BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042402
(523 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93Y22|COPD_ARATH Coatomer subunit delta OS=Arabidopsis thaliana GN=At5g05010 PE=1
SV=2
Length = 527
Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/533 (75%), Positives = 455/533 (85%), Gaps = 16/533 (3%)
Query: 1 MVVLAASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 60
MVVLAA+IV KSGK++VSR +VDMSRIRIEGLLAAFPKLVG GKQHTY+ETENVRYVYQP
Sbjct: 1 MVVLAAAIVVKSGKVIVSRHYVDMSRIRIEGLLAAFPKLVGMGKQHTYIETENVRYVYQP 60
Query: 61 IEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLG 120
IEAL+LLLVT KQSNILEDL TL LLSKLVPEYS SLDEEGI + +FEL+FAFDEVISLG
Sbjct: 61 IEALFLLLVTTKQSNILEDLATLTLLSKLVPEYSMSLDEEGISRASFELIFAFDEVISLG 120
Query: 121 HKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDKGG 180
HKE+VTVAQVKQYCEMESHEEKLHKLV+QSKIN+TKDVMKRKA+EIDKSKIEKN+ GG
Sbjct: 121 HKESVTVAQVKQYCEMESHEEKLHKLVMQSKINDTKDVMKRKANEIDKSKIEKNK--PGG 178
Query: 181 FMSLQSMGSGRIESSFSDMSISSGGGGFGSGSGFGLATTDVETFSSKSKGRPPSSANAPP 240
F S+ SMGSGR+ES F+++SISSGGGG +DV+ ++K K R SS APP
Sbjct: 179 FSSMGSMGSGRLESGFNELSISSGGGGGYGSGSGFGMISDVDPINTKPKDRSRSSVTAPP 238
Query: 241 KGLGMQLGKSQRTNQFLESLKAEGEVILEDVKPIAGQSRAAAAAPPLTDPITLTVEEKIN 300
K GM+LGKS + NQ +ESLKAEGE ++EDVKP GQS+ AAAPP TDP TLTVEEK+N
Sbjct: 239 KSSGMKLGKSGK-NQLMESLKAEGEDVIEDVKP-TGQSK--AAAPPPTDPFTLTVEEKLN 294
Query: 301 VSLKRDGGMSNFDVQGTLSLQILNQEDGLIQVQIETGGNPGILFKTHPNMNKELFTHENI 360
V+L+RDGG+S+FD+QGTLSLQILNQEDG +QVQI TG NP ILFKTHPN+N+++F +ENI
Sbjct: 295 VALRRDGGLSSFDMQGTLSLQILNQEDGFVQVQIATGENPEILFKTHPNINRDMFNNENI 354
Query: 361 LGLKDPNRPFPQAK--------LWRMQSADESMVPLTINCWPSVSGNETYVSIEYEASTM 412
LGLK P++PFP + WRMQ ADESMVPLTINCWPSVSGNETYVS+EYEAS+M
Sbjct: 355 LGLKRPDQPFPTGQGGDGVGLLRWRMQRADESMVPLTINCWPSVSGNETYVSLEYEASSM 414
Query: 413 FDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFVVPPA 472
FDL NV+ISVPLPALREAPSVRQ DGEWRYD RNSVLEW+ILLIDNSNRSGSMEFVVPP
Sbjct: 415 FDLTNVIISVPLPALREAPSVRQCDGEWRYDPRNSVLEWSILLIDNSNRSGSMEFVVPPV 474
Query: 473 DSSSFFPISVRFSATSTYSDLKVVNIIPLR--GGAPPKFSQRTVLITENYQVV 523
DSS FFPISV+F+ATSTYS LKV +IPLR GGA P+F QRT LI +NYQV+
Sbjct: 475 DSSVFFPISVQFAATSTYSGLKVTGMIPLRGGGGATPRFVQRTQLIAQNYQVI 527
>sp|Q0DJ99|COPD2_ORYSJ Coatomer subunit delta-2 OS=Oryza sativa subsp. japonica
GN=Os05g0311000 PE=2 SV=1
Length = 523
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/529 (72%), Positives = 451/529 (85%), Gaps = 12/529 (2%)
Query: 1 MVVLAASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 60
MVVLAASI+SKSGK LVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP
Sbjct: 1 MVVLAASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 60
Query: 61 IEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLG 120
IE LYLLL+TNKQSNILEDL+TLRLLSKLVPEYS SLDEEG+CKTAFEL+FAFDE I LG
Sbjct: 61 IEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFELIFAFDEAICLG 120
Query: 121 HKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDKGG 180
+KENVTV QVKQYCEMESHEEK HKL++QSKINET+DVMK+KASE+DK K+E+ + DKGG
Sbjct: 121 NKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETRDVMKKKASELDKMKMERGKLDKGG 180
Query: 181 FMSLQSMGSGRIESSFSDMSISSGGGGFGSGSGFGLATTDVETFSSKSKGRPPSSANAPP 240
+ ++ G +E +F DMSI+ G GSGSG G + D+++F+SK KGRP ++A AP
Sbjct: 181 YSAIS--GPRVVEKAFGDMSITGSGF--GSGSGLGGLSMDMDSFASKPKGRPSAAATAPG 236
Query: 241 KGLGMQLGKSQRTNQFLESLKAEGEVILEDVKPIAGQSRAAAAAPPLTDPITLTVEEKIN 300
KGLGM+LGK+Q+TNQFLESLKAEGEVILEDV+P + QSR + P +DP+T+T+EEK+N
Sbjct: 237 KGLGMKLGKTQKTNQFLESLKAEGEVILEDVQPSSVQSRVSPLPP--SDPVTVTIEEKLN 294
Query: 301 VSLKRDGGMSNFDVQGTLSLQILNQEDGLIQVQIETGGNPGILFKTHPNMNKELFTHENI 360
V++KRDGG++NFDVQGTL+LQ+LN DG IQ+QIE PG+ FKTHPN+NK+LF + +
Sbjct: 295 VTVKRDGGVNNFDVQGTLALQVLNDTDGFIQLQIENQDVPGLSFKTHPNINKDLFNSQQV 354
Query: 361 LGLKDPNRPFPQAK------LWRMQSADESMVPLTINCWPSVSGNETYVSIEYEASTMFD 414
+G KDPNRPFP + WR+ DES +PL++NCWPSVSGNETYV+IEYEA+ MFD
Sbjct: 355 VGAKDPNRPFPSGQNETPLVKWRIHGMDESSLPLSVNCWPSVSGNETYVNIEYEAAEMFD 414
Query: 415 LRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFVVPPADS 474
L NVVIS+PLPALREAPSVRQIDGEWRYDSRNSVLEW+ILLID SNRSGSMEFVVPPAD
Sbjct: 415 LHNVVISIPLPALREAPSVRQIDGEWRYDSRNSVLEWSILLIDQSNRSGSMEFVVPPADP 474
Query: 475 SSFFPISVRFSATSTYSDLKVVNIIPLRGGAPPKFSQRTVLITENYQVV 523
S+FFPIS+ FSA+ST+SDLKV I PL+ G PPK+SQR L+T NYQVV
Sbjct: 475 STFFPISIGFSASSTFSDLKVTGIRPLKDGNPPKYSQRARLVTANYQVV 523
