Query 042404
Match_columns 311
No_of_seqs 143 out of 2039
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 05:54:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042404.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042404hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00579 FBD domain in FBox 99.5 3.2E-14 6.8E-19 96.5 7.5 71 239-309 2-72 (72)
2 PF08387 FBD: FBD; InterPro: 99.3 4.3E-12 9.4E-17 79.2 4.2 49 230-278 1-50 (51)
3 PLN00113 leucine-rich repeat r 99.1 9.6E-11 2.1E-15 118.2 6.7 107 17-124 108-223 (968)
4 PLN00113 leucine-rich repeat r 99.1 1.6E-10 3.5E-15 116.6 5.5 16 266-281 400-415 (968)
5 cd00116 LRR_RI Leucine-rich re 98.7 1.1E-08 2.3E-13 90.1 3.3 256 22-295 19-303 (319)
6 KOG4194 Membrane glycoprotein 98.7 4E-10 8.8E-15 101.9 -6.0 247 2-271 174-470 (873)
7 KOG2120 SCF ubiquitin ligase, 98.7 1.2E-09 2.5E-14 91.4 -3.5 168 22-210 206-391 (419)
8 PLN03210 Resistant to P. syrin 98.6 6E-08 1.3E-12 99.2 6.2 105 16-123 602-714 (1153)
9 KOG4194 Membrane glycoprotein 98.5 6.5E-08 1.4E-12 87.9 2.2 183 2-203 270-465 (873)
10 cd00116 LRR_RI Leucine-rich re 98.5 1.8E-08 3.9E-13 88.7 -1.4 261 2-280 24-317 (319)
11 KOG3207 Beta-tubulin folding c 98.4 2.5E-08 5.5E-13 87.5 -1.5 102 24-125 170-283 (505)
12 PLN03210 Resistant to P. syrin 98.3 3.9E-07 8.4E-12 93.4 4.4 104 17-123 579-691 (1153)
13 KOG0444 Cytoskeletal regulator 98.1 4.6E-08 9.9E-13 89.7 -6.9 181 16-220 93-305 (1255)
14 KOG2120 SCF ubiquitin ligase, 98.1 4.1E-07 9E-12 76.4 -1.6 142 1-153 234-392 (419)
15 KOG3207 Beta-tubulin folding c 98.1 2.1E-07 4.5E-12 81.9 -3.7 102 23-124 118-233 (505)
16 PF14580 LRR_9: Leucine-rich r 98.0 8.2E-07 1.8E-11 70.5 -0.2 78 3-84 21-99 (175)
17 KOG0617 Ras suppressor protein 98.0 1E-07 2.2E-12 73.9 -6.3 159 20-219 27-186 (264)
18 KOG1909 Ran GTPase-activating 97.9 4.2E-06 9E-11 71.8 1.9 189 20-217 52-281 (382)
19 KOG0444 Cytoskeletal regulator 97.8 1E-07 2.2E-12 87.5 -9.7 202 3-217 128-350 (1255)
20 KOG2982 Uncharacterized conser 97.8 3.6E-06 7.8E-11 70.9 -0.3 186 2-218 72-261 (418)
21 KOG4341 F-box protein containi 97.8 2.8E-06 6.1E-11 74.5 -1.3 263 3-281 140-437 (483)
22 KOG0618 Serine/threonine phosp 97.7 4E-07 8.6E-12 86.9 -7.9 168 26-217 241-441 (1081)
23 PF13855 LRR_8: Leucine rich r 97.7 7.6E-06 1.6E-10 53.2 0.3 35 24-58 23-59 (61)
24 PRK15370 E3 ubiquitin-protein 97.7 6.1E-05 1.3E-09 73.3 6.1 103 15-125 190-295 (754)
25 PRK15370 E3 ubiquitin-protein 97.7 2.5E-05 5.4E-10 76.0 2.5 62 148-219 367-428 (754)
26 KOG0617 Ras suppressor protein 97.6 2.2E-06 4.9E-11 66.5 -4.3 69 14-84 44-113 (264)
27 KOG4237 Extracellular matrix p 97.6 2.1E-05 4.4E-10 68.8 0.8 56 5-62 71-130 (498)
28 KOG3665 ZYG-1-like serine/thre 97.5 3E-05 6.5E-10 74.7 1.5 199 48-278 60-283 (699)
29 PF14580 LRR_9: Leucine-rich r 97.5 1.1E-05 2.4E-10 64.1 -2.1 78 22-102 15-97 (175)
30 KOG1909 Ran GTPase-activating 97.5 0.00015 3.1E-09 62.6 4.2 97 176-281 184-281 (382)
31 PRK15387 E3 ubiquitin-protein 97.4 0.00037 8E-09 67.9 7.3 100 15-124 213-313 (788)
32 PF13855 LRR_8: Leucine rich r 97.4 0.00012 2.6E-09 47.4 2.7 58 26-84 1-60 (61)
33 KOG0618 Serine/threonine phosp 97.3 4E-05 8.7E-10 73.7 -0.3 123 2-126 242-420 (1081)
34 KOG3665 ZYG-1-like serine/thre 97.2 6E-05 1.3E-09 72.6 -0.5 60 26-85 122-185 (699)
35 PRK15387 E3 ubiquitin-protein 97.1 0.00045 9.7E-09 67.3 3.8 70 26-102 282-351 (788)
36 PF07723 LRR_2: Leucine Rich R 97.0 0.00097 2.1E-08 34.9 2.9 25 49-73 1-26 (26)
37 PLN03150 hypothetical protein; 97.0 0.00043 9.4E-09 66.6 2.6 56 28-84 420-477 (623)
38 KOG4341 F-box protein containi 97.0 1.3E-05 2.8E-10 70.5 -7.0 99 26-124 138-253 (483)
39 KOG0472 Leucine-rich repeat pr 97.0 4.6E-06 1E-10 73.0 -9.7 178 15-218 126-309 (565)
40 PF12799 LRR_4: Leucine Rich r 96.8 0.00059 1.3E-08 40.9 1.1 35 27-61 2-37 (44)
41 KOG1259 Nischarin, modulator o 96.6 0.00019 4.2E-09 60.8 -2.4 180 16-218 204-411 (490)
42 KOG4237 Extracellular matrix p 96.4 0.00062 1.4E-08 59.8 -0.8 66 14-82 57-124 (498)
43 KOG0472 Leucine-rich repeat pr 96.2 0.00089 1.9E-08 59.1 -0.7 246 3-282 254-540 (565)
44 KOG1644 U2-associated snRNP A' 96.0 0.0093 2E-07 47.9 3.9 97 26-125 42-152 (233)
45 PLN03150 hypothetical protein; 95.9 0.0053 1.2E-07 59.2 2.9 81 3-85 420-502 (623)
46 KOG2982 Uncharacterized conser 95.9 0.0056 1.2E-07 52.1 2.4 101 24-124 43-157 (418)
47 PF12799 LRR_4: Leucine Rich r 95.8 0.0028 6.1E-08 37.9 0.2 38 1-40 1-38 (44)
48 KOG1859 Leucine-rich repeat pr 95.4 0.00078 1.7E-08 63.7 -4.6 99 48-159 187-290 (1096)
49 COG4886 Leucine-rich repeat (L 95.1 0.0079 1.7E-07 54.6 0.8 101 21-123 111-219 (394)
50 KOG2123 Uncharacterized conser 94.9 0.00084 1.8E-08 56.4 -5.5 13 200-212 111-123 (388)
51 KOG1644 U2-associated snRNP A' 94.9 0.034 7.4E-07 44.8 3.7 77 25-102 63-149 (233)
52 KOG1259 Nischarin, modulator o 94.8 0.0017 3.7E-08 55.3 -3.9 53 27-82 285-338 (490)
53 KOG1947 Leucine rich repeat pr 94.4 0.012 2.7E-07 54.6 0.3 101 25-125 187-307 (482)
54 KOG1947 Leucine rich repeat pr 94.1 0.017 3.8E-07 53.6 0.5 102 20-122 208-330 (482)
55 COG4886 Leucine-rich repeat (L 93.8 0.017 3.7E-07 52.5 0.0 149 15-184 128-284 (394)
56 KOG4658 Apoptotic ATPase [Sign 93.5 0.094 2E-06 52.5 4.4 122 26-158 523-652 (889)
57 KOG2739 Leucine-rich acidic nu 93.1 0.021 4.6E-07 47.6 -0.6 66 18-84 35-102 (260)
58 COG5238 RNA1 Ran GTPase-activa 92.6 0.079 1.7E-06 44.8 2.0 41 44-84 88-131 (388)
59 KOG4658 Apoptotic ATPase [Sign 92.4 0.026 5.7E-07 56.3 -1.1 85 17-103 561-652 (889)
60 PRK15386 type III secretion pr 92.3 0.23 5E-06 45.0 4.8 90 23-121 49-140 (426)
61 KOG2739 Leucine-rich acidic nu 89.3 0.19 4E-06 42.1 1.3 61 24-85 63-128 (260)
62 KOG2123 Uncharacterized conser 89.2 0.069 1.5E-06 45.3 -1.3 60 24-83 39-98 (388)
63 PF00560 LRR_1: Leucine Rich R 89.1 0.25 5.3E-06 24.5 1.2 13 27-39 1-13 (22)
