Query 042398
Match_columns 422
No_of_seqs 426 out of 2028
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 09:47:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042398.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042398hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.1 7.6E-11 2.6E-15 91.7 4.8 51 372-422 12-64 (68)
2 4ic3_A E3 ubiquitin-protein li 99.0 5.4E-11 1.9E-15 93.6 1.7 50 372-421 21-72 (74)
3 2ecg_A Baculoviral IAP repeat- 99.0 9.8E-11 3.4E-15 92.2 2.1 50 372-421 22-73 (75)
4 2yho_A E3 ubiquitin-protein li 98.9 2.4E-10 8.1E-15 91.4 1.4 49 373-421 16-66 (79)
5 2d8t_A Dactylidin, ring finger 98.9 9.9E-10 3.4E-14 85.1 4.0 46 371-416 11-61 (71)
6 2vje_A E3 ubiquitin-protein li 98.9 1.7E-10 5.8E-15 88.5 -1.0 52 371-422 4-63 (64)
7 2ysl_A Tripartite motif-contai 98.8 2.3E-09 7.8E-14 82.9 5.1 47 370-416 15-69 (73)
8 2djb_A Polycomb group ring fin 98.8 2.3E-09 8E-14 83.2 4.5 48 370-417 10-63 (72)
9 2ea6_A Ring finger protein 4; 98.8 1.8E-09 6.1E-14 82.2 3.6 46 371-416 11-68 (69)
10 2vje_B MDM4 protein; proto-onc 98.8 3.9E-10 1.3E-14 86.2 -0.5 49 373-421 5-61 (63)
11 2yur_A Retinoblastoma-binding 98.8 3.1E-09 1E-13 83.1 4.0 48 369-416 9-64 (74)
12 2ecy_A TNF receptor-associated 98.8 4.4E-09 1.5E-13 80.2 4.4 47 371-417 11-63 (66)
13 2csy_A Zinc finger protein 183 98.8 4.5E-09 1.5E-13 83.3 4.2 46 371-416 11-61 (81)
14 2ecn_A Ring finger protein 141 98.8 2.7E-09 9.1E-14 82.1 2.7 50 372-421 12-65 (70)
15 2egp_A Tripartite motif-contai 98.8 5.8E-09 2E-13 81.7 4.6 47 370-416 7-65 (79)
16 1e4u_A Transcriptional repress 98.7 5.5E-09 1.9E-13 83.4 4.3 51 371-421 7-67 (78)
17 4ayc_A E3 ubiquitin-protein li 98.7 1.4E-09 5E-14 95.0 0.4 45 373-417 51-100 (138)
18 2ecw_A Tripartite motif-contai 98.7 1E-08 3.5E-13 80.8 5.3 47 370-416 14-71 (85)
19 1bor_A Transcription factor PM 98.7 7.1E-09 2.4E-13 77.1 3.8 45 372-416 3-49 (56)
20 2ecv_A Tripartite motif-contai 98.7 1.3E-08 4.6E-13 80.2 5.6 47 370-416 14-71 (85)
21 3ztg_A E3 ubiquitin-protein li 98.7 5.4E-09 1.9E-13 84.6 3.0 46 370-415 8-61 (92)
22 3l11_A E3 ubiquitin-protein li 98.7 4.9E-09 1.7E-13 88.4 2.7 47 370-416 10-62 (115)
23 2ect_A Ring finger protein 126 98.7 8.2E-09 2.8E-13 81.0 3.8 47 371-417 11-65 (78)
24 3ng2_A RNF4, snurf, ring finge 98.7 4.5E-09 1.5E-13 80.7 2.2 45 372-416 7-63 (71)
25 2ct2_A Tripartite motif protei 98.7 1.1E-08 3.8E-13 81.5 3.9 48 369-416 9-68 (88)
26 3t6p_A Baculoviral IAP repeat- 98.7 4.6E-09 1.6E-13 105.7 1.9 50 372-421 292-343 (345)
27 1t1h_A Gspef-atpub14, armadill 98.7 6.6E-09 2.3E-13 81.5 2.4 45 372-416 5-55 (78)
28 1chc_A Equine herpes virus-1 r 98.7 7.1E-09 2.4E-13 79.1 2.3 47 374-420 4-56 (68)
29 2ep4_A Ring finger protein 24; 98.6 1.3E-08 4.6E-13 79.0 3.7 48 372-419 12-67 (74)
30 2xeu_A Ring finger protein 4; 98.6 8E-09 2.7E-13 77.4 1.6 48 374-421 2-63 (64)
31 3fl2_A E3 ubiquitin-protein li 98.6 8.2E-09 2.8E-13 88.3 1.3 45 372-416 49-99 (124)
32 2kiz_A E3 ubiquitin-protein li 98.6 2.6E-08 9E-13 76.2 4.1 48 372-419 11-66 (69)
33 2ysj_A Tripartite motif-contai 98.6 3E-08 1E-12 74.7 4.1 41 370-410 15-63 (63)
34 2ecj_A Tripartite motif-contai 98.6 3.6E-08 1.2E-12 72.6 4.4 40 371-410 11-58 (58)
35 3lrq_A E3 ubiquitin-protein li 98.6 7.4E-09 2.5E-13 85.7 0.4 45 372-416 19-70 (100)
36 1g25_A CDK-activating kinase a 98.5 1.9E-08 6.6E-13 76.3 1.9 43 374-416 2-55 (65)
37 1iym_A EL5; ring-H2 finger, ub 98.5 3.4E-08 1.2E-12 72.2 3.0 44 372-415 2-54 (55)
38 2ckl_A Polycomb group ring fin 98.5 2E-08 6.9E-13 83.9 1.5 45 372-416 12-62 (108)
39 1jm7_B BARD1, BRCA1-associated 98.5 3.1E-08 1.1E-12 84.0 2.0 45 372-416 19-67 (117)
40 1z6u_A NP95-like ring finger p 98.5 1.9E-08 6.4E-13 89.6 0.6 46 372-417 75-126 (150)
41 1x4j_A Ring finger protein 38; 98.5 3.5E-08 1.2E-12 77.0 1.9 45 372-416 20-72 (75)
42 2l0b_A E3 ubiquitin-protein li 98.5 3.9E-08 1.4E-12 79.9 2.2 46 372-417 37-90 (91)
43 1jm7_A BRCA1, breast cancer ty 98.5 3.6E-08 1.2E-12 82.2 1.9 44 373-416 19-70 (112)
44 2y43_A E3 ubiquitin-protein li 98.5 2.9E-08 9.8E-13 81.5 1.3 45 372-416 19-69 (99)
45 2kr4_A Ubiquitin conjugation f 98.5 6.5E-08 2.2E-12 78.1 2.9 46 372-417 11-61 (85)
46 1wgm_A Ubiquitin conjugation f 98.5 1.2E-07 4.3E-12 78.6 4.7 46 372-417 19-70 (98)
47 2ecm_A Ring finger and CHY zin 98.4 5.7E-08 1.9E-12 70.8 2.2 42 374-415 4-54 (55)
48 2ckl_B Ubiquitin ligase protei 98.4 3.5E-08 1.2E-12 88.4 1.0 45 372-416 51-102 (165)
49 3hct_A TNF receptor-associated 98.4 5.9E-08 2E-12 82.4 2.2 46 371-416 14-65 (118)
50 3knv_A TNF receptor-associated 98.4 1.8E-08 6.3E-13 88.8 -1.1 44 371-414 27-76 (141)
51 2kre_A Ubiquitin conjugation f 98.4 7.6E-08 2.6E-12 80.2 2.2 45 372-416 26-75 (100)
52 1v87_A Deltex protein 2; ring- 98.3 9.3E-08 3.2E-12 80.2 1.3 43 375-417 25-95 (114)
53 2c2l_A CHIP, carboxy terminus 98.3 2.1E-07 7.2E-12 88.6 3.5 43 374-416 207-255 (281)
54 4hqo_A Sporozoite surface prot 98.3 2.4E-06 8.3E-11 81.7 10.4 151 98-283 18-176 (266)
55 1rmd_A RAG1; V(D)J recombinati 98.3 1.3E-07 4.6E-12 79.7 1.3 45 372-416 20-70 (116)
56 4hqf_A Thrombospondin-related 98.3 4.7E-06 1.6E-10 80.1 11.8 151 98-283 21-179 (281)
57 2y1n_A E3 ubiquitin-protein li 98.3 2.9E-07 9.9E-12 93.7 3.3 46 375-420 332-383 (389)
58 2ecl_A Ring-box protein 2; RNF 98.2 5.7E-07 1.9E-11 71.6 3.8 45 372-416 12-76 (81)
59 4ap4_A E3 ubiquitin ligase RNF 98.2 3.2E-07 1.1E-11 77.9 1.6 44 373-416 5-60 (133)
60 3n2n_F Anthrax toxin receptor 98.2 2.2E-05 7.4E-10 69.6 12.9 148 98-283 7-158 (185)
61 3hcs_A TNF receptor-associated 98.1 6.7E-07 2.3E-11 80.3 2.2 46 371-416 14-65 (170)
62 2f42_A STIP1 homology and U-bo 98.1 9.3E-07 3.2E-11 81.2 2.4 44 374-417 105-154 (179)
63 2yu4_A E3 SUMO-protein ligase 98.1 9.5E-07 3.3E-11 72.3 2.2 42 372-413 4-59 (94)
64 4ap4_A E3 ubiquitin ligase RNF 98.1 8.5E-07 2.9E-11 75.2 1.3 49 373-421 70-132 (133)
65 3ibs_A Conserved hypothetical 98.0 1.4E-05 4.8E-10 72.8 8.9 139 99-273 12-150 (218)
66 1shu_X Anthrax toxin receptor 98.0 7.1E-06 2.4E-10 72.5 6.2 147 99-283 7-155 (182)
67 4fx5_A VON willebrand factor t 97.9 2.4E-05 8.2E-10 81.3 9.2 156 96-283 75-231 (464)
68 2xgg_A Microneme protein 2; A/ 97.9 2.9E-05 9.8E-10 69.3 8.4 138 98-273 17-162 (178)
69 1q0p_A Complement factor B; VO 97.8 1.6E-05 5.6E-10 72.3 6.0 157 98-283 15-191 (223)
70 3htk_C E3 SUMO-protein ligase 97.8 7.8E-06 2.7E-10 79.2 3.7 45 372-416 178-232 (267)
71 3dpl_R Ring-box protein 1; ubi 97.8 5.4E-06 1.9E-10 69.7 2.2 42 374-415 36-100 (106)
72 1atz_A VON willebrand factor; 97.7 8.2E-05 2.8E-09 66.6 8.7 143 99-283 6-157 (189)
73 1ijb_A VON willebrand factor; 97.7 6.2E-05 2.1E-09 68.5 7.5 145 99-282 14-167 (202)
74 1n3y_A Integrin alpha-X; alpha 97.7 1.2E-05 4.1E-10 72.1 2.4 144 99-283 10-166 (198)
75 2b2x_A Integrin alpha-1; compu 97.7 0.00022 7.4E-09 65.7 10.7 133 98-273 22-164 (223)
76 4a0k_B E3 ubiquitin-protein li 97.6 7.4E-06 2.5E-10 70.3 0.2 42 374-415 47-111 (117)
77 2d8s_A Cellular modulator of i 97.6 2.8E-05 9.6E-10 62.1 3.5 47 372-418 12-72 (80)
78 1wim_A KIAA0161 protein; ring 97.6 1.1E-05 3.9E-10 65.5 1.0 40 374-413 4-61 (94)
79 1pt6_A Integrin alpha-1; cell 97.6 0.00042 1.4E-08 63.2 11.1 133 98-273 7-149 (213)
80 2x5n_A SPRPN10, 26S proteasome 97.6 0.0005 1.7E-08 63.1 11.5 160 100-298 4-170 (192)
81 2odp_A Complement C2; C3/C5 co 97.5 0.00012 4.2E-09 75.4 7.5 155 98-284 9-186 (509)
82 2x31_A Magnesium-chelatase 60 97.5 1.1E-05 3.7E-10 72.2 -0.7 150 99-283 6-162 (189)
83 1mf7_A Integrin alpha M; cell 97.5 1.5E-05 5.2E-10 71.6 -0.3 143 99-283 6-162 (194)
84 1v7p_C Integrin alpha-2; snake 97.5 0.001 3.5E-08 60.0 11.7 131 99-272 7-147 (200)
85 4b4t_W RPN10, 26S proteasome r 97.4 0.00062 2.1E-08 66.1 10.1 161 101-298 6-174 (268)
86 1rrk_A Complement factor B; BB 97.3 0.00042 1.4E-08 71.0 8.1 153 99-283 2-177 (497)
87 2bay_A PRE-mRNA splicing facto 97.1 0.00012 4E-09 55.5 1.3 43 375-417 3-51 (61)
88 3hrz_D Complement factor B; se 97.0 0.00079 2.7E-08 72.4 6.7 150 98-283 243-419 (741)
89 3vk6_A E3 ubiquitin-protein li 96.9 0.00035 1.2E-08 58.1 2.3 41 377-417 3-50 (101)
90 3zqk_A VON willebrand factor; 96.8 0.00091 3.1E-08 60.6 4.3 138 99-283 22-169 (199)
91 1jey_A KU70; double-strand DNA 96.7 0.008 2.7E-07 64.4 12.0 156 100-276 37-212 (609)
92 2ct0_A Non-SMC element 1 homol 96.7 0.0016 5.4E-08 51.3 4.6 46 372-417 12-65 (74)
93 1mjn_A Integrin alpha-L; rossm 96.3 0.0084 2.9E-07 53.2 7.4 138 99-282 3-151 (179)
94 3k6s_A Integrin alpha-X; cell 96.2 0.0045 1.6E-07 70.6 6.0 142 99-283 131-287 (1095)
95 3k1l_B Fancl; UBC, ring, RWD, 96.1 0.0018 6.2E-08 65.0 2.0 46 373-418 306-375 (381)
96 1jey_B KU80; double-strand DNA 96.0 0.021 7.3E-07 60.4 9.6 144 100-273 9-170 (565)
97 1yvr_A RO autoantigen, 60-kDa 95.6 0.081 2.8E-06 55.5 12.1 139 99-276 369-507 (538)
98 1vyx_A ORF K3, K3RING; zinc-bi 95.3 0.0082 2.8E-07 45.1 2.5 44 373-416 4-59 (60)
99 2nvo_A RO sixty-related protei 95.1 0.19 6.4E-06 52.9 13.1 140 99-275 363-502 (535)
100 2ko5_A Ring finger protein Z; 92.3 0.13 4.4E-06 42.2 4.2 49 372-420 25-77 (99)
101 2jun_A Midline-1; B-BOX, TRIM, 89.1 0.14 4.6E-06 41.4 1.6 30 374-403 2-35 (101)
102 2cs3_A Protein C14ORF4, MY039 88.1 0.3 1E-05 39.0 2.8 31 373-403 13-48 (93)
103 3nw0_A Non-structural maintena 82.4 0.54 1.8E-05 44.5 2.2 42 375-416 180-229 (238)
104 2ww8_A RRGA, cell WALL surface 78.1 6.5 0.00022 43.9 9.4 125 99-236 225-393 (893)
105 2iue_A Pactolus I-domain; memb 73.9 4.6 0.00016 37.5 5.8 109 99-236 4-119 (212)
106 3rag_A Uncharacterized protein 68.9 3.1 0.00011 39.5 3.4 42 221-274 9-50 (242)
107 1z2q_A LM5-1; membrane protein 64.7 7.7 0.00026 30.5 4.4 37 367-403 13-54 (84)
108 1x4u_A Zinc finger, FYVE domai 56.8 8.2 0.00028 30.3 3.3 36 367-402 6-46 (84)
109 3t7l_A Zinc finger FYVE domain 56.7 7.7 0.00026 31.0 3.1 36 368-403 13-53 (90)
110 1z60_A TFIIH basal transcripti 49.8 8.9 0.0003 28.6 2.3 35 376-410 16-58 (59)
111 1joc_A EEA1, early endosomal a 48.1 9.9 0.00034 32.2 2.6 35 369-403 63-102 (125)
112 2yw8_A RUN and FYVE domain-con 46.6 10 0.00035 29.6 2.3 36 368-403 12-52 (82)
113 1weo_A Cellulose synthase, cat 44.2 21 0.00072 28.9 3.8 43 374-416 15-70 (93)
114 2k16_A Transcription initiatio 44.2 10 0.00035 28.9 1.9 45 372-416 15-71 (75)
115 3mpx_A FYVE, rhogef and PH dom 42.4 5.3 0.00018 39.9 0.0 48 367-414 367-430 (434)
116 3fcs_B Integrin beta-3; beta p 37.3 30 0.001 37.5 4.9 49 186-234 200-255 (690)
117 2jne_A Hypothetical protein YF 36.8 6.7 0.00023 32.3 -0.2 39 374-415 31-72 (101)
118 1wfk_A Zinc finger, FYVE domai 34.8 21 0.00073 28.3 2.5 31 373-403 7-42 (88)
119 1x64_A Alpha-actinin-2 associa 34.1 68 0.0023 24.5 5.3 39 373-415 23-62 (89)
120 3zyq_A Hepatocyte growth facto 34.1 50 0.0017 30.4 5.3 28 375-402 164-196 (226)
121 1y02_A CARP2, FYVE-ring finger 33.1 18 0.0006 30.7 1.8 40 373-412 17-65 (120)
122 2d8v_A Zinc finger FYVE domain 32.9 16 0.00055 27.9 1.3 32 372-403 5-37 (67)
123 2fiy_A Protein FDHE homolog; F 29.6 23 0.00077 34.7 2.2 41 373-413 180-231 (309)
124 1weu_A Inhibitor of growth fam 27.9 2.3E+02 0.0078 22.5 7.7 41 373-414 34-86 (91)
125 1wil_A KIAA1045 protein; ring 27.8 42 0.0014 26.9 3.0 31 373-403 13-46 (89)
126 2jmo_A Parkin; IBR, E3 ligase, 27.6 22 0.00076 27.5 1.4 22 391-413 55-76 (80)
127 1dvp_A HRS, hepatocyte growth 27.6 43 0.0015 30.5 3.6 29 375-403 161-194 (220)
128 1vfy_A Phosphatidylinositol-3- 25.8 34 0.0012 25.9 2.2 27 376-402 12-43 (73)
129 3otr_A Enolase; structural gen 24.8 1.2E+02 0.0041 31.2 6.6 148 80-267 227-381 (452)
130 1wfl_A Zinc finger protein 216 23.7 1.1E+02 0.0036 23.9 4.5 27 374-400 24-52 (74)
131 1wd2_A Ariadne-1 protein homol 23.4 29 0.00099 25.6 1.3 30 375-404 6-44 (60)
132 3i2d_A E3 SUMO-protein ligase 23.4 36 0.0012 34.2 2.4 43 373-415 247-299 (371)
133 1wfp_A Zinc finger (AN1-like) 21.1 1E+02 0.0035 24.0 4.0 28 373-400 23-52 (74)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=7.6e-11 Score=91.72 Aligned_cols=51 Identities=24% Similarity=0.664 Sum_probs=45.9
Q ss_pred CCcCCcccccccccccc-cccCCCc-cchhhhhcCCCCCCccccccCccccCC
Q 042398 372 VAETQACPICLTNAKDL-AFGCGHM-TCRECGSRVSNCPICRQRITNRLRLFA 422 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~v-~l~CGH~-fC~~Ci~~~~~CP~CR~~i~~~i~vy~ 422 (422)
..+...|+||++...++ .+||||. +|..|+.....||+||.+|..++++|.
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSG 64 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCCS
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEeec
Confidence 34568999999999995 5599999 999999999999999999999999984
No 2
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.02 E-value=5.4e-11 Score=93.60 Aligned_cols=50 Identities=32% Similarity=0.887 Sum_probs=45.6
Q ss_pred CCcCCccccccccccc-ccccCCCc-cchhhhhcCCCCCCccccccCccccC
Q 042398 372 VAETQACPICLTNAKD-LAFGCGHM-TCRECGSRVSNCPICRQRITNRLRLF 421 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~-v~l~CGH~-fC~~Ci~~~~~CP~CR~~i~~~i~vy 421 (422)
++++..|+||++.+.+ +.++|||. ||..|+..+..||+||.++..++++|
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 72 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIL 72 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECB
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEe
Confidence 4566899999999999 55699999 99999999999999999999999987
No 3
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=9.8e-11 Score=92.17 Aligned_cols=50 Identities=34% Similarity=0.920 Sum_probs=45.1
Q ss_pred CCcCCccccccccccc-ccccCCCc-cchhhhhcCCCCCCccccccCccccC
Q 042398 372 VAETQACPICLTNAKD-LAFGCGHM-TCRECGSRVSNCPICRQRITNRLRLF 421 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~-v~l~CGH~-fC~~Ci~~~~~CP~CR~~i~~~i~vy 421 (422)
+++...|+||++.+.+ +.++|||. ||..|+.....||+||.++..++++|
T Consensus 22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 73 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIF 73 (75)
T ss_dssp HHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCC
T ss_pred CCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEe
Confidence 3456799999999999 45699999 99999999999999999999999988
No 4
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.91 E-value=2.4e-10 Score=91.38 Aligned_cols=49 Identities=27% Similarity=0.829 Sum_probs=44.5
Q ss_pred CcCCcccccccccccc-cccCCCc-cchhhhhcCCCCCCccccccCccccC
Q 042398 373 AETQACPICLTNAKDL-AFGCGHM-TCRECGSRVSNCPICRQRITNRLRLF 421 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~v-~l~CGH~-fC~~Ci~~~~~CP~CR~~i~~~i~vy 421 (422)
++...|+||++...++ .+||||. ||..|+..+..||+||.++...+++|
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 66 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVY 66 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECB
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEE
Confidence 4567999999999994 5599999 89999999999999999999999887
No 5
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=9.9e-10 Score=85.10 Aligned_cols=46 Identities=30% Similarity=0.788 Sum_probs=39.9
Q ss_pred CCCcCCccccccccccc-ccccCCCccchhhhhcC----CCCCCccccccC
Q 042398 371 PVAETQACPICLTNAKD-LAFGCGHMTCRECGSRV----SNCPICRQRITN 416 (422)
Q Consensus 371 ~~~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~ 416 (422)
+..+...|+||++.+.+ +.++|||.||..|+..| ..||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 35667899999999999 66799999999999976 579999999864
No 6
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.86 E-value=1.7e-10 Score=88.48 Aligned_cols=52 Identities=29% Similarity=0.743 Sum_probs=44.1
Q ss_pred CCCcCCccccccccccc-ccc--cCCCc-cchhhhhcC----CCCCCccccccCccccCC
Q 042398 371 PVAETQACPICLTNAKD-LAF--GCGHM-TCRECGSRV----SNCPICRQRITNRLRLFA 422 (422)
Q Consensus 371 ~~~e~~~CpIC~~~~~~-v~l--~CGH~-fC~~Ci~~~----~~CP~CR~~i~~~i~vy~ 422 (422)
+..++..|+||++..++ +.+ ||||. +|..|+..+ ..||+||+++...+++|.