>sp|Q0DJA0|COPD1_ORYSJ Coatomer subunit delta-1 OS=Oryza sativa subsp. japonica
GN=Os05g0310800 PE=2 SV=1
Length = 524
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/530 (72%), Positives = 453/530 (85%), Gaps = 13/530 (2%)
Query: 1 MVVLAASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 60
MVVLAASI+SKSGK LVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP
Sbjct: 1 MVVLAASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 60
Query: 61 IEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLG 120
IE LYLLL+TNKQSNILEDL+TLRLLSKLVPEYS SLDEEG+CKTAFEL+FAFDE ISLG
Sbjct: 61 IEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFELIFAFDEAISLG 120
Query: 121 HKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDKGG 180
+KENVTV QVKQYCEMESHEEK HKL++QSKINET+DVMK+KASE+DK ++E+ + DKGG
Sbjct: 121 NKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETRDVMKKKASELDKMRMERGKLDKGG 180
Query: 181 FMSLQSMGSGRIESSFSDMSISSGGGGFGSGSGFGLATTDVETFSSKSK-GRPPSSANAP 239
+ S+ G IE +F+DMSI+ G GSGSG G D+++F+SK K GRP ++A AP
Sbjct: 181 YSSIS--GPRVIEKTFNDMSITGSGF--GSGSGLGGLGMDMDSFASKPKGGRPSAAATAP 236
Query: 240 PKGLGMQLGKSQRTNQFLESLKAEGEVILEDVKPIAGQSRAAAAAPPLTDPITLTVEEKI 299
KGLGM+LGK+Q+TNQFLESLKAEGEVILEDV+P + QSRA+ P +DP+T+T+EEK+
Sbjct: 237 GKGLGMKLGKTQKTNQFLESLKAEGEVILEDVQPSSVQSRASPLPP--SDPVTVTIEEKL 294
Query: 300 NVSLKRDGGMSNFDVQGTLSLQILNQEDGLIQVQIETGGNPGILFKTHPNMNKELFTHEN 359
NV++KRDGG++NFDVQGTL+LQ+LN DG IQ+QIE PG+ FKTHPN+NK+LF +
Sbjct: 295 NVTVKRDGGVNNFDVQGTLALQVLNDADGFIQLQIENQDVPGLSFKTHPNINKDLFNSQQ 354
Query: 360 ILGLKDPNRPFPQAK------LWRMQSADESMVPLTINCWPSVSGNETYVSIEYEASTMF 413
++G KDPNRPFP + WR+Q DES +PL++NCWPSVSG+ETYV+IEYEA+ MF
Sbjct: 355 VVGAKDPNRPFPSGQNETPLVKWRIQGMDESSLPLSVNCWPSVSGSETYVNIEYEAAEMF 414
Query: 414 DLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFVVPPAD 473
DL NVVIS+PLPALREAPSVRQIDGEW+YDSRNSVLEW+ILLID SNRSGSMEFVVPPAD
Sbjct: 415 DLHNVVISIPLPALREAPSVRQIDGEWKYDSRNSVLEWSILLIDQSNRSGSMEFVVPPAD 474
Query: 474 SSSFFPISVRFSATSTYSDLKVVNIIPLRGGAPPKFSQRTVLITENYQVV 523
S+FFPIS+ FSA+ST+SDLKV I PL+ G PPK+SQR L+ NYQVV
Sbjct: 475 PSTFFPISIGFSASSTFSDLKVTGIRPLKDGNPPKYSQRARLVAANYQVV 524
>sp|P49661|COPD3_ORYSJ Coatomer subunit delta-3 OS=Oryza sativa subsp. japonica
GN=Os01g0833700 PE=2 SV=2
Length = 518
Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/532 (70%), Positives = 436/532 (81%), Gaps = 23/532 (4%)
Query: 1 MVVLAASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 60
MVVLAASI+SKSGK LVSRQFVDMSRIRI+GLLAAFPKLVG+GKQHTYVETENVRYVYQP
Sbjct: 1 MVVLAASIISKSGKALVSRQFVDMSRIRIDGLLAAFPKLVGSGKQHTYVETENVRYVYQP 60
Query: 61 IEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLG 120
IEALYLLL+TNKQSNILEDL+TLRLLSKL+PEY+ SLDEEG+CK AFELLFAF E ISLG
Sbjct: 61 IEALYLLLITNKQSNILEDLDTLRLLSKLIPEYAPSLDEEGVCKAAFELLFAFIEAISLG 120
Query: 121 HKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDKGG 180
+KENVTVAQVKQYCEMESHEEKLHKLV+QSKINETKDVM+RK +EI+KSK ++ + DKGG
Sbjct: 121 NKENVTVAQVKQYCEMESHEEKLHKLVMQSKINETKDVMRRKVTEIEKSKTDRGKPDKGG 180
Query: 181 FMSLQSMGSGRIESSFSDMSISSGGGGFGSGSGFGLATTDVETFSSKSKGRPPSSANAPP 240
F GS R +SFSDM I G G D+++F+ K+KGRP + A A
Sbjct: 181 F------GSLRTPNSFSDMGIRG------GGPGGDPIFGDMDSFTHKAKGRPSAPAPASA 228
Query: 241 KGL---GMQLGKSQRTNQFLESLKAEGEVILEDVKPIAGQSRAAAAAPPLTDPITLTVEE 297
GM+L K+Q+TNQFLESLKAEGEVILED +P A QSR++ P +DPIT+T+EE
Sbjct: 229 STKVPGGMKLSKAQKTNQFLESLKAEGEVILEDTQPSATQSRSSYIPP--SDPITVTIEE 286
Query: 298 KINVSLKRDGGMSNFDVQGTLSLQILNQEDGLIQVQIETGGNPGILFKTHPNMNKELFTH 357
K+NV++KRDGG+SNFD+QGTL+LQILN DG IQ+QIE PG+ FKTHPN+NKELF
Sbjct: 287 KLNVTVKRDGGVSNFDIQGTLALQILNDTDGFIQLQIENQDVPGLNFKTHPNINKELFNS 346
Query: 358 ENILGLKDPNRPFPQAK------LWRMQSADESMVPLTINCWPSVSGNETYVSIEYEAST 411
+ I+G KDPNRPFP + WR+Q +ES +PL +NCWPSVSGNETYV+IEYEAS
Sbjct: 347 QQIVGAKDPNRPFPSGQNETPLVKWRIQELNESSLPLAVNCWPSVSGNETYVNIEYEASE 406
Query: 412 MFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFVVPP 471
MFDL NVVIS+PLPALREAP VRQIDGEWRYDSRNSVLEW+I+L+D SNRSGS+EF VP
Sbjct: 407 MFDLHNVVISIPLPALREAPGVRQIDGEWRYDSRNSVLEWSIILVDQSNRSGSLEFTVPA 466
Query: 472 ADSSSFFPISVRFSATSTYSDLKVVNIIPLRGGAPPKFSQRTVLITENYQVV 523
AD S+FFPISV FSA++T+SDLKV I PLR G+PPKFSQR L+T NYQVV
Sbjct: 467 ADPSTFFPISVGFSASNTFSDLKVTAIRPLREGSPPKFSQRNRLVTYNYQVV 518
>sp|Q66H80|COPD_RAT Coatomer subunit delta OS=Rattus norvegicus GN=Arcn1 PE=2 SV=1
Length = 511
Score = 444 bits (1142), Expect = e-124, Method: Compositional matrix adjust.
