BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042401
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CFE|A Chain A, P14a, Nmr, 20 Structures
Length = 135
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 58/115 (50%), Gaps = 21/115 (18%)
Query: 28 TQQRYVHLHNEAPRNVGIGIGMTWDKTLEDHSHSYALKLKVDCIIEHSIRHYGKNLGWAD 87
+ Q Y+ +HN+A VG+G M+WD L + +YA DC + HS G+NL
Sbjct: 3 SPQDYLAVHNDARAQVGVGP-MSWDANLASRAQNYANSRAGDCNLIHS--GAGENLAKGG 59
Query: 88 YDFTVDHIVKMWM------------------CGHYTQVVWRKSVGLGCAKERCNN 124
DFT V++W+ C HYTQVVWR SV LGC + RCNN
Sbjct: 60 GDFTGRAAVQLWVSERPSYNYATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNN 114
>pdb|1SMB|A Chain A, Crystal Structure Of Golgi-Associated Pr-1 Protein
Length = 154
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 21/104 (20%)
Query: 36 HNEAPRNVGIGIGMTWDKTLEDHSHSYALKLKVDCIIEHSIR----HYGKNLGWADYDFT 91
HNE + G+ + K L + Y+ L I++HS G+NL WA YD T
Sbjct: 17 HNEYRQKHGVPP-LKLXKNLNREAQQYSEALASTRILKHSPESSRGQXGENLAWASYDQT 75
Query: 92 VDHIVKMWM----------------CGHYTQVVWRKSVGLGCAK 119
+ W GH+T +VW+ + +G K
Sbjct: 76 GKEVADRWYSEIKNYNFQQPGFTSGTGHFTAMVWKNTKKMGVGK 119
>pdb|3Q2R|A Chain A, Crystal Structure Of Sglipr1 Soaked With Zinc Chloride
pdb|3Q2U|A Chain A, Structure Of Human Glioma Pathogenesis-Related Protein 1
Reveals Unique Loops And Surface Motifs
Length = 205
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 87 DYDFTVDHIVKMWMCGHYTQVVWRKSVGLGCAKERC 122
DYDF I K +CGHYTQVVW S +GCA + C
Sbjct: 108 DYDFKT-RICKK-VCGHYTQVVWADSYKVGCAVQFC 141
>pdb|4AIW|A Chain A, Gapr-1 With Bound Inositol Hexakisphosphate
Length = 154
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 21/117 (17%)
Query: 23 SANNATQQRYVHLHNEAPRNVGIGIGMTWDKTLEDHSHSYALKLKVDCIIEHSIRHY--- 79
SA+ + HNE + G+ + K L + Y+ L I++HS
Sbjct: 4 SASKQFHNEVLKAHNEYRQKHGVPP-LKLXKNLNREAQQYSEALASTRILKHSPESSRGQ 62
Query: 80 -GKNLGWADYDFTVDHIVKMWM----------------CGHYTQVVWRKSVGLGCAK 119
G+NL WA YD T + W GH+T +VW+ + +G K
Sbjct: 63 CGENLAWASYDQTGKEVADRWYSEIKNYNFQQPGFTSGTGHFTAMVWKNTKKMGVGK 119
>pdb|1U53|A Chain A, Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein From The
Nematode Parasite Necator Americanus And A Vaccine
Antigen For Human Hookworm Infection
Length = 196
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 11/108 (10%)
Query: 18 RIHLSSANNATQQRYVHLHNEAPRNVGIGIGMTWDKTLED-HSHSYALKLKVDCIIEHSI 76
+ ++ NNA Q + H + +G I M+ D ++ + A K + E +
Sbjct: 58 EVEKTAMNNAKQCVFKHSQPNQRKGLGENIFMSSDSGMDKAKAAEQASKAWFGELAEKGV 117
Query: 77 RHYGKNLGWADYDFTVDHIVKMWMCGHYTQVVWRKSVGLGCAKERCNN 124
G+NL F+ GHYTQ+VW+++V LGC E C+N
Sbjct: 118 ---GQNLKLTGGLFSRG-------VGHYTQMVWQETVKLGCYVEACSN 155
>pdb|1RC9|A Chain A, Crystal Structure Of Stecrisp, A Member Of Crisp Family
From Trimeresurus Stejnegeri Refined At 1.6 Angstroms
Resolution: Structual Relationship Of The Two Domains
Length = 221
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 46/124 (37%), Gaps = 34/124 (27%)
Query: 29 QQRYVHLHNEAPRNVGIG----IGMTWDKTLEDHSHSYALKLKVDCIIEHSIRHY----- 79
Q V LHN R+V + M W D++ +A + CI HS
Sbjct: 15 QNEIVDLHNSLRRSVNPTASNMLRMEWYPEAADNAERWAYR----CIESHSSYESRVIEG 70
Query: 80 ---GKNLGWADYDFTVDHIVKMW------------------MCGHYTQVVWRKSVGLGCA 118
G+N+ + Y I+ W + GHYTQ+VW KS +GCA
Sbjct: 71 IKCGENIYMSPYPMKWTDIIHAWHDEYKDFKYGVGADPPNAVTGHYTQIVWYKSYRIGCA 130
Query: 119 KERC 122
C
Sbjct: 131 AAYC 134
>pdb|2DDA|A Chain A, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|B Chain B, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|C Chain C, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|D Chain D, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
Length = 211
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 34/127 (26%)
Query: 29 QQRYVHLHNEAPRNVGIG----IGMTWDKTLEDHSHSYALKLKVDCIIEHSIRHY----- 79
Q+ V HN R+V + M W+ ++ +A + C HS +
Sbjct: 7 QKEIVDKHNALRRSVKPTARNMLQMKWNSRAAQNAKRWANR----CTFAHSPPNKRTVGK 62
Query: 80 ---GKNLGWADYDFTVDHIVKMW------------------MCGHYTQVVWRKSVGLGCA 118
G+N+ + F +V+ W + GHYTQVVW KS +GCA
Sbjct: 63 LRCGENIFMSSQPFPWSGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSYLIGCA 122
Query: 119 KERCNNN 125
+C+++
