+|.||..|+..|. .||+||..+...
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 45689999998742 1 334999999999999762 399999998754
No 32
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.98 E-value=3.6e-06 Score=64.32 Aligned_cols=41 Identities=27% Similarity=0.397 Sum_probs=36.0
Q ss_pred Cccccccccccc-ccccCCCccchhhhhcC----CCCCCccccccC
Q 042398 376 QACPICLTNAKD-LAFGCGHMTCRECGSRV----SNCPICRQRITN 416 (422)
Q Consensus 376 ~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~ 416 (422)
+.|+||.+.+.+ ++++|||.||..|+..+ ..||+|+.+++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 679999999999 66699999999999965 579999998854
No 33
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.95 E-value=7.1e-05 Score=67.61 Aligned_cols=143 Identities=16% Similarity=0.268 Sum_probs=91.0
Q ss_pred cceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhcccccc---CCCCCcceeeecCCCCCCCCCcccCCCC
Q 042398 100 NLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPF---DEDNLIPCFGFGDATTHDQEVFSFHDDH 176 (422)
Q Consensus 100 nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~y---D~D~~ip~~GFGa~~~~~~~vf~~~~~~ 176 (422)
++++.+|-|.|.+. ..++++...+-.++..+ .++-.|-++.|+.... .+|+++.
T Consensus 2 Dv~~vlD~S~Sm~~------------------~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~---~~~~l~~-- 58 (164)
T cd01482 2 DIVFLVDGSWSIGR------------------SNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPR---TEFDLNA-- 58 (164)
T ss_pred CEEEEEeCCCCcCh------------------hhHHHHHHHHHHHHhheeeCCCceEEEEEEECCCee---EEEecCC--
Confidence 57899999988851 12344444444444444 3567899999998742 2344431
Q ss_pred CCCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHc-----CCceEEEEEEeCCcccccCCCCCCCCchhHHHH
Q 042398 177 TPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKS-----GGQYHVLVIIADGQVTRSVNTGDGELSSQEQKT 251 (422)
Q Consensus 177 ~~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~-----~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T 251 (422)
....+.++++..+. + ...|.|+...-|+.+.+...+. ...-.+++|||||.-+|. .++.
T Consensus 59 --~~~~~~l~~~l~~~-~--~~~g~T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~~~-----------~~~~ 122 (164)
T cd01482 59 --YTSKEDVLAAIKNL-P--YKGGNTRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQDD-----------VELP 122 (164)
T ss_pred --CCCHHHHHHHHHhC-c--CCCCCChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCCch-----------HHHH
Confidence 23455666654432 1 1478899999999888654221 234678899999987651 2233
Q ss_pred HHHHHHhcCCCeeEEEEecCCCCccccccccCC
Q 042398 252 IKSIVAASSYPLSIVLVGVGDGPWEDMQKFDDK 284 (422)
Q Consensus 252 ~~aIv~AS~~PlSIiiVGVG~~~f~~m~~LD~~ 284 (422)
.+. +-...+-|..||+|+.+...|+++-+.
T Consensus 123 a~~---lk~~gi~i~~ig~g~~~~~~L~~ia~~ 152 (164)
T cd01482 123 ARV---LRNLGVNVFAVGVKDADESELKMIASK 152 (164)
T ss_pred HHH---HHHCCCEEEEEecCcCCHHHHHHHhCC
Confidence 333 334688999999999887777777653
No 34
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=3.3e-06 Score=88.64 Aligned_cols=42 Identities=40% Similarity=0.921 Sum_probs=35.7
Q ss_pred CCccccccccccc-ccccCCCccchhhhhc---------CCCCCCccccccC
Q 042398 375 TQACPICLTNAKD-LAFGCGHMTCRECGSR---------VSNCPICRQRITN 416 (422)
Q Consensus 375 ~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~---------~~~CP~CR~~i~~ 416 (422)
...||||++...- +.+.|||.||..|+.+ +..||+||..|.-
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 5799999999887 4558999999999884 3689999998865
No 35
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.91 E-value=4.6e-06 Score=60.17 Aligned_cols=36 Identities=36% Similarity=1.057 Sum_probs=30.3
Q ss_pred ccccccccccc----ccccCCCccchhhhhcCC----CCCCccc
Q 042398 377 ACPICLTNAKD----LAFGCGHMTCRECGSRVS----NCPICRQ 412 (422)
Q Consensus 377 ~CpIC~~~~~~----v~l~CGH~fC~~Ci~~~~----~CP~CR~ 412 (422)
.|++|++.+.. .+++|||.||..|+..+. .||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 48999999832 456999999999999775 8999985
No 36
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=97.88 E-value=9.3e-05 Score=80.62 Aligned_cols=146 Identities=23% Similarity=0.228 Sum_probs=96.8
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCCCcceeeecCCCCCCCCCcccCCCCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHTP 178 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~~ 178 (422)
.++++.||.|+|+. | +..++|-.++..+|....++-.|-++.|+...... +... .
T Consensus 272 ~~vvfvlD~SgSM~--g----------------~~i~~ak~al~~~l~~L~~~d~~~ii~F~~~~~~~---~~~~----~ 326 (596)
T TIGR03788 272 RELVFVIDTSGSMA--G----------------ESIEQAKSALLLALDQLRPGDRFNIIQFDSDVTLL---FPVP----V 326 (596)
T ss_pred ceEEEEEECCCCCC--C----------------ccHHHHHHHHHHHHHhCCCCCEEEEEEECCcceEe---cccc----c
Confidence 57999999999984 1 23566777777777888777799999999874321 1110 0
Q ss_pred CCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHc-CCceEEEEEEeCCcccccCCCCCCCCchhHHHHHHHHHH
Q 042398 179 CHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKS-GGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVA 257 (422)
Q Consensus 179 ~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~-~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~ 257 (422)
..+ ++-++...+.+..++..|-|++.+.|+.+.+..... .+.--.+++||||++++ +.+.++++..
T Consensus 327 ~~~-~~~~~~a~~~i~~l~a~GgT~l~~aL~~a~~~~~~~~~~~~~~iillTDG~~~~------------~~~~~~~~~~ 393 (596)
T TIGR03788 327 PAT-AHNLARARQFVAGLQADGGTEMAGALSAALRDDGPESSGALRQVVFLTDGAVGN------------EDALFQLIRT 393 (596)
T ss_pred cCC-HHHHHHHHHHHhhCCCCCCccHHHHHHHHHHhhcccCCCceeEEEEEeCCCCCC------------HHHHHHHHHH
Confidence 011 222333344566677789999999999988763222 22234567899999876 5667777765
Q ss_pred hcCCCeeEEEEecCCC-CccccccccC
Q 042398 258 ASSYPLSIVLVGVGDG-PWEDMQKFDD 283 (422)
Q Consensus 258 AS~~PlSIiiVGVG~~-~f~~m~~LD~ 283 (422)
+. -..-|-.||||++ +...|+.|-.
T Consensus 394 ~~-~~~ri~tvGiG~~~n~~lL~~lA~ 419 (596)
T TIGR03788 394 KL-GDSRLFTVGIGSAPNSYFMRKAAQ 419 (596)
T ss_pred hc-CCceEEEEEeCCCcCHHHHHHHHH
Confidence 43 2456778999986 6666766643
No 37
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=97.85 E-value=0.00013 Score=65.71 Aligned_cols=141 Identities=18% Similarity=0.301 Sum_probs=89.3
Q ss_pred cceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccC---CCCCcceeeecCCCCCCCCCcccCCCC
Q 042398 100 NLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFD---EDNLIPCFGFGDATTHDQEVFSFHDDH 176 (422)
Q Consensus 100 nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD---~D~~ip~~GFGa~~~~~~~vf~~~~~~ 176 (422)
++++.||-|+|... ..++.+...+..++..|+ .+-.+-++-|+.... .+++++.
T Consensus 2 Dvv~vlD~SgSm~~------------------~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~~---~~~~~~~-- 58 (164)
T cd01472 2 DIVFLVDGSESIGL------------------SNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPR---TEFYLNT-- 58 (164)
T ss_pred CEEEEEeCCCCCCH------------------HHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCcee---EEEecCC--
Confidence 68899999999851 123444444444555554 344788999987642 2344431
Q ss_pred CCCCCHHHHHHHHHhhCCcccc-cCCCChHHHHHHHHHHHHHc-----CCceEEEEEEeCCcccccCCCCCCCCchhHHH
Q 042398 177 TPCHGFEEVLACYRNIVPNLRL-AGPTSYAPVVEAAMDIVEKS-----GGQYHVLVIIADGQVTRSVNTGDGELSSQEQK 250 (422)
Q Consensus 177 ~~~~G~~gvl~~Y~~~l~~v~l-~GPT~fapiI~~a~~~~~~~-----~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~ 250 (422)
....+.+.++ +.+++. .|.|+....+..|.+..... .+.-.++++||||.-++ .
T Consensus 59 --~~~~~~~~~~----l~~l~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~~--------------~ 118 (164)
T cd01472 59 --YRSKDDVLEA----VKNLRYIGGGTNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQD--------------D 118 (164)
T ss_pred --CCCHHHHHHH----HHhCcCCCCCchHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCCc--------------h
Confidence 1234444443 333443 78899999999999876541 23356788899997654 1
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCCccccccccC
Q 042398 251 TIKSIVAASSYPLSIVLVGVGDGPWEDMQKFDD 283 (422)
Q Consensus 251 T~~aIv~AS~~PlSIiiVGVG~~~f~~m~~LD~ 283 (422)
...+..+.....+.|..||+|+.+.+.|+.+=+
T Consensus 119 ~~~~~~~l~~~gv~i~~ig~g~~~~~~L~~ia~ 151 (164)
T cd01472 119 VEEPAVELKQAGIEVFAVGVKNADEEELKQIAS 151 (164)
T ss_pred HHHHHHHHHHCCCEEEEEECCcCCHHHHHHHHC
Confidence 222333344467899999999988888877654
No 38
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.84 E-value=0.00018 Score=65.32 Aligned_cols=140 Identities=17% Similarity=0.228 Sum_probs=84.1
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCCCcceeeecCCCCCCCCCcccCCCCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHTP 178 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~~ 178 (422)
.++++.||.|.|.... .+ . .++..+.|...+...+...+ +..+-++.|++... .++.+.
T Consensus 3 ~~vv~vlD~S~SM~~~---~~--------~-~~~r~~~a~~~~~~~~~~~~-~~~v~lv~f~~~~~---~~~~~~----- 61 (180)
T cd01467 3 RDIMIALDVSGSMLAQ---DF--------V-KPSRLEAAKEVLSDFIDRRE-NDRIGLVVFAGAAF---TQAPLT----- 61 (180)
T ss_pred ceEEEEEECCcccccc---cC--------C-CCCHHHHHHHHHHHHHHhCC-CCeEEEEEEcCCee---eccCCC-----
Confidence 5799999999999632 11 1 23444555555656666554 44799999987642 122222
Q ss_pred CCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcCCceEEEEEEeCCcccccCCCCCCCCchhHHHHHHHHHHh
Q 042398 179 CHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAA 258 (422)
Q Consensus 179 ~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~A 258 (422)
.+.+.+.+ .-+.+......|.|+...-|..+.+...+....-.++++||||.-++ +...+ .+.. ..+
T Consensus 62 -~~~~~~~~-~l~~l~~~~~~g~T~l~~al~~a~~~l~~~~~~~~~iiliTDG~~~~------g~~~~--~~~~---~~~ 128 (180)
T cd01467 62 -LDRESLKE-LLEDIKIGLAGQGTAIGDAIGLAIKRLKNSEAKERVIVLLTDGENNA------GEIDP--ATAA---ELA 128 (180)
T ss_pred -ccHHHHHH-HHHHhhhcccCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCC------CCCCH--HHHH---HHH
Confidence 12222222 22222233457889998888888887765544558889999997653 22222 2222 233
Q ss_pred cCCCeeEEEEecCC
Q 042398 259 SSYPLSIVLVGVGD 272 (422)
Q Consensus 259 S~~PlSIiiVGVG~ 272 (422)
....+-|..||+|.
T Consensus 129 ~~~gi~i~~i~ig~ 142 (180)
T cd01467 129 KNKGVRIYTIGVGK 142 (180)
T ss_pred HHCCCEEEEEEecC
Confidence 45677888888887
No 39
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=4.9e-06 Score=84.20 Aligned_cols=48 Identities=33% Similarity=0.865 Sum_probs=42.1
Q ss_pred CCcccccccccccc-cccCCCcc-chhhhhcCCCCCCccccccCccccCC
Q 042398 375 TQACPICLTNAKDL-AFGCGHMT-CRECGSRVSNCPICRQRITNRLRLFA 422 (422)
Q Consensus 375 ~~~CpIC~~~~~~v-~l~CGH~f-C~~Ci~~~~~CP~CR~~i~~~i~vy~ 422 (422)
...|.||.+.+++. .+||||++ |..|...+..||+||+.|...+++|+
T Consensus 305 p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y~ 354 (355)
T KOG1571|consen 305 PDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRYR 354 (355)
T ss_pred CCceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHhc
Confidence 35899999999995 45999996 77888889999999999999999885
No 40
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=5.8e-06 Score=90.32 Aligned_cols=50 Identities=32% Similarity=0.704 Sum_probs=41.0
Q ss_pred CCcCCcccccccccccccc-cCCCccchhhhhc-----CCCCCCccccccC--ccccC
Q 042398 372 VAETQACPICLTNAKDLAF-GCGHMTCRECGSR-----VSNCPICRQRITN--RLRLF 421 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~v~l-~CGH~fC~~Ci~~-----~~~CP~CR~~i~~--~i~vy 421 (422)
.++.+.|++|.+.++++++ .|||.||..|+.. .+.||.|...|.. +.+||
T Consensus 640 yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 640 YKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred HHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 3566899999999999555 9999999999994 4899999999864 34444
No 41
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=97.77 E-value=0.00021 Score=66.45 Aligned_cols=156 Identities=15% Similarity=0.227 Sum_probs=90.7
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCCCcceeeecCCCCCCCCCcccCCCCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHTP 178 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~~ 178 (422)
+|+.+.||-|.|.+. . ..+.-.+++..+...|..|..+-.+-++.|+.... .+|++....
T Consensus 1 ~di~~vlD~SgSM~~--------~-------~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~---~~~~~~~~~-- 60 (198)
T cd01470 1 LNIYIALDASDSIGE--------E-------DFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPK---EIVSIRDFN-- 60 (198)
T ss_pred CcEEEEEECCCCccH--------H-------HHHHHHHHHHHHHHHccccCCCceEEEEEecCCce---EEEecccCC--
Confidence 478999999999851 0 11223344444444444444455799999987632 234443211
Q ss_pred CCCHHHHHHHHHhhCCccc-ccCCCChHHHHHHHHHHHHHc--------CCceEEEEEEeCCcccccCCCCCCCCchhHH
Q 042398 179 CHGFEEVLACYRNIVPNLR-LAGPTSYAPVVEAAMDIVEKS--------GGQYHVLVIIADGQVTRSVNTGDGELSSQEQ 249 (422)
Q Consensus 179 ~~G~~gvl~~Y~~~l~~v~-l~GPT~fapiI~~a~~~~~~~--------~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~ 249 (422)
-...+.++++-...-.... ..|-|++...|+++.+..... ...-.++++||||+-++- .+| .
T Consensus 61 ~~~~~~~~~~l~~~~~~~~~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g-------~~~--~ 131 (198)
T cd01470 61 SNDADDVIKRLEDFNYDDHGDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMG-------GSP--L 131 (198)
T ss_pred CCCHHHHHHHHHhCCcccccCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCC-------CCh--h
Confidence 1234455443333222221 246799999998887654211 112478999999988751 122 3
Q ss_pred HHHHHHHHh----------cCCCeeEEEEecCCC-CccccccccC
Q 042398 250 KTIKSIVAA----------SSYPLSIVLVGVGDG-PWEDMQKFDD 283 (422)
Q Consensus 250 ~T~~aIv~A----------S~~PlSIiiVGVG~~-~f~~m~~LD~ 283 (422)
+..+.|.++ ....+.|..||||+. +.+.|+++=.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~v~i~~iGvG~~~~~~~L~~iA~ 176 (198)
T cd01470 132 PTVDKIKNLVYKNNKSDNPREDYLDVYVFGVGDDVNKEELNDLAS 176 (198)
T ss_pred HHHHHHHHHHhcccccccchhcceeEEEEecCcccCHHHHHHHhc
Confidence 344444443 334689999999974 7888887754
No 42
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.75 E-value=7.6e-06 Score=57.58 Aligned_cols=33 Identities=45% Similarity=1.229 Sum_probs=28.5
Q ss_pred cccccccccc-c-cccCCCccchhhhhcC------CCCCCc
Q 042398 378 CPICLTNAKD-L-AFGCGHMTCRECGSRV------SNCPIC 410 (422)
Q Consensus 378 CpIC~~~~~~-v-~l~CGH~fC~~Ci~~~------~~CP~C 410 (422)
|+||++.+.+ . +++|||.||..|+.++ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 8999999999 4 5699999999999854 569887
No 43
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.75 E-value=1.2e-05 Score=55.95 Aligned_cols=38 Identities=42% Similarity=1.182 Sum_probs=30.5
Q ss_pred ccccccccccc-ccc-cCCCccchhhhhcC-----CCCCCccccc
Q 042398 377 ACPICLTNAKD-LAF-GCGHMTCRECGSRV-----SNCPICRQRI 414 (422)
Q Consensus 377 ~CpIC~~~~~~-v~l-~CGH~fC~~Ci~~~-----~~CP~CR~~i 414 (422)
.|+||++.+.+ +.+ +|||.||..|+..+ ..||.||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 49999999855 444 69999999999843 5799998753
No 44
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=97.75 E-value=0.00043 Score=61.89 Aligned_cols=142 Identities=21% Similarity=0.327 Sum_probs=88.6
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCC---CCCcceeeecCCCCCCCCCcccCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDE---DNLIPCFGFGDATTHDQEVFSFHDD 175 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~---D~~ip~~GFGa~~~~~~~vf~~~~~ 175 (422)
+++++.+|-|.|... .|+++...+..++..+.. .-.+-+++|+.... ..-.|++...
T Consensus 1 ldv~~llD~S~Sm~~-------------------~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~-~~~~~~l~~~ 60 (163)
T cd01476 1 LDLLFVLDSSGSVRG-------------------KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGR-QRVRFNLPKH 60 (163)
T ss_pred CCEEEEEeCCcchhh-------------------hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCc-eEEEecCCCC
Confidence 468899999988741 144555555555666654 57799999988521 1123444321
Q ss_pred CCCCCCHHHHHHHHHhhCCccc-ccCCCChHHHHHHHHHHHHHc----CCceEEEEEEeCCcccccCCCCCCCCchhHHH
Q 042398 176 HTPCHGFEEVLACYRNIVPNLR-LAGPTSYAPVVEAAMDIVEKS----GGQYHVLVIIADGQVTRSVNTGDGELSSQEQK 250 (422)
Q Consensus 176 ~~~~~G~~gvl~~Y~~~l~~v~-l~GPT~fapiI~~a~~~~~~~----~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~ 250 (422)
...+.++++-. .++ ..|.|+....|+.+.+...+. .+...+++++|||..++. ..+
T Consensus 61 ----~~~~~l~~~i~----~l~~~gg~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~-----------~~~ 121 (163)
T cd01476 61 ----NDGEELLEKVD----NLRFIGGTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHDD-----------PEK 121 (163)
T ss_pred ----CCHHHHHHHHH----hCccCCCCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCCc-----------hHH
Confidence 23344444333 233 467899999999999887521 123488999999987651 233
Q ss_pred HHHHHHHhcCCCeeEEEEecCCC---Cccccccc
Q 042398 251 TIKSIVAASSYPLSIVLVGVGDG---PWEDMQKF 281 (422)
Q Consensus 251 T~~aIv~AS~~PlSIiiVGVG~~---~f~~m~~L 281 (422)
..+.+.+ ..-+.|+.||+|+. +...|+.+
T Consensus 122 ~~~~l~~--~~~v~v~~vg~g~~~~~~~~~L~~i 153 (163)
T cd01476 122 QARILRA--VPNIETFAVGTGDPGTVDTEELHSI 153 (163)
T ss_pred HHHHHhh--cCCCEEEEEECCCccccCHHHHHHH
Confidence 4555554 46688999999986 34444444
No 45
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=97.73 E-value=0.00077 Score=63.16 Aligned_cols=170 Identities=15% Similarity=0.216 Sum_probs=106.0
Q ss_pred cceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHH-HHHHHHhccccccCC---CCCcceeeecCCCCCCCCCcccCCC
Q 042398 100 NLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYE-KAITIIGKTLAPFDE---DNLIPCFGFGDATTHDQEVFSFHDD 175 (422)
Q Consensus 100 nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~-~AI~~ig~il~~yD~---D~~ip~~GFGa~~~~~~~vf~~~~~ 175 (422)
.+++.+|=|.|-+. ..++ .++..+-.+++.|+- +-.+-+.=|+.... ..++|+.+
T Consensus 2 Di~fllD~S~Si~~------------------~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~~---~~~~~~~~ 60 (192)
T cd01473 2 DLTLILDESASIGY------------------SNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEKNR---DVVPFSDE 60 (192)
T ss_pred cEEEEEeCCCcccH------------------HHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCCce---eEEecCcc
Confidence 47888998888751 1233 244455556666653 45788888887541 23555432
Q ss_pred CCCCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcCC----ceEEEEEEeCCcccccCCCCCCCCchhHHHH
Q 042398 176 HTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSGG----QYHVLVIIADGQVTRSVNTGDGELSSQEQKT 251 (422)
Q Consensus 176 ~~~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~~----~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T 251 (422)
. -..-++++++=++.-+.....|-|+....|+.+.+......+ .--|+++||||.-++.. ....
T Consensus 61 ~--~~~~~~l~~~i~~l~~~~~~~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~~----------~~~~ 128 (192)
T cd01473 61 E--RYDKNELLKKINDLKNSYRSGGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSAS----------KKEL 128 (192)
T ss_pred c--ccCHHHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCcc----------hhhH
Confidence 1 123456666555444334446889999999998877643221 36899999999988621 2345
Q ss_pred HHHHHHhcCCCeeEEEEecCCCCccccccccCCC-CCcccccceecchhhhh
Q 042398 252 IKSIVAASSYPLSIVLVGVGDGPWEDMQKFDDKI-PAREFDNFQFVNFTAIM 302 (422)
Q Consensus 252 ~~aIv~AS~~PlSIiiVGVG~~~f~~m~~LD~~~-~~r~rDnvqFV~f~~~~ 302 (422)
.++...+-+..+-|..||||..+-..++.+=+.- ......+|=..+|+++.
T Consensus 129 ~~~a~~lk~~gV~i~~vGiG~~~~~el~~ia~~~~~~~~~~~~~~~~f~~l~ 180 (192)
T cd01473 129 QDISLLYKEENVKLLVVGVGAASENKLKLLAGCDINNDNCPNVIKTEWNNLN 180 (192)
T ss_pred HHHHHHHHHCCCEEEEEEeccccHHHHHHhcCCCCCCCCCCeEEecchhhHH
Confidence 6777777888999999999998766666665431 11112344445566553
No 46
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.72 E-value=5.6e-06 Score=83.01 Aligned_cols=45 Identities=24% Similarity=0.640 Sum_probs=38.9
Q ss_pred CCcCCccccccccccc-ccccCCCccchhhhhcC----CCCCCccccccC
Q 042398 372 VAETQACPICLTNAKD-LAFGCGHMTCRECGSRV----SNCPICRQRITN 416 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~ 416 (422)
+.+-+.|.||++++.. +.+||+|.||.-||... ..||.|+.+++.
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccch
Confidence 5667899999999999 55699999999999964 689999998864
No 47
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=1.3e-05 Score=75.99 Aligned_cols=42 Identities=40% Similarity=1.020 Sum_probs=36.6
Q ss_pred CCCcCCccccccccccc-ccccCCCccchhhhhcC----CCCCCccc
Q 042398 371 PVAETQACPICLTNAKD-LAFGCGHMTCRECGSRV----SNCPICRQ 412 (422)
Q Consensus 371 ~~~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~----~~CP~CR~ 412 (422)
...+...|+||++.+.+ .+++|||.||..|+..+ ..||.||.
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 36778999999999999 56799999999999964 58999993
No 48
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=1.6e-05 Score=77.56 Aligned_cols=43 Identities=28% Similarity=0.696 Sum_probs=36.8
Q ss_pred CcCCccccccccccc-ccccCCCccchhhhhc-C-----CCCCCcccccc
Q 042398 373 AETQACPICLTNAKD-LAFGCGHMTCRECGSR-V-----SNCPICRQRIT 415 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~-~-----~~CP~CR~~i~ 415 (422)
..+..|.||++.... ..++|||.||..|+.. | ..||+||+...
