Query 042401
Match_columns 126
No_of_seqs 149 out of 1038
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 05:53:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042401.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042401hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05381 SCP_PR-1_like SCP_PR-1 100.0 4.4E-30 9.6E-35 173.5 10.9 94 30-124 2-114 (136)
2 cd05384 SCP_PRY1_like SCP_PRY1 100.0 1.5E-29 3.3E-34 169.4 10.1 94 28-124 2-111 (129)
3 cd05382 SCP_GAPR-1_like SCP_GA 100.0 2.6E-29 5.6E-34 168.5 7.2 97 27-124 1-117 (132)
4 cd00168 SCP SCP: SCP-like extr 100.0 1.7E-28 3.6E-33 162.8 9.5 91 30-125 2-113 (122)
5 cd05385 SCP_GLIPR-1_like SCP_G 100.0 2.1E-28 4.5E-33 167.0 9.9 94 27-125 1-128 (144)
6 cd05383 SCP_CRISP SCP_CRISP: S 100.0 9.3E-28 2E-32 162.7 10.0 94 28-125 2-125 (138)
7 cd05559 SCP_HrTT-1 SCP_HrTT-1: 99.9 1.2E-27 2.6E-32 161.9 9.1 92 29-124 1-119 (136)
8 smart00198 SCP SCP / Tpx-1 / A 99.9 2.8E-27 6.2E-32 160.7 10.1 93 28-125 2-130 (144)
9 cd05380 SCP_euk SCP_euk: SCP-l 99.9 3.2E-26 6.9E-31 154.7 9.0 91 29-124 1-131 (144)
10 KOG3017 Defense-related protei 99.9 7.8E-25 1.7E-29 158.9 4.7 94 27-125 40-172 (225)
11 TIGR02909 spore_YkwD uncharact 99.9 9E-23 2E-27 136.7 10.7 96 27-125 3-117 (127)
12 PF00188 CAP: Cysteine-rich se 99.8 2.1E-18 4.5E-23 110.8 7.8 88 33-125 1-114 (124)
13 cd05379 SCP_bacterial SCP_bact 99.8 5.2E-18 1.1E-22 111.2 9.5 93 30-125 2-113 (122)
14 COG2340 Uncharacterized protei 99.6 3.3E-15 7.1E-20 107.8 8.4 94 27-123 79-192 (207)
15 PF07172 GRP: Glycine rich pro 85.5 1.1 2.4E-05 28.5 2.9 21 1-21 1-21 (95)
16 PF11336 DUF3138: Protein of u 58.8 25 0.00054 28.6 4.9 13 52-64 82-94 (514)
17 PF12273 RCR: Chitin synthesis 54.3 27 0.00059 23.0 4.0 22 34-56 20-41 (130)
18 KOG4439 RNA polymerase II tran 53.6 17 0.00036 31.5 3.3 43 27-69 783-846 (901)
19 PF11054 Surface_antigen: Spor 52.3 56 0.0012 24.5 5.5 68 28-100 34-127 (254)
20 COG3026 RseB Negative regulato 48.9 30 0.00066 26.6 3.8 43 1-45 1-43 (320)
21 PRK10598 lipoprotein; Provisio 39.4 57 0.0012 23.3 3.8 20 27-46 30-49 (186)
22 PF15240 Pro-rich: Proline-ric 38.2 24 0.00053 25.0 1.8 15 9-23 4-18 (179)
23 PF15284 PAGK: Phage-encoded v 38.1 33 0.00071 20.0 2.0 13 1-13 1-13 (61)
24 PRK10081 entericidin B membran 33.8 49 0.0011 18.3 2.2 7 1-7 2-8 (48)
25 PRK11289 ampC beta-lactamase/D 33.1 88 0.0019 24.6 4.4 46 1-46 2-49 (384)
26 PF08194 DIM: DIM protein; In 33.0 56 0.0012 16.9 2.2 6 1-6 1-6 (36)
27 TIGR02209 ftsL_broad cell divi 32.4 92 0.002 18.5 3.6 10 52-61 60-69 (85)
28 COG5510 Predicted small secret 32.2 66 0.0014 17.4 2.5 7 1-7 2-8 (44)
29 COG1318 Predicted transcriptio 31.8 41 0.00088 23.9 2.1 18 47-64 40-57 (182)
30 PRK10144 formate-dependent nit 31.4 1.3E+02 0.0028 20.2 4.3 61 27-87 29-95 (126)
31 PF08557 Lipid_DES: Sphingolip 29.6 54 0.0012 17.3 1.8 22 27-49 17-38 (39)
32 PF05984 Cytomega_UL20A: Cytom 29.3 44 0.00095 20.8 1.7 24 1-25 1-24 (100)
33 PF11912 DUF3430: Protein of u 29.3 51 0.0011 23.2 2.3 8 1-8 1-8 (212)
34 PHA03066 Hypothetical protein; 27.3 1.7E+02 0.0037 19.1 4.2 40 1-42 1-41 (110)
35 PF03295 Pox_TAA1: Poxvirus tr 27.0 54 0.0012 19.1 1.7 19 27-45 24-42 (63)
36 PF11777 DUF3316: Protein of u 26.0 76 0.0017 20.4 2.5 14 1-14 1-14 (114)
37 PF07438 DUF1514: Protein of u 23.7 1.7E+02 0.0036 17.3 3.7 10 31-40 28-37 (66)
38 TIGR03656 IsdC heme uptake pro 23.2 73 0.0016 23.4 2.2 24 1-24 1-24 (217)
39 PF12099 DUF3575: Protein of u 22.6 72 0.0016 22.6 2.1 12 1-12 1-12 (189)
40 PF05049 IIGP: Interferon-indu 22.5 64 0.0014 25.6 1.9 32 27-63 270-301 (376)
41 PF03032 Brevenin: Brevenin/es 22.2 57 0.0012 17.8 1.2 12 14-25 11-22 (46)
42 PF09169 BRCA-2_helical: BRCA2 21.8 76 0.0016 22.9 2.0 18 96-113 144-161 (195)
43 PF11119 DUF2633: Protein of u 21.4 1.5E+02 0.0033 17.1 2.8 14 33-46 33-46 (59)
44 TIGR03044 PS_II_psb27 photosys 21.0 2.8E+02 0.0061 18.8 5.2 20 27-46 36-55 (135)
45 PF04863 EGF_alliinase: Alliin 20.1 1.2E+02 0.0026 17.3 2.2 16 49-64 1-16 (56)
No 1
>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.97 E-value=4.4e-30 Score=173.46 Aligned_cols=94 Identities=40% Similarity=0.853 Sum_probs=87.1
Q ss_pred HHHHHHHHHhhhhcCCCCCccCCHHHHHHHHHHHHhhcccCccccCCCCccceeeeecC-CCcHHHHHHHHh--------
Q 042401 30 QRYVHLHNEAPRNVGIGIGMTWDKTLEDHSHSYALKLKVDCIIEHSIRHYGKNLGWADY-DFTVDHIVKMWM-------- 100 (126)
Q Consensus 30 ~~il~~hN~~R~~~~~~~~L~Wd~~La~~A~~~A~~~a~~c~~~~~~~~~Geni~~~~~-~~~~~~~v~~W~-------- 100 (126)
++||+.||++|+.++++ +|+||++|++.||.||++|+..|...|+.+.+|||++++.. ...+.++|+.|+
T Consensus 2 ~~il~~hN~~R~~~~~~-~L~Wd~~La~~A~~~a~~~~~~c~~~~~~~~~GeNi~~~~~~~~~~~~~v~~W~~e~~~y~~ 80 (136)
T cd05381 2 QDFLDAHNAARAAVGVP-PLKWDDTLAAYAQRYANQRRGDCALVHSNGPYGENLFWGSGGNWSAADAVASWVSEKKYYDY 80 (136)
T ss_pred hHHHHHHHHHHHhcCCC-cceECHHHHHHHHHHHHHhcCCCCcccCCCCCCceEEEecCCCCCHHHHHHHHHhccccCCC
Confidence 67999999999999999 99999999999999999888889999988789999997765 357899999998
Q ss_pred ----------hhHHHHHHhhhcceeeEEEEEcCC
Q 042401 101 ----------CGHYTQVVWRKSVGLGCAKERCNN 124 (126)
Q Consensus 101 ----------~~h~tqmvw~~t~~vGCa~~~c~~ 124 (126)
++|||||||+++++||||++.|.+
T Consensus 81 ~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~ 114 (136)
T cd05381 81 DSNTCAAGKMCGHYTQVVWRNTTRVGCARVTCDN 114 (136)
T ss_pred CCCCcCCCccchHHHHHHHHhcCEeceEEEEeCC
Confidence 689999999999999999999976
No 2
>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune.
