Query 042402
Match_columns 523
No_of_seqs 148 out of 848
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 09:52:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042402.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042402hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_M AP-2 complex subunit MU 100.0 8.6E-79 2.9E-83 649.2 45.9 396 3-522 2-433 (435)
2 1w63_M Adaptor-related protein 100.0 1.3E-79 4.3E-84 653.4 34.3 394 1-522 1-420 (423)
3 1i31_A Clathrin coat assembly 100.0 2.5E-53 8.7E-58 433.9 29.5 235 285-522 46-312 (314)
4 4en2_M AP-1 complex subunit MU 100.0 2.7E-53 9.3E-58 423.5 26.8 235 285-522 8-263 (266)
5 3ml6_A Chimeric complex betwee 100.0 4.5E-52 1.5E-56 434.2 30.2 235 285-522 117-383 (385)
6 3l81_A AP-4 complex subunit MU 100.0 9.2E-51 3.2E-55 411.5 26.3 235 285-522 29-299 (301)
7 1w63_Q Adapter-related protein 100.0 5.9E-30 2E-34 236.0 17.5 137 3-139 2-140 (158)
8 2vgl_S AP-2 complex subunit si 100.0 2.6E-29 8.8E-34 227.8 16.4 135 3-137 2-139 (142)
9 3tjz_C Coatomer subunit zeta-1 99.9 4E-26 1.4E-30 208.8 16.6 130 2-138 12-150 (153)
10 3g9h_A Suppressor of yeast pro 98.9 3.2E-07 1.1E-11 92.2 25.2 222 290-521 69-325 (328)
11 4b93_A Vesicle-associated memb 92.9 0.8 2.7E-05 42.4 11.2 91 1-95 2-92 (189)
12 3kyq_A YKT6, synaptobrevin hom 92.7 1.2 4E-05 41.7 12.1 95 1-95 2-107 (199)
13 3bw6_A Synaptobrevin homolog Y 92.0 1.5 5.2E-05 38.7 11.4 95 1-95 5-110 (144)
14 2nut_C Vesicle-trafficking pro 91.6 2.4 8.3E-05 39.2 12.9 95 1-95 2-101 (196)
15 4afi_A AP-3 complex subunit de 90.1 3 0.0001 38.0 11.7 91 1-95 54-144 (173)
16 2vx8_A Nucleoporin-like protei 89.4 2.5 8.5E-05 38.4 10.4 49 48-96 87-135 (169)
17 2j3w_A Sedlin, trafficking pro 87.7 3.3 0.00011 36.3 9.9 92 1-93 3-111 (142)
18 3cpt_A Mitogen-activated prote 86.4 5.7 0.00019 34.9 10.3 91 3-93 38-136 (143)
19 2j3t_C Trafficking protein par 84.0 4.7 0.00016 35.5 8.9 91 1-93 1-108 (145)
20 3cue_A Transport protein parti 79.8 14 0.00048 34.8 10.9 22 1-22 1-22 (219)
21 3cue_C Transport protein parti 76.5 7.3 0.00025 34.9 7.7 91 1-93 1-114 (159)
22 1nrj_A Signal recognition part 48.3 19 0.00066 31.5 4.4 66 5-72 4-93 (158)
23 2fh5_A Signal recognition part 48.2 86 0.0029 28.6 9.1 86 5-94 13-103 (185)
24 1vet_B P14, late endosomal/lys 43.5 1.5E+02 0.005 25.0 12.7 90 3-92 19-117 (125)
25 2j3t_D Trafficking protein par 27.9 39 0.0013 31.8 3.4 23 1-23 1-23 (219)
26 1ypr_A Profilin; actin-binding 26.1 2.9E+02 0.0098 23.1 9.9 87 3-92 15-122 (125)
27 1j3w_A Giding PROTEIN-MGLB; gl 23.9 3.7E+02 0.013 23.6 10.4 92 4-95 30-134 (163)
28 1acf_A Profilin I; protein bin 23.5 3.2E+02 0.011 22.7 8.2 86 3-91 16-121 (125)
29 3leq_A Uncharacterized protein 23.5 3.2E+02 0.011 22.7 9.7 92 3-94 19-120 (126)
30 2k8q_A Protein SHQ1; beta-sand 21.0 2.1E+02 0.0073 24.6 6.5 36 421-460 50-85 (134)
No 1
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=100.00 E-value=8.6e-79 Score=649.20 Aligned_cols=396 Identities=16% Similarity=0.203 Sum_probs=331.0
Q ss_pred EEEEEEEcCCCCEEEEEcce-ecchHHHHHHHhhhchhhcCC---CCCcEEEeCCEEEEEEEcCCEEEEEEEcCCCCHHH
Q 042402 3 VLAASIVSKSGKILVSRQFV-DMSRIRIEGLLAAFPKLVGTG---KQHTYVETENVRYVYQPIEALYLLLVTNKQSNILE 78 (523)
Q Consensus 3 v~s~~Il~~~G~~lisR~yr-~~~r~~~e~~l~~F~~~i~~~---~~~p~i~~~~~~yvy~~~~~ly~v~~t~~n~n~~~ 78 (523)
|.+++|+|++|+++++|+|+ +++|..++. |++++... .++|++++++++|+|+++++|||+++++.|+|++.
T Consensus 2 I~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~----f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~ 77 (435)
T 2vgl_M 2 IGGLFIYNHKGEVLISRVYRDDIGRNAVDA----FRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAM 77 (435)
T ss_dssp CCEEEEECTTCCEEEEEECSSSCCHHHHHH----HHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHH
T ss_pred eEEEEEECCCCCEEEEEecCCCCChhHHHH----HHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH
Confidence 58999999999999999999 788877666 88888762 67899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHhhHHHHHHhHHhHHhCCeecccCHHHHHHHhhccchHHHHHHHHhhhcchhhhHH
Q 042402 79 DLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINETKDV 158 (523)
Q Consensus 79 ~le~L~~l~~il~~y~g~l~E~~I~~niyel~~~lDEiid~G~pq~t~~~~lk~~i~m~s~ee~i~~~~~~~ke~eak~~ 158 (523)
++||||+|+++|++|||.++|++|++|+..++++||||+|+||||+|++++|+.++.|++|+++++.
T Consensus 78 ~le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~------------- 144 (435)
T 2vgl_M 78 VFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQT------------- 144 (435)
T ss_dssp HHHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhccccccccccc-------------
Confidence 9999999999999999999999999995555555999999999999999999999999999876420
Q ss_pred HHhhhhhhhhhhhhhccCCCCCccccccCCCCccccccccccccCCCCCCCCCCCcccccccccccccCCCCCCCCCCCC
Q 042402 159 MKRKASEIDKSKIEKNRGDKGGFMSLQSMGSGRIESSFSDMSISSGGGGFGSGSGFGLATTDVETFSSKSKGRPPSSANA 238 (523)
Q Consensus 159 ~k~~a~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~s~~~~~~~~p~~~~~~ 238 (523)
++ . .... + ++ + .. ..
T Consensus 145 -----~~--~----~~~~------~----------------------~~---------~------------~~-----~i 159 (435)
T 2vgl_M 145 -----KE--E----QSQI------T----------------------SQ---------V------------TG-----QI 159 (435)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -----cc--c----cccc------c----------------------cc---------c------------cc-----cc
Confidence 00 0 0000 0 00 0 00 23
Q ss_pred CCCCcCccccccCCchhhhhhhhhccceeecccCccccccccccCCCCCCCCeEEEEEEEEEEEEecCCCeEEEEEEEEE
Q 042402 239 PPKGLGMQLGKSQRTNQFLESLKAEGEVILEDVKPIAGQSRAAAAAPPLTDPITLTVEEKINVSLKRDGGMSNFDVQGTL 318 (523)
Q Consensus 239 ~~~~~gm~lgk~~~~n~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~neI~vdV~Ekv~~~~~~~G~v~~~eV~G~i 318 (523)
|||..|+ .+.+|||||||+|+|+++++++|.+++++|+|+|
T Consensus 160 ~wr~~gi---------------------------------------~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I 200 (435)
T 2vgl_M 160 GWRREGI---------------------------------------KYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRV 200 (435)
T ss_dssp CSSCSCC---------------------------------------CCSSCEEEEEEEEEEEEEECTTCCEEEEEEEEEE
T ss_pred ccccccC---------------------------------------CcCcceEEEEEEEEEEEEEcCCCCEEEEEEEEEE
Confidence 6887776 3455799999999999999999999999999999
Q ss_pred EEEEecCCCceEEEEeeCCC--------------------CCCCCcccccccCcccccccceEEEeCCCCCccccccccc
Q 042402 319 SLQILNQEDGLIQVQIETGG--------------------NPGILFKTHPNMNKELFTHENILGLKDPNRPFPQAKLWRM 378 (523)
Q Consensus 319 ~~~~~lsg~p~~~l~ln~~~--------------------~~~~d~~fHpcVd~~~f~~~r~Isf~pPdg~F~L~~~yr~ 378 (523)
+|+++|+|||+|+|+||++. ...+||+||||||+++|+++|+|+|+||||+|+|| +||+
T Consensus 201 ~~~~~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~fH~cV~~~~f~~~r~isF~PPdg~F~Lm-~Yr~ 279 (435)
T 2vgl_M 201 VMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELM-RYRT 279 (435)
T ss_dssp EEEEECSSCCEEEEEECSSSCC-----------------CCCCCEEEECTTEEEC-----CCEEECCCSEEEEEE-EEEE
T ss_pred EEEEEeCCCCeEEEEeCchhhcccccccccccccccccCceEccccccceeecHhHhccCceEEEECCCCcEEEE-EEEe
Confidence 99999999999999998740 12379999999999999999999999999999999 8999
Q ss_pred cCCCCCcCCeEEEEEEEeeCC---eEEEEEEEEecCCceeeeEEEEecCCCCCCCCeEEeecceEEEECCCCEEEEEEce
Q 042402 379 QSADESMVPLTINCWPSVSGN---ETYVSIEYEASTMFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILL 455 (523)