T Consensus 4 ~~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~ 63 (64)
T 2vje_A 4 PLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYF 63 (64)
T ss_dssp -CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEEC
T ss_pred CCCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeec
Confidence 35577899999999999 444 99999 799999976 469999999999999883
No 7
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=2.3e-09 Score=82.91 Aligned_cols=47 Identities=30% Similarity=0.899 Sum_probs=40.2
Q ss_pred CCCCcCCccccccccccc-ccccCCCccchhhhhcCC-------CCCCccccccC
Q 042398 370 TPVAETQACPICLTNAKD-LAFGCGHMTCRECGSRVS-------NCPICRQRITN 416 (422)
Q Consensus 370 ~~~~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~~-------~CP~CR~~i~~ 416 (422)
..+.+...|+||++.+.+ +.++|||.||..|+..+. .||+||..+..
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 346778899999999999 567999999999999653 69999999864
No 8
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=2.3e-09 Score=83.19 Aligned_cols=48 Identities=25% Similarity=0.587 Sum_probs=41.2
Q ss_pred CCCCcCCccccccccccc-ccc-cCCCccchhhhhcC----CCCCCccccccCc
Q 042398 370 TPVAETQACPICLTNAKD-LAF-GCGHMTCRECGSRV----SNCPICRQRITNR 417 (422)
Q Consensus 370 ~~~~e~~~CpIC~~~~~~-v~l-~CGH~fC~~Ci~~~----~~CP~CR~~i~~~ 417 (422)
+.+++...|+||++.+.+ +.+ +|||.||..|+..+ ..||+||..+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 346778999999999998 555 99999999999865 6899999998764
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=1.8e-09 Score=82.24 Aligned_cols=46 Identities=33% Similarity=0.913 Sum_probs=38.9
Q ss_pred CCCcCCccccccccccc--------ccccCCCccchhhhhcC----CCCCCccccccC
Q 042398 371 PVAETQACPICLTNAKD--------LAFGCGHMTCRECGSRV----SNCPICRQRITN 416 (422)
Q Consensus 371 ~~~e~~~CpIC~~~~~~--------v~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~ 416 (422)
...+...|+||++.+.+ +.++|||.||..|+..| ..||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 35677899999998876 34599999999999976 689999998865
No 10
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.81 E-value=3.9e-10 Score=86.18 Aligned_cols=49 Identities=31% Similarity=0.836 Sum_probs=43.0
Q ss_pred CcCCccccccccccc-ccc--cCCCc-cchhhhhcCC----CCCCccccccCccccC
Q 042398 373 AETQACPICLTNAKD-LAF--GCGHM-TCRECGSRVS----NCPICRQRITNRLRLF 421 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~-v~l--~CGH~-fC~~Ci~~~~----~CP~CR~~i~~~i~vy 421 (422)
.....|+||++..++ +++ ||||. +|..|+.++. .||+||+++...+++|
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 61 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVF 61 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEE
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEe
Confidence 445789999999998 444 99999 8999999774 8999999999999988
No 11
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.79 E-value=3.1e-09 Score=83.15 Aligned_cols=48 Identities=29% Similarity=0.729 Sum_probs=40.4
Q ss_pred CCCCCcCCccccccccccc-cccc-CCCccchhhhhcC------CCCCCccccccC
Q 042398 369 STPVAETQACPICLTNAKD-LAFG-CGHMTCRECGSRV------SNCPICRQRITN 416 (422)
Q Consensus 369 ~~~~~e~~~CpIC~~~~~~-v~l~-CGH~fC~~Ci~~~------~~CP~CR~~i~~ 416 (422)
...+.+...|+||++.+.+ ++++ |||.||..|+..+ ..||+||.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 4446788999999999999 6678 9999999999865 479999998643
No 12
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=4.4e-09 Score=80.16 Aligned_cols=47 Identities=23% Similarity=0.596 Sum_probs=40.1
Q ss_pred CCCcCCccccccccccc-ccccCCCccchhhhhcC-----CCCCCccccccCc
Q 042398 371 PVAETQACPICLTNAKD-LAFGCGHMTCRECGSRV-----SNCPICRQRITNR 417 (422)
Q Consensus 371 ~~~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~-----~~CP~CR~~i~~~ 417 (422)
.+.+...|+||++.+.+ +.++|||.||..|+..+ ..||+||.++...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 35677899999999999 56799999999999954 4799999998653
No 13
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=4.5e-09 Score=83.31 Aligned_cols=46 Identities=24% Similarity=0.521 Sum_probs=39.6
Q ss_pred CCCcCCccccccccccc-ccccCCCccchhhhhcC----CCCCCccccccC
Q 042398 371 PVAETQACPICLTNAKD-LAFGCGHMTCRECGSRV----SNCPICRQRITN 416 (422)
Q Consensus 371 ~~~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~ 416 (422)
...+...|+||++.+.+ ++++|||.||..|+..+ ..||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGG 61 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCccccc
Confidence 35667899999999999 56799999999999876 579999999863
No 14
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=2.7e-09 Score=82.08 Aligned_cols=50 Identities=32% Similarity=0.782 Sum_probs=42.7
Q ss_pred CCcCCcccccccccccccccCCCccchhhhhcC----CCCCCccccccCccccC
Q 042398 372 VAETQACPICLTNAKDLAFGCGHMTCRECGSRV----SNCPICRQRITNRLRLF 421 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~v~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~~i~vy 421 (422)
..+...|+||++.+.++.++|||.||..|+..| ..||+||.++.....+|
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 12 LTDEEECCICMDGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCCSSSCCSCCSEEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCCeeCCcCccCcccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 566789999999999866799999999999976 57999999998765544
No 15
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.75 E-value=5.8e-09 Score=81.69 Aligned_cols=47 Identities=38% Similarity=0.869 Sum_probs=40.1
Q ss_pred CCCCcCCccccccccccc-ccccCCCccchhhhhcC-----------CCCCCccccccC
Q 042398 370 TPVAETQACPICLTNAKD-LAFGCGHMTCRECGSRV-----------SNCPICRQRITN 416 (422)
Q Consensus 370 ~~~~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~-----------~~CP~CR~~i~~ 416 (422)
..+.+...|+||++.+.+ +.++|||.||..|+..+ ..||+||..+..
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 346778999999999999 66799999999999953 469999999864
No 16
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.74 E-value=5.5e-09 Score=83.40 Aligned_cols=51 Identities=29% Similarity=0.809 Sum_probs=40.1
Q ss_pred CCCcCCcccccccccc--cc-ccc--CCCccchhhhhcC-----CCCCCccccccCccccC
Q 042398 371 PVAETQACPICLTNAK--DL-AFG--CGHMTCRECGSRV-----SNCPICRQRITNRLRLF 421 (422)
Q Consensus 371 ~~~e~~~CpIC~~~~~--~v-~l~--CGH~fC~~Ci~~~-----~~CP~CR~~i~~~i~vy 421 (422)
.++++..|+||++.+. ++ .++ |||.||..|+.++ ..||.||+++.....+|
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~ 67 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVY 67 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence 3678899999999874 33 334 9999999999864 47999999998765444
No 17
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.73 E-value=1.4e-09 Score=95.01 Aligned_cols=45 Identities=29% Similarity=0.733 Sum_probs=38.8
Q ss_pred CcCCccccccccccc-ccccCCCccchhhhhcC----CCCCCccccccCc
Q 042398 373 AETQACPICLTNAKD-LAFGCGHMTCRECGSRV----SNCPICRQRITNR 417 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~~ 417 (422)
+++..|+||++.+.+ ++++|||.||..|+..| ..||+||.++...
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 456789999999999 56799999999999965 5799999998654
No 18
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.73 E-value=1e-08 Score=80.84 Aligned_cols=47 Identities=36% Similarity=0.817 Sum_probs=40.1
Q ss_pred CCCCcCCccccccccccc-ccccCCCccchhhhhc----------CCCCCCccccccC
Q 042398 370 TPVAETQACPICLTNAKD-LAFGCGHMTCRECGSR----------VSNCPICRQRITN 416 (422)
Q Consensus 370 ~~~~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~----------~~~CP~CR~~i~~ 416 (422)
+.+.+...|+||++.+.+ +.++|||.||..|+.. ...||+||..+..
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 336778999999999999 6679999999999985 3579999999864
No 19
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.71 E-value=7.1e-09 Score=77.07 Aligned_cols=45 Identities=27% Similarity=0.522 Sum_probs=38.9
Q ss_pred CCcCCccccccccccc-ccccCCCccchhhhhcC-CCCCCccccccC
Q 042398 372 VAETQACPICLTNAKD-LAFGCGHMTCRECGSRV-SNCPICRQRITN 416 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~-~~CP~CR~~i~~ 416 (422)
..+...|+||++.+.+ ++++|||.||..|+..+ ..||+||..+..
T Consensus 3 e~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred cccCCCceEeCCccCCeEEcCCCCcccHHHHccCCCCCCcCCcEeec
Confidence 3567899999999999 67799999999999876 589999998764
No 20
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=1.3e-08 Score=80.16 Aligned_cols=47 Identities=38% Similarity=0.883 Sum_probs=40.2
Q ss_pred CCCCcCCccccccccccc-ccccCCCccchhhhhc----------CCCCCCccccccC
Q 042398 370 TPVAETQACPICLTNAKD-LAFGCGHMTCRECGSR----------VSNCPICRQRITN 416 (422)
Q Consensus 370 ~~~~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~----------~~~CP~CR~~i~~ 416 (422)
..+.+...|+||++.+.+ +.++|||.||..|+.. ...||+||..+..
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 346778999999999999 5679999999999985 3689999999864
No 21
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.70 E-value=5.4e-09 Score=84.56 Aligned_cols=46 Identities=30% Similarity=0.751 Sum_probs=39.5
Q ss_pred CCCCcCCccccccccccc-cccc-CCCccchhhhhcC------CCCCCcccccc
Q 042398 370 TPVAETQACPICLTNAKD-LAFG-CGHMTCRECGSRV------SNCPICRQRIT 415 (422)
Q Consensus 370 ~~~~e~~~CpIC~~~~~~-v~l~-CGH~fC~~Ci~~~------~~CP~CR~~i~ 415 (422)
..+.+.+.|+||++.+.+ ++++ |||.||..|+..+ ..||+||..+.
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 346788999999999999 6678 9999999999855 48999999873
No 22
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.70 E-value=4.9e-09 Score=88.45 Aligned_cols=47 Identities=28% Similarity=0.782 Sum_probs=40.3
Q ss_pred CCCCcCCccccccccccc-ccccCCCccchhhhhcC-----CCCCCccccccC
Q 042398 370 TPVAETQACPICLTNAKD-LAFGCGHMTCRECGSRV-----SNCPICRQRITN 416 (422)
Q Consensus 370 ~~~~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~-----~~CP~CR~~i~~ 416 (422)
....++..|+||++.+.+ ++++|||.||..|+..+ ..||+||..+..
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred cCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 346778999999999999 66799999999999976 379999998753
No 23
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.69 E-value=8.2e-09 Score=80.97 Aligned_cols=47 Identities=26% Similarity=0.662 Sum_probs=38.9
Q ss_pred CCCcCCccccccccccc----ccccCCCccchhhhhcC----CCCCCccccccCc
Q 042398 371 PVAETQACPICLTNAKD----LAFGCGHMTCRECGSRV----SNCPICRQRITNR 417 (422)
Q Consensus 371 ~~~e~~~CpIC~~~~~~----v~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~~ 417 (422)
...+...|+||++.+.+ ..++|||.||..|+.+| ..||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 35677899999998875 24599999999999965 6799999998654
No 24
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.69 E-value=4.5e-09 Score=80.68 Aligned_cols=45 Identities=33% Similarity=0.940 Sum_probs=38.1
Q ss_pred CCcCCccccccccccc--------ccccCCCccchhhhhcC----CCCCCccccccC
Q 042398 372 VAETQACPICLTNAKD--------LAFGCGHMTCRECGSRV----SNCPICRQRITN 416 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~--------v~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~ 416 (422)
..++..|+||++.+.+ +.++|||.||..|+..| ..||+||..+..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 4567899999999876 35599999999999865 689999999864
No 25
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=1.1e-08 Score=81.53 Aligned_cols=48 Identities=29% Similarity=0.805 Sum_probs=39.7
Q ss_pred CCCCCcCCccccccccccc----c-cccCCCccchhhhhcC-------CCCCCccccccC
Q 042398 369 STPVAETQACPICLTNAKD----L-AFGCGHMTCRECGSRV-------SNCPICRQRITN 416 (422)
Q Consensus 369 ~~~~~e~~~CpIC~~~~~~----v-~l~CGH~fC~~Ci~~~-------~~CP~CR~~i~~ 416 (422)
...+.+...|+||++.+.+ . .++|||.||..|+..+ ..||+||..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3346778899999999887 4 4599999999999965 579999998753
No 26
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.66 E-value=4.6e-09 Score=105.66 Aligned_cols=50 Identities=34% Similarity=0.963 Sum_probs=45.9
Q ss_pred CCcCCccccccccccc-ccccCCCc-cchhhhhcCCCCCCccccccCccccC
Q 042398 372 VAETQACPICLTNAKD-LAFGCGHM-TCRECGSRVSNCPICRQRITNRLRLF 421 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~-v~l~CGH~-fC~~Ci~~~~~CP~CR~~i~~~i~vy 421 (422)
++++..|+||++.+.+ +.++|||. ||..|+..+..||+||.++..++++|
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~ 343 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTF 343 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEee
Confidence 4567899999999999 45699999 99999999999999999999999998
No 27
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.66 E-value=6.6e-09 Score=81.52 Aligned_cols=45 Identities=24% Similarity=0.428 Sum_probs=39.1
Q ss_pred CCcCCccccccccccc-ccccCCCccchhhhhcC-----CCCCCccccccC
Q 042398 372 VAETQACPICLTNAKD-LAFGCGHMTCRECGSRV-----SNCPICRQRITN 416 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~-----~~CP~CR~~i~~ 416 (422)
+.+.+.|+||++.+.+ ++++|||.||..|+..+ ..||+||.++..
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 5678999999999999 66799999999999854 569999999864
No 28
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.65 E-value=7.1e-09 Score=79.13 Aligned_cols=47 Identities=30% Similarity=0.815 Sum_probs=39.7
Q ss_pred cCCccccccccccc--ccccCCCccchhhhhcC----CCCCCccccccCcccc
Q 042398 374 ETQACPICLTNAKD--LAFGCGHMTCRECGSRV----SNCPICRQRITNRLRL 420 (422)
Q Consensus 374 e~~~CpIC~~~~~~--v~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~~i~v 420 (422)
+...|+||++.+.+ +.++|||.||..|+..| ..||+||.++...++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 56 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHT 56 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCEECC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhhhhc
Confidence 45789999999988 45699999999999865 6899999999876554
No 29
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=1.3e-08 Score=78.95 Aligned_cols=48 Identities=23% Similarity=0.541 Sum_probs=39.5
Q ss_pred CCcCCccccccccccc----ccccCCCccchhhhhcC----CCCCCccccccCccc
Q 042398 372 VAETQACPICLTNAKD----LAFGCGHMTCRECGSRV----SNCPICRQRITNRLR 419 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~----v~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~~i~ 419 (422)
..+...|+||++.+.+ ..++|||.||..|+..| ..||+||.++.....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 5667899999999876 23499999999999976 679999999876543
No 30
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.62 E-value=8e-09 Score=77.41 Aligned_cols=48 Identities=29% Similarity=0.893 Sum_probs=39.0
Q ss_pred cCCccccccccccc--------ccccCCCccchhhhhcC----CCCCCccccccC--ccccC
Q 042398 374 ETQACPICLTNAKD--------LAFGCGHMTCRECGSRV----SNCPICRQRITN--RLRLF 421 (422)
Q Consensus 374 e~~~CpIC~~~~~~--------v~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~--~i~vy 421 (422)
+...|+||++.+.+ +.++|||.||..|+.++ ..||+||.++.. ..++|
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 46789999998876 34599999999999866 589999999874 44554
No 31
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.60 E-value=8.2e-09 Score=88.33 Aligned_cols=45 Identities=31% Similarity=0.673 Sum_probs=39.0
Q ss_pred CCcCCccccccccccc-ccccCCCccchhhhhcC-----CCCCCccccccC
Q 042398 372 VAETQACPICLTNAKD-LAFGCGHMTCRECGSRV-----SNCPICRQRITN 416 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~-----~~CP~CR~~i~~ 416 (422)
+.+...|+||++.+.+ ++++|||.||..|+..+ ..||+||.++..
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4567899999999999 66799999999999854 489999999875
No 32
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.60 E-value=2.6e-08 Score=76.22 Aligned_cols=48 Identities=29% Similarity=0.668 Sum_probs=39.2
Q ss_pred CCcCCccccccccccc----ccccCCCccchhhhhcC----CCCCCccccccCccc
Q 042398 372 VAETQACPICLTNAKD----LAFGCGHMTCRECGSRV----SNCPICRQRITNRLR 419 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~----v~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~~i~ 419 (422)
..+...|+||++.+.. +.++|||.||..|+..| ..||+||..+...+.
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 4566799999998753 45699999999999966 679999999876553
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=3e-08 Score=74.68 Aligned_cols=41 Identities=34% Similarity=0.954 Sum_probs=35.1
Q ss_pred CCCCcCCccccccccccc-ccccCCCccchhhhhcC-------CCCCCc
Q 042398 370 TPVAETQACPICLTNAKD-LAFGCGHMTCRECGSRV-------SNCPIC 410 (422)
Q Consensus 370 ~~~~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~-------~~CP~C 410 (422)
..++++..|+||++.+.+ ++++|||.||..|+.++ ..||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 346778999999999999 56799999999999865 379998
No 34
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=3.6e-08 Score=72.56 Aligned_cols=40 Identities=33% Similarity=0.908 Sum_probs=34.6
Q ss_pred CCCcCCccccccccccc-ccccCCCccchhhhhcC-------CCCCCc
Q 042398 371 PVAETQACPICLTNAKD-LAFGCGHMTCRECGSRV-------SNCPIC 410 (422)
Q Consensus 371 ~~~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~-------~~CP~C 410 (422)
.+.+...|+||++.+.+ +.++|||.||..|+..+ ..||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 36678899999999999 66799999999999865 569988
No 35
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.58 E-value=7.4e-09 Score=85.72 Aligned_cols=45 Identities=31% Similarity=0.711 Sum_probs=39.6
Q ss_pred CCcCCccccccccccc-cc-ccCCCccchhhhhcC-----CCCCCccccccC
Q 042398 372 VAETQACPICLTNAKD-LA-FGCGHMTCRECGSRV-----SNCPICRQRITN 416 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~-v~-l~CGH~fC~~Ci~~~-----~~CP~CR~~i~~ 416 (422)
+.+...|+||++.+.+ +. ++|||.||..|+..| ..||+||.++..
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 5678999999999999 56 799999999999965 589999999854
No 36
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.54 E-value=1.9e-08 Score=76.32 Aligned_cols=43 Identities=33% Similarity=0.818 Sum_probs=35.8
Q ss_pred cCCccccccc-ccccc-----cccCCCccchhhhhcC-----CCCCCccccccC
Q 042398 374 ETQACPICLT-NAKDL-----AFGCGHMTCRECGSRV-----SNCPICRQRITN 416 (422)
Q Consensus 374 e~~~CpIC~~-~~~~v-----~l~CGH~fC~~Ci~~~-----~~CP~CR~~i~~ 416 (422)
++..|+||++ .+.+. +++|||.||..|+.++ ..||+||.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 4578999999 77663 4599999999999866 579999999864
No 37
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.54 E-value=3.4e-08 Score=72.16 Aligned_cols=44 Identities=32% Similarity=0.761 Sum_probs=36.4
Q ss_pred CCcCCccccccccccc----cccc-CCCccchhhhhcC----CCCCCcccccc
Q 042398 372 VAETQACPICLTNAKD----LAFG-CGHMTCRECGSRV----SNCPICRQRIT 415 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~----v~l~-CGH~fC~~Ci~~~----~~CP~CR~~i~ 415 (422)
+++...|+||++.+.+ +.++ |||.||..|+..| ..||+||..+.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3567899999999877 3455 9999999999976 57999998764
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.52 E-value=2e-08 Score=83.86 Aligned_cols=45 Identities=27% Similarity=0.631 Sum_probs=39.5
Q ss_pred CCcCCccccccccccc-ccc-cCCCccchhhhhcC----CCCCCccccccC
Q 042398 372 VAETQACPICLTNAKD-LAF-GCGHMTCRECGSRV----SNCPICRQRITN 416 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~-v~l-~CGH~fC~~Ci~~~----~~CP~CR~~i~~ 416 (422)
+.+...|+||++.+.+ +.+ +|||.||..|+..+ ..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 4677899999999999 566 99999999999866 679999999875
No 39
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.49 E-value=3.1e-08 Score=84.02 Aligned_cols=45 Identities=24% Similarity=0.719 Sum_probs=39.7
Q ss_pred CCcCCccccccccccc-ccc-cCCCccchhhhhcC--CCCCCccccccC
Q 042398 372 VAETQACPICLTNAKD-LAF-GCGHMTCRECGSRV--SNCPICRQRITN 416 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~-v~l-~CGH~fC~~Ci~~~--~~CP~CR~~i~~ 416 (422)
+.+.+.|+||++.+.+ +++ +|||.||..|+..+ ..||+||.++..