64 KOG3864 Uncharacterized conser 87.8 0.059 1.3E-06 43.4 -2.4 72 51-123 104-186 (221)
65 KOG0531 Protein phosphatase 1, 86.1 0.26 5.6E-06 45.2 0.4 101 21-125 90-198 (414)
66 KOG0531 Protein phosphatase 1, 85.9 0.13 2.7E-06 47.2 -1.8 100 24-125 70-174 (414)
67 PF13516 LRR_6: Leucine Rich r 85.8 0.51 1.1E-05 23.8 1.3 21 47-67 1-21 (24)
68 smart00367 LRR_CC Leucine-rich 85.4 0.4 8.6E-06 24.8 0.7 15 72-86 1-15 (26)
69 KOG3864 Uncharacterized conser 82.4 0.32 7E-06 39.3 -0.6 87 16-102 91-185 (221)
70 KOG1859 Leucine-rich repeat pr 81.1 0.17 3.7E-06 48.6 -2.9 40 21-61 204-245 (1096)
71 PF08387 FBD: FBD; InterPro: 80.9 3.7 8E-05 25.2 3.9 38 176-214 13-50 (51)
72 PRK15386 type III secretion pr 80.8 1.8 4E-05 39.3 3.5 10 206-215 177-186 (426)
73 PF13504 LRR_7: Leucine rich r 79.0 1.4 3E-05 20.2 1.2 13 27-39 2-14 (17)
74 KOG0532 Leucine-rich repeat (L 78.9 0.097 2.1E-06 48.7 -5.1 66 17-85 112-178 (722)
75 smart00579 FBD domain in FBox 74.6 8 0.00017 25.5 4.5 41 176-217 4-44 (72)
76 COG5238 RNA1 Ran GTPase-activa 74.0 12 0.00026 32.1 6.2 71 203-282 154-226 (388)
77 KOG0532 Leucine-rich repeat (L 68.1 0.098 2.1E-06 48.7 -7.8 107 17-125 66-178 (722)
78 smart00368 LRR_RI Leucine rich 66.8 5.1 0.00011 21.0 1.7 20 48-67 2-21 (28)
79 KOG4579 Leucine-rich repeat (L 66.3 0.85 1.8E-05 34.8 -1.9 76 22-100 49-127 (177)
80 KOG4579 Leucine-rich repeat (L 65.1 1.3 2.8E-05 33.8 -1.1 72 30-102 31-109 (177)
81 smart00370 LRR Leucine-rich re 48.3 16 0.00035 18.4 1.7 14 26-39 2-15 (26)
82 smart00369 LRR_TYP Leucine-ric 48.3 16 0.00035 18.4 1.7 14 26-39 2-15 (26)
83 KOG4308 LRR-containing protein 44.2 0.23 4.9E-06 46.3 -9.9 38 28-65 89-132 (478)
84 PF13306 LRR_5: Leucine rich r 30.3 31 0.00067 25.2 1.4 62 18-81 3-66 (129)
85 smart00365 LRR_SD22 Leucine-ri 27.6 35 0.00075 17.6 0.9 13 48-60 2-14 (26)
86 smart00446 LRRcap occurring C- 20.7 60 0.0013 16.8 1.0 16 67-82 7-22 (26)
No 1
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=99.53 E-value=3.2e-14 Score=96.55 Aligned_cols=71 Identities=30% Similarity=0.562 Sum_probs=64.3
Q ss_pred ccccceeEEEEEeecCCcchHHHHHHHHccCcccceEEEEeccccchhHHHHHHHHhhcccCCcccEEEEe
Q 042404 239 CSFKQLKLVKMTDISGVPHEMELIKFLLSNSPVLEIMSITPCTFVTERKVNMLIELVRFIRASPRAEIIFI 309 (311)
Q Consensus 239 ~~~~~Lk~v~i~~~~g~~~~~~l~~~ll~~a~~Le~l~i~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~ 309 (311)
|..++|+.|+|.+|.|.+.|+++++||++||+.||+|+|..+....++..++.++|..++|||+.|+|.|.
T Consensus 2 cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~~~~~i~~~L~~~~~aS~~c~i~~~ 72 (72)
T smart00579 2 CLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDDEKLEILKELLSLPRASSSCQVQFL 72 (72)
T ss_pred cchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCccHHHHHHHHHHhCcCCCCceEEEeC
Confidence 67789999999999999999999999999999999999998765445557788999999999999999984
No 2
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=99.28 E-value=4.3e-12 Score=79.23 Aligned_cols=49 Identities=37% Similarity=0.800 Sum_probs=44.7
Q ss_pred hh-cccccCcccccceeEEEEEeecCCcchHHHHHHHHccCcccceEEEE
Q 042404 230 FW-EKECHADCSFKQLKLVKMTDISGVPHEMELIKFLLSNSPVLEIMSIT 278 (311)
Q Consensus 230 ~~-~~~~~~~~~~~~Lk~v~i~~~~g~~~~~~l~~~ll~~a~~Le~l~i~ 278 (311)
+| +...+|+|..+|||.|++.||.|.+.|+++++||++||+.||+|+|.
T Consensus 1 ~W~~~~~~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 1 FWIEPSSVPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred CCCCCCCCccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 47 34456899999999999999999999999999999999999999996
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.11 E-value=9.6e-11 Score=118.22 Aligned_cols=107 Identities=21% Similarity=0.217 Sum_probs=52.9
Q ss_pred ecCCCcc-cCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccccee----EEEe
Q 042404 17 RVPSCLF-NCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLD----LNIC 91 (311)
Q Consensus 17 ~lp~~~~-~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~----~~i~ 91 (311)
.+|..++ .+++|++|+|++|.+........+++|++|+|+++.+... ++..+..+++|+.|++.+|.... ....
T Consensus 108 ~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 186 (968)
T PLN00113 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN 186 (968)
T ss_pred cCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCccccc-CChHHhcCCCCCEEECccCcccccCChhhhh
Confidence 3454444 5555666666555543111123455666666666655432 33335566666666666664322 1123
Q ss_pred CCCceEEEeecee-e-e--eeecCCCCcceeEEEEEE
Q 042404 92 APELKYLYLEGEF-K-D--IHLESTPLLVSMSIAMYM 124 (311)
Q Consensus 92 ~~~L~~L~i~~~~-~-~--~~i~~~p~L~~l~l~~~~ 124 (311)
.++|++|.+.++. . . -.+..+++|+.++++.+.
T Consensus 187 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223 (968)
T ss_pred CcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence 3556666665542 1 1 123355566666655443
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.05 E-value=1.6e-10 Score=116.59 Aligned_cols=16 Identities=13% Similarity=0.158 Sum_probs=11.0
Q ss_pred HccCcccceEEEEecc
Q 042404 266 LSNSPVLEIMSITPCT 281 (311)
Q Consensus 266 l~~a~~Le~l~i~~~~ 281 (311)
+.+.+.|+.+.+....
T Consensus 400 ~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 400 LGACRSLRRVRLQDNS 415 (968)
T ss_pred HhCCCCCCEEECcCCE
Confidence 3567888888876543
No 5
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.68 E-value=1.1e-08 Score=90.09 Aligned_cols=256 Identities=16% Similarity=0.077 Sum_probs=150.8
Q ss_pred cccCCCCcEEEccceeeCC------CCCCCCCCcccEEEeeeeeeC--hH---HHHHHHhcCcccccccccccccee---
Q 042404 22 LFNCRKLTRLELFRCEFDP------PLTFTGFPCLRSLNLHQVLVA--PE---AIESLISSCPLLESLSLSYFDSLD--- 87 (311)
Q Consensus 22 ~~~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~~~--~~---~l~~ll~~cp~Le~L~l~~c~~~~--- 87 (311)
+.....|++|++.++.+.. +..+..++.|++|.+.++.+. .. .+...+..+++|+.|++.+|....