Probab=99.96 E-value=1.5e-29 Score=169.44 Aligned_cols=94 Identities=29% Similarity=0.554 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHhhhhcCCCCCccCCHHHHHHHHHHHHhhcccCccccCCCCccceeeeecCCCcHHHHHHHHh-------
Q 042401 28 TQQRYVHLHNEAPRNVGIGIGMTWDKTLEDHSHSYALKLKVDCIIEHSIRHYGKNLGWADYDFTVDHIVKMWM------- 100 (126)
Q Consensus 28 ~~~~il~~hN~~R~~~~~~~~L~Wd~~La~~A~~~A~~~a~~c~~~~~~~~~Geni~~~~~~~~~~~~v~~W~------- 100 (126)
.++.||+.||++|+.++++ ||+||++|+..||.||++|+..|.+.|+++.+|||++.+.. +++++|+.|+
T Consensus 2 ~~~~iL~~hN~~R~~~g~~-~L~w~~~La~~A~~~a~~c~~~~~~~~~~~~~geNi~~~~~--~~~~~v~~W~~e~~~y~ 78 (129)
T cd05384 2 FASSILDAHNSKRALHGVQ-PLTWNNTLAEYAQDYANSYDCSGNLAHSGGPYGENLAAGYP--SGTSAVDAWYDEIEDYD 78 (129)
T ss_pred HHHHHHHHHHHHHHHcCCC-cCccCHHHHHHHHHHHHHhccCCceecCCCCCCcEEEEecC--CHHHHHHHHHhhhhhCC
Confidence 6889999999999999999 99999999999999999777777789988889999998765 7899999998
Q ss_pred ---------hhHHHHHHhhhcceeeEEEEEcCC
Q 042401 101 ---------CGHYTQVVWRKSVGLGCAKERCNN 124 (126)
Q Consensus 101 ---------~~h~tqmvw~~t~~vGCa~~~c~~ 124 (126)
++|||||||+++++||||++.|++
T Consensus 79 ~~~~~~~~~~~h~tqmvw~~t~~vGCa~~~c~~ 111 (129)
T cd05384 79 YSNPGFSEATGHFTQLVWKSTTQVGCAYKDCGG 111 (129)
T ss_pred CCCCCCCCcccchhhhhhhccceeeeEEEEeCC
Confidence 789999999999999999999976
No 3
>cd05382 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms.
Probab=99.96 E-value=2.6e-29 Score=168.48 Aligned_cols=97 Identities=33% Similarity=0.532 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCccCCHHHHHHHHHHHHhhcccCccccCCC-CccceeeeecC---CCcHHHHHHHHh--
Q 042401 27 ATQQRYVHLHNEAPRNVGIGIGMTWDKTLEDHSHSYALKLKVDCIIEHSIR-HYGKNLGWADY---DFTVDHIVKMWM-- 100 (126)
Q Consensus 27 ~~~~~il~~hN~~R~~~~~~~~L~Wd~~La~~A~~~A~~~a~~c~~~~~~~-~~Geni~~~~~---~~~~~~~v~~W~-- 100 (126)
+++++||+.||++|+.++++ ||+||++|++.||.||++|+..+.+.|+++ .+|||++++.. +..++++|+.|+
T Consensus 1 ~~~~~iL~~hN~~R~~~g~~-~L~wd~~La~~A~~~a~~c~~~~~~~h~~~~~~GeN~~~~~~~~~~~~~~~~v~~W~~e 79 (132)
T cd05382 1 DFQKECLDAHNEYRALHGAP-PLKLDKELAKEAQKWAEKLASSGKLQHSSPSGYGENLAYASGSGPDLTGEEAVDSWYNE 79 (132)
T ss_pred CHHHHHHHHHHHHHHHcCCC-cCeeCHHHHHHHHHHHHHhhhcCceeCCCCCCCCceeEEecCCCCCCCHHHHHHHHHhc
Confidence 36899999999999999999 999999999999999998887777888765 69999998763 458899999998
Q ss_pred --------------hhHHHHHHhhhcceeeEEEEEcCC
Q 042401 101 --------------CGHYTQVVWRKSVGLGCAKERCNN 124 (126)
Q Consensus 101 --------------~~h~tqmvw~~t~~vGCa~~~c~~ 124 (126)
++||+||||+++++||||++.|++
T Consensus 80 ~~~y~~~~~~~~~~~gh~tqmvw~~t~~vGCa~~~~~~ 117 (132)
T cd05382 80 IKKYDFNKPGFSSKTGHFTQVVWKSSTELGVGVAKSKK 117 (132)
T ss_pred cccCCCCCCCCCCCCCCeEEeEecCCCceeeEEEEcCC
Confidence 689999999999999999999975
No 4
>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as
Probab=99.96 E-value=1.7e-28 Score=162.78 Aligned_cols=91 Identities=41% Similarity=0.764 Sum_probs=83.2
Q ss_pred HHHHHHHHHhhhhc-CCCCCccCCHHHHHHHHHHHHhhcccCccccCCC----CccceeeeecCCCcHHHHHHHHh----
Q 042401 30 QRYVHLHNEAPRNV-GIGIGMTWDKTLEDHSHSYALKLKVDCIIEHSIR----HYGKNLGWADYDFTVDHIVKMWM---- 100 (126)
Q Consensus 30 ~~il~~hN~~R~~~-~~~~~L~Wd~~La~~A~~~A~~~a~~c~~~~~~~----~~Geni~~~~~~~~~~~~v~~W~---- 100 (126)
++||+.||.+|+.+ +++ ||+||++|+..||.+|+ +|.+.|++. .+|||++.+..+.+++++++.|+
T Consensus 2 ~~il~~hN~~R~~~a~~~-~L~wd~~La~~A~~~a~----~c~~~h~~~~~~~~~geNi~~~~~~~~~~~~v~~W~~e~~ 76 (122)
T cd00168 2 QEVVRLHNSYRAKVNGML-PMSWDAELAKTAQNYAN----RCIFKHSGEDGRGFVGENLAAGSYDMTGPAAVQAWYNEIK 76 (122)
T ss_pred cHHHHHHHHHHHhcCCCC-CCccCHHHHHHHHHHHh----hccccCCCcccCCCCCceeEEecCCCCHHHHHHHHHHHHH
Confidence 57999999999999 999 99999999999999999 899988763 68999998775568999999999
Q ss_pred ------------hhHHHHHHhhhcceeeEEEEEcCCC
Q 042401 101 ------------CGHYTQVVWRKSVGLGCAKERCNNN 125 (126)
Q Consensus 101 ------------~~h~tqmvw~~t~~vGCa~~~c~~g 125 (126)
++||+||||+++++||||++.|+++
T Consensus 77 ~y~~~~~~~~~~~~h~~qmvw~~s~~vGca~~~~~~~ 113 (122)
T cd00168 77 NYNFGQPGFSSGTGHYTQVVWKNTTKIGCGVAFCGSN 113 (122)
T ss_pred hCCCCCCCCCCCccchhhhhcccCCeeeeEEEEcCCC
Confidence 6799999999999999999999853
No 5
>cd05385 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.95 E-value=2.1e-28 Score=166.99 Aligned_cols=94 Identities=36% Similarity=0.680 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhhhhcC-----CCCCccCCHHHHHHHHHHHHhhcccCccccCC------------CCccceeeeecC-
Q 042401 27 ATQQRYVHLHNEAPRNVG-----IGIGMTWDKTLEDHSHSYALKLKVDCIIEHSI------------RHYGKNLGWADY- 88 (126)
Q Consensus 27 ~~~~~il~~hN~~R~~~~-----~~~~L~Wd~~La~~A~~~A~~~a~~c~~~~~~------------~~~Geni~~~~~- 88 (126)
+++++||+.||++|+.+. ++ +|+||++||+.||.||+ +|.+.|++ +.+||||+.+..