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWI 67 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSC
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCcc
Confidence 4678999999999999 677 99999999999987 579999999853
No 40
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.49 E-value=1.9e-08 Score=89.61 Aligned_cols=46 Identities=24% Similarity=0.650 Sum_probs=39.4
Q ss_pred CCcCCccccccccccc-ccccCCCccchhhhhcC-----CCCCCccccccCc
Q 042398 372 VAETQACPICLTNAKD-LAFGCGHMTCRECGSRV-----SNCPICRQRITNR 417 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~-----~~CP~CR~~i~~~ 417 (422)
+.+...|+||++.+.+ ++++|||.||..|+..+ ..||+||..+...
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4466899999999999 66799999999999865 3799999998754
No 41
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.48 E-value=3.5e-08 Score=76.96 Aligned_cols=45 Identities=24% Similarity=0.634 Sum_probs=37.6
Q ss_pred CCcCCccccccccccc----ccccCCCccchhhhhcC----CCCCCccccccC
Q 042398 372 VAETQACPICLTNAKD----LAFGCGHMTCRECGSRV----SNCPICRQRITN 416 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~----v~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~ 416 (422)
..+...|+||++.+.+ ..++|||.||..|+..| ..||+||..+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 4566799999998776 34699999999999976 689999998864
No 42
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.48 E-value=3.9e-08 Score=79.94 Aligned_cols=46 Identities=28% Similarity=0.658 Sum_probs=38.0
Q ss_pred CCcCCccccccccccc---c-cccCCCccchhhhhcC----CCCCCccccccCc
Q 042398 372 VAETQACPICLTNAKD---L-AFGCGHMTCRECGSRV----SNCPICRQRITNR 417 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~---v-~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~~ 417 (422)
..++..|+||++.+.. + .++|||.||..|+..| ..||+||..+...
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 90 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPP 90 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSCC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCCC
Confidence 4567799999988766 3 4699999999999976 6799999988653
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.47 E-value=3.6e-08 Score=82.18 Aligned_cols=44 Identities=36% Similarity=0.941 Sum_probs=37.7
Q ss_pred CcCCccccccccccc-ccccCCCccchhhhhcC-------CCCCCccccccC
Q 042398 373 AETQACPICLTNAKD-LAFGCGHMTCRECGSRV-------SNCPICRQRITN 416 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~-------~~CP~CR~~i~~ 416 (422)
.+...|+||++.+.+ +.++|||.||..|+..+ ..||+||..+..
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 456799999999999 56799999999999864 279999998864
No 44
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.47 E-value=2.9e-08 Score=81.54 Aligned_cols=45 Identities=24% Similarity=0.676 Sum_probs=38.6
Q ss_pred CCcCCccccccccccc-ccc-cCCCccchhhhhcC----CCCCCccccccC
Q 042398 372 VAETQACPICLTNAKD-LAF-GCGHMTCRECGSRV----SNCPICRQRITN 416 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~-v~l-~CGH~fC~~Ci~~~----~~CP~CR~~i~~ 416 (422)
+.+...|+||++.+.+ +.+ +|||.||..|+..+ ..||+||..+..
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 4567899999999999 556 89999999999865 579999998864
No 45
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.46 E-value=6.5e-08 Score=78.05 Aligned_cols=46 Identities=22% Similarity=0.202 Sum_probs=40.2
Q ss_pred CCcCCccccccccccc-ccccCCCccchhhhhcC----CCCCCccccccCc
Q 042398 372 VAETQACPICLTNAKD-LAFGCGHMTCRECGSRV----SNCPICRQRITNR 417 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~~ 417 (422)
..+.+.||||++.+.+ ++++|||.||..|+..+ ..||+||.++...
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 5678999999999999 67799999999999865 6899999998653
No 46
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.45 E-value=1.2e-07 Score=78.58 Aligned_cols=46 Identities=20% Similarity=0.127 Sum_probs=40.1
Q ss_pred CCcCCccccccccccc-ccccCC-CccchhhhhcC----CCCCCccccccCc
Q 042398 372 VAETQACPICLTNAKD-LAFGCG-HMTCRECGSRV----SNCPICRQRITNR 417 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~-v~l~CG-H~fC~~Ci~~~----~~CP~CR~~i~~~ 417 (422)
+.+++.||||++.+++ ++++|| |.||..|+..+ ..||+||.++...
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred CcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 5678999999999999 667999 99999999865 5799999998753
No 47
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.45 E-value=5.7e-08 Score=70.84 Aligned_cols=42 Identities=31% Similarity=0.861 Sum_probs=35.4
Q ss_pred cCCccccccccccc-----ccccCCCccchhhhhcC----CCCCCcccccc
Q 042398 374 ETQACPICLTNAKD-----LAFGCGHMTCRECGSRV----SNCPICRQRIT 415 (422)
Q Consensus 374 e~~~CpIC~~~~~~-----v~l~CGH~fC~~Ci~~~----~~CP~CR~~i~ 415 (422)
+...|+||++.+.+ +.++|||.||..|+..| ..||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45789999998854 34599999999999976 68999999875
No 48
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.44 E-value=3.5e-08 Score=88.40 Aligned_cols=45 Identities=31% Similarity=0.824 Sum_probs=38.6
Q ss_pred CCcCCccccccccccc-ccc-cCCCccchhhhhcC-----CCCCCccccccC
Q 042398 372 VAETQACPICLTNAKD-LAF-GCGHMTCRECGSRV-----SNCPICRQRITN 416 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~-v~l-~CGH~fC~~Ci~~~-----~~CP~CR~~i~~ 416 (422)
+.+...|+||++.+.+ +.+ +|||.||..|+..| ..||+||.++..
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 5667899999999999 555 99999999999865 469999999854
No 49
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.43 E-value=5.9e-08 Score=82.41 Aligned_cols=46 Identities=28% Similarity=0.801 Sum_probs=40.3
Q ss_pred CCCcCCccccccccccc-ccccCCCccchhhhhcC-----CCCCCccccccC
Q 042398 371 PVAETQACPICLTNAKD-LAFGCGHMTCRECGSRV-----SNCPICRQRITN 416 (422)
Q Consensus 371 ~~~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~-----~~CP~CR~~i~~ 416 (422)
.+.+...|+||++.+.+ +.++|||.||..|+..+ ..||+||.++..
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 46778999999999999 66799999999999865 489999999865
No 50
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.43 E-value=1.8e-08 Score=88.85 Aligned_cols=44 Identities=23% Similarity=0.587 Sum_probs=38.7
Q ss_pred CCCcCCccccccccccc-ccccCCCccchhhhhcC-----CCCCCccccc
Q 042398 371 PVAETQACPICLTNAKD-LAFGCGHMTCRECGSRV-----SNCPICRQRI 414 (422)
Q Consensus 371 ~~~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~-----~~CP~CR~~i 414 (422)
.+++.+.|+||++.+.+ +.++|||.||..|+..+ ..||+||.++
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 46788999999999999 66799999999999976 3799999975
No 51
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.40 E-value=7.6e-08 Score=80.18 Aligned_cols=45 Identities=22% Similarity=0.225 Sum_probs=39.6
Q ss_pred CCcCCccccccccccc-ccccCCCccchhhhhcC----CCCCCccccccC
Q 042398 372 VAETQACPICLTNAKD-LAFGCGHMTCRECGSRV----SNCPICRQRITN 416 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~ 416 (422)
+.+.+.||||++.+.+ ++++|||.||..|+..+ ..||+||.++..
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred CcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 5677999999999999 66799999999999865 579999999864
No 52
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.34 E-value=9.3e-08 Score=80.23 Aligned_cols=43 Identities=21% Similarity=0.484 Sum_probs=34.7
Q ss_pred CCccccccccccc-c------------------cccCCCccchhhhhcC---------CCCCCccccccCc
Q 042398 375 TQACPICLTNAKD-L------------------AFGCGHMTCRECGSRV---------SNCPICRQRITNR 417 (422)
Q Consensus 375 ~~~CpIC~~~~~~-v------------------~l~CGH~fC~~Ci~~~---------~~CP~CR~~i~~~ 417 (422)
+..|+||++.+.+ . .++|||.||..|+..| ..||+||..+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3589999999754 1 4699999999999865 3799999988543
No 53
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.32 E-value=2.1e-07 Score=88.60 Aligned_cols=43 Identities=14% Similarity=0.075 Sum_probs=37.4
Q ss_pred cCCccccccccccc-ccccCCCccchhhhhcC-----CCCCCccccccC
Q 042398 374 ETQACPICLTNAKD-LAFGCGHMTCRECGSRV-----SNCPICRQRITN 416 (422)
Q Consensus 374 e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~-----~~CP~CR~~i~~ 416 (422)
+.+.||||++.+.+ ++++|||+||..|+..+ ..||+||.+++.
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 46799999999999 66799999999999854 349999999864
No 54
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.30 E-value=2.4e-06 Score=81.69 Aligned_cols=151 Identities=13% Similarity=0.216 Sum_probs=103.0
Q ss_pred cccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHH-HHHHHHHhccccccC---CCCCcceeeecCCCCCCCCCcccC
Q 042398 98 SSNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPY-EKAITIIGKTLAPFD---EDNLIPCFGFGDATTHDQEVFSFH 173 (422)
Q Consensus 98 ~~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y-~~AI~~ig~il~~yD---~D~~ip~~GFGa~~~~~~~vf~~~ 173 (422)
.+++++.||-|+|.+. ..+ +++...+-.++..++ ++-.+-++.|+.... .+|+|+
T Consensus 18 ~~DivfvlD~SgSM~~------------------~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~---~~~~l~ 76 (266)
T 4hqo_A 18 QVDLYLLVDGSGSIGY------------------PNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTT---ELIRLG 76 (266)
T ss_dssp CEEEEEEEECSTTTCH------------------HHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEE---EEECTT
T ss_pred ceeEEEEEECCCCcCh------------------hHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcc---eEEecC
Confidence 3789999999999852 223 356666666667776 566789999998632 245543
Q ss_pred CCCCCCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHc---CCceEEEEEEeCCcccccCCCCCCCCchhHHH
Q 042398 174 DDHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKS---GGQYHVLVIIADGQVTRSVNTGDGELSSQEQK 250 (422)
Q Consensus 174 ~~~~~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~---~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~ 250 (422)
... -...+.++++-...-......|-|+...-|+.|.+..... .+.-.++++||||..+| ...
T Consensus 77 ~~~--~~~~~~~~~~i~~l~~~~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~d------------~~~ 142 (266)
T 4hqo_A 77 SGQ--SIDKRQALSKVTELRKTYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNS------------KYR 142 (266)
T ss_dssp SHH--HHCHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCSC------------HHH
T ss_pred CCC--ccCHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCCC------------chH
Confidence 221 0124555554444322235679999999999998776654 23468999999999987 456
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCC-ccccccccC
Q 042398 251 TIKSIVAASSYPLSIVLVGVGDGP-WEDMQKFDD 283 (422)
Q Consensus 251 T~~aIv~AS~~PlSIiiVGVG~~~-f~~m~~LD~ 283 (422)
..+++..+.+..+.|..||||++. -+.|+.+-+
T Consensus 143 ~~~~a~~l~~~gi~i~~iGiG~~~~~~~L~~iA~ 176 (266)
T 4hqo_A 143 ALEVANKLKQRNVRLAVIGIGQGINHQFNRLIAG 176 (266)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSSCCHHHHHHHHT
T ss_pred HHHHHHHHHHCCCEEEEEecCcccCHHHHHHhhC
Confidence 777777787888999999999854 333455543
No 55
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.30 E-value=1.3e-07 Score=79.70 Aligned_cols=45 Identities=33% Similarity=0.694 Sum_probs=39.0
Q ss_pred CCcCCccccccccccc-ccccCCCccchhhhhcC-----CCCCCccccccC
Q 042398 372 VAETQACPICLTNAKD-LAFGCGHMTCRECGSRV-----SNCPICRQRITN 416 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~-----~~CP~CR~~i~~ 416 (422)
+.+...|+||++.+.+ +.++|||.||..|+..+ ..||+||.++..
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 5567899999999999 56799999999999854 579999999864
No 56
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.28 E-value=4.7e-06 Score=80.06 Aligned_cols=151 Identities=17% Similarity=0.204 Sum_probs=104.6
Q ss_pred cccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHH-HHHHHHHhccccccCC---CCCcceeeecCCCCCCCCCcccC
Q 042398 98 SSNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPY-EKAITIIGKTLAPFDE---DNLIPCFGFGDATTHDQEVFSFH 173 (422)
Q Consensus 98 ~~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y-~~AI~~ig~il~~yD~---D~~ip~~GFGa~~~~~~~vf~~~ 173 (422)
.+++++.||-|+|.+. ..+ +++...+..++..++. +-.+-++.|+.... .+|+++
T Consensus 21 ~~div~vlD~SgSM~~------------------~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~---~~~~l~ 79 (281)
T 4hqf_A 21 EVDLYLLMDGSGSIRR------------------HNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAR---EIIRLH 79 (281)
T ss_dssp CEEEEEEEECCCCSST------------------HHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEE---EEEEEC
T ss_pred ceeEEEEEeCCCCcCH------------------HHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCce---EEEEcc
Confidence 4889999999999852 123 5566666666666654 66799999987642 345554
Q ss_pred CCCCCCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcC---CceEEEEEEeCCcccccCCCCCCCCchhHHH
Q 042398 174 DDHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSG---GQYHVLVIIADGQVTRSVNTGDGELSSQEQK 250 (422)
Q Consensus 174 ~~~~~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~---~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~ 250 (422)
.... ...+.++++-...-......|-|+....|+.|.+.....+ +.-.++|+||||..+| ...
T Consensus 80 ~~~~--~~~~~l~~~i~~l~~~~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d------------~~~ 145 (281)
T 4hqf_A 80 SDAS--KNKEKALIIIKSLLSTNLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDS------------IQD 145 (281)
T ss_dssp SSCS--SCHHHHHHHHHHHHHTTGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSC------------HHH
T ss_pred ccCc--cCHHHHHHHHHHHhhccCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCC------------cHH
Confidence 3321 2345565554443334456899999999999987766542 2568899999999887 346
Q ss_pred HHHHHHHhcCCCeeEEEEecCCC-CccccccccC
Q 042398 251 TIKSIVAASSYPLSIVLVGVGDG-PWEDMQKFDD 283 (422)
Q Consensus 251 T~~aIv~AS~~PlSIiiVGVG~~-~f~~m~~LD~ 283 (422)
..+++..+...-+-|..||||++ +-+.|+.+-+
T Consensus 146 ~~~~~~~l~~~gv~i~~igiG~~~~~~~L~~iA~ 179 (281)
T 4hqf_A 146 SLKESRKLSDRGVKIAVFGIGQGINVAFNRFLVG 179 (281)
T ss_dssp HHHHHHHHHHTTCEEEEEEESSSCCHHHHHHHTT
T ss_pred HHHHHHHHHHCCCEEEEEeCCCccCHHHHHhhhC
Confidence 66777777778899999999995 5555666654
No 57
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.27 E-value=2.9e-07 Score=93.75 Aligned_cols=46 Identities=37% Similarity=0.792 Sum_probs=38.8
Q ss_pred CCccccccccccc-ccccCCCccchhhhhcC-----CCCCCccccccCcccc
Q 042398 375 TQACPICLTNAKD-LAFGCGHMTCRECGSRV-----SNCPICRQRITNRLRL 420 (422)
Q Consensus 375 ~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~-----~~CP~CR~~i~~~i~v 420 (422)
...|+||++...+ +.++|||.||..|+..+ ..||+||.++.....+
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence 4699999999999 55699999999999854 6899999999765433
No 58
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=5.7e-07 Score=71.63 Aligned_cols=45 Identities=29% Similarity=0.637 Sum_probs=35.0
Q ss_pred CCcCCccccccccccc--------------c-cc-cCCCccchhhhhcC----CCCCCccccccC
Q 042398 372 VAETQACPICLTNAKD--------------L-AF-GCGHMTCRECGSRV----SNCPICRQRITN 416 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~--------------v-~l-~CGH~fC~~Ci~~~----~~CP~CR~~i~~ 416 (422)
..++..|+||++.+.+ + ++ +|||.||..|+.++ ..||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred cCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 3456789999987743 2 44 59999999999965 579999998753
No 59
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.20 E-value=3.2e-07 Score=77.93 Aligned_cols=44 Identities=34% Similarity=0.975 Sum_probs=37.1
Q ss_pred CcCCccccccccccc--------ccccCCCccchhhhhcC----CCCCCccccccC
Q 042398 373 AETQACPICLTNAKD--------LAFGCGHMTCRECGSRV----SNCPICRQRITN 416 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~--------v~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~ 416 (422)
.+...|+||++.+.+ +.++|||.||..|+..+ ..||+||..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 456899999999876 34599999999999865 579999999864
No 60
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.17 E-value=2.2e-05 Score=69.58 Aligned_cols=148 Identities=14% Similarity=0.137 Sum_probs=94.8
Q ss_pred cccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCCCcceeeecCCCCCCCCCcccCCCCC
Q 042398 98 SSNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHT 177 (422)
Q Consensus 98 ~~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~ 177 (422)
.+++++.||-|+|.+. .+ ....+++..+..-+ ...+-.+-++.|+.... .++++..
T Consensus 7 ~~div~vlD~SgSM~~-----------~~-----~~~~~~~~~~~~~~--~~~~~~v~lv~f~~~~~---~~~~l~~--- 62 (185)
T 3n2n_F 7 GFDLYFILDKSGSVLH-----------HW-----NEIYYFVEQLAHKF--ISPQLRMSFIVFSTRGT---TLMKLTE--- 62 (185)
T ss_dssp EEEEEEEEECSGGGGG-----------GH-----HHHHHHHHHHHHHC--CCTTEEEEEEEESSSEE---EEEEEEC---
T ss_pred CeeEEEEEeCCCChhh-----------hH-----HHHHHHHHHHHHHh--CCCCcEEEEEEEecCce---EEeccCC---
Confidence 3689999999999851 00 12223333333322 23356899999987642 2345542
Q ss_pred CCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHH--HcC--CceEEEEEEeCCcccccCCCCCCCCchhHHHHHH
Q 042398 178 PCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVE--KSG--GQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIK 253 (422)
Q Consensus 178 ~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~--~~~--~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~ 253 (422)
..+.+.++-.+. +.+...|-|+...-|+.+.+... ... ..-.++++||||..++.. .....+
T Consensus 63 ---~~~~~~~~i~~l-~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~~----------~~~~~~ 128 (185)
T 3n2n_F 63 ---DREQIRQGLEEL-QKVLPGGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDL----------FFYSER 128 (185)
T ss_dssp ---CHHHHHHHHHHH-HTCCCCSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHHH----------HHHHHH
T ss_pred ---CHHHHHHHHHHH-hhhcCCCCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCCc----------ccchHH
Confidence 344444433332 22345799999999999998652 222 246789999999988721 123456
Q ss_pred HHHHhcCCCeeEEEEecCCCCccccccccC
Q 042398 254 SIVAASSYPLSIVLVGVGDGPWEDMQKFDD 283 (422)
Q Consensus 254 aIv~AS~~PlSIiiVGVG~~~f~~m~~LD~ 283 (422)
++..+.+..+-|..||||+.+...|+.+-+
T Consensus 129 ~~~~~~~~gi~i~~igvg~~~~~~L~~iA~ 158 (185)
T 3n2n_F 129 EANRSRDLGAIVYAVGVKDFNETQLARIAD 158 (185)
T ss_dssp HHHHHHHTTEEEEEEECSSCCHHHHTTTSS
T ss_pred HHHHHHHCCCEEEEEEeccCCHHHHHHHhC
Confidence 667777788999999999888777777654
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.13 E-value=6.7e-07 Score=80.28 Aligned_cols=46 Identities=28% Similarity=0.801 Sum_probs=40.4
Q ss_pred CCCcCCccccccccccc-ccccCCCccchhhhhcC-----CCCCCccccccC
Q 042398 371 PVAETQACPICLTNAKD-LAFGCGHMTCRECGSRV-----SNCPICRQRITN 416 (422)
Q Consensus 371 ~~~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~-----~~CP~CR~~i~~ 416 (422)
++.+.+.|+||++.+.+ +.++|||.||..|+.++ ..||+||.++..
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 46788999999999999 56799999999999875 489999999865
No 62
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.09 E-value=9.3e-07 Score=81.20 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=37.9
Q ss_pred cCCccccccccccc-ccccCCCccchhhhhcC-----CCCCCccccccCc
Q 042398 374 ETQACPICLTNAKD-LAFGCGHMTCRECGSRV-----SNCPICRQRITNR 417 (422)
Q Consensus 374 e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~-----~~CP~CR~~i~~~ 417 (422)
+.+.||||++.+.+ ++++|||.||..|+..+ ..||+||.++...
T Consensus 105 ~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 105 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred HhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 56899999999999 66799999999999854 3599999998653
No 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.09 E-value=9.5e-07 Score=72.32 Aligned_cols=42 Identities=26% Similarity=0.545 Sum_probs=35.6
Q ss_pred CCcCCccccccccccc-cccc-CCCccchhhhhcC----------CCCCC--cccc
Q 042398 372 VAETQACPICLTNAKD-LAFG-CGHMTCRECGSRV----------SNCPI--CRQR 413 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~-v~l~-CGH~fC~~Ci~~~----------~~CP~--CR~~ 413 (422)
..+.+.||||++.+.+ ++++ |||.||..|+..+ ..||+ |+..