Identities = 226/535 (42%), Positives = 343/535 (64%), Gaps = 36/535 (6%)
Query: 1 MVVLAASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 60
MV+LAA++ +K+GK +VSRQFV+M+R RIEGLLAAFPKL+ TGKQHT+VETE+VRYVYQP
Sbjct: 1 MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQP 60
Query: 61 IEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLG 120
+E LY++L+T K SNILEDLETLRL S+++PEY +L+E I + F+L+FAFDE+++LG
Sbjct: 61 MEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALG 120
Query: 121 HKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDKGG 180
++ENV +AQ++ + EM+SHEEK+ + V +++ E K M+RKA E+ +++ + R K
Sbjct: 121 YRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKK- 179
Query: 181 FMSLQSMGSGRIESSFSDMSISSGGGGFGSG--SGFGLATTDVETF--SSKSKGRP-PSS 235
+ G GGFGS SG A ET + K K P P+
Sbjct: 180 ---------------------APGFGGFGSSAVSGGSTAAMITETIIETDKPKVAPAPAR 218
Query: 236 ANAPPKGLGMQLGKSQRTNQFLESLKAEGEVILEDVKPIAGQSRAAAAAPPLT-DPITLT 294
+ P K L + K + + F++ LK+EGE I+ A APP+ + + +
Sbjct: 219 PSGPSKALKLG-AKGKEVDNFVDKLKSEGETIMSSNMGKRTSEAAKVHAPPINMESVHMK 277
Query: 295 VEEKINVSLKRDGGMSNFDVQGTLSLQILNQEDGLIQVQIETGGNPGILFKTHPNMNKEL 354
+EEKI ++ RDGG+ N ++ G + L+I + + G I++ +E G+ +THPN++K+L
Sbjct: 278 IEEKITLTCGRDGGLQNMELHGMIMLRISDDKFGRIRLHVENEDKKGVQLQTHPNVDKKL 337
Query: 355 FTHENILGLKDPNRPFPQAK-----LWRMQSADESMVPLTINCWPSVSGNETYVSIEYE- 408
FT E+++GLK+P + FP WR+Q+ +ES +PLTINCWPS SGN V+IEYE
Sbjct: 338 FTAESLIGLKNPEKSFPVNSDVGVLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYEL 397
Query: 409 ASTMFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFV 468
+L +VVI++PLP+ AP + +IDGE+R+DSR + LEW + +ID N+SGS+EF
Sbjct: 398 QEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFS 457
Query: 469 VPPADSSSFFPISVRFSATSTYSDLKVVNIIPLRGGAPPKFSQRTVLITENYQVV 523
+ P + FFP+ V F + Y +++V + + G +P +FS T + + Y+++
Sbjct: 458 I-PGQPNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
>sp|Q5XJY5|COPD_MOUSE Coatomer subunit delta OS=Mus musculus GN=Arcn1 PE=2 SV=2
Length = 511
Score = 442 bits (1138), Expect = e-123, Method: Compositional matrix adjust.
Identities = 225/535 (42%), Positives = 342/535 (63%), Gaps = 36/535 (6%)
Query: 1 MVVLAASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 60
MV+LAA++ +K+GK +VSRQFV+M+R RIEGLLAAFPKL+ TGKQHT+VETE+VRYVYQP
Sbjct: 1 MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQP 60
Query: 61 IEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLG 120
+E LY++L+T K SNILEDLETLRL S+++PEY +L+E I + F+L+FAFDE+++LG
Sbjct: 61 MEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALG 120
Query: 121 HKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDKGG 180
++ENV +AQ++ + EM+SHEEK+ + V +++ E K M+RKA E+ +++ + R K
Sbjct: 121 YRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKK- 179
Query: 181 FMSLQSMGSGRIESSFSDMSISSGGGGFGSG--SGFGLATTDVETF--SSKSKGRP-PSS 235
+ G GGFGS SG A ET + K K P P+
Sbjct: 180 ---------------------APGFGGFGSSAVSGGSTAAMITETIIETDKPKVAPAPAR 218
Query: 236 ANAPPKGLGMQLGKSQRTNQFLESLKAEGEVILEDVKPIAGQSRAAAAAPPLT-DPITLT 294
+ P K L + K + + F++ LK+EGE I+ APP+ + + +
Sbjct: 219 PSGPSKALKLG-AKGKEVDNFVDKLKSEGETIMSSNMGKRTSEATKVHAPPINMESVHMK 277
Query: 295 VEEKINVSLKRDGGMSNFDVQGTLSLQILNQEDGLIQVQIETGGNPGILFKTHPNMNKEL 354
+EEKI ++ RDGG+ N ++ G + L+I + + G I++ +E G+ +THPN++K+L
Sbjct: 278 IEEKITLTCGRDGGLQNMELHGMIMLRISDDKFGRIRLHVENEDKKGVQLQTHPNVDKKL 337
Query: 355 FTHENILGLKDPNRPFPQAK-----LWRMQSADESMVPLTINCWPSVSGNETYVSIEYE- 408
FT E+++GLK+P + FP WR+Q+ +ES +PLTINCWPS SGN V+IEYE
Sbjct: 338 FTAESLIGLKNPEKSFPVNSDVGVLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYEL 397
Query: 409 ASTMFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFV 468
+L +VVI++PLP+ AP + +IDGE+R+DSR + LEW + +ID N+SGS+EF
Sbjct: 398 QEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFS 457
Query: 469 VPPADSSSFFPISVRFSATSTYSDLKVVNIIPLRGGAPPKFSQRTVLITENYQVV 523
+ P + FFP+ V F + Y +++V + + G +P +FS T + + Y+++
Sbjct: 458 I-PGQPNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
>sp|Q5RA77|COPD_PONAB Coatomer subunit delta OS=Pongo abelii GN=ARCN1 PE=2 SV=1
Length = 511
Score = 440 bits (1132), Expect = e-122, Method: Compositional matrix adjust.
Identities = 224/535 (41%), Positives = 342/535 (63%), Gaps = 36/535 (6%)
Query: 1 MVVLAASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 60
MV+LAA++ +K+GK +VSRQFV+M+R RIEGLLAAFPKL+ TGKQHT+VETE+VRYVYQP
Sbjct: 1 MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQP 60
Query: 61 IEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLG 120
+E LY++L+T K SNILEDLETLRL S+++PEY +L+E I + F+L+FAFDE+++LG
Sbjct: 61 MEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALG 120
Query: 121 HKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDKGG 180
++ENV +AQ++ + EM+SHEEK+ + V +++ E K M+RKA E+ +++ + R K
Sbjct: 121 YRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKK- 179
Query: 181 FMSLQSMGSGRIESSFSDMSISSGGGGFGSG--SGFGLATTDVETF--SSKSKGRP-PSS 235
+ G GGFGS SG A ET + K K P P+
Sbjct: 180 ---------------------APGFGGFGSSAVSGGSTAAMITETIIETDKPKVAPAPAR 218
Query: 236 ANAPPKGLGMQLGKSQRTNQFLESLKAEGEVILEDVKPIAGQSRAAAAAPPLT-DPITLT 294
+ P K L + K + + F++ LK+EGE I+ + APP+ + + +
Sbjct: 219 PSGPSKALKLG-AKGKEVDNFVDKLKSEGETIMSSSMGKRTSEASKMHAPPINMESVHMK 277
Query: 295 VEEKINVSLKRDGGMSNFDVQGTLSLQILNQEDGLIQVQIETGGNPGILFKTHPNMNKEL 354
+EEKI ++ RDGG+ N ++ G + L+I + + G I++ +E G+ +THPN++K+L
Sbjct: 278 IEEKITLTCGRDGGLQNMELHGMIMLRISDDKYGRIRLHVENEDKKGVQLQTHPNVDKKL 337
Query: 355 FTHENILGLKDPNRPFPQAK-----LWRMQSADESMVPLTINCWPSVSGNETYVSIEYE- 408
FT E+++GLK+P + FP WR+Q+ +ES +PLTINCWPS SGN V+IEYE
Sbjct: 338 FTAESLIGLKNPEKSFPVNSDVGVLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYEL 397
Query: 409 ASTMFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFV 468
+L +VVI++PLP+ AP + +IDGE+R+DSR + LEW + +ID N+SGS+EF
Sbjct: 398 QEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFS 457
Query: 469 VPPADSSSFFPISVRFSATSTYSDLKVVNIIPLRGGAPPKFSQRTVLITENYQVV 523
+ + FFP+ V F + Y +++V + + G +P +FS T + + Y+++
Sbjct: 458 I-AGQPNDFFPVQVSFVSKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
>sp|P48444|COPD_HUMAN Coatomer subunit delta OS=Homo sapiens GN=ARCN1 PE=1 SV=1
Length = 511
Score = 440 bits (1131), Expect = e-122, Method: Compositional matrix adjust.