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 3445669999999988742 223446778999999888766 22 344556678899999999886531
Q ss_pred -----EEEeCCCceEEEeece-eee-----e--eecCC-CCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEE
Q 042404 88 -----LNICAPELKYLYLEGE-FKD-----I--HLEST-PLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKL 153 (311)
Q Consensus 88 -----~~i~~~~L~~L~i~~~-~~~-----~--~i~~~-p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L 153 (311)
+.-. ++|++|.+.++ +.. + .+... ++|++++++.+...+. ....+...+..++.++.|
T Consensus 99 ~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-------~~~~~~~~~~~~~~L~~L 170 (319)
T cd00116 99 GVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA-------SCEALAKALRANRDLKEL 170 (319)
T ss_pred HHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch-------HHHHHHHHHHhCCCcCEE
Confidence 1112 66999999885 221 1 23345 8899999988764320 112335556777889999
Q ss_pred EEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccCCcccccCCCchhhcc
Q 042404 154 VGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSNTLAAIEAPDLDFWEK 233 (311)
Q Consensus 154 ~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~ 233 (311)
++..+.+..-.....+..+ ..+++|++|.+....+. ..+...+...+..+|+|+.|++..+..... .......
T Consensus 171 ~l~~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~i~-~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~-----~~~~l~~ 243 (319)
T cd00116 171 NLANNGIGDAGIRALAEGL-KANCNLEVLDLNNNGLT-DEGASALAETLASLKSLEVLNLGDNNLTDA-----GAAALAS 243 (319)
T ss_pred ECcCCCCchHHHHHHHHHH-HhCCCCCEEeccCCccC-hHHHHHHHHHhcccCCCCEEecCCCcCchH-----HHHHHHH
Confidence 9987654320000001111 13468999998433232 234556777788899999999987643210 0000000
Q ss_pred cccCcccccceeEEEEEeecCC-cchHHHHHHHHccCcccceEEEEeccccchhHHHHHHHHh
Q 042404 234 ECHADCSFKQLKLVKMTDISGV-PHEMELIKFLLSNSPVLEIMSITPCTFVTERKVNMLIELV 295 (311)
Q Consensus 234 ~~~~~~~~~~Lk~v~i~~~~g~-~~~~~l~~~ll~~a~~Le~l~i~~~~~~~~~~~~~~~~l~ 295 (311)
. .......|+.+.+.+..-. .....+++. +.+.+.|+.+.+.....+.++..+..+.+.
T Consensus 244 -~-~~~~~~~L~~L~l~~n~i~~~~~~~l~~~-~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~ 303 (319)
T cd00116 244 -A-LLSPNISLLTLSLSCNDITDDGAKDLAEV-LAEKESLLELDLRGNKFGEEGAQLLAESLL 303 (319)
T ss_pred -H-HhccCCCceEEEccCCCCCcHHHHHHHHH-HhcCCCccEEECCCCCCcHHHHHHHHHHHh
Confidence 0 0002367888887764322 222344444 444488999888877655554444444444
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.67 E-value=4e-10 Score=101.89 Aligned_cols=247 Identities=17% Similarity=0.139 Sum_probs=123.1
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChH-HHHHHHhcCcccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPE-AIESLISSCPLLESL 78 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L 78 (311)
++++|+|...++..... .++.+..+|..|+|+.|+++ ++..|..+|.|+.|+|..+.+.-- .+. +.+.|.|+.|
T Consensus 174 ni~~L~La~N~It~l~~-~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~lt--FqgL~Sl~nl 250 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLET-GHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT--FQGLPSLQNL 250 (873)
T ss_pred CceEEeecccccccccc-ccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhh--hcCchhhhhh
Confidence 67888887665421221 23445568888888888876 233566688888888888776431 121 4466666666
Q ss_pred cccccccee----EEE------------------------eCCCceEEEeece-eeeeee---cCCCCcceeEEEEEEcc
Q 042404 79 SLSYFDSLD----LNI------------------------CAPELKYLYLEGE-FKDIHL---ESTPLLVSMSIAMYMTD 126 (311)
Q Consensus 79 ~l~~c~~~~----~~i------------------------~~~~L~~L~i~~~-~~~~~i---~~~p~L~~l~l~~~~~~ 126 (311)
.+..++..+ ..- ...+|+.|.++.+ ..+|.+ ..+++|+.++++.+...
T Consensus 251 klqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 251 KLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred hhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence 666543211 111 1224455554442 122222 35777777777776655
Q ss_pred ccchh-hc-----------ccccch-HHHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHH
Q 042404 127 DIAEH-FE-----------QSSSCN-FLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMK 193 (311)
Q Consensus 127 ~~~~~-~~-----------~~~~~~-~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~ 193 (311)
++++. +. ...... -..-+.++++|+.|+|+.+.+.+...+ .- ....-+++|+.|.+.+.....
T Consensus 331 ~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED-aa-~~f~gl~~LrkL~l~gNqlk~-- 406 (873)
T KOG4194|consen 331 RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED-AA-VAFNGLPSLRKLRLTGNQLKS-- 406 (873)
T ss_pred cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec-ch-hhhccchhhhheeecCceeee--
Confidence 44321 10 000000 122345566677777776665432211 10 011125566666663211111
Q ss_pred HHHHHHHHHhcCCCcceEEEEeccCCcccccCCCchhhcccccCcccccceeEEEEEe--ecCCcchHHHHHHHHccCcc
Q 042404 194 EILVVIRLITNSPNLKELHISGSSNTLAAIEAPDLDFWEKECHADCSFKQLKLVKMTD--ISGVPHEMELIKFLLSNSPV 271 (311)
Q Consensus 194 ~~~~l~~~l~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~v~i~~--~~g~~~~~~l~~~ll~~a~~ 271 (311)
.-..-+..++.||.|++..+.-... +. ..+..-+||++.|.. |-.+++-.=++..+.++-..
T Consensus 407 ---I~krAfsgl~~LE~LdL~~NaiaSI----------q~---nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq 470 (873)
T KOG4194|consen 407 ---IPKRAFSGLEALEHLDLGDNAIASI----------QP---NAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRKLQ 470 (873)
T ss_pred ---cchhhhccCcccceecCCCCcceee----------cc---cccccchhhhhhhcccceEEeccHHHHHHHHHhcccc
Confidence 1123456677777777764432111 00 011122667666653 44555544455566555433
No 7
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.2e-09 Score=91.40 Aligned_cols=168 Identities=23% Similarity=0.262 Sum_probs=118.8
Q ss_pred cccCCCCcEEEccceeeCCCC--CCCCCCcccEEEeeeee-eChHHHHHHHhcCcccccccccccccee------EEEeC
Q 042404 22 LFNCRKLTRLELFRCEFDPPL--TFTGFPCLRSLNLHQVL-VAPEAIESLISSCPLLESLSLSYFDSLD------LNICA 92 (311)
Q Consensus 22 ~~~~~~L~~L~L~~~~l~~~~--~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~------~~i~~ 92 (311)
+..|++|+.|.|.++.+.+|- .++.-.+|+.|+|+.+. ++...+.-++++|..|.+|.|+.|.... +.--+
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his 285 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS 285 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence 456889999999999887643 24566889999999887 7777899999999999999999998654 22345
Q ss_pred CCceEEEeeceeee-----e--eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEEeec
Q 042404 93 PELKYLYLEGEFKD-----I--HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYLSI 165 (311)
Q Consensus 93 ~~L~~L~i~~~~~~-----~--~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~ 165 (311)
++|+.|++.|+... + -...+|+|.+++++++.... ......+.+++.|+.|+++-+..
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~----------~~~~~~~~kf~~L~~lSlsRCY~----- 350 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK----------NDCFQEFFKFNYLQHLSLSRCYD----- 350 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC----------chHHHHHHhcchheeeehhhhcC-----
Confidence 89999999997322 1 13479999999999876542 23344556889999999874421
Q ss_pred CCCCCCC--CccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcce
Q 042404 166 GDDPGRL--PITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKE 210 (311)
Q Consensus 166 ~~~~~~~--~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~ 210 (311)
..|..+ ....|.|..|.+.+. ..+. .+.-+.+.||+|+.