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 457899999999998 5679999999999986 4 45999999764
No 49
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.62 E-value=1.7e-05 Score=61.95 Aligned_cols=44 Identities=32% Similarity=0.843 Sum_probs=25.8
Q ss_pred CCcCCccccccccccc-ccc-cCCCccchhhhhcC--CCCCCcccccc
Q 042398 372 VAETQACPICLTNAKD-LAF-GCGHMTCRECGSRV--SNCPICRQRIT 415 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~-v~l-~CGH~fC~~Ci~~~--~~CP~CR~~i~ 415 (422)
+++.+.|++|.+.++. +.+ .|.|.||+.|+... ..||+|+.+-.
T Consensus 4 le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~~CPvC~~Paw 51 (65)
T PF14835_consen 4 LEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGSECPVCHTPAW 51 (65)
T ss_dssp HHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTTB-SSS--B-S
T ss_pred HHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCCCCCCcCChHH
Confidence 3456899999999999 444 99999999999965 67999999864
No 50
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.62 E-value=0.00044 Score=63.98 Aligned_cols=148 Identities=16% Similarity=0.233 Sum_probs=93.3
Q ss_pred cccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhcccccc---------CCCCCcceeeecCCCCCCCC
Q 042398 98 SSNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPF---------DEDNLIPCFGFGDATTHDQE 168 (422)
Q Consensus 98 ~~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~y---------D~D~~ip~~GFGa~~~~~~~ 168 (422)
.+++++.||-|.|.+. ..++.+...+-.++..+ ..+-.+-++.|+.... .
T Consensus 2 ~~dvv~vlD~S~Sm~~------------------~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~---~ 60 (186)
T cd01480 2 PVDITFVLDSSESVGL------------------QNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQE---V 60 (186)
T ss_pred CeeEEEEEeCCCccch------------------hhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCce---e
Confidence 3789999999999851 12344444444444444 2235788999987632 2
Q ss_pred CcccCCCCCCCCCHHHHHHHHHhhCCccc-ccCCCChHHHHHHHHHHHHH--cCCceEEEEEEeCCcccccCCCCCCCCc
Q 042398 169 VFSFHDDHTPCHGFEEVLACYRNIVPNLR-LAGPTSYAPVVEAAMDIVEK--SGGQYHVLVIIADGQVTRSVNTGDGELS 245 (422)
Q Consensus 169 vf~~~~~~~~~~G~~gvl~~Y~~~l~~v~-l~GPT~fapiI~~a~~~~~~--~~~~Y~VLlIiTDG~i~d~~~~~~~~~~ 245 (422)
+|++..+ -...+.+.+ .+..++ ..|.|+...-|+++.+.... ..+.-.++++||||.-++..
T Consensus 61 ~~~l~~~---~~~~~~l~~----~i~~l~~~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~-------- 125 (186)
T cd01480 61 EAGFLRD---IRNYTSLKE----AVDNLEYIGGGTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSP-------- 125 (186)
T ss_pred eEecccc---cCCHHHHHH----HHHhCccCCCCccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCc--------
Confidence 3555421 123444433 344444 47899999999999987764 12345788999999864311
Q ss_pred hhHHHHHHHHHHhcCCCeeEEEEecCCCCccccccccC
Q 042398 246 SQEQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFDD 283 (422)
Q Consensus 246 ~~~~~T~~aIv~AS~~PlSIiiVGVG~~~f~~m~~LD~ 283 (422)
.....+++.++.+..+.|..||||..+-..|+++=+
T Consensus 126 --~~~~~~~~~~~~~~gi~i~~vgig~~~~~~L~~IA~ 161 (186)
T cd01480 126 --DGGIEKAVNEADHLGIKIFFVAVGSQNEEPLSRIAC 161 (186)
T ss_pred --chhHHHHHHHHHHCCCEEEEEecCccchHHHHHHHc
Confidence 123345556666889999999999966555555543
No 51
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=97.57 E-value=0.00038 Score=64.16 Aligned_cols=146 Identities=15% Similarity=0.216 Sum_probs=88.5
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccC-CCCCcceeeecCCCCCCCCCcccCCCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFD-EDNLIPCFGFGDATTHDQEVFSFHDDHT 177 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD-~D~~ip~~GFGa~~~~~~~vf~~~~~~~ 177 (422)
+++++.||-|+|.+.. +.+++..+-+++..|+ .+-.+-++.|+... ..+|+|+...
T Consensus 5 ~Dvv~llD~SgSm~~~-------------------~~~~~~~~~~l~~~~~~~~~rvglv~Fs~~~---~~~~~l~~~~- 61 (185)
T cd01474 5 FDLYFVLDKSGSVAAN-------------------WIEIYDFVEQLVDRFNSPGLRFSFITFSTRA---TKILPLTDDS- 61 (185)
T ss_pred eeEEEEEeCcCchhhh-------------------HHHHHHHHHHHHHHcCCCCcEEEEEEecCCc---eEEEeccccH-
Confidence 6899999999998520 1111222222333332 34689999998753 2356664322
Q ss_pred CCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHH--cCCce--EEEEEEeCCcccccCCCCCCCCchhHHHHHH
Q 042398 178 PCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEK--SGGQY--HVLVIIADGQVTRSVNTGDGELSSQEQKTIK 253 (422)
Q Consensus 178 ~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~--~~~~Y--~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~ 253 (422)
+.+.++.. .++.+...|-|+...-|+.|.+.... .++.. .++++||||.-++.. ...+.+
T Consensus 62 -----~~~~~~l~-~l~~~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~~----------~~~~~~ 125 (185)
T cd01474 62 -----SAIIKGLE-VLKKVTPSGQTYIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNG----------HKYPEH 125 (185)
T ss_pred -----HHHHHHHH-HHhccCCCCCCcHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCCC----------CcchHH
Confidence 12222221 24455567899999999999876532 22222 788999999985410 112333
Q ss_pred HHHHhcCCCeeEEEEecCCCCccccccccC
Q 042398 254 SIVAASSYPLSIVLVGVGDGPWEDMQKFDD 283 (422)
Q Consensus 254 aIv~AS~~PlSIiiVGVG~~~f~~m~~LD~ 283 (422)
+...+-+..+-|..||||+.+...|+.+=+
T Consensus 126 ~a~~l~~~gv~i~~vgv~~~~~~~L~~iA~ 155 (185)
T cd01474 126 EAKLSRKLGAIVYCVGVTDFLKSQLINIAD 155 (185)
T ss_pred HHHHHHHcCCEEEEEeechhhHHHHHHHhC
Confidence 344444567889999998888777877754
No 52
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.56 E-value=2.1e-05 Score=77.64 Aligned_cols=45 Identities=29% Similarity=0.635 Sum_probs=38.2
Q ss_pred CCcCCccccccccccc-ccccCCCccchhhhhcC----CCCCCccccccC
Q 042398 372 VAETQACPICLTNAKD-LAFGCGHMTCRECGSRV----SNCPICRQRITN 416 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~ 416 (422)
+...+.|.||-+.++. +..+|||.||.-||.+. ..||+||.....
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred chhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 4556899999999998 56699999999999964 689999998643
No 53
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.56 E-value=0.0016 Score=57.74 Aligned_cols=133 Identities=16% Similarity=0.175 Sum_probs=78.8
Q ss_pred cceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCCCcceeeecCCCCCCCCCcccCCCCCCC
Q 042398 100 NLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHTPC 179 (422)
Q Consensus 100 nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~~~ 179 (422)
.+.+.||.|+|...+ ..-....++..++..+.. .+..+-++.|+... ....+. .-
T Consensus 2 ~v~illD~SgSM~~~---------------k~~~a~~~~~~l~~~~~~--~~~~v~li~F~~~~----~~~~~~----~~ 56 (152)
T cd01462 2 PVILLVDQSGSMYGA---------------PEEVAKAVALALLRIALA--ENRDTYLILFDSEF----QTKIVD----KT 56 (152)
T ss_pred CEEEEEECCCCCCCC---------------HHHHHHHHHHHHHHHHHH--cCCcEEEEEeCCCc----eEEecC----Cc
Confidence 478999999999520 011234444555555544 23468999998871 111111 11
Q ss_pred CCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcCCceEEEEEEeCCc-ccccCCCCCCCCchhHHHHHHHHHHh
Q 042398 180 HGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSGGQYHVLVIIADGQ-VTRSVNTGDGELSSQEQKTIKSIVAA 258 (422)
Q Consensus 180 ~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~-i~d~~~~~~~~~~~~~~~T~~aIv~A 258 (422)
..+..+++. +..+...|.|++++.+..+.+..++....=.+++|||||. -.+ ..+..++...+
T Consensus 57 ~~~~~~~~~----l~~~~~~ggT~l~~al~~a~~~l~~~~~~~~~ivliTDG~~~~~------------~~~~~~~~~~~ 120 (152)
T cd01462 57 DDLEEPVEF----LSGVQLGGGTDINKALRYALELIERRDPRKADIVLITDGYEGGV------------SDELLREVELK 120 (152)
T ss_pred ccHHHHHHH----HhcCCCCCCcCHHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC------------CHHHHHHHHHH
Confidence 345555543 3345678999999999999988776433336789999995 222 12332223333
Q ss_pred cCCCeeEEEEecCCC
Q 042398 259 SSYPLSIVLVGVGDG 273 (422)
Q Consensus 259 S~~PlSIiiVGVG~~ 273 (422)
.....=|-.||||+.
T Consensus 121 ~~~~~~v~~~~~g~~ 135 (152)
T cd01462 121 RSRVARFVALALGDH 135 (152)
T ss_pred HhcCcEEEEEEecCC
Confidence 344566777777763
No 54
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.55 E-value=1.9e-05 Score=57.09 Aligned_cols=26 Identities=35% Similarity=1.097 Sum_probs=16.5
Q ss_pred cccccccccc-----ccccCCCccchhhhhcC
Q 042398 378 CPICLTNAKD-----LAFGCGHMTCRECGSRV 404 (422)
Q Consensus 378 CpIC~~~~~~-----v~l~CGH~fC~~Ci~~~ 404 (422)
||||.+ +.+ ++|+|||+||.+|+.++
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHH
Confidence 899999 544 56799999999999965
No 55
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=97.54 E-value=0.00039 Score=61.81 Aligned_cols=143 Identities=15% Similarity=0.253 Sum_probs=88.4
Q ss_pred cceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCCCcceeeecCCCCCCCCCcccCCCCCCC
Q 042398 100 NLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHTPC 179 (422)
Q Consensus 100 nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~~~ 179 (422)
++++-||.+.|+.. + . ..-..|++.+.+-|. +...|-++.||......... +-+- .-
T Consensus 2 ~vvilvD~S~Sm~g-----------~----~-~~~k~al~~~l~~L~---~~d~fnii~f~~~~~~~~~~--~~~~--~~ 58 (155)
T PF13768_consen 2 DVVILVDTSGSMSG-----------E----K-ELVKDALRAILRSLP---PGDRFNIIAFGSSVRPLFPG--LVPA--TE 58 (155)
T ss_pred eEEEEEeCCCCCCC-----------c----H-HHHHHHHHHHHHhCC---CCCEEEEEEeCCEeeEcchh--HHHH--hH
Confidence 58999999999952 1 1 334455555555544 45589999999863211110 0000 01
Q ss_pred CCHHHHHHHHHhhCCcccc-cCCCChHHHHHHHHHHHHHcCCceEEEEEEeCCcccccCCCCCCCCchhHHHHHHHHHHh
Q 042398 180 HGFEEVLACYRNIVPNLRL-AGPTSYAPVVEAAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAA 258 (422)
Q Consensus 180 ~G~~gvl~~Y~~~l~~v~l-~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~A 258 (422)
.+.+.+ .+-+..+.. .|.|+..+.++.|.+.... .+.-..+++||||..++. .+++.+.+..+
T Consensus 59 ~~~~~a----~~~I~~~~~~~G~t~l~~aL~~a~~~~~~-~~~~~~IilltDG~~~~~-----------~~~i~~~v~~~ 122 (155)
T PF13768_consen 59 ENRQEA----LQWIKSLEANSGGTDLLAALRAALALLQR-PGCVRAIILLTDGQPVSG-----------EEEILDLVRRA 122 (155)
T ss_pred HHHHHH----HHHHHHhcccCCCccHHHHHHHHHHhccc-CCCccEEEEEEeccCCCC-----------HHHHHHHHHhc
Confidence 223333 333444666 8999999999988865422 234566688899997431 46777766654
Q ss_pred cCCCeeEEEEecCC-CCcccccccc
Q 042398 259 SSYPLSIVLVGVGD-GPWEDMQKFD 282 (422)
Q Consensus 259 S~~PlSIiiVGVG~-~~f~~m~~LD 282 (422)
. -.+-|..+|+|. .+...|++|=
T Consensus 123 ~-~~~~i~~~~~g~~~~~~~L~~LA 146 (155)
T PF13768_consen 123 R-GHIRIFTFGIGSDADADFLRELA 146 (155)
T ss_pred C-CCceEEEEEECChhHHHHHHHHH
Confidence 3 557788899998 5666666553
No 56
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=97.54 E-value=0.00092 Score=72.24 Aligned_cols=142 Identities=13% Similarity=0.213 Sum_probs=96.3
Q ss_pred cccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCC-CCcc--eeeecCCCCCCCCCcccCC
Q 042398 98 SSNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDED-NLIP--CFGFGDATTHDQEVFSFHD 174 (422)
Q Consensus 98 ~~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D-~~ip--~~GFGa~~~~~~~vf~~~~ 174 (422)
.+++++.||-|+|.+. .|-.++|...+..++..++.. ..+- +..|+... ..+|++..
T Consensus 42 ~lDIvFLLD~SgSMg~-----------------~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~---r~vfpL~s 101 (576)
T PTZ00441 42 EVDLYLLVDGSGSIGY-----------------HNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNT---TELIRLGS 101 (576)
T ss_pred CceEEEEEeCCCccCC-----------------ccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCc---eEEEecCC
Confidence 4789999999999862 144567777777777777532 1233 35776653 23455533
Q ss_pred CCCCCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcC---CceEEEEEEeCCcccccCCCCCCCCchhHHHH
Q 042398 175 DHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSG---GQYHVLVIIADGQVTRSVNTGDGELSSQEQKT 251 (422)
Q Consensus 175 ~~~~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~---~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T 251 (422)
.. -...+.++.+-.+....+..+|-|++...+..+.+...+.+ ..--++++||||.-++ ..++
T Consensus 102 ~~--s~Dk~~aL~~I~sL~~~~~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns------------~~dv 167 (576)
T PTZ00441 102 GA--SKDKEQALIIVKSLRKTYLPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNS------------KYRA 167 (576)
T ss_pred Cc--cccHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCCC------------cccH
Confidence 21 13445677766666666777899999999999887765431 2236889999998654 2345
Q ss_pred HHHHHHhcCCCeeEEEEecCCC
Q 042398 252 IKSIVAASSYPLSIVLVGVGDG 273 (422)
Q Consensus 252 ~~aIv~AS~~PlSIiiVGVG~~ 273 (422)
++++.......+-|..||||.+
T Consensus 168 leaAq~LR~~GVeI~vIGVG~g 189 (576)
T PTZ00441 168 LEESRKLKDRNVKLAVIGIGQG 189 (576)
T ss_pred HHHHHHHHHCCCEEEEEEeCCC
Confidence 5666666677899999999974
No 57
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=97.50 E-value=0.00042 Score=61.76 Aligned_cols=148 Identities=14% Similarity=0.212 Sum_probs=88.9
Q ss_pred cceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCCCcceeeecCCCCCCCCCcccCCCCCCC
Q 042398 100 NLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHTPC 179 (422)
Q Consensus 100 nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~~~ 179 (422)
++++.||-|.|.+.. ..+...+++..+..-+...+..-.+-+.-||.... .+|+|+-.
T Consensus 1 DivflvD~S~sm~~~---------------~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~---~~~~~~~~---- 58 (178)
T PF00092_consen 1 DIVFLVDTSGSMSGD---------------NFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSAR---VLFSLTDY---- 58 (178)
T ss_dssp EEEEEEE-STTSCHH---------------HHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEE---EEEETTSH----
T ss_pred CEEEEEeCCCCCchH---------------HHHHHHHHHHHHHHhhhccccccccceeeeecccc---cccccccc----
Confidence 478999999998520 12334444444444444667777889999998753 34555321
Q ss_pred CCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHc-----CCceEEEEEEeCCcccccCCCCCCCCchhHHHHHHH
Q 042398 180 HGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKS-----GGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKS 254 (422)
Q Consensus 180 ~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~-----~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~a 254 (422)
...+.+++.- ........|.|+++..|++|.+..... .....++++||||..++.. ........
T Consensus 59 ~~~~~~~~~i--~~~~~~~~g~t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~---------~~~~~~~~ 127 (178)
T PF00092_consen 59 QSKNDLLNAI--NDSIPSSGGGTNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSD---------SPSEEAAN 127 (178)
T ss_dssp SSHHHHHHHH--HTTGGCCBSSB-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHS---------GHHHHHHH
T ss_pred cccccccccc--cccccccchhhhHHHHHhhhhhcccccccccccccccceEEEEeecccCCc---------chHHHHHH
Confidence 2344554432 234455779999999999999886543 4578999999999998831 12222333
Q ss_pred HHHhcCCCeeEEEEecCCCCcccccccc
Q 042398 255 IVAASSYPLSIVLVGVGDGPWEDMQKFD 282 (422)
Q Consensus 255 Iv~AS~~PlSIiiVGVG~~~f~~m~~LD 282 (422)
+... .-+.++.||+++.+-..|+.|-
T Consensus 128 ~~~~--~~i~~~~ig~~~~~~~~l~~la 153 (178)
T PF00092_consen 128 LKKS--NGIKVIAIGIDNADNEELRELA 153 (178)
T ss_dssp HHHH--CTEEEEEEEESCCHHHHHHHHS
T ss_pred HHHh--cCcEEEEEecCcCCHHHHHHHh
Confidence 3322 4555555555445566666554
No 58
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.45 E-value=6.9e-05 Score=50.26 Aligned_cols=33 Identities=52% Similarity=1.301 Sum_probs=27.5
Q ss_pred cccccccccc-ccccCCCccchhhhhcC-----CCCCCc
Q 042398 378 CPICLTNAKD-LAFGCGHMTCRECGSRV-----SNCPIC 410 (422)
Q Consensus 378 CpIC~~~~~~-v~l~CGH~fC~~Ci~~~-----~~CP~C 410 (422)
|+||++...+ +.++|||.||..|+..+ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 8899999777 56699999999999854 568887
No 59
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=1.2e-05 Score=81.06 Aligned_cols=47 Identities=30% Similarity=0.754 Sum_probs=39.5
Q ss_pred CCcCCccccccccccc-ccc-cCCCccchhhhhcC-----CCCCCccccccCcc
Q 042398 372 VAETQACPICLTNAKD-LAF-GCGHMTCRECGSRV-----SNCPICRQRITNRL 418 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~-v~l-~CGH~fC~~Ci~~~-----~~CP~CR~~i~~~i 418 (422)
+..+..|+||+++++. ++. .|+|.||.+|+... ..||.||+.+..+.
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKR 93 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccc
Confidence 5567899999999999 544 99999999999953 68999999886543
No 60
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=97.40 E-value=0.001 Score=63.32 Aligned_cols=142 Identities=16% Similarity=0.268 Sum_probs=90.8
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCC---CCCcceeeecCCCCCCCCCcccCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDE---DNLIPCFGFGDATTHDQEVFSFHDD 175 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~---D~~ip~~GFGa~~~~~~~vf~~~~~ 175 (422)
+++++.||-|.|.+ ...++++...+..++..++. .-.+-++.|+.... .+|+|+..
T Consensus 3 ~DlvfllD~S~Sm~------------------~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~---~~~~l~~~ 61 (224)
T cd01475 3 TDLVFLIDSSRSVR------------------PENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVK---QEFPLGRF 61 (224)
T ss_pred ccEEEEEeCCCCCC------------------HHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCcee---EEeccccc
Confidence 57899999998874 13477888888888888764 34799999998742 34666431
Q ss_pred CCCCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHH-H-c---CCc---eEEEEEEeCCcccccCCCCCCCCchh
Q 042398 176 HTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVE-K-S---GGQ---YHVLVIIADGQVTRSVNTGDGELSSQ 247 (422)
Q Consensus 176 ~~~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~-~-~---~~~---Y~VLlIiTDG~i~d~~~~~~~~~~~~ 247 (422)
...+++.++-.. ++. +.|.|+-.-.|+.+.+.+- + . .+. -.|+++||||.-.|.
T Consensus 62 ----~~~~~l~~~i~~-i~~--~~~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~~----------- 123 (224)
T cd01475 62 ----KSKADLKRAVRR-MEY--LETGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQDD----------- 123 (224)
T ss_pred ----CCHHHHHHHHHh-CcC--CCCCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCccc-----------
Confidence 223455554332 222 3566777767777765421 1 1 111 478999999987651
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCcccccccc
Q 042398 248 EQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFD 282 (422)
Q Consensus 248 ~~~T~~aIv~AS~~PlSIiiVGVG~~~f~~m~~LD 282 (422)
..+ ++.++-..-+.|..||||+.+...|+++=
T Consensus 124 ~~~---~a~~lk~~gv~i~~VgvG~~~~~~L~~ia 155 (224)
T cd01475 124 VSE---VAAKARALGIEMFAVGVGRADEEELREIA 155 (224)
T ss_pred HHH---HHHHHHHCCcEEEEEeCCcCCHHHHHHHh
Confidence 223 33344456789999999997766666554
No 61
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=6.3e-05 Score=74.70 Aligned_cols=40 Identities=30% Similarity=0.752 Sum_probs=35.3
Q ss_pred Cccccccccccc----ccccCCCccchhhhhcC-----CCCCCcccccc
Q 042398 376 QACPICLTNAKD----LAFGCGHMTCRECGSRV-----SNCPICRQRIT 415 (422)
Q Consensus 376 ~~CpIC~~~~~~----v~l~CGH~fC~~Ci~~~-----~~CP~CR~~i~ 415 (422)
-.|.||+..+.. +++||.|.|+..|+.+| ..||+||.++.
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 689999998865 57899999999999987 57999999875
No 62
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=97.33 E-value=0.0019 Score=60.03 Aligned_cols=139 Identities=12% Similarity=0.189 Sum_probs=89.4
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCC---CCCcceeeecCCCCCCCCCcccCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDE---DNLIPCFGFGDATTHDQEVFSFHDD 175 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~---D~~ip~~GFGa~~~~~~~vf~~~~~ 175 (422)
-+++++||-|.|+... +-.||-.+.|-..+...+..+.+ ...+-++.|++...+. +.+++.|
T Consensus 4 r~ivi~lD~S~SM~a~-------------D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~--~~PlT~D 68 (183)
T cd01453 4 RHLIIVIDCSRSMEEQ-------------DLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEK--LTDLTGN 68 (183)
T ss_pred eEEEEEEECcHHHhcC-------------CCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEE--EECCCCC
Confidence 4799999999998531 11479999999999999987733 3578888896443221 2333322
Q ss_pred CCCCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcCC--ceEEEEEEeCCcccccCCCCCCCCchhHHHHHH
Q 042398 176 HTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSGG--QYHVLVIIADGQVTRSVNTGDGELSSQEQKTIK 253 (422)
Q Consensus 176 ~~~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~~--~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~ 253 (422)
.+.++..-+.. +...|-|++...|+.|.+..++... .=.|+|++|||.-.| ..+..+
T Consensus 69 ------~~~~~~~L~~~---~~~~G~t~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~------------~~~~~~ 127 (183)
T cd01453 69 ------PRKHIQALKTA---RECSGEPSLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCD------------PGNIYE 127 (183)
T ss_pred ------HHHHHHHhhcc---cCCCCchhHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCC------------hhhHHH
Confidence 23333333222 2446779999999999888765322 234788899987654 112223
Q ss_pred HHHHhcCCCeeEEEEecCCC
Q 042398 254 SIVAASSYPLSIVLVGVGDG 273 (422)
Q Consensus 254 aIv~AS~~PlSIiiVGVG~~ 273 (422)
++..+.+..+-|-+||||.+
T Consensus 128 ~~~~l~~~~I~v~~IgiG~~ 147 (183)
T cd01453 128 TIDKLKKENIRVSVIGLSAE 147 (183)
T ss_pred HHHHHHHcCcEEEEEEechH
Confidence 44455556788888999853
No 63
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=97.29 E-value=0.0041 Score=57.02 Aligned_cols=146 Identities=14% Similarity=0.207 Sum_probs=90.3
Q ss_pred ceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhcccc-ccCCCCCcceeeecCCCCCCCCCcccCCCCCCC
Q 042398 101 LILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLA-PFDEDNLIPCFGFGDATTHDQEVFSFHDDHTPC 179 (422)
Q Consensus 101 l~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~-~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~~~ 179 (422)
+++.||.|+|+.. .+..+.|...+..++. .+..+..+-++.|++... ..++++.