T Consensus 1 ~f~~~~L~~HN~~R~~~~p~a~~m~-~l~Wd~~La~~Aq~~a~----~C~~~~~~~~~~~~~~~~~~~~~GeNi~~~~~~ 75 (144)
T cd05385 1 EFIDECVRIHNELRSKVSPPAANMR-YMTWDAALAKTARAWAK----KCKFKHNIYLGKRYKCHPKFTSVGENIWLGSIY 75 (144)
T ss_pred CHHHHHHHHHHHHHhhCCCCcccCc-ccccCHHHHHHHHHHHh----cCCCCCCchhhcccccccccCcccceeeecccC
Confidence 478999999999999995 45 89999999999999999 89888753 258999987654
Q ss_pred CCcHHHHHHHHh----------------hhHHHHHHhhhcceeeEEEEEcCCC
Q 042401 89 DFTVDHIVKMWM----------------CGHYTQVVWRKSVGLGCAKERCNNN 125 (126)
Q Consensus 89 ~~~~~~~v~~W~----------------~~h~tqmvw~~t~~vGCa~~~c~~g 125 (126)
.+.+.++|+.|| ++|||||||++|++||||+++|+++
T Consensus 76 ~~~~~~av~~W~~e~~~y~~~~~~~~~~~ghftqmvw~~t~~vGCa~~~c~~~ 128 (144)
T cd05385 76 IFSPKNAVTSWYNEGKFYDFDTNSCSRVCGHYTQVVWATSYKVGCAVAFCPNL 128 (144)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCCCCcccCHHHHHHhhccccceEEEECCCC
Confidence 357899999998 6899999999999999999999764
No 6
>cd05383 SCP_CRISP SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ t
Probab=99.95 E-value=9.3e-28 Score=162.72 Aligned_cols=94 Identities=34% Similarity=0.662 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhhhhcCCC----CCccCCHHHHHHHHHHHHhhcccCccccCCC--------CccceeeeecCCCcHHHH
Q 042401 28 TQQRYVHLHNEAPRNVGIG----IGMTWDKTLEDHSHSYALKLKVDCIIEHSIR--------HYGKNLGWADYDFTVDHI 95 (126)
Q Consensus 28 ~~~~il~~hN~~R~~~~~~----~~L~Wd~~La~~A~~~A~~~a~~c~~~~~~~--------~~Geni~~~~~~~~~~~~ 95 (126)
.++.||+.||.+|+.+.+| .+|+||++||..||.||+ +|.+.|++. .+|||++........+++
T Consensus 2 ~~~~il~~HN~~R~~~~p~a~~M~~l~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~~~~~GeNl~~~~~~~~~~~a 77 (138)
T cd05383 2 VQKEIVDLHNELRRSVNPTASNMLKMEWNEEAAQNAKKWAN----TCNLTHSPPNGRTIGGITCGENIFMSSYPRSWSDV 77 (138)
T ss_pred HHHHHHHHHHHHhccCCCCcccCcccEeCHHHHHHHHHHHh----cCCCcCCchhhcccCCCCcceeeeccCCCCCHHHH
Confidence 5789999999999998655 369999999999999999 999888752 479999977655578899
Q ss_pred HHHHh------------------hhHHHHHHhhhcceeeEEEEEcCCC
Q 042401 96 VKMWM------------------CGHYTQVVWRKSVGLGCAKERCNNN 125 (126)
Q Consensus 96 v~~W~------------------~~h~tqmvw~~t~~vGCa~~~c~~g 125 (126)
|+.|+ ++|||||||++|++||||++.|+++
T Consensus 78 v~~W~~e~~~y~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~ 125 (138)
T cd05383 78 IQAWYDEYKDFKYGVGATPPGAVVGHYTQIVWYKSYLVGCAVAYCPNS 125 (138)
T ss_pred HHHHHHHHHhCCCCCCCCCCCCchhhHHHHHHHhccccceEEEECCCC
Confidence 99998 8899999999999999999999864
No 7
>cd05559 SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.95 E-value=1.2e-27 Score=161.91 Aligned_cols=92 Identities=36% Similarity=0.691 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhhhhcCCC----CCccCCHHHHHHHHHHHHhhcccCccccCCC----CccceeeeecC-CCcHHHHHHHH
Q 042401 29 QQRYVHLHNEAPRNVGIG----IGMTWDKTLEDHSHSYALKLKVDCIIEHSIR----HYGKNLGWADY-DFTVDHIVKMW 99 (126)
Q Consensus 29 ~~~il~~hN~~R~~~~~~----~~L~Wd~~La~~A~~~A~~~a~~c~~~~~~~----~~Geni~~~~~-~~~~~~~v~~W 99 (126)
|+.||+.||++|+.+.+| .+|+||++||..||.||+ +|.+.|++. .+|||++...+ .+.+.++|+.|
T Consensus 1 r~~il~~HN~~R~~~~p~a~~m~~L~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~v~~W 76 (136)
T cd05559 1 RLNLVDLHNQYRSQVSPPAANMLKMTWDEELAALAEAYAR----KCIWDHNPDRGHLRVGENLFISTGPPFDATKAVEDW 76 (136)
T ss_pred CcHHHHHHHHHHhhCCCccccCcccccCHHHHHHHHHHHH----hccccCCCcccCCCceeeeeecCCCCCCHHHHHHHH
Confidence 468999999999999755 369999999999999999 999888652 69999987664 45789999999
Q ss_pred h------------------hhHHHHHHhhhcceeeEEEEEcCC
Q 042401 100 M------------------CGHYTQVVWRKSVGLGCAKERCNN 124 (126)
Q Consensus 100 ~------------------~~h~tqmvw~~t~~vGCa~~~c~~ 124 (126)
+ ++||+||||+++++||||++.|++
T Consensus 77 ~~e~~~y~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~ 119 (136)
T cd05559 77 NNEKLDYNYNTNTCAPNKMCGHYTQVVWANTFKIGCGSYFCET 119 (136)
T ss_pred HHHHHhcCCCCCCCCCCCcccchHHHHHhccCccceEEEECCC
Confidence 8 789999999999999999999975
No 8
>smart00198 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function.
Probab=99.95 E-value=2.8e-27 Score=160.67 Aligned_cols=93 Identities=34% Similarity=0.680 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhhhhcC-----------CCCCccCCHHHHHHHHHHHHhhcccCccccCCC-CccceeeeecC-----CC
Q 042401 28 TQQRYVHLHNEAPRNVG-----------IGIGMTWDKTLEDHSHSYALKLKVDCIIEHSIR-HYGKNLGWADY-----DF 90 (126)
Q Consensus 28 ~~~~il~~hN~~R~~~~-----------~~~~L~Wd~~La~~A~~~A~~~a~~c~~~~~~~-~~Geni~~~~~-----~~ 90 (126)
.++.||+.||.+|+.++ ++ +|+||++||+.|+.+|+ .|...|++. .+|||+++..+ ..
T Consensus 2 ~~~~iL~~HN~~R~~~a~G~~~~p~a~~m~-~l~Wd~~La~~A~~~a~----~C~~~~~~~~~~GeNi~~~~~~~~~~~~ 76 (144)
T smart00198 2 QQQEILDAHNKLRSQVAKGLLANPAASNML-KLTWDCELASSAQNWAN----QCPFGHSTPRGYGENLAWWSSSTDLPIT 76 (144)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccccc-cccCCHHHHHHHHHHHH----hCCCcCCCcCCcCcceEEecccCcccch
Confidence 58899999999999998 88 99999999999999999 899888754 79999997653 24
Q ss_pred cHHHHHHHHh-------------------hhHHHHHHhhhcceeeEEEEEcCCC
Q 042401 91 TVDHIVKMWM-------------------CGHYTQVVWRKSVGLGCAKERCNNN 125 (126)
Q Consensus 91 ~~~~~v~~W~-------------------~~h~tqmvw~~t~~vGCa~~~c~~g 125 (126)
.+.++|+.|+ ++|||||||+++++||||++.|+++
T Consensus 77 ~~~~av~~W~~e~~~y~~~~~~~~~~~~~~~hftqmvw~~s~~vGCa~~~c~~~ 130 (144)
T smart00198 77 YASAAVQLWYDEFQDYGYSSNTCKDTNGKIGHYTQVVWAKTYKVGCGVSNCPDG 130 (144)
T ss_pred hHHHHHHHHHHHHHHcCCCCCccccCccchhHHHHHHHHhcCCcceEEEECCCC
Confidence 7788999999 5899999999999999999999875
No 9
>cd05380 SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.93 E-value=3.2e-26 Score=154.69 Aligned_cols=91 Identities=33% Similarity=0.659 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhhhhc------------CCCCCccCCHHHHHHHHHHHHhhcccCccccCCC----CccceeeeecCC---
Q 042401 29 QQRYVHLHNEAPRNV------------GIGIGMTWDKTLEDHSHSYALKLKVDCIIEHSIR----HYGKNLGWADYD--- 89 (126)
Q Consensus 29 ~~~il~~hN~~R~~~------------~~~~~L~Wd~~La~~A~~~A~~~a~~c~~~~~~~----~~Geni~~~~~~--- 89 (126)
++.||+.||.+|+.+ .++ +|+||++||..|+.||+ +|...|++. .+|||++.....