T Consensus 351 -i~p~~~~~l~s~psl~yLdv~g~-vsdt----~mel~~e~~~~lki 391 (419)
T KOG2120|consen 351 -IIPETLLELNSKPSLVYLDVFGC-VSDT----TMELLKEMLSHLKI 391 (419)
T ss_pred -CChHHeeeeccCcceEEEEeccc-cCch----HHHHHHHhCccccc
Confidence 111111 123577888888432 2221 44567788998763
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.60 E-value=6e-08 Score=99.21 Aligned_cols=105 Identities=20% Similarity=0.149 Sum_probs=50.8
Q ss_pred eecCCCcccCCCCcEEEccceeeC-CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccccee-EE---E
Q 042404 16 FRVPSCLFNCRKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLD-LN---I 90 (311)
Q Consensus 16 ~~lp~~~~~~~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~-~~---i 90 (311)
..+|..+ ...+|+.|+|.++.+. .|.+...+++|+.|+|+++..-.. ++. ++.+++|+.|++.+|..+. +. -
T Consensus 602 ~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~-ip~-ls~l~~Le~L~L~~c~~L~~lp~si~ 678 (1153)
T PLN03210 602 RCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKE-IPD-LSMATNLETLKLSDCSSLVELPSSIQ 678 (1153)
T ss_pred CCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCc-CCc-cccCCcccEEEecCCCCccccchhhh
Confidence 3455543 4466666666666554 334445566666666665431111 111 3456666666666665433 11 1
Q ss_pred eCCCceEEEeecee--eeeee-cCCCCcceeEEEEE
Q 042404 91 CAPELKYLYLEGEF--KDIHL-ESTPLLVSMSIAMY 123 (311)
Q Consensus 91 ~~~~L~~L~i~~~~--~~~~i-~~~p~L~~l~l~~~ 123 (311)
..++|+.|.+.+|. ..+.. ..+++|+.+.++++
T Consensus 679 ~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc 714 (1153)
T PLN03210 679 YLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGC 714 (1153)
T ss_pred ccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCC
Confidence 23455666665542 11111 14455555555443
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.47 E-value=6.5e-08 Score=87.95 Aligned_cols=183 Identities=16% Similarity=0.085 Sum_probs=108.9
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLS 79 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 79 (311)
++|+|+|+..+.. ..--.+++..+.|+.|+|++|.+. .+.++..++.|+.|+|+++.++.-+-+ -+.....||.|.
T Consensus 270 kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~-sf~~L~~Le~Ln 347 (873)
T KOG4194|consen 270 KMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG-SFRVLSQLEELN 347 (873)
T ss_pred ccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChh-HHHHHHHhhhhc
Confidence 5667777665431 122356777888888888887664 244566677888888888776542122 144567778888
Q ss_pred ccccccee----EEEeCCCceEEEeeceeee-------eeecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCC
Q 042404 80 LSYFDSLD----LNICAPELKYLYLEGEFKD-------IHLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVP 148 (311)
Q Consensus 80 l~~c~~~~----~~i~~~~L~~L~i~~~~~~-------~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 148 (311)
|..+..-. ......+|+.|++..+--. ..+..+|+|+++.+.++....+ -.+-+.+++
T Consensus 348 Ls~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I-----------~krAfsgl~ 416 (873)
T KOG4194|consen 348 LSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI-----------PKRAFSGLE 416 (873)
T ss_pred ccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec-----------chhhhccCc
Confidence 77665321 2223346777777664222 2345688888888887765422 134467888
Q ss_pred cceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHh
Q 042404 149 HLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLIT 203 (311)
Q Consensus 149 ~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~ 203 (311)
.|+.|+|..+.+-.+.... .. ++ +|++|.+...++--.-.+.+++..+.
T Consensus 417 ~LE~LdL~~NaiaSIq~nA----Fe-~m-~Lk~Lv~nSssflCDCql~Wl~qWl~ 465 (873)
T KOG4194|consen 417 ALEHLDLGDNAIASIQPNA----FE-PM-ELKELVMNSSSFLCDCQLKWLAQWLY 465 (873)
T ss_pred ccceecCCCCcceeecccc----cc-cc-hhhhhhhcccceEEeccHHHHHHHHH
Confidence 9999999888776654322 22 22 67777774333221124456655554
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.46 E-value=1.8e-08 Score=88.68 Aligned_cols=261 Identities=20% Similarity=0.071 Sum_probs=152.6
Q ss_pred CceEEEEEeCCC---eeeecCCCcccCCCCcEEEccceeeCC-C-------CCCCCCCcccEEEeeeeeeCh---HHHHH
Q 042404 2 DIRELVLELGEG---EWFRVPSCLFNCRKLTRLELFRCEFDP-P-------LTFTGFPCLRSLNLHQVLVAP---EAIES 67 (311)
Q Consensus 2 ~v~~L~l~~~~~---~~~~lp~~~~~~~~L~~L~L~~~~l~~-~-------~~~~~l~~L~~L~L~~~~~~~---~~l~~ 67 (311)
++++|++.-+.. ....++..+...++|+.|+++++.+.. + ..+..+++|+.|+++++.+.. ..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 367777764432 123466667777889999998876541 1 224457799999999888764 23444
Q ss_pred HHhcCcccccccccccccee-----E---EEeC-CCceEEEeecee-e-----ee--eecCCCCcceeEEEEEEccccch
Q 042404 68 LISSCPLLESLSLSYFDSLD-----L---NICA-PELKYLYLEGEF-K-----DI--HLESTPLLVSMSIAMYMTDDIAE 130 (311)
Q Consensus 68 ll~~cp~Le~L~l~~c~~~~-----~---~i~~-~~L~~L~i~~~~-~-----~~--~i~~~p~L~~l~l~~~~~~~~~~ 130 (311)
+..+ ++|++|++.+|...+ + .... ++|+.|.+.++. . .+ .+..+++|+.++++.+...+.
T Consensus 104 l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-- 180 (319)
T cd00116 104 LLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA-- 180 (319)
T ss_pred Hhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH--
Confidence 4444 669999998886431 1 1122 788999998862 2 11 234567899998877654310
Q ss_pred hhcccccchHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHH-hcCCCcc
Q 042404 131 HFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLI-TNSPNLK 209 (311)
Q Consensus 131 ~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l-~~~p~L~ 209 (311)
....+...+...++|+.|++..+.+.......... ....+++|++|.+....+.+ .++..+...+ ...+.|+
T Consensus 181 -----~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-~~~~~~~L~~L~ls~n~l~~-~~~~~l~~~~~~~~~~L~ 253 (319)
T cd00116 181 -----GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE-TLASLKSLEVLNLGDNNLTD-AGAAALASALLSPNISLL 253 (319)
T ss_pred -----HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH-HhcccCCCCEEecCCCcCch-HHHHHHHHHHhccCCCce
Confidence 00122333456679999999877654221111111 12247889999984322222 1222333222 2358999
Q ss_pred eEEEEeccCCcccccCCCchhhcccccCcccccceeEEEEEeec-CCcchHHHHHHHHccCcccceEEEEec
Q 042404 210 ELHISGSSNTLAAIEAPDLDFWEKECHADCSFKQLKLVKMTDIS-GVPHEMELIKFLLSNSPVLEIMSITPC 280 (311)
Q Consensus 210 ~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~v~i~~~~-g~~~~~~l~~~ll~~a~~Le~l~i~~~ 280 (311)
.|++..+..... .........+ .+.+|+.+.+.+-. +.+....+++-+..+.+.|+.+.|...
T Consensus 254 ~L~l~~n~i~~~-------~~~~l~~~~~-~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 254 TLSLSCNDITDD-------GAKDLAEVLA-EKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred EEEccCCCCCcH-------HHHHHHHHHh-cCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 999987753211 1100000011 13678887776532 334457788888889899999887643
No 11
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=2.5e-08 Score=87.48 Aligned_cols=102 Identities=17% Similarity=0.168 Sum_probs=71.6
Q ss_pred cCCCCcEEEccceeeCCCCC---CCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeEEEe----CCCce
Q 042404 24 NCRKLTRLELFRCEFDPPLT---FTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDLNIC----APELK 96 (311)
Q Consensus 24 ~~~~L~~L~L~~~~l~~~~~---~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~i~----~~~L~ 96 (311)
.+++|+.|+|+.|.+..|.+ ...+++|++|.|..|.+++.++..++..||.|+.|.+.++....+... ..+|+
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ 249 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence 35788888898888764432 236899999999999999999999999999999999998853221111 23677
Q ss_pred EEEeece----eeee-eecCCCCcceeEEEEEEc
Q 042404 97 YLYLEGE----FKDI-HLESTPLLVSMSIAMYMT 125 (311)
Q Consensus 97 ~L~i~~~----~~~~-~i~~~p~L~~l~l~~~~~ 125 (311)
.|++.++ ++.. .+...|.|..+.++.+..