Identities = 224/535 (41%), Positives = 341/535 (63%), Gaps = 36/535 (6%)
Query: 1 MVVLAASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 60
MV+LAA++ +K+GK +VSRQFV+M+R RIEGLLAAFPKL+ TGKQHT+VETE+VRYVYQP
Sbjct: 1 MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQP 60
Query: 61 IEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLG 120
+E LY++L+T K SNILEDLETLRL S+++PEY +L+E I + F+L+FAFDE+++LG
Sbjct: 61 MEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALG 120
Query: 121 HKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDKGG 180
++ENV +AQ++ + EM+SHEEK+ + V +++ E K M+RKA E+ +++ + R K
Sbjct: 121 YRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKK- 179
Query: 181 FMSLQSMGSGRIESSFSDMSISSGGGGFGSG--SGFGLATTDVETF--SSKSKGRP-PSS 235
+ G GGFGS SG A ET + K K P P+
Sbjct: 180 ---------------------APGFGGFGSSAVSGGSTAAMITETIIETDKPKVAPAPAR 218
Query: 236 ANAPPKGLGMQLGKSQRTNQFLESLKAEGEVILEDVKPIAGQSRAAAAAPPLT-DPITLT 294
+ P K L + K + + F++ LK+EGE I+ APP+ + + +
Sbjct: 219 PSGPSKALKLG-AKGKEVDNFVDKLKSEGETIMSSSMGKRTSEATKMHAPPINMESVHMK 277
Query: 295 VEEKINVSLKRDGGMSNFDVQGTLSLQILNQEDGLIQVQIETGGNPGILFKTHPNMNKEL 354
+EEKI ++ RDGG+ N ++ G + L+I + + G I++ +E G+ +THPN++K+L
Sbjct: 278 IEEKITLTCGRDGGLQNMELHGMIMLRISDDKYGRIRLHVENEDKKGVQLQTHPNVDKKL 337
Query: 355 FTHENILGLKDPNRPFPQAK-----LWRMQSADESMVPLTINCWPSVSGNETYVSIEYE- 408
FT E+++GLK+P + FP WR+Q+ +ES +PLTINCWPS SGN V+IEYE
Sbjct: 338 FTAESLIGLKNPEKSFPVNSDVGVLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYEL 397
Query: 409 ASTMFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFV 468
+L +VVI++PLP+ AP + +IDGE+R+DSR + LEW + +ID N+SGS+EF
Sbjct: 398 QEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFS 457
Query: 469 VPPADSSSFFPISVRFSATSTYSDLKVVNIIPLRGGAPPKFSQRTVLITENYQVV 523
+ + FFP+ V F + Y +++V + + G +P +FS T + + Y+++
Sbjct: 458 I-AGQPNDFFPVQVSFVSKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
>sp|P53619|COPD_BOVIN Coatomer subunit delta OS=Bos taurus GN=ARCN1 PE=1 SV=1
Length = 511
Score = 440 bits (1131), Expect = e-122, Method: Compositional matrix adjust.
Identities = 221/535 (41%), Positives = 342/535 (63%), Gaps = 36/535 (6%)
Query: 1 MVVLAASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 60
MV+LAA++ +K+GK +VSRQFV+M+R RIEGLLAAFPKL+ TGKQHT+VETE+VRYVYQP
Sbjct: 1 MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQP 60
Query: 61 IEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLG 120
+E LY++L+T K SNILEDLETLRL S+++PEY +L+E I + F+L+FAFDE+++LG
Sbjct: 61 MEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALG 120
Query: 121 HKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDKGG 180
++ENV +AQ++ + EM+SHEEK+ + V +++ E K M+RKA E+ +++ + R K
Sbjct: 121 YRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKK- 179
Query: 181 FMSLQSMGSGRIESSFSDMSISSGGGGFGSGSGFGLATTDVETFSSKSKGRP-----PSS 235
+ G GGFGS + G +TT + T + +P P+
Sbjct: 180 ---------------------APGFGGFGSSTVSGGSTTSMITETIIETDKPKVAPAPAR 218
Query: 236 ANAPPKGLGMQLGKSQRTNQFLESLKAEGEVILEDVKPIAGQSRAAAAAPPLT-DPITLT 294
+ P K L + K + + F++ LK+EGE I+ APP+ + + +
Sbjct: 219 PSGPSKALKLG-AKGKEVDNFVDKLKSEGENIISSNMGKRTSEATKVHAPPINMESVHMK 277
Query: 295 VEEKINVSLKRDGGMSNFDVQGTLSLQILNQEDGLIQVQIETGGNPGILFKTHPNMNKEL 354
+EEKI ++ RDGG+ N ++ G + L+I + + G I++ +E G+ +THPN++K+L
Sbjct: 278 IEEKITLTCGRDGGLQNMELHGMIMLRISDDKFGRIRLHVENEDKKGVQLQTHPNVDKKL 337
Query: 355 FTHENILGLKDPNRPFPQAK-----LWRMQSADESMVPLTINCWPSVSGNETYVSIEYE- 408
FT E+++GLK+P + FP WR+Q+ +ES +PLTINCWPS SGN V+IEYE
Sbjct: 338 FTAESLIGLKNPEKSFPVNSDVGVLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYEL 397
Query: 409 ASTMFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFV 468
+L +VVI++PLP+ AP + +IDGE+R+DSR + LEW + +ID N+SGS+EF
Sbjct: 398 QEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFS 457
Query: 469 VPPADSSSFFPISVRFSATSTYSDLKVVNIIPLRGGAPPKFSQRTVLITENYQVV 523
+ + FFP+ V F + Y +++V + + G +P +FS T + + Y+++
Sbjct: 458 I-AGQPNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
>sp|Q5ZL57|COPD_CHICK Coatomer subunit delta OS=Gallus gallus GN=ARCN1 PE=2 SV=1
Length = 510
Score = 438 bits (1126), Expect = e-122, Method: Compositional matrix adjust.