T Consensus 1 ~~~il~~HN~~R~~~a~g~~~~~p~a~~m~-~l~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~GeNl~~~~~~~~~ 75 (144)
T cd05380 1 RQAILDAHNELRSKVAKGTYSLLPPASNMP-KLKWDDELAALAQNWAK----TCVFEHSPCRNTGGVGQNLAAGSSTGST 75 (144)
T ss_pred CcHHHHHHHHHHHHhhcCCCCCCCchhcCC-cceeCHHHHHHHHHHHh----cCCCcCCcccCCCCCCcEEEEeccCCCC
Confidence 367999999999999 667 99999999999999999 998888754 689999987642
Q ss_pred --CcHHHHHHHHh-------------------hhHHHHHHhhhcceeeEEEEEcCC
Q 042401 90 --FTVDHIVKMWM-------------------CGHYTQVVWRKSVGLGCAKERCNN 124 (126)
Q Consensus 90 --~~~~~~v~~W~-------------------~~h~tqmvw~~t~~vGCa~~~c~~ 124 (126)
..+.++|+.|+ ++||+||||+++++||||++.|.+
T Consensus 76 ~~~~~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~~~~ 131 (144)
T cd05380 76 VEELAEDAVNAWYNELKDYGFGSNPTNNFNSGIGHFTQMVWAKTTKVGCAVARCGK 131 (144)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCcccccccchhHHHHHHHHhcCccceEEEEeec
Confidence 26889999999 399999999999999999999975
No 10
>KOG3017 consensus Defense-related protein containing SCP domain [Function unknown]
Probab=99.90 E-value=7.8e-25 Score=158.85 Aligned_cols=94 Identities=34% Similarity=0.659 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhhhhcC-----CCCCccCCHHHHHHHHHHHHhhcccCccccC------CCCccceeeeecCC------
Q 042401 27 ATQQRYVHLHNEAPRNVG-----IGIGMTWDKTLEDHSHSYALKLKVDCIIEHS------IRHYGKNLGWADYD------ 89 (126)
Q Consensus 27 ~~~~~il~~hN~~R~~~~-----~~~~L~Wd~~La~~A~~~A~~~a~~c~~~~~------~~~~Geni~~~~~~------ 89 (126)
++++++++.||.+|..++ ++ +|+||++||..||.||+ +|.+.|+ .+.+|||++++...
T Consensus 40 ~~~~~~~~~hn~~r~~~~~~as~m~-~m~Wd~~La~~Aq~~a~----~c~~~~~~~~~~~~~~~GeNl~~~~~~~~~~~~ 114 (225)
T KOG3017|consen 40 NLRSEILNGHNVARGAVGPPASNMM-KLKWDDELAALAQNWAN----TCPFGHDKCVHTSFGPYGENLAWGWSSNPPLSL 114 (225)
T ss_pred HHHHHHHhhhHHhcCccCCchHhCc-cccCCHHHHHHHHHHHh----hCCcccCccccccCCCCcccceeeccCCCCccc
Confidence 688999999999999999 78 99999999999999999 8888775 46789999976652
Q ss_pred -CcHHHHHHHHh---------------------hhHHHHHHhhhcceeeEEEEEcCCC
Q 042401 90 -FTVDHIVKMWM---------------------CGHYTQVVWRKSVGLGCAKERCNNN 125 (126)
Q Consensus 90 -~~~~~~v~~W~---------------------~~h~tqmvw~~t~~vGCa~~~c~~g 125 (126)
.....+++.|+ ++|||||||++|++||||+++|.++
T Consensus 115 ~~~~~~a~~~w~~e~~~~~~~~~~~~~~~~~~~~gHyTQ~vw~~s~~vGCgv~~c~~~ 172 (225)
T KOG3017|consen 115 DTSGALAVEAWESEFQEYDWSSNTCSSADFGEGIGHYTQMVWAKSTKVGCGVVRCGNG 172 (225)
T ss_pred cccHHHHHHHHHHHHHHccCcccccCcccCCCcceEEEEEEEeCCceeceeeccCCCC
Confidence 46677888887 8999999999999999999999876
No 11
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.
Probab=99.89 E-value=9e-23 Score=136.75 Aligned_cols=96 Identities=19% Similarity=0.310 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCccCCHHHHHHHHHHHHhhcccCccccCCC-----------------CccceeeeecCC
Q 042401 27 ATQQRYVHLHNEAPRNVGIGIGMTWDKTLEDHSHSYALKLKVDCIIEHSIR-----------------HYGKNLGWADYD 89 (126)
Q Consensus 27 ~~~~~il~~hN~~R~~~~~~~~L~Wd~~La~~A~~~A~~~a~~c~~~~~~~-----------------~~Geni~~~~~~ 89 (126)
++++++++.||++|.++|++ ||+||++|++.|+.||++|+..+.+.|..+ .+||||+.+..
T Consensus 3 ~~e~~~l~~iN~~R~~~Gl~-pL~~~~~L~~~A~~hA~~ma~~~~~~H~~~~~~~~~~r~~~~g~~~~~~gENi~~g~~- 80 (127)
T TIGR02909 3 AEEKRVVELVNAERAKNGLK-PLKADPELSKVARLKSEDMRDKNYFSHTSPTYGSPFDMMKKFGISYRMAGENIAYGNS- 80 (127)
T ss_pred HHHHHHHHHHHHHHHHcCCC-CCccCHHHHHHHHHHHHHHHhCCcccccCCCCCCHHHHHHHcCCCcccceeeeeccCC-
Confidence 46889999999999999999 999999999999999999999999998642 34999997765
Q ss_pred CcHHHHHHHHh--hhHHHHHHhhhcceeeEEEEEcCCC
Q 042401 90 FTVDHIVKMWM--CGHYTQVVWRKSVGLGCAKERCNNN 125 (126)
Q Consensus 90 ~~~~~~v~~W~--~~h~tqmvw~~t~~vGCa~~~c~~g 125 (126)
+++++++.|+ ++|+++|+|++++++|||++.+++|
T Consensus 81 -~~~~~v~~W~~S~gH~~nil~~~~~~~Gvg~~~~~~g 117 (127)
T TIGR02909 81 -TVEAVHNAWMNSPGHRANILNPNYTEIGVGYVEGGSG 117 (127)
T ss_pred -CHHHHHHHHHcCHhHHHHHcCCCcCeEeEEEEeCCCC
Confidence 8899999999 9999999999999999999998776
No 12
>PF00188 CAP: Cysteine-rich secretory protein family; InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP superfamily results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences []. The Ca++-chelating function [] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Q91055 from SWISSPROT blocks the Ca++ transporting ryanodine receptors. This entry represents the CAP domain common to all members of the CAP superfamily. The CAP domain forms a unique 3 layer alpha-beta-alpha fold with some, though not all, of the structural elements found in proteases [].; PDB: 3U3N_C 3U3U_C 3U3L_C 1U53_A 1RC9_A 1SMB_A 3NT8_B 1QNX_A 1WVR_A 3Q2U_A ....