Sbjct: 123 SAKCSSS 129
>pdb|1WVR|A Chain A, Crystal Structure Of A Crisp Family Ca-Channel Blocker
Derived From Snake Venom
Length = 221
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 85 WADYDFTVDHIVKMWMCGHYTQVVWRKSVGLGCAKERC 122
+ D+ + V + + GHYTQ+VW KS GCA C
Sbjct: 97 YKDFKYGVGAVPSDAVIGHYTQIVWYKSYRAGCAAAYC 134
>pdb|2DDB|A Chain A, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|B Chain B, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|C Chain C, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|D Chain D, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|A Chain A, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|B Chain B, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|C Chain C, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|D Chain D, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
Length = 210
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 34/127 (26%)
Query: 29 QQRYVHLHNEAPRNVGIG----IGMTWDKTLEDHSHSYALKLKVDCIIEHSIRHY----- 79
Q+ V HN R+V + M W+ H+ A + C HS +
Sbjct: 6 QKEIVDKHNALRRSVKPTARNMLQMKWN----SHAAQNAKRWADRCTFAHSPPNTRTVGK 61
Query: 80 ---GKNLGWADYDFTVDHIVKMW------------------MCGHYTQVVWRKSVGLGCA 118
G+N+ + F +V+ W + GHYTQVVW KS +GCA
Sbjct: 62 LRCGENIFMSSQPFPWSGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSHLIGCA 121
Query: 119 KERCNNN 125
+C+++
Sbjct: 122 SAKCSSS 128
>pdb|3NT8|A Chain A, Crystal Structure Of Na-Asp-1
pdb|3NT8|B Chain B, Crystal Structure Of Na-Asp-1
Length = 424
Score = 32.3 bits (72), Expect = 0.075, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 102 GHYTQVVWRKSVGLGCAKERCNN 124
GHYTQ+ W + LGCA CN+
Sbjct: 357 GHYTQMAWDTTYKLGCAVVFCND 379
>pdb|2VZN|A Chain A, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
pdb|2VZN|B Chain B, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
Length = 218
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 102 GHYTQVVWRKSVGLGCAK 119
GHYTQ+VW K+ +GC +
Sbjct: 161 GHYTQIVWAKTTKIGCGR 178
>pdb|1XTA|A Chain A, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
pdb|1XTA|B Chain B, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
Length = 221
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 102 GHYTQVVWRKSVGLGCAKERC 122
GHYTQ+VW ++ GCA C
Sbjct: 114 GHYTQIVWYQTYRAGCAVSYC 134
>pdb|1XX5|A Chain A, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|B Chain B, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|C Chain C, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|2GIZ|A Chain A, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|2GIZ|B Chain B, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|3MZ8|A Chain A, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
pdb|3MZ8|B Chain B, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
Length = 221
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 102 GHYTQVVWRKSVGLGCAKERC 122
GHYTQ+VW ++ GCA C
Sbjct: 114 GHYTQIVWYQTYRAGCAVSYC 134
>pdb|1QNX|A Chain A, Ves V 5, An Allergen From Vespula Vulgaris Venom
Length = 209
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 73 EHSIRHYGKNLGWADYDFTVDHIVKMWMCGHYTQVVWRKSVGLGCA 118
E ++ Y ++ DF GHYTQ+VW + +GC
Sbjct: 139 EDEVKDYNPKKKFSGNDFL--------KTGHYTQMVWANTKEVGCG 176
>pdb|3NZQ|A Chain A, Crystal Structure Of Biosynthetic Arginine Decarboxylase
Adc (Spea) From Escherichia Coli, Northeast Structural
Genomics Consortium Target Er600
pdb|3NZQ|B Chain B, Crystal Structure Of Biosynthetic Arginine Decarboxylase
Adc (Spea) From Escherichia Coli, Northeast Structural
Genomics Consortium Target Er600
Length = 666
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 14/59 (23%)
Query: 32 YVHLH----NEAPRNVGIGIGMTWDKTLEDHSHSYALKLKVDCIIEHSIRHYGKNLGWA 86
YV LH N +VG G+G+ ++ T + + DC + + + Y N+ WA
Sbjct: 294 YVELHKLGVNIQCFDVGGGLGVDYEGT----------RSQSDCSVNYGLNEYANNIIWA 342
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,973,939
Number of Sequences: 62578
Number of extensions: 152128
Number of successful extensions: 450
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 431
Number of HSP's gapped (non-prelim): 28
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)