T Consensus 250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi 283 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGI 283 (505)
T ss_pred hccccCCcccccccccccccccchhhhhccccCc
Confidence 7777763 2222 234666666666655544
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.33 E-value=3.9e-07 Score=93.37 Aligned_cols=104 Identities=16% Similarity=0.098 Sum_probs=47.1
Q ss_pred ecCCCcccC-CCCcEEEccceeeC-CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccccee---EEEe
Q 042404 17 RVPSCLFNC-RKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLD---LNIC 91 (311)
Q Consensus 17 ~lp~~~~~~-~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~---~~i~ 91 (311)
.+|..+... .+|+.|.+.++.+. .|..+ .+.+|+.|++.++.+.. ++.-+..+++|+.|++.+|..+. -...
T Consensus 579 ~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~--L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~ 655 (1153)
T PLN03210 579 HLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEK--LWDGVHSLTGLRNIDLRGSKNLKEIPDLSM 655 (1153)
T ss_pred ecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccc--cccccccCCCCCEEECCCCCCcCcCCcccc
Confidence 344444443 24555555555443 23333 34555555555554332 21223345555666555554332 1112
Q ss_pred CCCceEEEeeceee--e--eeecCCCCcceeEEEEE
Q 042404 92 APELKYLYLEGEFK--D--IHLESTPLLVSMSIAMY 123 (311)
Q Consensus 92 ~~~L~~L~i~~~~~--~--~~i~~~p~L~~l~l~~~ 123 (311)
.++|+.|.+.+|.. . ..+..+++|+.+++..+
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence 34555555555421 1 12334555555555443
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.12 E-value=4.6e-08 Score=89.72 Aligned_cols=181 Identities=17% Similarity=0.150 Sum_probs=103.9
Q ss_pred eecCCCcccCCCCcEEEccceeeC-CCCCCCCCCcccEEEeeeeeeChH----------------------HHHHHHhcC
Q 042404 16 FRVPSCLFNCRKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVLVAPE----------------------AIESLISSC 72 (311)
Q Consensus 16 ~~lp~~~~~~~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~----------------------~l~~ll~~c 72 (311)
..+|..++.+.-|..|+|++|.+. .|..+..-.++-.|+|+++.++.- .++--+...
T Consensus 93 sGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL 172 (1255)
T KOG0444|consen 93 SGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRL 172 (1255)
T ss_pred CCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHH
Confidence 467777777777777777777764 454454555666777776665421 111113334
Q ss_pred cccccccccccccee--E--EEeCCCceEEEeecee---ee--eeecCCCCcceeEEEEEEccccchhhcccccchHHHH
Q 042404 73 PLLESLSLSYFDSLD--L--NICAPELKYLYLEGEF---KD--IHLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKI 143 (311)
Q Consensus 73 p~Le~L~l~~c~~~~--~--~i~~~~L~~L~i~~~~---~~--~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (311)
..|++|.|+++.-.. + -.+..+|..|.+++.. .. -++.++.+|..++++.+... .+.+.
T Consensus 173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp------------~vPec 240 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP------------IVPEC 240 (1255)
T ss_pred hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC------------cchHH
Confidence 445555555443211 1 1123455566666531 11 23556667777776665543 23555
Q ss_pred hcCCCcceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccCCc
Q 042404 144 LGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSNTL 220 (311)
Q Consensus 144 l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~~~ 220 (311)
+-.+++|++|.|+++.++.+..+. . .-.+|++|.+.. + .+..++.-+-+.|.|++|++..++...
T Consensus 241 ly~l~~LrrLNLS~N~iteL~~~~-----~-~W~~lEtLNlSr---N---QLt~LP~avcKL~kL~kLy~n~NkL~F 305 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITELNMTE-----G-EWENLETLNLSR---N---QLTVLPDAVCKLTKLTKLYANNNKLTF 305 (1255)
T ss_pred HhhhhhhheeccCcCceeeeeccH-----H-HHhhhhhhcccc---c---hhccchHHHhhhHHHHHHHhccCcccc
Confidence 667888999999988877655421 1 245666666622 1 233566667777788877777665443
No 14
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=4.1e-07 Score=76.41 Aligned_cols=142 Identities=23% Similarity=0.232 Sum_probs=98.6
Q ss_pred CCceEEEEEeCCC-eeeecCCCcccCCCCcEEEccceeeCCCCC---C-CCCCcccEEEeeeee--eChHHHHHHHhcCc
Q 042404 1 NDIRELVLELGEG-EWFRVPSCLFNCRKLTRLELFRCEFDPPLT---F-TGFPCLRSLNLHQVL--VAPEAIESLISSCP 73 (311)
Q Consensus 1 ~~v~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~l~~~~~---~-~~l~~L~~L~L~~~~--~~~~~l~~ll~~cp 73 (311)
+++++|+|.++.. ..+.+---+.+|+.|..|+|+.|.+..+.. . .--+.|+.|+|+++. +...++.-+...||
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp 313 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCP 313 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCC
Confidence 3677777776643 112222334578999999999887642211 1 124789999999886 55668888899999
Q ss_pred ccccccccccccee-----EEEeCCCceEEEeeceee-----eeeecCCCCcceeEEEEEEccccchhhcccccchHHHH
Q 042404 74 LLESLSLSYFDSLD-----LNICAPELKYLYLEGEFK-----DIHLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKI 143 (311)
Q Consensus 74 ~Le~L~l~~c~~~~-----~~i~~~~L~~L~i~~~~~-----~~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (311)
+|.+|+|++|..+. .....+.|+++.++.|+. -+.+..+|+|+++++.++..+. ++.-+
T Consensus 314 ~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt-----------~mel~ 382 (419)
T KOG2120|consen 314 NLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDT-----------TMELL 382 (419)
T ss_pred ceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCch-----------HHHHH
Confidence 99999999997654 334567899999999853 2567799999999998876542 33444
Q ss_pred hcCCCcceEE
Q 042404 144 LGGVPHLEKL 153 (311)
Q Consensus 144 l~~l~~l~~L 153 (311)
...+|+++.=
T Consensus 383 ~e~~~~lkin 392 (419)
T KOG2120|consen 383 KEMLSHLKIN 392 (419)
T ss_pred HHhCcccccc
Confidence 4566665543
No 15
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=2.1e-07 Score=81.86 Aligned_cols=102 Identities=22% Similarity=0.164 Sum_probs=78.5
Q ss_pred ccCCCCcEEEccceeeCCCC---CCCCCCcccEEEeeeeeeC-hHHHHHHHhcCcccccccccccccee-----EEEeCC
Q 042404 23 FNCRKLTRLELFRCEFDPPL---TFTGFPCLRSLNLHQVLVA-PEAIESLISSCPLLESLSLSYFDSLD-----LNICAP 93 (311)
Q Consensus 23 ~~~~~L~~L~L~~~~l~~~~---~~~~l~~L~~L~L~~~~~~-~~~l~~ll~~cp~Le~L~l~~c~~~~-----~~i~~~ 93 (311)
.+.++|+...|..+.+..+. ....|++++.|+|+.+-+. +..+.++....|+||.|.++.+.... ..-..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 34678999999998877544 3457999999999998864 57788888999999999999876322 444667
Q ss_pred CceEEEeece-eee----eeecCCCCcceeEEEEEE
Q 042404 94 ELKYLYLEGE-FKD----IHLESTPLLVSMSIAMYM 124 (311)
Q Consensus 94 ~L~~L~i~~~-~~~----~~i~~~p~L~~l~l~~~~ 124 (311)
+|+.|.+.+| +.. ......|+|+.+++..+.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc
Confidence 8999999987 332 123488999999998774
No 16
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.05 E-value=8.2e-07 Score=70.54 Aligned_cols=78 Identities=27% Similarity=0.296 Sum_probs=22.9
Q ss_pred ceEEEEEeCCCeeeecCCCcc-cCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccc
Q 042404 3 IRELVLELGEGEWFRVPSCLF-NCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLS 81 (311)
Q Consensus 3 v~~L~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 81 (311)
+++|+|+..... .+ ..+. .+.+|+.|+|++|.+....++..+++|++|.++++.++.-. +.+..+||+|++|.+.
T Consensus 21 ~~~L~L~~n~I~--~I-e~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 21 LRELNLRGNQIS--TI-ENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLS 96 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-T
T ss_pred cccccccccccc--cc-cchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECc
Confidence 455666555331 11 2344 35677788888877765556667778888888877765421 1223457777777777
Q ss_pred ccc
Q 042404 82 YFD 84 (311)
Q Consensus 82 ~c~ 84 (311)
++.