Q Consensus 379 ~~~d~~~lP~~i~~~~~~~~~---~~~v~i~~~~~~~~~~~~V~V~iPlP~~~~~~~~~~~~G~~~~~~~~~~l~W~I~~ 455 (523)
+. +..+||++.||+++.++ ++.++++.+++....++||.|+||+|+.+..+.+.+..|+++|++.++.|+|+|++
T Consensus 280 ~~--~~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~V~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~~ 357 (435)
T 2vgl_M 280 TK--DIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKR 357 (435)
T ss_dssp CS--SCCCSEEEEEEEECCTTTEEEEEEEEEECSCTTSEEEEEEEEEECCSSCCCEEEEESSSEEEEETTTTEEEEEEEE
T ss_pred cC--CcCCCeEEEEEEEecCCCEEEEEEEEeCCCCCCceeeEEEEEEECCCCCCCceEEecceeEEEccCCCEEEEEecc
Confidence 87 57899999999998653 45555555666667899999999999988899999999999999999999999999
Q ss_pred ecC-CCceEEEEEEeCC---CCCCCCCCeEEEEEecccccCceEeEEEECCC----CCCCee-eEEEEEEeeceEE
Q 042402 456 IDN-SNRSGSMEFVVPP---ADSSSFFPISVRFSATSTYSDLKVVNIIPLRG----GAPPKF-SQRTVLITENYQV 522 (523)
Q Consensus 456 i~~-~~~s~s~ef~~~~---~~~~~~~Pi~v~F~ip~t~Sgl~V~~l~i~~~----~~~i~~-~~~~~~~~~~y~i 522 (523)
++| ++.+++++|.++. ...+.++||+|+|++|.++|||+|++|++.+. ...-+| ++++..++++|+|
T Consensus 358 ~~~~~~~~l~~~~~l~~~~~~~~~~~~pi~v~F~i~~t~Sgl~V~~l~v~~~~~~~~~y~~~kwVrY~t~sg~y~~ 433 (435)
T 2vgl_M 358 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYET 433 (435)
T ss_dssp EETTCEEEEEEEEECCCCSCSCCCCCCCEEEEEEESSCTTCCCEEEEEEECSSSSCBGGGSEEEEEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEecCCCcCcccCCCcEEEEEEEEecccccEEEEEEEeccccccCCCCCcCceEEEEeCCeEEE
Confidence 998 5566777777643 34567999999999999999999999999885 122244 5899999999997
No 2
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=1.3e-79 Score=653.44 Aligned_cols=394 Identities=18% Similarity=0.270 Sum_probs=331.4
Q ss_pred CeEEEEEEEcCCCCEEEEEcce-ecchHHHHHHHhhhchhhcC----CCCCcEEEeCCEEEEEEEcCCEEEEEEEcCCCC
Q 042402 1 MVVLAASIVSKSGKILVSRQFV-DMSRIRIEGLLAAFPKLVGT----GKQHTYVETENVRYVYQPIEALYLLLVTNKQSN 75 (523)
Q Consensus 1 m~v~s~~Il~~~G~~lisR~yr-~~~r~~~e~~l~~F~~~i~~----~~~~p~i~~~~~~yvy~~~~~ly~v~~t~~n~n 75 (523)
|+|.+++|+|++|+++++|+|+ +++|..++. |++++.. +.+||+++.++++|+|+++++|||+++++.|+|
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~----f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n 76 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEH----FMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNAC 76 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTHHH----HHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCC
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHHHH----HHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCC
Confidence 7899999999999999999999 788766555 8888764 468999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCChhhHHhhHHHHHHhHHhHHhCCeecccCHHHHHHHhhccchHHHHHHHHhhhcchhh
Q 042402 76 ILEDLETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVVQSKINET 155 (523)
Q Consensus 76 ~~~~le~L~~l~~il~~y~g~l~E~~I~~niyel~~~lDEiid~G~pq~t~~~~lk~~i~m~s~ee~i~~~~~~~ke~ea 155 (523)
++.++||||+|+++|++|||.++|++|++|+..++++||||+|+||||+|++++|+++|.|++|+-. + +
T Consensus 77 ~l~~le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~----------~-~ 145 (423)
T 1w63_M 77 VSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEGHKLE----------T-G 145 (423)
T ss_dssp THHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCCCCCC----------C-C
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCCcccc----------c-c
Confidence 9999999999999999999999999999995555555999999999999999999999999998610 0 0
Q ss_pred hHHHHhhhhhhhhhhhhhccCCCCCccccccCCCCccccccccccccCCCCCCCCCCCcccccccccccccCCCCCCCCC
Q 042402 156 KDVMKRKASEIDKSKIEKNRGDKGGFMSLQSMGSGRIESSFSDMSISSGGGGFGSGSGFGLATTDVETFSSKSKGRPPSS 235 (523)
Q Consensus 156 k~~~k~~a~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~s~~~~~~~~p~~~ 235 (523)
.. .. + ++ + ..
T Consensus 146 --------~~---------~~------~----------------------~~---------~------------~~---- 155 (423)
T 1w63_M 146 --------AP---------RP------P----------------------AT---------V------------TN---- 155 (423)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------cc---------CC------c----------------------cc---------c------------cC----
Confidence 00 00 0 00 0 00
Q ss_pred CCCCCCCcCccccccCCchhhhhhhhhccceeecccCccccccccccCCCCCCCCeEEEEEEEEEEEEecCCCeEEEEEE
Q 042402 236 ANAPPKGLGMQLGKSQRTNQFLESLKAEGEVILEDVKPIAGQSRAAAAAPPLTDPITLTVEEKINVSLKRDGGMSNFDVQ 315 (523)
Q Consensus 236 ~~~~~~~~gm~lgk~~~~n~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~neI~vdV~Ekv~~~~~~~G~v~~~eV~ 315 (523)
..|||+.|+ ++.+|||||||+|+|+++++++|.+++++|+
T Consensus 156 -~i~wr~~g~---------------------------------------~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~ 195 (423)
T 1w63_M 156 -AVSWRSEGI---------------------------------------KYRKNEVFLDVIEAVNLLVSANGNVLRSEIV 195 (423)
T ss_dssp --CCSSCSSC---------------------------------------CCSSCEEEEEEEEEEEEEEETTTEEEEEEEE
T ss_pred -CCCccccCC---------------------------------------ccccceEEEEEEEEEEEEECCCCCEEEEEEE
Confidence 126887676 3556799999999999999999999999999
Q ss_pred EEEEEEEecCCCceEEEEeeCCC---------C---CCCCcccccccCcccccccceEEEeCCCCCccccccccccCCCC
Q 042402 316 GTLSLQILNQEDGLIQVQIETGG---------N---PGILFKTHPNMNKELFTHENILGLKDPNRPFPQAKLWRMQSADE 383 (523)
Q Consensus 316 G~i~~~~~lsg~p~~~l~ln~~~---------~---~~~d~~fHpcVd~~~f~~~r~Isf~pPdg~F~L~~~yr~~~~d~ 383 (523)
|+|+|+++|+|+|+|+|+||++. . ..+||+||||||+++|+++|+|+|+||||+|+|| +||++. .
T Consensus 196 G~I~~~~~LsG~P~~~l~Ln~~~~~~~~~~~~~~~v~l~d~~fHpcV~~~~f~~~r~isf~PPdg~F~Lm-~Yr~~~--~ 272 (423)
T 1w63_M 196 GSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELM-SYRLNT--H 272 (423)
T ss_dssp EEEEEEEECSSCCEEEEEECSCC-------------CEEEEEECTTEEESSSSSCCEEEECCCSEEEEEE-EEEEEC--C
T ss_pred EEEEEEEEeCCCCeEEEEECCccccccccccccCceEcccccccccccHHHhCCCCeEEEECCCCcEEEE-EEEecC--C
Confidence 99999999999999999999863 1 2379999999999999999999999999999999 899987 4
Q ss_pred CcCCeEEEEEEEeeCC---eEEEEEEEEecCCceeeeEEEEecCCCCCCCCeEEeecceEEEECCCCEEEEEEceecC-C
Q 042402 384 SMVPLTINCWPSVSGN---ETYVSIEYEASTMFDLRNVVISVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDN-S 459 (523)
Q Consensus 384 ~~lP~~i~~~~~~~~~---~~~v~i~~~~~~~~~~~~V~V~iPlP~~~~~~~~~~~~G~~~~~~~~~~l~W~I~~i~~-~ 459 (523)
..+||+++||++..++ ++.++++.+++....++||.|+||+|+.+..+++.+..|+++|++.++.|+|+|++++| .
T Consensus 273 ~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~V~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~~i~~~~ 352 (423)
T 1w63_M 273 VKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGK 352 (423)
T ss_dssp CCCTTCCEEEEEEETTTEEEEEEEEECCSCTTSEEESCEEEEECCTTCCCCEEEESSSEEEEETGGGEEEEECSEEETTC
T ss_pred cCCCEEEEEEEEecCCCEEEEEEEEcccCCCcceeeEEEEEEeCCCCcccceEEecCccEEEecCCCEEEEEeCcCCCCC
Confidence 6799999999997653 34444455666667899999999999988899999999999999999999999999998 5
Q ss_pred CceEEEEEEeCCC---CCCCCCCeEEEEEecc-cccCceEeEEEECCCCCCCee-eEEEEEEeeceEE
Q 042402 460 NRSGSMEFVVPPA---DSSSFFPISVRFSATS-TYSDLKVVNIIPLRGGAPPKF-SQRTVLITENYQV 522 (523)
Q Consensus 460 ~~s~s~ef~~~~~---~~~~~~Pi~v~F~ip~-t~Sgl~V~~l~i~~~~~~i~~-~~~~~~~~~~y~i 522 (523)
+.+++++|.++.. ..+.++||+|+|++|+ ++|||+|++|++.+....-+| +.++..++++|+|
T Consensus 353 ~~~l~~~~~l~~~~~~~~~~~~pi~v~F~i~~~t~Sgl~V~~l~v~~~~~y~~~kwVrY~t~sg~y~~ 420 (423)