T Consensus 3 v~lvlD~SgSM~~-----------------~~rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~~--~~~~~~t------ 57 (178)
T cd01451 3 VIFVVDASGSMAA-----------------RHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTEA--EVLLPPT------ 57 (178)
T ss_pred EEEEEECCccCCC-----------------ccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCc--eEEeCCC------
Confidence 5788999999951 1345666666666664 344556899999976421 1122221
Q ss_pred CCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHH-Hc--CCceEEEEEEeCCcccccCCCCCCCCchhHHHHHHHHH
Q 042398 180 HGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVE-KS--GGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIV 256 (422)
Q Consensus 180 ~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~-~~--~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv 256 (422)
.+.+.+. +.+..+...|-|++..-+..+.+..+ +. .+.-.++++||||.-+...+ +......++..
T Consensus 58 ~~~~~~~----~~l~~l~~~G~T~l~~aL~~a~~~l~~~~~~~~~~~~ivliTDG~~~~g~~-------~~~~~~~~~~~ 126 (178)
T cd01451 58 RSVELAK----RRLARLPTGGGTPLAAGLLAAYELAAEQARDPGQRPLIVVITDGRANVGPD-------PTADRALAAAR 126 (178)
T ss_pred CCHHHHH----HHHHhCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCCC-------chhHHHHHHHH
Confidence 2344443 34455677899999999999998872 21 12247889999998764211 11112255555
Q ss_pred HhcCCCeeEEEEecCCCCc--ccccccc
Q 042398 257 AASSYPLSIVLVGVGDGPW--EDMQKFD 282 (422)
Q Consensus 257 ~AS~~PlSIiiVGVG~~~f--~~m~~LD 282 (422)
++...++.|+.||+|..+. +.|++|=
T Consensus 127 ~l~~~gi~v~~I~~~~~~~~~~~l~~iA 154 (178)
T cd01451 127 KLRARGISALVIDTEGRPVRRGLAKDLA 154 (178)
T ss_pred HHHhcCCcEEEEeCCCCccCccHHHHHH
Confidence 5667788889999987543 3455553
No 64
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=9.1e-05 Score=75.47 Aligned_cols=41 Identities=27% Similarity=0.716 Sum_probs=35.1
Q ss_pred Cccccccccccc----ccccCCCccchhhhhcC-----CCCCCccccccC
Q 042398 376 QACPICLTNAKD----LAFGCGHMTCRECGSRV-----SNCPICRQRITN 416 (422)
Q Consensus 376 ~~CpIC~~~~~~----v~l~CGH~fC~~Ci~~~-----~~CP~CR~~i~~ 416 (422)
..|.||+|.++. ..|||.|.|+..|+..| ..||+|+..+.+
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 499999999887 36799999999999987 459999997743
No 65
>PRK13685 hypothetical protein; Provisional
Probab=97.25 E-value=0.0021 Score=64.96 Aligned_cols=143 Identities=18% Similarity=0.193 Sum_probs=92.6
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCCCcceeeecCCCCCCCCCcccCCCCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHTP 178 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~~ 178 (422)
.+++++||-|+|+..+ +..+|..+.|-..+..++..+..+..+-++.|++... .+.++.
T Consensus 89 ~~vvlvlD~S~SM~~~-------------D~~p~RL~~ak~~~~~~l~~l~~~d~vglv~Fa~~a~---~~~p~t----- 147 (326)
T PRK13685 89 AVVMLVIDVSQSMRAT-------------DVEPNRLAAAQEAAKQFADELTPGINLGLIAFAGTAT---VLVSPT----- 147 (326)
T ss_pred ceEEEEEECCccccCC-------------CCCCCHHHHHHHHHHHHHHhCCCCCeEEEEEEcCcee---ecCCCC-----
Confidence 4689999999999632 1236888999999999999987677899999998642 122222
Q ss_pred CCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHH--------cCCceEEEEEEeCCcccccCCCCCCCCchhHHH
Q 042398 179 CHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEK--------SGGQYHVLVIIADGQVTRSVNTGDGELSSQEQK 250 (422)
Q Consensus 179 ~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~--------~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~ 250 (422)
...+.+ ...+..++..|-|+...-|..+.+..++ .+...-++++||||+-+...+. .. ...
T Consensus 148 -~d~~~l----~~~l~~l~~~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~~----~~--~~~ 216 (326)
T PRK13685 148 -TNREAT----KNAIDKLQLADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTNP----DN--PRG 216 (326)
T ss_pred -CCHHHH----HHHHHhCCCCCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCCC----CC--ccc
Confidence 233333 2334455566778888888888877652 1112345689999976541100 00 111
Q ss_pred HHHHHHHhcCCCeeEEEEecCCC
Q 042398 251 TIKSIVAASSYPLSIVLVGVGDG 273 (422)
Q Consensus 251 T~~aIv~AS~~PlSIiiVGVG~~ 273 (422)
..++...|.+..+.|-+||||..
T Consensus 217 ~~~aa~~a~~~gi~i~~Ig~G~~ 239 (326)
T PRK13685 217 AYTAARTAKDQGVPISTISFGTP 239 (326)
T ss_pred HHHHHHHHHHcCCeEEEEEECCC
Confidence 23455566677888888999873
No 66
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=97.25 E-value=0.0043 Score=61.55 Aligned_cols=139 Identities=18% Similarity=0.297 Sum_probs=91.8
Q ss_pred cccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCCCcceeeecCCCCCCCCCcccCCCCC
Q 042398 98 SSNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHT 177 (422)
Q Consensus 98 ~~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~ 177 (422)
..++++|||-|+|+... +-.++..| |+..|.+.+..-.. +.+-+.+||.... .+.+|+. +
T Consensus 60 ~~qIvlaID~S~SM~~~-------------~~~~~ale-ak~lIs~al~~Le~-g~vgVv~Fg~~~~---~v~Plt~--d 119 (266)
T cd01460 60 DYQILIAIDDSKSMSEN-------------NSKKLALE-SLCLVSKALTLLEV-GQLGVCSFGEDVQ---ILHPFDE--Q 119 (266)
T ss_pred CceEEEEEecchhcccc-------------cccccHHH-HHHHHHHHHHhCcC-CcEEEEEeCCCce---EeCCCCC--C
Confidence 35799999999999632 11356666 88888888887775 5799999998631 2233321 1
Q ss_pred CCCCHHHHHHHHHhhCCccccc-CCCChHHHHHHHHHHHHHcC----C--ceEEEEEEeCCcccccCCCCCCCCchhHHH
Q 042398 178 PCHGFEEVLACYRNIVPNLRLA-GPTSYAPVVEAAMDIVEKSG----G--QYHVLVIIADGQVTRSVNTGDGELSSQEQK 250 (422)
Q Consensus 178 ~~~G~~gvl~~Y~~~l~~v~l~-GPT~fapiI~~a~~~~~~~~----~--~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~ 250 (422)
+.. ++.-+++....+. +-|+.+..|..+++..++.. + .-.++||||||.-.+. +..
T Consensus 120 ----~~~--~a~~~~l~~~~f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~-----------e~~ 182 (266)
T cd01460 120 ----FSS--QSGPRILNQFTFQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFS-----------EGA 182 (266)
T ss_pred ----chh--hHHHHHhCcccCCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccC-----------ccH
Confidence 111 2223334433332 44899999999998765431 1 1279999999994331 223
Q ss_pred HHHHHHHhcCCCeeEEEEecCCC
Q 042398 251 TIKSIVAASSYPLSIVLVGVGDG 273 (422)
Q Consensus 251 T~~aIv~AS~~PlSIiiVGVG~~ 273 (422)
...++.+|....+.+++|||=+.
T Consensus 183 ~~~~~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 183 QKVRLREAREQNVFVVFIIIDNP 205 (266)
T ss_pred HHHHHHHHHHcCCeEEEEEEcCC
Confidence 34557888888999999999775
No 67
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.24 E-value=8.4e-05 Score=76.12 Aligned_cols=42 Identities=38% Similarity=0.945 Sum_probs=37.8
Q ss_pred Ccccccccccccccc-cCCCccchhhhhcC------CCCCCccccccCc
Q 042398 376 QACPICLTNAKDLAF-GCGHMTCRECGSRV------SNCPICRQRITNR 417 (422)
Q Consensus 376 ~~CpIC~~~~~~v~l-~CGH~fC~~Ci~~~------~~CP~CR~~i~~~ 417 (422)
..|.||-++-+++.+ ||||..|..|+..| ..||.||..|...
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 589999999999877 99999999999977 5799999999754
No 68
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.18 E-value=0.00012 Score=58.44 Aligned_cols=44 Identities=25% Similarity=0.378 Sum_probs=33.5
Q ss_pred cCCccccccccccc-ccccCCCccchhhhhcC-----CCCCCccccccCc
Q 042398 374 ETQACPICLTNAKD-LAFGCGHMTCRECGSRV-----SNCPICRQRITNR 417 (422)
Q Consensus 374 e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~-----~~CP~CR~~i~~~ 417 (422)
+.+.||||.+.+.+ ++++|||.|+..|+.++ ..||.|+.+++..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 56899999999999 66799999999999965 5699999998753
No 69
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=97.12 E-value=0.0016 Score=57.32 Aligned_cols=121 Identities=19% Similarity=0.323 Sum_probs=79.7
Q ss_pred ceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCCCcceeeecCCCCCCCCCcccCCCCCCCC
Q 042398 101 LILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHTPCH 180 (422)
Q Consensus 101 l~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~~~~ 180 (422)
+.||||-|+|-. .....+++..|..+++.+ ...+-++=|-++......+ .
T Consensus 1 i~vaiDtSGSis------------------~~~l~~fl~ev~~i~~~~--~~~v~vi~~D~~v~~~~~~----------~ 50 (126)
T PF09967_consen 1 IVVAIDTSGSIS------------------DEELRRFLSEVAGILRRF--PAEVHVIQFDAEVQDVQVF----------R 50 (126)
T ss_pred CEEEEECCCCCC------------------HHHHHHHHHHHHHHHHhC--CCCEEEEEECCEeeeeeEE----------e
Confidence 579999999973 146778899999999999 3447777777765432221 1
Q ss_pred CHHHHHHHHHhhCCcccc--cCCCChHHHHHHHHHHHHHcCCceEEEEEEeCCcccccCCCCCCCCchhHHHHHHHHHHh
Q 042398 181 GFEEVLACYRNIVPNLRL--AGPTSYAPVVEAAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAA 258 (422)
Q Consensus 181 G~~gvl~~Y~~~l~~v~l--~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~A 258 (422)
. +...+..+++ .|-|+|.|+++++.+. .....++++||||...... .+
T Consensus 51 ~-------~~~~~~~~~~~GgGGTdf~pvf~~~~~~----~~~~~~vi~fTDg~~~~~~-------------------~~ 100 (126)
T PF09967_consen 51 S-------LEDELRDIKLKGGGGTDFRPVFEYLEEN----RPRPSVVIYFTDGEGWPPE-------------------EA 100 (126)
T ss_pred c-------ccccccccccCCCCCCcchHHHHHHHhc----CCCCCEEEEEeCCCCCCCC-------------------CC
Confidence 1 1112222333 4789999999998754 3356788899999885411 12
Q ss_pred cCCCeeEEEEe--cCCCCccccccc
Q 042398 259 SSYPLSIVLVG--VGDGPWEDMQKF 281 (422)
Q Consensus 259 S~~PlSIiiVG--VG~~~f~~m~~L 281 (422)
=.+|.=|++.| -...||...-+|
T Consensus 101 P~~~vlWvl~~~~~~~~P~G~vv~l 125 (126)
T PF09967_consen 101 PPYPVLWVLPGNRNPKAPFGRVVRL 125 (126)
T ss_pred CCCcEEEEEeCCCCCCCCCEEEEEe
Confidence 27899999999 333466655444
No 70
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=97.08 E-value=0.0057 Score=57.62 Aligned_cols=139 Identities=9% Similarity=0.138 Sum_probs=95.1
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCC---------CCCcceeeecCCCCCCCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDE---------DNLIPCFGFGDATTHDQEV 169 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~---------D~~ip~~GFGa~~~~~~~v 169 (422)
+.+++.||-+.|.+. +.++++..-|..++..++. .-.+-+.-|+.... -.
T Consensus 20 ~DivfvlD~S~Sm~~------------------~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~---~~ 78 (193)
T cd01477 20 LDIVFVVDNSKGMTQ------------------GGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNAT---VV 78 (193)
T ss_pred eeEEEEEeCCCCcch------------------hhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceE---EE
Confidence 679999999999851 2477887777777776664 24677777776532 23
Q ss_pred cccCCCCCCCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHc-----CCceEEEEEEeCCcccccCCCCCCCC
Q 042398 170 FSFHDDHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKS-----GGQYHVLVIIADGQVTRSVNTGDGEL 244 (422)
Q Consensus 170 f~~~~~~~~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~-----~~~Y~VLlIiTDG~i~d~~~~~~~~~ 244 (422)
|+|+ .....++++++....++.+...|-|+...-|..|.+..... .+.--|+++||||.-.+..
T Consensus 79 ~~L~----d~~~~~~~~~ai~~~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~~------- 147 (193)
T cd01477 79 ADLN----DLQSFDDLYSQIQGSLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEGS------- 147 (193)
T ss_pred Eecc----cccCHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCCC-------
Confidence 5553 22457788888777666666667899999999998876542 2246789999998544310
Q ss_pred chhHHHHHHHHHHhcCCCeeEEEEecCCC
Q 042398 245 SSQEQKTIKSIVAASSYPLSIVLVGVGDG 273 (422)
Q Consensus 245 ~~~~~~T~~aIv~AS~~PlSIiiVGVG~~ 273 (422)
....++..++.+..+-|.-||||++
T Consensus 148 ----~~~~~~a~~l~~~GI~i~tVGiG~~ 172 (193)
T cd01477 148 ----NDPRPIAARLKSTGIAIITVAFTQD 172 (193)
T ss_pred ----CCHHHHHHHHHHCCCEEEEEEeCCC
Confidence 1123344445577999999999984
No 71
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=97.04 E-value=0.0049 Score=56.59 Aligned_cols=135 Identities=19% Similarity=0.285 Sum_probs=90.5
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCC---CCCcceeeecCCCCCCCCCcccCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDE---DNLIPCFGFGDATTHDQEVFSFHDD 175 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~---D~~ip~~GFGa~~~~~~~vf~~~~~ 175 (422)
+.+++.||=+.|-+ +..++++...+..++..++. .-.+-+..|+.... ..|+|..
T Consensus 1 ~Di~fvlD~S~S~~------------------~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~---~~~~l~~- 58 (177)
T cd01469 1 MDIVFVLDGSGSIY------------------PDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFR---TEFTLNE- 58 (177)
T ss_pred CcEEEEEeCCCCCC------------------HHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCcee---EEEecCc-
Confidence 35788899887763 24577888888888888876 45788888988632 2355531
Q ss_pred CCCCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHH--HHc---CCceEEEEEEeCCcccccCCCCCCCCchhHHH
Q 042398 176 HTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIV--EKS---GGQYHVLVIIADGQVTRSVNTGDGELSSQEQK 250 (422)
Q Consensus 176 ~~~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~--~~~---~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~ 250 (422)
-...+.++++=.. ++ .+.|.|+....|+.|.+.. ... .+.-.|+++||||.-+|.. .
T Consensus 59 ---~~~~~~~~~~i~~-~~--~~~g~T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~~------------~ 120 (177)
T cd01469 59 ---YRTKEEPLSLVKH-IS--QLLGLTNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDP------------L 120 (177)
T ss_pred ---cCCHHHHHHHHHh-Cc--cCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCcc------------c
Confidence 1234455544332 22 2578899999999998765 221 1246788999999998721 2
Q ss_pred HHHHHHHhcCCCeeEEEEecCCC
Q 042398 251 TIKSIVAASSYPLSIVLVGVGDG 273 (422)
Q Consensus 251 T~~aIv~AS~~PlSIiiVGVG~~ 273 (422)
+.+++..|-..-+-|.-||||+.
T Consensus 121 ~~~~~~~~k~~gv~v~~Vgvg~~ 143 (177)
T cd01469 121 LKDVIPQAEREGIIRYAIGVGGH 143 (177)
T ss_pred cHHHHHHHHHCCcEEEEEEeccc
Confidence 24455556667889999999985
No 72
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.03 E-value=0.00021 Score=57.20 Aligned_cols=36 Identities=36% Similarity=0.946 Sum_probs=27.8
Q ss_pred Cccccccccccc-------------ccc-cCCCccchhhhhcC----CCCCCcc
Q 042398 376 QACPICLTNAKD-------------LAF-GCGHMTCRECGSRV----SNCPICR 411 (422)
Q Consensus 376 ~~CpIC~~~~~~-------------v~l-~CGH~fC~~Ci~~~----~~CP~CR 411 (422)
..|.||++.+.+ +.+ +|||.|+..|+.++ ..||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 459999998821 233 89999999999965 6899998
No 73
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=96.91 E-value=0.0083 Score=56.76 Aligned_cols=156 Identities=17% Similarity=0.174 Sum_probs=90.3
Q ss_pred cceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCCCcceeeecCCCCCCCCCcccCCCCCCC
Q 042398 100 NLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHTPC 179 (422)
Q Consensus 100 nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~~~ 179 (422)
.++++||.|+|+.. ++ . .+..+-.-..|...|.+.+..|.+.....-.||++......-+ ..+.|.-
T Consensus 2 ~l~lavDlSgSM~~-----~~----~-~dg~~~~RL~a~k~v~~~f~~f~~~r~~DriG~~g~~~~~~~l---t~d~p~t 68 (191)
T cd01455 2 RLKLVVDVSGSMYR-----FN----G-YDGRLDRSLEAVVMVMEAFDGFEDKIQYDIIGHSGDGPCVPFV---KTNHPPK 68 (191)
T ss_pred ceEEEEECcHhHHH-----Hh----c-cCCccccHHHHHHHHHHHHHHHHHhCccceeeecCcccccCcc---ccccCcc
Confidence 47999999999952 21 1 2223334455666666666666677777778887654321111 2233333
Q ss_pred CCHH--HHHHHHHhhCCcccccCCCChHHHHHHHHHHHH-HcCCceEEEEEEeCCcccccCCCCCCCCchhHHHHHH-HH
Q 042398 180 HGFE--EVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVE-KSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIK-SI 255 (422)
Q Consensus 180 ~G~~--gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~-~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~-aI 255 (422)
..-+ .++...-.- -++-+.|+.- +.-|..+++..+ ++..+=.|+++||||.-+. +.++| .+ |-
T Consensus 69 ~d~~~~~~l~~~l~~-~q~g~ag~~T-adAi~~av~rl~~~~~a~~kvvILLTDG~n~~------~~i~P-----~~aAa 135 (191)
T cd01455 69 NNKERLETLKMMHAH-SQFCWSGDHT-VEATEFAIKELAAKEDFDEAIVIVLSDANLER------YGIQP-----KKLAD 135 (191)
T ss_pred cchhHHHHHHHHHHh-cccCccCccH-HHHHHHHHHHHHhcCcCCCcEEEEEeCCCcCC------CCCCh-----HHHHH
Confidence 3333 344333322 2445677643 377787877776 5544456889999998765 33444 22 22
Q ss_pred HHhcCCCeeEEEEecCCCCccccccc
Q 042398 256 VAASSYPLSIVLVGVGDGPWEDMQKF 281 (422)
Q Consensus 256 v~AS~~PlSIiiVGVG~~~f~~m~~L 281 (422)
.-|.+.-+=|-.||||..+.+.++.+
T Consensus 136 ~lA~~~gV~iytIgiG~~d~~~l~~i 161 (191)
T cd01455 136 ALAREPNVNAFVIFIGSLSDEADQLQ 161 (191)
T ss_pred HHHHhCCCEEEEEEecCCCHHHHHHH
Confidence 33556677788888888654444443
No 74
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.00039 Score=70.87 Aligned_cols=42 Identities=29% Similarity=0.775 Sum_probs=34.6
Q ss_pred CcCCccccccccccc--------------ccccCCCccchhhhhcC----CCCCCccccc
Q 042398 373 AETQACPICLTNAKD--------------LAFGCGHMTCRECGSRV----SNCPICRQRI 414 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~--------------v~l~CGH~fC~~Ci~~~----~~CP~CR~~i 414 (422)
.++..|.||+|.... -.+||||.++-.|++.| ..||+||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 456899999997322 24699999999999976 7899999994
No 75
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.88 E-value=0.00054 Score=71.29 Aligned_cols=44 Identities=30% Similarity=0.706 Sum_probs=36.9
Q ss_pred CCcCCccccccccccc-c----cccCCCccchhhhhcC--CCCCCcccccc
Q 042398 372 VAETQACPICLTNAKD-L----AFGCGHMTCRECGSRV--SNCPICRQRIT 415 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~-v----~l~CGH~fC~~Ci~~~--~~CP~CR~~i~ 415 (422)
+.|..+||||++.+-. + .+.|.|.|...|+.+| ..||+||...+
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhcccCcChhhhhhcC
Confidence 5677899999998877 2 3499999999999988 68999997654
No 76
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=96.86 E-value=0.012 Score=53.89 Aligned_cols=141 Identities=15% Similarity=0.265 Sum_probs=89.1
Q ss_pred cceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccC---CCCCcceeeecCCCCCCCCCcccCCCC
Q 042398 100 NLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFD---EDNLIPCFGFGDATTHDQEVFSFHDDH 176 (422)
Q Consensus 100 nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD---~D~~ip~~GFGa~~~~~~~vf~~~~~~ 176 (422)
.+.+.||=|.|-+ ...++++..-+..++..|+ +.-.+.+.-|+.... ..|+|+--
T Consensus 2 DivfllD~S~Si~------------------~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~---~~~~l~~~- 59 (165)
T cd01481 2 DIVFLIDGSDNVG------------------SGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPR---PEFYLNTH- 59 (165)
T ss_pred CEEEEEeCCCCcC------------------HHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCee---EEEecccc-
Confidence 4678888877764 2456777777777777776 456788888887642 23665421
Q ss_pred CCCCCHHHHHHHHHhhCCcccc-cC-CCChHHHHHHHHHHHHH--c-----CCceEEEEEEeCCcccccCCCCCCCCchh
Q 042398 177 TPCHGFEEVLACYRNIVPNLRL-AG-PTSYAPVVEAAMDIVEK--S-----GGQYHVLVIIADGQVTRSVNTGDGELSSQ 247 (422)
Q Consensus 177 ~~~~G~~gvl~~Y~~~l~~v~l-~G-PT~fapiI~~a~~~~~~--~-----~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~ 247 (422)
...++++++-.+ ++. .| .|+-...|+.+.+..-. . .+--.||++||||.-+|.
T Consensus 60 ---~~~~~l~~~i~~----i~~~~g~~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d~----------- 121 (165)
T cd01481 60 ---STKADVLGAVRR----LRLRGGSQLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQDD----------- 121 (165)
T ss_pred ---CCHHHHHHHHHh----cccCCCCcccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcch-----------
Confidence 245667665443 333 45 47888888888765321 1 123579999999997761
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCCccccccccC
Q 042398 248 EQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFDD 283 (422)
Q Consensus 248 ~~~T~~aIv~AS~~PlSIiiVGVG~~~f~~m~~LD~ 283 (422)
..+..+.+. +.-+-|+.||+|..+...|+.+-+
T Consensus 122 ~~~~a~~lr---~~gv~i~~vG~~~~~~~eL~~ias 154 (165)
T cd01481 122 VERPAVALK---RAGIVPFAIGARNADLAELQQIAF 154 (165)
T ss_pred HHHHHHHHH---HCCcEEEEEeCCcCCHHHHHHHhC
Confidence 223333443 456777888888766666665554
No 77
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0011 Score=65.13 Aligned_cols=44 Identities=25% Similarity=0.711 Sum_probs=35.8
Q ss_pred CCcCCcccccccccccc-cc-cCCCccchhhhhcC------CCCCCcccccc
Q 042398 372 VAETQACPICLTNAKDL-AF-GCGHMTCRECGSRV------SNCPICRQRIT 415 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~v-~l-~CGH~fC~~Ci~~~------~~CP~CR~~i~ 415 (422)
.....+|++|-+.+..+ +. +|||.+|..|+... ..||.|.....