T Consensus 97 ~N~ 99 (175)
T PF14580_consen 97 NNK 99 (175)
T ss_dssp TS-
T ss_pred CCc
Confidence 654
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.98 E-value=1e-07 Score=73.87 Aligned_cols=159 Identities=22% Similarity=0.229 Sum_probs=104.6
Q ss_pred CCcccCCCCcEEEccceeeC-CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeEEEeCCCceEE
Q 042404 20 SCLFNCRKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDLNICAPELKYL 98 (311)
Q Consensus 20 ~~~~~~~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~i~~~~L~~L 98 (311)
+.++++++.++|.|+++.++ .|+.++.+.+|+.|+++++.+++ ++.-+++.|.|+.|.+...+-
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~--lp~~issl~klr~lnvgmnrl------------- 91 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGMNRL------------- 91 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecchhhh-------------
Confidence 34788899999999999886 56778899999999999997654 455577888888887774321
Q ss_pred EeeceeeeeeecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCccccc
Q 042404 99 YLEGEFKDIHLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNH 178 (311)
Q Consensus 99 ~i~~~~~~~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~ 178 (311)
. .....++..|.|+.+++.++...+. .+..-+-.+..++-|++..+..++ .|..++ ++.+
T Consensus 92 ~----~lprgfgs~p~levldltynnl~e~----------~lpgnff~m~tlralyl~dndfe~-----lp~dvg-~lt~ 151 (264)
T KOG0617|consen 92 N----ILPRGFGSFPALEVLDLTYNNLNEN----------SLPGNFFYMTTLRALYLGDNDFEI-----LPPDVG-KLTN 151 (264)
T ss_pred h----cCccccCCCchhhhhhccccccccc----------cCCcchhHHHHHHHHHhcCCCccc-----CChhhh-hhcc
Confidence 0 0112346788888888887765431 011112244556777776664443 233333 3555
Q ss_pred cceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccCC
Q 042404 179 LKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSNT 219 (311)
Q Consensus 179 L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~~ 219 (311)
|+-|.+ .-+ ++-.++.-++....|++|+|+++...
T Consensus 152 lqil~l---rdn---dll~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 152 LQILSL---RDN---DLLSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred eeEEee---ccC---chhhCcHHHHHHHHHHHHhcccceee
Confidence 555554 222 34577888888899999999987654
No 18
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.93 E-value=4.2e-06 Score=71.85 Aligned_cols=189 Identities=20% Similarity=0.261 Sum_probs=115.6
Q ss_pred CCcccCCCCcEEEccceeeC-----CCC-------CCCCCCcccEEEeeeeeeCh---HHHHHHHhcCcccccccccccc
Q 042404 20 SCLFNCRKLTRLELFRCEFD-----PPL-------TFTGFPCLRSLNLHQVLVAP---EAIESLISSCPLLESLSLSYFD 84 (311)
Q Consensus 20 ~~~~~~~~L~~L~L~~~~l~-----~~~-------~~~~l~~L~~L~L~~~~~~~---~~l~~ll~~cp~Le~L~l~~c~ 84 (311)
..+.+-+.|+.-+++..... .|+ ++..+|.|++|+|+.+.+.. +.+..++++|..|++|.|..|.
T Consensus 52 ~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 52 KVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred HHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 44455567777777754322 122 23467899999999999875 4678889999999999999996
Q ss_pred cee-----------------EEEeCCCceEEEeece-eee-------eeecCCCCcceeEEEEEEccccchhhcccccch
Q 042404 85 SLD-----------------LNICAPELKYLYLEGE-FKD-------IHLESTPLLVSMSIAMYMTDDIAEHFEQSSSCN 139 (311)
Q Consensus 85 ~~~-----------------~~i~~~~L~~L~i~~~-~~~-------~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~ 139 (311)
.-. ..-+.|.||.+....+ +.. -.+...|.|+.+.+..+.... .....
T Consensus 132 lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~-------eG~~a 204 (382)
T KOG1909|consen 132 LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRP-------EGVTA 204 (382)
T ss_pred CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccC-------chhHH
Confidence 311 2334567888877764 111 123456788888776654321 01122
Q ss_pred HHHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHH-hcCCCcceEEEEecc
Q 042404 140 FLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLI-TNSPNLKELHISGSS 217 (311)
Q Consensus 140 ~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l-~~~p~L~~L~i~~~~ 217 (311)
...-+..+++|+.|++.-++.+.-.. .........+++|+.|.+.. +.-...+...+..-+ +..|.|+.|.+.++.
T Consensus 205 l~eal~~~~~LevLdl~DNtft~egs-~~LakaL~s~~~L~El~l~d-cll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 205 LAEALEHCPHLEVLDLRDNTFTLEGS-VALAKALSSWPHLRELNLGD-CLLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HHHHHHhCCcceeeecccchhhhHHH-HHHHHHhcccchheeecccc-cccccccHHHHHHHHhccCCCCceeccCcch
Confidence 34446788888888888776542110 00111122477788888833 332323444444443 457888888887664
No 19
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.84 E-value=1e-07 Score=87.48 Aligned_cols=202 Identities=16% Similarity=0.171 Sum_probs=102.3
Q ss_pred ceEEEEEeCCCeeeecCCCcc-cCCCCcEEEccceeeC-CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccc
Q 042404 3 IRELVLELGEGEWFRVPSCLF-NCRKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSL 80 (311)
Q Consensus 3 v~~L~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l 80 (311)
.-.|.|....+ -.+|.+++ +.+.|-.|+|++|++. .|+-...+.+|++|.|+++.+..-.+.+ +-+..+|+.|++
T Consensus 128 ~iVLNLS~N~I--etIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLhm 204 (1255)
T KOG0444|consen 128 SIVLNLSYNNI--ETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLHM 204 (1255)
T ss_pred cEEEEcccCcc--ccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc-Cccchhhhhhhc
Confidence 33445444443 46777765 5788888899988885 5566777888888888888665443433 223444555555
Q ss_pred ccccc-ee---EEE-eCCCceEEEeece-eeee--eecCCCCcceeEEEEEEccccch------hhcc-----cccchHH
Q 042404 81 SYFDS-LD---LNI-CAPELKYLYLEGE-FKDI--HLESTPLLVSMSIAMYMTDDIAE------HFEQ-----SSSCNFL 141 (311)
Q Consensus 81 ~~c~~-~~---~~i-~~~~L~~L~i~~~-~~~~--~i~~~p~L~~l~l~~~~~~~~~~------~~~~-----~~~~~~~ 141 (311)
++-.- .. -.+ +..+|+.+.++.+ .+.+ .+...++|+++.++++...+... +.+. ..-..+.
T Consensus 205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP 284 (1255)
T KOG0444|consen 205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLP 284 (1255)
T ss_pred ccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccch
Confidence 54210 00 111 1124555555443 1211 23356666666666554332210 0000 0001223
Q ss_pred HHhcCCCcceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEecc
Q 042404 142 KILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSS 217 (311)
Q Consensus 142 ~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~ 217 (311)
.-+..+++|+.|....+.+.+ ...|++++ ++.+|+.+... .+ .++.++.-+..|+.|++|.+..+.
T Consensus 285 ~avcKL~kL~kLy~n~NkL~F---eGiPSGIG-KL~~Levf~aa---nN---~LElVPEglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 285 DAVCKLTKLTKLYANNNKLTF---EGIPSGIG-KLIQLEVFHAA---NN---KLELVPEGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred HHHhhhHHHHHHHhccCcccc---cCCccchh-hhhhhHHHHhh---cc---ccccCchhhhhhHHHHHhcccccc
Confidence 444566777777776665443 22344333 34444433331 11 123455566667777777666443
No 20
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=3.6e-06 Score=70.88 Aligned_cols=186 Identities=18% Similarity=0.156 Sum_probs=106.8
Q ss_pred CceEEEEEeCCC-eeeecCCCcccCCCCcEEEccceeeCCC-CCC-CCCCcccEEEeeeeeeChHHHHHHHhcCcccccc
Q 042404 2 DIRELVLELGEG-EWFRVPSCLFNCRKLTRLELFRCEFDPP-LTF-TGFPCLRSLNLHQVLVAPEAIESLISSCPLLESL 78 (311)
Q Consensus 2 ~v~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~l~~~-~~~-~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 78 (311)
+|+++||..... +|..+-+-+-.++.|+.|+|+.|.+..+ ... ....+|++|.|.+..+.+......+...|.+++|
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 567777765542 4444444444677888888888877532 222 2456888888888888887788888888888888
Q ss_pred ccccccceeEEEeCCCceEEEeec-eeeeeeecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEee
Q 042404 79 SLSYFDSLDLNICAPELKYLYLEG-EFKDIHLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYI 157 (311)
Q Consensus 79 ~l~~c~~~~~~i~~~~L~~L~i~~-~~~~~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~ 157 (311)
+++.+ ++|-+.+.. |...+ .|.+..+....|....+ .+.-++-...|++..+-++.