T 1w63_M 353 EYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQAIPWVRYITQNGDYQL 420 (423)
T ss_dssp EEEEEEEEEC----------CCCEEEEBCCSSCCTTCCCEEEEEEECSSCCCCEEEEEEEEEBSCEEE
T ss_pred cEEEEEEEEccCCCcccccCCCcEEEEEEECCEeCCCCEEEEEEeEccCCCCCcCceEEEEeCCcEEE
Confidence 5677888877532 4577999999999998 999999999999984222233 5799999999997
No 3
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=100.00 E-value=2.5e-53 Score=433.87 Aligned_cols=235 Identities=16% Similarity=0.181 Sum_probs=201.5
Q ss_pred CCCCCCeEEEEEEEEEEEEecCCCeEEEEEEEEEEEEEecCCCceEEEEeeCCC--------------------CCCCCc
Q 042402 285 PPLTDPITLTVEEKINVSLKRDGGMSNFDVQGTLSLQILNQEDGLIQVQIETGG--------------------NPGILF 344 (523)
Q Consensus 285 ~~~~neI~vdV~Ekv~~~~~~~G~v~~~eV~G~i~~~~~lsg~p~~~l~ln~~~--------------------~~~~d~ 344 (523)
.|.+|||||||+|+|+++++++|.+++++|+|+|+|+++|+|||+|+|+||++. ...+||
T Consensus 46 ~y~~NEi~vdV~E~v~~~i~~~G~v~~~eV~G~I~~~~~LsG~P~l~l~Ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~ 125 (314)
T 1i31_A 46 KYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDC 125 (314)
T ss_dssp CCSSCEEEEEEEEEEEEEECSSCCEEEEEEEEEEEEEEECSSSCEEEEEESCCC-----------------CCCCCCSEE
T ss_pred ccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEcCCCCeEEEEECCchhccccccccccccccccCCceEcccc
Confidence 355679999999999999999999999999999999999999999999998751 123799
Q ss_pred ccccccCcccccccceEEEeCCCCCccccccccccCCCCCcCCeEEEEEEEeeCC---eEEEEEEEEecCCceeeeEEEE
Q 042402 345 KTHPNMNKELFTHENILGLKDPNRPFPQAKLWRMQSADESMVPLTINCWPSVSGN---ETYVSIEYEASTMFDLRNVVIS 421 (523)
Q Consensus 345 ~fHpcVd~~~f~~~r~Isf~pPdg~F~L~~~yr~~~~d~~~lP~~i~~~~~~~~~---~~~v~i~~~~~~~~~~~~V~V~ 421 (523)
+||||||+++|+++|+|+|+||||+|+|| +||++. +..+||++.||+++.++ ++.++++.+++....++||.|+
T Consensus 126 ~FHpcV~l~~f~~~r~IsFiPPDG~F~Lm-~Yr~~~--~~~lP~~v~~~~~~~g~~~iE~~l~~~~~~~~~~~~~nV~I~ 202 (314)
T 1i31_A 126 TFHQCVRLSKFDSERSISFIPPDGEFELM-RYRTTK--DIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVR 202 (314)
T ss_dssp EECTTSBCC----CCCEEECCCSEEEEEE-EEEECS--SCCCCEEEEEEEEEETTTEEEEEEEEEECSCTTCEEEEEEEE
T ss_pred cccccccHHHcCCcceEEEECCCCCeEEE-EEEecC--CcCCCEEEEEEEEecCCcEEEEEEEEccCCCCcceeeEEEEE
Confidence 99999999999999999999999999999 899987 57899999999998764 5566666677777789999999
Q ss_pred ecCCCCCCCCeEEeecceEEEECCCCEEEEEEceecC-CCceEEEEEEeCC---CCCCCCCCeEEEEEecccccCceEeE
Q 042402 422 VPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDN-SNRSGSMEFVVPP---ADSSSFFPISVRFSATSTYSDLKVVN 497 (523)
Q Consensus 422 iPlP~~~~~~~~~~~~G~~~~~~~~~~l~W~I~~i~~-~~~s~s~ef~~~~---~~~~~~~Pi~v~F~ip~t~Sgl~V~~ 497 (523)
||+|+.+..+.+.+..|+++|++.+++|+|+|++++| .+.+++++|.+.. ...+.++||+|+|++|.++|||+|++
T Consensus 203 IP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~~i~g~~e~~l~~~~~l~s~~~~~~~~~~pi~v~F~ip~t~Sgl~V~~ 282 (314)
T 1i31_A 203 IPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRY 282 (314)
T ss_dssp EECCTTEEEEEEECSSSEEEEEGGGTEEEEEEEEEESSEEEEEEEEEEECCCCSSSCCCCCCEEEEEEESSCTTCCCEEE
T ss_pred EECCCCcccceEEecCceEEEecCCCEEEEEeCcCCCCCcEEEEEEEEecCCCcCCccCCCcEEEEEEEeecccCcEEEE
Confidence 9999988889999999999999999999999999998 4556666666643 34567999999999999999999999
Q ss_pred EEECCC----CCCCee-eEEEEEEeeceEE
Q 042402 498 IIPLRG----GAPPKF-SQRTVLITENYQV 522 (523)
Q Consensus 498 l~i~~~----~~~i~~-~~~~~~~~~~y~i 522 (523)
|++.+. ...-+| ++++..++++|+|
T Consensus 283 l~v~e~~~~~~~y~~~kwVrYit~sg~y~~ 312 (314)
T 1i31_A 283 LKVFEPKLNYSDHDVIKWVRYIGRSGIYET 312 (314)
T ss_dssp EEEECSSSSCCGGGCEEEEEEEEEEEEEEE
T ss_pred EEEeccccccCCCCccCceEEEEeCCeEEE
Confidence 999885 122234 5899999999997
No 4
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=100.00 E-value=2.7e-53 Score=423.48 Aligned_cols=235 Identities=17% Similarity=0.236 Sum_probs=203.8
Q ss_pred CCCCCCeEEEEEEEEEEEEecCCCeEEEEEEEEEEEEEecCCCceEEEEeeCCC------------CCCCCcccccccCc
Q 042402 285 PPLTDPITLTVEEKINVSLKRDGGMSNFDVQGTLSLQILNQEDGLIQVQIETGG------------NPGILFKTHPNMNK 352 (523)
Q Consensus 285 ~~~~neI~vdV~Ekv~~~~~~~G~v~~~eV~G~i~~~~~lsg~p~~~l~ln~~~------------~~~~d~~fHpcVd~ 352 (523)
.|.+|||||||+|+|+++++++|.+++++|+|+|.|+++|+|+|+|+|+||++. ...+||+||||||+
T Consensus 8 ~y~~nei~vdV~E~v~~~~~~~G~v~~~~v~G~i~~~~~lsG~p~~~l~ln~~~~~~~~~~~~~~~~~l~d~~fH~cV~~ 87 (266)
T 4en2_M 8 KYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQCVRL 87 (266)
T ss_dssp CCSSEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECCSCCEEEEEECBHHHHHHTTCTTSCCBCCEEEEECTTBCH
T ss_pred ccccCeEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEECCCCCEEEEEEcCccccccccccccCccCccccccccccCH
Confidence 455579999999999999999999999999999999999999999999998741 12479999999999
Q ss_pred ccccccceEEEeCCCCCccccccccccCCCCCcCCeEEEEEEEeeC-C--eEEEEEEEEecCCceeeeEEEEecCCCCCC
Q 042402 353 ELFTHENILGLKDPNRPFPQAKLWRMQSADESMVPLTINCWPSVSG-N--ETYVSIEYEASTMFDLRNVVISVPLPALRE 429 (523)
Q Consensus 353 ~~f~~~r~Isf~pPdg~F~L~~~yr~~~~d~~~lP~~i~~~~~~~~-~--~~~v~i~~~~~~~~~~~~V~V~iPlP~~~~ 429 (523)
++|+++|+|+|+||||+|+|| +||++. +..+||.++||+++.+ + ++.+.++.+++.+..++||.|+||+|+.+.
T Consensus 88 ~~f~~~r~i~f~PPdg~F~Lm-~yr~~~--~~~~Pi~i~~~~~~~~~~~vei~v~~k~~~~~~~~~~nV~I~IP~P~~~~ 164 (266)
T 4en2_M 88 SRFENDRTISFIPPDGEFELM-SYRLNT--HVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDAD 164 (266)
T ss_dssp HHHHHHCCCEECCCSEEEEEE-EEEECC--CCCCSEEEEEEEEEEETTEEEEEEEEEECBCTTCEEEEEEEEEECCTTCE
T ss_pred hHccccceEEEeCCCCceEEE-EEEecC--CCCCCEEEEEEEecCCCEEEEEEEEEecCCCCCcEEEEEEEEECCCCCcC
Confidence 999999999999999999999 899987 4679999999999875 3 445555557777788999999999999888
Q ss_pred CCeEEeecceEEEECCCCEEEEEEceecC-CCceEEEEEEeCC---CCCCCCCCeEEEEEecc-cccCceEeEEEECCCC
Q 042402 430 APSVRQIDGEWRYDSRNSVLEWTILLIDN-SNRSGSMEFVVPP---ADSSSFFPISVRFSATS-TYSDLKVVNIIPLRGG 504 (523)
Q Consensus 430 ~~~~~~~~G~~~~~~~~~~l~W~I~~i~~-~~~s~s~ef~~~~---~~~~~~~Pi~v~F~ip~-t~Sgl~V~~l~i~~~~ 504 (523)
.|.+.+..|+++|++++++|+|+|++++| .+.+++++|.+++ ...+.++||+|+|++|+ ++|||+|++|++.+..
T Consensus 165 ~~~~~~~~G~~~y~~~~~~lvW~I~~~~g~~e~~l~~~~~l~s~~~~~~~~~~pI~v~F~ip~~t~SGl~V~~L~v~e~~ 244 (266)
T 4en2_M 165 SPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEKS 244 (266)
T ss_dssp EEEEEESSSEEEEETTTTEEEEEEEEEESSCEEEEEEEEEC----------CCCEEEEEEEESEESSCCCEEEEEEECSS
T ss_pred cceEEecCceEEEeccCCEEEEEEeeECCCcceEEEEEEEeCCCCCCCcccCCcEEEEEEeCCceeCCcEEEEEEeeccC
Confidence 89999999999999999999999999999 5588999999864 34678999999999998 9999999999998853
Q ss_pred CCCee-eEEEEEEeeceEE
Q 042402 505 APPKF-SQRTVLITENYQV 522 (523)
Q Consensus 505 ~~i~~-~~~~~~~~~~y~i 522 (523)
..-.| ++++..++++|+|
T Consensus 245 ~y~~~kwVrY~T~sg~y~~ 263 (266)
T 4en2_M 245 GYQALPWVRYITQNGDYQL 263 (266)
T ss_dssp CCCEEEEEEEEEECSSEEE
T ss_pred CCCCCCCEEEEEeCCCEEE
Confidence 22233 5999999999997
No 5
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=100.00 E-value=4.5e-52 Score=434.20 Aligned_cols=235 Identities=16% Similarity=0.180 Sum_probs=208.5
Q ss_pred CCCCCCeEEEEEEEEEEEEecCCCeEEEEEEEEEEEEEecCCCceEEEEeeCCC--------------------CCCCCc
Q 042402 285 PPLTDPITLTVEEKINVSLKRDGGMSNFDVQGTLSLQILNQEDGLIQVQIETGG--------------------NPGILF 344 (523)
Q Consensus 285 ~~~~neI~vdV~Ekv~~~~~~~G~v~~~eV~G~i~~~~~lsg~p~~~l~ln~~~--------------------~~~~d~ 344 (523)
+|.+|||||||+|+|+++++++|.+++++|+|+|.|+++|+|||+|+|+||++. ...+||
T Consensus 117 ~y~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~k~~LsG~P~~~l~LNd~~~~~~~~~~~~~~~~~~~~~~i~l~d~ 196 (385)