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 34567999999999983 33 79999999999953 58999988765
No 78
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=96.71 E-value=0.045 Score=51.90 Aligned_cols=155 Identities=12% Similarity=0.200 Sum_probs=96.6
Q ss_pred cceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccc---cCCCCCcceeeecCCCCC----CCCCccc
Q 042398 100 NLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAP---FDEDNLIPCFGFGDATTH----DQEVFSF 172 (422)
Q Consensus 100 nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~---yD~D~~ip~~GFGa~~~~----~~~vf~~ 172 (422)
.++++||.+.|+... + -+..++..+.|+..+..+++. ....-.+-++.||...+. ..+++.+
T Consensus 3 ~ivf~iDvS~SM~~~----------~-~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~ 71 (218)
T cd01458 3 SVVFLVDVSPSMFES----------K-DGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVL 71 (218)
T ss_pred EEEEEEeCCHHHcCC----------C-CCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEe
Confidence 478999999999621 0 011368999999999999997 566668999999987533 2345444
Q ss_pred CCCCCCCCCHHHHHHHHHhhCCccc--------ccCCCChHHHHHHHHHHHHHcC-C-ceEEEEEEeCCcccccCCCCCC
Q 042398 173 HDDHTPCHGFEEVLACYRNIVPNLR--------LAGPTSYAPVVEAAMDIVEKSG-G-QYHVLVIIADGQVTRSVNTGDG 242 (422)
Q Consensus 173 ~~~~~~~~G~~gvl~~Y~~~l~~v~--------l~GPT~fapiI~~a~~~~~~~~-~-~Y~VLlIiTDG~i~d~~~~~~~ 242 (422)
.|=+ .... +.++.+.+.+.... -.+.|.+...|..+.+...+.. . .=-.+++||||.=.- +
T Consensus 72 ~~l~--~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~------~ 142 (218)
T cd01458 72 LDLD--TPGA-ERVEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPH------G 142 (218)
T ss_pred ecCC--CCCH-HHHHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCC------C
Confidence 3311 1122 33344444332221 2457899999999988776521 1 124678889996320 0
Q ss_pred CCchhHHHHHHHHHHhcCCCeeEEEEecCCCC
Q 042398 243 ELSSQEQKTIKSIVAASSYPLSIVLVGVGDGP 274 (422)
Q Consensus 243 ~~~~~~~~T~~aIv~AS~~PlSIiiVGVG~~~ 274 (422)
.=.-..++..+.+.+..+.-+.|..||+|..+
T Consensus 143 ~~~~~~~~~~~~a~~l~~~gI~i~~i~i~~~~ 174 (218)
T cd01458 143 GDSIKDSQAAVKAEDLKDKGIELELFPLSSPG 174 (218)
T ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCCC
Confidence 00001244455666677778999999998754
No 79
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.00068 Score=64.83 Aligned_cols=45 Identities=27% Similarity=0.705 Sum_probs=39.5
Q ss_pred ccccccccccccc-ccCCCcc-chhhhhcCCCCCCccccccCccccC
Q 042398 377 ACPICLTNAKDLA-FGCGHMT-CRECGSRVSNCPICRQRITNRLRLF 421 (422)
Q Consensus 377 ~CpIC~~~~~~v~-l~CGH~f-C~~Ci~~~~~CP~CR~~i~~~i~vy 421 (422)
.|..|.+....++ +||.|.+ |..|......||+|+.+....+.+|
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVN 206 (207)
T ss_pred cceecCcCCceEEeecccceEecccccccCccCCCCcChhhceeecc
Confidence 3999999998854 4999995 9999988889999999999888876
No 80
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=96.53 E-value=0.022 Score=53.63 Aligned_cols=160 Identities=10% Similarity=0.167 Sum_probs=99.1
Q ss_pred ceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCC---CCCcceeeecCCCCCCCCCcccCCCCC
Q 042398 101 LILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDE---DNLIPCFGFGDATTHDQEVFSFHDDHT 177 (422)
Q Consensus 101 l~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~---D~~ip~~GFGa~~~~~~~vf~~~~~~~ 177 (422)
.+|+||.+.|+... +-.||.++.+...+..++..|-+ ...+-+..|+++.... +.+++.
T Consensus 6 ~vi~lD~S~sM~a~-------------D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v--~~plT~--- 67 (187)
T cd01452 6 TMICIDNSEYMRNG-------------DYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEV--LVTLTN--- 67 (187)
T ss_pred EEEEEECCHHHHcC-------------CCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEE--EECCCC---
Confidence 68999999987531 11479999999999988755432 3467778888743211 122222
Q ss_pred CCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcC---CceEEEEEEeCCcccccCCCCCCCCchhHHHHHHH
Q 042398 178 PCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSG---GQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKS 254 (422)
Q Consensus 178 ~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~---~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~a 254 (422)
..+.++. .+..+.+.|.|++...|+.|....+... ..=-|++|++++.-.| ++...++
T Consensus 68 ---D~~~~~~----~L~~i~~~g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d------------~~~i~~~ 128 (187)
T cd01452 68 ---DQGKILS----KLHDVQPKGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEED------------EKDLVKL 128 (187)
T ss_pred ---CHHHHHH----HHHhCCCCCcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCC------------HHHHHHH
Confidence 2344433 3345667799999999998887665332 2225566666664344 3455677
Q ss_pred HHHhcCCCeeEEEEecCCCC--ccccccccCCCCCcccccceecchh
Q 042398 255 IVAASSYPLSIVLVGVGDGP--WEDMQKFDDKIPAREFDNFQFVNFT 299 (422)
Q Consensus 255 Iv~AS~~PlSIiiVGVG~~~--f~~m~~LD~~~~~r~rDnvqFV~f~ 299 (422)
+.++.+..+.+-+||+|+.. =+.++.|-+.... -|+-+||...
T Consensus 129 ~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~~--~~~s~~~~~~ 173 (187)
T cd01452 129 AKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNG--KDGSHLVSVP 173 (187)
T ss_pred HHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhcC--CCCceEEEeC
Confidence 77777889999999999762 2333333322221 2666776543
No 81
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.00076 Score=72.94 Aligned_cols=42 Identities=29% Similarity=0.710 Sum_probs=35.5
Q ss_pred CcCCccccccccccc-----c-cccCCCccchhhhhcC----CCCCCccccc
Q 042398 373 AETQACPICLTNAKD-----L-AFGCGHMTCRECGSRV----SNCPICRQRI 414 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~-----v-~l~CGH~fC~~Ci~~~----~~CP~CR~~i 414 (422)
.....|+||.+.+.. + .++|||.||..|+..| ..||+||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 346799999998877 3 4599999999999977 7899999943
No 82
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=96.49 E-value=0.035 Score=60.87 Aligned_cols=156 Identities=14% Similarity=0.214 Sum_probs=99.9
Q ss_pred cccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhcccc-ccCCCCCcceeeecCCCCCCCCCcccCCCC
Q 042398 98 SSNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLA-PFDEDNLIPCFGFGDATTHDQEVFSFHDDH 176 (422)
Q Consensus 98 ~~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~-~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~ 176 (422)
...+++.||.|+|+. .|.-..|-.++-.+|. .|-..-.+-++.|+.... ..+++.
T Consensus 401 ~~~vvfvvD~SGSM~------------------~~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a--~~~lpp---- 456 (584)
T PRK13406 401 ETTTIFVVDASGSAA------------------LHRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGA--ELLLPP---- 456 (584)
T ss_pred CccEEEEEECCCCCc------------------HhHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCce--eEEcCC----
Confidence 467899999999983 1355556666666563 465556899999965411 112221
Q ss_pred CCCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHc--CCceEEEEEEeCCcccccCCCCCCCCchhHHHHHHH
Q 042398 177 TPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKS--GGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKS 254 (422)
Q Consensus 177 ~~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~--~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~a 254 (422)
-..++.+ ++.+..+.-.|-|.++.-|..+.+..++. .+.-.++|+||||.-+...+...|. ....++..++
T Consensus 457 --T~~~~~~----~~~L~~l~~gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~-~~~~~~~~~~ 529 (584)
T PRK13406 457 --TRSLVRA----KRSLAGLPGGGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGR-AQAEEDALAA 529 (584)
T ss_pred --CcCHHHH----HHHHhcCCCCCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccc-cchhhHHHHH
Confidence 1234444 34555777889999999999999876653 2335788999999976421111011 1122445555
Q ss_pred HHHhcCCCeeEEEEecCCCCccccccccCC
Q 042398 255 IVAASSYPLSIVLVGVGDGPWEDMQKFDDK 284 (422)
Q Consensus 255 Iv~AS~~PlSIiiVGVG~~~f~~m~~LD~~ 284 (422)
...+...-+.+++|+.|..+...|++|=+.
T Consensus 530 a~~~~~~gi~~~vId~g~~~~~~~~~LA~~ 559 (584)
T PRK13406 530 ARALRAAGLPALVIDTSPRPQPQARALAEA 559 (584)
T ss_pred HHHHHhcCCeEEEEecCCCCcHHHHHHHHh
Confidence 666666778899999998877777776543
No 83
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.47 E-value=0.0014 Score=49.75 Aligned_cols=43 Identities=28% Similarity=0.726 Sum_probs=35.1
Q ss_pred cCCccccccccccc-ccccCCCccchhhhh--cCCCCCCccccccC
Q 042398 374 ETQACPICLTNAKD-LAFGCGHMTCRECGS--RVSNCPICRQRITN 416 (422)
Q Consensus 374 e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~--~~~~CP~CR~~i~~ 416 (422)
....|..|...-.. ++++|||..|..|.. +...||.|..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChhhccCCCCCCCcccC
Confidence 44678888877655 788999999999988 56889999998864
No 84
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=96.44 E-value=0.036 Score=60.77 Aligned_cols=154 Identities=14% Similarity=0.159 Sum_probs=92.7
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccc-cCCCCCcceeeecCCCCCCCCCcccCCCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAP-FDEDNLIPCFGFGDATTHDQEVFSFHDDHT 177 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~-yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~ 177 (422)
..+++.||-|+|+.. +..+.|-..+..++.. |-..-.+-++.|+.... ..++++
T Consensus 408 ~~v~fvvD~SGSM~~------------------~rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~a--~~~lp~----- 462 (589)
T TIGR02031 408 RLLIFVVDASGSAAV------------------ARMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAA--EVLLPP----- 462 (589)
T ss_pred ceEEEEEECCCCCCh------------------HHHHHHHHHHHHHHHhhccCCCEEEEEEECCCCc--eEECCC-----
Confidence 458899999999841 3466666666666653 43333699999975421 112222
Q ss_pred CCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcC--CceEEEEEEeCCcccccCCCC-CC---CCchhHHHH
Q 042398 178 PCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSG--GQYHVLVIIADGQVTRSVNTG-DG---ELSSQEQKT 251 (422)
Q Consensus 178 ~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~--~~Y~VLlIiTDG~i~d~~~~~-~~---~~~~~~~~T 251 (422)
-.+.+.+ ++.+..+...|.|.++.-|..+.+..++.. ..-.++++||||.-+-..+.. ++ ..-+-.++.
T Consensus 463 -t~~~~~~----~~~L~~l~~gGgTpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~~~~~~~~~~~~~~ 537 (589)
T TIGR02031 463 -SRSVEQA----KRRLDVLPGGGGTPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGNIPLDGDPESIKADREQAAEEA 537 (589)
T ss_pred -CCCHHHH----HHHHhcCCCCCCCcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCCCCCCcccccccccchhHHHHH
Confidence 2344444 345778888999999999999998876532 223678999999865311100 00 000101222
Q ss_pred HHHHHHhcCCCeeEEEEecCCCCc--ccccccc
Q 042398 252 IKSIVAASSYPLSIVLVGVGDGPW--EDMQKFD 282 (422)
Q Consensus 252 ~~aIv~AS~~PlSIiiVGVG~~~f--~~m~~LD 282 (422)
..+........+.+++||+|.+.. +.|++|=
T Consensus 538 ~~~a~~~~~~gi~~~vid~~~~~~~~~~~~~lA 570 (589)
T TIGR02031 538 LALARKIREAGMPALVIDTAMRFVSTGFAQKLA 570 (589)
T ss_pred HHHHHHHHhcCCeEEEEeCCCCCccchHHHHHH
Confidence 222333345678999999998644 3366654
No 85
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.0013 Score=68.44 Aligned_cols=45 Identities=29% Similarity=0.775 Sum_probs=38.2
Q ss_pred CCcCCccccccccccc-ccccCCCccchhhhhcC----CCCCCccccccC
Q 042398 372 VAETQACPICLTNAKD-LAFGCGHMTCRECGSRV----SNCPICRQRITN 416 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~ 416 (422)
...++.|.||+..+-. ++++|||.||..|+.+. ..||.||..+..
T Consensus 81 ~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred ccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 3567999999999988 67799999999997753 689999998764
No 86
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=96.31 E-value=0.038 Score=54.68 Aligned_cols=134 Identities=19% Similarity=0.199 Sum_probs=78.0
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccc-cCCCCCcceeeecCCCCCCCCCcccCCCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAP-FDEDNLIPCFGFGDATTHDQEVFSFHDDHT 177 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~-yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~ 177 (422)
+++++.||.|+|.. +..+.|..++...+.. +..+..+-++.|+..... ++.|.
T Consensus 54 ~~vvlvlD~SgSM~-------------------~~~~~a~~a~~~~l~~~l~~~d~v~lv~f~~~~~~---~~~~t---- 107 (296)
T TIGR03436 54 LTVGLVIDTSGSMR-------------------NDLDRARAAAIRFLKTVLRPNDRVFVVTFNTRLRL---LQDFT---- 107 (296)
T ss_pred ceEEEEEECCCCch-------------------HHHHHHHHHHHHHHHhhCCCCCEEEEEEeCCceeE---eecCC----
Confidence 78999999999984 1234555666666655 556778999999986432 22332
Q ss_pred CCCCHHHHHHHHHhhCC-----------cccccCCCChHHHHHHHHH-HHHHcC----CceEEEEEEeCCcccccCCCCC
Q 042398 178 PCHGFEEVLACYRNIVP-----------NLRLAGPTSYAPVVEAAMD-IVEKSG----GQYHVLVIIADGQVTRSVNTGD 241 (422)
Q Consensus 178 ~~~G~~gvl~~Y~~~l~-----------~v~l~GPT~fapiI~~a~~-~~~~~~----~~Y~VLlIiTDG~i~d~~~~~~ 241 (422)
...+.+.++-...-+ .+...|.|++..-|..++. ...+.. +. -++++||||.-+..
T Consensus 108 --~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~r-k~iIllTDG~~~~~----- 179 (296)
T TIGR03436 108 --SDPRLLEAALNRLKPPLRTDYNSSGAFVRDGGGTALYDAITLAALEQLANALAGIPGR-KALIVISDGGDNRS----- 179 (296)
T ss_pred --CCHHHHHHHHHhccCCCccccccccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCC-eEEEEEecCCCcch-----
Confidence 224444444433322 1233688887777765543 322221 22 57899999965431
Q ss_pred CCCchhHHHHHHHHHHhcCCCeeEEEEecCC
Q 042398 242 GELSSQEQKTIKSIVAASSYPLSIVLVGVGD 272 (422)
Q Consensus 242 ~~~~~~~~~T~~aIv~AS~~PlSIiiVGVG~ 272 (422)
.....+++..+...-+.|-.||+|+
T Consensus 180 ------~~~~~~~~~~~~~~~v~vy~I~~~~ 204 (296)
T TIGR03436 180 ------RDTLERAIDAAQRADVAIYSIDARG 204 (296)
T ss_pred ------HHHHHHHHHHHHHcCCEEEEeccCc
Confidence 1122233333344567888888875
No 87
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.0017 Score=65.85 Aligned_cols=49 Identities=27% Similarity=0.746 Sum_probs=39.6
Q ss_pred CCCCCCcCCcccccccccccccc-cCCCccchhhhhcC----CCCCCccccccC
Q 042398 368 GSTPVAETQACPICLTNAKDLAF-GCGHMTCRECGSRV----SNCPICRQRITN 416 (422)
Q Consensus 368 s~~~~~e~~~CpIC~~~~~~v~l-~CGH~fC~~Ci~~~----~~CP~CR~~i~~ 416 (422)
.+.|..|+..||||+....+.++ ||+|.-|+.|+.+. +.|=.|+..+..
T Consensus 415 ~~lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 415 KDLPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred CCCCCcccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 34445678899999999999655 99999999999953 678888887654
No 88
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=96.30 E-value=0.0018 Score=65.21 Aligned_cols=45 Identities=33% Similarity=0.891 Sum_probs=39.3
Q ss_pred CCcCCcccccccccccccccC--CCccchhhhh-cCCCCCCccccccC
Q 042398 372 VAETQACPICLTNAKDLAFGC--GHMTCRECGS-RVSNCPICRQRITN 416 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~v~l~C--GH~fC~~Ci~-~~~~CP~CR~~i~~ 416 (422)
..+-+.||||.+.+....+.| ||..|..|-. ....||.||.++..
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVSNKCPTCRLPIGN 92 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhhhcccCCcccccccc
Confidence 456789999999999989988 8999999995 45789999999983
No 89
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.15 E-value=0.0025 Score=52.69 Aligned_cols=25 Identities=32% Similarity=0.717 Sum_probs=21.9
Q ss_pred cCCCccchhhhhcC-------CCCCCcccccc
Q 042398 391 GCGHMTCRECGSRV-------SNCPICRQRIT 415 (422)
Q Consensus 391 ~CGH~fC~~Ci~~~-------~~CP~CR~~i~ 415 (422)
.|+|.|+..|+.++ ..||+||++..
T Consensus 51 ~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 51 KCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred cCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 89999999999965 57999999864
No 90
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=95.76 E-value=0.17 Score=56.03 Aligned_cols=141 Identities=14% Similarity=0.195 Sum_probs=86.8
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhcccc-ccCCCCCcceeeecCCCCCCCCCcccCCCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLA-PFDEDNLIPCFGFGDATTHDQEVFSFHDDHT 177 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~-~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~ 177 (422)
..+++.||.|+|+.. .+..+.|...+..++. .|-..-.+-+++|++... ..++++
T Consensus 466 ~~vv~vvD~SgSM~~-----------------~~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~~a--~~~~p~----- 521 (633)
T TIGR02442 466 NLVIFVVDASGSMAA-----------------RGRMAAAKGAVLSLLRDAYQKRDKVALITFRGEEA--EVLLPP----- 521 (633)
T ss_pred ceEEEEEECCccCCC-----------------ccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCc--eEEcCC-----
Confidence 468899999999951 1456666666666653 465666899999975411 112222
Q ss_pred CCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHH----cCCceEEEEEEeCCcccccCCCCCCCCchhHHHHHH
Q 042398 178 PCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEK----SGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIK 253 (422)
Q Consensus 178 ~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~----~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~ 253 (422)
-.+.+.+. ..+..+...|-|.++.-|..+.+.... ....-.++++||||.-+.. +. + .+..++..+
T Consensus 522 -t~~~~~~~----~~L~~l~~gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~-~~--~--~~~~~~~~~ 591 (633)
T TIGR02442 522 -TSSVELAA----RRLEELPTGGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVA-DG--G--EPPTDDART 591 (633)
T ss_pred -CCCHHHHH----HHHHhCCCCCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCC-CC--C--CChHHHHHH
Confidence 13344332 345566778999999999999988763 2233467889999987652 11 0 011233333
Q ss_pred HHHHhcCCCeeEEEEecCCC
Q 042398 254 SIVAASSYPLSIVLVGVGDG 273 (422)
Q Consensus 254 aIv~AS~~PlSIiiVGVG~~ 273 (422)
+-.......+-+++|+.+.+
T Consensus 592 ~a~~l~~~~i~~~vIdt~~~ 611 (633)
T TIGR02442 592 IAAKLAARGILFVVIDTESG 611 (633)
T ss_pred HHHHHHhcCCeEEEEeCCCC
Confidence 33333445677788887664
No 91
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.0041 Score=63.68 Aligned_cols=45 Identities=27% Similarity=0.680 Sum_probs=36.9
Q ss_pred CcCCccccccccccccc---------ccCCCccchhhhhcC-----------CCCCCccccccCc
Q 042398 373 AETQACPICLTNAKDLA---------FGCGHMTCRECGSRV-----------SNCPICRQRITNR 417 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~v~---------l~CGH~fC~~Ci~~~-----------~~CP~CR~~i~~~ 417 (422)
..+..|.||++...+.. .+|.|.||..|+..| +.||.||......
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence 35679999999887744 479999999999965 5799999987654
No 92
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.52 E-value=0.0064 Score=61.70 Aligned_cols=46 Identities=30% Similarity=0.819 Sum_probs=38.6
Q ss_pred CCcCCccccccccccc-ccccCCCccchhhhhcC------CCCCCccccccCc
Q 042398 372 VAETQACPICLTNAKD-LAFGCGHMTCRECGSRV------SNCPICRQRITNR 417 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~------~~CP~CR~~i~~~ 417 (422)
-+++..|.||-.-..- .++||+|..|.-|..++ +.||+||.....+
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred ccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccceE
Confidence 4667899999998887 56799999999999864 7899999876554
No 93
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=95.31 E-value=0.0041 Score=62.74 Aligned_cols=47 Identities=23% Similarity=0.528 Sum_probs=38.8
Q ss_pred CCcCCccccccccccccc--ccCCCccchhhhhcC----CCCCCccccccCcc
Q 042398 372 VAETQACPICLTNAKDLA--FGCGHMTCRECGSRV----SNCPICRQRITNRL 418 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~v~--l~CGH~fC~~Ci~~~----~~CP~CR~~i~~~i 418 (422)
......|.+|..++.|.+ .-|-|.||..|+.+. ..||.|...+....
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCcc
Confidence 345679999999999943 399999999999854 78999999886653
No 94
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.30 E-value=0.0068 Score=57.31 Aligned_cols=42 Identities=29% Similarity=0.721 Sum_probs=34.7
Q ss_pred Cccccccccccc-ccccCCCccchhhhhcC----CCCCCccccccCc
Q 042398 376 QACPICLTNAKD-LAFGCGHMTCRECGSRV----SNCPICRQRITNR 417 (422)
Q Consensus 376 ~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~~ 417 (422)
+.|.||..-+.. ++..|||.||..|..+- ..|-+|.+.....
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G~ 243 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYGR 243 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhccc
Confidence 699999998888 77799999999998842 6799998765443
No 95
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=95.01 E-value=0.016 Score=60.46 Aligned_cols=46 Identities=37% Similarity=0.889 Sum_probs=39.0
Q ss_pred CCcCCccccccccccccc--ccCCCccchhhhhcC----CCCCCccccccCc
Q 042398 372 VAETQACPICLTNAKDLA--FGCGHMTCRECGSRV----SNCPICRQRITNR 417 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~v~--l~CGH~fC~~Ci~~~----~~CP~CR~~i~~~ 417 (422)
+++++.|++|.....+.+ ..|||.||..|+..+ ..||.|+..+...
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchh
Confidence 678899999999999943 499999999999965 5799998877543
No 96
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.011 Score=58.99 Aligned_cols=43 Identities=26% Similarity=0.639 Sum_probs=36.4
Q ss_pred Cccccccccccc-ccccCCCccchhhhhcC----CCCCCccccccCcc
Q 042398 376 QACPICLTNAKD-LAFGCGHMTCRECGSRV----SNCPICRQRITNRL 418 (422)
Q Consensus 376 ~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~~i 418 (422)
..|-||...+.+ ++..|||.||..|.... ..|.+|.+.+...+
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSF 289 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccCCcceeccccccccc
Confidence 479999999999 77799999999998843 57999998876543
No 97
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=0.015 Score=56.67 Aligned_cols=44 Identities=18% Similarity=0.496 Sum_probs=37.7
Q ss_pred cCCccccccccccc----ccc-cCCCccchhhhhcC----CCCCCccccccCc
Q 042398 374 ETQACPICLTNAKD----LAF-GCGHMTCRECGSRV----SNCPICRQRITNR 417 (422)
Q Consensus 374 e~~~CpIC~~~~~~----v~l-~CGH~fC~~Ci~~~----~~CP~CR~~i~~~ 417 (422)
....||||.+.+.+ ++| +|||++|.+|..++ ..||+|-.++..+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence 56899999999998 355 99999999999976 5799999988654
No 98
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=94.69 E-value=0.24 Score=47.51 Aligned_cols=105 Identities=19% Similarity=0.164 Sum_probs=64.7
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCCCcceeeecCCCCCCCCCcccCCCCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHTP 178 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~~ 178 (422)
..++|.+|-|+|+.. |. --+.+.+.+ +...+. .+-+|-|+.........+ .
T Consensus 58 ~~lvvl~DvSGSM~~------------~s----~~~l~~~~~---l~~~~~---~~~~f~F~~~l~~vT~~l--~----- 108 (222)
T PF05762_consen 58 RRLVVLCDVSGSMAG------------YS----EFMLAFLYA---LQRQFR---RVRVFVFSTRLTEVTPLL--R----- 108 (222)
T ss_pred ccEEEEEeCCCChHH------------HH----HHHHHHHHH---HHHhCC---CEEEEEEeeehhhhhhhh--c-----
Confidence 369999999999952 10 112222222 222222 688999998653322222 1
Q ss_pred CCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcCCceEEEEEEeCCccc
Q 042398 179 CHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSGGQYHVLVIIADGQVT 234 (422)
Q Consensus 179 ~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~ 234 (422)
-.+..+.+......... ++|-|++...++++.+......-.-.++|||+||.=+
T Consensus 109 ~~~~~~~l~~~~~~~~~--~~GgTdi~~aL~~~~~~~~~~~~~~t~vvIiSDg~~~ 162 (222)
T PF05762_consen 109 RRDPEEALARLSALVQS--FGGGTDIGQALREFLRQYARPDLRRTTVVIISDGWDT 162 (222)
T ss_pred cCCHHHHHHHHHhhccC--CCCccHHHHHHHHHHHHhhcccccCcEEEEEeccccc
Confidence 12445555554433333 8999999999999998876433256889999999433
No 99
>PRK10997 yieM hypothetical protein; Provisional
Probab=94.43 E-value=0.62 Score=50.10 Aligned_cols=144 Identities=17% Similarity=0.147 Sum_probs=83.8
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHH-HHHHhccccccCCCCCcceeeecCCCCCCCCCcccCCCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKA-ITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHT 177 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~A-I~~ig~il~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~ 177 (422)
-.++|.||-|+|.. |. +-.|.+| .-+++.+...=+ ..+-++.|++..... .+.