Identities = 226/535 (42%), Positives = 345/535 (64%), Gaps = 37/535 (6%)
Query: 1 MVVLAASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 60
MV+LAA++ +K+GK +VSRQFV+M+R RIEGLLAAFPKL+ TGKQHT+VETE+VRYVYQP
Sbjct: 1 MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQP 60
Query: 61 IEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLG 120
+E LY++L+T K SNILEDLETLRL S+++PEY +L+E I + F+L+FAFDE+++LG
Sbjct: 61 MEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALG 120
Query: 121 HKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDKGG 180
++ENV +AQ++ + EM+SHEEK+ + V +++ E K M+RKA E+ +++ + R K
Sbjct: 121 YRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERLGKK- 179
Query: 181 FMSLQSMGSGRIESSFSDMSISSGGGGFGSG--SGFGLATTDVETF--SSKSKGRP-PSS 235
+ G GGFGS SG A ET + K K P PS
Sbjct: 180 ---------------------APGFGGFGSSAVSGGTTAAMITETIIETEKPKVAPAPSR 218
Query: 236 ANAPPKGLGMQLGKSQRTNQFLESLKAEGEVILEDVKPIAGQSRAAAAAPPLT-DPITLT 294
+ P K L + K + + F++ LK+EGE I+ V + ++ A APP+ + + +
Sbjct: 219 PSGPSKALKLG-AKGKEVDNFVDKLKSEGENIMTSVGKRSTEA-AKVLAPPINMESVHMK 276
Query: 295 VEEKINVSLKRDGGMSNFDVQGTLSLQILNQEDGLIQVQIETGGNPGILFKTHPNMNKEL 354
+EEKI+++ RDGG+ N ++ G + L I +++ I++ +E G+ +THPN++K+L
Sbjct: 277 IEEKISLTCGRDGGLQNMELHGMIMLHISDEKFARIRLHVENEDKRGVQLQTHPNVDKKL 336
Query: 355 FTHENILGLKDPNRPFP-----QAKLWRMQSADESMVPLTINCWPSVSGNETYVSIEYE- 408
FT E+ +GLK+P + FP WR+Q+ +ES +PLTINCWPS SGN V+IEYE
Sbjct: 337 FTAESQIGLKNPEKSFPINSDVGVLKWRLQTTEESFIPLTINCWPSESGNSCDVNIEYEL 396
Query: 409 ASTMFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSGSMEFV 468
+L +VVI +PLP+ AP + +IDGE+R+DSR ++LEW + +ID N+SGS+EF
Sbjct: 397 QEESLELNDVVIMIPLPSGVGAPVIGEIDGEYRHDSRRNLLEWCLPVIDAKNKSGSLEFS 456
Query: 469 VPPADSSSFFPISVRFSATSTYSDLKVVNIIPLRGGAPPKFSQRTVLITENYQVV 523
+ + FFP+ V F + Y +++V + + G +P +FS T + + Y+++
Sbjct: 457 I-AGQPNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 510
>sp|Q0J649|COPD4_ORYSJ Coatomer subunit delta-4 OS=Oryza sativa subsp. japonica
GN=Os08g0368000 PE=2 SV=1
Length = 376
Score = 427 bits (1097), Expect = e-118, Method: Compositional matrix adjust.
Identities = 218/361 (60%), Positives = 278/361 (77%), Gaps = 13/361 (3%)
Query: 170 KIEKNRGDKGGFMSLQSMGSGRIESSFSDMSISSGGGGFGSGSGFGLATTDVETFSSKSK 229
++EK + +KGG+ S+ G IE SF+DMSIS G G GSG G TD +TF+S+ K
Sbjct: 22 QMEKGKHNKGGYSSIS--GPQVIEKSFNDMSISCTGFGSGSGLG--GLNTDTDTFTSRPK 77
Query: 230 GRPPSSANAPPKGLGMQLGKSQRTNQFLESLKAEGEVILEDVKPIAGQSRAAAAAPPLTD 289
GR KG+GM+LG +++TNQFLESLKAEGEVI+ED +P + QSR++ P +D
Sbjct: 78 GRTSGGTTGAGKGIGMKLGNTKKTNQFLESLKAEGEVIMEDFQPCSLQSRSSPLPP--SD 135
Query: 290 PITLTVEEKINVSLKRDGGMSNFDVQGTLSLQILNQEDGLIQVQIETGGNPGILFKTHPN 349
P+T+ VEEK+NV++KRDGG++NFDVQGTL+L +LN DGLI +QIE+ PG+ FKTHPN
Sbjct: 136 PVTVAVEEKLNVAVKRDGGVNNFDVQGTLALLVLNDADGLILLQIESQDIPGLSFKTHPN 195
Query: 350 MNKELFTHENILGLKDPNRPFPQAK------LWRMQSADESMVPLTINCWPSVSGNETYV 403
+NK+LF + ILG KDP RPFP + WR+Q +ES +PL++NCWPS+ GNETYV
Sbjct: 196 INKDLFNSQQILGAKDPIRPFPSGQNETPLVKWRIQGMNESSLPLSVNCWPSILGNETYV 255
Query: 404 SIEYEASTMFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSNRSG 463
+IEYEAS MFDL +V+IS+PLPALREAP VRQIDGEW+YDSRNSVLEW+I+LID SNRSG
Sbjct: 256 NIEYEASEMFDLHSVIISIPLPALREAPRVRQIDGEWKYDSRNSVLEWSIILIDQSNRSG 315
Query: 464 SMEFVVPPADSSSFFPISVRFSATSTYSDLKVVNIIPLRGGA-PPKFSQRTVLITENYQV 522
SMEFVVPPAD S F+PISV FSA++T+S++KV I PL G+ PPK+SQR L+ +NYQV
Sbjct: 316 SMEFVVPPADPSMFYPISVGFSASNTFSNVKVTGIRPLNEGSNPPKYSQRVRLVADNYQV 375
Query: 523 V 523
V
Sbjct: 376 V 376
>sp|Q09236|COPD_CAEEL Probable coatomer subunit delta OS=Caenorhabditis elegans
GN=C13B9.3 PE=3 SV=1
Length = 515
Score = 323 bits (827), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 200/545 (36%), Positives = 310/545 (56%), Gaps = 52/545 (9%)
Query: 1 MVVLAASIVSKSGKILVSRQFV-DMSRIRIEGLLAAFPKLVGTGK-----QHTYVETENV 54
MV++AA I+SK+GK+LV+RQFV DM R R+EGL+ AFPKL+G K QHT+VET++V
Sbjct: 1 MVLIAACILSKTGKLLVARQFVNDMMRSRLEGLVDAFPKLIGNEKEAATRQHTFVETDSV 60
Query: 55 RYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFD 114
RYVY P++ +YL+LVT K SNILEDLETLRL +++PEY S +E+ I F+L+FAFD
Sbjct: 61 RYVYHPLDNIYLVLVTTKNSNILEDLETLRLFVRVIPEYCRSNEEKEILAHDFDLIFAFD 120
Query: 115 EVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEK- 173
EV++LG++E+V +AQ++ + EM+SHEE++ + +++ K M KA E+ +++ E
Sbjct: 121 EVVTLGYRESVNLAQIRTFTEMDSHEERVFMQIKEAQEKAAKQAMAEKAKELKRAQKEAL 180
Query: 174 NRGDKGGFMSLQSMGSGRIESSFSDMSISSGGGGFGSGSGFGLATTDVETFSSKSKGRPP 233
+RG K + S + S +T + S + RP
Sbjct: 181 SRGLKPSYQSSTGISS--------------------------SSTPNAAAVSEPAAPRP- 213
Query: 234 SSANAPPKGLGMQLGKSQRTNQ---FLESLKAEGEVILEDVKPIAGQSRAAAAAPPLTDP 290
SA P G G L +TN FL++L+ +G+ I K ++ AAP T P
Sbjct: 214 -SAPKGPIGGGKALKLGGKTNNEDDFLDTLRQQGQSIAPVQKASLSGGVSSLAAPISTAP 272
Query: 291 ------ITLTVEEKINVSLKRDGGMSNFDVQGTLSLQILNQEDGLIQVQIETGGNPGILF 344
+ + EEKIN + RDGG+ + +VQ T++L I + E I +++ G G
Sbjct: 273 RVKREVVHVRTEEKINTRVSRDGGLESGEVQATVTLSIGSPEFIPISIKMNNGSAAGTQL 332
Query: 345 KTHPNMNKELFTHENILGLKDPNRPFPQAK-----LWRMQSADESMVPLTINCWPSVSGN 399
+ HPN++K+ + + L +K +P+P W+M ++E +P++ NCWP S +
Sbjct: 333 QVHPNLDKKEWQSSSTLKIKPNGKPYPVNSDVGILKWKMALSEEEQLPISFNCWPQESSD 392
Query: 400 ETYVSIEYEASTM-FDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDN 458
V+IEY L NV I VPLP APSV + DGE+ Y +V+ W++ +ID+
Sbjct: 393 GVQVNIEYTLQREDITLNNVRIIVPLPTAT-APSVGECDGEYEYHKTKNVIVWSLAVIDS 451