T 3ml6_A 117 GGSRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDC 196 (385)
T ss_dssp CCCCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSCCEEEEEECC----------------------CCCCEE
T ss_pred ccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcCccccccccccccccccccccCceEcccc
Confidence 466679999999999999999999999999999999999999999999998741 123899
Q ss_pred ccccccCcccccccceEEEeCCCCCccccccccccCCCCCcCCeEEEEEEEeeCC---eEEEEEEEEecCCceeeeEEEE
Q 042402 345 KTHPNMNKELFTHENILGLKDPNRPFPQAKLWRMQSADESMVPLTINCWPSVSGN---ETYVSIEYEASTMFDLRNVVIS 421 (523)
Q Consensus 345 ~fHpcVd~~~f~~~r~Isf~pPdg~F~L~~~yr~~~~d~~~lP~~i~~~~~~~~~---~~~v~i~~~~~~~~~~~~V~V~ 421 (523)
+||||||+++|+++|+|+|+||||+|+|| +||++. +..+||++.||+++.++ ++.+.++.+++.+..++||.|+
T Consensus 197 ~FH~CV~l~~f~~~r~IsFiPPDg~F~Lm-~Yr~~~--~~~~Pf~i~~~v~~~~~~~vei~v~lk~~f~~~~~~~nV~I~ 273 (385)
T 3ml6_A 197 TFHQCVRLSKFDSERSISFIPPDGEFELM-RYRTTK--DIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVR 273 (385)
T ss_dssp EECTTBCCCCSSSCSEEEECCCSEEEEEE-EEEECS--SCCCSEEEEEEEEEETTTEEEEEEEEEECSCTTCCEEEEEEE
T ss_pred ccccccChhHccccceEEEeCCCCceEEE-EEEcCC--CCCCCEEEEEEEEeCCCeEEEEEEEEeecCCCcceEEEEEEE
Confidence 99999999999999999999999999999 899976 57799999999999863 5556666777777889999999
Q ss_pred ecCCCCCCCCeEEeecceEEEECCCCEEEEEEceecC-CCceEEEEEEeCC---CCCCCCCCeEEEEEecccccCceEeE
Q 042402 422 VPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDN-SNRSGSMEFVVPP---ADSSSFFPISVRFSATSTYSDLKVVN 497 (523)
Q Consensus 422 iPlP~~~~~~~~~~~~G~~~~~~~~~~l~W~I~~i~~-~~~s~s~ef~~~~---~~~~~~~Pi~v~F~ip~t~Sgl~V~~ 497 (523)
||+|+++..+++.+..|+++|++++++|+|+|++++| ++.+++++|+++. ...+.++||+|+|+||.++|||+|++
T Consensus 274 IP~P~~~~~~~~~~~~G~~~y~~~~~~lvW~I~k~~g~~e~~l~~~~~l~~~~~~~~~~~~PI~v~F~Ip~t~SGl~Vr~ 353 (385)
T 3ml6_A 274 IPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRY 353 (385)
T ss_dssp EECCTTEEEEEEEESSSEEEEEGGGTEEEEEEEEECSSEEEEEEEEEEECCCSSCCSCCCCCEEEEEEESSCTTCCCEEE
T ss_pred ecCCCCcccceEEecCceEEEeccCcEEEEEeeeECCCcceEEEEEEEECCCCCCccccCCCEEEEEEEeccccCCEEEE
Confidence 9999988889999999999999999999999999999 5789999999964 34577999999999999999999999
Q ss_pred EEECCCC----CCCee-eEEEEEEeeceEE
Q 042402 498 IIPLRGG----APPKF-SQRTVLITENYQV 522 (523)
Q Consensus 498 l~i~~~~----~~i~~-~~~~~~~~~~y~i 522 (523)
|++.+.. ..-.| ++++..++++|+|
T Consensus 354 L~v~e~~~~~~~y~~~kwVRYiT~sg~Y~~ 383 (385)
T 3ml6_A 354 LKVFEPKLNYSDHDVIKWVRYIGRSGIYET 383 (385)
T ss_dssp EEEECSSSCCCGGGCEEEEEECEEEEEEEE
T ss_pred EEEecccCcccCCCccccEEEEEECCCEEe
Confidence 9997751 12233 5899999999997
No 6
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}
Probab=100.00 E-value=9.2e-51 Score=411.53 Aligned_cols=235 Identities=18% Similarity=0.244 Sum_probs=200.7
Q ss_pred CCCCCCeEEEEEEEEEEEEecCCCeEEEEEEEEEEEEEecCCCceEEEEeeCCC----------C---CCCCcccccccC
Q 042402 285 PPLTDPITLTVEEKINVSLKRDGGMSNFDVQGTLSLQILNQEDGLIQVQIETGG----------N---PGILFKTHPNMN 351 (523)
Q Consensus 285 ~~~~neI~vdV~Ekv~~~~~~~G~v~~~eV~G~i~~~~~lsg~p~~~l~ln~~~----------~---~~~d~~fHpcVd 351 (523)
.|.+|||||||+|+|+++++++|.+++++|+|+|.|+++|+|||+|+|+||++. . ..+||+||||||
T Consensus 29 ~~~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Lnd~~~~~~~~~~~~~~~~~l~d~~fH~cV~ 108 (301)
T 3l81_A 29 QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFSVGKSELRGYGPGIRVDEVSFHSSVN 108 (301)
T ss_dssp ----CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCTTCEEEEEECSSCEESCCTTTCCCSSSEESEEEEETTCB
T ss_pred cCCcceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcccccccccccccccCceEccccccccccC
Confidence 689999999999999999999999999999999999999999999999998641 1 137999999999
Q ss_pred cccccccceEEEeCCCCCccccccccccCCCCCcCCeEEEEEEEeeCC----eEEEEEEEEecCCceeeeEEEEecCCCC
Q 042402 352 KELFTHENILGLKDPNRPFPQAKLWRMQSADESMVPLTINCWPSVSGN----ETYVSIEYEASTMFDLRNVVISVPLPAL 427 (523)
Q Consensus 352 ~~~f~~~r~Isf~pPdg~F~L~~~yr~~~~d~~~lP~~i~~~~~~~~~----~~~v~i~~~~~~~~~~~~V~V~iPlP~~ 427 (523)
+++|+++|+|+|+||||+|+|| +||++......+||.+.||+++.++ ++.++++..++.+..++||.|+||+|+.
T Consensus 109 ~~~f~~~r~IsFiPPDg~F~Lm-~Yr~~~~~~~~~P~~v~~~v~~~~~~~~ie~~l~l~~~f~~~~~~~nV~I~IPvP~~ 187 (301)
T 3l81_A 109 LDEFESHRILRLQPPQGELTVM-RYQLSDDLPSPLPFRLFPSVQWDRGSGRLQVYLKLRCDLLSKSQALNVRLHLPLPRG 187 (301)
T ss_dssp CTTHHHHCEEEECCCSEEEEEE-EEEECSCCSSCCSEEEEEEEEECTTTSEEEEEEEEEECSCTTCEEEEEEEEEECCTT
T ss_pred hhHccccceEEecCCCCeeEEE-EEEecCCCccCCCEEEEEEEEECCCcEEEEEEEEEecCCCCCcEEEEEEEEEcCCCC
Confidence 9999999999999999999999 8999875445799999999999764 4556666777878899999999999998
Q ss_pred CCCCe--EEeecceEEEECCCCEEEEEEceecC-CCceEEEEEEeCCC-C-----------CCCCCCeEEEEEecc-ccc
Q 042402 428 REAPS--VRQIDGEWRYDSRNSVLEWTILLIDN-SNRSGSMEFVVPPA-D-----------SSSFFPISVRFSATS-TYS 491 (523)
Q Consensus 428 ~~~~~--~~~~~G~~~~~~~~~~l~W~I~~i~~-~~~s~s~ef~~~~~-~-----------~~~~~Pi~v~F~ip~-t~S 491 (523)
+..++ +.+..|+++| .+++|+|+|++++| .+.+++++|.++.. + .+.++||+|+|+||+ ++|
T Consensus 188 ~~~~~~~~~~~~G~~~y--~~~~lvW~I~~~~g~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~PI~v~F~ip~~t~S 265 (301)
T 3l81_A 188 VVSLSQELSSPEQKAEL--AEGALRWDLPRVQGGSQLSGLFQMDVPGPPGPPSHGLSTSASPLGLGPASLSFELPRHTCS 265 (301)
T ss_dssp CEEEEEEESSTTCEEEE--ETTEEEEEECCEETTCEEEEEEEEECCCCCC------------CCCCCEEEEEEEETCCSS
T ss_pred cccceEEEeecCceEEE--eCcEEEEEEeeECCCcEEeEEEEEEecCCccccccccccccccccCCCEEEEEEeCCcccc
Confidence 77777 5577999999 88999999999999 57889999988632 1 467999999999998 999
Q ss_pred CceEeEEEECCCCC--CCee-eEEEEEEeeceEE
Q 042402 492 DLKVVNIIPLRGGA--PPKF-SQRTVLITENYQV 522 (523)
Q Consensus 492 gl~V~~l~i~~~~~--~i~~-~~~~~~~~~~y~i 522 (523)
||+|++|++.+... .-.| ++++..++++|+|
T Consensus 266 Gl~Vr~L~v~e~~~~~y~~~kwVRYiT~sg~Y~~ 299 (301)
T 3l81_A 266 GLQVRFLRLAFRPSGNANPHKWVRHLSHSDAYVI 299 (301)
T ss_dssp CCCEEEEEEEC-------CEEEEEEEEEEEEEEE
T ss_pred CcEEEEEEEecccccCCCCccceEEEEeCCcEEE
Confidence 99999999988531 2233 5899999999997
No 7
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.97 E-value=5.9e-30 Score=235.99 Aligned_cols=137 Identities=20% Similarity=0.246 Sum_probs=120.8
Q ss_pred EEEEEEEcCCCCEEEEEcceecchHHHHHHHhhhchhhcC--CCCCcEEEeCCEEEEEEEcCCEEEEEEEcCCCCHHHHH
Q 042402 3 VLAASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGT--GKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDL 80 (523)
Q Consensus 3 v~s~~Il~~~G~~lisR~yr~~~r~~~e~~l~~F~~~i~~--~~~~p~i~~~~~~yvy~~~~~ly~v~~t~~n~n~~~~l 80 (523)
|.+++|+|++|+++++|+|++.+...-..+...|++++.. +++||+++.++++|+|+++++|||+++++.|+|++.++
T Consensus 2 I~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~l 81 (158)
T 1w63_Q 2 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELITL 81 (158)
T ss_dssp EEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSCSSSCSEEEETTEEEEEEEETTEEEEEEECSSSCHHHHH
T ss_pred eEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccCCCCCCeEEECCEEEEEEEECCEEEEEEecCCCCHHHHH
Confidence 6899999999999999999965543333445568888876 35799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHhhHHHHHHhHHhHHhCCeecccCHHHHHHHhhccch
Q 042402 81 ETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLGHKENVTVAQVKQYCEMESH 139 (523)
Q Consensus 81 e~L~~l~~il~~y~g~l~E~~I~~niyel~~~lDEiid~G~pq~t~~~~lk~~i~m~s~ 139 (523)
|+||+|++++++|||+++|++|++|...++++||||+|+||||+|++++|+++|.+++.