T Consensus 324 GpiII~VDtSGSM~--G~--------------ke~~AkalAaAL~~iAl~q~--dr~~li~Fs~~i~~~----~l~---- 377 (487)
T PRK10997 324 GPFIVCVDTSGSMG--GF--------------NEQCAKAFCLALMRIALAEN--RRCYIMLFSTEVVTY----ELT---- 377 (487)
T ss_pred CcEEEEEECCCCCC--CC--------------HHHHHHHHHHHHHHHHHhcC--CCEEEEEecCCceee----ccC----
Confidence 45999999999994 20 1256555 334444433222 346688898864321 121
Q ss_pred CCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcCCceEEEEEEeCCcccccCCCCCCCCchhHHHHHHHHHH
Q 042398 178 PCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVA 257 (422)
Q Consensus 178 ~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~ 257 (422)
.-.|+..+++.-.. .+.|.|++++.++.+++..++..-+=-.+|||||+...... ....+.++.+.+
T Consensus 378 ~~~gl~~ll~fL~~-----~f~GGTDl~~aL~~al~~l~~~~~r~adIVVISDF~~~~~~--------eel~~~L~~Lk~ 444 (487)
T PRK10997 378 GPDGLEQAIRFLSQ-----SFRGGTDLAPCLRAIIEKMQGREWFDADAVVISDFIAQRLP--------DELVAKVKELQR 444 (487)
T ss_pred CccCHHHHHHHHHH-----hcCCCCcHHHHHHHHHHHHcccccCCceEEEECCCCCCCCh--------HHHHHHHHHHHH
Confidence 23578887775533 35899999999999998877543233678999999654310 112334444444
Q ss_pred hcCCCeeEEEEecCC-CCccccccccC
Q 042398 258 ASSYPLSIVLVGVGD-GPWEDMQKFDD 283 (422)
Q Consensus 258 AS~~PlSIiiVGVG~-~~f~~m~~LD~ 283 (422)
....=+--+.| |+ +.=+-|+.||.
T Consensus 445 ~~~~rf~~l~i--~~~~~p~l~~ifD~ 469 (487)
T PRK10997 445 QHQHRFHAVAM--SAHGKPGIMRIFDH 469 (487)
T ss_pred hcCcEEEEEEe--CCCCCchHHHhcCe
Confidence 44444444444 43 22233666663
No 100
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.31 E-value=0.024 Score=55.85 Aligned_cols=45 Identities=18% Similarity=0.493 Sum_probs=37.4
Q ss_pred CCcCCccccccccccc----ccc-cCCCccchhhhhcCC---CCCCccccccC
Q 042398 372 VAETQACPICLTNAKD----LAF-GCGHMTCRECGSRVS---NCPICRQRITN 416 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~----v~l-~CGH~fC~~Ci~~~~---~CP~CR~~i~~ 416 (422)
....+.|||+...+.. +.+ +|||+|+..++..+. .||+|-.++..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCCcccc
Confidence 4566899999988754 444 999999999999775 79999999874
No 101
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.23 E-value=0.011 Score=65.19 Aligned_cols=45 Identities=27% Similarity=0.558 Sum_probs=36.6
Q ss_pred cCCccccccccccc--c--cccCCCccchhhhhcC----CCCCCccccccCcc
Q 042398 374 ETQACPICLTNAKD--L--AFGCGHMTCRECGSRV----SNCPICRQRITNRL 418 (422)
Q Consensus 374 e~~~CpIC~~~~~~--v--~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~~i 418 (422)
....|++|+....+ + -..|+|.||..|+..| ..||+||..+..++
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheee
Confidence 34689999988877 2 2399999999999987 67999999887654
No 102
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=0.03 Score=56.61 Aligned_cols=50 Identities=24% Similarity=0.640 Sum_probs=37.6
Q ss_pred CcCCccccccccccc-ccc-cCCCccchhhhhcC----CCCCCccccc--cCccccCC
Q 042398 373 AETQACPICLTNAKD-LAF-GCGHMTCRECGSRV----SNCPICRQRI--TNRLRLFA 422 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~-v~l-~CGH~fC~~Ci~~~----~~CP~CR~~i--~~~i~vy~ 422 (422)
.+...||||+....+ .++ -.|-+||..|+-.. ..||+-..+. +..+|+|+
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~~ 355 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLIRLFN 355 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHHHHHhc
Confidence 455799999999888 444 77999999999853 7899866554 45566653
No 103
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=0.018 Score=60.95 Aligned_cols=44 Identities=30% Similarity=0.696 Sum_probs=33.6
Q ss_pred CcCCcccccccccc-----------------c-ccccCCCccchhhhhcC----C-CCCCccccccC
Q 042398 373 AETQACPICLTNAK-----------------D-LAFGCGHMTCRECGSRV----S-NCPICRQRITN 416 (422)
Q Consensus 373 ~e~~~CpIC~~~~~-----------------~-v~l~CGH~fC~~Ci~~~----~-~CP~CR~~i~~ 416 (422)
+....|+||+.... + ++.||.|.|...|+.+| + .||+||.++..
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 44568999996321 1 34499999999999976 3 79999998753
No 104
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=94.03 E-value=0.35 Score=55.22 Aligned_cols=141 Identities=14% Similarity=0.171 Sum_probs=83.8
Q ss_pred ceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHH-hccccccCCCCCcceeeecCCCCCCCCCcccCCCCCCC
Q 042398 101 LILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITII-GKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHTPC 179 (422)
Q Consensus 101 l~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~i-g~il~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~~~ 179 (422)
+++.||-|+|+... + ..+.-.+|+... ..++ ..+-.+-++.|+...... ..+.+-.
T Consensus 307 VVLVLDvSGSM~g~-------d-------RL~~lkqAA~~fL~~~l---~~~DrVGLVtFsssA~vl---~pLt~It--- 363 (863)
T TIGR00868 307 VCLVLDKSGSMTVE-------D-------RLKRMNQAAKLFLLQTV---EKGSWVGMVTFDSAAYIK---NELIQIT--- 363 (863)
T ss_pred EEEEEECCcccccc-------C-------HHHHHHHHHHHHHHHhC---CCCCEEEEEEECCceeEe---eccccCC---
Confidence 77899999999521 0 234445565543 3343 445589999999864321 2222211
Q ss_pred CCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcCC--ceEEEEEEeCCcccccCCCCCCCCchhHHHHHHHHHH
Q 042398 180 HGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSGG--QYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVA 257 (422)
Q Consensus 180 ~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~~--~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~ 257 (422)
. ....++-...++ ....|-|++..-|..|.+..++... .=-.+++||||+-++ ..+..+ +
T Consensus 364 -s-~~dr~aL~~~L~-~~A~GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGedn~------------~~~~l~---~ 425 (863)
T TIGR00868 364 -S-SAERDALTANLP-TAASGGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGEDNT------------ISSCFE---E 425 (863)
T ss_pred -c-HHHHHHHHHhhc-cccCCCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCCCCC------------HHHHHH---H
Confidence 1 122333333444 3467889999999999988776421 123567789998654 223333 3
Q ss_pred hcCCCeeEEEEecCCCCcccccccc
Q 042398 258 ASSYPLSIVLVGVGDGPWEDMQKFD 282 (422)
Q Consensus 258 AS~~PlSIiiVGVG~~~f~~m~~LD 282 (422)
+....+.|-.||+|...=..|++|=
T Consensus 426 lk~~gVtI~TIg~G~dad~~L~~IA 450 (863)
T TIGR00868 426 VKQSGAIIHTIALGPSAAKELEELS 450 (863)
T ss_pred HHHcCCEEEEEEeCCChHHHHHHHH
Confidence 4445788888999976544455443
No 105
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=93.77 E-value=0.018 Score=61.39 Aligned_cols=44 Identities=27% Similarity=0.702 Sum_probs=37.0
Q ss_pred CCcCCccccccccccc-ccccCCCccchhhhhcC---------CCCCCcccccc
Q 042398 372 VAETQACPICLTNAKD-LAFGCGHMTCRECGSRV---------SNCPICRQRIT 415 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~---------~~CP~CR~~i~ 415 (422)
..++..|.+|.+...+ +...|.|.||..|+... ..||.|...++
T Consensus 533 nk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred ccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 4566899999999999 67799999999999742 68999987764
No 106
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.41 E-value=0.032 Score=55.77 Aligned_cols=37 Identities=32% Similarity=0.886 Sum_probs=32.0
Q ss_pred Cccccccccccc-ccc-cCCCccchhhhhcC-----CCCCCccc
Q 042398 376 QACPICLTNAKD-LAF-GCGHMTCRECGSRV-----SNCPICRQ 412 (422)
Q Consensus 376 ~~CpIC~~~~~~-v~l-~CGH~fC~~Ci~~~-----~~CP~CR~ 412 (422)
+.|+.|...+.+ +.. .|+|.||.+|+... ..||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 689999999999 555 78999999999942 78999976
No 107
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.38 E-value=0.035 Score=41.18 Aligned_cols=37 Identities=32% Similarity=0.941 Sum_probs=17.8
Q ss_pred cccccccccc--cc-c--cCCCccchhhhhcC-----CCCCCccccc
Q 042398 378 CPICLTNAKD--LA-F--GCGHMTCRECGSRV-----SNCPICRQRI 414 (422)
Q Consensus 378 CpIC~~~~~~--v~-l--~CGH~fC~~Ci~~~-----~~CP~CR~~i 414 (422)
||+|.+.+.. .. + +||+.+|..|..+. ..||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7889888733 33 3 67899999997743 5799999874
No 108
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.86 E-value=0.05 Score=53.75 Aligned_cols=43 Identities=19% Similarity=0.600 Sum_probs=34.1
Q ss_pred CcCCccccccccccc-----------ccccCCCccchhhhhcC------CCCCCcccccc
Q 042398 373 AETQACPICLTNAKD-----------LAFGCGHMTCRECGSRV------SNCPICRQRIT 415 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~-----------v~l~CGH~fC~~Ci~~~------~~CP~CR~~i~ 415 (422)
.++..|.||-..+.. -.+.|+|+|...|+..| ..||-|++.+.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 345689999875543 24699999999999965 68999998875
No 109
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.06 E-value=0.063 Score=54.59 Aligned_cols=44 Identities=30% Similarity=0.828 Sum_probs=32.6
Q ss_pred CcCCccccccccccc---ccc--cCCCccchhhhhcC-----CCCCCccccccC
Q 042398 373 AETQACPICLTNAKD---LAF--GCGHMTCRECGSRV-----SNCPICRQRITN 416 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~---v~l--~CGH~fC~~Ci~~~-----~~CP~CR~~i~~ 416 (422)
.|+..||.|++.... -.+ +||...|.-|.... ..||.||...+.
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 344569999987654 233 77888899998754 589999998753
No 110
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=91.84 E-value=0.047 Score=43.37 Aligned_cols=43 Identities=28% Similarity=0.556 Sum_probs=21.0
Q ss_pred CCcccccccccc-c---ccc-----cCCCccchhhhhcC---------------CCCCCccccccCc
Q 042398 375 TQACPICLTNAK-D---LAF-----GCGHMTCRECGSRV---------------SNCPICRQRITNR 417 (422)
Q Consensus 375 ~~~CpIC~~~~~-~---v~l-----~CGH~fC~~Ci~~~---------------~~CP~CR~~i~~~ 417 (422)
+..|+||+.... + ..+ .|++.|+..|+..| ..||.|+.+|+-.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 468999998765 2 112 68888999999865 2499999998643
No 111
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.30 E-value=0.083 Score=59.80 Aligned_cols=45 Identities=29% Similarity=0.597 Sum_probs=34.3
Q ss_pred CCcCCccccccccccc--cc------ccCCCccchhhhhcC------CCCCCccccccC
Q 042398 372 VAETQACPICLTNAKD--LA------FGCGHMTCRECGSRV------SNCPICRQRITN 416 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~--v~------l~CGH~fC~~Ci~~~------~~CP~CR~~i~~ 416 (422)
.....+|+||+....- -. -.|.|.|+..|+-+| ..||+||..|+-
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 3455799999987652 12 257899999999987 679999987753
No 112
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=90.02 E-value=0.13 Score=42.91 Aligned_cols=31 Identities=29% Similarity=0.735 Sum_probs=25.4
Q ss_pred CcCCccccccccccc---ccccCCCccchhhhhc
Q 042398 373 AETQACPICLTNAKD---LAFGCGHMTCRECGSR 403 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~---v~l~CGH~fC~~Ci~~ 403 (422)
.+...|++|...+.+ +++||||.++..|+.+
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEecccccC
Confidence 445689999999887 4669999999999753
No 113
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=89.28 E-value=0.12 Score=57.70 Aligned_cols=40 Identities=33% Similarity=0.845 Sum_probs=32.5
Q ss_pred Cccccccccccc-ccccCCCccchhhhhcC------CCCCCccccccC
Q 042398 376 QACPICLTNAKD-LAFGCGHMTCRECGSRV------SNCPICRQRITN 416 (422)
Q Consensus 376 ~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~------~~CP~CR~~i~~ 416 (422)
..|.+|.+ ... +...|||.+|..|+... ..||.||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 79999999 444 45599999999999854 469999987754
No 114
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.18 E-value=0.084 Score=42.85 Aligned_cols=39 Identities=33% Similarity=0.732 Sum_probs=27.5
Q ss_pred ccccccccccc--ccc-cCCCccchhhhhcC-------CCCCCcccccc
Q 042398 377 ACPICLTNAKD--LAF-GCGHMTCRECGSRV-------SNCPICRQRIT 415 (422)
Q Consensus 377 ~CpIC~~~~~~--v~l-~CGH~fC~~Ci~~~-------~~CP~CR~~i~ 415 (422)
.||-|.-.-.+ .++ .|.|.|...|+.++ ..||+||+..+
T Consensus 33 ~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 33 CCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 44444443344 234 89999999999975 47999998754
No 115
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=88.87 E-value=0.13 Score=39.40 Aligned_cols=37 Identities=30% Similarity=0.551 Sum_probs=24.2
Q ss_pred CcCCcccccccccccc-c-ccCCCccchhhhhcC------CCCCC
Q 042398 373 AETQACPICLTNAKDL-A-FGCGHMTCRECGSRV------SNCPI 409 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~v-~-l~CGH~fC~~Ci~~~------~~CP~ 409 (422)
.-...|||.+..+.+. . ..|||.|..+.+..+ ..||+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 3457999999999994 3 499999999998854 46887
No 116
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=88.86 E-value=0.16 Score=51.23 Aligned_cols=41 Identities=27% Similarity=0.651 Sum_probs=30.6
Q ss_pred Cccccccccccc--ccccCCCccchhhhhcC--CCCCCccccccC
Q 042398 376 QACPICLTNAKD--LAFGCGHMTCRECGSRV--SNCPICRQRITN 416 (422)
Q Consensus 376 ~~CpIC~~~~~~--v~l~CGH~fC~~Ci~~~--~~CP~CR~~i~~ 416 (422)
..|.-|---.+. -.++|.|+||.+|...- +.||.|-.++.+
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQR 135 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHHH
Confidence 456667554444 35699999999999854 699999877654
No 117
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.64 E-value=0.14 Score=53.34 Aligned_cols=30 Identities=23% Similarity=0.666 Sum_probs=25.1
Q ss_pred cCCccccccccccc---c-cccCCCccchhhhhc
Q 042398 374 ETQACPICLTNAKD---L-AFGCGHMTCRECGSR 403 (422)
Q Consensus 374 e~~~CpIC~~~~~~---v-~l~CGH~fC~~Ci~~ 403 (422)
....|.||++...- + .+||+|+||..|+..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kd 216 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKD 216 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHH
Confidence 44799999998876 3 459999999999984
No 118
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.78 E-value=0.24 Score=55.73 Aligned_cols=44 Identities=23% Similarity=0.576 Sum_probs=35.3
Q ss_pred CCccccccccccc--ccccCCCccchhhhhc-CCCCCCccccccCcc
Q 042398 375 TQACPICLTNAKD--LAFGCGHMTCRECGSR-VSNCPICRQRITNRL 418 (422)
Q Consensus 375 ~~~CpIC~~~~~~--v~l~CGH~fC~~Ci~~-~~~CP~CR~~i~~~i 418 (422)
...|..|-..+.- |.+.|||.|+..|+.+ ...||.|+......+
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e~~~~~CP~C~~e~~~~m 886 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLEDKEDKCPKCLPELRGVM 886 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhccCcccCCccchhhhhhH
Confidence 3689999988776 5669999999999994 478999998655443
No 119
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=83.92 E-value=0.48 Score=38.85 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=22.0
Q ss_pred cCCCccchhhhhcC----CCCCCcccccc
Q 042398 391 GCGHMTCRECGSRV----SNCPICRQRIT 415 (422)
Q Consensus 391 ~CGH~fC~~Ci~~~----~~CP~CR~~i~ 415 (422)
-|.|.|...|+.++ ..||+||++..
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 89999999999987 57999998753
No 120
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=83.03 E-value=0.21 Score=50.14 Aligned_cols=40 Identities=35% Similarity=0.777 Sum_probs=31.8
Q ss_pred Cccccccccccc----ccccCCCccchhhhhcC---------------------------CCCCCcccccc
Q 042398 376 QACPICLTNAKD----LAFGCGHMTCRECGSRV---------------------------SNCPICRQRIT 415 (422)
Q Consensus 376 ~~CpIC~~~~~~----v~l~CGH~fC~~Ci~~~---------------------------~~CP~CR~~i~ 415 (422)
-.|.||+--+.+ .+++|-|.+.+.|+.+. ..||+||..|.
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 479999987776 35599999999997742 35999999885
No 121
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=81.86 E-value=0.64 Score=34.40 Aligned_cols=35 Identities=31% Similarity=0.777 Sum_probs=25.2
Q ss_pred ccccccccccc---ccccCC-----CccchhhhhcC------CCCCCcc
Q 042398 377 ACPICLTNAKD---LAFGCG-----HMTCRECGSRV------SNCPICR 411 (422)
Q Consensus 377 ~CpIC~~~~~~---v~l~CG-----H~fC~~Ci~~~------~~CP~CR 411 (422)
.|.||++...+ ...||. |.+...|+.+| ..||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 48899983222 345884 67899999976 4799994
No 122
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.05 E-value=1.1 Score=44.92 Aligned_cols=30 Identities=27% Similarity=0.741 Sum_probs=25.4
Q ss_pred CcCCcccccccccccccc-cC----CCccchhhhh
Q 042398 373 AETQACPICLTNAKDLAF-GC----GHMTCRECGS 402 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~v~l-~C----GH~fC~~Ci~ 402 (422)
...+.|.+|.+.+.|..| .| .|.||.-|-.
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSR 300 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSR 300 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCH
Confidence 445899999999999766 88 6889999976
No 123
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=80.29 E-value=3 Score=39.68 Aligned_cols=143 Identities=19% Similarity=0.287 Sum_probs=78.1
Q ss_pred cceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccC-CCCCcceeeecCCC---CCCCCCcccCCC
Q 042398 100 NLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFD-EDNLIPCFGFGDAT---THDQEVFSFHDD 175 (422)
Q Consensus 100 nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD-~D~~ip~~GFGa~~---~~~~~vf~~~~~ 175 (422)
-+.+-+|.+.|.- +.++|.++. -.|.-|+.+-+ .+|- .--.+-+.-||... .+..++-||+|
T Consensus 5 P~~lllDtSgSM~--------Ge~IealN~---Glq~m~~~Lkq--dp~Ale~v~lsIVTF~~~a~~~~pf~~~~nF~~- 70 (207)
T COG4245 5 PCYLLLDTSGSMI--------GEPIEALNA---GLQMMIDTLKQ--DPYALERVELSIVTFGGPARVIQPFTDAANFNP- 70 (207)
T ss_pred CEEEEEecCcccc--------cccHHHHHH---HHHHHHHHHHh--ChhhhheeEEEEEEecCcceEEechhhHhhcCC-
Confidence 4677899999983 567776542 12222222211 0110 11246667777532 12223334443
Q ss_pred CCCCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHc--------CCce-EEEEEEeCCcccccCCCCCCCCch
Q 042398 176 HTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKS--------GGQY-HVLVIIADGQVTRSVNTGDGELSS 246 (422)
Q Consensus 176 ~~~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~--------~~~Y-~VLlIiTDG~i~d~~~~~~~~~~~ 246 (422)
|.+...|-|...-.|+.+.+.+++. .+.| .+..+||||..+|- .
T Consensus 71 ------------------p~L~a~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD~--w------- 123 (207)
T COG4245 71 ------------------PILTAQGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTDD--W------- 123 (207)
T ss_pred ------------------CceecCCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcchH--H-------
Confidence 4455568898888999888776543 1334 34457799999981 1
Q ss_pred hHHHHHHHHHHhcCCCeeEEEEecCCCCccccccccC
Q 042398 247 QEQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFDD 283 (422)
Q Consensus 247 ~~~~T~~aIv~AS~~PlSIiiVGVG~~~f~~m~~LD~ 283 (422)
++..++..--+++.--+-+..||+-++|-..++++-+
T Consensus 124 ~~~~~~~~~~~~~~k~v~a~~~G~~~ad~~~L~qit~ 160 (207)
T COG4245 124 QAGAALVFQGERRAKSVAAFSVGVQGADNKTLNQITE 160 (207)
T ss_pred HhHHHHhhhcccccceEEEEEecccccccHHHHHHHH
Confidence 2333344444455555555555655567666666553
No 124
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=78.83 E-value=13 Score=36.93 Aligned_cols=153 Identities=14% Similarity=0.244 Sum_probs=92.8
Q ss_pred HHHHHHHhcCCccccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccc-cccCCCCCcceeeecCCCC
Q 042398 86 QVTAALRDSGLESSNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTL-APFDEDNLIPCFGFGDATT 164 (422)
Q Consensus 86 ~i~~~l~~~G~~~~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il-~~yD~D~~ip~~GFGa~~~ 164 (422)
.+....| .|=...-++++||-|+|+.-- | --+.|=-.+...| ..|-.-..+-+.+|=+..
T Consensus 67 Dlr~~~r-~~r~g~lvvfvVDASgSM~~~----------~-------Rm~aaKG~~~~lL~dAYq~RdkvavI~F~G~~- 127 (261)
T COG1240 67 DLREKIR-EGRAGNLIVFVVDASGSMAAR----------R-------RMAAAKGAALSLLRDAYQRRDKVAVIAFRGEK- 127 (261)
T ss_pred HHHHHHh-ccCcCCcEEEEEeCcccchhH----------H-------HHHHHHHHHHHHHHHHHHccceEEEEEecCCc-
Confidence 3443333 233333467899999999620 1 1122222222222 345555678888885431
Q ss_pred CCCCCcccCCCCCCCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcC----CceEEEEEEeCCcccccCCCC
Q 042398 165 HDQEVFSFHDDHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSG----GQYHVLVIIADGQVTRSVNTG 240 (422)
Q Consensus 165 ~~~~vf~~~~~~~~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~----~~Y~VLlIiTDG~i~d~~~~~ 240 (422)
.++ =+.| -..++.+ .+.|..+.-.|-|-.++-|..+.++..+.. ..-.++|+||||..++...
T Consensus 128 --A~l-ll~p----T~sv~~~----~~~L~~l~~GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~-- 194 (261)
T COG1240 128 --AEL-LLPP----TSSVELA----ERALERLPTGGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIP-- 194 (261)
T ss_pred --ceE-EeCC----cccHHHH----HHHHHhCCCCCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCC--
Confidence 122 1111 1233433 334556677899999999999998865542 3567888999999877321
Q ss_pred CCCCchhHHHHHHHHHHhcCCCeeEEEEecCCCC
Q 042398 241 DGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGP 274 (422)
Q Consensus 241 ~~~~~~~~~~T~~aIv~AS~~PlSIiiVGVG~~~ 274 (422)
..| +.+|.++-..+...++=+++|......
T Consensus 195 ---~~~-~~e~~~~a~~~~~~g~~~lvid~e~~~ 224 (261)
T COG1240 195 ---LGP-KAETLEAASKLRLRGIQLLVIDTEGSE 224 (261)
T ss_pred ---Cch-HHHHHHHHHHHhhcCCcEEEEecCCcc
Confidence 112 678888888888888888888887765
No 125
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=78.43 E-value=1.8 Score=44.82 Aligned_cols=23 Identities=35% Similarity=0.800 Sum_probs=16.8
Q ss_pred CccchhhhhcC-----------------CCCCCccccccC
Q 042398 394 HMTCRECGSRV-----------------SNCPICRQRITN 416 (422)
Q Consensus 394 H~fC~~Ci~~~-----------------~~CP~CR~~i~~ 416 (422)
-+-|.+|+.++ ..||+||+.+.-
T Consensus 313 PmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 313 PMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred chHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 33477887754 369999998763
No 126
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=76.22 E-value=1.2 Score=40.00 Aligned_cols=43 Identities=23% Similarity=0.716 Sum_probs=33.8
Q ss_pred CCcccccccccccc-cc----cCCCccchhhhhcC-------CCCCCccccccCc
Q 042398 375 TQACPICLTNAKDL-AF----GCGHMTCRECGSRV-------SNCPICRQRITNR 417 (422)
Q Consensus 375 ~~~CpIC~~~~~~v-~l----~CGH~fC~~Ci~~~-------~~CP~CR~~i~~~ 417 (422)
-.+|.||.+...+- .+ -||-..|.-|...+ ..||+|+..+.+.