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3567899999999999 6675 9999999999854 28999 9865
No 64
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.06 E-value=8.5e-07 Score=75.25 Aligned_cols=49 Identities=31% Similarity=0.929 Sum_probs=39.6
Q ss_pred CcCCccccccccccc--------ccccCCCccchhhhhcC----CCCCCccccccCc--cccC
Q 042398 373 AETQACPICLTNAKD--------LAFGCGHMTCRECGSRV----SNCPICRQRITNR--LRLF 421 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~--------v~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~~--i~vy 421 (422)
.+...|+||++.+.+ +.++|||.||..|+..| ..||+||..+... +++|
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 456789999998876 44599999999999965 7899999998753 4444
No 65
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.03 E-value=1.4e-05 Score=72.79 Aligned_cols=139 Identities=17% Similarity=0.277 Sum_probs=97.4
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCCCcceeeecCCCCCCCCCcccCCCCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHTP 178 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~~ 178 (422)
.++++.||-|+|+... +..++..+.|...+..++..+. +..+-++.|+.... .++++..
T Consensus 12 ~~iv~vlD~SgSM~~~-------------d~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~---~~~~~~~---- 70 (218)
T 3ibs_A 12 VEVIIALDISNSMLAQ-------------DVQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAF---TQLPITS---- 70 (218)
T ss_dssp CEEEEEEECSGGGGCC-------------SSSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEE---EEEEEES----
T ss_pred CcEEEEEECCcCcccc-------------cCCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCce---EeCCCCC----
Confidence 6799999999999642 1125788888888888888887 45899999997632 2344432
Q ss_pred CCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcCCceEEEEEEeCCcccccCCCCCCCCchhHHHHHHHHHHh
Q 042398 179 CHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAA 258 (422)
Q Consensus 179 ~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~A 258 (422)
+.+.+.+.-...-+.....|.|++..-|+.+.+........-.++++||||..++. ...+++..+
T Consensus 71 --~~~~~~~~l~~l~~~~~~~g~T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~-------------~~~~~~~~~ 135 (218)
T 3ibs_A 71 --DYISAKMFLESISPSLISKQGTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEG-------------GAVEAAKAA 135 (218)
T ss_dssp --CHHHHHHHHHTCCGGGCCSCSCCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCS-------------CHHHHHHHH
T ss_pred --CHHHHHHHHHhcCcccCCCCCCcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCC-------------cHHHHHHHH
Confidence 34444443333333344579999999999988766554345678899999988761 234555666
Q ss_pred cCCCeeEEEEecCCC
Q 042398 259 SSYPLSIVLVGVGDG 273 (422)
Q Consensus 259 S~~PlSIiiVGVG~~ 273 (422)
....+.|..||||+.
T Consensus 136 ~~~~i~v~~igig~~ 150 (218)
T 3ibs_A 136 AEKGIQVSVLGVGMP 150 (218)
T ss_dssp HTTTEEEEEEEESCT
T ss_pred HhcCCEEEEEEecCC
Confidence 677899999999984
No 66
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.00 E-value=7.1e-06 Score=72.55 Aligned_cols=147 Identities=14% Similarity=0.124 Sum_probs=96.3
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCCCcceeeecCCCCCCCCCcccCCCCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHTP 178 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~~ 178 (422)
.++++.||-|+|.+. .. ....+.|...+..++. .+-.+-++.|+.... .++++.
T Consensus 7 ~dvv~vlD~SgSM~~-----------~~----~~~~~~~~~~~~~~~~---~~~~v~lv~f~~~~~---~~~~~~----- 60 (182)
T 1shu_X 7 FDLYFVLDKSGSVAN-----------NW----IEIYNFVQQLAERFVS---PEMRLSFIVFSSQAT---IILPLT----- 60 (182)
T ss_dssp EEEEEEEECSGGGGG-----------GH----HHHHHHHHHHHHHCCC---TTEEEEEEEESSSEE---EEEEEE-----
T ss_pred eeEEEEEECCCCccc-----------CH----HHHHHHHHHHHHHhcC---CCceEEEEEeCCCce---EEECCC-----
Confidence 689999999999852 00 1123334444444444 466799999987632 234443
Q ss_pred CCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHc--CCceEEEEEEeCCcccccCCCCCCCCchhHHHHHHHHH
Q 042398 179 CHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKS--GGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIV 256 (422)
Q Consensus 179 ~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~--~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv 256 (422)
.+.+.+.++-. .+..+...|.|+....|+.+.+..... ...-.++++||||..++. ......+++.
T Consensus 61 -~~~~~~~~~l~-~l~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~----------~~~~~~~~~~ 128 (182)
T 1shu_X 61 -GDRGKISKGLE-DLKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGL----------VPSYAEKEAK 128 (182)
T ss_dssp -CCHHHHHHHHH-HHHTCCCCSCCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTT----------HHHHHHHHHH
T ss_pred -CCHHHHHHHHH-hcccCCCCCCchHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCC----------CchhHHHHHH
Confidence 22333333222 223345679999999999999887654 234688899999998762 1233455666
Q ss_pred HhcCCCeeEEEEecCCCCccccccccC
Q 042398 257 AASSYPLSIVLVGVGDGPWEDMQKFDD 283 (422)
Q Consensus 257 ~AS~~PlSIiiVGVG~~~f~~m~~LD~ 283 (422)
.+....+.|..||||+.+...|+.+-+
T Consensus 129 ~~~~~~i~i~~igvg~~~~~~L~~ia~ 155 (182)
T 1shu_X 129 ISRSLGASVYCVGVLDFEQAQLERIAD 155 (182)
T ss_dssp HHHHTTCEEEEEECSSCCHHHHHHHSS
T ss_pred HHHhCCCEEEEEeCCcCCHHHHHHHhC
Confidence 677788999999999888777777754
No 67
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=97.91 E-value=2.4e-05 Score=81.31 Aligned_cols=156 Identities=12% Similarity=0.144 Sum_probs=105.9
Q ss_pred CccccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCCCcceeeecCCCCCCCCCcccCCC
Q 042398 96 LESSNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDD 175 (422)
Q Consensus 96 ~~~~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~ 175 (422)
...+++++.||.|+|+.++ .+..+.|..++..++..+.++..|-++.|+.... .++++...
T Consensus 75 ~~~~dvv~VLD~SGSM~~~----------------~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~---~~~p~t~~ 135 (464)
T 4fx5_A 75 GSENVEVIIIDCSGSMDYP----------------RTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGAR---VVYPTGGQ 135 (464)
T ss_dssp -CCEEEEEEEECCGGGGTT----------------THHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEE---EEESSSSS
T ss_pred CCCceEEEEEEcCcccCCC----------------CchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceE---EEecCCcc
Confidence 3458999999999999531 3567788888888888887777899999987642 13333210
Q ss_pred CCCCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcCCceEEEEEEeCCcccccCCCCCCCCchhHHHHHHHH
Q 042398 176 HTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSI 255 (422)
Q Consensus 176 ~~~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aI 255 (422)
....-..-.+.-.+.+..++..|-|++..-|+.+.+...+..+.-.++++||||+.++. ....+...
T Consensus 136 --l~~~~~~~~~~l~~~I~~L~~~GgT~l~~aL~~A~~~l~~~~~~~~~IILLTDG~~~~~-----------~~~~l~~~ 202 (464)
T 4fx5_A 136 --LLRADYQSRAAAKEAVGRLHANGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESE-----------TPADLARA 202 (464)
T ss_dssp --CEECSHHHHHHHHHHHHTCCCCSCCCHHHHHHHHHHHHTTCTTSEEEEEEEESSCCTTS-----------CHHHHHHH
T ss_pred --cccCCHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCCCC-----------ChHHHHHH
Confidence 00000112233344456677789999999999999887765555678899999998752 12334445
Q ss_pred HHhcCCCeeEEEEecCCC-CccccccccC
Q 042398 256 VAASSYPLSIVLVGVGDG-PWEDMQKFDD 283 (422)
Q Consensus 256 v~AS~~PlSIiiVGVG~~-~f~~m~~LD~ 283 (422)
.++....+.|..||||.. +...|+++-.
T Consensus 203 ~~a~~~~i~i~tiGiG~~~d~~~L~~IA~ 231 (464)
T 4fx5_A 203 IQSSIGNFTADCRGIGEDWEPKELRKIAD 231 (464)
T ss_dssp HHHHTTTCEEEEEEESSSSCHHHHHHHHH
T ss_pred HHHhcCCCeEEEEEeCCccCHHHHHHHHH
Confidence 556677899999999954 6666776643
No 68
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=97.90 E-value=2.9e-05 Score=69.31 Aligned_cols=138 Identities=10% Similarity=0.107 Sum_probs=91.8
Q ss_pred cccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCC---CCCcceeeecCCCCCCCCCcccCC
Q 042398 98 SSNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDE---DNLIPCFGFGDATTHDQEVFSFHD 174 (422)
Q Consensus 98 ~~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~---D~~ip~~GFGa~~~~~~~vf~~~~ 174 (422)
.+++++.||-|+|.+. ..++.+...+..++..++. .-.+-++.|+.... .+|+|+.
T Consensus 17 ~~divfvlD~SgSm~~------------------~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~---~~~~l~~ 75 (178)
T 2xgg_A 17 QLDICFLIDSSGSIGI------------------QNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVH---LQWDLQS 75 (178)
T ss_dssp CEEEEEEEECCTTTCH------------------HHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEE---EEECTTS
T ss_pred CeeEEEEEECCCCCCH------------------HHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceE---EEEeCCC
Confidence 3789999999999852 2466777777777777763 36899999998642 2355532
Q ss_pred CCCCCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHc-----CCceEEEEEEeCCcccccCCCCCCCCchhHH
Q 042398 175 DHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKS-----GGQYHVLVIIADGQVTRSVNTGDGELSSQEQ 249 (422)
Q Consensus 175 ~~~~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~-----~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~ 249 (422)
.. ....+.++++-.. ++. ..|.|+...-|+.|.+..... ...-.++++||||..++ ..
T Consensus 76 ~~--~~~~~~~~~~i~~-l~~--~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~------------~~ 138 (178)
T 2xgg_A 76 PN--AVDKQLAAHAVLD-MPY--KKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDS------------DF 138 (178)
T ss_dssp GG--GSCHHHHHHHHHH-CCC--CCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCH------------HH
T ss_pred CC--ccCHHHHHHHHHh-CCC--CCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCC------------Cc
Confidence 11 1145555554333 221 568999999999999864321 12457899999999887 22
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCC
Q 042398 250 KTIKSIVAASSYPLSIVLVGVGDG 273 (422)
Q Consensus 250 ~T~~aIv~AS~~PlSIiiVGVG~~ 273 (422)
...+++..+.+..+-|..||||+.
T Consensus 139 ~~~~~~~~l~~~gi~v~~igvG~~ 162 (178)
T 2xgg_A 139 RTVRAAKEIRELGGIVTVLAVGHY 162 (178)
T ss_dssp HHSHHHHHHHHTTCEEEEEECC--
T ss_pred cHHHHHHHHHHCCCEEEEEEcCCc
Confidence 344555555566889999999975
No 69
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=97.85 E-value=1.6e-05 Score=72.33 Aligned_cols=157 Identities=14% Similarity=0.120 Sum_probs=96.8
Q ss_pred cccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCCCcceeeecCCCCCCCCCcccCCCCC
Q 042398 98 SSNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHT 177 (422)
Q Consensus 98 ~~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~ 177 (422)
.+++++.||-|+|.++. ......+++..+..-+..++.+-.+-++.|+.... .++++. .+
T Consensus 15 ~~div~vlD~SgSM~~~---------------~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~---~~~~~~--~~ 74 (223)
T 1q0p_A 15 SMNIYLVLDGSDSIGAS---------------NFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPK---IWVKVS--EA 74 (223)
T ss_dssp CEEEEEEEECSTTTCHH---------------HHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEE---EEECTT--SG
T ss_pred ceeEEEEEeCCCCCchH---------------HHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccc---eeeccc--cC
Confidence 47899999999999631 01233344444444455566667899999998642 223332 22
Q ss_pred CCCCHHHHHHHHHhhCCcc-cccCCCChHHHHHHHHHHHHHcC--------CceEEEEEEeCCcccccCCCCCCCCchhH
Q 042398 178 PCHGFEEVLACYRNIVPNL-RLAGPTSYAPVVEAAMDIVEKSG--------GQYHVLVIIADGQVTRSVNTGDGELSSQE 248 (422)
Q Consensus 178 ~~~G~~gvl~~Y~~~l~~v-~l~GPT~fapiI~~a~~~~~~~~--------~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~ 248 (422)
.-...+.+.++-...-+.. ...|.|+...-|+.+.+...... ..-.++++||||..+...| .
T Consensus 75 ~~~~~~~~~~~i~~l~~~~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~---------~ 145 (223)
T 1q0p_A 75 DSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGD---------P 145 (223)
T ss_dssp GGGCHHHHHHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSC---------T
T ss_pred CCCCHHHHHHHHHhcccccccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCC---------h
Confidence 2234555555443332221 24799999999999998765321 3457889999998873111 2
Q ss_pred HHHHHHHHHh----------cCCCeeEEEEecCC-CCccccccccC
Q 042398 249 QKTIKSIVAA----------SSYPLSIVLVGVGD-GPWEDMQKFDD 283 (422)
Q Consensus 249 ~~T~~aIv~A----------S~~PlSIiiVGVG~-~~f~~m~~LD~ 283 (422)
....+.+.+. ....+-|..||||+ .+...|+.+=.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~~igvG~~~~~~~L~~iA~ 191 (223)
T 1q0p_A 146 ITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS 191 (223)
T ss_dssp HHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSSCCCHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhhhhhhcccCCcEEEEEEecCcCCHHHHHHHhc
Confidence 3444455432 34578899999996 46666766654
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.83 E-value=7.8e-06 Score=79.15 Aligned_cols=45 Identities=24% Similarity=0.437 Sum_probs=38.2
Q ss_pred CCcCCccccccccccc-ccc-cCCCccchhhhhcC------CCCCC--ccccccC
Q 042398 372 VAETQACPICLTNAKD-LAF-GCGHMTCRECGSRV------SNCPI--CRQRITN 416 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~-v~l-~CGH~fC~~Ci~~~------~~CP~--CR~~i~~ 416 (422)
......||||++.+.+ |+. .|||.||..|+..+ ..||+ ||..+..
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 5778999999999999 544 99999999999954 36999 9998754
No 71
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.83 E-value=5.4e-06 Score=69.75 Aligned_cols=42 Identities=29% Similarity=0.470 Sum_probs=34.1
Q ss_pred cCCcccccccccccc-------------------cccCCCccchhhhhcC----CCCCCcccccc
Q 042398 374 ETQACPICLTNAKDL-------------------AFGCGHMTCRECGSRV----SNCPICRQRIT 415 (422)
Q Consensus 374 e~~~CpIC~~~~~~v-------------------~l~CGH~fC~~Ci~~~----~~CP~CR~~i~ 415 (422)
++..|.||++.+.+. .++|+|.||..|+..+ ..||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 557899999887641 2599999999999975 67999999853
No 72
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=97.74 E-value=8.2e-05 Score=66.60 Aligned_cols=143 Identities=14% Similarity=0.188 Sum_probs=94.8
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccC---CCCCcceeeecCCCCCCCCCcccCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFD---EDNLIPCFGFGDATTHDQEVFSFHDD 175 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD---~D~~ip~~GFGa~~~~~~~vf~~~~~ 175 (422)
+++++.||-|+|.+. +.++++...+..++..++ .+-.+-++.|+.... .+|+++.
T Consensus 6 ~div~vlD~SgSm~~------------------~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~---~~~~l~~- 63 (189)
T 1atz_A 6 LDVILLLDGSSSFPA------------------SYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITT---IDVPWNV- 63 (189)
T ss_dssp EEEEEEEECSSSSCH------------------HHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEE---EEECTTC-
T ss_pred eeEEEEEeCCCCCCh------------------hhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcce---EEEecCC-
Confidence 689999999999851 356667777777777765 235789999987642 2355532
Q ss_pred CCCCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHc-----CCceEEEEEEeCCcccccCCCCCCCCchhHHH
Q 042398 176 HTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKS-----GGQYHVLVIIADGQVTRSVNTGDGELSSQEQK 250 (422)
Q Consensus 176 ~~~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~-----~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~ 250 (422)
-...+.+.++-.. ++. ..|.|+...-|+.|.+..... .+.-.+++|||||..+|. ..+
T Consensus 64 ---~~~~~~~~~~i~~-l~~--~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~~-----------~~~ 126 (189)
T 1atz_A 64 ---VPEKAHLLSLVDV-MQR--EGGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVDS-----------VDA 126 (189)
T ss_dssp ---CCCHHHHHHHHHT-CCC--CCCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSSC-----------CHH
T ss_pred ---CCCHHHHHHHHHh-CcC--CCCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCch-----------HHH
Confidence 1345566555443 222 368899999999999876542 234577888999987651 233
Q ss_pred HHHHHHHhcCCCeeEEEEecCC-CCccccccccC
Q 042398 251 TIKSIVAASSYPLSIVLVGVGD-GPWEDMQKFDD 283 (422)
Q Consensus 251 T~~aIv~AS~~PlSIiiVGVG~-~~f~~m~~LD~ 283 (422)
..+. +....+-|..||||+ .+-..|+.+=+
T Consensus 127 ~~~~---~~~~gi~v~~igvG~~~~~~~L~~iA~ 157 (189)
T 1atz_A 127 AADA---ARSNRVTVFPIGIGDRYDAAQLRILAG 157 (189)
T ss_dssp HHHH---HHHTTEEEEEEEESSSSCHHHHHHHTG
T ss_pred HHHH---HHHCCCEEEEEEcCCcCCHHHHHHHHC
Confidence 3443 445688999999998 45555655543
No 73
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=97.71 E-value=6.2e-05 Score=68.55 Aligned_cols=145 Identities=9% Similarity=0.159 Sum_probs=94.9
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccC---CCCCcceeeecCCCCCCCCCcccCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFD---EDNLIPCFGFGDATTHDQEVFSFHDD 175 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD---~D~~ip~~GFGa~~~~~~~vf~~~~~ 175 (422)
+++++.||-|+|.+. +.++++...+..++..++ ++-.+-+..|+.... ..|+|+.-
T Consensus 14 ~divfvlD~SgSm~~------------------~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~---~~~~l~~~ 72 (202)
T 1ijb_A 14 LDLVFLLDGSSRLSE------------------AEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSH---AYIGLKDR 72 (202)
T ss_dssp EEEEEEEECBTTSCH------------------HHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEE---EEECTTCC
T ss_pred ccEEEEEECCCCCCH------------------HHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCce---EEEecCCC
Confidence 789999999999851 246677777777787776 445899999987642 23555421
Q ss_pred CCCCCCHHHHHHHHHhhCCcccc-cC-CCChHHHHHHHHHHH-HHc--CCceEEEEEEeCCcccccCCCCCCCCchhHHH
Q 042398 176 HTPCHGFEEVLACYRNIVPNLRL-AG-PTSYAPVVEAAMDIV-EKS--GGQYHVLVIIADGQVTRSVNTGDGELSSQEQK 250 (422)
Q Consensus 176 ~~~~~G~~gvl~~Y~~~l~~v~l-~G-PT~fapiI~~a~~~~-~~~--~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~ 250 (422)
...+.+.++-. .++. .| -|+....|+++.+.. .+. .+.-.++++||||.-++.. .+.
T Consensus 73 ----~~~~~~~~~i~----~l~~~gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~~----------~~~ 134 (202)
T 1ijb_A 73 ----KRPSELRRIAS----QVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRM----------SRN 134 (202)
T ss_dssp ----CCHHHHHHHHH----TCCCCCBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGGG----------CTT
T ss_pred ----CCHHHHHHHHH----hCcCCCCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCccc----------hHH
Confidence 23455544432 3333 44 399999999887543 211 2346899999999987510 112
Q ss_pred HHHHHHHhcCCCeeEEEEecCC-CCcccccccc
Q 042398 251 TIKSIVAASSYPLSIVLVGVGD-GPWEDMQKFD 282 (422)
Q Consensus 251 T~~aIv~AS~~PlSIiiVGVG~-~~f~~m~~LD 282 (422)
..+++..+-+..+-|..||||+ .+.+.|+.+-
T Consensus 135 ~~~~a~~l~~~gi~i~~igvG~~~~~~~L~~iA 167 (202)
T 1ijb_A 135 FVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIE 167 (202)
T ss_dssp HHHHHHHHHHTTEEEEEEEESTTSCHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEecCCcCCHHHHHHHh
Confidence 3444445555789999999996 5666777664
No 74
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=97.69 E-value=1.2e-05 Score=72.12 Aligned_cols=144 Identities=17% Similarity=0.307 Sum_probs=92.0
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhcccccc-CCCCCcceeeecCCCCCCCCCcccCCCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPF-DEDNLIPCFGFGDATTHDQEVFSFHDDHT 177 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~y-D~D~~ip~~GFGa~~~~~~~vf~~~~~~~ 177 (422)
+++++.||-|+|.+. ..++.+...+-.++..+ ..+-.+-++.|+.... .+++++.
T Consensus 10 ~div~vlD~SgSM~~------------------~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~---~~~~~~~--- 65 (198)
T 1n3y_A 10 QDIVFLIDGSGSISS------------------RNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQ---THFTFEE--- 65 (198)
T ss_dssp EEEEEEEECCTTSCH------------------HHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEE---EEECHHH---
T ss_pred eeEEEEEECCCCCCH------------------HHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCcc---EEEecCc---
Confidence 689999999999852 13456666666677777 5777899999998632 2233321
Q ss_pred CCCCHHHHHHHHHhhCCccc-ccCCCChHHHHHHHHHH-HHHc----CCceEEEEEEeCCccc-ccCCCCCCCCchhHHH
Q 042398 178 PCHGFEEVLACYRNIVPNLR-LAGPTSYAPVVEAAMDI-VEKS----GGQYHVLVIIADGQVT-RSVNTGDGELSSQEQK 250 (422)
Q Consensus 178 ~~~G~~gvl~~Y~~~l~~v~-l~GPT~fapiI~~a~~~-~~~~----~~~Y~VLlIiTDG~i~-d~~~~~~~~~~~~~~~ 250 (422)
... .+...+.+..+. ..|.|+....|+.+.+. .... .+.-.++++||||..+ |.. .