T Consensus 82 e~L~~~vevl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~~ 140 (158)
T 1w63_Q 82 ELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADL 140 (158)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcchh
Confidence 99999999999999999999999994444444999999999999999999999998654
No 8
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=99.96 E-value=2.6e-29 Score=227.84 Aligned_cols=135 Identities=18% Similarity=0.309 Sum_probs=120.0
Q ss_pred EEEEEEEcCCCCEEEEEcceecchHHHHHHHhhhchhhcC--CCCCcEEEeCCEEEEEEEcCCEEEEEEEcCCCCHHHHH
Q 042402 3 VLAASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGT--GKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDL 80 (523)
Q Consensus 3 v~s~~Il~~~G~~lisR~yr~~~r~~~e~~l~~F~~~i~~--~~~~p~i~~~~~~yvy~~~~~ly~v~~t~~n~n~~~~l 80 (523)
|.+++|+|++|+++++|+|++++...-..+...|++++.. +++||+++.++++|+|+++++|||+++++.|+|++.++
T Consensus 2 I~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~~~~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~l 81 (142)
T 2vgl_S 2 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYL 81 (142)
T ss_dssp EEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHTCCTTSCSEEEETTEEEEEEEETTEEEEEEECTTSCHHHHH
T ss_pred eEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHhcCCCCCCCEEEECCEEEEEEEECCEEEEEEeCCCCCHHHHH
Confidence 6999999999999999999976654445566779988886 35799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHhhHHHHHHhHHhHHhCCeecccC-HHHHHHHhhcc
Q 042402 81 ETLRLLSKLVPEYSYSLDEEGICKTAFELLFAFDEVISLGHKENVT-VAQVKQYCEME 137 (523)
Q Consensus 81 e~L~~l~~il~~y~g~l~E~~I~~niyel~~~lDEiid~G~pq~t~-~~~lk~~i~m~ 137 (523)
|+||++++++++|||+++|++|++|...++++||||+|+||||+|+ .+.|+.++.+|
T Consensus 82 e~L~~~ve~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~~~ 139 (142)
T 2vgl_S 82 EAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQ 139 (142)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHhhh
Confidence 9999999999999999999999999444444499999999999985 77799998875
No 9
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=99.94 E-value=4e-26 Score=208.80 Aligned_cols=130 Identities=17% Similarity=0.200 Sum_probs=112.4
Q ss_pred eEEEEEEEcCCCCEEEEEcce-ec-c---hHHHHHHHhhhchhhcCCCCCcEEEeCCEEEEEEEcCCEEEEEEEcCCCCH
Q 042402 2 VVLAASIVSKSGKILVSRQFV-DM-S---RIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNI 76 (523)
Q Consensus 2 ~v~s~~Il~~~G~~lisR~yr-~~-~---r~~~e~~l~~F~~~i~~~~~~p~i~~~~~~yvy~~~~~ly~v~~t~~n~n~ 76 (523)
+|.+++|+|++|+++++|+|+ ++ + |..++. .+++++.. ..+|+++.++++|+|+++++|||+++++.|.|+
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~---~i~~~~~r-~~~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNe 87 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEK---NIFNKTHR-TDSEIALLEGLTVVYKSSIDLYFYVIGSSYENE 87 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHH---HHHHHHSS-CCCCEEEETTEEEEEEECSSCEEEEEEETTSCH
T ss_pred HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHH---HHHHHHhC-CCCCEEEECCEEEEEEEECCEEEEEEEcCCCCh
Confidence 578999999999999999999 53 4 344453 24455543 347999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc-CCCChhhHHhh---HHHHHHhHHhHHhCCeecccCHHHHHHHhhccc
Q 042402 77 LEDLETLRLLSKLVPEYS-YSLDEEGICKT---AFELLFAFDEVISLGHKENVTVAQVKQYCEMES 138 (523)
Q Consensus 77 ~~~le~L~~l~~il~~y~-g~l~E~~I~~n---iyel~~~lDEiid~G~pq~t~~~~lk~~i~m~s 138 (523)
+.++|+||+|++++++|| |.++|++|++| +|+| ||||+|+|+||+|+++.|...+.|.+
T Consensus 88 l~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~l---LDE~id~G~~~eT~~~~I~~~v~~~~ 150 (153)
T 3tjz_C 88 LMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLA---VDEIVDGGVILESDPQQVVHRVALRG 150 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHH---HHHHEETTEECCCCHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH---HHHHHcCCEeeeCCHHHHHHHHhccc
Confidence 999999999999999999 99999999999 7777 99999999999999999999988743
No 10
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae}
Probab=98.93 E-value=3.2e-07 Score=92.23 Aligned_cols=222 Identities=14% Similarity=0.201 Sum_probs=140.7
Q ss_pred CeEEEEEEEEEEEEecCCCeEEEEEEEEEEEEEecC---C---CceEEEEeeCCCCCCCCcccccccCcccccccceEEE
Q 042402 290 PITLTVEEKINVSLKRDGGMSNFDVQGTLSLQILNQ---E---DGLIQVQIETGGNPGILFKTHPNMNKELFTHENILGL 363 (523)
Q Consensus 290 eI~vdV~Ekv~~~~~~~G~v~~~eV~G~i~~~~~ls---g---~p~~~l~ln~~~~~~~d~~fHpcVd~~~f~~~r~Isf 363 (523)
++-..|.|.||+.+ ++|.+.++.|.|+|.+.-... . -+.+.+.|++-. ..+++.-.+..=-+ - ..+.-.|
T Consensus 69 GLnASI~E~VNA~F-kgg~~tk~~v~GEiaLsy~~~~~s~~p~p~~l~fRL~N~~-~Lekv~pN~~fv~~-~-~~~eF~v 144 (328)
T 3g9h_A 69 GLNASIAEVLNASF-KDGMLQNSQLIGEIALNYLPNSVMNSPLPIGINLRINNGA-KFEKVILNQAFIER-V-APEEFKV 144 (328)
T ss_dssp EEEEEEEEEEEEEE-ETTEEEEEEEEEEEEEEEECCSSSCCCCCSEEEEEEETGG-GEEEEEECTTTEEE-E-ETTEEEE
T ss_pred ceeEEEEEEEEEEE-ECCcEEEEEEEEEEEEecCCCccccCCCCccEEEEecCcc-hhheeeCCHHHhcc-C-CCCCEEE
Confidence 78889999999999 678899999999999975432 1 245778886531 11111111100000 0 0111111
Q ss_pred eCC---CCCccccccccccCCCCCcCCeEEEEEEEeeCCeEEEEEEEEecCC-------ceeeeEEEEecCCCCCCCCeE
Q 042402 364 KDP---NRPFPQAKLWRMQSADESMVPLTINCWPSVSGNETYVSIEYEASTM-------FDLRNVVISVPLPALREAPSV 433 (523)
Q Consensus 364 ~pP---dg~F~L~~~yr~~~~d~~~lP~~i~~~~~~~~~~~~v~i~~~~~~~-------~~~~~V~V~iPlP~~~~~~~~ 433 (523)
.++ .+.-.++ .|+++. ...||.+.+..........|.|.|.+++. ..++||+|.+|+.. +....+
T Consensus 145 n~~~L~sktv~~l-KYqVs~---~~~PL~l~p~WK~E~~qtsliI~Yk~NP~~~~~~~~~~L~Nv~~~V~ldG-a~ats~ 219 (328)
T 3g9h_A 145 NPSFIDSRTLGAI-KYSIKE---PIAPIVIHPVWRFESHQASVVLTVKMSPSLPDEISQIVIEDLVVFVNIDG-ANATSA 219 (328)
T ss_dssp CTTTTBTCEEEEE-EEEEES---CCCSEEEEEEEEECSSEEEEEEEEEECTTSCTTCCEEEEEEEEEEEEBCS-SCEEEE
T ss_pred chHHhcccceeeE-EEEECC---CCCCeEEEeeeecCCCeeEEEEEEEECCCCcCcCCCceeeeEEEEEEeCC-CceeEE
Confidence 111 0111223 488853 67999998877777777788888887753 37999999999965 221222
Q ss_pred EeecceEEEECCCCEEEEEEce-e--cC-CC-ceEEEEEEeCCCCCCCCCCeEEEEEecc-c---------ccCceEeEE
Q 042402 434 RQIDGEWRYDSRNSVLEWTILL-I--DN-SN-RSGSMEFVVPPADSSSFFPISVRFSATS-T---------YSDLKVVNI 498 (523)
Q Consensus 434 ~~~~G~~~~~~~~~~l~W~I~~-i--~~-~~-~s~s~ef~~~~~~~~~~~Pi~v~F~ip~-t---------~Sgl~V~~l 498 (523)
.+. -...|..+++.+.|+|+. + .. .+ ..+.++|.........-..+.++|++.. . -|||-|...
T Consensus 220 qsk-P~gtwn~e~~ri~Wkl~e~l~l~~~g~~gkLiARf~~~g~~~~~~~gV~akF~~~~~~~~~~~~~~~gsgi~i~~~ 298 (328)
T 3g9h_A 220 LSK-PQGSFSKEKKRITWRFKEPVVLTRNGEGQRLIARFITDGLAHESAKGVITKFTISETDNVALPHSGAGSGITLTCQ 298 (328)
T ss_dssp EES-SSCCBCSSSCEEEEECSSCEEEETTCCCEEEEEEEEESSCCCBCSSCEEEEEEECCCSCSSCTTTTCSCCCEEEEE
T ss_pred Eec-CCceeccccCEEEEECCCCcccccCCCCCeEEEEEEcCCCCCCCCCcEEEEEEEeCCCcccccccccCCceeEEec
Confidence 222 234677899999999999 4 32 22 5677788874322222233999999986 3 469999888
Q ss_pred EECCC----CCCCeeeEEEEEEeeceE
Q 042402 499 IPLRG----GAPPKFSQRTVLITENYQ 521 (523)
Q Consensus 499 ~i~~~----~~~i~~~~~~~~~~~~y~ 521 (523)
...++ ++=.+-.+...|.+++|.