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 36899999998883 23 58999999997743 6899999988653
No 127
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.02 E-value=0.88 Score=51.62 Aligned_cols=31 Identities=26% Similarity=0.524 Sum_probs=25.9
Q ss_pred CCcCCccccccccccc---ccccCCCccchhhhh
Q 042398 372 VAETQACPICLTNAKD---LAFGCGHMTCRECGS 402 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~---v~l~CGH~fC~~Ci~ 402 (422)
.+-+..|-+|...+-. ++++|||.|.+.|+.
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~ 847 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLI 847 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHH
Confidence 4456799999987766 577999999999988
No 128
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=75.35 E-value=1 Score=53.57 Aligned_cols=45 Identities=31% Similarity=0.794 Sum_probs=34.3
Q ss_pred CCcCCccccccccccc----ccccCCCccchhhhhc-----C---------CCCCCccccccC
Q 042398 372 VAETQACPICLTNAKD----LAFGCGHMTCRECGSR-----V---------SNCPICRQRITN 416 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~----v~l~CGH~fC~~Ci~~-----~---------~~CP~CR~~i~~ 416 (422)
...+..|-||+...-. +.+.|+|.|...|..+ | -.||+|..+|..
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 3456799999976544 4569999998888773 2 479999998864
No 129
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=73.70 E-value=9.6 Score=40.64 Aligned_cols=97 Identities=18% Similarity=0.241 Sum_probs=59.8
Q ss_pred CCCcceeeecCCCCCCCCCcccCCCCCCCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcC-CceEEEEEEe
Q 042398 151 DNLIPCFGFGDATTHDQEVFSFHDDHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSG-GQYHVLVIIA 229 (422)
Q Consensus 151 D~~ip~~GFGa~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~-~~Y~VLlIiT 229 (422)
++.+-++-|-.. ..+..+ .+...|++++++- +..+ +.|-|+|...|..|++..++.. .+| =||+||
T Consensus 308 nR~~~~~lF~s~-~~~~el------~~k~~~~~e~i~f----L~~~-f~GGTD~~~~l~~al~~~k~~~~~~a-div~IT 374 (437)
T COG2425 308 NRDCYVILFDSE-VIEYEL------YEKKIDIEELIEF----LSYV-FGGGTDITKALRSALEDLKSRELFKA-DIVVIT 374 (437)
T ss_pred ccceEEEEeccc-ceeeee------cCCccCHHHHHHH----Hhhh-cCCCCChHHHHHHHHHHhhcccccCC-CEEEEe
Confidence 344666666551 111112 3455789999873 3333 3344999999999999988643 234 458889
Q ss_pred CCcccccCCCCCCCCchhHHHHHHHHHHhcCCCeeEEEEe
Q 042398 230 DGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVG 269 (422)
Q Consensus 230 DG~i~d~~~~~~~~~~~~~~~T~~aIv~AS~~PlSIiiVG 269 (422)
||.-.-. .+....++.+.++++.=+--|+||
T Consensus 375 Dg~~~~~---------~~~~~~v~e~~k~~~~rl~aV~I~ 405 (437)
T COG2425 375 DGEDERL---------DDFLRKVKELKKRRNARLHAVLIG 405 (437)
T ss_pred ccHhhhh---------hHHHHHHHHHHHHhhceEEEEEec
Confidence 9964321 124677777777777666555544
No 130
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=72.71 E-value=0.87 Score=47.41 Aligned_cols=43 Identities=23% Similarity=0.539 Sum_probs=33.3
Q ss_pred CcCCccccccccccc-----ccccCCCccchhhhhcC------CCCCCcccccc
Q 042398 373 AETQACPICLTNAKD-----LAFGCGHMTCRECGSRV------SNCPICRQRIT 415 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~-----v~l~CGH~fC~~Ci~~~------~~CP~CR~~i~ 415 (422)
+.++.|..|-+..-. ..+||.|.|..+|+... ..||.||+-+.
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 345799999886533 47799999999999832 78999995443
No 131
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=72.38 E-value=9.9 Score=41.44 Aligned_cols=167 Identities=12% Similarity=0.168 Sum_probs=99.0
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCC---CCHHHHHHHHHhccccccCCCCCcceeeecCCCCC---CCCCccc
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDT---PNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTH---DQEVFSF 172 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~---~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~---~~~vf~~ 172 (422)
+-|++-||.|+|... +++++ .--..+|+..++.-++.--+- ...|+|-.+..+ -+.|-+|
T Consensus 447 la~TLLvD~S~St~a------------~mdetrRvidl~~eaL~~la~~~qa~gd~--~~~~~fts~rr~~vri~tvk~F 512 (637)
T COG4548 447 LAFTLLVDVSASTDA------------KMDETRRVIDLFHEALLVLAHGHQALGDS--EDILDFTSRRRPWVRINTVKDF 512 (637)
T ss_pred ceeEEEeecccchHH------------HhhhhhhhHHHHHHHHHHhhchhhhhCCH--HHhcCchhhcCcceeeeeeecc
Confidence 447889999999852 33332 345667777776655544322 344556544221 1223233
Q ss_pred CCCCCCCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcCCceEEEEEEeCCcccccCCCCCCCCchhHHHHH
Q 042398 173 HDDHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTI 252 (422)
Q Consensus 173 ~~~~~~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~ 252 (422)
. .+.-..++. .+-.+...--|--...|++|.+..-...+.=-.|+++|||..+|.. --.|+. -.+.|.
T Consensus 513 D--es~~~~~~~-------RImALePg~ytR~G~AIR~As~kL~~rpq~qklLivlSDGkPnd~d-~YEgr~--gIeDTr 580 (637)
T COG4548 513 D--ESMGETVGP-------RIMALEPGYYTRDGAAIRHASAKLMERPQRQKLLIVLSDGKPNDFD-HYEGRF--GIEDTR 580 (637)
T ss_pred c--cccccccch-------hheecCccccccccHHHHHHHHHHhcCcccceEEEEecCCCccccc-cccccc--chhhHH
Confidence 2 111111111 1222333344677888999987655545556788999999999842 122222 357999
Q ss_pred HHHHHhcCCCeeEEEEecCCCCccccccccCCCCCcccccceecc
Q 042398 253 KSIVAASSYPLSIVLVGVGDGPWEDMQKFDDKIPAREFDNFQFVN 297 (422)
Q Consensus 253 ~aIv~AS~~PlSIiiVGVG~~~f~~m~~LD~~~~~r~rDnvqFV~ 297 (422)
+|+.+|-+.-|+++-|=|-...-+.+..+-+ .|..-||+
T Consensus 581 ~AV~eaRk~Gi~VF~Vtld~ea~~y~p~~fg------qngYa~V~ 619 (637)
T COG4548 581 EAVIEARKSGIEVFNVTLDREAISYLPALFG------QNGYAFVE 619 (637)
T ss_pred HHHHHHHhcCceEEEEEecchhhhhhHHHhc------cCceEEcc
Confidence 9999999999999998887765544443332 26666775
No 132
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.34 E-value=1.5 Score=45.73 Aligned_cols=42 Identities=24% Similarity=0.622 Sum_probs=32.9
Q ss_pred CcCCccccccccccc----ccccCCCccchhhhhcC-------CCCCCccccc
Q 042398 373 AETQACPICLTNAKD----LAFGCGHMTCRECGSRV-------SNCPICRQRI 414 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~----v~l~CGH~fC~~Ci~~~-------~~CP~CR~~i 414 (422)
...+.|||=.+.-.+ +.+.|||+.|.+-+.++ .+||.|-...
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred cceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 445789997776655 67899999999998865 5799997654
No 133
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=71.35 E-value=1.5 Score=32.58 Aligned_cols=43 Identities=28% Similarity=0.777 Sum_probs=22.0
Q ss_pred CcccccccccccccccCC-CccchhhhhcC----CCCCCccccccCccc
Q 042398 376 QACPICLTNAKDLAFGCG-HMTCRECGSRV----SNCPICRQRITNRLR 419 (422)
Q Consensus 376 ~~CpIC~~~~~~v~l~CG-H~fC~~Ci~~~----~~CP~CR~~i~~~i~ 419 (422)
..|.-|+-..+. .+.|. |-.|..|+..+ ..||+|..++.++++
T Consensus 3 ~nCKsCWf~~k~-Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtkir 50 (50)
T PF03854_consen 3 YNCKSCWFANKG-LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKIR 50 (50)
T ss_dssp ----SS-S--SS-EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----S-
T ss_pred ccChhhhhcCCC-eeeecchhHHHHHHHHHhccccCCCcccCcCccccC
Confidence 357777754443 34676 66699999965 579999999988764
No 134
>PHA03096 p28-like protein; Provisional
Probab=70.47 E-value=1.6 Score=43.88 Aligned_cols=29 Identities=28% Similarity=0.295 Sum_probs=23.2
Q ss_pred Cccccccccccc--------ccc-cCCCccchhhhhcC
Q 042398 376 QACPICLTNAKD--------LAF-GCGHMTCRECGSRV 404 (422)
Q Consensus 376 ~~CpIC~~~~~~--------v~l-~CGH~fC~~Ci~~~ 404 (422)
..|.||++.... -.+ .|-|.||..|+..|
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~w 216 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIW 216 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHH
Confidence 579999987653 234 89999999999965
No 135
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.05 E-value=2.1 Score=41.63 Aligned_cols=41 Identities=27% Similarity=0.566 Sum_probs=32.9
Q ss_pred Cccccccccccc---ccccCCCccchhhhhcC------------CCCCCccccccC
Q 042398 376 QACPICLTNAKD---LAFGCGHMTCRECGSRV------------SNCPICRQRITN 416 (422)
Q Consensus 376 ~~CpIC~~~~~~---v~l~CGH~fC~~Ci~~~------------~~CP~CR~~i~~ 416 (422)
..|..|-..+.. +.+-|-|.|.++|+... ..||.|..+|-.
T Consensus 51 pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 478889887776 56799999999999843 479999988743
No 136
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=67.54 E-value=1.7 Score=48.39 Aligned_cols=44 Identities=27% Similarity=0.794 Sum_probs=36.0
Q ss_pred CCcCCccccccccccc-ccccCCCccchhhhhcC-------CCCCCcccccc
Q 042398 372 VAETQACPICLTNAKD-LAFGCGHMTCRECGSRV-------SNCPICRQRIT 415 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~-------~~CP~CR~~i~ 415 (422)
....+.|+||...... +.+.|-|.||.-|+... ..||+|+..+.
T Consensus 18 ~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 18 MQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred HhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 3456799999999998 57799999999998843 57999996654
No 137
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=65.90 E-value=1.3 Score=52.06 Aligned_cols=41 Identities=37% Similarity=0.849 Sum_probs=34.1
Q ss_pred CcCCccccccccccc--ccccCCCccchhhhhcC----CCCCCcccc
Q 042398 373 AETQACPICLTNAKD--LAFGCGHMTCRECGSRV----SNCPICRQR 413 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~--v~l~CGH~fC~~Ci~~~----~~CP~CR~~ 413 (422)
.+...|.||.+...+ ....|||.+|+.|...+ ..||+|...
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 344599999999997 56799999999999865 689999754
No 138
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=65.14 E-value=27 Score=33.99 Aligned_cols=51 Identities=20% Similarity=0.407 Sum_probs=31.2
Q ss_pred CceEEEEEEeCCcccccCCCC---CCCCchhHHHHHHHHHHhcCCCeeEEEEecCC
Q 042398 220 GQYHVLVIIADGQVTRSVNTG---DGELSSQEQKTIKSIVAASSYPLSIVLVGVGD 272 (422)
Q Consensus 220 ~~Y~VLlIiTDG~i~d~~~~~---~~~~~~~~~~T~~aIv~AS~~PlSIiiVGVG~ 272 (422)
.+=-||++|+||...|..-.. ..-|..+++++++.|... -++-++-||||.
T Consensus 134 e~rkiLiViSDG~P~d~st~~~n~~~~L~~HLr~vi~~ie~~--~~Vel~aiGIg~ 187 (219)
T PF11775_consen 134 EQRKILIVISDGAPADDSTLSANDGDYLDAHLRQVIAEIETR--SDVELIAIGIGH 187 (219)
T ss_pred ccceEEEEEeCCCcCcccccccCChHHHHHHHHHHHHHHhcc--CCcEEEEEEcCC
Confidence 345699999999998732111 113434445555554433 467788888886
No 139
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=62.31 E-value=1.9 Score=34.57 Aligned_cols=37 Identities=30% Similarity=0.759 Sum_probs=17.6
Q ss_pred CcccccccccccccccCCCccchhhhhcC---CCCCCcccccc
Q 042398 376 QACPICLTNAKDLAFGCGHMTCRECGSRV---SNCPICRQRIT 415 (422)
Q Consensus 376 ~~CpIC~~~~~~v~l~CGH~fC~~Ci~~~---~~CP~CR~~i~ 415 (422)
..||.|...+...- +|..|..|.... ..||-|..++.
T Consensus 2 ~~CP~C~~~L~~~~---~~~~C~~C~~~~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG---GHYHCEACQKDYKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET---TEEEETTT--EEEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC---CEEECccccccceecccCCCcccHHH
Confidence 57999988765522 555566666643 35666666553
No 140
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=61.90 E-value=1.1e+02 Score=28.80 Aligned_cols=149 Identities=12% Similarity=0.129 Sum_probs=76.3
Q ss_pred ceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccc---cCCCCCcceeeecCCCCCC-------CCCc
Q 042398 101 LILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAP---FDEDNLIPCFGFGDATTHD-------QEVF 170 (422)
Q Consensus 101 l~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~---yD~D~~ip~~GFGa~~~~~-------~~vf 170 (422)
+++.||.+.|...+ +-.... +.+.|++.|-.+++. ....-.+-++.||...+.. .+++
T Consensus 2 ~vflID~s~sM~~~-----------~~~~~~-~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~ 69 (224)
T PF03731_consen 2 TVFLIDVSPSMFEP-----------SSESES-PLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIF 69 (224)
T ss_dssp EEEEEE-SCGGGS------------BTTCS--HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEE
T ss_pred EEEEEECCHHHCCC-----------CCCcch-hHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceE
Confidence 57899999998632 111112 888999888887764 2333579999999876543 3455
Q ss_pred ccCCCCCCCCCHHHHHHHHHhhCCc----cc---ccCCCChHHHHHHHHHHHHH--cCCc--eEEEEEEeCCcccccCCC
Q 042398 171 SFHDDHTPCHGFEEVLACYRNIVPN----LR---LAGPTSYAPVVEAAMDIVEK--SGGQ--YHVLVIIADGQVTRSVNT 239 (422)
Q Consensus 171 ~~~~~~~~~~G~~gvl~~Y~~~l~~----v~---l~GPT~fapiI~~a~~~~~~--~~~~--Y~VLlIiTDG~i~d~~~~ 239 (422)
.+.+=++ .+++.+.+.- +.+.. -. -.....+..++-.+..+..+ ...+ .--+++|||+.--.
T Consensus 70 ~l~~l~~--~~~~~l~~L~-~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~p~---- 142 (224)
T PF03731_consen 70 VLQPLDP--PSAERLKELE-ELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDGPH---- 142 (224)
T ss_dssp EEEECC----BHHHHHHHH-TTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SSTT----
T ss_pred EeecCCc--cCHHHHHHHH-HhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCC----
Confidence 5543221 1333332211 11111 00 12334677777777776553 2222 24557789875322
Q ss_pred CCCCCchhHHHHHHH--HHHhcCCCeeEEEEecC
Q 042398 240 GDGELSSQEQKTIKS--IVAASSYPLSIVLVGVG 271 (422)
Q Consensus 240 ~~~~~~~~~~~T~~a--Iv~AS~~PlSIiiVGVG 271 (422)
+ -..+.+.+++. ..+....-+.+.++.+.
T Consensus 143 --~-~~~~~~~~~~~l~~~Dl~~~~i~~~~~~l~ 173 (224)
T PF03731_consen 143 --E-DDDELERIIQKLKAKDLQDNGIEIELFFLP 173 (224)
T ss_dssp --T--CCCHHHHHHHHHHHHHHHHTEEEEEEECT
T ss_pred --C-CHHHHHHHHHhhccccchhcCcceeEeecC
Confidence 1 01125566666 66677778888888873
No 141
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=59.20 E-value=2.6 Score=42.21 Aligned_cols=41 Identities=29% Similarity=0.640 Sum_probs=31.6
Q ss_pred ccccccccccc-----ccccCCCccchhhhhcC----CCCCCccccccCcc
Q 042398 377 ACPICLTNAKD-----LAFGCGHMTCRECGSRV----SNCPICRQRITNRL 418 (422)
Q Consensus 377 ~CpIC~~~~~~-----v~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~~i 418 (422)
.||||.+.... .+++|||....+|.... -.||+|.. +....
T Consensus 160 ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d~~ 209 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK-PGDMS 209 (276)
T ss_pred CCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc-hHHHH
Confidence 49999998776 25699999888888844 67999988 54433
No 142
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.55 E-value=4.4 Score=42.39 Aligned_cols=30 Identities=27% Similarity=0.864 Sum_probs=22.3
Q ss_pred cCCcccccc-ccccc----ccccCCCccchhhhhc
Q 042398 374 ETQACPICL-TNAKD----LAFGCGHMTCRECGSR 403 (422)
Q Consensus 374 e~~~CpIC~-~~~~~----v~l~CGH~fC~~Ci~~ 403 (422)
....|.||+ +.... .+..|+|.||.+|..+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~ 179 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQ 179 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHH
Confidence 346899999 44333 2348999999999984
No 143
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=58.51 E-value=6.2 Score=36.48 Aligned_cols=43 Identities=21% Similarity=0.429 Sum_probs=31.6
Q ss_pred CcCCcccccccccccccccCCCc-----cchhhhhcC------CCCCCcccccc
Q 042398 373 AETQACPICLTNAKDLAFGCGHM-----TCRECGSRV------SNCPICRQRIT 415 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~v~l~CGH~-----fC~~Ci~~~------~~CP~CR~~i~ 415 (422)
..+..|-||++...+...||... .+.+|+.+| ..|++|+.++.
T Consensus 6 ~~~~~CRIC~~~~~~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYDVVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCCCccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 45679999998865433466432 488999876 67999998864
No 144
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=58.20 E-value=21 Score=36.56 Aligned_cols=43 Identities=28% Similarity=0.725 Sum_probs=32.5
Q ss_pred CCccccccccccc---ccc--cCCCccchhhhhcC----CCCCCccccccCc
Q 042398 375 TQACPICLTNAKD---LAF--GCGHMTCRECGSRV----SNCPICRQRITNR 417 (422)
Q Consensus 375 ~~~CpIC~~~~~~---v~l--~CGH~fC~~Ci~~~----~~CP~CR~~i~~~ 417 (422)
...|++|.+..-. ..+ +||+..|..|.... ..||.||.+....
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccccC
Confidence 3689999986632 344 77888999998854 6899999887654
No 145
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=55.84 E-value=3.4 Score=37.14 Aligned_cols=30 Identities=30% Similarity=0.712 Sum_probs=24.0
Q ss_pred CCccccccccccc----ccccCC------CccchhhhhcC
Q 042398 375 TQACPICLTNAKD----LAFGCG------HMTCRECGSRV 404 (422)
Q Consensus 375 ~~~CpIC~~~~~~----v~l~CG------H~fC~~Ci~~~ 404 (422)
..+|.||++...+ +.++|| |+||.+|+.+|
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw 65 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRW 65 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHH
Confidence 4689999998766 445887 55999999987
No 146
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=54.27 E-value=5.2 Score=30.94 Aligned_cols=35 Identities=29% Similarity=0.614 Sum_probs=19.1
Q ss_pred CCCCCCcCCcccccccccccc---c--ccCCCccchhhhh
Q 042398 368 GSTPVAETQACPICLTNAKDL---A--FGCGHMTCRECGS 402 (422)
Q Consensus 368 s~~~~~e~~~CpIC~~~~~~v---~--l~CGH~fC~~Ci~ 402 (422)
.|.+..+...|.+|...+.-. . -.||+.||..|..
T Consensus 2 ~W~~d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~ 41 (69)
T PF01363_consen 2 HWVPDSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSS 41 (69)
T ss_dssp -SSSGGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-
T ss_pred CcCCCCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhC
Confidence 345556778999999988542 1 2899999999977
No 147
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=54.26 E-value=9.5 Score=43.22 Aligned_cols=27 Identities=11% Similarity=0.267 Sum_probs=20.3
Q ss_pred cCCCccchhhhhcC----------CCCCCccccccCc
Q 042398 391 GCGHMTCRECGSRV----------SNCPICRQRITNR 417 (422)
Q Consensus 391 ~CGH~fC~~Ci~~~----------~~CP~CR~~i~~~ 417 (422)
.|+|.+|..|+..+ ..|+.|..-|...
T Consensus 120 ~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sW 156 (1134)
T KOG0825|consen 120 THVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSW 156 (1134)
T ss_pred hhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhh
Confidence 59999999999954 4578877655443
No 148
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=47.25 E-value=13 Score=38.01 Aligned_cols=47 Identities=6% Similarity=-0.040 Sum_probs=35.5
Q ss_pred cCCccccccccccc-ccccCCCc-cchhhhhcC--CCCCCccccccCcccc
Q 042398 374 ETQACPICLTNAKD-LAFGCGHM-TCRECGSRV--SNCPICRQRITNRLRL 420 (422)
Q Consensus 374 e~~~CpIC~~~~~~-v~l~CGH~-fC~~Ci~~~--~~CP~CR~~i~~~i~v 420 (422)
..+.|-+|-..... +..+|+|. ||.+|.... ..||+|.......+++
T Consensus 342 s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred hhcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeec
Confidence 34689999988877 44599998 699998843 6899998766554443
No 149
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=43.59 E-value=8.6 Score=33.16 Aligned_cols=23 Identities=30% Similarity=0.558 Sum_probs=20.2
Q ss_pred cCCCccchhhhhcC----CCCCCcccc
Q 042398 391 GCGHMTCRECGSRV----SNCPICRQR 413 (422)
Q Consensus 391 ~CGH~fC~~Ci~~~----~~CP~CR~~ 413 (422)
-|.|.|...|+.++ ..||+|.+.
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 79999999999976 579999775
No 150
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=43.46 E-value=11 Score=27.85 Aligned_cols=38 Identities=26% Similarity=0.663 Sum_probs=17.8
Q ss_pred Cccccccccccccc--ccCCCccchhhhh--------cCCCCCCcccc
Q 042398 376 QACPICLTNAKDLA--FGCGHMTCRECGS--------RVSNCPICRQR 413 (422)
Q Consensus 376 ~~CpIC~~~~~~v~--l~CGH~fC~~Ci~--------~~~~CP~CR~~ 413 (422)
+.||+........+ ..|.|.-|.+=.. ..-.||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 57999998888743 3899997654322 11369999864
No 151
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=43.05 E-value=90 Score=34.70 Aligned_cols=62 Identities=23% Similarity=0.340 Sum_probs=36.6
Q ss_pred HHHHHHHHHHcCCceEEEEEEeCCcccccCCC---CCC-CCchhHHHHHHHHHHhcCC-CeeEEEEecCCC
Q 042398 208 VEAAMDIVEKSGGQYHVLVIIADGQVTRSVNT---GDG-ELSSQEQKTIKSIVAASSY-PLSIVLVGVGDG 273 (422)
Q Consensus 208 I~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~---~~~-~~~~~~~~T~~aIv~AS~~-PlSIiiVGVG~~ 273 (422)
|..|.+...+...+=-|||+|+||+..|.. | ++| -| ++..++.|.....- |+=++=||||..
T Consensus 502 l~wa~~rL~~R~e~rKiL~ViSDG~P~D~~-TlsvN~~~~l---~~hLr~vi~~~e~~~~vel~aigIg~D 568 (600)
T TIGR01651 502 LMWAHQRLIARPEQRRILMMISDGAPVDDS-TLSVNPGNYL---ERHLRAVIEEIETRSPVELLAIGIGHD 568 (600)
T ss_pred HHHHHHHHhcCcccceEEEEEeCCCcCCcc-ccccCchhHH---HHHHHHHHHHHhccCCceEEEeecccc
Confidence 334443333344566899999999988721 1 111 22 23344455555554 888888999874
No 152
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=42.07 E-value=84 Score=32.48 Aligned_cols=114 Identities=18% Similarity=0.359 Sum_probs=68.8
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCCCcceeeecCCCCC------------C
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTH------------D 166 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~------------~ 166 (422)
=+|+|.||++...... -+ .+|-....|..+-.-+..|=+.|.|--.||=..... .