T Consensus 66 ----~~~-~~~~~~~i~~l~~~~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~------------~ 128 (198)
T 1n3y_A 66 ----FRR-SSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSL------------D 128 (198)
T ss_dssp ----HHH-CSSGGGGGTTCCCCCSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSS------------C
T ss_pred ----cCC-HHHHHHHHhcCcCCCCCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCcc------------c
Confidence 000 011223344443 67899999999999843 2321 2346889999999987 411 1
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCC-----ccccccccC
Q 042398 251 TIKSIVAASSYPLSIVLVGVGDGP-----WEDMQKFDD 283 (422)
Q Consensus 251 T~~aIv~AS~~PlSIiiVGVG~~~-----f~~m~~LD~ 283 (422)
..+++..+....+-|..||||+.. ...|+.+-.
T Consensus 129 ~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~~iA~ 166 (198)
T 1n3y_A 129 YKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIAS 166 (198)
T ss_dssp HHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHSC
T ss_pred HHHHHHHHHHCCCEEEEEEccccccccccHHHHHHHHc
Confidence 234445556678899999999864 455555543
No 75
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=97.68 E-value=0.00022 Score=65.74 Aligned_cols=133 Identities=19% Similarity=0.295 Sum_probs=90.3
Q ss_pred cccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccC---CCCCcceeeecCCCCCCCCCcccCC
Q 042398 98 SSNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFD---EDNLIPCFGFGDATTHDQEVFSFHD 174 (422)
Q Consensus 98 ~~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD---~D~~ip~~GFGa~~~~~~~vf~~~~ 174 (422)
.+++++.||-|+|.+ .++++...+..++..++ .+-.+-++.|+.... .+|+++
T Consensus 22 ~~div~vlD~SgSM~--------------------~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~---~~~~l~- 77 (223)
T 2b2x_A 22 QLDIVIVLDGSNSIY--------------------PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVT---HEFNLN- 77 (223)
T ss_dssp CEEEEEEEECSTTCC--------------------CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEE---EEECTT-
T ss_pred cceEEEEEECCCChh--------------------hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCcc---EEEecC-
Confidence 378999999999984 05677777777777775 577899999987642 234542
Q ss_pred CCCCCCCHHHHHHHHHhhCCcccc-cC-CCChHHHHHHHHHH-HHH----cCCceEEEEEEeCCcccccCCCCCCCCchh
Q 042398 175 DHTPCHGFEEVLACYRNIVPNLRL-AG-PTSYAPVVEAAMDI-VEK----SGGQYHVLVIIADGQVTRSVNTGDGELSSQ 247 (422)
Q Consensus 175 ~~~~~~G~~gvl~~Y~~~l~~v~l-~G-PT~fapiI~~a~~~-~~~----~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~ 247 (422)
+ ....+.++++ +..+.. .| -|+...-|+++.+. ... ..+.-.++++||||.-++.
T Consensus 78 -~--~~~~~~~~~~----i~~l~~~gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~----------- 139 (223)
T 2b2x_A 78 -K--YSSTEEVLVA----ANKIVQRGGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDN----------- 139 (223)
T ss_dssp -T--CCSHHHHHHH----HTTCCCCCCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTG-----------
T ss_pred -C--CCCHHHHHHH----HHhhhccCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCC-----------
Confidence 1 1345555543 334443 45 49999999999875 221 1234678999999998872
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCC
Q 042398 248 EQKTIKSIVAASSYPLSIVLVGVGDG 273 (422)
Q Consensus 248 ~~~T~~aIv~AS~~PlSIiiVGVG~~ 273 (422)
....+++..+....+-|..||||+.
T Consensus 140 -~~~~~~~~~~~~~gi~v~~igvG~~ 164 (223)
T 2b2x_A 140 -YRLKQVIQDCEDENIQRFSIAILGH 164 (223)
T ss_dssp -GGHHHHHHHHHTTTEEEEEEEECGG
T ss_pred -ccHHHHHHHHHHCCCEEEEEEecCc
Confidence 1234455556677899999999974
No 76
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.65 E-value=7.4e-06 Score=70.27 Aligned_cols=42 Identities=26% Similarity=0.453 Sum_probs=0.9
Q ss_pred cCCccccccccccc------------------c-cccCCCccchhhhhcC----CCCCCcccccc
Q 042398 374 ETQACPICLTNAKD------------------L-AFGCGHMTCRECGSRV----SNCPICRQRIT 415 (422)
Q Consensus 374 e~~~CpIC~~~~~~------------------v-~l~CGH~fC~~Ci~~~----~~CP~CR~~i~ 415 (422)
++..|.||++.+.+ + .++|+|.||..|+..| ..||+||.++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 44689999988754 1 2489999999999986 57999999853
No 77
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=2.8e-05 Score=62.13 Aligned_cols=47 Identities=21% Similarity=0.535 Sum_probs=36.8
Q ss_pred CCcCCccccccccccc---ccccCC-----CccchhhhhcC------CCCCCccccccCcc
Q 042398 372 VAETQACPICLTNAKD---LAFGCG-----HMTCRECGSRV------SNCPICRQRITNRL 418 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~---v~l~CG-----H~fC~~Ci~~~------~~CP~CR~~i~~~i 418 (422)
..+...|.||++.+.+ +++||. |.|+..|+.+| ..||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 3456789999987643 456996 99999999977 47999999986543
No 78
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.62 E-value=1.1e-05 Score=65.48 Aligned_cols=40 Identities=23% Similarity=0.644 Sum_probs=32.2
Q ss_pred cCCccccccccccc-c--cc-cCCCccchhhhhcC------------CCCCC--cccc
Q 042398 374 ETQACPICLTNAKD-L--AF-GCGHMTCRECGSRV------------SNCPI--CRQR 413 (422)
Q Consensus 374 e~~~CpIC~~~~~~-v--~l-~CGH~fC~~Ci~~~------------~~CP~--CR~~ 413 (422)
+...|+||++.+.. . .+ +|||.||..|+... ..||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 46789999998876 2 22 79999999998732 36999 9988
No 79
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=97.58 E-value=0.00042 Score=63.21 Aligned_cols=133 Identities=18% Similarity=0.292 Sum_probs=89.3
Q ss_pred cccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccC---CCCCcceeeecCCCCCCCCCcccCC
Q 042398 98 SSNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFD---EDNLIPCFGFGDATTHDQEVFSFHD 174 (422)
Q Consensus 98 ~~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD---~D~~ip~~GFGa~~~~~~~vf~~~~ 174 (422)
.+++++.||-|+|.+ .++.+...+-.++..++ .+-.+-++.|+.... .+|+++
T Consensus 7 ~~div~vlD~SgSm~--------------------~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~---~~~~l~- 62 (213)
T 1pt6_A 7 QLDIVIVLDGSNSIY--------------------PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVT---HEFNLN- 62 (213)
T ss_dssp CEEEEEEEECCTTCC--------------------CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEE---EEECTT-
T ss_pred CccEEEEEECCCChh--------------------hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCcc---EEEecc-
Confidence 368999999999984 04566666666666664 677899999997642 235542
Q ss_pred CCCCCCCHHHHHHHHHhhCCccc-ccC-CCChHHHHHHHHHHH-HH----cCCceEEEEEEeCCcccccCCCCCCCCchh
Q 042398 175 DHTPCHGFEEVLACYRNIVPNLR-LAG-PTSYAPVVEAAMDIV-EK----SGGQYHVLVIIADGQVTRSVNTGDGELSSQ 247 (422)
Q Consensus 175 ~~~~~~G~~gvl~~Y~~~l~~v~-l~G-PT~fapiI~~a~~~~-~~----~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~ 247 (422)
+ ....+.++++-. .+. ..| -|+....|+.|.+.. .. ....-.++++||||..++.
T Consensus 63 -~--~~~~~~~~~~i~----~l~~~~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~----------- 124 (213)
T 1pt6_A 63 -K--YSSTEEVLVAAK----KIVQRGGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDN----------- 124 (213)
T ss_dssp -T--CSSHHHHHHHHH----TCCCCCCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCS-----------
T ss_pred -c--cCCHHHHHHHHH----hccCCCCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCC-----------
Confidence 1 134566655443 333 356 499999999998752 21 1235788999999998872
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCC
Q 042398 248 EQKTIKSIVAASSYPLSIVLVGVGDG 273 (422)
Q Consensus 248 ~~~T~~aIv~AS~~PlSIiiVGVG~~ 273 (422)
....+++..+.+..+-|..||||+.
T Consensus 125 -~~~~~~~~~~~~~gi~i~~igig~~ 149 (213)
T 1pt6_A 125 -HRLKKVIQDCEDENIQRFSIAILGS 149 (213)
T ss_dssp -HHHHHHHHHHHHTTEEEEEEEECHH
T ss_pred -ccHHHHHHHHHHCCCEEEEEEeccc
Confidence 2344555556667899999999963
No 80
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=97.58 E-value=0.0005 Score=63.09 Aligned_cols=160 Identities=14% Similarity=0.213 Sum_probs=103.6
Q ss_pred cceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhcccccc---CCCCCcceeeecCCCCCCCCCcccCCCC
Q 042398 100 NLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPF---DEDNLIPCFGFGDATTHDQEVFSFHDDH 176 (422)
Q Consensus 100 nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~y---D~D~~ip~~GFGa~~~~~~~vf~~~~~~ 176 (422)
.++++||-|.|+... +-.+|..+.|...+-.++..| .....+-+..|++...+ -+.+++.
T Consensus 4 ~lvlvlD~S~SM~~~-------------D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~--~~~plT~-- 66 (192)
T 2x5n_A 4 ATMILIDNSEWMING-------------DYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQ--VLSTLTR-- 66 (192)
T ss_dssp EEEEEECCSGGGGCT-------------TSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCC--EEEEEES--
T ss_pred EEEEEEECCHhhccC-------------CCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcE--EecCCCC--
Confidence 589999999998632 113688998888777766544 34568889999874221 1223332
Q ss_pred CCCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcC--Cce-EEEEEEeCCcccccCCCCCCCCchhHHHHHH
Q 042398 177 TPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSG--GQY-HVLVIIADGQVTRSVNTGDGELSSQEQKTIK 253 (422)
Q Consensus 177 ~~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~--~~Y-~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~ 253 (422)
+.+.+++ .+..+...|.|++..-|+.|.+..++.. ... -|+|+++|+.-.| ..+..+
T Consensus 67 ----d~~~i~~----~L~~l~~~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~~~------------~~~~~~ 126 (192)
T 2x5n_A 67 ----DYGKFLS----AMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVED------------EKNLIR 126 (192)
T ss_dssp ----CHHHHHH----HHTTCCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSC------------HHHHHH
T ss_pred ----CHHHHHH----HHHcCCCCCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCCCCC------------chhHHH
Confidence 2444443 4455778899999999999998877643 223 3555555544222 456677
Q ss_pred HHHHhcCCCeeEEEEecCCCCccc-cccccCCCCCcccccceecch
Q 042398 254 SIVAASSYPLSIVLVGVGDGPWED-MQKFDDKIPAREFDNFQFVNF 298 (422)
Q Consensus 254 aIv~AS~~PlSIiiVGVG~~~f~~-m~~LD~~~~~r~rDnvqFV~f 298 (422)
++..+.+.-+.|.+||+|..+... |+.|=+... .-|+-+||..
T Consensus 127 ~a~~lk~~gi~v~~Ig~G~~~~~~~l~~la~~~n--~~~~s~~~~~ 170 (192)
T 2x5n_A 127 LAKRMKKNNVAIDIIHIGELQNESALQHFIDAAN--SSDSCHLVSI 170 (192)
T ss_dssp HHHHHHHTTEEEEEEEESCC---CHHHHHHHHHC--STTCCEEEEE
T ss_pred HHHHHHHCCCEEEEEEeCCCCccHHHHHHHHhcc--CCCceEEEEe
Confidence 788888889999999999876532 777643222 1267788754
No 81
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=97.53 E-value=0.00012 Score=75.41 Aligned_cols=155 Identities=15% Similarity=0.206 Sum_probs=100.2
Q ss_pred cccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhcccccc---CCCCCcceeeecCCCCCCCCCcccCC
Q 042398 98 SSNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPF---DEDNLIPCFGFGDATTHDQEVFSFHD 174 (422)
Q Consensus 98 ~~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~y---D~D~~ip~~GFGa~~~~~~~vf~~~~ 174 (422)
.+++++.||-|.|.+. ..+++|...+..++..+ ..+-.+-++.|+.... .+|++..
T Consensus 9 ~~divfvlD~SgSM~~------------------~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~---~~~~l~~ 67 (509)
T 2odp_A 9 HLNLYLLLDASQSVSE------------------NDFLIFKESASLMVDRIFSFEINVSVAIITFASEPK---VLMSVLN 67 (509)
T ss_dssp EEEEEEEEECSTTSCH------------------HHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEE---EEECTTS
T ss_pred CeeEEEEEeCCCccch------------------hhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCc---eeEeccC
Confidence 4789999999999851 23466666666666555 6778899999987642 2344421
Q ss_pred CCCCCCCHHHHHHHHHhhCCcccc-cCCCChHHHHHHHHHHHHHcC-----------CceEEEEEEeCCcccccCCCCCC
Q 042398 175 DHTPCHGFEEVLACYRNIVPNLRL-AGPTSYAPVVEAAMDIVEKSG-----------GQYHVLVIIADGQVTRSVNTGDG 242 (422)
Q Consensus 175 ~~~~~~G~~gvl~~Y~~~l~~v~l-~GPT~fapiI~~a~~~~~~~~-----------~~Y~VLlIiTDG~i~d~~~~~~~ 242 (422)
+.-...+.++++-..+-..... .|.|+...-|+.|.+...... ..-.++++||||.-++..+
T Consensus 68 --~~~~~~~~~~~~l~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~---- 141 (509)
T 2odp_A 68 --DNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGS---- 141 (509)
T ss_dssp --GGGGCHHHHHHHHHTCCGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSC----
T ss_pred --CCCCCHHHHHHHHHhcccccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCCC----
Confidence 1122455665543332221111 388999999999987764321 1347889999998876221
Q ss_pred CCchhHHHHHHHHHHh------cCCCeeEEEEecCC--CCccccccccCC
Q 042398 243 ELSSQEQKTIKSIVAA------SSYPLSIVLVGVGD--GPWEDMQKFDDK 284 (422)
Q Consensus 243 ~~~~~~~~T~~aIv~A------S~~PlSIiiVGVG~--~~f~~m~~LD~~ 284 (422)
..+..+.+.+. .+..+-|..||||+ .+...|+++-+.
T Consensus 142 -----~~~~~~~~~~~~~~~~~~~~~i~i~~iGvG~~~~~~~~L~~iA~~ 186 (509)
T 2odp_A 142 -----PKTAVDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSK 186 (509)
T ss_dssp -----THHHHHHHHHHTTCCSTTGGGEEEEEEEESSSCCCHHHHHHHSCC
T ss_pred -----hhHHHHHHHHHhhccccccCceEEEEEEcCCCcccHHHHHhhccC
Confidence 24455555542 26678899999998 578888887653
No 82
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=97.51 E-value=1.1e-05 Score=72.16 Aligned_cols=150 Identities=15% Similarity=0.203 Sum_probs=89.9
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccc-cCCCCCcceeeecCCCCCCCCCcccCCCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAP-FDEDNLIPCFGFGDATTHDQEVFSFHDDHT 177 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~-yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~ 177 (422)
.++++.||-|+|+. | +..+.|...+..++.. +..+..+-++.|+.... ..++++.
T Consensus 6 ~~vv~vlD~SgSM~--~----------------~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~--~~~~~~~---- 61 (189)
T 2x31_A 6 RVLIFAVDASGSAA--V----------------ARLSEAKGAVELLLGRAYAARDHVSLITFRGTAA--QVLLQPS---- 61 (189)
T ss_dssp CEEEEEEECCTTSC--C------------------CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCC--CBCTTTC----
T ss_pred eEEEEEEECCCCCC--c----------------hHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCc--eEecCCC----
Confidence 57999999999984 1 1233344444444433 36666899999996321 1223222
Q ss_pred CCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcC--CceEEEEEEeCCcccccCCCCCCCCchh----HHHH
Q 042398 178 PCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSG--GQYHVLVIIADGQVTRSVNTGDGELSSQ----EQKT 251 (422)
Q Consensus 178 ~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~--~~Y~VLlIiTDG~i~d~~~~~~~~~~~~----~~~T 251 (422)
.+.+.+.+ .+..+...|-|++..-|+.+.+...+.. +.-.++++||||..++..+. +|. .++.
T Consensus 62 --~~~~~~~~----~i~~l~~~g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~-----~~~~~~~~~~~ 130 (189)
T 2x31_A 62 --RSLTQTKR----QLQGLPGGGGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDG-----TANRELAGEQA 130 (189)
T ss_dssp --SCHHHHHH----HHHHCCCCBCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTH-----HHHHGGGTCCC
T ss_pred --CCHHHHHH----HHhcCCCCCCCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCCCCCc-----cccccchhHHH
Confidence 24555443 3334556799999999999998877542 23578899999998762110 000 0011
Q ss_pred HHHHHHhcCCCeeEEEEecCCCCccccccccC
Q 042398 252 IKSIVAASSYPLSIVLVGVGDGPWEDMQKFDD 283 (422)
Q Consensus 252 ~~aIv~AS~~PlSIiiVGVG~~~f~~m~~LD~ 283 (422)
.+++..+....+.|..||+|+.+...|++|-.
T Consensus 131 ~~~~~~~~~~gi~v~~ig~g~~~~~~L~~iA~ 162 (189)
T 2x31_A 131 TKVARAIRASGMPAVIIDTAMRPNPALVDLAR 162 (189)
T ss_dssp EEEEECTGGGGSCCTHHHHHHSSCSSSCSTTT
T ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH
Confidence 12222333456788889999887777766643
No 83
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=97.46 E-value=1.5e-05 Score=71.63 Aligned_cols=143 Identities=17% Similarity=0.265 Sum_probs=91.3
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccC-CCCCcceeeecCCCCCCCCCcccCCC-C
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFD-EDNLIPCFGFGDATTHDQEVFSFHDD-H 176 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD-~D~~ip~~GFGa~~~~~~~vf~~~~~-~ 176 (422)
+++++.||-|+|.+. ..++++...+..++..++ .+-.+-++.|+.... .+|+++.. +
T Consensus 6 ~div~vlD~SgSm~~------------------~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~---~~~~l~~~~~ 64 (194)
T 1mf7_A 6 SDIAFLIDGSGSIIP------------------HDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFR---IHFTFKEFQN 64 (194)
T ss_dssp EEEEEEEECCTTSCH------------------HHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEE---EEECHHHHHH
T ss_pred eeEEEEEeCCCCCCH------------------HHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCce---EEEecCCcCC
Confidence 689999999999851 245666666667777775 345799999988642 23444321 1
Q ss_pred CCCCCHHHHHHHHHhhCCccc-ccCCCChHHHHHHHHHHH-HH-c---CCceEEEEEEeCCccc-ccCCCCCCCCchhHH
Q 042398 177 TPCHGFEEVLACYRNIVPNLR-LAGPTSYAPVVEAAMDIV-EK-S---GGQYHVLVIIADGQVT-RSVNTGDGELSSQEQ 249 (422)
Q Consensus 177 ~~~~G~~gvl~~Y~~~l~~v~-l~GPT~fapiI~~a~~~~-~~-~---~~~Y~VLlIiTDG~i~-d~~~~~~~~~~~~~~ 249 (422)
. ..+ .+.+..+. ..|.|+...-|+.+.+.. .. . .+.-.++++||||..+ |..
T Consensus 65 ~--~~~-------~~~i~~l~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~~------------ 123 (194)
T 1mf7_A 65 N--PNP-------RSLVKPITQLLGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPL------------ 123 (194)
T ss_dssp S--CCH-------HHHHTTCCCCCSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSS------------
T ss_pred H--HHH-------HHHHHhCcCCCCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCch------------
Confidence 0 112 22334444 479999999999998643 21 1 1246889999999988 521
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCCC-----ccccccccC
Q 042398 250 KTIKSIVAASSYPLSIVLVGVGDGP-----WEDMQKFDD 283 (422)
Q Consensus 250 ~T~~aIv~AS~~PlSIiiVGVG~~~-----f~~m~~LD~ 283 (422)
...+++.++....+.|..||||+.. ...|+.+-+
T Consensus 124 ~~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~L~~iA~ 162 (194)
T 1mf7_A 124 GYEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIAS 162 (194)
T ss_dssp CGGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHCCCEEEEEEecccccccccHHHHHHHhC
Confidence 1123344445578999999999853 455555543
No 84
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=97.45 E-value=0.001 Score=60.04 Aligned_cols=131 Identities=13% Similarity=0.156 Sum_probs=89.0
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccC---CCCCcceeeecCCCCCCCCCcccCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFD---EDNLIPCFGFGDATTHDQEVFSFHDD 175 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD---~D~~ip~~GFGa~~~~~~~vf~~~~~ 175 (422)
+++++.||-|.|.+ | ++++...+..++..++ .+-.+-++.|+.... .+|+|+.