T Consensus 299 ~~~~~dPF~~~W~~v~~~r~l~~G~Y~ 325 (328)
T 3g9h_A 299 ELDENNPFGGEWLDVNTKRTLTTGNYH 325 (328)
T ss_dssp EESSSCTTCCCCEECEEEEEEEEEEEE
T ss_pred ccccCCCCcCcccccceEEEEeeeEEE
Confidence 76542 333334588999999996
No 11
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=92.86 E-value=0.8 Score=42.38 Aligned_cols=91 Identities=11% Similarity=0.098 Sum_probs=61.4
Q ss_pred CeEEEEEEEcCCCCEEEEEcceecchHHHHHHHhhhchhhcCCCCCcEEEeCCEEEEEEEcCCEEEEEEEcCCCCHHHHH
Q 042402 1 MVVLAASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDL 80 (523)
Q Consensus 1 m~v~s~~Il~~~G~~lisR~yr~~~r~~~e~~l~~F~~~i~~~~~~p~i~~~~~~yvy~~~~~ly~v~~t~~n~n~~~~l 80 (523)
|.|+=++|. +|.++|+.. ...+. ....+.......+.....--.++.+++.|-|...+++.++|+|+....--..+
T Consensus 2 M~ilYa~VA--rg~~iLae~-t~~~g-nf~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af 77 (189)
T 4b93_A 2 MAILFAVVA--RGTTILAKH-AWCGG-NFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAF 77 (189)
T ss_dssp CSEEEEEEE--ETTEEEEEE-ESSEE-CHHHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHH
T ss_pred CceEEEEEE--eCCEEEEeC-CCCCC-CHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHH
Confidence 787777776 477888764 32221 11111111112222211112578899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 042402 81 ETLRLLSKLVPEYSY 95 (523)
Q Consensus 81 e~L~~l~~il~~y~g 95 (523)
.||..+.+-+..-+|
T Consensus 78 ~fL~~i~~eF~~~~~ 92 (189)
T 4b93_A 78 SFLNEVKKRFQTTYG 92 (189)
T ss_dssp HHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999888876665
No 12
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=92.72 E-value=1.2 Score=41.72 Aligned_cols=95 Identities=13% Similarity=0.137 Sum_probs=69.0
Q ss_pred CeEEEEEEEcCCC-CEEEEEcceecc------hHHHHHHHhhhchhhcCCCCC---cEEEeCCEEEE-EEEcCCEEEEEE
Q 042402 1 MVVLAASIVSKSG-KILVSRQFVDMS------RIRIEGLLAAFPKLVGTGKQH---TYVETENVRYV-YQPIEALYLLLV 69 (523)
Q Consensus 1 m~v~s~~Il~~~G-~~lisR~yr~~~------r~~~e~~l~~F~~~i~~~~~~---p~i~~~~~~yv-y~~~~~ly~v~~ 69 (523)
|=|.++.|+-..| ++.+-..-.|++ |..+..++.-+-+.+...-.+ -.++.+++.|- |...+++.++++
T Consensus 2 mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~~r~s~~~~~y~fH~y~~~~gl~yl~i 81 (199)
T 3kyq_A 2 MKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRSDSLAGVVI 81 (199)
T ss_dssp CCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTTEEEEEECSSEEEEEEECTTSEEEEEE
T ss_pred ceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCCCeEEEEeCCEEEEEEEecCCEEEEEE
Confidence 6688999997765 455444444554 777777655444444432111 24778888887 899999999999
Q ss_pred EcCCCCHHHHHHHHHHHHHHHHhhcC
Q 042402 70 TNKQSNILEDLETLRLLSKLVPEYSY 95 (523)
Q Consensus 70 t~~n~n~~~~le~L~~l~~il~~y~g 95 (523)
|+....--..+.||..+.+-+..-++
T Consensus 82 td~~yp~r~AF~fL~ei~~eF~~~~~ 107 (199)
T 3kyq_A 82 ADSEYPSRVAFTLLEKVLDEFSKQVD 107 (199)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999888877665
No 13
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=92.04 E-value=1.5 Score=38.66 Aligned_cols=95 Identities=17% Similarity=0.138 Sum_probs=65.6
Q ss_pred CeEEEEEEEcCC-CCEEEEEcceecc------hHHHHHHHhhhchhhcC---CCCCcEEEeCCEEEEEE-EcCCEEEEEE
Q 042402 1 MVVLAASIVSKS-GKILVSRQFVDMS------RIRIEGLLAAFPKLVGT---GKQHTYVETENVRYVYQ-PIEALYLLLV 69 (523)
Q Consensus 1 m~v~s~~Il~~~-G~~lisR~yr~~~------r~~~e~~l~~F~~~i~~---~~~~p~i~~~~~~yvy~-~~~~ly~v~~ 69 (523)
|-|+++.|+-.+ ++.++-....|++ |+.+..++..+-+.+.. ..+---++.+++.|-|. ..++|-++|+
T Consensus 5 Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~~R~sv~~~~y~fH~~~~~~gl~~l~i 84 (144)
T 3bw6_A 5 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQSIEEGNYIGHVYARSEGICGVLI 84 (144)
T ss_dssp CCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTTEEEEEEETTEEEEEEECTTSEEEEEE
T ss_pred EEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCCceEEEEeCCEEEEEEEecCCEEEEEE
Confidence 778999888653 2355555555554 55555544444455532 11112477788888777 7799999999
Q ss_pred EcCCCCHHHHHHHHHHHHHHHHhhcC
Q 042402 70 TNKQSNILEDLETLRLLSKLVPEYSY 95 (523)
Q Consensus 70 t~~n~n~~~~le~L~~l~~il~~y~g 95 (523)
|+.+..--..+.||..+.+-+..-+|
T Consensus 85 ~D~~yp~rvAF~~L~~i~~eF~~~y~ 110 (144)
T 3bw6_A 85 TDKEYPVRPAYTLLNKILDEYLVAHP 110 (144)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred ECCCCChhHHHHHHHHHHHHHHHHcc
Confidence 99999999999999988877766554
No 14
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=91.63 E-value=2.4 Score=39.21 Aligned_cols=95 Identities=13% Similarity=0.060 Sum_probs=60.5
Q ss_pred CeEEEEEEEcCCCCEEEEEccee-c---chHHHHHHHhhhchhhcC-CCCCcEEEeCCEEEEEEEcCCEEEEEEEcCCCC
Q 042402 1 MVVLAASIVSKSGKILVSRQFVD-M---SRIRIEGLLAAFPKLVGT-GKQHTYVETENVRYVYQPIEALYLLLVTNKQSN 75 (523)
Q Consensus 1 m~v~s~~Il~~~G~~lisR~yr~-~---~r~~~e~~l~~F~~~i~~-~~~~p~i~~~~~~yvy~~~~~ly~v~~t~~n~n 75 (523)
|++.+...-..+|-+|.+-.--+ . .+......+....+.+.. ...--.++.+++.|.|...+++.++|+|+.+..
T Consensus 2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~yp 81 (196)
T 2nut_C 2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFP 81 (196)
T ss_dssp CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSC
T ss_pred ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCcc
Confidence 55555444444576665532211 1 122233333333333432 111124778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 042402 76 ILEDLETLRLLSKLVPEYSY 95 (523)
Q Consensus 76 ~~~~le~L~~l~~il~~y~g 95 (523)
.-..+.||..+.+-+..-++
T Consensus 82 ~r~af~fL~~i~~~F~~~~~ 101 (196)
T 2nut_C 82 KKLAFAYLEDLHSEFDEQHG 101 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhcc
Confidence 99999999999988776555
No 15
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=90.14 E-value=3 Score=38.04 Aligned_cols=91 Identities=11% Similarity=0.086 Sum_probs=61.2
Q ss_pred CeEEEEEEEcCCCCEEEEEcceecchHHHHHHHhhhchhhcCCCCCcEEEeCCEEEEEEEcCCEEEEEEEcCCCCHHHHH
Q 042402 1 MVVLAASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDL 80 (523)
Q Consensus 1 m~v~s~~Il~~~G~~lisR~yr~~~r~~~e~~l~~F~~~i~~~~~~p~i~~~~~~yvy~~~~~ly~v~~t~~n~n~~~~l 80 (523)
|.|+-++|.- |.++|+..-. .+ ...+.+.....+.+.....--.++.+++.|-|...+++-++|+|+....--..+
T Consensus 54 M~I~Ya~VAr--g~tiLAE~t~-~~-gnf~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF 129 (173)
T 4afi_A 54 MAILFAVVAR--GTTILAKHAW-CG-GNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAF 129 (173)
T ss_dssp CCEEEEEEEE--TTEEEEEEES-SC-CCHHHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHH
T ss_pred ccEEEEEEEC--CCEEEEEccC-CC-CCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHH
Confidence 7777777663 6677775432 22 112222212222222211223578899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 042402 81 ETLRLLSKLVPEYSY 95 (523)
Q Consensus 81 e~L~~l~~il~~y~g 95 (523)
.||..+.+-+..-+|
T Consensus 130 ~FLedI~~eF~~~yg 144 (173)
T 4afi_A 130 SFLNEVKKRFQTTYG 144 (173)
T ss_dssp HHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999988876665
No 16
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=89.36 E-value=2.5 Score=38.41 Aligned_cols=49 Identities=14% Similarity=0.059 Sum_probs=43.5
Q ss_pred EEEeCCEEEEEEEcCCEEEEEEEcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 042402 48 YVETENVRYVYQPIEALYLLLVTNKQSNILEDLETLRLLSKLVPEYSYS 96 (523)
Q Consensus 48 ~i~~~~~~yvy~~~~~ly~v~~t~~n~n~~~~le~L~~l~~il~~y~g~ 96 (523)
.++.+++.|-|...++|-|+|+++....-...+.||..+.+-+..-++.
T Consensus 87 s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI~~eF~~~y~~ 135 (169)
T 2vx8_A 87 TYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGS 135 (169)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHHHHHHHHHhhh
Confidence 5778999999988999999999999999999999999999888776653
No 17
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=87.75 E-value=3.3 Score=36.32 Aligned_cols=92 Identities=8% Similarity=0.049 Sum_probs=53.9
Q ss_pred Ce-EEEEEEEcCCCCEEEEEcceecch---HHHHHHHhhh---------chhhcCCCCCcEEEeC---C-EEEEEEEcCC
Q 042402 1 MV-VLAASIVSKSGKILVSRQFVDMSR---IRIEGLLAAF---------PKLVGTGKQHTYVETE---N-VRYVYQPIEA 63 (523)
Q Consensus 1 m~-v~s~~Il~~~G~~lisR~yr~~~r---~~~e~~l~~F---------~~~i~~~~~~p~i~~~---~-~~yvy~~~~~ 63 (523)
|+ |.+++|++++|.+|..|.|-...+ ..-..++..| -++.......-....+ . .-|.|+..-+
T Consensus 3 M~~i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg 82 (142)
T 2j3w_A 3 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGH 82 (142)
T ss_dssp CCCCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTC
T ss_pred cceEEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCC
Confidence 88 999999999999999999974221 1111122111 1111111111122332 2 2467788889
Q ss_pred EEEEEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 042402 64 LYLLLVTNKQSNILEDLETLRLLSKLVPEY 93 (523)
Q Consensus 64 ly~v~~t~~n~n~~~~le~L~~l~~il~~y 93 (523)
+=||++++.. +.-.+-.+|+++.++.-+|
T Consensus 83 ~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~ 111 (142)
T 2j3w_A 83 MRFIMLHDVR-QEDGIKNFFTDVYDLYIKF 111 (142)
T ss_dssp CEEEEEESSC-CHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCC-CcHHHHHHHHHHHHHHHHH
Confidence 9999999863 3445556777776655544
No 18
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=86.43 E-value=5.7 Score=34.88 Aligned_cols=91 Identities=13% Similarity=0.123 Sum_probs=66.0
Q ss_pred EEEEEEEcCCCCEEEEEcceecchHHH-HHHHhhhchhhcC------CCCCc-EEEeCCEEEEEEEcCCEEEEEEEcCCC
Q 042402 3 VLAASIVSKSGKILVSRQFVDMSRIRI-EGLLAAFPKLVGT------GKQHT-YVETENVRYVYQPIEALYLLLVTNKQS 74 (523)
Q Consensus 3 v~s~~Il~~~G~~lisR~yr~~~r~~~-e~~l~~F~~~i~~------~~~~p-~i~~~~~~yvy~~~~~ly~v~~t~~n~ 74 (523)
|.|++|.|+.|-+++.-..-+.+..+. ..++..|...... ++.-+ +-.++.+..|+.....|++..++..+.
T Consensus 38 l~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsTf~~A~dQ~sKLglGknksII~~Y~~yqvVq~n~~Plvit~Ias~~a 117 (143)
T 3cpt_A 38 LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASSSA 117 (143)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHHHHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEETTS
T ss_pred eEEEEEECCCCcEEEEecCCCCchhhcccchhhhHHHHHHHHhhcCCCCCceEEEEecCeEEEEEecCCEEEEEEecCCC
Confidence 689999999999988887765442222 2455566543332 45444 456788888998999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q 042402 75 NILEDLETLRLLSKLVPEY 93 (523)
Q Consensus 75 n~~~~le~L~~l~~il~~y 93 (523)
|.-.++.+=..|..++.+.