Probab=99.77 E-value=2.1e-18 Score=110.84 Aligned_cols=88 Identities=27% Similarity=0.518 Sum_probs=62.7
Q ss_pred HHHHHHhh-hhcCCCCCccCCHHHHHHHHHHHHhhcccCccccC-CCCccceeeeecCCCcHHH----HHHHHh------
Q 042401 33 VHLHNEAP-RNVGIGIGMTWDKTLEDHSHSYALKLKVDCIIEHS-IRHYGKNLGWADYDFTVDH----IVKMWM------ 100 (126)
Q Consensus 33 l~~hN~~R-~~~~~~~~L~Wd~~La~~A~~~A~~~a~~c~~~~~-~~~~Geni~~~~~~~~~~~----~v~~W~------ 100 (126)
|+.||++| ...+++ ||+||++|++.|+.+|+ .|...+. ....|+|+........... .++.|+
T Consensus 1 L~~~N~~R~~~~~~~-~L~~d~~L~~~A~~~a~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (124)
T PF00188_consen 1 LDLHNEYRSAANGLP-PLKWDPELAKAAQAHAK----YCANSNSLSHDSGENGSQSSRFGSYSDAQVTAVENWYSESKNY 75 (124)
T ss_dssp HHHHHHHHHBSSTBB---EE-HHHHHHHHHHHT----TTCSSEETTEESEEEEEEESSTTSHHHHHHHHHHHHHGGGGGE
T ss_pred CHHHHHHHHHhCCCC-CCeeCHHHHHHHHHhhH----HhhhhcccccccCCCCccccccccccchhhHHHHHHHhccccc
Confidence 68999999 888999 99999999999999999 5554322 2355777765543111111 177776
Q ss_pred --------------hhHHHHHHhhhcceeeEEEEEcCCC
Q 042401 101 --------------CGHYTQVVWRKSVGLGCAKERCNNN 125 (126)
Q Consensus 101 --------------~~h~tqmvw~~t~~vGCa~~~c~~g 125 (126)
++||+||+|.++++||||++.|+++
T Consensus 76 ~~~~~~~~~~~~~~~~h~~~ll~~~~~~iGca~~~~~~~ 114 (124)
T PF00188_consen 76 NFQNQSIFNSWMNSPGHFTNLLWPNTTRIGCAVANCPNG 114 (124)
T ss_dssp ETTCSTEESSTTSTCHHHHHHT-TT--EEEEEEEEETTS
T ss_pred ccccchhhhccCCchhhhhhhhcCCCCEEEEEEEEeCCC
Confidence 7999999999999999999999876
No 13
>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.
Probab=99.76 E-value=5.2e-18 Score=111.22 Aligned_cols=93 Identities=20% Similarity=0.333 Sum_probs=82.3
Q ss_pred HHHHHHHHHhhhhcCCCCCccCCHHHHHHHHHHHHhhcccCccccCCC-----------------CccceeeeecCCCcH
Q 042401 30 QRYVHLHNEAPRNVGIGIGMTWDKTLEDHSHSYALKLKVDCIIEHSIR-----------------HYGKNLGWADYDFTV 92 (126)
Q Consensus 30 ~~il~~hN~~R~~~~~~~~L~Wd~~La~~A~~~A~~~a~~c~~~~~~~-----------------~~Geni~~~~~~~~~ 92 (126)
+.+++.+|.+|..++++ ||+||.+|+..|+.+|++|+....+.|.+. .+|||++.+.. ++
T Consensus 2 ~~~~~~iN~~R~~~gl~-pl~~~~~l~~~A~~~a~~~~~~~~~~h~~~~~~~~~~~~~~~g~~~~~~~eni~~~~~--~~ 78 (122)
T cd05379 2 QEALELINAYRAQNGLP-PLTWDPALAAAAQAHARDMAANGYFSHTGPDGSSPFDRARAAGYPYSSAGENIAYGYS--TA 78 (122)
T ss_pred hHHHHHHHHHHHHcCCC-CCccChHHHHHHHHHHHHHHhcCccCCcCCCCCCHHHHHHHcCCCcCccchhhcccCC--CH
Confidence 57899999999999999 999999999999999999998777777541 13999987765 78
Q ss_pred HHHHHHHh--hhHHHHHHhhhcceeeEEEEEcCCC
Q 042401 93 DHIVKMWM--CGHYTQVVWRKSVGLGCAKERCNNN 125 (126)
Q Consensus 93 ~~~v~~W~--~~h~tqmvw~~t~~vGCa~~~c~~g 125 (126)
.++++.|+ .+|+.+|++++.+++|||++.+++|
T Consensus 79 ~~~~~~w~~~~~H~~~ll~~~~~~~Gvg~~~~~~~ 113 (122)
T cd05379 79 EAAVDGWMNSPGHRANILNPDYTEVGVGVAYGGDG 113 (122)
T ss_pred HHHHHHHhCCHhHHHHHcCCCcceeeEEEEeCCCC
Confidence 99999999 7999999999999999999988653
No 14
>COG2340 Uncharacterized protein with SCP/PR1 domains [Function unknown]
Probab=99.61 E-value=3.3e-15 Score=107.80 Aligned_cols=94 Identities=16% Similarity=0.288 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCccCCHHHHHHHHHHHHhhcccCccccCCC-----------------CccceeeeecCC
Q 042401 27 ATQQRYVHLHNEAPRNVGIGIGMTWDKTLEDHSHSYALKLKVDCIIEHSIR-----------------HYGKNLGWADYD 89 (126)
Q Consensus 27 ~~~~~il~~hN~~R~~~~~~~~L~Wd~~La~~A~~~A~~~a~~c~~~~~~~-----------------~~Geni~~~~~~ 89 (126)
++.+.+++.+|++|..++++ ||+||.+|+..|+.++++|+....+.|..+ .+||||+.++.
T Consensus 79 ~~~~~~~~~~N~~R~~~~l~-~L~~n~~L~~~A~~~a~~m~~~g~~sH~~~~g~~~~~r~~~~g~~~~~agENIa~g~~- 156 (207)
T COG2340 79 QFEKAVVAETNQERAKHGLP-PLAWNATLAKAARNHARDMAKNGYFSHTSPTGETPADRLKKYGISGATAGENIAYGSN- 156 (207)
T ss_pred hhHHHHHHHHHHHHhhcCCC-CcccCHHHHHHHHHHHHHHHHcCCccccCCCCCCHHHHHHhCCcccccccceeecCCC-
Confidence 67889999999999999999 999999999999999999999999999642 36999998865
Q ss_pred CcH-HHHHHHHh--hhHHHHHHhhhcceeeEEEEEcC
Q 042401 90 FTV-DHIVKMWM--CGHYTQVVWRKSVGLGCAKERCN 123 (126)
Q Consensus 90 ~~~-~~~v~~W~--~~h~tqmvw~~t~~vGCa~~~c~ 123 (126)
+. +.+++.|+ .||.++|+-.+.+.+|.|+.+-.
T Consensus 157 -~~~~~~v~~Wl~S~gH~~nll~~~~~~~Gv~~~~~~ 192 (207)
T COG2340 157 -DPPEAAVDGWLNSPGHRKNLLNPAYTEIGVGVAYDA 192 (207)
T ss_pred -CchHHHHHHhcCChhhhhhccCcchhheeEEEEecC
Confidence 44 89999999 99999999999999999998743
No 15
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=85.48 E-value=1.1 Score=28.53 Aligned_cols=21 Identities=24% Similarity=0.075 Sum_probs=10.8
Q ss_pred CcchHHHHHHHHHHHHHHhhc
Q 042401 1 MSSINSLAIFYLVVLAARIHL 21 (126)
Q Consensus 1 M~~~~~l~i~~l~~~~~~~~~ 21 (126)
|-|...|+|.++++++.++++
T Consensus 1 MaSK~~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISS 21 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHh
Confidence 666655545444444444444
No 16
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=58.76 E-value=25 Score=28.60 Aligned_cols=13 Identities=8% Similarity=0.071 Sum_probs=11.3
Q ss_pred CHHHHHHHHHHHH
Q 042401 52 DKTLEDHSHSYAL 64 (126)
Q Consensus 52 d~~La~~A~~~A~ 64 (126)
++++.+.+|+.|+
T Consensus 82 ~d~~~~~~qqiAn 94 (514)
T PF11336_consen 82 NDDATEMRQQIAN 94 (514)
T ss_pred hHHHHHHHHHHHh
Confidence 7889888998887
No 17
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=54.32 E-value=27 Score=23.05 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=14.8
Q ss_pred HHHHHhhhhcCCCCCccCCHHHH
Q 042401 34 HLHNEAPRNVGIGIGMTWDKTLE 56 (126)
Q Consensus 34 ~~hN~~R~~~~~~~~L~Wd~~La 56 (126)
-.||+-|++-|.. ++.-..-++
T Consensus 20 ~~~~rRR~r~G~~-P~~gt~w~~ 41 (130)
T PF12273_consen 20 YCHNRRRRRRGLQ-PIYGTRWMA 41 (130)
T ss_pred HHHHHHHhhcCCC-CcCCceecC
Confidence 3478888888877 766554444
No 18
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=53.57 E-value=17 Score=31.52 Aligned_cols=43 Identities=16% Similarity=0.392 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhhhcC----------CC-----------CCccCCHHHHHHHHHHHHhhccc
Q 042401 27 ATQQRYVHLHNEAPRNVG----------IG-----------IGMTWDKTLEDHSHSYALKLKVD 69 (126)
Q Consensus 27 ~~~~~il~~hN~~R~~~~----------~~-----------~~L~Wd~~La~~A~~~A~~~a~~ 69 (126)
.+++.+++..|.-+.... ++ ..|.||..|+++|+...-+|..+
T Consensus 783 K~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQk 846 (901)
T KOG4439|consen 783 KDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQK 846 (901)
T ss_pred hHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhccc
Confidence 789999999999887432 11 57899999999999999877643
No 19
>PF11054 Surface_antigen: Sporozoite TA4 surface antigen; InterPro: IPR021288 This family of proteins is a Eukaryotic family of surface antigens. One of the better characterised members of the family is the sporulated TA4 antigen. The TA4 gene encodes a single polypeptide of 25 kDa which contains a 17 and a 8kDa polypeptide [].