T Consensus 7 ~div~vlD~SgSm~-------------------~-~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~---~~~~l~~- 62 (200)
T 1v7p_C 7 IDVVVVCDESNSIY-------------------P-WDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPR---VVFNLNT- 62 (200)
T ss_dssp EEEEEEEECCTTCC-------------------C-HHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEE---EEECTTT-
T ss_pred ccEEEEEECCCCcc-------------------c-HHHHHHHHHHHHHhcCCCCCceEEEEEEECCCce---EEEeCCC-
Confidence 68999999999983 0 5666777777777776 567899999987642 2455541
Q ss_pred CCCCCCHHHHHHHHHhhCCcccc-cC-CCChHHHHHHHHHH-HHHc----CCceEEEEEEeCCcccccCCCCCCCCchhH
Q 042398 176 HTPCHGFEEVLACYRNIVPNLRL-AG-PTSYAPVVEAAMDI-VEKS----GGQYHVLVIIADGQVTRSVNTGDGELSSQE 248 (422)
Q Consensus 176 ~~~~~G~~gvl~~Y~~~l~~v~l-~G-PT~fapiI~~a~~~-~~~~----~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~ 248 (422)
-...+.++++-.. +.. .| -|+...-|+.+.+. .... .+.-.++++||||..+|.
T Consensus 63 ---~~~~~~~~~~i~~----l~~~~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~------------ 123 (200)
T 1v7p_C 63 ---YKTKEEMIVATSQ----TSQYGGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDG------------ 123 (200)
T ss_dssp ---CSSHHHHHHHHHH----CCCCCCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCG------------
T ss_pred ---cCCHHHHHHHHHh----hhccCCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCc------------
Confidence 1346666665443 333 35 59999999999875 2221 234678999999998872
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCC
Q 042398 249 QKTIKSIVAASSYPLSIVLVGVGD 272 (422)
Q Consensus 249 ~~T~~aIv~AS~~PlSIiiVGVG~ 272 (422)
....+++..+.+..+-|..||||+
T Consensus 124 ~~~~~~~~~~~~~gi~i~~igvg~ 147 (200)
T 1v7p_C 124 SMLKAVIDQCNHDNILRFGIAVLG 147 (200)
T ss_dssp GGHHHHHHHHHHTTEEEEEEEECH
T ss_pred ccHHHHHHHHHHCCCEEEEEEecc
Confidence 122344455556789999999964
No 85
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.00062 Score=66.08 Aligned_cols=161 Identities=14% Similarity=0.175 Sum_probs=109.9
Q ss_pred ceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhcccccc---CCCCCcceeeecCCCCCCCCCc-ccCCCC
Q 042398 101 LILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPF---DEDNLIPCFGFGDATTHDQEVF-SFHDDH 176 (422)
Q Consensus 101 l~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~y---D~D~~ip~~GFGa~~~~~~~vf-~~~~~~ 176 (422)
.+|.||-|.|+... +-.||.++.+..++-.++..+ +....+-+..|++... .|. ++.
T Consensus 6 tViviD~S~SM~~~-------------D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~---~vl~plT--- 66 (268)
T 4b4t_W 6 TVLVIDNSEYSRNG-------------DFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANP---RVLSTFT--- 66 (268)
T ss_dssp EEEEECCSSTTSST-------------TSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSC---EEEEEEE---
T ss_pred EEEEEECCHHHhCC-------------CCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcc---eeccCCc---
Confidence 68899999998521 113688887777776666643 4556888888976432 221 221
Q ss_pred CCCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHc--CCceEEEEEEeCCcccccCCCCCCCCchhHHHHHHH
Q 042398 177 TPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKS--GGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKS 254 (422)
Q Consensus 177 ~~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~--~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~a 254 (422)
.....++. .+..++..|-|++..-|+.|....+.. ...-..++|+|||.+.+. .++.+++
T Consensus 67 ---~D~~~il~----aL~~l~~~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~~-----------~~~l~~l 128 (268)
T 4b4t_W 67 ---AEFGKILA----GLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDS-----------RDELIRL 128 (268)
T ss_dssp ---SCHHHHHH----HHTTCCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSC-----------HHHHHHH
T ss_pred ---chHHHHHH----HhhhcCcCCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCCC-----------HHHHHHH
Confidence 23455544 466788999999999999999888754 234566678889887752 6778888
Q ss_pred HHHhcCCCeeEEEEecCCCCc--cccccccCCCCCcccccceecch
Q 042398 255 IVAASSYPLSIVLVGVGDGPW--EDMQKFDDKIPAREFDNFQFVNF 298 (422)
Q Consensus 255 Iv~AS~~PlSIiiVGVG~~~f--~~m~~LD~~~~~r~rDnvqFV~f 298 (422)
+..+.+.-++|=+||+|.+++ +.|+.|=+......-|+-+||..
T Consensus 129 ak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng~~~~~s~~v~v 174 (268)
T 4b4t_W 129 AKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTV 174 (268)
T ss_dssp HHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCSSTTTSCEEEEE
T ss_pred HHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcCCCCCceeEEEe
Confidence 888888889999999987654 55777632222212367777764
No 86
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=97.30 E-value=0.00042 Score=70.98 Aligned_cols=153 Identities=13% Similarity=0.124 Sum_probs=98.5
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccc---cCCCCCcceeeecCCCCCCCCCcccCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAP---FDEDNLIPCFGFGDATTHDQEVFSFHDD 175 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~---yD~D~~ip~~GFGa~~~~~~~vf~~~~~ 175 (422)
+++++.||-|+|.+. +.++.|...+..++.. +..+-.+-++.|+.... .++.++
T Consensus 2 ~div~vlD~SgSM~~------------------~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~---~~~~~~-- 58 (497)
T 1rrk_A 2 MNIYLVLDGSDSIGA------------------SNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPK---IWVKVS-- 58 (497)
T ss_dssp EEEEEEEECSTTTCH------------------HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEE---EEECTT--
T ss_pred eeEEEEEECCCCcch------------------hhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCce---Eeeccc--
Confidence 578999999999851 4456665555555554 55567899999997532 223332
Q ss_pred CCCCCCHHHHHHHHHhhCCcc-cccCCCChHHHHHHHHHHHHHc--------CCceEEEEEEeCCcccccCCCCCCCCch
Q 042398 176 HTPCHGFEEVLACYRNIVPNL-RLAGPTSYAPVVEAAMDIVEKS--------GGQYHVLVIIADGQVTRSVNTGDGELSS 246 (422)
Q Consensus 176 ~~~~~G~~gvl~~Y~~~l~~v-~l~GPT~fapiI~~a~~~~~~~--------~~~Y~VLlIiTDG~i~d~~~~~~~~~~~ 246 (422)
.+.-...+.+.++-..+-+.- ...|.|+...-|+.|.+..... ...-.++++||||.-++..|
T Consensus 59 ~~~~~~~~~~~~~l~~l~~~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~-------- 130 (497)
T 1rrk_A 59 EADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGD-------- 130 (497)
T ss_dssp SGGGGCHHHHHHHHHHCCGGGSCCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSC--------
T ss_pred cccccCHHHHHHHHHhCcCccccccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCCC--------
Confidence 222345666666554443222 2568899999999999876321 12457889999998875221
Q ss_pred hHHHHHHHHHHhc----------CCCeeEEEEecCC-CCccccccccC
Q 042398 247 QEQKTIKSIVAAS----------SYPLSIVLVGVGD-GPWEDMQKFDD 283 (422)
Q Consensus 247 ~~~~T~~aIv~AS----------~~PlSIiiVGVG~-~~f~~m~~LD~ 283 (422)
..+..+.+.+.. +..+-|..||||+ .+...|+.|-+
T Consensus 131 -~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~igvG~~~~~~~L~~iA~ 177 (497)
T 1rrk_A 131 -PITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS 177 (497)
T ss_dssp -THHHHHHHHHHTTCSSCC-CCCGGGEEEEEEECSSSCCHHHHHHHSC
T ss_pred -hhHHHHHHHHHhhhhcccccchhcCeeEEEecCCCccCHHHHHHHhc
Confidence 345555555542 2278899999997 46667777654
No 87
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.13 E-value=0.00012 Score=55.48 Aligned_cols=43 Identities=12% Similarity=0.119 Sum_probs=36.9
Q ss_pred CCccccccccccc-ccc-cCCCccchhhhhcC----CCCCCccccccCc
Q 042398 375 TQACPICLTNAKD-LAF-GCGHMTCRECGSRV----SNCPICRQRITNR 417 (422)
Q Consensus 375 ~~~CpIC~~~~~~-v~l-~CGH~fC~~Ci~~~----~~CP~CR~~i~~~ 417 (422)
.+.|+||++.+.+ ++. +|||.||..|+.+| ..||+++.++...
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 3689999999999 666 89999999999976 5699999998643
No 88
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=96.99 E-value=0.00079 Score=72.44 Aligned_cols=150 Identities=14% Similarity=0.133 Sum_probs=95.6
Q ss_pred cccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhcc---ccccCCCCCcceeeecCCCCCCCCCcccCC
Q 042398 98 SSNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKT---LAPFDEDNLIPCFGFGDATTHDQEVFSFHD 174 (422)
Q Consensus 98 ~~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~i---l~~yD~D~~ip~~GFGa~~~~~~~vf~~~~ 174 (422)
.+++++.||-|.|.+. +.+++|...+..+ |..++..-.|-++-|+.... .+++|+.
T Consensus 243 ~~div~vlD~SgSM~~------------------~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~---~~~~l~~ 301 (741)
T 3hrz_D 243 SMNIYLVLDGSGSIGA------------------SDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPK---IWVKVSE 301 (741)
T ss_dssp EEEEEEEEECSTTTCH------------------HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEE---EEECTTS
T ss_pred ceeEEEEeccCCcccc------------------cchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCc---eeEeecc
Confidence 4789999999999852 1244444444444 44445556799999987532 2344433
Q ss_pred CCCCCCCHHHHHHHHHhhCCccc-----ccCCCChHHHHHHHHHHHHH--------cCCceEEEEEEeCCcccccCCCCC
Q 042398 175 DHTPCHGFEEVLACYRNIVPNLR-----LAGPTSYAPVVEAAMDIVEK--------SGGQYHVLVIIADGQVTRSVNTGD 241 (422)
Q Consensus 175 ~~~~~~G~~gvl~~Y~~~l~~v~-----l~GPT~fapiI~~a~~~~~~--------~~~~Y~VLlIiTDG~i~d~~~~~~ 241 (422)
.+ -...+.++++- ..+. ..|-|+...-|+.|.+.... ....-.++|+||||+-++-.
T Consensus 302 ~~--~~~~~~~~~~i----~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~---- 371 (741)
T 3hrz_D 302 AD--SSNADWVTKQL----NEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG---- 371 (741)
T ss_dssp GG--GGCHHHHHHHH----TTCCGGGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSS----
T ss_pred cC--CcCHHHHHHHH----HhcccccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCC----
Confidence 11 13455565543 4444 68899999999999987621 11245789999999876421
Q ss_pred CCCchhHHHHHHHHHH----------hcCCCeeEEEEecCC-CCccccccccC
Q 042398 242 GELSSQEQKTIKSIVA----------ASSYPLSIVLVGVGD-GPWEDMQKFDD 283 (422)
Q Consensus 242 ~~~~~~~~~T~~aIv~----------AS~~PlSIiiVGVG~-~~f~~m~~LD~ 283 (422)
+ .....+.|.+ +.+..+-|..||||+ .+...|++|-.
T Consensus 372 ---~--p~~~~~~i~~~~~~~~~a~~~~~~gi~i~~igvG~~~~~~~L~~ia~ 419 (741)
T 3hrz_D 372 ---D--PITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS 419 (741)
T ss_dssp ---C--THHHHHHHHHHTTCSSCTTCCCGGGEEEEEEECSSSCCHHHHHHHSC
T ss_pred ---C--chHHHHHHHHHhhcccccccccccCeeEEEEeCCCcCCHHHHHHHhc
Confidence 1 2455555553 345678999999997 56677777654
No 89
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.90 E-value=0.00035 Score=58.14 Aligned_cols=41 Identities=24% Similarity=0.532 Sum_probs=33.7
Q ss_pred ccccccccccc--ccccCCCccchhhhhc-----CCCCCCccccccCc
Q 042398 377 ACPICLTNAKD--LAFGCGHMTCRECGSR-----VSNCPICRQRITNR 417 (422)
Q Consensus 377 ~CpIC~~~~~~--v~l~CGH~fC~~Ci~~-----~~~CP~CR~~i~~~ 417 (422)
.|++|--..+. -.+||.|.||.+|+.. ...||.|+.++...
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 58889877777 3569999999999964 36899999998754
No 90
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=96.78 E-value=0.00091 Score=60.59 Aligned_cols=138 Identities=9% Similarity=0.207 Sum_probs=91.3
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccC---CCCCcceeeecCCCCCCCCCcccCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFD---EDNLIPCFGFGDATTHDQEVFSFHDD 175 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD---~D~~ip~~GFGa~~~~~~~vf~~~~~ 175 (422)
+++++.||-|.|.+. +.++++...+-.++..|+ ++-.|-+..|+.... ..|+|+.
T Consensus 22 ~DivfvlD~S~Sm~~------------------~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~---~~~~l~~- 79 (199)
T 3zqk_A 22 LDVAFVLEGSDKIGE------------------ADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVT---VEYPFSE- 79 (199)
T ss_dssp CEEEEEEECCTTTCH------------------HHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEE---EEECTTS-
T ss_pred cCEEEEEECCCCCCH------------------HHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCccc---EEEecCC-
Confidence 789999999999851 345666666777777774 667899999997642 2455542
Q ss_pred CCCCCCHHHHHHHHHhhCCcccccCC-CChHHHHHHHHHHH-HH-c---CCceEEEEEEeCCcccccCCCCCCCCchhHH
Q 042398 176 HTPCHGFEEVLACYRNIVPNLRLAGP-TSYAPVVEAAMDIV-EK-S---GGQYHVLVIIADGQVTRSVNTGDGELSSQEQ 249 (422)
Q Consensus 176 ~~~~~G~~gvl~~Y~~~l~~v~l~GP-T~fapiI~~a~~~~-~~-~---~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~ 249 (422)
-...+.++++-.+. +. ..|. |+...-|+.+.+.. .. . .+.-.++++||||...|.. +
T Consensus 80 ---~~~~~~~~~~i~~l-~~--~gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d~v-----------~ 142 (199)
T 3zqk_A 80 ---AQSKGDILQRLREI-RY--QGGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEI-----------K 142 (199)
T ss_dssp ---CCCHHHHHHHHHHC-CC--CCCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSSCC-----------C
T ss_pred ---cCCHHHHHHHHHhC-cC--CCCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCchHH-----------H
Confidence 13456666654432 21 3454 99999888887632 11 1 1234789999999977622 0
Q ss_pred HHHHHHHHhcCCCeeEEEEecC-CCCccccccccC
Q 042398 250 KTIKSIVAASSYPLSIVLVGVG-DGPWEDMQKFDD 283 (422)
Q Consensus 250 ~T~~aIv~AS~~PlSIiiVGVG-~~~f~~m~~LD~ 283 (422)
+ + ...+.|.-|||| +.+.+.|+.+-.
T Consensus 143 ~-------~-~~~v~v~~iGiG~~~~~~~L~~iA~ 169 (199)
T 3zqk_A 143 R-------L-PGDIQVVPIGVGPNANVQELERIGW 169 (199)
T ss_dssp C-------C-CTTEEEEEEEESTTCCHHHHHHHHT
T ss_pred H-------H-hCCCEEEEEEcCCCCCHHHHHHHhC
Confidence 0 1 156889999999 677888887754
No 91
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=96.75 E-value=0.008 Score=64.35 Aligned_cols=156 Identities=11% Similarity=0.182 Sum_probs=100.7
Q ss_pred cceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccc---cCCCCCcceeeecCCCCCC----CCCccc
Q 042398 100 NLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAP---FDEDNLIPCFGFGDATTHD----QEVFSF 172 (422)
Q Consensus 100 nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~---yD~D~~ip~~GFGa~~~~~----~~vf~~ 172 (422)
.++++||.+.|+.... .+..++..+.|+..|..+++. ....-.|-++.||...+.. .+++-+
T Consensus 37 ~ivf~IDvS~SM~~~d-----------~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~v~ 105 (609)
T 1jey_A 37 SLIFLVDASKAMFESQ-----------SEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVL 105 (609)
T ss_dssp EEEEEEECSGGGGCCC-----------SSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEE
T ss_pred EEEEEEECCHHHcCCC-----------CCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeEEE
Confidence 4899999999986321 022479999999999999885 3344589999999876421 233322
Q ss_pred CC-CCCCCCCHHHHHHHHHhhCC---------cccccCCCChHHHHHHHHHHHHHcCCc--eEEEEEEeCCcccccCCCC
Q 042398 173 HD-DHTPCHGFEEVLACYRNIVP---------NLRLAGPTSYAPVVEAAMDIVEKSGGQ--YHVLVIIADGQVTRSVNTG 240 (422)
Q Consensus 173 ~~-~~~~~~G~~gvl~~Y~~~l~---------~v~l~GPT~fapiI~~a~~~~~~~~~~--Y~VLlIiTDG~i~d~~~~~ 240 (422)
.+ +.+ +.+ .+...+..+. .+...+.|.+...|..|+++.+....+ =-++++||||.-.
T Consensus 106 ~~L~~~---~~~-~ik~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p------ 175 (609)
T 1jey_A 106 QELDNP---GAK-RILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNP------ 175 (609)
T ss_dssp EEEECC---CHH-HHHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCT------
T ss_pred ecCCCC---CHH-HHHHHHHHhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCC------
Confidence 22 111 222 2222222221 011245799999999999888765333 3588899999643
Q ss_pred CCCCchhHHHHHHHHHHhcCCCeeEEEEecCCCC-cc
Q 042398 241 DGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGP-WE 276 (422)
Q Consensus 241 ~~~~~~~~~~T~~aIv~AS~~PlSIiiVGVG~~~-f~ 276 (422)
++.-+........++..+..+-+.|.+||||..+ |+
T Consensus 176 ~~~~~~~~~~~~~~a~~l~~~gI~i~~igig~~~~fd 212 (609)
T 1jey_A 176 HGNDSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFD 212 (609)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTEEEEEEEBCCTTCCC
T ss_pred CCCchHHHHHHHHHHHHHHhcCcEEEEEecCCCCccc
Confidence 2222233456677888889999999999999753 44
No 92
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.71 E-value=0.0016 Score=51.32 Aligned_cols=46 Identities=20% Similarity=0.448 Sum_probs=37.0
Q ss_pred CCcCCccccccccccc-c-cccCCCccchhhhhcC------CCCCCccccccCc
Q 042398 372 VAETQACPICLTNAKD-L-AFGCGHMTCRECGSRV------SNCPICRQRITNR 417 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~-v-~l~CGH~fC~~Ci~~~------~~CP~CR~~i~~~ 417 (422)
.+....|.||++.+.. . -..|+|.|...|+.+| ..||+||..+...
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred cCCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 4556799999999886 2 2289999999999965 5799999987643
No 93
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=96.30 E-value=0.0084 Score=53.21 Aligned_cols=138 Identities=19% Similarity=0.262 Sum_probs=85.3
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCC-CcceeeecCCCCCCCCCcccCCCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDN-LIPCFGFGDATTHDQEVFSFHDDHT 177 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~-~ip~~GFGa~~~~~~~vf~~~~~~~ 177 (422)
+++++.||-|.|.+. ..++++...+..++..++.++ .+-+..|+.... .+|+|+...
T Consensus 3 ~divfvlD~S~Sm~~------------------~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~---~~~~l~~~~- 60 (179)
T 1mjn_A 3 VDLVFLFDGSMSLQP------------------DEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYK---TEFDFSDYV- 60 (179)
T ss_dssp EEEEEEEECBTTCCH------------------HHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEE---EEECHHHHH-
T ss_pred ccEEEEEeCCCCCCH------------------HHHHHHHHHHHHHHHHhCCCCeEEEEEEECCcee---EEEcCcccC-
Confidence 678999999999851 235666677777777775554 799999987642 234443100
Q ss_pred CCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHH-HHc----CCceEEEEEEeCCcccccCCCCCCCCchhHHHHH
Q 042398 178 PCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIV-EKS----GGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTI 252 (422)
Q Consensus 178 ~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~-~~~----~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~ 252 (422)
.-..++.++ ..++. +.|-|+...-|+.|.+.. ... .+.-.++++||||.-+|..+ .
T Consensus 61 ~~~~~~~~~----~~i~~--~~g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~~-----~-------- 121 (179)
T 1mjn_A 61 KRKDPDALL----KHVKH--MLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGN-----I-------- 121 (179)
T ss_dssp HHCCHHHHH----TTCCC--CCBCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCSC-----C--------
T ss_pred CHHHHHHHH----Hhccc--CCCCChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCcc-----h--------
Confidence 001222222 23333 458899999999988532 211 23468999999999887321 0
Q ss_pred HHHHHhcCCCeeEEEEecCCCCc-----ccccccc
Q 042398 253 KSIVAASSYPLSIVLVGVGDGPW-----EDMQKFD 282 (422)
Q Consensus 253 ~aIv~AS~~PlSIiiVGVG~~~f-----~~m~~LD 282 (422)
+...-+-|..||||+..- ..|+.+=
T Consensus 122 -----~~~~~i~i~~igvG~~~~~~~~~~~L~~iA 151 (179)
T 1mjn_A 122 -----DAAKDIIRYIIGIGKHFQTKESQETLHKFA 151 (179)
T ss_dssp -----GGGTTSEEEEEEESGGGCSHHHHHTTGGGS
T ss_pred -----HHHCCCEEEEEEccccccccccHHHHHHHh
Confidence 012357788899997532 4555553
No 94
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=96.17 E-value=0.0045 Score=70.60 Aligned_cols=142 Identities=15% Similarity=0.296 Sum_probs=94.3
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCC-CCcceeeecCCCCCCCCCcccCC--C
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDED-NLIPCFGFGDATTHDQEVFSFHD--D 175 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D-~~ip~~GFGa~~~~~~~vf~~~~--~ 175 (422)
+++++.||-|.|.+ .+.++++...+-.+++.|+.+ -.|-+..|+.... .+|+|+. +
T Consensus 131 ~DIvfvlD~SgSm~------------------~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~---~~~~lt~~~~ 189 (1095)
T 3k6s_A 131 QDIVFLIDGSGSIS------------------SRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQ---THFTFEEFRR 189 (1095)
T ss_dssp EEEEEEEECCTTSC------------------SHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEE---EEECSHHHHS
T ss_pred ccEEEEEcCCCCCC------------------hhHHHHHHHHHHHHHHhccccccEEEEEEECCeEE---EEecCcccCC
Confidence 78999999998874 145777888888888888865 5788899987642 2354432 1
Q ss_pred CCCCCCHHHHHHHHHhhCCcc-cccCCCChHHHHHHHHHHHH-H-c---CCceEEEEEEeCCccc-ccCCCCCCCCchhH
Q 042398 176 HTPCHGFEEVLACYRNIVPNL-RLAGPTSYAPVVEAAMDIVE-K-S---GGQYHVLVIIADGQVT-RSVNTGDGELSSQE 248 (422)
Q Consensus 176 ~~~~~G~~gvl~~Y~~~l~~v-~l~GPT~fapiI~~a~~~~~-~-~---~~~Y~VLlIiTDG~i~-d~~~~~~~~~~~~~ 248 (422)
. ..+ .+.+..+ .+.|-|+.+.-|++|.+..- . . .+.-.|+++||||+.+ |.