T Consensus 118 NtG~Il~Le~~L~p~l~~L 136 (143)
T 3cpt_A 118 NTGLIVSLEKELAPLFEEL 136 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CchhHhhhHHHHHHHHHHH
Confidence 9998888766666666544
No 19
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=83.98 E-value=4.7 Score=35.52 Aligned_cols=91 Identities=13% Similarity=0.138 Sum_probs=55.4
Q ss_pred CeEEEEEEEcCCCCEEEEEcce-e----cchHHHHHH-------HhhhchhhcCCCC-C--cEEEeCCE-EEEEEEcCCE
Q 042402 1 MVVLAASIVSKSGKILVSRQFV-D----MSRIRIEGL-------LAAFPKLVGTGKQ-H--TYVETENV-RYVYQPIEAL 64 (523)
Q Consensus 1 m~v~s~~Il~~~G~~lisR~yr-~----~~r~~~e~~-------l~~F~~~i~~~~~-~--p~i~~~~~-~yvy~~~~~l 64 (523)
|+|.+++|+|+.|.+|..|.|. . ++++.-..+ +.+|-..+..... . -.++++.+ -+.|+-.-++
T Consensus 1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~Tgi 80 (145)
T 2j3t_C 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGI 80 (145)
T ss_dssp -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSC
T ss_pred CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCC
Confidence 8999999999999999999995 2 121221111 1222223322111 1 23566665 4567888899
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHH-HHHHhh
Q 042402 65 YLLLVTNKQSNILEDLETLRLLS-KLVPEY 93 (523)
Q Consensus 65 y~v~~t~~n~n~~~~le~L~~l~-~il~~y 93 (523)
=||++|+.+.+. +-++|+++. ++.-+|
T Consensus 81 KFvl~td~~~~~--i~~~l~~iy~~lYv~~ 108 (145)
T 2j3t_C 81 KVVMNTDLGVGP--IRDVLHHIYSALYVEF 108 (145)
T ss_dssp EEEEEECTTCCC--CHHHHHHHHHTTHHHH
T ss_pred EEEEEecCCcch--HHHHHHHHHHHHHHHH
Confidence 999999877543 335666666 455544
No 20
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=79.81 E-value=14 Score=34.79 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=20.5
Q ss_pred CeEEEEEEEcCCCCEEEEEcce
Q 042402 1 MVVLAASIVSKSGKILVSRQFV 22 (523)
Q Consensus 1 m~v~s~~Il~~~G~~lisR~yr 22 (523)
|+|.+++|+|+.|..+..|.|.
T Consensus 1 M~i~sl~IiNk~GglIY~r~~~ 22 (219)
T 3cue_A 1 MAIETILVINKSGGLIYQRNFT 22 (219)
T ss_dssp -CEEEEEEECTTSCEEEEEECS
T ss_pred CeeEEEEEEeCCCCEEeehhhc
Confidence 8999999999999999999997
No 21
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=76.49 E-value=7.3 Score=34.87 Aligned_cols=91 Identities=14% Similarity=0.263 Sum_probs=52.1
Q ss_pred CeEEEEEEEcCCCCEEEEEccee-----------cchHHHHHH-------HhhhchhhcCCC-CC--cEEEeCCEE-EEE
Q 042402 1 MVVLAASIVSKSGKILVSRQFVD-----------MSRIRIEGL-------LAAFPKLVGTGK-QH--TYVETENVR-YVY 58 (523)
Q Consensus 1 m~v~s~~Il~~~G~~lisR~yr~-----------~~r~~~e~~-------l~~F~~~i~~~~-~~--p~i~~~~~~-yvy 58 (523)
|+|.+++|+|+.|..|-.|.|-. .....-..+ +.+|-+.+.... .. ..++++.++ +.|
T Consensus 1 M~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~ykl~~~ 80 (159)
T 3cue_C 1 MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTY 80 (159)
T ss_dssp CCCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCBEEEE
T ss_pred CeEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEEEEEE
Confidence 89999999999999999999942 111111111 122222222211 11 234455443 456
Q ss_pred EEcCCEEEEEEEcCCCCHHHHHHHHHHHHH-HHHhh
Q 042402 59 QPIEALYLLLVTNKQSNILEDLETLRLLSK-LVPEY 93 (523)
Q Consensus 59 ~~~~~ly~v~~t~~n~n~~~~le~L~~l~~-il~~y 93 (523)
+-.-++-||++|+.....+ -++|+++.. +.-+|
T Consensus 81 eT~TgiKFvl~td~~~~~i--~~~l~~iy~~lYv~y 114 (159)
T 3cue_C 81 CTASGLWFVLLSDFKQQSY--TQVLQYIYSHIYVKY 114 (159)
T ss_dssp CCSSCCEEEEECCSSSSCT--HHHHHHHHHHHHHHH
T ss_pred EeCCCCEEEEEeCCCcchH--HHHHHHHHHHHHHHH
Confidence 7778999999998775433 244555554 55444
No 22
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=48.32 E-value=19 Score=31.47 Aligned_cols=66 Identities=11% Similarity=0.221 Sum_probs=42.2
Q ss_pred EEEEEcCCCCEEEEEcceecchHHHHHHHhhhchhhcCC---------C------CCcEEEe-------CCEEEEE--EE
Q 042402 5 AASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGTG---------K------QHTYVET-------ENVRYVY--QP 60 (523)
Q Consensus 5 s~~Il~~~G~~lisR~yr~~~r~~~e~~l~~F~~~i~~~---------~------~~p~i~~-------~~~~yvy--~~ 60 (523)
.+.|++++|++|.. |-.+.|.-.|..+.+|...+... . .-+++.+ +++.++| -+
T Consensus 4 Qf~IFTp~GqVLy~--yn~l~kKf~e~qiN~fIS~LitsP~~~~~~~s~~~~~~~k~~~~~i~~~~k~~~~f~~~~~~sk 81 (158)
T 1nrj_A 4 QLAVFTPQGQVLYQ--YNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNLLTINSEHKNSPSFNALFYLNK 81 (158)
T ss_dssp EEEEECTTCBEEEE--EETTSCCCCHHHHHHHHHHHHHSCCCGGGEECSGGGTTCCEEEEECC--------CEEEEEEEE
T ss_pred eEEEeccCceEEEE--ecccCcchHHHHHHHHHHHHhcCCcccccccccccccccceeeEeecccccCCCCeeEEEEecC
Confidence 57899999999874 44444444555555676655430 1 2356776 7778877 56
Q ss_pred cCCEEEEEEEcC
Q 042402 61 IEALYLLLVTNK 72 (523)
Q Consensus 61 ~~~ly~v~~t~~ 72 (523)
...||||++--.
T Consensus 82 QP~LyfVvtyae 93 (158)
T 1nrj_A 82 QPELYFVVTFAE 93 (158)
T ss_dssp TTEEEEEEEESS
T ss_pred CCcEEEEEEecc
Confidence 778999998854
No 23
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=48.19 E-value=86 Score=28.62 Aligned_cols=86 Identities=17% Similarity=0.082 Sum_probs=53.6
Q ss_pred EEEEEcCCCCEEEEEcce-ecchHHHHHHHhhhchhhc-C-CCCCcEEEeCCEEEEEEEcC--CEEEEEEEcCCCCHHHH
Q 042402 5 AASIVSKSGKILVSRQFV-DMSRIRIEGLLAAFPKLVG-T-GKQHTYVETENVRYVYQPIE--ALYLLLVTNKQSNILED 79 (523)
Q Consensus 5 s~~Il~~~G~~lisR~yr-~~~r~~~e~~l~~F~~~i~-~-~~~~p~i~~~~~~yvy~~~~--~ly~v~~t~~n~n~~~~ 79 (523)
-+.|+++.|=+|-+.+-. ....+.+..+ .+.+. . ....+.+..+++++=|...| +|.||++-.+--+...+
T Consensus 13 ~~~IfTkGGvVLWs~~~~~~~~~~~IN~L----Ir~VlLEER~~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~Yi 88 (185)
T 2fh5_A 13 FFTIFSKGGLVLWCFQGVSDSCTGPVNAL----IRSVLLQERGGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYV 88 (185)
T ss_dssp EEEEEETTSBEEEEEBTTTBSCCCHHHHH----HHHTGGGC-------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHH
T ss_pred EEEEEeCCeEEEEeecCCcccccchHHHH----HHHhhhccccCCCceeEcCeEEEEEEeccCCEEEEEEEcccccchHH
Confidence 468999999999885322 2323445553 33222 2 22345678888888777776 59999998876666767
Q ss_pred HHHHHHHHHHHHhhc
Q 042402 80 LETLRLLSKLVPEYS 94 (523)
Q Consensus 80 le~L~~l~~il~~y~ 94 (523)
=++|..+...+.+.+
T Consensus 89 D~LL~~v~~~Fv~~Y 103 (185)
T 2fh5_A 89 DKLIDDVHRLFRDKY 103 (185)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777776666655
No 24
>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B
Probab=43.46 E-value=1.5e+02 Score=24.98 Aligned_cols=90 Identities=10% Similarity=0.106 Sum_probs=62.9
Q ss_pred EEEEEEEcCCCCEEEEEcceecchHHHHHHHhhhchhhcC--------CC-CCcEEEeCCEEEEEEEcCCEEEEEEEcCC
Q 042402 3 VLAASIVSKSGKILVSRQFVDMSRIRIEGLLAAFPKLVGT--------GK-QHTYVETENVRYVYQPIEALYLLLVTNKQ 73 (523)
Q Consensus 3 v~s~~Il~~~G~~lisR~yr~~~r~~~e~~l~~F~~~i~~--------~~-~~p~i~~~~~~yvy~~~~~ly~v~~t~~n 73 (523)
|-++.+++.+|-++-+...-+.+-+++-...+.++.+... +. ...++|.++-+.+-...++.++++.++.+
T Consensus 19 v~~a~lvs~DGllia~s~~~~~dae~laAias~~~sl~~~~~~~~~~~g~~~q~~ve~~~G~l~i~~a~~a~L~Vla~~~ 98 (125)
T 1vet_B 19 VQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAITRVANLLLCMYAKET 98 (125)
T ss_dssp EEEEEEECTTCCEEEEEECCSSCHHHHHHHHHHHHHHHHHHHCCTTTCCCCCEEEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred ceEEEEECCCCCeEEecCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCEEEEEEcCCeEEEEEeCCC
Confidence 4688999999988777665544444555555555442221 12 34688988766665555899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 042402 74 SNILEDLETLRLLSKLVPE 92 (523)
Q Consensus 74 ~n~~~~le~L~~l~~il~~ 92 (523)
.+.-.+.--++++++-|..
T Consensus 99 a~lGlv~~~m~~lv~~L~~ 117 (125)
T 1vet_B 99 VGFGMLKAKAQALVQYLEE 117 (125)
T ss_dssp SCHHHHHHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHHHHHhh
Confidence 9998888888888866543
No 25
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=27.89 E-value=39 Score=31.77 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=20.1
Q ss_pred CeEEEEEEEcCCCCEEEEEccee
Q 042402 1 MVVLAASIVSKSGKILVSRQFVD 23 (523)
Q Consensus 1 m~v~s~~Il~~~G~~lisR~yr~ 23 (523)
|||.+++|+|+.|..+..+.|..