T Consensus 152 HmS~N----------~~rq~n~Dd~c~e~~----s~~v~tlh~~~c~~~~w---------~~~~~l~r~Fpnv~sv~v~e 208 (418)
T KOG2982|consen 152 HMSDN----------SLRQLNLDDNCIEDW----STEVLTLHQLPCLEQLW---------LNKNKLSRIFPNVNSVFVCE 208 (418)
T ss_pred hhccc----------hhhhhcccccccccc----chhhhhhhcCCcHHHHH---------HHHHhHHhhcccchheeeec
Confidence 88864 344444333 11111 11222222222211100 01123334568888888888
Q ss_pred eEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccC
Q 042404 158 YFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSN 218 (311)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~ 218 (311)
+.++......- ...||.+.-|.+...+..+ |.+ ..-|..+|.|..|.+.-++.
T Consensus 209 ~PlK~~s~ek~----se~~p~~~~LnL~~~~ids---was-vD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 209 GPLKTESSEKG----SEPFPSLSCLNLGANNIDS---WAS-VDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred Ccccchhhccc----CCCCCcchhhhhccccccc---HHH-HHHHcCCchhheeeccCCcc
Confidence 87775443211 1235555556663322333 323 35578899999999886543
No 21
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.80 E-value=2.8e-06 Score=74.53 Aligned_cols=263 Identities=18% Similarity=0.201 Sum_probs=153.8
Q ss_pred ceEEEEEeCCC-eeeecCCCcccCCCCcEEEccceee-CCC---CCCCCCCcccEEEeeeee-eChHHHHHHHhcCcccc
Q 042404 3 IRELVLELGEG-EWFRVPSCLFNCRKLTRLELFRCEF-DPP---LTFTGFPCLRSLNLHQVL-VAPEAIESLISSCPLLE 76 (311)
Q Consensus 3 v~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~l-~~~---~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le 76 (311)
+|+|.++.++. +.-.+=....+|++++.|.+.+|.. ++- +....++.|+.|.|..|. +++..+..+-.+||+|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 56677766542 1122333445799999999999873 321 113468999999999965 78888888888999999
Q ss_pred cccccccccee------EEEeCCCceEEEeeceeee----e-ee-cCCCCcceeEEEEEEccc-cc--------h--hh-
Q 042404 77 SLSLSYFDSLD------LNICAPELKYLYLEGEFKD----I-HL-ESTPLLVSMSIAMYMTDD-IA--------E--HF- 132 (311)
Q Consensus 77 ~L~l~~c~~~~------~~i~~~~L~~L~i~~~~~~----~-~i-~~~p~L~~l~l~~~~~~~-~~--------~--~~- 132 (311)
+|.++.|.... +.-....++.+...||... + .+ ..++.+.++++..+.... .+ . .+
T Consensus 220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l 299 (483)
T KOG4341|consen 220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVL 299 (483)
T ss_pred HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhh
Confidence 99999997543 2223334666655565321 1 11 144555555543332110 00 0 00
Q ss_pred c-----ccccchHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCC
Q 042404 133 E-----QSSSCNFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPN 207 (311)
Q Consensus 133 ~-----~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~ 207 (311)
. +..+..++.+..+.++|+.|.+....- +.... -..+....+.|+.|.+....... + ..+..+-.+||.
T Consensus 300 ~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~--fsd~~-ft~l~rn~~~Le~l~~e~~~~~~--d-~tL~sls~~C~~ 373 (483)
T KOG4341|consen 300 CYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ--FSDRG-FTMLGRNCPHLERLDLEECGLIT--D-GTLASLSRNCPR 373 (483)
T ss_pred cccCCCCCchHHHHHHhcCCCceEEEeccccch--hhhhh-hhhhhcCChhhhhhcccccceeh--h-hhHhhhccCCch
Confidence 0 123345677777889999998876531 11100 01234457778888884432222 1 147778889999
Q ss_pred cceEEEEeccCCcccccCCCchhhcccccCcccccceeEEEEEeecCCcchHHHHHHHHccCcccceEEEEecc
Q 042404 208 LKELHISGSSNTLAAIEAPDLDFWEKECHADCSFKQLKLVKMTDISGVPHEMELIKFLLSNSPVLEIMSITPCT 281 (311)
Q Consensus 208 L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~v~i~~~~g~~~~~~l~~~ll~~a~~Le~l~i~~~~ 281 (311)
|++|.++.+..-.. ......+ ...|.+.+|..+++.+.... -+-+-..+.+++.||++.+...-
T Consensus 374 lr~lslshce~itD----~gi~~l~---~~~c~~~~l~~lEL~n~p~i---~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 374 LRVLSLSHCELITD----EGIRHLS---SSSCSLEGLEVLELDNCPLI---TDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hccCChhhhhhhhh----hhhhhhh---hccccccccceeeecCCCCc---hHHHHHHHhhCcccceeeeechh
Confidence 99999985533211 0011111 13356777777777654433 23333445788899998877653
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.74 E-value=4e-07 Score=86.93 Aligned_cols=168 Identities=18% Similarity=0.139 Sum_probs=85.3
Q ss_pred CCCcEEEccceeeC-CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccccee---EEEeCCCceEEEee
Q 042404 26 RKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLD---LNICAPELKYLYLE 101 (311)
Q Consensus 26 ~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~---~~i~~~~L~~L~i~ 101 (311)
.+|++++++++.+. .|.....+++|+.+...++.+. .+..-+....+|+.|.+..|+.-. ....-.+|++|.+.
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~--~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV--ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHH--hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeeh
Confidence 46777777776654 3444556777777777766552 233334445556666665554211 11112244455444
Q ss_pred ce----eeeeee-------------------------cCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceE
Q 042404 102 GE----FKDIHL-------------------------ESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEK 152 (311)
Q Consensus 102 ~~----~~~~~i-------------------------~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~ 152 (311)
.. +..-.+ ...+.|..+++.++... ...+..+.+..+|+.
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt-----------d~c~p~l~~~~hLKV 387 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT-----------DSCFPVLVNFKHLKV 387 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc-----------ccchhhhccccceee
Confidence 42 100000 01222222222222221 244677788888888
Q ss_pred EEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEecc
Q 042404 153 LVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSS 217 (311)
Q Consensus 153 L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~ 217 (311)
|.|.++.+.. .|.....++..|++|.+.+ + .+..++.-+-+|+.|++|..+.+.
T Consensus 388 LhLsyNrL~~-----fpas~~~kle~LeeL~LSG---N---kL~~Lp~tva~~~~L~tL~ahsN~ 441 (1081)
T KOG0618|consen 388 LHLSYNRLNS-----FPASKLRKLEELEELNLSG---N---KLTTLPDTVANLGRLHTLRAHSNQ 441 (1081)
T ss_pred eeeccccccc-----CCHHHHhchHHhHHHhccc---c---hhhhhhHHHHhhhhhHHHhhcCCc
Confidence 8888886653 3332233566666666622 2 233555556666666666665543
No 23
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.74 E-value=7.6e-06 Score=53.21 Aligned_cols=35 Identities=34% Similarity=0.562 Sum_probs=17.1
Q ss_pred cCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeee
Q 042404 24 NCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQV 58 (311)
Q Consensus 24 ~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~ 58 (311)
.+++|++|++++|.+. .+..+.++++|+.|+++++
T Consensus 23 ~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 23 NLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3455555555555443 2233445555555555444
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.70 E-value=6.1e-05 Score=73.29 Aligned_cols=103 Identities=17% Similarity=0.148 Sum_probs=56.9
Q ss_pred eeecCCCcccCCCCcEEEccceeeC-CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeEEEe-C
Q 042404 15 WFRVPSCLFNCRKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDLNIC-A 92 (311)
Q Consensus 15 ~~~lp~~~~~~~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~i~-~ 92 (311)
...+|..+. ++|+.|+|++|.+. .|..+ +++|++|+++++.+.. ++.-+ .+.|+.|.+++|....+... .
T Consensus 190 LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l--~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L~Ls~N~L~~LP~~l~ 261 (754)
T PRK15370 190 LTTIPACIP--EQITTLILDNNELKSLPENL--QGNIKTLYANSNQLTS--IPATL--PDTIQEMELSINRITELPERLP 261 (754)
T ss_pred cCcCCcccc--cCCcEEEecCCCCCcCChhh--ccCCCEEECCCCcccc--CChhh--hccccEEECcCCccCcCChhHh
Confidence 346676553 47888888888775 33322 4578888888876653 22211 24677777777653321100 1
Q ss_pred CCceEEEeece-eeeeeecCCCCcceeEEEEEEc
Q 042404 93 PELKYLYLEGE-FKDIHLESTPLLVSMSIAMYMT 125 (311)
Q Consensus 93 ~~L~~L~i~~~-~~~~~i~~~p~L~~l~l~~~~~ 125 (311)
.+|+.|.++++ ...+.-.-.++|+.++++.+..