T Consensus 190 ~---~~l-------~~ai~~i~~~gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~------------ 247 (1095)
T 3k6s_A 190 S---SNP-------LSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDS------------ 247 (1095)
T ss_dssp C---SCG-------GGGTTTCCCCCSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCS------------
T ss_pred H---HHH-------HHHHhhhhcccCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCc------------
Confidence 1 111 1223333 45789999999999876432 1 1 1235799999999985 42
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCC-----CccccccccC
Q 042398 249 QKTIKSIVAASSYPLSIVLVGVGDG-----PWEDMQKFDD 283 (422)
Q Consensus 249 ~~T~~aIv~AS~~PlSIiiVGVG~~-----~f~~m~~LD~ 283 (422)
....+++.+|...-+-|..||||++ +.+.|+++-+
T Consensus 248 ~~~~~~a~~~r~~GI~i~aIGVG~~~~~~~d~~eL~~IAs 287 (1095)
T 3k6s_A 248 LDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIAS 287 (1095)
T ss_dssp SCHHHHHHHHHHHCEEECCEEBSSGGGSTTSSHHHHTTSC
T ss_pred hhHHHHHHHHHHCCCEEEEEecccccccccCHHHHHHHHc
Confidence 1234444445555788999999987 6666766654
No 95
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.09 E-value=0.0018 Score=64.98 Aligned_cols=46 Identities=22% Similarity=0.525 Sum_probs=36.3
Q ss_pred CcCCccccccccccc-c--------cccCCCccchhhhhcC---------------CCCCCccccccCcc
Q 042398 373 AETQACPICLTNAKD-L--------AFGCGHMTCRECGSRV---------------SNCPICRQRITNRL 418 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~-v--------~l~CGH~fC~~Ci~~~---------------~~CP~CR~~i~~~i 418 (422)
.....|+||+....+ - ...|||.|+..|+.+| ..||.||.+++..+
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 456799999987765 1 2379999999999865 25999999997654
No 96
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=95.96 E-value=0.021 Score=60.39 Aligned_cols=144 Identities=15% Similarity=0.209 Sum_probs=96.1
Q ss_pred cceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccc---cCCCCCcceeeecCCCCCC--------CC
Q 042398 100 NLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAP---FDEDNLIPCFGFGDATTHD--------QE 168 (422)
Q Consensus 100 nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~---yD~D~~ip~~GFGa~~~~~--------~~ 168 (422)
.++++||.+.|+.... .+ .++..+.|...+..+++. ....-.+-++.||...+.. .+
T Consensus 9 ~iv~~iDvS~SM~~~d-----------~~-~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~y~~ 76 (565)
T 1jey_B 9 AVVLCMDVGFTMSNSI-----------PG-IESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQN 76 (565)
T ss_dssp EEEEEEECCGGGGCCB-----------TT-BCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTT
T ss_pred EEEEEEECChHhcccC-----------CC-CCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccCCCc
Confidence 6899999999986320 11 479999999999999983 5666789999999865311 12
Q ss_pred CcccCC-CCCCCCCHHHHHHHHHhhCCccccc-CCCChHHHHHHHHHHHHHc--CCce--EEEEEEeCCcccccCCCCCC
Q 042398 169 VFSFHD-DHTPCHGFEEVLACYRNIVPNLRLA-GPTSYAPVVEAAMDIVEKS--GGQY--HVLVIIADGQVTRSVNTGDG 242 (422)
Q Consensus 169 vf~~~~-~~~~~~G~~gvl~~Y~~~l~~v~l~-GPT~fapiI~~a~~~~~~~--~~~Y--~VLlIiTDG~i~d~~~~~~~ 242 (422)
++-+.+ +. .. ..+++.... .+..+ +.|.+...|..|++..+.. ..++ -++++||||+-.- +
T Consensus 77 i~vl~~l~~---~~-~~~l~~l~~---~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~------~ 143 (565)
T 1jey_B 77 ITVHRHLML---PD-FDLLEDIES---KIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRF------S 143 (565)
T ss_dssp EEEEEEEEC---CC-HHHHHHHHT---TCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCC------C
T ss_pred eEEeecCCC---CC-HHHHHHHHh---hccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCC------C
Confidence 221111 01 11 134444333 23333 6799999999999887665 3334 5789999997542 1
Q ss_pred CCchhHHHHHHHHHHhcCCCeeEE-EEecCCC
Q 042398 243 ELSSQEQKTIKSIVAASSYPLSIV-LVGVGDG 273 (422)
Q Consensus 243 ~~~~~~~~T~~aIv~AS~~PlSIi-iVGVG~~ 273 (422)
.....+++..+.+.-+.|. +||+|..
T Consensus 144 -----~~~~~~~a~~l~~~gI~i~~vig~g~~ 170 (565)
T 1jey_B 144 -----KSQLDIIIHSLKKCDISLQFFLPFSLG 170 (565)
T ss_dssp -----CTTHHHHHHHHHHTTEEEEEEESSCCC
T ss_pred -----HHHHHHHHHHHHhcCcEEEEEeccCCC
Confidence 1245566777888899999 8999864
No 97
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=95.59 E-value=0.081 Score=55.52 Aligned_cols=139 Identities=12% Similarity=0.138 Sum_probs=83.5
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCCCcceeeecCCCCCCCCCcccCCCCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHTP 178 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~~ 178 (422)
.++++.||-|+|+.... .+++ .. +.++.-.++-+.. - .+..+-++.|++... .+++.++
T Consensus 369 ~~v~lvvD~SgSM~~~~----~~~~-------l~-~~~~Aa~l~~~~~-~-~~d~vglv~Fs~~~~----~~~~t~~--- 427 (538)
T 1yvr_A 369 KRFLLAIDVSASMNQRV----LGSI-------LN-ASVVAAAMCMLVA-R-TEKDSHMVAFSDEML----PCPITVN--- 427 (538)
T ss_dssp CCEEEEEECSGGGGSBS----TTSS-------CB-HHHHHHHHHHHHH-H-HCSSEEEEEESSSEE----CCSCCTT---
T ss_pred ceEEEEEECccccCCCC----CCCc-------HH-HHHHHHHHHHHHh-c-cCCceEEEEECCCce----EcCCCCc---
Confidence 67999999999996421 0111 22 3333222221111 1 233588899986321 2233332
Q ss_pred CCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcCCceEEEEEEeCCcccccCCCCCCCCchhHHHHHHHHHHh
Q 042398 179 CHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAA 258 (422)
Q Consensus 179 ~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~A 258 (422)
.++..+++.-. .+ ..|-|+++..|..+.+. ....-++++||||+.++. ..+ ..+..+.+.+.
T Consensus 428 -~~l~~~l~~l~----~~-~~GgT~i~~aL~~a~~~----~~~~~~iIliTDg~~~~g------~~~--~~~~l~~~~~~ 489 (538)
T 1yvr_A 428 -MLLHEVVEKMS----DI-TMGSTDCALPMLWAQKT----NTAADIFIVFTDCETNVE------DVH--PATALKQYREK 489 (538)
T ss_dssp -SCHHHHHHHHT----TC-CCSCCCTTHHHHHHHHT----TCCCSEEEEEECCCCCSS------SCC--HHHHHHHHHHH
T ss_pred -ccHHHHHHHHh----cC-CCCCCcHHHHHHHHHhc----cCCCCEEEEEcCCCCCCC------CCC--HHHHHHHHHHH
Confidence 34666665433 22 57889999999888754 234578899999987651 111 23555666666
Q ss_pred cCCCeeEEEEecCCCCcc
Q 042398 259 SSYPLSIVLVGVGDGPWE 276 (422)
Q Consensus 259 S~~PlSIiiVGVG~~~f~ 276 (422)
.+.++.+++||+|.....
T Consensus 490 ~~~~v~l~~igig~~~~~ 507 (538)
T 1yvr_A 490 MGIPAKLIVCAMTSNGFS 507 (538)
T ss_dssp HTCCCEEEEEECSSSSEE
T ss_pred hCCCcEEEEEEecCCCCc
Confidence 678899999999986544
No 98
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.31 E-value=0.0082 Score=45.11 Aligned_cols=44 Identities=25% Similarity=0.482 Sum_probs=33.2
Q ss_pred CcCCccccccccccc-ccccCC--C---ccchhhhhcC------CCCCCccccccC
Q 042398 373 AETQACPICLTNAKD-LAFGCG--H---MTCRECGSRV------SNCPICRQRITN 416 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~-v~l~CG--H---~fC~~Ci~~~------~~CP~CR~~i~~ 416 (422)
++...|.||++...+ ..+||. | .+...|+.+| ..||+|+..+..
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 355789999987554 445864 4 6899999976 579999998753
No 99
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=95.12 E-value=0.19 Score=52.88 Aligned_cols=140 Identities=13% Similarity=0.131 Sum_probs=84.5
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCCCcceeeecCCCCCCCCCcccCCCCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHTP 178 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~~ 178 (422)
.+++|+||-|+|+.+.+ ... ....+..+-| ..++-++.. ..| .+-++.|++.... .++.++
T Consensus 363 ~~~lv~vDvSgSM~~~~-------~~~--~~k~~~~e~A-a~la~~~~r-~~d-~v~lv~Fs~~~~~----~~~~~~--- 423 (535)
T 2nvo_A 363 TRHLLALDVSGSMTCGD-------VAG--VPGLTPNMAA-AAMSLIALR-TEP-DALTMGFAEQFRP----LGITPR--- 423 (535)
T ss_dssp SEEEEEECCSGGGGSCC-------GGG--CTTCCHHHHH-HHHHHHHHH-HSS-EEEEEEEBSSEEE----CCCCTT---
T ss_pred ceEEEEEECCccccCCC-------CCC--CCcccHHHHH-HHHHHHHcC-cCC-ceEEEEECCcceE----cCCCcc---
Confidence 67899999999996411 001 1124544444 455544333 222 5888999874311 122222
Q ss_pred CCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcCCceEEEEEEeCCcccccCCCCCCCCchhHHHHHHHHHHh
Q 042398 179 CHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAA 258 (422)
Q Consensus 179 ~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~A 258 (422)
.++.++++. +... ..|.|+++..|+.+.+ ....+-+++|||||+..+ |..+| .+.++...+.
T Consensus 424 -~~l~~~l~~---l~~~--~~ggTdi~~~l~~a~~----~~~~~~~vIliTD~~~~~------g~~~~--~~al~~~r~~ 485 (535)
T 2nvo_A 424 -DTLESAMQK---AQSV--SFGGTDCAQPILWAAQ----ERLDVDTFVVYTDNETWA------GQVHP--TVALDQYAQK 485 (535)
T ss_dssp -CCHHHHHHH---TCCS--SBCCCCTTHHHHHHHH----TTCCCSEEEEEESSCCCC------CSSCH--HHHHHHHHHH
T ss_pred -hhHHHHHHH---HhhC--CCCCccHHHHHHHHHH----hcCCCCEEEEEeCCCccC------CCCCH--HHHHHHHHHh
Confidence 455555543 2222 3689999998877643 234567889999998765 22233 3455666666
Q ss_pred cCCCeeEEEEecCCCCc
Q 042398 259 SSYPLSIVLVGVGDGPW 275 (422)
Q Consensus 259 S~~PlSIiiVGVG~~~f 275 (422)
.+.+.-+++||||....
T Consensus 486 ~~~~~klv~i~l~~~~~ 502 (535)
T 2nvo_A 486 MGRAPKLIVVGLTATEF 502 (535)
T ss_dssp HSCCCEEEEEETTCSCC
T ss_pred hCCCCeEEEEeccCCCc
Confidence 67799999999998643
No 100
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=92.26 E-value=0.13 Score=42.23 Aligned_cols=49 Identities=29% Similarity=0.592 Sum_probs=39.0
Q ss_pred CCcCCcccccccccccccccCCCccchhhhhcC----CCCCCccccccCcccc
Q 042398 372 VAETQACPICLTNAKDLAFGCGHMTCRECGSRV----SNCPICRQRITNRLRL 420 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~v~l~CGH~fC~~Ci~~~----~~CP~CR~~i~~~i~v 420 (422)
....+.|..|+-..+..+--..|-.|..|+..+ ..||+|..++.+++++
T Consensus 25 ~~G~~nCKsCWf~~k~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 25 HLGPQFCKSCWFENKGLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CSCCCCCCSSCSCCSSEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred ccCcccChhhccccCCeeeecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 566689999997777544344687899999965 5799999999988875
No 101
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=89.12 E-value=0.14 Score=41.43 Aligned_cols=30 Identities=30% Similarity=0.654 Sum_probs=24.2
Q ss_pred cCCcccccccc-ccc-cc--ccCCCccchhhhhc
Q 042398 374 ETQACPICLTN-AKD-LA--FGCGHMTCRECGSR 403 (422)
Q Consensus 374 e~~~CpIC~~~-~~~-v~--l~CGH~fC~~Ci~~ 403 (422)
++..|+||.+. ..+ +. +.|+|.||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 45789999975 445 44 69999999999985
No 102
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=88.08 E-value=0.3 Score=39.04 Aligned_cols=31 Identities=29% Similarity=0.726 Sum_probs=25.6
Q ss_pred CcCCcccccccccccccc-cC----CCccchhhhhc
Q 042398 373 AETQACPICLTNAKDLAF-GC----GHMTCRECGSR 403 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~v~l-~C----GH~fC~~Ci~~ 403 (422)
...+.|.+|.+.+.+..| .| +|.||.-|...
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~ 48 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRE 48 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHH
Confidence 345899999999999665 77 68899999873
No 103
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=82.44 E-value=0.54 Score=44.51 Aligned_cols=42 Identities=21% Similarity=0.476 Sum_probs=33.5
Q ss_pred CCccccccccccccc--ccCCCccchhhhhcC------CCCCCccccccC
Q 042398 375 TQACPICLTNAKDLA--FGCGHMTCRECGSRV------SNCPICRQRITN 416 (422)
Q Consensus 375 ~~~CpIC~~~~~~v~--l~CGH~fC~~Ci~~~------~~CP~CR~~i~~ 416 (422)
...|.+|.+....-. -.|+|.|+..|+.++ ..||.|+.....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 568999999887622 249999999999864 379999998754
No 104
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=78.14 E-value=6.5 Score=43.90 Aligned_cols=125 Identities=16% Similarity=0.201 Sum_probs=70.9
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhcccccc--CCCCCcceeeecCCCCCCC---------
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPF--DEDNLIPCFGFGDATTHDQ--------- 167 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~y--D~D~~ip~~GFGa~~~~~~--------- 167 (422)
+.+++.||.|+|+... .+. .....+++-.++-.++..+ ..+-.|-+..|+.......
T Consensus 225 ~DIVfVLD~SGSM~~~--------~~~----~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~ 292 (893)
T 2ww8_A 225 LDVVILLDNSNSMSNI--------RNK----NARRAERAGEATRSLIDKITSDSENRVALVTYASTIFDGTEFTVEKGVA 292 (893)
T ss_dssp EEEEEEEECCGGGCTT--------HHH----HCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBCBSCEEEEECCEE
T ss_pred ccEEEEEeCCCCCCCc--------Ccc----chhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCccccccccccccccc
Confidence 6799999999999631 000 0123444333333333333 3467899999997532100
Q ss_pred ----CCcc-----------cC-CCCCCC-----CCHHHHHHHHHhhCCc----------ccccCCCChHHHHHHHHHHHH
Q 042398 168 ----EVFS-----------FH-DDHTPC-----HGFEEVLACYRNIVPN----------LRLAGPTSYAPVVEAAMDIVE 216 (422)
Q Consensus 168 ----~vf~-----------~~-~~~~~~-----~G~~gvl~~Y~~~l~~----------v~l~GPT~fapiI~~a~~~~~ 216 (422)
.+.+ |. ...+.| ...+.+ +..+..++. +...|-|+...-|..|+++.+
T Consensus 293 ~~~g~~~n~~~~w~~~~t~~t~~~~~~~~lpLT~d~~~i-~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~ 371 (893)
T 2ww8_A 293 DKNGKRLNDSLFWNYDQTSFTTNTKDYSYLKLTNDKNDI-VELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILT 371 (893)
T ss_dssp CTTCCEECCCTTSCTTCCEEEEECCBCCEEEEECCHHHH-HHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccCCHHHH-HHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHH
Confidence 0000 00 001122 223333 334555654 445788999999999998876
Q ss_pred H-c-CCceEEEEEEeCCccccc
Q 042398 217 K-S-GGQYHVLVIIADGQVTRS 236 (422)
Q Consensus 217 ~-~-~~~Y~VLlIiTDG~i~d~ 236 (422)
. . ...=-++++||||+-++.
T Consensus 372 ~~~~~~~~kvIILLTDG~pt~~ 393 (893)
T 2ww8_A 372 QQARQNSQKVIFHITDGVPTMS 393 (893)
T ss_dssp HHSCSSSEEEEEEEESSCCSEE
T ss_pred hhcccCCCeEEEEEcCCCCCcc
Confidence 4 2 233468899999998763
No 105
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=73.88 E-value=4.6 Score=37.51 Aligned_cols=109 Identities=12% Similarity=0.094 Sum_probs=59.2
Q ss_pred ccceeeeeccCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhccccccCCCCCcceeeecCCCCCCCCCcccCCCCCC
Q 042398 99 SNLILGIDFTKSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHTP 178 (422)
Q Consensus 99 ~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~N~Y~~AI~~ig~il~~yD~D~~ip~~GFGa~~~~~~~vf~~~~~~~~ 178 (422)
+.|.+.+|+|.|+++ + .+.-+..+..|.+-|+.+..+-.|-+-+|.++. ..++++|+.
T Consensus 4 vDl~fl~D~S~SM~~------------d----i~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~--~~~~l~lT~---- 61 (212)
T 2iue_A 4 VDLYFLMGLSGSAQG------------H----LSNVQTLGSDLLKALNEISRSGRIGFGSIVNMT--FQHILKLTA---- 61 (212)
T ss_dssp EEEEEEEECCGGGTT------------T----HHHHHHHHHHHHHHHHHHCSCEEEEEEEESSSC--EEEEEEEES----
T ss_pred eEEEEEEeCCCcchh------------H----HHHHHHHHHHHHHHHHhhCcCceEEEEEEEcCc--ceecCCcCC----
Confidence 678999999999973 1 234555666666666666555443333333441 123344432
Q ss_pred CCCHHHHHHHHHhhCCcccccC----CCChHHHHHHHH---HHHHHcCCceEEEEEEeCCccccc
Q 042398 179 CHGFEEVLACYRNIVPNLRLAG----PTSYAPVVEAAM---DIVEKSGGQYHVLVIIADGQVTRS 236 (422)
Q Consensus 179 ~~G~~gvl~~Y~~~l~~v~l~G----PT~fapiI~~a~---~~~~~~~~~Y~VLlIiTDG~i~d~ 236 (422)
.++.. .+.+.....+| |-.--.-|.+|+ +...... .-++||++||+..+..
T Consensus 62 --d~~~F----~~~v~~~~vsg~~D~PE~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~H~~ 119 (212)
T 2iue_A 62 --DSSQF----QRELRKQLVSGKLATPKGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDNDFHLA 119 (212)
T ss_dssp --CHHHH----HHHHHTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSCBCCT
T ss_pred --CHHHH----HHHHhhccccCCCCCCchHHHHHHHHHHhhhhcccCC-ccEEEEEECcCCcccc
Confidence 23333 33344455555 443333333333 1222334 5799999999988763
No 106
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=68.91 E-value=3.1 Score=39.51 Aligned_cols=42 Identities=14% Similarity=0.283 Sum_probs=28.1
Q ss_pred ceEEEEEEeCCcccccCCCCCCCCchhHHHHHHHHHHhcCCCeeEEEEecCCCC
Q 042398 221 QYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGP 274 (422)
Q Consensus 221 ~Y~VLlIiTDG~i~d~~~~~~~~~~~~~~~T~~aIv~AS~~PlSIiiVGVG~~~ 274 (422)
.--++++||||+-+- |. .| .++...|...-+-|-.||||+.+
T Consensus 9 ~~k~iillTDG~~~~------g~-~p-----~~aa~~a~~~gi~v~tIGig~~~ 50 (242)
T 3rag_A 9 TIRQILVITDGCSNI------GP-DP-----VEAARRAHRHGIVVNVIGIVGRG 50 (242)
T ss_dssp CEEEEEEEESSCCCS------SS-CH-----HHHHHHHHHTTCEEEEEEECCSS
T ss_pred CccEEEEEccCCCCC------CC-CH-----HHHHHHHHHCCCEEEEEEecCCc
Confidence 356889999998653 11 22 23334566677899999998764
No 107
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=64.66 E-value=7.7 Score=30.47 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=28.1
Q ss_pred CCCCCCCcCCcccccccccccc-----cccCCCccchhhhhc
Q 042398 367 RGSTPVAETQACPICLTNAKDL-----AFGCGHMTCRECGSR 403 (422)
Q Consensus 367 ~s~~~~~e~~~CpIC~~~~~~v-----~l~CGH~fC~~Ci~~ 403 (422)
+.|.+-.+...|.+|...+.-. -..||+.||..|...