T Consensus 61 Rhl~iviD~S~am~e~--------Df-----~P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~k~g~A~~lt~ltgnp~ 127 (378)
T KOG2807|consen 61 RHLYIVIDCSRAMEEK--------DF-----RPSRFANVIKYLEGFVPEFFDQNPISQIGIISIKDGKADRLTDLTGNPR 127 (378)
T ss_pred eeEEEEEEhhhhhhhc--------cC-----CchHHHHHHHHHHHHHHHHhccCchhheeEEEEecchhhHHHHhcCCHH
Confidence 4899999999888531 11 257777777777765555555667777777422100 0
Q ss_pred CCCcccCCCCCCCCC---HHHHHHHHHhhCCccccc---------------CCCChHHHHHHHH----------------
Q 042398 167 QEVFSFHDDHTPCHG---FEEVLACYRNIVPNLRLA---------------GPTSYAPVVEAAM---------------- 212 (422)
Q Consensus 167 ~~vf~~~~~~~~~~G---~~gvl~~Y~~~l~~v~l~---------------GPT~fapiI~~a~---------------- 212 (422)
.++-.|.. -.+|.| ++..|+.-++.+.++--. -|.++...|....
T Consensus 128 ~hI~aL~~-~~~~~g~fSLqNaLe~a~~~Lk~~p~H~sREVLii~sslsT~DPgdi~~tI~~lk~~kIRvsvIgLsaEv~ 206 (378)
T KOG2807|consen 128 IHIHALKG-LTECSGDFSLQNALELAREVLKHMPGHVSREVLIIFSSLSTCDPGDIYETIDKLKAYKIRVSVIGLSAEVF 206 (378)
T ss_pred HHHHHHhc-ccccCCChHHHHHHHHHHHHhcCCCcccceEEEEEEeeecccCcccHHHHHHHHHhhCeEEEEEeechhHH
Confidence 11111111 114544 556666666666665322 4889999998654
Q ss_pred ---HHHHHcCCceEEEE
Q 042398 213 ---DIVEKSGGQYHVLV 226 (422)
Q Consensus 213 ---~~~~~~~~~Y~VLl 226 (422)
++++.++|.|+|+|
T Consensus 207 icK~l~kaT~G~Y~V~l 223 (378)
T KOG2807|consen 207 ICKELCKATGGRYSVAL 223 (378)
T ss_pred HHHHHHHhhCCeEEEEe
Confidence 24567889999965
No 153
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.20 E-value=15 Score=36.57 Aligned_cols=44 Identities=18% Similarity=0.410 Sum_probs=33.2
Q ss_pred CcCCccccccccccc----ccc-cCCCccchhhhhcC--CCCCCccccccC
Q 042398 373 AETQACPICLTNAKD----LAF-GCGHMTCRECGSRV--SNCPICRQRITN 416 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~----v~l-~CGH~fC~~Ci~~~--~~CP~CR~~i~~ 416 (422)
...+.|||---.+.. +.+ +|||+|-..-+... ..|++|.+.+..
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeikas~C~~C~a~y~~ 159 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKASVCHVCGAAYQE 159 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhhhccccccCCcccc
Confidence 445789987655544 344 99999988887755 689999998764
No 154
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.78 E-value=13 Score=35.02 Aligned_cols=45 Identities=29% Similarity=0.626 Sum_probs=33.6
Q ss_pred cCCccccccccccc------c--cccCCCccchhhhhcC---------------CCCCCccccccCcc
Q 042398 374 ETQACPICLTNAKD------L--AFGCGHMTCRECGSRV---------------SNCPICRQRITNRL 418 (422)
Q Consensus 374 e~~~CpIC~~~~~~------v--~l~CGH~fC~~Ci~~~---------------~~CP~CR~~i~~~i 418 (422)
+.-.|-||+.+.-+ + -..||..|..-|+..| ..||.|..++.-++
T Consensus 164 ~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKm 231 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKM 231 (234)
T ss_pred hhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeec
Confidence 44578999987655 1 2489988999998865 46999999986543
No 155
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=39.07 E-value=2.2e+02 Score=29.96 Aligned_cols=64 Identities=13% Similarity=0.181 Sum_probs=42.4
Q ss_pred ccccHHHHHHHHHhcCCcc-ccceeeeeccCCCCCCCCCCCCCCCcccC--CCCCCHHHHHHHHHhccccccC
Q 042398 80 TFSSLEQVTAALRDSGLES-SNLILGIDFTKSNEWTGKVSFNNRSLHAI--GDTPNPYEKAITIIGKTLAPFD 149 (422)
Q Consensus 80 ~~~~ld~i~~~l~~~G~~~-~nl~vaIDfT~SN~~~g~~~~~~~SLH~~--~~~~N~Y~~AI~~ig~il~~yD 149 (422)
.-.-|+.|.+|++++|++- -++.++||+-+|--|.+ ..-+|- .+..-..++||+.+.++++.|+
T Consensus 212 d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~------~~y~~~~~~~~~~t~~eai~~~~~l~e~~~ 278 (408)
T cd03313 212 NEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDE------GKYVYDSDEGKKLTSEELIDYYKELVKKYP 278 (408)
T ss_pred hHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhccc------CcceeccCCCcccCHHHHHHHHHHHHHhCC
Confidence 3345777999999999882 27999999998854311 112221 1122234888888888888776
No 156
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=38.34 E-value=20 Score=36.85 Aligned_cols=38 Identities=24% Similarity=0.715 Sum_probs=28.6
Q ss_pred CCccccccccccc-ccc---cCCCccchhhhh----cCCCCCCccc
Q 042398 375 TQACPICLTNAKD-LAF---GCGHMTCRECGS----RVSNCPICRQ 412 (422)
Q Consensus 375 ~~~CpIC~~~~~~-v~l---~CGH~fC~~Ci~----~~~~CP~CR~ 412 (422)
...|-.|.+.... ..+ .|.+.||.+|-. .+..||-|..
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred CcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 3459999777766 333 789999999976 4578999963
No 157
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=37.41 E-value=11 Score=39.55 Aligned_cols=42 Identities=29% Similarity=0.762 Sum_probs=0.0
Q ss_pred CCcccccccc--------------ccc-----ccc-cCCCccchhhhhcC-------------CCCCCccccccC
Q 042398 375 TQACPICLTN--------------AKD-----LAF-GCGHMTCRECGSRV-------------SNCPICRQRITN 416 (422)
Q Consensus 375 ~~~CpIC~~~--------------~~~-----v~l-~CGH~fC~~Ci~~~-------------~~CP~CR~~i~~ 416 (422)
...||+|+.. ..| -+| ||||++-.+...-| ..||.|-.++..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 5789999852 122 245 99998755554433 369999999864
No 158
>PLN00191 enolase
Probab=37.05 E-value=2.5e+02 Score=30.20 Aligned_cols=65 Identities=17% Similarity=0.325 Sum_probs=42.3
Q ss_pred ccccHHHHHHHHHhcCCccccceeeeeccCCCCCC-CCCCCCCCCcccCC-----CCCCHHHHHHHHHhccccccC
Q 042398 80 TFSSLEQVTAALRDSGLESSNLILGIDFTKSNEWT-GKVSFNNRSLHAIG-----DTPNPYEKAITIIGKTLAPFD 149 (422)
Q Consensus 80 ~~~~ld~i~~~l~~~G~~~~nl~vaIDfT~SN~~~-g~~~~~~~SLH~~~-----~~~N~Y~~AI~~ig~il~~yD 149 (422)
.-.-||.|.+|+.++|++ -++.+|||+-+|--|. +. .| .+.+-+ ...-..+++|..+-.++..|+
T Consensus 242 ~~eal~ll~eAi~~ag~~-~~i~i~lD~Aase~~~~~~-~Y---~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~ 312 (457)
T PLN00191 242 NKEGLELLKEAIEKAGYT-GKIKIGMDVAASEFYTKDK-KY---DLDFKEENNDGSNKKSGDELIDLYKEFVSDYP 312 (457)
T ss_pred HHHHHHHHHHHHHHcCCC-CceEEEeehhhhhhcccCC-ce---EeeccccCCCcccccCHHHHHHHHHHHhhcCC
Confidence 335688899999999998 5799999999985431 10 11 010000 111256888888888777665
No 159
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=37.00 E-value=20 Score=38.77 Aligned_cols=38 Identities=18% Similarity=0.538 Sum_probs=29.2
Q ss_pred CCCCCCCCCcCCcccccccccccc-----cccCCCccchhhhh
Q 042398 365 PSRGSTPVAETQACPICLTNAKDL-----AFGCGHMTCRECGS 402 (422)
Q Consensus 365 ~~~s~~~~~e~~~CpIC~~~~~~v-----~l~CGH~fC~~Ci~ 402 (422)
..++|.|-++...|-.|...+... ...||..||..|..
T Consensus 891 sppawipd~~a~~cmacq~pf~afrrrhhcrncggifcg~cs~ 933 (990)
T KOG1819|consen 891 SPPAWIPDEDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCSC 933 (990)
T ss_pred CCcccCCCCcchhhhhccCcHHHHHHhhhhcccCceeeccccc
Confidence 345677778888999998776552 33899999999966
No 160
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=36.43 E-value=15 Score=41.99 Aligned_cols=44 Identities=23% Similarity=0.521 Sum_probs=33.9
Q ss_pred CcCCccccccccccc--ccc---cCCCccchhhhhcC-----------CCCCCccccccC
Q 042398 373 AETQACPICLTNAKD--LAF---GCGHMTCRECGSRV-----------SNCPICRQRITN 416 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~--v~l---~CGH~fC~~Ci~~~-----------~~CP~CR~~i~~ 416 (422)
.+..+|-||++...- .++ .|-|+|...||.+| -.||.|+....+
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~ 248 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKT 248 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhcc
Confidence 345799999998877 344 56799999999977 369999865443
No 161
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=33.78 E-value=17 Score=36.67 Aligned_cols=49 Identities=22% Similarity=0.536 Sum_probs=33.9
Q ss_pred CCCCCCCCcCCccccccc-ccccc-----cccCCCccchhhhhcC-----------CCCCCccccc
Q 042398 366 SRGSTPVAETQACPICLT-NAKDL-----AFGCGHMTCRECGSRV-----------SNCPICRQRI 414 (422)
Q Consensus 366 ~~s~~~~~e~~~CpIC~~-~~~~v-----~l~CGH~fC~~Ci~~~-----------~~CP~CR~~i 414 (422)
++.|.|-.+...|.+|.- .+... .-.||+.||..|-... ..|+.|-..+
T Consensus 159 ~~~W~PD~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el 224 (288)
T KOG1729|consen 159 AAVWLPDSEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEEL 224 (288)
T ss_pred CCcccCcccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccCCCCceecHHHHHHH
Confidence 345666667789999998 44332 2389999999997741 3677775444
No 162
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=33.14 E-value=29 Score=26.18 Aligned_cols=21 Identities=33% Similarity=0.969 Sum_probs=13.0
Q ss_pred cCCCccchhhhh----cCCCCCCcc
Q 042398 391 GCGHMTCRECGS----RVSNCPICR 411 (422)
Q Consensus 391 ~CGH~fC~~Ci~----~~~~CP~CR 411 (422)
.|++.||.+|-. .+..||-|.
T Consensus 26 ~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CCCCccccCcChhhhccccCCcCCC
Confidence 688999999966 457899984
No 163
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=32.56 E-value=18 Score=37.06 Aligned_cols=42 Identities=26% Similarity=0.592 Sum_probs=30.9
Q ss_pred CCcCCccccccccccc----ccccCCCccchhhhhcC-------CCCCCcccc
Q 042398 372 VAETQACPICLTNAKD----LAFGCGHMTCRECGSRV-------SNCPICRQR 413 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~----v~l~CGH~fC~~Ci~~~-------~~CP~CR~~ 413 (422)
......|||=.+.-.+ +.+.|||+.-.+-+..+ ..||.|...
T Consensus 333 fHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 333 FHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred ccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 4456789986665554 57799999888777754 579999654
No 164
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=31.64 E-value=64 Score=31.73 Aligned_cols=37 Identities=30% Similarity=0.604 Sum_probs=30.3
Q ss_pred cCCceEEEEEEeCCcccccCCCCCCCCchhHHHHHHHHHHhcCCCeeEEE
Q 042398 218 SGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVL 267 (422)
Q Consensus 218 ~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~AS~~PlSIii 267 (422)
.+.+|+|.+|+-||+.. |-++-+|+-.|+++-|.=+|
T Consensus 138 ~~~~~~VyvilGDGEl~-------------EG~~WEAam~Aah~~L~NLi 174 (243)
T COG3959 138 KGSPYRVYVILGDGELD-------------EGQVWEAAMTAAHYKLDNLI 174 (243)
T ss_pred cCCCceEEEEecCcccc-------------cccHHHHHHHHHHhccCcEE
Confidence 45689999999999997 46888999999998776433
No 165
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=31.47 E-value=34 Score=28.09 Aligned_cols=43 Identities=28% Similarity=0.648 Sum_probs=17.2
Q ss_pred cCCccccccccccc-----ccc---cCCCccchhhhh-----cCCCCCCccccccC
Q 042398 374 ETQACPICLTNAKD-----LAF---GCGHMTCRECGS-----RVSNCPICRQRITN 416 (422)
Q Consensus 374 e~~~CpIC~~~~~~-----v~l---~CGH~fC~~Ci~-----~~~~CP~CR~~i~~ 416 (422)
....|.||-+..-. +.. .|+--.|..|.. ..+.||.|+.+...
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 34689999987643 222 566667999987 24789999987653
No 166
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.40 E-value=22 Score=39.60 Aligned_cols=24 Identities=29% Similarity=0.978 Sum_probs=19.7
Q ss_pred ccccCCCccchhhhhcC--CCCCCccc
Q 042398 388 LAFGCGHMTCRECGSRV--SNCPICRQ 412 (422)
Q Consensus 388 v~l~CGH~fC~~Ci~~~--~~CP~CR~ 412 (422)
+.+.|||..|..|...+ ..|| |..
T Consensus 29 vsl~cghtic~~c~~~lyn~scp-~~~ 54 (861)
T KOG3161|consen 29 VSLQCGHTICGHCVQLLYNASCP-TKR 54 (861)
T ss_pred ccccccchHHHHHHHhHhhccCC-CCc
Confidence 56799999999999976 6788 543
No 167
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.39 E-value=15 Score=33.79 Aligned_cols=25 Identities=28% Similarity=0.856 Sum_probs=20.0
Q ss_pred CccchhhhhcC-CCCCCccccccCcc
Q 042398 394 HMTCRECGSRV-SNCPICRQRITNRL 418 (422)
Q Consensus 394 H~fC~~Ci~~~-~~CP~CR~~i~~~i 418 (422)
+.||.+|..+. ..||.|..+|...-
T Consensus 28 ~~fC~kCG~~tI~~Cp~C~~~IrG~y 53 (158)
T PF10083_consen 28 EKFCSKCGAKTITSCPNCSTPIRGDY 53 (158)
T ss_pred HHHHHHhhHHHHHHCcCCCCCCCCce
Confidence 55899998864 78999999987643
No 168
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=29.72 E-value=18 Score=36.02 Aligned_cols=46 Identities=26% Similarity=0.624 Sum_probs=21.3
Q ss_pred cCCcccccccccccc-cccC---C--CccchhhhhcC----CCCCCccccccCccc
Q 042398 374 ETQACPICLTNAKDL-AFGC---G--HMTCRECGSRV----SNCPICRQRITNRLR 419 (422)
Q Consensus 374 e~~~CpIC~~~~~~v-~l~C---G--H~fC~~Ci~~~----~~CP~CR~~i~~~i~ 419 (422)
+...||||-....-. +..= | |.+|..|...| ..||.|-..-...+.
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~ 226 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDHEKLE 226 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---SS-EEE
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCCccee
Confidence 457999999988763 2222 4 44699999877 579999776544443
No 169
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=29.13 E-value=46 Score=33.74 Aligned_cols=148 Identities=13% Similarity=0.210 Sum_probs=74.5
Q ss_pred cCCccccHHHHHHHHHhcCCccccceeeeeccCCCCCCCCCCCCCCCcccCCCCCC------H---HHHHHHHHhccccc
Q 042398 77 IPDTFSSLEQVTAALRDSGLESSNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPN------P---YEKAITIIGKTLAP 147 (422)
Q Consensus 77 i~~~~~~ld~i~~~l~~~G~~~~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N------~---Y~~AI~~ig~il~~ 147 (422)
+.+...-||.|++|++.+|++- .+.+|||+.+|--+ +.+.=.|.-...+ . =++-|.-..+++..
T Consensus 76 ~~~~eeaL~ll~~Ai~~aGy~~-~v~ialD~AAsefy------d~~~gkY~~~~~~~~~~~~~~~s~delid~y~~li~~ 148 (295)
T PF00113_consen 76 IDDNEEALDLLMEAIKEAGYEP-DVAIALDVAASEFY------DEEDGKYDLEFKSKEKDPSRYKSSDELIDYYKDLIKK 148 (295)
T ss_dssp BSSHHHHHHHHHHHHHHTT-TT-TBEEEEE--GGGGE------ETETTEEETTTTSSSSTGGGEEEHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHccccc-eeeeeccccHHHhh------hccCCeEEEeecccccccccccCHHHHHHHHHHHHHh
Confidence 3455567899999999999995 99999999999753 1111112111111 0 12223333333333
Q ss_pred cCCCCCcceeeecCCCCCCCCCcccCCCCCCC-CCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcCCceEEEE
Q 042398 148 FDEDNLIPCFGFGDATTHDQEVFSFHDDHTPC-HGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSGGQYHVLV 226 (422)
Q Consensus 148 yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~~~-~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLl 226 (422)
| |+...= ||.. .+.+++...=.+.=.++++-|--.|.--.+.+.+-.++.. .=.+
T Consensus 149 Y------PIvsIE---------------Dpf~edD~e~w~~lt~~~g~~~~iVGDDl~vTn~~ri~~~i~~~~---~na~ 204 (295)
T PF00113_consen 149 Y------PIVSIE---------------DPFDEDDWEGWAKLTKRLGDKIQIVGDDLFVTNPKRIKKGIEKKA---CNAL 204 (295)
T ss_dssp S-------EEEEE---------------SSS-TT-HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHHCT-----SEE
T ss_pred c------CeEEEE---------------ccccccchHHHHHHHHhhhcceeeecccccccchhhhhccchhhh---ccch
Confidence 3 333321 2221 3466665554444457888786555433333333223211 1113
Q ss_pred EEeCCcccccCCCCCCCCchhHHHHHHHHHHhcCCCeeEEE
Q 042398 227 IIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVL 267 (422)
Q Consensus 227 IiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~AS~~PlSIii 267 (422)
+|-=.||.- .-+|++++..|...-..+|+
T Consensus 205 llK~NQigT------------vte~lea~~~a~~~g~~~vv 233 (295)
T PF00113_consen 205 LLKPNQIGT------------VTETLEAVKLAKSAGWGVVV 233 (295)
T ss_dssp EE-HHHHSS------------HHHHHHHHHHHHHTT-EEEE
T ss_pred hhhhhhhHH------------HHHHHHHHHHHHHCCceeec
Confidence 444445543 45799999999887777666
No 170
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=28.64 E-value=35 Score=22.09 Aligned_cols=11 Identities=27% Similarity=0.842 Sum_probs=5.9
Q ss_pred ccccccccccc
Q 042398 377 ACPICLTNAKD 387 (422)
Q Consensus 377 ~CpIC~~~~~~ 387 (422)
.||-|......
T Consensus 2 ~CP~C~~~V~~ 12 (26)
T PF10571_consen 2 TCPECGAEVPE 12 (26)
T ss_pred cCCCCcCCchh
Confidence 46666655544
No 172
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=28.55 E-value=2.1e+02 Score=30.30 Aligned_cols=73 Identities=22% Similarity=0.278 Sum_probs=47.6
Q ss_pred CHHHHHHHHHh----hCCcccccCCCChHHHHHHHHHHHHHcCCceEEEEEEeCCcccccCCCCCCCCchhHHHHHHHHH
Q 042398 181 GFEEVLACYRN----IVPNLRLAGPTSYAPVVEAAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIV 256 (422)
Q Consensus 181 G~~gvl~~Y~~----~l~~v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv 256 (422)
++...+..++. .+-.|++.- -++.-+.+++....++.|-+- +.+|.+||.... .+++ +.
T Consensus 248 ~~~~~~~~~~~~~~~~~~GVR~DS-Gd~~~~~~kvr~~ld~~G~~~-~~Ii~Sdg~lde--------------~~i~-~l 310 (405)
T COG1488 248 AFLNAIKVAKALGDKRLDGVRLDS-GDPRELSEKVRAHLDKLGYDP-VKIIVSDGLLDE--------------KIIA-LL 310 (405)
T ss_pred HHHHhHHHHHhcccccceEEECCC-CCHHHHHHHHHHHHHHcCCCc-eEEEEeCCcchH--------------HHHH-HH
Confidence 34444444443 455566643 577888888888777766444 888999997642 4444 44
Q ss_pred HhcCCCeeEEEEecCC
Q 042398 257 AASSYPLSIVLVGVGD 272 (422)
Q Consensus 257 ~AS~~PlSIiiVGVG~ 272 (422)
++...| +..-|||.
T Consensus 311 ~~~g~~--~d~FGvGT 324 (405)
T COG1488 311 RAFGAR--NDAFGVGT 324 (405)
T ss_pred HHhCCC--ccEeccch
Confidence 456767 88889995
No 173
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=28.30 E-value=26 Score=35.86 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=34.7
Q ss_pred CCcCCcccccccccccccc-cCCCc-cchhhhhc-----CCCCCCccccccCcc
Q 042398 372 VAETQACPICLTNAKDLAF-GCGHM-TCRECGSR-----VSNCPICRQRITNRL 418 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~v~l-~CGH~-fC~~Ci~~-----~~~CP~CR~~i~~~i 418 (422)
......|.+|+++....++ +|+|. ||..|..+ ...|++|...+.+..
T Consensus 133 ~~~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~ 186 (394)
T KOG2113|consen 133 KGATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAG 186 (394)
T ss_pred ccCccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhh
Confidence 4566789999988877544 99998 79888654 357999977665443
No 174
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=28.29 E-value=4.8e+02 Score=31.44 Aligned_cols=115 Identities=14% Similarity=0.280 Sum_probs=74.2
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCCCcceeeecCCCCCCCCCcccCCCCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHTP 178 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~~ 178 (422)
-.+.|-+|-++|.. +..+| -|-..+-.+|+-+-+|-.|-..-|+-...+...||+ ++-
T Consensus 226 KdiviLlD~SgSm~--------g~~~~----------lak~tv~~iLdtLs~~Dfvni~tf~~~~~~v~pc~~----~~l 283 (1104)
T KOG2353|consen 226 KDIVILLDVSGSMS--------GLRLD----------LAKQTVNEILDTLSDNDFVNILTFNSEVNPVSPCFN----GTL 283 (1104)
T ss_pred cceEEEEecccccc--------chhhH----------HHHHHHHHHHHhcccCCeEEEEeeccccCccccccc----Cce
Confidence 34666677776652 22233 334445555666666667777778766544444432 334
Q ss_pred CCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcC----C-----ceEEEEEEeCCcccc
Q 042398 179 CHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSG----G-----QYHVLVIIADGQVTR 235 (422)
Q Consensus 179 ~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~----~-----~Y~VLlIiTDG~i~d 235 (422)
+++--...+..++.+..++..|-++|.-..+.|-+.-...+ + =+.+.++||||...+
T Consensus 284 vqAt~~nk~~~~~~i~~l~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~C~~~iml~tdG~~~~ 349 (1104)
T KOG2353|consen 284 VQATMRNKKVFKEAIETLDAKGIANYTAALEYAFSLLRDYNDSRANTQRSPCNQAIMLITDGVDEN 349 (1104)
T ss_pred eecchHHHHHHHHHHhhhccccccchhhhHHHHHHHHHHhccccccccccccceeeEEeecCCccc
Confidence 45555566677788888889999999999999987654321 1 368889999998775
No 175
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=28.03 E-value=30 Score=36.42 Aligned_cols=30 Identities=30% Similarity=0.697 Sum_probs=23.1
Q ss_pred cCCccccccccccc---ccccCCCccchhhhhc
Q 042398 374 ETQACPICLTNAKD---LAFGCGHMTCRECGSR 403 (422)
Q Consensus 374 e~~~CpIC~~~~~~---v~l~CGH~fC~~Ci~~ 403 (422)
....||||+-+... .+..|.-..|.+|...