T Consensus 1 m~iy~~yi~~~~~~liy~~~~~~ 23 (219)
T 2j3t_D 1 MAIFSVYVVNKAGGLIYQLDSYA 23 (219)
T ss_dssp -CEEEEEEECTTSCEEEEEECC-
T ss_pred CeEEEEEEEecCCceEEecccCC
Confidence 99999999999999999988874
No 26
>1ypr_A Profilin; actin-binding protein, cytoskeleton; 2.30A {Saccharomyces cerevisiae} SCOP: d.110.1.1 PDB: 1k0k_A
Probab=26.06 E-value=2.9e+02 Score=23.08 Aligned_cols=87 Identities=13% Similarity=0.177 Sum_probs=55.7
Q ss_pred EEEEEEEcCCC-CEEEEE-cceecchHHHHHHHhhhchhhcCCCCCcEEEeCCEEEEEEEcC------------------
Q 042402 3 VLAASIVSKSG-KILVSR-QFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIE------------------ 62 (523)
Q Consensus 3 v~s~~Il~~~G-~~lisR-~yr~~~r~~~e~~l~~F~~~i~~~~~~p~i~~~~~~yvy~~~~------------------ 62 (523)
+-.++|+..+| .+.-+. .| .++...+..++..|-.. . .-..+=+...|.+|+..+.+
T Consensus 15 ~~~aAI~g~DG~svwA~s~~f-~~~~~E~~~i~~~f~~~-~-~~~~~Gl~l~G~KY~~i~~d~~~i~~kk~~~Gi~i~kT 91 (125)
T 1ypr_A 15 VDKAVIYSRAGDAVWATSGGL-SLQPNEIGEIVQGFDNP-A-GLQSNGLHIQGQKFMLLRADDRSIYGRHDAEGVVCVRT 91 (125)
T ss_dssp CSEEEEEETTSCCEEEEESCC-CCCHHHHHHHHHHTTCT-H-HHHHHCEEETTEEEEEEEECSSEEEEEETTEEEEEEEC
T ss_pred ccEEEEEeCCCCcEEEECCCC-ccCHHHHHHHHHhccCc-c-hhccCCeEECCEEEEEEecCCcEEEEecCCceEEEEEC
Confidence 34789999999 555542 45 77777787877777221 0 01123467777777766644
Q ss_pred -CEEEEEEEcCCCCHHHHHHHHHHHHHHHHh
Q 042402 63 -ALYLLLVTNKQSNILEDLETLRLLSKLVPE 92 (523)
Q Consensus 63 -~ly~v~~t~~n~n~~~~le~L~~l~~il~~ 92 (523)
..++|+..+....+-..-....+|++-|.+
T Consensus 92 ~~aivI~~y~e~~~~g~~~~~ve~ladYL~~ 122 (125)
T 1ypr_A 92 KQTVIIAHYPPTVQAGEATKIVEQLADYLIG 122 (125)
T ss_dssp SSEEEEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 344667777777787777777777766643
No 27
>1j3w_A Giding PROTEIN-MGLB; gliding, motility, mutational function, riken structur genomics/proteomics initiative, RSGI, structural genomics; HET: MES; 1.50A {Thermus thermophilus} SCOP: d.110.7.1 PDB: 3t1r_A 3t1s_A 3t1x_A
Probab=23.87 E-value=3.7e+02 Score=23.58 Aligned_cols=92 Identities=13% Similarity=0.077 Sum_probs=57.6
Q ss_pred EEEEEEcCCCCEEEEEc---ceec-chHHHHHHHhhhchhhcC-------CC-CCcEEEeCCEEEEEEE-cCCEEEEEEE
Q 042402 4 LAASIVSKSGKILVSRQ---FVDM-SRIRIEGLLAAFPKLVGT-------GK-QHTYVETENVRYVYQP-IEALYLLLVT 70 (523)
Q Consensus 4 ~s~~Il~~~G~~lisR~---yr~~-~r~~~e~~l~~F~~~i~~-------~~-~~p~i~~~~~~yvy~~-~~~ly~v~~t 70 (523)
-++.+++.+|-++-++. .... +-.++-...+....+... +. ...+++.++...+... -++.++++++
T Consensus 30 ~~avlvs~DGl~ia~~~~~~~~~~~d~d~lAA~~A~~~sl~~~~a~~l~~G~~~q~~ve~~~g~l~v~~~g~~a~L~Vla 109 (163)
T 1j3w_A 30 RYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVAGNAAATQALAKLLGEARFQEEVHQGERMGLYVDEAGEHALLVLVF 109 (163)
T ss_dssp SEEEEEETTSCEEEEEECTTSCCCSCHHHHHHHHHHHHHHTHHHHHHTTCSSCSEEEEECSSCEEEEEESSTTEEEEEEE
T ss_pred eEEEEEcCCCCEEEeecccccCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCcEEEEEEeCCCeEEEEEe
Confidence 47899999998877743 4422 323333333333332221 22 3457887654444444 4569999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcC
Q 042402 71 NKQSNILEDLETLRLLSKLVPEYSY 95 (523)
Q Consensus 71 ~~n~n~~~~le~L~~l~~il~~y~g 95 (523)
+.+.|.-.+.-.++++++-+.+.+.
T Consensus 110 ~~~a~lG~v~~~m~~~v~~l~~~L~ 134 (163)
T 1j3w_A 110 DETAPLGKVKLHGKRASEALARIAE 134 (163)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHH
Confidence 9999998888888877777766653
No 28
>1acf_A Profilin I; protein binding, actin-binding protein, contractIle protein; 2.00A {Acanthamoeba castellanii} SCOP: d.110.1.1 PDB: 1prq_A 2prf_A 1f2k_A 2acg_A
Probab=23.50 E-value=3.2e+02 Score=22.74 Aligned_cols=86 Identities=17% Similarity=0.171 Sum_probs=53.4
Q ss_pred EEEEEEEcCCCCEEEEE-cceecchHHHHHHHhhhchhhcCCCCCcEEEeCCEEEEEEEcC-------------------
Q 042402 3 VLAASIVSKSGKILVSR-QFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIE------------------- 62 (523)
Q Consensus 3 v~s~~Il~~~G~~lisR-~yr~~~r~~~e~~l~~F~~~i~~~~~~p~i~~~~~~yvy~~~~------------------- 62 (523)
+..++|++.+|.+.-+. .| .++...+..++..|-.. . .-...-+.++|.+|+..+.+
T Consensus 16 ~~~aAIig~dGsvwA~s~~f-~~~~~E~~~i~~~f~~~-~-~~~~~Gi~l~G~KY~~i~~d~~~i~~kk~~~Gv~i~kT~ 92 (125)
T 1acf_A 16 VTQAAILGLDGNTWATSAGF-AVTPAQGTTLAGAFNNA-D-AIRAGGFDLAGVHYVTLRADDRSIYGKKGSSGVITVKTS 92 (125)
T ss_dssp CSEEEEEETTSCEEEECTTC-CCCHHHHHHHHHHHHCC-H-HHHHHCEEETTEEEEEEEESSSEEEEEETTEEEEEEECS
T ss_pred cceEEEEcCCCCEEEecCCC-ccCHHHHHHHHHHhcCc-c-hhhcCCeEECCEEEEEEEecCcEEEeecCCCeEEEEECC
Confidence 34678999999765542 34 67777777777766321 0 01223467777777665543
Q ss_pred CEEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 042402 63 ALYLLLVTNKQSNILEDLETLRLLSKLVP 91 (523)
Q Consensus 63 ~ly~v~~t~~n~n~~~~le~L~~l~~il~ 91 (523)
..++|+..+....+-..-....+|++-|.
T Consensus 93 ~aivI~~y~~~~~~g~~~~~ve~ladyL~ 121 (125)
T 1acf_A 93 KAILVGVYNEKIQPGTAANVVEKLADYLI 121 (125)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 34456666666777777777766666554
No 29
>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis}
Probab=23.50 E-value=3.2e+02 Score=22.74 Aligned_cols=92 Identities=14% Similarity=0.116 Sum_probs=54.3
Q ss_pred EEEEEEEcCCCCEEEEEcceec-chHHHHHHHhhhchhhcC-------CC-CCcEEEeCC-EEEEEEEcCCEEEEEEEcC
Q 042402 3 VLAASIVSKSGKILVSRQFVDM-SRIRIEGLLAAFPKLVGT-------GK-QHTYVETEN-VRYVYQPIEALYLLLVTNK 72 (523)
Q Consensus 3 v~s~~Il~~~G~~lisR~yr~~-~r~~~e~~l~~F~~~i~~-------~~-~~p~i~~~~-~~yvy~~~~~ly~v~~t~~ 72 (523)
|-++.+++.+|-++-+..=.+. .-.++-...+.+..+... +. ...+++.++ +-|++.--++.++++.++.
T Consensus 19 v~~avlvs~DGl~ia~~~~~~~~dae~lAA~~a~l~sl~~~~~~~~~~G~~~qv~ve~~~G~l~v~~ag~~a~L~vla~~ 98 (126)
T 3leq_A 19 VDHAVVLSEDGLVVSKSTGFLRDDAERLAATASGLMSLSKGVSMDFRRGPVRQALIEMGKGYLILTAAGPGAHLVVLTRQ 98 (126)
T ss_dssp EEEEEEEETTSCEEEECTTSCHHHHHHHHHHHHHHHHC-------------CEEEEECSSCEEEEEESSTTEEEEEEECT
T ss_pred ceEEEEEcCCCcEEEeeCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEeCCCEEEEEEeCCCcEEEEEeCC
Confidence 4678999999976666431121 112333333334333332 11 345788765 4444544557999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhc
Q 042402 73 QSNILEDLETLRLLSKLVPEYS 94 (523)
Q Consensus 73 n~n~~~~le~L~~l~~il~~y~ 94 (523)
+.|.-.+.--++++++-+.+++
T Consensus 99 ~a~lG~v~~em~~~v~ri~~~L 120 (126)
T 3leq_A 99 GADVGVVAYQMNMLVKKIGEHL 120 (126)
T ss_dssp TCCHHHHHHHHHHHHHHC----
T ss_pred CCCHHHHHHHHHHHHHHHHHhc
Confidence 9999988888888887776655
No 30
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}
Probab=21.04 E-value=2.1e+02 Score=24.58 Aligned_cols=36 Identities=11% Similarity=0.318 Sum_probs=26.1
Q ss_pred EecCCCCCCCCeEEeecceEEEECCCCEEEEEEceecCCC
Q 042402 421 SVPLPALREAPSVRQIDGEWRYDSRNSVLEWTILLIDNSN 460 (523)
Q Consensus 421 ~iPlP~~~~~~~~~~~~G~~~~~~~~~~l~W~I~~i~~~~ 460 (523)
++++|. +.+....+++.||.++..+.-++++...++
T Consensus 50 RL~LP~----~V~e~~~~kA~YD~d~~~~~VtLpK~~~Ge 85 (134)
T 2k8q_A 50 RLRFPH----ELIDDERSTAQYDSKDECINVKVAKLNKNE 85 (134)
T ss_dssp EECCSS----CEECCSSCEEEEETTTTEEEEEEEESSTTC
T ss_pred EecCCC----eeecCCCcceeEeccCCEEEEEEeCCCCCC
Confidence 555555 333455678999999999999999876533
Done!