Query: 459 SNRSGSMEFVVPPADSSSFFPISVRFSATSTYSDLKVVNIIPLRGGAPPKFSQRTVLITE 518
SN SG++EF VP FFP+SV F++ + + + V ++ G+P +S T +E
Sbjct: 452 SNSSGTLEFSVPNGHCDHFFPVSVGFTSENLFVPITVQKVVK-NDGSPVTYSVETTFNSE 510
Query: 519 NYQVV 523
N+++V
Sbjct: 511 NFEIV 515
>sp|Q55EZ6|COPD_DICDI Coatomer subunit delta OS=Dictyostelium discoideum GN=copd PE=3
SV=1
Length = 540
Score = 215 bits (548), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 102/173 (58%), Positives = 139/173 (80%), Gaps = 1/173 (0%)
Query: 1 MVVLAASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 60
MVVLAA+I +K+GK L+SRQF +M++ R+EGLLAAFPKL+G G+QHT++ETEN+RYVYQP
Sbjct: 1 MVVLAAAICTKNGKALLSRQFSEMTKSRVEGLLAAFPKLIGLGRQHTFIETENIRYVYQP 60
Query: 61 IEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLG 120
+E+LY++L+TNK SNILEDLETL LL+KLVPEYS + DE I K AFEL+F FDEVI++G
Sbjct: 61 LESLYIVLITNKNSNILEDLETLHLLAKLVPEYS-NFDEYDISKNAFELIFTFDEVIAMG 119
Query: 121 HKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEK 173
+KE VT+ Q+K + MESHEE+ ++ + K E + + KA EI++ + E+
Sbjct: 120 YKERVTLQQIKHFISMESHEEERFRMEEKIKQKEAQILASSKAKEIERMRHEE 172
>sp|P43621|COPD_YEAST Coatomer subunit delta OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RET2 PE=1 SV=3
Length = 546
Score = 206 bits (524), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 140/445 (31%), Positives = 233/445 (52%), Gaps = 29/445 (6%)
Query: 1 MVVLAASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVG-TGKQHTYVETENVRYVYQ 59
MVVLAASI ++ GK L+SRQF D+S+ R+ LL+ F LV HT+VE ++VRYVY+
Sbjct: 1 MVVLAASITTRQGKPLLSRQFKDLSKDRVLELLSNFQNLVSEISSDHTFVEDKHVRYVYR 60
Query: 60 PIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISL 119
P + Y++L+TN+QSNI++DL TL L S+ + Y S ++ I AFE+L +FDE++S+
Sbjct: 61 PFDNYYIILITNRQSNIIKDLATLNLFSQTINSYLSSFQDQEIFHNAFEILSSFDEIVSM 120
Query: 120 G-HKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDK 178
G +KEN++ QV+ Y MESHEE++ +++ ++K E + KR+A EI + + E+ K
Sbjct: 121 GGYKENLSFTQVQTYLSMESHEERIQEIIERNKEIEATEERKRRAKEIARKEHER----K 176
Query: 179 GGFMSLQSM--GSGRIESSFSDMSISSGGGGFGSGSGFGLATTDVETFSSKSKGRPPSSA 236
GFMS G+ R S D ++++ + S + + ++ S +
Sbjct: 177 HGFMSSNGDYDGANRFMGS-KDPNVTNAINSYYSHASPAAQQSYLQ---SSHAAAAEVAP 232
Query: 237 NAPPKGLGMQLGKSQRTNQFLESLKAEGEVILEDVKPIA----GQSRAAAAAPPLTDPIT 292
A P + G S L I+ G P + I
Sbjct: 233 VASPMATSQRAGHSATGGMKLGGGAGRRAGAAPRPSAISSASSGTPPPPEEDVPENNGIL 292
Query: 293 LTVEEKINVSLKRDGGMSNFDVQGTLSLQILNQEDGLIQVQIETG---GNPGILFKTHPN 349
++++E IN RDG + + +++G L L+I + + +++ + FKTHPN
Sbjct: 293 ISIKEVINAEFSRDGTIHSSELKGVLELRINDHDLSHSNLKLADSIDVRDKSFQFKTHPN 352
Query: 350 MNKELFTHENILGLKDPNRPFPQAK------LWR--MQSADESMVPLTINCW--PSVSGN 399
++K+ F ++ L+D ++ FP WR + D+S++PLT+ W PS S
Sbjct: 353 IDKQSFLSTKLISLRDKSKAFPANDQSLGVLRWRKVAPAEDDSLIPLTLTTWVSPSESQQ 412
Query: 400 ETYVSIEYEASTMFDLRNVVISVPL 424
V IEYE+ +L +V+ ++P+
Sbjct: 413 GFDVIIEYESVLETELADVIFTIPV 437
>sp|O74496|COPD_SCHPO Coatomer subunit delta OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ret2 PE=3 SV=1
Length = 240
Score = 188 bits (477), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 162/257 (63%), Gaps = 23/257 (8%)
Query: 1 MVVLAASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 60
MVVLA SIV++ GK ++SRQF +MSR+R+E LL++FP LV Q+T VE++NVR+VYQP
Sbjct: 1 MVVLAVSIVNRGGKAIISRQFREMSRVRVESLLSSFPALVSEKSQNTTVESDNVRFVYQP 60
Query: 61 IEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLG 120
++ LY++L+TN QSNIL+D++TL LLS++V SL+E I + AFE+ AFDE SLG
Sbjct: 61 LDELYIVLITNLQSNILQDIDTLHLLSQVVTSICSSLEEREILEYAFEIFTAFDEATSLG 120
Query: 121 HKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDVMKRKASEIDKSKIEKNRGDKGG 180
+++NV++ Q+K Y EMESHEEK+ ++V ++K E + KR+ +++ K E R
Sbjct: 121 YRDNVSLTQIKTYLEMESHEEKIQEIVSRNKEIEATEERKRRIKQLELQKKEAARRAAQN 180
Query: 181 FMS---LQSMGSGRIESSFSDMSISSGGGGFGSGSGFGLATTDVETFSSKSKGRPPSSAN 237
S +S+G + ++F AT++VE S+ + A+
Sbjct: 181 LPSADAYESIGYQTVNTTF--------------------ATSNVEDESAMESYHAAAKAS 220
Query: 238 APPKGLGMQLGKSQRTN 254
+ PK GMQLGK + T+
Sbjct: 221 SAPKAKGMQLGKKKNTS 237
>sp|P54672|AP2M_DICDI AP-2 complex subunit mu OS=Dictyostelium discoideum GN=apm2 PE=2
SV=2
Length = 439
Score = 40.0 bits (92), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 82/163 (50%), Gaps = 20/163 (12%)
Query: 2 VVLAASIVSKSGKILVSRQFVD-MSRIRIEGLLAAFPKLVGTGKQHTYVETE---NVRYV 57
++ A +++ G++L+SR + D +SR G+ AF +L G Q T + + ++
Sbjct: 1 MISALFLMNGKGEVLISRIYRDDISR----GVANAF-RLEVIGSQETRSPVKLIGSTSFM 55
Query: 58 YQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAF-DEV 116
Y + +Y++ V+ + N E L L + Y +LDE+ I + F L++ DE+
Sbjct: 56 YIKVGNIYIVGVSRQNVNACMVFEVLHQLVDIFKSYFDNLDEDSI-RNNFVLVYELLDEI 114
Query: 117 ISLGHKENVTVAQVKQYC-----EMES----HEEKLHKLVVQS 150
+ G+ +N + +K Y +++S ++K+ K+ +Q+
Sbjct: 115 LDFGYPQNCSTDVLKLYITQGQGKLKSLDKLKQDKISKITIQA 157
>sp|Q9HFE5|AP1M1_SCHPO AP-1 complex subunit mu-1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=apm1 PE=1 SV=1
Length = 426
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 67/143 (46%), Gaps = 4/143 (2%)
Query: 5 AASIVSKSGKILVSRQF-VDMSRIRIEGLLAAFPKLVG-TGKQHTYVETENVRYVYQPIE 62
A +++ GK+++SR + D+ +E L ++ G + E + Y+Y
Sbjct: 4 AIFVLNLKGKVIISRDYRADIPMSVVEKFLPLKSEVEEEQGFSTPCLTHEGINYIYIHHN 63
Query: 63 ALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFA-FDEVISLGH 121
+YLL ++ S+ +E L LR ++ + +Y L EE I + F L++ DE++ G
Sbjct: 64 DVYLLALSKMNSDAMEMLVFLRKMADVFIDYFKELQEESI-RDNFVLVYELLDEIMDFGF 122