Probab=52.26 E-value=56 Score=24.47 Aligned_cols=68 Identities=12% Similarity=0.137 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhhhhcCCC-----------CCccCCHHHHHHHHHHHHhhcccCccccCCC--C------cc----ceee
Q 042401 28 TQQRYVHLHNEAPRNVGIG-----------IGMTWDKTLEDHSHSYALKLKVDCIIEHSIR--H------YG----KNLG 84 (126)
Q Consensus 28 ~~~~il~~hN~~R~~~~~~-----------~~L~Wd~~La~~A~~~A~~~a~~c~~~~~~~--~------~G----eni~ 84 (126)
..-++|+.+|..|...|++ +|=-=+++| .....|-+ -|..-..++ . .. -..+
T Consensus 34 ~~~~CL~E~NaaReAAGL~~F~~A~~~~~~Lp~~~~~e~-~~~t~W~~----iC~~l~pt~~~~~~~~~~~~pf~~GTyA 108 (254)
T PF11054_consen 34 TSVECLSEMNAAREAAGLANFTEATSDDQKLPEPGSEEL-TDDTLWKK----ICEHLIPTQAEPAAEASKLNPFKDGTYA 108 (254)
T ss_pred cchhHHHHHHHHHHhcCchhhHhhcCCcccCCCCCchhc-cchhhHHH----HHHHhcCCCCcchhhccccCcCCCCceE
Confidence 4678999999999999976 222224444 44556776 665443211 0 01 1223
Q ss_pred eec---CCCcHHHHHHHHh
Q 042401 85 WAD---YDFTVDHIVKMWM 100 (126)
Q Consensus 85 ~~~---~~~~~~~~v~~W~ 100 (126)
... ...+.+++|+.|-
T Consensus 109 f~~lt~~~~dCk~aVdYWK 127 (254)
T PF11054_consen 109 FKSLTDEKPDCKEAVDYWK 127 (254)
T ss_pred eeeccCCCCChHHHHHHHH
Confidence 222 1358999999996
No 20
>COG3026 RseB Negative regulator of sigma E activity [Signal transduction mechanisms]
Probab=48.93 E-value=30 Score=26.61 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=25.5
Q ss_pred CcchHHHHHHHHHHHHHHhhccccChHHHHHHHHHHHHhhhhcCC
Q 042401 1 MSSINSLAIFYLVVLAARIHLSSANNATQQRYVHLHNEAPRNVGI 45 (126)
Q Consensus 1 M~~~~~l~i~~l~~~~~~~~~~~a~~~~~~~il~~hN~~R~~~~~ 45 (126)
||. +.+.+++++..+.+++.+.++ +....+|.+.|+.+.+...
T Consensus 1 mk~-l~~s~~ll~~sl~~s~~a~ae-~~s~~~L~km~~A~~~lnY 43 (320)
T COG3026 1 MKQ-LWFSLLLLLGSLLLSAAASAE-SASAAWLQKMNEASQSLNY 43 (320)
T ss_pred Cch-HHHHHHHHHHHHhhhhhhhcc-CccHHHHHHHHHHHHhcCc
Confidence 553 333344444444455544444 3334899999999988763
No 21
>PRK10598 lipoprotein; Provisional
Probab=39.36 E-value=57 Score=23.33 Aligned_cols=20 Identities=20% Similarity=0.483 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhhhhcCCC
Q 042401 27 ATQQRYVHLHNEAPRNVGIG 46 (126)
Q Consensus 27 ~~~~~il~~hN~~R~~~~~~ 46 (126)
.+.++.|+.|+.+=.+.|.|
T Consensus 30 ~Ein~yL~k~~~~~k~~G~~ 49 (186)
T PRK10598 30 QEINQYLAKHNNFEKQIGLP 49 (186)
T ss_pred HHHHHHHHHhccHHHhcCCC
Confidence 68889999999999999954
No 22
>PF15240 Pro-rich: Proline-rich
Probab=38.17 E-value=24 Score=25.04 Aligned_cols=15 Identities=27% Similarity=0.195 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhhccc
Q 042401 9 IFYLVVLAARIHLSS 23 (126)
Q Consensus 9 i~~l~~~~~~~~~~~ 23 (126)
|+|.+++|+|+++..
T Consensus 4 VLLSvALLALSSAQ~ 18 (179)
T PF15240_consen 4 VLLSVALLALSSAQS 18 (179)
T ss_pred HHHHHHHHHhhhccc
Confidence 333344445544433
No 23
>PF15284 PAGK: Phage-encoded virulence factor
Probab=38.08 E-value=33 Score=19.98 Aligned_cols=13 Identities=15% Similarity=0.294 Sum_probs=6.6
Q ss_pred CcchHHHHHHHHH
Q 042401 1 MSSINSLAIFYLV 13 (126)
Q Consensus 1 M~~~~~l~i~~l~ 13 (126)
|+.+..+++++++
T Consensus 1 Mkk~ksifL~l~~ 13 (61)
T PF15284_consen 1 MKKFKSIFLALVF 13 (61)
T ss_pred ChHHHHHHHHHHH
Confidence 6665555444333
No 24
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=33.81 E-value=49 Score=18.33 Aligned_cols=7 Identities=0% Similarity=-0.078 Sum_probs=3.1
Q ss_pred CcchHHH
Q 042401 1 MSSINSL 7 (126)
Q Consensus 1 M~~~~~l 7 (126)
|++.+.+
T Consensus 2 mKk~i~~ 8 (48)
T PRK10081 2 VKKTIAA 8 (48)
T ss_pred hHHHHHH
Confidence 4544433
No 25
>PRK11289 ampC beta-lactamase/D-alanine carboxypeptidase; Provisional
Probab=33.13 E-value=88 Score=24.61 Aligned_cols=46 Identities=13% Similarity=0.029 Sum_probs=20.2
Q ss_pred CcchHHHHHHHHHHHHH-Hhhcccc-ChHHHHHHHHHHHHhhhhcCCC
Q 042401 1 MSSINSLAIFYLVVLAA-RIHLSSA-NNATQQRYVHLHNEAPRNVGIG 46 (126)
Q Consensus 1 M~~~~~l~i~~l~~~~~-~~~~~~a-~~~~~~~il~~hN~~R~~~~~~ 46 (126)
|+.++.+++.+|+++.. ...+..+ +.+.++.+=+...++..+.+.|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~i~~~~~~~~~p 49 (384)
T PRK11289 2 MKMMLLLLLAALLLTASASAFAAAATPQQLKDIVDRTITPLMEEQDIP 49 (384)
T ss_pred cchhhHHHHHHHHHHhhhcccccccChHHHHHHHHHHHHHHHHhCCCC
Confidence 66665554444433322 2222211 2134444444466666655533
No 26
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=32.95 E-value=56 Score=16.95 Aligned_cols=6 Identities=17% Similarity=0.340 Sum_probs=3.2
Q ss_pred CcchHH
Q 042401 1 MSSINS 6 (126)
Q Consensus 1 M~~~~~ 6 (126)
||.+..