T Consensus 73 r~~ecpicflyyps~~n~~rcC~~~Ic~ecf~~ 105 (482)
T KOG2789|consen 73 RKTECPICFLYYPSAKNLVRCCSETICGECFAP 105 (482)
T ss_pred ccccCceeeeecccccchhhhhccchhhhheec
Confidence 34689999987755 3457888899999873
No 176
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=27.88 E-value=7.4e+02 Score=27.45 Aligned_cols=155 Identities=11% Similarity=0.178 Sum_probs=86.7
Q ss_pred cceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccc---cCCCCCcceeeecCCCCCC----CCCccc
Q 042398 100 NLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAP---FDEDNLIPCFGFGDATTHD----QEVFSF 172 (422)
Q Consensus 100 nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~---yD~D~~ip~~GFGa~~~~~----~~vf~~ 172 (422)
-+++.||.+.|+-.+ .. . .+...+.+.|++.|-.+++. +.+.-++-++-||...+.+ .+|+-+
T Consensus 12 ailflIDvs~sM~~~----~~--~----~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t~n~~~~~~i~v~ 81 (584)
T TIGR00578 12 SLIFLVDASKAMFEE----SQ--G----EDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKDKNSVNFKNIYVL 81 (584)
T ss_pred EEEEEEECCHHHcCC----Cc--C----cCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCCCCccCCCceEEE
Confidence 489999999998531 00 1 11357888888888776654 4556689999999875542 355444
Q ss_pred CC-CCCCCCCHHHHHHHHHhh-----C-CcccccCCCChHHHHHHHHHHHHHcCCce--EEEEEEeCCcccccCCCCCCC
Q 042398 173 HD-DHTPCHGFEEVLACYRNI-----V-PNLRLAGPTSYAPVVEAAMDIVEKSGGQY--HVLVIIADGQVTRSVNTGDGE 243 (422)
Q Consensus 173 ~~-~~~~~~G~~gvl~~Y~~~-----l-~~v~l~GPT~fapiI~~a~~~~~~~~~~Y--~VLlIiTDG~i~d~~~~~~~~ 243 (422)
++ +.|..+-+..+.+. .+- + .....+-...++.++-.++.+....+.+| -=+++|||- |.+|+.
T Consensus 82 ~~L~~p~a~~i~~L~~l-~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~~k~~~kRI~lfTd~------D~P~~~ 154 (584)
T TIGR00578 82 QELDNPGAKRILELDQF-KGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQFRMSHKRIMLFTNE------DNPHGN 154 (584)
T ss_pred eeCCCCCHHHHHHHHHH-hhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcchhhcCcEEEEECCC------CCCCCC
Confidence 43 33333322222111 110 0 00111112477888888887765432222 235677864 233433
Q ss_pred CchhHHHHHHHHHHhcCCCeeEEEEecC
Q 042398 244 LSSQEQKTIKSIVAASSYPLSIVLVGVG 271 (422)
Q Consensus 244 ~~~~~~~T~~aIv~AS~~PlSIiiVGVG 271 (422)
=+.....+..-+.+..++-+.|-++.+.
T Consensus 155 ~~~~~~~a~~~a~dl~~~gi~ielf~l~ 182 (584)
T TIGR00578 155 DSAKASRARTKAGDLRDTGIFLDLMHLK 182 (584)
T ss_pred chhHHHHHHHHHHHHHhcCeEEEEEecC
Confidence 2222344444566777888888888765
No 177
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.45 E-value=23 Score=31.72 Aligned_cols=23 Identities=35% Similarity=1.021 Sum_probs=16.0
Q ss_pred ccchhhhhc-CCCCCCccccccCc
Q 042398 395 MTCRECGSR-VSNCPICRQRITNR 417 (422)
Q Consensus 395 ~fC~~Ci~~-~~~CP~CR~~i~~~ 417 (422)
.||..|... ...||.|..+|...
T Consensus 29 afcskcgeati~qcp~csasirgd 52 (160)
T COG4306 29 AFCSKCGEATITQCPICSASIRGD 52 (160)
T ss_pred HHHhhhchHHHhcCCccCCccccc
Confidence 477777764 46788888877543
No 178
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.36 E-value=28 Score=36.96 Aligned_cols=31 Identities=29% Similarity=0.785 Sum_probs=25.4
Q ss_pred CcCCccccccccccc--ccccCCCccchhhhhc
Q 042398 373 AETQACPICLTNAKD--LAFGCGHMTCRECGSR 403 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~--v~l~CGH~fC~~Ci~~ 403 (422)
.....|.||.+.... +.+.|||.||..|...
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~ 100 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTG 100 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHH
Confidence 345689999999875 4459999999999884
No 179
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=27.27 E-value=32 Score=28.93 Aligned_cols=36 Identities=28% Similarity=0.765 Sum_probs=29.3
Q ss_pred CCcccccccccccccccCCCccchhhhhcCCCCCCccccc
Q 042398 375 TQACPICLTNAKDLAFGCGHMTCRECGSRVSNCPICRQRI 414 (422)
Q Consensus 375 ~~~CpIC~~~~~~v~l~CGH~fC~~Ci~~~~~CP~CR~~i 414 (422)
...|.+|..... .=||.+|..|.-+...|.+|-..+
T Consensus 44 ~~~C~~CK~~v~----q~g~~YCq~CAYkkGiCamCGKki 79 (90)
T PF10235_consen 44 SSKCKICKTKVH----QPGAKYCQTCAYKKGICAMCGKKI 79 (90)
T ss_pred Cccccccccccc----cCCCccChhhhcccCcccccCCee
Confidence 357999985442 448889999999999999999887
No 180
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=27.08 E-value=15 Score=24.42 Aligned_cols=19 Identities=37% Similarity=1.059 Sum_probs=11.0
Q ss_pred CccchhhhhcC--------CCCCCccc
Q 042398 394 HMTCRECGSRV--------SNCPICRQ 412 (422)
Q Consensus 394 H~fC~~Ci~~~--------~~CP~CR~ 412 (422)
|.||..|.... ..||.|..
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcC
Confidence 77888888743 46888865
No 181
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.16 E-value=23 Score=35.23 Aligned_cols=44 Identities=25% Similarity=0.567 Sum_probs=32.7
Q ss_pred CCcCCccccccccccc---c--cccCCC-----ccchhhhhcC------------CCCCCcccccc
Q 042398 372 VAETQACPICLTNAKD---L--AFGCGH-----MTCRECGSRV------------SNCPICRQRIT 415 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~---v--~l~CGH-----~fC~~Ci~~~------------~~CP~CR~~i~ 415 (422)
.+.+..|-||+..-+| . +-||.. -.+..|+.+| ..||.|+....
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 4567799999998887 2 338743 3788999865 36999998754
No 182
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=25.54 E-value=1.4e+02 Score=29.15 Aligned_cols=49 Identities=24% Similarity=0.413 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHcCCceEEEEEEeCCcccccCCCCCCCCchhHHHHHHHHHHhcCCCee
Q 042398 205 APVVEAAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLS 264 (422)
Q Consensus 205 apiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~AS~~PlS 264 (422)
.|++..+++.++++++.-|++=+++||.|+-- .+-....|.-|.+.-+.
T Consensus 13 n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh-----------~~Hl~al~~~a~~~gv~ 61 (223)
T PF06415_consen 13 NPVLLEAIEHAKKNGGRLHLMGLLSDGGVHSH-----------IDHLFALIKLAKKQGVK 61 (223)
T ss_dssp SHHHHHHHHHHCCTT--EEEEEEESS-SSS-------------HHHHHHHHHHHHHTT-S
T ss_pred CHHHHHHHHHHHhcCCeEEEEEEecCCCcccc-----------HHHHHHHHHHHHHcCCC
Confidence 37888899999888888999999999999852 44555555555555443
No 183
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.53 E-value=23 Score=35.85 Aligned_cols=12 Identities=33% Similarity=0.999 Sum_probs=9.7
Q ss_pred CCCCCccccccC
Q 042398 405 SNCPICRQRITN 416 (422)
Q Consensus 405 ~~CP~CR~~i~~ 416 (422)
..||+||+.+.-
T Consensus 355 ~~cp~cr~~fci 366 (381)
T KOG3899|consen 355 AQCPTCRKNFCI 366 (381)
T ss_pred CCCcchhhceEE
Confidence 469999998764
No 184
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=25.44 E-value=55 Score=25.03 Aligned_cols=41 Identities=29% Similarity=0.689 Sum_probs=31.5
Q ss_pred cCCcccccccccc--c-ccc--cCCCccchhhhhcCCCCCC--ccccc
Q 042398 374 ETQACPICLTNAK--D-LAF--GCGHMTCRECGSRVSNCPI--CRQRI 414 (422)
Q Consensus 374 e~~~CpIC~~~~~--~-v~l--~CGH~fC~~Ci~~~~~CP~--CR~~i 414 (422)
+...|++|-+.++ + ++. .||-.+.++|......|-. |...+
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~g~C~~~~c~~~~ 51 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKAGGCINYSCGTGF 51 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhhCCceEeccCCCCc
Confidence 3458999999995 3 444 8999999999998888866 65543
No 185
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.86 E-value=81 Score=27.61 Aligned_cols=36 Identities=22% Similarity=0.534 Sum_probs=26.0
Q ss_pred Ccccccccccccc---------------cccCCCccchhhhh----cCCCCCCcc
Q 042398 376 QACPICLTNAKDL---------------AFGCGHMTCRECGS----RVSNCPICR 411 (422)
Q Consensus 376 ~~CpIC~~~~~~v---------------~l~CGH~fC~~Ci~----~~~~CP~CR 411 (422)
..|-.|+..+... --.|.+.||.+|-. .+..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 4688888765431 22688999999966 347899995
No 186
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.38 E-value=27 Score=31.61 Aligned_cols=40 Identities=43% Similarity=0.971 Sum_probs=25.2
Q ss_pred CCcCCcccccccccccccccCCCc-------cchhhhhcC--------CCCCCcccc
Q 042398 372 VAETQACPICLTNAKDLAFGCGHM-------TCRECGSRV--------SNCPICRQR 413 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~v~l~CGH~-------fC~~Ci~~~--------~~CP~CR~~ 413 (422)
..++..|.||+..-. .=.|||. ||.+|.-+. -.|-+||..
T Consensus 62 v~ddatC~IC~KTKF--ADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 62 VGDDATCGICHKTKF--ADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred cCcCcchhhhhhccc--ccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 356679999985432 1256664 677777643 248888765
No 187
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=24.00 E-value=46 Score=33.98 Aligned_cols=39 Identities=28% Similarity=0.641 Sum_probs=27.2
Q ss_pred cCCccccccccccc-cc-c--cCCCc--cchhhhhcC----CCCCCccc
Q 042398 374 ETQACPICLTNAKD-LA-F--GCGHM--TCRECGSRV----SNCPICRQ 412 (422)
Q Consensus 374 e~~~CpIC~~~~~~-v~-l--~CGH~--fC~~Ci~~~----~~CP~CR~ 412 (422)
....||||-..+.- ++ + .=|+. .|..|...| ..||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 45799999988765 22 2 23444 588998877 46999975
No 188
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=23.59 E-value=51 Score=33.91 Aligned_cols=26 Identities=23% Similarity=0.696 Sum_probs=16.9
Q ss_pred cCCCccchhhhhcC-------------CCCCCccccccC
Q 042398 391 GCGHMTCRECGSRV-------------SNCPICRQRITN 416 (422)
Q Consensus 391 ~CGH~fC~~Ci~~~-------------~~CP~CR~~i~~ 416 (422)
||||++-.+-..-| ..||.|-..+..
T Consensus 377 PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 377 PCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred CcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 99998543333211 469999887754
No 189
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.33 E-value=76 Score=32.77 Aligned_cols=49 Identities=27% Similarity=0.323 Sum_probs=31.6
Q ss_pred cCCCChHHHHHHHHHHHHHcCCceEEEEEEeCCcccccCCCCCCCCchhHHHHHHHHHHhcCCCeeEEEEecC
Q 042398 199 AGPTSYAPVVEAAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVG 271 (422)
Q Consensus 199 ~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~AS~~PlSIiiVGVG 271 (422)
.|-|.|.||++..- +.. .=.+|+.+|||--+- . ..+-.-|+=||+-|-|
T Consensus 325 gG~Tdf~Pvfeyle----k~~-~~~~lIyfTDG~gd~------------p-------~~~r~~~~lwVl~~~~ 373 (396)
T COG3864 325 GGGTDFSPVFEYLE----KNR-MECFLIYFTDGMGDQ------------P-------LVFRPKVLLWVLTGAK 373 (396)
T ss_pred CCCccccHHHHHHH----hhc-ccceEEEEccCCCCc------------c-------cccCCcceEEEecCCc
Confidence 46799999998653 221 127889999995432 0 1133456888887755
No 190
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=22.96 E-value=59 Score=33.18 Aligned_cols=40 Identities=20% Similarity=0.571 Sum_probs=28.2
Q ss_pred cCCccccccccccc-cccc----CCCc--cchhhhhcC----CCCCCcccc
Q 042398 374 ETQACPICLTNAKD-LAFG----CGHM--TCRECGSRV----SNCPICRQR 413 (422)
Q Consensus 374 e~~~CpIC~~~~~~-v~l~----CGH~--fC~~Ci~~~----~~CP~CR~~ 413 (422)
....||||-....- ++.. =|+. .|..|...| ..||.|...
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 45699999998865 3222 3434 599998877 479999764
No 191
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=22.89 E-value=2.4e+02 Score=28.19 Aligned_cols=22 Identities=27% Similarity=0.601 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCC
Q 042398 248 EQKTIKSIVAASSYPLSIVLVGVGDG 273 (422)
Q Consensus 248 ~~~T~~aIv~AS~~PlSIiiVGVG~~ 273 (422)
.++..+||. +|..| ||.|||-+
T Consensus 96 ~e~varai~-~~~~P---visaIGHe 117 (319)
T PF02601_consen 96 DEEVARAIA-ASPIP---VISAIGHE 117 (319)
T ss_pred hHHHHHHHH-hCCCC---EEEecCCC
Confidence 444455554 33455 56666653
No 192
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=22.72 E-value=92 Score=28.51 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.6
Q ss_pred chhHHHHHHHHHHhcCCCeeEEEEe
Q 042398 245 SSQEQKTIKSIVAASSYPLSIVLVG 269 (422)
Q Consensus 245 ~~~~~~T~~aIv~AS~~PlSIiiVG 269 (422)
|+.|++.++.|..++..|..|+|.|
T Consensus 5 s~~m~~~~~~~~~~a~~~~pVlI~G 29 (168)
T PF00158_consen 5 SPAMKRLREQAKRAASSDLPVLITG 29 (168)
T ss_dssp SHHHHHHHHHHHHHTTSTS-EEEEC
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEc
Confidence 6779999999999999999999998
No 193
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=22.16 E-value=71 Score=38.64 Aligned_cols=70 Identities=24% Similarity=0.389 Sum_probs=48.2
Q ss_pred CCcceeeecCCCCCCCCCcccCCCCCCCCCHHHHHHHHHhhCCcccccCCC-----ChHHHHHHHHHHH-HHcCCceEEE
Q 042398 152 NLIPCFGFGDATTHDQEVFSFHDDHTPCHGFEEVLACYRNIVPNLRLAGPT-----SYAPVVEAAMDIV-EKSGGQYHVL 225 (422)
Q Consensus 152 ~~ip~~GFGa~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~l~~v~l~GPT-----~fapiI~~a~~~~-~~~~~~Y~VL 225 (422)
=.||+|||-.. ..| +-..++.+-..|-+.+++||..||- +|.-.|.++|.-. +++. .-.-
T Consensus 2146 le~PaYglQ~T----~~v--------P~dSies~A~~yirqirkvQP~GPYrl~GYSyG~~l~f~ma~~Lqe~~--~~~~ 2211 (2376)
T KOG1202|consen 2146 LEIPAYGLQCT----EAV--------PLDSIESLAAYYIRQIRKVQPEGPYRLAGYSYGACLAFEMASQLQEQQ--SPAP 2211 (2376)
T ss_pred cCCcchhhhcc----ccC--------CcchHHHHHHHHHHHHHhcCCCCCeeeeccchhHHHHHHHHHHHHhhc--CCCc
Confidence 35788887542 122 3356889999999999999999994 6667777666433 3322 2334
Q ss_pred EEEeCCcccc
Q 042398 226 VIIADGQVTR 235 (422)
Q Consensus 226 lIiTDG~i~d 235 (422)
||+-||..+-
T Consensus 2212 lillDGspty 2221 (2376)
T KOG1202|consen 2212 LILLDGSPTY 2221 (2376)
T ss_pred EEEecCchHH
Confidence 8999998874
No 194
>PLN02189 cellulose synthase
Probab=21.35 E-value=53 Score=38.69 Aligned_cols=41 Identities=37% Similarity=0.784 Sum_probs=29.8
Q ss_pred CCccccccccccc-----ccc---cCCCccchhhhhc-----CCCCCCcccccc
Q 042398 375 TQACPICLTNAKD-----LAF---GCGHMTCRECGSR-----VSNCPICRQRIT 415 (422)
Q Consensus 375 ~~~CpIC~~~~~~-----v~l---~CGH~fC~~Ci~~-----~~~CP~CR~~i~ 415 (422)
...|.||-|.... +.. .|+--.|..|.+- .+.||.|+....
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3599999998542 222 4666679999872 378999998875
No 195
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=21.34 E-value=36 Score=21.29 Aligned_cols=7 Identities=43% Similarity=1.127 Sum_probs=3.4
Q ss_pred CCCCccc
Q 042398 406 NCPICRQ 412 (422)
Q Consensus 406 ~CP~CR~ 412 (422)
.||.|..
T Consensus 15 fC~~CG~ 21 (23)
T PF13240_consen 15 FCPNCGT 21 (23)
T ss_pred chhhhCC
Confidence 4555544
No 196
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.30 E-value=46 Score=34.90 Aligned_cols=30 Identities=30% Similarity=0.636 Sum_probs=20.7
Q ss_pred CCccccccccccc----ccc--cCCCccchhhhhcC
Q 042398 375 TQACPICLTNAKD----LAF--GCGHMTCRECGSRV 404 (422)
Q Consensus 375 ~~~CpIC~~~~~~----v~l--~CGH~fC~~Ci~~~ 404 (422)
-..||.|.....- ..+ .|||.||+.|...+
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~ 341 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDW 341 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcch
Confidence 3578888866432 222 68999999999654
No 197
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=21.11 E-value=6.5e+02 Score=23.93 Aligned_cols=95 Identities=19% Similarity=0.344 Sum_probs=50.7
Q ss_pred CHHHHHHHHHhccccccC--CCCCcceeeecCCCC-----C----C--------CCCcccCCCC-----CCC-CCHHHHH
Q 042398 132 NPYEKAITIIGKTLAPFD--EDNLIPCFGFGDATT-----H----D--------QEVFSFHDDH-----TPC-HGFEEVL 186 (422)
Q Consensus 132 N~Y~~AI~~ig~il~~yD--~D~~ip~~GFGa~~~-----~----~--------~~vf~~~~~~-----~~~-~G~~gvl 186 (422)
+..+.++++|-..|.... ++-+|-..-|+.... . . .+.|.-.+++ .+| .-++.++
T Consensus 20 g~~~~~~~sl~~~l~~l~~~~~~~vgiitfd~~V~~y~l~~~~~~~~~~v~~dl~~~~~p~~~~llv~~~e~~~~i~~ll 99 (243)
T PF04811_consen 20 GLLQSLIESLKSALDSLPGDERTRVGIITFDSSVHFYNLSSSLSQPQMIVVSDLDDPFIPLPDGLLVPLSECRDAIEELL 99 (243)
T ss_dssp THHHHHHHHHHHHGCTSSTSTT-EEEEEEESSSEEEEETTTTSSSTEEEEEHHTTSHHSSTSSSSSEETTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCCcEEEEEEeCCEEEEEECCCCcCCCcccchHHHhhcccCCcccEEEEhHHhHHHHHHHH
Confidence 567778888888887777 888888888887641 0 0 0111111111 112 2255555
Q ss_pred HHHHhhCCcc-cccCCCChHHHHHHHHHHHH--HcCCceEEEEEE
Q 042398 187 ACYRNIVPNL-RLAGPTSYAPVVEAAMDIVE--KSGGQYHVLVII 228 (422)
Q Consensus 187 ~~Y~~~l~~v-~l~GPT~fapiI~~a~~~~~--~~~~~Y~VLlIi 228 (422)
+.-.+..+.. .-....++.+.|+.|..+.+ ..+| .|+++.
T Consensus 100 ~~L~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~~gG--kI~~F~ 142 (243)
T PF04811_consen 100 ESLPSIFPETAGKRPERCLGSALSAALSLLSSRNTGG--KILVFT 142 (243)
T ss_dssp HHHHHHSTT-TTB-----HHHHHHHHHHHHHHHTS-E--EEEEEE
T ss_pred HHhhhhcccccccCccccHHHHHHHHHHHHhccccCC--EEEEEe
Confidence 5555444333 13345789999999999887 4454 555554
No 198
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=20.99 E-value=1.8e+02 Score=29.54 Aligned_cols=9 Identities=22% Similarity=0.327 Sum_probs=3.5
Q ss_pred ccCCCChHH
Q 042398 198 LAGPTSYAP 206 (422)
Q Consensus 198 l~GPT~fap 206 (422)
+.|++.+..
T Consensus 28 v~~~~~~~~ 36 (349)
T cd08550 28 VGGKTVLKK 36 (349)
T ss_pred EEChHHHHH
Confidence 344443333
No 199
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=20.98 E-value=2e+02 Score=28.02 Aligned_cols=53 Identities=19% Similarity=0.336 Sum_probs=31.0
Q ss_pred cCCCChHHHHHHHHHHHHHc-CCceEEEEEEeCCcccccCCCCCCCCchhHHHHHHHHHHhcCCCeeEEEEe
Q 042398 199 AGPTSYAPVVEAAMDIVEKS-GGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVG 269 (422)
Q Consensus 199 ~GPT~fapiI~~a~~~~~~~-~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~AS~~PlSIiiVG 269 (422)
+|-.--..+++++.+..+-- ...|. .+|-.||.|+. +|+..+++| -.-++++|
T Consensus 144 ~GQ~fi~~~l~KI~~lr~~~~~~~~~-~~IeVDGGI~~--------------~~i~~~~~a---Gad~~V~G 197 (229)
T PRK09722 144 AGQPFIPEMLDKIAELKALRERNGLE-YLIEVDGSCNQ--------------KTYEKLMEA---GADVFIVG 197 (229)
T ss_pred cchhccHHHHHHHHHHHHHHHhcCCC-eEEEEECCCCH--------------HHHHHHHHc---CCCEEEEC
Confidence 45444444555555433211 12344 47889999985 788888876 34566655
No 200
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=20.92 E-value=2e+02 Score=28.14 Aligned_cols=53 Identities=11% Similarity=0.210 Sum_probs=30.5
Q ss_pred cCCCChHHHHHHHHHHHHHc-CCceEEEEEEeCCcccccCCCCCCCCchhHHHHHHHHHHhcCCCeeEEEEe
Q 042398 199 AGPTSYAPVVEAAMDIVEKS-GGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVG 269 (422)
Q Consensus 199 ~GPT~fapiI~~a~~~~~~~-~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~AS~~PlSIiiVG 269 (422)
+|-.--..+++++.+..+-- ...|.+ +|-.||.|+. +|+..+++| ..-++++|
T Consensus 154 gGQ~f~~~~l~KI~~lr~~~~~~~~~~-~IeVDGGI~~--------------~ti~~l~~a---GaD~~V~G 207 (228)
T PRK08091 154 GTKAPSDLILDRVIQVENRLGNRRVEK-LISIDGSMTL--------------ELASYLKQH---QIDWVVSG 207 (228)
T ss_pred CCccccHHHHHHHHHHHHHHHhcCCCc-eEEEECCCCH--------------HHHHHHHHC---CCCEEEEC
Confidence 45443334555555432211 113554 5889999986 788888876 33456665
No 201
>PLN02400 cellulose synthase
Probab=20.89 E-value=54 Score=38.81 Aligned_cols=41 Identities=29% Similarity=0.698 Sum_probs=29.7
Q ss_pred CCccccccccccc-----ccc---cCCCccchhhhh-----cCCCCCCcccccc
Q 042398 375 TQACPICLTNAKD-----LAF---GCGHMTCRECGS-----RVSNCPICRQRIT 415 (422)
Q Consensus 375 ~~~CpIC~~~~~~-----v~l---~CGH~fC~~Ci~-----~~~~CP~CR~~i~ 415 (422)
...|.||-|..-. +.. .|+--+|+.|.+ ..+.||.|+....
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 3599999987543 222 556557999987 2378999998875
No 202
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=20.46 E-value=42 Score=33.80 Aligned_cols=24 Identities=29% Similarity=0.750 Sum_probs=17.2
Q ss_pred cCCCccchhhhhcC--------CCCCCccccc
Q 042398 391 GCGHMTCRECGSRV--------SNCPICRQRI 414 (422)
Q Consensus 391 ~CGH~fC~~Ci~~~--------~~CP~CR~~i 414 (422)
.=.|.||..|..+. ..||.|+...
T Consensus 108 ~~~~RFCg~CG~~~~~~~~g~~~~C~~cg~~~ 139 (279)
T COG2816 108 YRSHRFCGRCGTKTYPREGGWARVCPKCGHEH 139 (279)
T ss_pred HhhCcCCCCCCCcCccccCceeeeCCCCCCcc
Confidence 44677888888754 4688887764
Done!