Query: 122 KENVTVAQVKQYCEMESHEEKLH 144
+ +++Y S+ K H
Sbjct: 123 PQTTETKILQEYITQTSNTVKKH 145
>sp|Q9BXS5|AP1M1_HUMAN AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1 PE=1 SV=3
Length = 423
Score = 36.6 bits (83), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 5 AASIVSKSGKILVSRQF---VDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPI 61
A ++ GK+L+ R + VDMS + E + + G + VR+++
Sbjct: 5 AVYVLDLKGKVLICRNYRGDVDMSEV--EHFMPILMEKEEEGMLSPILAHGGVRFMWIKH 62
Query: 62 EALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLGH 121
LYL+ + K + + L + ++ EY L+EE I + DE++ G+
Sbjct: 63 NNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGY 122
Query: 122 KENVTVAQVKQYCEMESHE 140
+ +++Y E H+
Sbjct: 123 PQTTDSKILQEYITQEGHK 141
>sp|Q2KJ81|AP1M1_BOVIN AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 PE=1 SV=3
Length = 423
Score = 36.6 bits (83), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 5 AASIVSKSGKILVSRQF---VDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPI 61
A ++ GK+L+ R + VDMS + E + + G + VR+++
Sbjct: 5 AVYVLDLKGKVLICRNYRGDVDMSEV--EHFMPILMEKEEEGMLSPILAHGGVRFMWIKH 62
Query: 62 EALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLGH 121
LYL+ + K + + L + ++ EY L+EE I + DE++ G+
Sbjct: 63 NNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGY 122
Query: 122 KENVTVAQVKQYCEMESHE 140
+ +++Y E H+
Sbjct: 123 PQTTDSKILQEYITQEGHK 141
>sp|P35585|AP1M1_MOUSE AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1 PE=1 SV=3
Length = 423
Score = 36.6 bits (83), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 5 AASIVSKSGKILVSRQF---VDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPI 61
A ++ GK+L+ R + VDMS + E + + G + VR+++
Sbjct: 5 AVYVLDLKGKVLICRNYRGDVDMSEV--EHFMPILMEKEEEGMLSPILAHGGVRFMWIKH 62
Query: 62 EALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLGH 121
LYL+ + K + + L + ++ EY L+EE I + DE++ G+
Sbjct: 63 NNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGY 122
Query: 122 KENVTVAQVKQYCEMESHE 140
+ +++Y E H+
Sbjct: 123 PQTTDSKILQEYITQEGHK 141
>sp|Q32Q06|AP1M1_RAT AP-1 complex subunit mu-1 OS=Rattus norvegicus GN=Ap1m1 PE=1 SV=3
Length = 423
Score = 36.6 bits (83), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 5 AASIVSKSGKILVSRQF---VDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPI 61
A ++ GK+L+ R + VDMS + E + + G + VR+++
Sbjct: 5 AVYVLDLKGKVLICRNYRGDVDMSEV--EHFMPILMEKEEEGMLSPILAHGGVRFMWIKH 62
Query: 62 EALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLGH 121
LYL+ + K + + L + ++ EY L+EE I + DE++ G+
Sbjct: 63 NNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGY 122
Query: 122 KENVTVAQVKQYCEMESHE 140
+ +++Y E H+
Sbjct: 123 PQTTDSKILQEYITQEGHK 141
>sp|P29993|ITPR_DROME Inositol 1,4,5-trisphosphate receptor OS=Drosophila melanogaster
GN=Itp-r83A PE=2 SV=3
Length = 2838
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 10/132 (7%)
Query: 115 EVISLGHKENVTVAQVKQYCEMESHEEKLHKLV-VQSKINETKDVMKRKASEIDKSKIEK 173
+V+ L H E +++ M+ ++++ H + + + T + EI+ + +
Sbjct: 245 DVVRLFHAEQ------EKFLTMDEYKKQYHVFLRTTGRTSATAATSSKALWEIEVVQHDS 298
Query: 174 NRGDKGGFMSL---QSMGSGRIESSFSDMSISSGGGGFGSGSGFGLATTDVETFSSKSKG 230
RG G + SL + + +G ++ +++ +S+G S SG L D S S
Sbjct: 299 CRGGAGDWNSLYRFKHLATGHYLAAEAEIDVSAGAMSATSASGHDLHLGDCSKDSGLSCS 358
Query: 231 RPPSSANAPPKG 242
S+ N PKG
Sbjct: 359 TMNSTINDKPKG 370
>sp|Q54HS9|AP1M_DICDI AP-1 complex subunit mu OS=Dictyostelium discoideum GN=apm1 PE=1
SV=1
Length = 428
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 20/150 (13%)
Query: 1 MVVLAASIVSKSGKILVSRQF---VDMS-------RIRIEGLLAAFPKLVGTGKQHTYVE 50
M A ++ GK+L+SR + V MS +I E L P + G + YV+
Sbjct: 1 MAASAIFLMDSKGKVLISRNYRGDVPMSVASKFISKILEEEDLNLKPIIQEDGISYIYVK 60
Query: 51 TENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELL 110
N L+LL T + +N L L + ++ EY L+EE I +
Sbjct: 61 HNN----------LFLLATTERNANAATILLFLYKMIEVFNEYFKELEEESIRDNFVVIY 110
Query: 111 FAFDEVISLGHKENVTVAQVKQYCEMESHE 140
DE++ G+ ++ +++Y E ++
Sbjct: 111 ELMDEMMDFGYPQSTEPKILQEYITQEGYK 140
>sp|Q9DB50|AP1S2_MOUSE AP-1 complex subunit sigma-2 OS=Mus musculus GN=Ap1s2 PE=2 SV=1
Length = 160
Score = 33.5 bits (75), Expect = 3.7, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 8 IVSKSGKILVSRQFVDMS--------RIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQ 59
+ S+ GK+ + + +V +S R ++ +LA PK+ +++E +++ VY+
Sbjct: 6 LFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMC------SFLEWRDLKIVYK 59
Query: 60 PIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISL 119
+LY Q N L LE + +L+ +Y S+ E I + F DE +
Sbjct: 60 RYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLG 119
Query: 120 GHKENVTVAQVKQYCE 135
G + + V + E
Sbjct: 120 GEVQETSKKNVLKAIE 135
>sp|P56377|AP1S2_HUMAN AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP1S2 PE=1 SV=1
Length = 157
Score = 33.5 bits (75), Expect = 3.7, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 8 IVSKSGKILVSRQFVDMS--------RIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQ 59
+ S+ GK+ + + +V +S R ++ +LA PK+ +++E +++ VY+
Sbjct: 6 LFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMC------SFLEWRDLKIVYK 59
Query: 60 PIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISL 119
+LY Q N L LE + +L+ +Y S+ E I + F DE +
Sbjct: 60 RYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLG 119
Query: 120 GHKENVTVAQVKQYCE 135
G + + V + E
Sbjct: 120 GEVQETSKKNVLKAIE 135