T Consensus 1 Mk~l~~ 6 (36)
T PF08194_consen 1 MKCLSL 6 (36)
T ss_pred CceeHH
Confidence 665443
No 27
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=32.43 E-value=92 Score=18.53 Aligned_cols=10 Identities=10% Similarity=0.265 Sum_probs=4.9
Q ss_pred CHHHHHHHHH
Q 042401 52 DKTLEDHSHS 61 (126)
Q Consensus 52 d~~La~~A~~ 61 (126)
++.+++.|++
T Consensus 60 ~~rIe~~Ar~ 69 (85)
T TIGR02209 60 HERIEKIAKK 69 (85)
T ss_pred HHHHHHHHHH
Confidence 4455555543
No 28
>COG5510 Predicted small secreted protein [Function unknown]
Probab=32.19 E-value=66 Score=17.43 Aligned_cols=7 Identities=29% Similarity=0.145 Sum_probs=3.0
Q ss_pred CcchHHH
Q 042401 1 MSSINSL 7 (126)
Q Consensus 1 M~~~~~l 7 (126)
|++.+.+
T Consensus 2 mk~t~l~ 8 (44)
T COG5510 2 MKKTILL 8 (44)
T ss_pred chHHHHH
Confidence 5553333
No 29
>COG1318 Predicted transcriptional regulators [Transcription]
Probab=31.82 E-value=41 Score=23.90 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=16.4
Q ss_pred CCccCCHHHHHHHHHHHH
Q 042401 47 IGMTWDKTLEDHSHSYAL 64 (126)
Q Consensus 47 ~~L~Wd~~La~~A~~~A~ 64 (126)
++|+|.+.|+..|-..|.
T Consensus 40 ~~lTWvdSLavAAga~ar 57 (182)
T COG1318 40 ERLTWVDSLAVAAGALAR 57 (182)
T ss_pred cccchhhHHHHHHHHHHH
Confidence 499999999999998886
No 30
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=31.37 E-value=1.3e+02 Score=20.17 Aligned_cols=61 Identities=8% Similarity=0.078 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCc-cCCHHHHHHHHHHHHhhcccCccccC-----CCCccceeeeec
Q 042401 27 ATQQRYVHLHNEAPRNVGIGIGM-TWDKTLEDHSHSYALKLKVDCIIEHS-----IRHYGKNLGWAD 87 (126)
Q Consensus 27 ~~~~~il~~hN~~R~~~~~~~~L-~Wd~~La~~A~~~A~~~a~~c~~~~~-----~~~~Geni~~~~ 87 (126)
+.++...+...++|--+--+-.+ .=|..+|..-+....++-........ -..||+-+-..+
T Consensus 29 ~~e~r~~~L~~~LRC~vCqnqsiadSna~iA~dmR~~Vr~~i~~G~sd~eI~~~~v~RYG~~Vl~~P 95 (126)
T PRK10144 29 QQQQQALNIASQLRCPQCQNQNLLESNAPVAVSMRHQVYSMVAEGKSEVEIIGWMTERYGDFVRYNP 95 (126)
T ss_pred HHHHHHHHHHHcCCCCCCCCCChhhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCeEEecC
Confidence 34445555566666543222011 12334444444444433222221111 137888776544
No 31
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=29.59 E-value=54 Score=17.33 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCc
Q 042401 27 ATQQRYVHLHNEAPRNVGIGIGM 49 (126)
Q Consensus 27 ~~~~~il~~hN~~R~~~~~~~~L 49 (126)
.-++.||..|=+++...|.. |+
T Consensus 17 ~RRk~IL~k~PeIk~L~G~d-p~ 38 (39)
T PF08557_consen 17 SRRKEILKKHPEIKKLMGPD-PL 38 (39)
T ss_pred HHHHHHHHhChHHHHHhCCC-CC
Confidence 56889999999999999887 65
No 32
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=29.33 E-value=44 Score=20.84 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=12.1
Q ss_pred CcchHHHHHHHHHHHHHHhhccccC
Q 042401 1 MSSINSLAIFYLVVLAARIHLSSAN 25 (126)
Q Consensus 1 M~~~~~l~i~~l~~~~~~~~~~~a~ 25 (126)
|.+ +.+++-+|++.+....++++|
T Consensus 1 MaR-RlwiLslLAVtLtVALAAPsQ 24 (100)
T PF05984_consen 1 MAR-RLWILSLLAVTLTVALAAPSQ 24 (100)
T ss_pred Cch-hhHHHHHHHHHHHHHhhcccc
Confidence 554 223344555555555555656
No 33
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=29.30 E-value=51 Score=23.23 Aligned_cols=8 Identities=38% Similarity=0.322 Sum_probs=4.8
Q ss_pred CcchHHHH
Q 042401 1 MSSINSLA 8 (126)
Q Consensus 1 M~~~~~l~ 8 (126)
||.++.|+
T Consensus 1 MKll~~li 8 (212)
T PF11912_consen 1 MKLLISLI 8 (212)
T ss_pred CcHHHHHH
Confidence 88755443
No 34
>PHA03066 Hypothetical protein; Provisional
Probab=27.31 E-value=1.7e+02 Score=19.09 Aligned_cols=40 Identities=20% Similarity=0.127 Sum_probs=18.3
Q ss_pred CcchHHHHHHHHHHHHH-HhhccccChHHHHHHHHHHHHhhhh
Q 042401 1 MSSINSLAIFYLVVLAA-RIHLSSANNATQQRYVHLHNEAPRN 42 (126)
Q Consensus 1 M~~~~~l~i~~l~~~~~-~~~~~~a~~~~~~~il~~hN~~R~~ 42 (126)
|++...++++++.++++ ...--+++ --|..+...|+.|..
T Consensus 1 ~~~~~~l~fFi~Fl~~~Y~~n~~PTN--KlqlaV~~l~~e~~~ 41 (110)
T PHA03066 1 ASSLLYLLFFIIFLCISYYFNYYPTN--KLQMAVKELNRENAI 41 (110)
T ss_pred CchHHHHHHHHHHHHHHHHHhhccCh--hHHhhhhhhhHHHHH
Confidence 56655444333333333 22223344 355556666655533
No 35
>PF03295 Pox_TAA1: Poxvirus trans-activator protein A1 C-terminal; InterPro: IPR004975 Late transcription factor VLTF-2, acts with RNA polymerase to initiate transcription from late gene promoters [].
Probab=26.97 E-value=54 Score=19.12 Aligned_cols=19 Identities=16% Similarity=0.351 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhhhhcCC
Q 042401 27 ATQQRYVHLHNEAPRNVGI 45 (126)
Q Consensus 27 ~~~~~il~~hN~~R~~~~~ 45 (126)
++.+++++..|.+|.+-|.
T Consensus 24 ~~Pe~Vi~iIN~lR~keGv 42 (63)
T PF03295_consen 24 EDPEEVINIINELRNKEGV 42 (63)
T ss_pred cCHHHHHHHHHHhhhccCc
Confidence 5688999999999998774
No 36
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.96 E-value=76 Score=20.44 Aligned_cols=14 Identities=36% Similarity=0.358 Sum_probs=7.5
Q ss_pred CcchHHHHHHHHHH
Q 042401 1 MSSINSLAIFYLVV 14 (126)
Q Consensus 1 M~~~~~l~i~~l~~ 14 (126)
||.++.+++++++.