T Consensus 13 ~~W~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 13 GYWQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp SCCCCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CccccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 3566666778999999987652 128999999999774
No 108
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.83 E-value=8.2 Score=30.27 Aligned_cols=36 Identities=28% Similarity=0.581 Sum_probs=27.1
Q ss_pred CCCCCCCcCCcccccccccccc-----cccCCCccchhhhh
Q 042398 367 RGSTPVAETQACPICLTNAKDL-----AFGCGHMTCRECGS 402 (422)
Q Consensus 367 ~s~~~~~e~~~CpIC~~~~~~v-----~l~CGH~fC~~Ci~ 402 (422)
+.|.+-.+...|.+|...+.-. -..||..||..|..
T Consensus 6 ~~W~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 6 SGRYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSCSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CccccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 4455566677999999987542 12899999999976
No 109
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=56.67 E-value=7.7 Score=30.95 Aligned_cols=36 Identities=25% Similarity=0.498 Sum_probs=26.6
Q ss_pred CCCCCCcCCcccccccccccc-----cccCCCccchhhhhc
Q 042398 368 GSTPVAETQACPICLTNAKDL-----AFGCGHMTCRECGSR 403 (422)
Q Consensus 368 s~~~~~e~~~CpIC~~~~~~v-----~l~CGH~fC~~Ci~~ 403 (422)
.|.+..+...|.+|...+.-. -..||+.||..|...
T Consensus 13 ~W~~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 13 TWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred cCcccccCCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 454555667899999877641 238999999999874
No 110
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=49.79 E-value=8.9 Score=28.61 Aligned_cols=35 Identities=29% Similarity=0.782 Sum_probs=27.0
Q ss_pred Ccccccccccccc-cc---cCCCccchhhhh----cCCCCCCc
Q 042398 376 QACPICLTNAKDL-AF---GCGHMTCRECGS----RVSNCPIC 410 (422)
Q Consensus 376 ~~CpIC~~~~~~v-~l---~CGH~fC~~Ci~----~~~~CP~C 410 (422)
..|-.|+..+.+. .+ .|++.||.+|-. .+..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 3588898888662 23 789999999976 45789988
No 111
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=48.13 E-value=9.9 Score=32.19 Aligned_cols=35 Identities=26% Similarity=0.526 Sum_probs=25.5
Q ss_pred CCCCCcCCcccccccccccc-----cccCCCccchhhhhc
Q 042398 369 STPVAETQACPICLTNAKDL-----AFGCGHMTCRECGSR 403 (422)
Q Consensus 369 ~~~~~e~~~CpIC~~~~~~v-----~l~CGH~fC~~Ci~~ 403 (422)
|.+-.+...|.+|...+.-. --.||+.||..|...
T Consensus 63 W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 63 WAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred cccCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 43444557899999887642 128999999999774
No 112
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=46.62 E-value=10 Score=29.57 Aligned_cols=36 Identities=25% Similarity=0.501 Sum_probs=25.3
Q ss_pred CCCCCCcCCcccccccccccc-----cccCCCccchhhhhc
Q 042398 368 GSTPVAETQACPICLTNAKDL-----AFGCGHMTCRECGSR 403 (422)
Q Consensus 368 s~~~~~e~~~CpIC~~~~~~v-----~l~CGH~fC~~Ci~~ 403 (422)
.|.+-.+...|.+|...+.-. -..||..||..|...
T Consensus 12 ~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 12 AWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp ---CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred ccccCccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 344455667899999887652 128999999999874
No 113
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=44.21 E-value=21 Score=28.91 Aligned_cols=43 Identities=35% Similarity=0.756 Sum_probs=30.9
Q ss_pred cCCccccccccccc-----ccc---cCCCccchhhhhc-----CCCCCCccccccC
Q 042398 374 ETQACPICLTNAKD-----LAF---GCGHMTCRECGSR-----VSNCPICRQRITN 416 (422)
Q Consensus 374 e~~~CpIC~~~~~~-----v~l---~CGH~fC~~Ci~~-----~~~CP~CR~~i~~ 416 (422)
....|.||-+..-. +.. .|+--.|..|..- ...||.|..++.+
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 34699999987543 222 5666679999882 3789999998763
No 114
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=44.20 E-value=10 Score=28.85 Aligned_cols=45 Identities=20% Similarity=0.422 Sum_probs=30.6
Q ss_pred CCcCCccccccccccc--ccc--cCCCccchhhhhcC--------CCCCCccccccC
Q 042398 372 VAETQACPICLTNAKD--LAF--GCGHMTCRECGSRV--------SNCPICRQRITN 416 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~--v~l--~CGH~fC~~Ci~~~--------~~CP~CR~~i~~ 416 (422)
..+...|.+|...... ++. .|...|...|+.-. -.||.|+..+..
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 3455679999876433 333 67777888998621 469999887654
No 115
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=42.43 E-value=5.3 Score=39.94 Aligned_cols=48 Identities=23% Similarity=0.555 Sum_probs=0.0
Q ss_pred CCCCCCCcCCcccccccccccc-----cccCCCccchhhhhc-----------CCCCCCccccc
Q 042398 367 RGSTPVAETQACPICLTNAKDL-----AFGCGHMTCRECGSR-----------VSNCPICRQRI 414 (422)
Q Consensus 367 ~s~~~~~e~~~CpIC~~~~~~v-----~l~CGH~fC~~Ci~~-----------~~~CP~CR~~i 414 (422)
+.|.+..+...|.+|...+.-. -..||+.||..|... .+.|-.|-..+
T Consensus 367 p~w~~~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 367 PTLVPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCCCcccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 3344455567899999876541 238999999999863 14577775544
No 116
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=37.32 E-value=30 Score=37.53 Aligned_cols=49 Identities=14% Similarity=0.353 Sum_probs=30.5
Q ss_pred HHHHHhhCCcccccC----CCC-hHHHHHHHH--HHHHHcCCceEEEEEEeCCccc
Q 042398 186 LACYRNIVPNLRLAG----PTS-YAPVVEAAM--DIVEKSGGQYHVLVIIADGQVT 234 (422)
Q Consensus 186 l~~Y~~~l~~v~l~G----PT~-fapiI~~a~--~~~~~~~~~Y~VLlIiTDG~i~ 234 (422)
++.+.+.+.++..+| |-. |.-|++.|. +......+..++||++||..-+
T Consensus 200 ~~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rllv~~TDa~~H 255 (690)
T 3fcs_B 200 VTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTH 255 (690)
T ss_dssp HHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBC
T ss_pred HHHHHHHhhceeccCCCCCCchHHHHHHHHhhcccccCCCCCceEEEEEECCCccc
Confidence 455666677777766 333 444444442 3333344568999999998766
No 117
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=36.78 E-value=6.7 Score=32.28 Aligned_cols=39 Identities=33% Similarity=0.777 Sum_probs=23.4
Q ss_pred cCCcccccccccccccccCCCccchhhhhcC---CCCCCcccccc
Q 042398 374 ETQACPICLTNAKDLAFGCGHMTCRECGSRV---SNCPICRQRIT 415 (422)
Q Consensus 374 e~~~CpIC~~~~~~v~l~CGH~fC~~Ci~~~---~~CP~CR~~i~ 415 (422)
.+..||+|...+... =++..|..|-... ..||-|.+++.
T Consensus 31 M~~~CP~Cq~eL~~~---g~~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 31 MELHCPQCQHVLDQD---NGHARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCCBCSSSCSBEEEE---TTEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred ccccCccCCCcceec---CCEEECccccchhhccccCcchhhHHH
Confidence 347999999776542 1233366665543 45777766654
No 118
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=34.76 E-value=21 Score=28.28 Aligned_cols=31 Identities=23% Similarity=0.424 Sum_probs=23.5
Q ss_pred CcCCcccccccccccc-----cccCCCccchhhhhc
Q 042398 373 AETQACPICLTNAKDL-----AFGCGHMTCRECGSR 403 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~v-----~l~CGH~fC~~Ci~~ 403 (422)
.+...|.+|...+.-. -..||+.||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 4556899999877652 238999999999763
No 119
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=34.09 E-value=68 Score=24.53 Aligned_cols=39 Identities=15% Similarity=0.343 Sum_probs=22.4
Q ss_pred CcCCccccccccccc-ccccCCCccchhhhhcCCCCCCcccccc
Q 042398 373 AETQACPICLTNAKD-LAFGCGHMTCRECGSRVSNCPICRQRIT 415 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~-v~l~CGH~fC~~Ci~~~~~CP~CR~~i~ 415 (422)
.....|..|...... .+..-+..++.+| ..|-.|+..+.
T Consensus 23 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~C----F~C~~C~~~L~ 62 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAVVKARDKYRHPEC----FVCADCNLNLK 62 (89)
T ss_dssp CSCCBCTTTCCBCCSCCEESSSCEECTTT----CCCSSSCCCTT
T ss_pred CcCCCcccCCCEecccEEEECCceECccC----CEecCCCCCCC
Confidence 344689999987776 3224444444444 34556666554
No 120
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=34.05 E-value=50 Score=30.42 Aligned_cols=28 Identities=25% Similarity=0.714 Sum_probs=21.8
Q ss_pred CCcccccccccccc-----cccCCCccchhhhh
Q 042398 375 TQACPICLTNAKDL-----AFGCGHMTCRECGS 402 (422)
Q Consensus 375 ~~~CpIC~~~~~~v-----~l~CGH~fC~~Ci~ 402 (422)
...|.+|...+.-. -..||+.||..|..
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCC
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcC
Confidence 35899999877642 23899999999977
No 121
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=33.11 E-value=18 Score=30.67 Aligned_cols=40 Identities=23% Similarity=0.633 Sum_probs=26.6
Q ss_pred CcCCcccccccccccc-----cccCCCccchhhhhcC----CCCCCccc
Q 042398 373 AETQACPICLTNAKDL-----AFGCGHMTCRECGSRV----SNCPICRQ 412 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~v-----~l~CGH~fC~~Ci~~~----~~CP~CR~ 412 (422)
.+...|..|...+.-. -..||..||..|.... ..|-.|-.
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 3446899999877542 2389999999997742 45666644
No 122
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=32.87 E-value=16 Score=27.94 Aligned_cols=32 Identities=28% Similarity=0.579 Sum_probs=23.7
Q ss_pred CCcCCcccccccccccccccC-CCccchhhhhc
Q 042398 372 VAETQACPICLTNAKDLAFGC-GHMTCRECGSR 403 (422)
Q Consensus 372 ~~e~~~CpIC~~~~~~v~l~C-GH~fC~~Ci~~ 403 (422)
.++..-|.||.+-..---+.| |..||..|...
T Consensus 5 ~ee~pWC~ICneDAtlrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 5 SSGLPWCCICNEDATLRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CCCCSSCTTTCSCCCEEETTTTSEEECSSHHHH
T ss_pred CcCCCeeEEeCCCCeEEecCCCCceehHHHHHH
Confidence 355678999998744334578 78899999884
No 123
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=29.61 E-value=23 Score=34.67 Aligned_cols=41 Identities=20% Similarity=0.573 Sum_probs=29.7
Q ss_pred CcCCccccccccccc-ccc----cCCC--ccchhhhhcC----CCCCCcccc
Q 042398 373 AETQACPICLTNAKD-LAF----GCGH--MTCRECGSRV----SNCPICRQR 413 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~-v~l----~CGH--~fC~~Ci~~~----~~CP~CR~~ 413 (422)
.....||||-....- ++. .=|+ ..|..|...| ..||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 346799999998876 322 1343 4699999877 579999875
No 124
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=27.91 E-value=2.3e+02 Score=22.54 Aligned_cols=41 Identities=22% Similarity=0.433 Sum_probs=26.0
Q ss_pred CcCCccccccccccc-ccc--c--CC-CccchhhhhcC------CCCCCccccc
Q 042398 373 AETQACPICLTNAKD-LAF--G--CG-HMTCRECGSRV------SNCPICRQRI 414 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~-v~l--~--CG-H~fC~~Ci~~~------~~CP~CR~~i 414 (422)
.+...| +|...... ++. . |. ..|+..|+.-. -.||.|+..-
T Consensus 34 ~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 445667 99885434 333 4 54 46888887621 4699998754
No 125
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=27.82 E-value=42 Score=26.89 Aligned_cols=31 Identities=19% Similarity=0.491 Sum_probs=23.8
Q ss_pred CcCCccccccccccccccc---CCCccchhhhhc
Q 042398 373 AETQACPICLTNAKDLAFG---CGHMTCRECGSR 403 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~v~l~---CGH~fC~~Ci~~ 403 (422)
..+..|.||-....+..+| |+-+|...|+.+
T Consensus 13 ~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r 46 (89)
T 1wil_A 13 VNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRR 46 (89)
T ss_dssp CCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHH
T ss_pred CCCcccCccccccccceeccccccccccHhhccc
Confidence 3567999999776666664 578899999985
No 126
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=27.64 E-value=22 Score=27.50 Aligned_cols=22 Identities=36% Similarity=0.847 Sum_probs=17.7
Q ss_pred cCCCccchhhhhcCCCCCCcccc
Q 042398 391 GCGHMTCRECGSRVSNCPICRQR 413 (422)
Q Consensus 391 ~CGH~fC~~Ci~~~~~CP~CR~~ 413 (422)
.||+.||..|...+.. -.|...
T Consensus 55 ~C~~~FC~~C~~~wH~-~~C~~~ 76 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE-GECSAV 76 (80)
T ss_dssp CCSCCEETTTTEECCS-SCSSSC
T ss_pred CCCCeeccccCccccC-Cccccc
Confidence 5999999999998866 667553
No 127
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=27.60 E-value=43 Score=30.54 Aligned_cols=29 Identities=21% Similarity=0.615 Sum_probs=22.3
Q ss_pred CCcccccccccccc-----cccCCCccchhhhhc
Q 042398 375 TQACPICLTNAKDL-----AFGCGHMTCRECGSR 403 (422)
Q Consensus 375 ~~~CpIC~~~~~~v-----~l~CGH~fC~~Ci~~ 403 (422)
...|.+|...+.-. -..||+.||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 46999999877642 128999999999763
No 128
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=25.82 E-value=34 Score=25.89 Aligned_cols=27 Identities=37% Similarity=0.694 Sum_probs=21.2
Q ss_pred Ccccccccccccc-----cccCCCccchhhhh
Q 042398 376 QACPICLTNAKDL-----AFGCGHMTCRECGS 402 (422)
Q Consensus 376 ~~CpIC~~~~~~v-----~l~CGH~fC~~Ci~ 402 (422)
..|.+|...+.-. -..||..||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 4799999877642 12899999999976
No 129
>3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii}
Probab=24.78 E-value=1.2e+02 Score=31.18 Aligned_cols=148 Identities=15% Similarity=0.220 Sum_probs=79.6
Q ss_pred ccccHHHHHHHHHhcCCccccceeeeeccCCCCCCCCCCCCCCCcccCCCC--CC---HHHHHHHHHhccccccCCCCCc
Q 042398 80 TFSSLEQVTAALRDSGLESSNLILGIDFTKSNEWTGKVSFNNRSLHAIGDT--PN---PYEKAITIIGKTLAPFDEDNLI 154 (422)
Q Consensus 80 ~~~~ld~i~~~l~~~G~~~~nl~vaIDfT~SN~~~g~~~~~~~SLH~~~~~--~N---~Y~~AI~~ig~il~~yD~D~~i 154 (422)
.-.-||.|..|+.++|.+ -.+.+|+|+.+|--+..+. ..--|.+-++. .+ ..+++|.-.-+.++.|+
T Consensus 227 ~~eaL~ll~~Ai~~aGy~-~~i~i~lD~Aasefy~~~~--g~Y~l~fk~~~~~~~~~~t~~Elid~y~~lle~yp----- 298 (452)
T 3otr_A 227 AEEALNLLVEAIKAAGYE-GKIKIAFDAAASEFYKQDE--KKYDLDYKCKTKNASKHLTGEKLKEVYEGWLKKYP----- 298 (452)
T ss_dssp HHHHHHHHHHHHHHHTCT-TTSEEEEECCGGGGEETTT--TEEETTTTCSSCCGGGEECHHHHHHHHHHHHHHSC-----
T ss_pred HHHHHHHHHHHHHHcCCC-ceEEEccccchHhheeccC--CeEEeeccCCCCcccccccHHHHHHHHHHHHhhhC-----
Confidence 344588999999999998 6899999999986431000 00012111110 11 25888888888887765
Q ss_pred ceeeecCCCCCCCCCcccCCCCCCCCCHHHHHHHHHhhCCcccccCCCChHHHHHHHHHHHHHcCCceEEEEE-E-eCCc
Q 042398 155 PCFGFGDATTHDQEVFSFHDDHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSGGQYHVLVI-I-ADGQ 232 (422)
Q Consensus 155 p~~GFGa~~~~~~~vf~~~~~~~~~~G~~gvl~~Y~~~l~~v~l~GPT~fapiI~~a~~~~~~~~~~Y~VLlI-i-TDG~ 232 (422)
+.-+=+ +|.+ ..++++-....+.-..+++-|-..|.--.+.+.+..+... ..+++| + -=|.
T Consensus 299 -Iv~IED---------Pl~~-----dD~eg~a~Lt~~lg~~iqIvGDDl~vTn~~~i~~~Ie~~a--~n~IlIKvnQIGg 361 (452)
T 3otr_A 299 -IISVED---------PFDQ-----DDFASFSAFTKDVGEKTQVIGDDILVTNILRIEKALKDKA--CNCLLLKVNQIGS 361 (452)
T ss_dssp -EEEEEC---------CSCT-----TCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHHTC--CSEEEECHHHHCC
T ss_pred -ceEEec---------CCCh-----hhHHHHHHHHHhhCCCeEEEeCccccCCHHHHHHHHhcCC--CCEEEeecccccc
Confidence 222211 1111 3466665555554446777776554211233333333322 222222 1 1244
Q ss_pred ccccCCCCCCCCchhHHHHHHHHHHhcCCCeeEEE
Q 042398 233 VTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVL 267 (422)
Q Consensus 233 i~d~~~~~~~~~~~~~~~T~~aIv~AS~~PlSIii 267 (422)
|| ++++++.-|-..-+.+++
T Consensus 362 IT---------------Ealka~~lA~~~G~~vmv 381 (452)
T 3otr_A 362 VT---------------EAIEACLLAQKSGWGVQV 381 (452)
T ss_dssp HH---------------HHHHHHHHHHHTTCEEEE
T ss_pred HH---------------HHHHHHHHHHHcCCeEEE
Confidence 54 677777777666655544
No 130
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=23.67 E-value=1.1e+02 Score=23.85 Aligned_cols=27 Identities=22% Similarity=0.597 Sum_probs=18.9
Q ss_pred cCCcccccccccccccc--cCCCccchhh
Q 042398 374 ETQACPICLTNAKDLAF--GCGHMTCREC 400 (422)
Q Consensus 374 e~~~CpIC~~~~~~v~l--~CGH~fC~~C 400 (422)
....|..|...+.-+.+ .||..||..-
T Consensus 24 ~~nRC~~CrKkvgL~gf~CrCg~~FCs~H 52 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCRCGNLFCGLH 52 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECTTSCEECSSS
T ss_pred cCCcChhhCCcccccCeecCCCCEechhc
Confidence 34689999887555334 5888898654
No 131
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=23.44 E-value=29 Score=25.60 Aligned_cols=30 Identities=23% Similarity=0.562 Sum_probs=18.0
Q ss_pred CCccccccccccc------cccc---CCCccchhhhhcC
Q 042398 375 TQACPICLTNAKD------LAFG---CGHMTCRECGSRV 404 (422)
Q Consensus 375 ~~~CpIC~~~~~~------v~l~---CGH~fC~~Ci~~~ 404 (422)
...||-|...... ++-. |++.||..|...+
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCS
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCc
Confidence 3578888765543 2222 6677777776654
No 132
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=23.38 E-value=36 Score=34.19 Aligned_cols=43 Identities=28% Similarity=0.620 Sum_probs=30.8
Q ss_pred CcCCccccccccccccc--ccCCCccchhhhh--------cCCCCCCcccccc
Q 042398 373 AETQACPICLTNAKDLA--FGCGHMTCRECGS--------RVSNCPICRQRIT 415 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~v~--l~CGH~fC~~Ci~--------~~~~CP~CR~~i~ 415 (422)
.-.+.||+-...+...+ ..|.|.-|.+-.. ..-.||+|...+.
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 34479999998888733 3899997765433 2257999988764
No 133
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=21.06 E-value=1e+02 Score=23.95 Aligned_cols=28 Identities=21% Similarity=0.516 Sum_probs=19.6
Q ss_pred CcCCcccccccccccccc--cCCCccchhh
Q 042398 373 AETQACPICLTNAKDLAF--GCGHMTCREC 400 (422)
Q Consensus 373 ~e~~~CpIC~~~~~~v~l--~CGH~fC~~C 400 (422)
.....|..|.....-+.+ .||..||..-
T Consensus 23 ~~~~RC~~C~kkvgL~~f~CrCg~~FCs~H 52 (74)
T 1wfp_A 23 STATRCLSCNKKVGVTGFKCRCGSTFCGTH 52 (74)
T ss_dssp CCCCBCSSSCCBCTTTCEECTTSCEECTTT
T ss_pred ccCccchhhcCcccccceEeccCCEecccc
Confidence 345689999876555333 6888898764
Done!