>sp|Q3ZBS3|AP1S2_BOVIN AP-1 complex subunit sigma-2 OS=Bos taurus GN=AP1S2 PE=2 SV=1
Length = 160
Score = 33.5 bits (75), Expect = 3.7, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 8 IVSKSGKILVSRQFVDMS--------RIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQ 59
+ S+ GK+ + + +V +S R ++ +LA PK+ +++E +++ VY+
Sbjct: 6 LFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMC------SFLEWRDLKIVYK 59
Query: 60 PIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISL 119
+LY Q N L LE + +L+ +Y S+ E I + F DE +
Sbjct: 60 RYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLG 119
Query: 120 GHKENVTVAQVKQYCE 135
G + + V + E
Sbjct: 120 GEVQETSKKNVLKAIE 135
>sp|Q09718|AP2M_SCHPO AP-2 complex subunit mu OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=apm4 PE=1 SV=1
Length = 446
Score = 33.5 bits (75), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 8 IVSKSGKILVSRQFV-DMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALYL 66
I + G L+ + F D+ + E A L T +H V + Y+Y E LY+
Sbjct: 7 IFNLKGDTLICKTFRHDLKKSVTEIFRVAI--LTNTDYRHPIVSIGSSTYIYTKHEDLYV 64
Query: 67 LLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTA---FELLFAFDEVISLG 120
+ +T N++ LE L L + + Y L+E + FELL DE+I G
Sbjct: 65 VAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKDNVSFIFELL---DEMIDYG 118
>sp|P62744|AP2S1_RAT AP-2 complex subunit sigma OS=Rattus norvegicus GN=Ap2s1 PE=2 SV=1
Length = 142
Score = 33.1 bits (74), Expect = 5.6, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 60/136 (44%), Gaps = 3/136 (2%)
Query: 8 IVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGT--GKQHTYVETENVRYVYQPIEALY 65
I +++GK +++ ++ + L+ +V K +VE N + +Y+ LY
Sbjct: 7 IQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLY 66
Query: 66 LLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLGH-KEN 124
+ + N L LE + +++ EY +++ E + +++ DE+ G +E
Sbjct: 67 FCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRET 126
Query: 125 VTVAQVKQYCEMESHE 140
+KQ ++S E
Sbjct: 127 SQTKVLKQLLMLQSLE 142
>sp|Q5R940|AP2S1_PONAB AP-2 complex subunit sigma OS=Pongo abelii GN=AP2S1 PE=2 SV=1
Length = 142
Score = 33.1 bits (74), Expect = 5.6, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 60/136 (44%), Gaps = 3/136 (2%)
Query: 8 IVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGT--GKQHTYVETENVRYVYQPIEALY 65
I +++GK +++ ++ + L+ +V K +VE N + +Y+ LY
Sbjct: 7 IQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLY 66
Query: 66 LLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLGH-KEN 124
+ + N L LE + +++ EY +++ E + +++ DE+ G +E
Sbjct: 67 FCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRET 126
Query: 125 VTVAQVKQYCEMESHE 140
+KQ ++S E
Sbjct: 127 SQTKVLKQLLMLQSLE 142
>sp|P62743|AP2S1_MOUSE AP-2 complex subunit sigma OS=Mus musculus GN=Ap2s1 PE=1 SV=1
Length = 142
Score = 33.1 bits (74), Expect = 5.6, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 60/136 (44%), Gaps = 3/136 (2%)
Query: 8 IVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGT--GKQHTYVETENVRYVYQPIEALY 65
I +++GK +++ ++ + L+ +V K +VE N + +Y+ LY
Sbjct: 7 IQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLY 66
Query: 66 LLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLGH-KEN 124
+ + N L LE + +++ EY +++ E + +++ DE+ G +E
Sbjct: 67 FCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRET 126
Query: 125 VTVAQVKQYCEMESHE 140
+KQ ++S E
Sbjct: 127 SQTKVLKQLLMLQSLE 142
>sp|P53680|AP2S1_HUMAN AP-2 complex subunit sigma OS=Homo sapiens GN=AP2S1 PE=1 SV=2
Length = 142
Score = 33.1 bits (74), Expect = 5.6, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 60/136 (44%), Gaps = 3/136 (2%)
Query: 8 IVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGT--GKQHTYVETENVRYVYQPIEALY 65
I +++GK +++ ++ + L+ +V K +VE N + +Y+ LY
Sbjct: 7 IQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLY 66
Query: 66 LLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLGH-KEN 124
+ + N L LE + +++ EY +++ E + +++ DE+ G +E
Sbjct: 67 FCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRET 126
Query: 125 VTVAQVKQYCEMESHE 140
+KQ ++S E
Sbjct: 127 SQTKVLKQLLMLQSLE 142
>sp|Q17QC5|AP2S1_BOVIN AP-2 complex subunit sigma OS=Bos taurus GN=AP2S1 PE=2 SV=1
Length = 142
Score = 33.1 bits (74), Expect = 5.6, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 60/136 (44%), Gaps = 3/136 (2%)
Query: 8 IVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGT--GKQHTYVETENVRYVYQPIEALY 65
I +++GK +++ ++ + L+ +V K +VE N + +Y+ LY
Sbjct: 7 IQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLY 66
Query: 66 LLLVTNKQSNILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLGH-KEN 124
+ + N L LE + +++ EY +++ E + +++ DE+ G +E
Sbjct: 67 FCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRET 126
Query: 125 VTVAQVKQYCEMESHE 140
+KQ ++S E
Sbjct: 127 SQTKVLKQLLMLQSLE 142
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 187,690,886
Number of Sequences: 539616
Number of extensions: 8160482
Number of successful extensions: 24314
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 23955
Number of HSP's gapped (non-prelim): 306
length of query: 523
length of database: 191,569,459
effective HSP length: 122
effective length of query: 401
effective length of database: 125,736,307
effective search space: 50420259107
effective search space used: 50420259107
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)