T Consensus 1 MKk~~ll~~~ll~s 14 (114)
T PF11777_consen 1 MKKIILLASLLLLS 14 (114)
T ss_pred CchHHHHHHHHHHH
Confidence 78766554343333
No 37
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=23.69 E-value=1.7e+02 Score=17.27 Aligned_cols=10 Identities=10% Similarity=0.046 Sum_probs=5.4
Q ss_pred HHHHHHHHhh
Q 042401 31 RYVHLHNEAP 40 (126)
Q Consensus 31 ~il~~hN~~R 40 (126)
+.+...|.|=
T Consensus 28 ealkY~N~yL 37 (66)
T PF07438_consen 28 EALKYMNDYL 37 (66)
T ss_pred HHHHHHHHHH
Confidence 4455566553
No 38
>TIGR03656 IsdC heme uptake protein IsdC. Isd proteins are iron-regulated surface proteins found in Bacillus, Staphylococcus and Listeria species and are responsible for heme scavenging from hemoproteins. The IsdC protein consists of an N-terminal hydrophobic signal sequence, a central NEAT (NEAr Transporter, pfam05031) domain which confers the ability to bind heme and a C-terminal SrtB processing signal which targets the protein to the cell wall. IsdC is believed to make a direct contact with, and transfer heme to, the heme-binding component (IsdE) of an ABC transporter in the cytoplasmic membrane, and to receive heme from other NEAT-containing heme-binding proteins also localized in the cell wall.
Probab=23.18 E-value=73 Score=23.39 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=13.1
Q ss_pred CcchHHHHHHHHHHHHHHhhcccc
Q 042401 1 MSSINSLAIFYLVVLAARIHLSSA 24 (126)
Q Consensus 1 M~~~~~l~i~~l~~~~~~~~~~~a 24 (126)
|+.++.+++++.++.+.+.+...+
T Consensus 1 mk~~~~~~~~~~~~~f~~~~~~~~ 24 (217)
T TIGR03656 1 MKKILVFAFFTTILAFIILSAGFS 24 (217)
T ss_pred CcchhhHHHHHHHHHHhccccccc
Confidence 777666655555555555444443
No 39
>PF12099 DUF3575: Protein of unknown function (DUF3575); InterPro: IPR021958 This family of proteins are functionally uncharacterised. This family is only found in bacteria. Proteins in this family are typically between 187 to 236 amino acids in length.
Probab=22.60 E-value=72 Score=22.63 Aligned_cols=12 Identities=33% Similarity=0.487 Sum_probs=7.0
Q ss_pred CcchHHHHHHHH
Q 042401 1 MSSINSLAIFYL 12 (126)
Q Consensus 1 M~~~~~l~i~~l 12 (126)
||++..++++++
T Consensus 1 ~~~~~~~~~~~~ 12 (189)
T PF12099_consen 1 MKKIRILFLLLL 12 (189)
T ss_pred CceehHHHHHHH
Confidence 787765544433
No 40
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=22.46 E-value=64 Score=25.64 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCccCCHHHHHHHHHHH
Q 042401 27 ATQQRYVHLHNEAPRNVGIGIGMTWDKTLEDHSHSYA 63 (126)
Q Consensus 27 ~~~~~il~~hN~~R~~~~~~~~L~Wd~~La~~A~~~A 63 (126)
.+...+....|.||..+|+. |+.|++.|+..-
T Consensus 270 ~D~~~L~~~l~~Yr~~FGLD-----d~SL~~lA~~~g 301 (376)
T PF05049_consen 270 CDLEILEKCLNQYRSSFGLD-----DESLQKLAQDTG 301 (376)
T ss_dssp HHHHHHHHHHHHHHHHTT-S-----HHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhCCC-----HHHHHHHHHHhC
Confidence 68888999999999999999 888888888774
No 41
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=22.25 E-value=57 Score=17.83 Aligned_cols=12 Identities=25% Similarity=0.293 Sum_probs=5.4
Q ss_pred HHHHHhhccccC
Q 042401 14 VLAARIHLSSAN 25 (126)
Q Consensus 14 ~~~~~~~~~~a~ 25 (126)
+++.+++.++-+
T Consensus 11 fflG~ISlSlCe 22 (46)
T PF03032_consen 11 FFLGTISLSLCE 22 (46)
T ss_pred HHHHHcccchHH
Confidence 344444444433
No 42
>PF09169 BRCA-2_helical: BRCA2, helical; InterPro: IPR015252 The mechanism of double-strand break repair (DSBR) is evolutionarily conserved and can be divided into two main pathways: homologous recombination (HR) and non-homologous end joining (NHEJ). NHEJ involves the ligation of broken DNA ends, requires little or no sequence homology and may be mutagenic. HR can occur conservatively by gene conversion using a homologous strand of DNA as a template or non-conservatively by single-strand annealing, which takes place between repeat sequences and can lead to the loss of intervening genomic DNA or translocations. Brca2 cancer susceptibility protein functions in double-strand DNA break repair by homologous recombination []. Double-strand breaks in DNA elicit a coordinated response that results in either repair of the damage or elimination of the cell. Mutations in Brca2 lead to various types of cancer, and also give rise to the multi-faceted Fanconi anaemia syndrome []. Brca2 is an essential component of the homologous recombination repair pathway and the Fanconi Anaemia complex []. This entry represents a domain found in Brca2 proteins. This domain adopts a helical structure, consisting of a four-helix cluster core (alpha 1, alpha 8, alpha 9, alpha 10) and two successive beta-hairpins (beta 1 to beta 4). An approximately 50-amino acid segment that contains four short helices (alpha 2 to alpha 4), meanders around the surface of the core structure. In BRCA2, the alpha 9 and alpha 10 helices pack with BRCA-2_OB1 (IPR015187 from INTERPRO) through van der Waals contacts involving hydrophobic and aromatic residues, and also through side-chain and backbone hydrogen bonds. This domain binds the 70-amino acid DSS1 (deleted in split-hand/split foot syndrome) protein, which was originally identified as one of three genes that map to a 1.5-Mb locus deleted in an inherited developmental malformation syndrome []. ; GO: 0003697 single-stranded DNA binding, 0000724 double-strand break repair via homologous recombination, 0006310 DNA recombination, 0007090 regulation of S phase of mitotic cell cycle, 0005634 nucleus; PDB: 1MIU_A 1IYJ_D.
Probab=21.78 E-value=76 Score=22.90 Aligned_cols=18 Identities=33% Similarity=0.846 Sum_probs=13.8
Q ss_pred HHHHhhhHHHHHHhhhcc
Q 042401 96 VKMWMCGHYTQVVWRKSV 113 (126)
Q Consensus 96 v~~W~~~h~tqmvw~~t~ 113 (126)
-..|...||..+||+-+.
T Consensus 144 s~~WV~NHyrWIVWKLA~ 161 (195)
T PF09169_consen 144 SKEWVENHYRWIVWKLAS 161 (195)
T ss_dssp -HHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 356779999999998653
No 43
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=21.38 E-value=1.5e+02 Score=17.13 Aligned_cols=14 Identities=14% Similarity=0.093 Sum_probs=9.4
Q ss_pred HHHHHHhhhhcCCC
Q 042401 33 VHLHNEAPRNVGIG 46 (126)
Q Consensus 33 l~~hN~~R~~~~~~ 46 (126)
...||+.+.....+
T Consensus 33 ~~hHq~k~~a~~~~ 46 (59)
T PF11119_consen 33 WVHHQDKKQAQQIE 46 (59)
T ss_pred HHHHHHHHhccccc
Confidence 67788877665544
No 44
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=21.04 E-value=2.8e+02 Score=18.83 Aligned_cols=20 Identities=0% Similarity=-0.007 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhhhhcCCC
Q 042401 27 ATQQRYVHLHNEAPRNVGIG 46 (126)
Q Consensus 27 ~~~~~il~~hN~~R~~~~~~ 46 (126)
+..++-+...+.+|..+.+|
T Consensus 36 ~Y~~DT~~Vi~tlr~~i~lp 55 (135)
T TIGR03044 36 DYVEDTLAVIQTLREAIDLP 55 (135)
T ss_pred hHHHHHHHHHHHHHHHHcCC
Confidence 78899999999999999988
No 45
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=20.07 E-value=1.2e+02 Score=17.30 Aligned_cols=16 Identities=13% Similarity=0.434 Sum_probs=13.6
Q ss_pred ccCCHHHHHHHHHHHH
Q 042401 49 MTWDKTLEDHSHSYAL 64 (126)
Q Consensus 49 L~Wd~~La~~A~~~A~ 64 (126)
|.|...-++.|+..|.
T Consensus 1 l~Wt~~Aa~eAeavAa 16 (56)
T PF04863_consen 1 LSWTLRAAEEAEAVAA 16 (56)
T ss_dssp -STTHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHhhc
Confidence 6899999999999886
Done!