T Consensus 262 s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~L 295 (754)
T PRK15370 262 SALQSLDLFHNKISCLPENLPEELRYLSVYDNSI 295 (754)
T ss_pred CCCCEEECcCCccCccccccCCCCcEEECCCCcc
Confidence 35777777654 2222111224667776665543
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.65 E-value=2.5e-05 Score=75.97 Aligned_cols=62 Identities=10% Similarity=0.077 Sum_probs=34.7
Q ss_pred CcceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccCC
Q 042404 148 PHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSNT 219 (311)
Q Consensus 148 ~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~~ 219 (311)
++|+.|++.++.+.. .|..+ ..+|+.|.+....+.... ..++.++..+|.+..|.+..++..
T Consensus 367 ~~L~~LdLs~N~Lt~-----LP~~l---~~sL~~LdLs~N~L~~LP--~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 367 PTITTLDVSRNALTN-----LPENL---PAALQIMQASRNNLVRLP--ESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCcCEEECCCCcCCC-----CCHhH---HHHHHHHhhccCCcccCc--hhHHHHhhcCCCccEEEeeCCCcc
Confidence 456777776664432 22111 235666666332222111 156777778899999998877653
No 26
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.60 E-value=2.2e-06 Score=66.50 Aligned_cols=69 Identities=26% Similarity=0.366 Sum_probs=54.2
Q ss_pred eeeecCCCcccCCCCcEEEccceeeC-CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccc
Q 042404 14 EWFRVPSCLFNCRKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFD 84 (311)
Q Consensus 14 ~~~~lp~~~~~~~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~ 84 (311)
....+|+.+....+|++|++.++.+. .|..++++|.|+.|++.-+++.. +++=+.++|.||.|++.+..
T Consensus 44 Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~--lprgfgs~p~levldltynn 113 (264)
T KOG0617|consen 44 KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNI--LPRGFGSFPALEVLDLTYNN 113 (264)
T ss_pred ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhc--CccccCCCchhhhhhccccc
Confidence 34678999999999999999999886 57778889999999888665422 33336688999999998865
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.58 E-value=2.1e-05 Score=68.82 Aligned_cols=56 Identities=27% Similarity=0.399 Sum_probs=41.6
Q ss_pred EEEEEeCCCeeeecCCCcc-cCCCCcEEEccceeeC--CCCCCCCCCcccEEEeee-eeeCh
Q 042404 5 ELVLELGEGEWFRVPSCLF-NCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQ-VLVAP 62 (311)
Q Consensus 5 ~L~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~-~~~~~ 62 (311)
+++|+-.++ ..+|...| ..++||+|+|+.|.+. .|.+|.++++|.+|.+.+ +.|++
T Consensus 71 eirLdqN~I--~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 71 EIRLDQNQI--SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred EEEeccCCc--ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 344444433 56776655 5899999999999876 577788999999999988 66653
No 28
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.55 E-value=3e-05 Score=74.71 Aligned_cols=199 Identities=24% Similarity=0.312 Sum_probs=131.5
Q ss_pred CcccEEEeeeeeeChHHHHHHHhcCcccccccccccccee-----E-EE-------------eCCCceEEEeece--ee-
Q 042404 48 PCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLD-----L-NI-------------CAPELKYLYLEGE--FK- 105 (311)
Q Consensus 48 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~-----~-~i-------------~~~~L~~L~i~~~--~~- 105 (311)
-++++.++.++......+.. +. +..|++|.|..+...+ . .+ +-.+|++|+++|. +.
T Consensus 60 f~ltki~l~~~~~~~~~~~~-l~-~~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~ 137 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQHQTLEM-LR-KQDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSN 137 (699)
T ss_pred heeEEeeccceecchhHHHH-Hh-hccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhc
Confidence 35677777777666665553 33 3339999998775433 0 11 1247999999984 21
Q ss_pred ee--eec-CCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCccccccceE
Q 042404 106 DI--HLE-STPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVI 182 (311)
Q Consensus 106 ~~--~i~-~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L 182 (311)
.+ .++ .+|+|+++.+.+..... .++..+..++|+|..|++++..++.++ ++ ..++||+.|
T Consensus 138 ~W~~kig~~LPsL~sL~i~~~~~~~----------~dF~~lc~sFpNL~sLDIS~TnI~nl~------GI-S~LknLq~L 200 (699)
T KOG3665|consen 138 GWPKKIGTMLPSLRSLVISGRQFDN----------DDFSQLCASFPNLRSLDISGTNISNLS------GI-SRLKNLQVL 200 (699)
T ss_pred cHHHHHhhhCcccceEEecCceecc----------hhHHHHhhccCccceeecCCCCccCcH------HH-hccccHHHH
Confidence 22 122 79999999998765432 246778899999999999988766431 23 368899999
Q ss_pred EEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccCCcccccCCCchhhcccccCcccccceeEEEEEeecCCcchHHHH
Q 042404 183 ELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSNTLAAIEAPDLDFWEKECHADCSFKQLKLVKMTDISGVPHEMELI 262 (311)
Q Consensus 183 ~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~v~i~~~~g~~~~~~l~ 262 (311)
.+..+.+.+..+ +.. |-+..+|+.|+|+........ .....|.+.. -.+++|+.+ +..|..-..+++
T Consensus 201 ~mrnLe~e~~~~---l~~-LF~L~~L~vLDIS~~~~~~~~--~ii~qYlec~----~~LpeLrfL---DcSgTdi~~~~l 267 (699)
T KOG3665|consen 201 SMRNLEFESYQD---LID-LFNLKKLRVLDISRDKNNDDT--KIIEQYLECG----MVLPELRFL---DCSGTDINEEIL 267 (699)
T ss_pred hccCCCCCchhh---HHH-HhcccCCCeeeccccccccch--HHHHHHHHhc----ccCccccEE---ecCCcchhHHHH
Confidence 997766666433 323 335889999999977654331 1122333221 135555555 455888888999
Q ss_pred HHHHccCcccceEEEE
Q 042404 263 KFLLSNSPVLEIMSIT 278 (311)
Q Consensus 263 ~~ll~~a~~Le~l~i~ 278 (311)
+.+++..+.|+.+.+.
T Consensus 268 e~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 268 EELLNSHPNLQQIAAL 283 (699)
T ss_pred HHHHHhCccHhhhhhh
Confidence 9999999999988854
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.47 E-value=1.1e-05 Score=64.14 Aligned_cols=78 Identities=24% Similarity=0.288 Sum_probs=20.3
Q ss_pred cccCCCCcEEEccceeeCCCCCCC-CCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeE----EEeCCCce
Q 042404 22 LFNCRKLTRLELFRCEFDPPLTFT-GFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDL----NICAPELK 96 (311)
Q Consensus 22 ~~~~~~L~~L~L~~~~l~~~~~~~-~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~----~i~~~~L~ 96 (311)
+-++..++.|+|.++.++....++ .+.+|+.|+|++|.+.. ++. +..++.|++|.++++.-..+ .-..|+|+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~--l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK--LEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred cccccccccccccccccccccchhhhhcCCCEEECCCCCCcc--ccC-ccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 456678999999999988655565 58899999999998765 221 44688899998887653221 11235555
Q ss_pred EEEeec
Q 042404 97 YLYLEG 102 (311)
Q Consensus 97 ~L~i~~ 102 (311)
.|.+.+
T Consensus 92 ~L~L~~ 97 (175)
T PF14580_consen 92 ELYLSN 97 (175)
T ss_dssp EEE-TT
T ss_pred EEECcC
Confidence 555554
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.45 E-value=0.00015 Score=62.60 Aligned_cols=97 Identities=18% Similarity=0.225 Sum_probs=44.4
Q ss_pred ccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccCCcccccCCCchhhcccccCcccccceeEEEEEeec-C
Q 042404 176 YNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSNTLAAIEAPDLDFWEKECHADCSFKQLKLVKMTDIS-G 254 (311)
Q Consensus 176 f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~v~i~~~~-g 254 (311)
.+.|+.+.+.. +.....++..+..-+..||+|+.|++..+..... ....... .-+..++|+++.+.... -
T Consensus 184 ~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~DNtft~e-----gs~~Lak---aL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 184 HPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE-----GSVALAK---ALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred ccccceEEEec-ccccCchhHHHHHHHHhCCcceeeecccchhhhH-----HHHHHHH---Hhcccchheeecccccccc
Confidence 34555555522 2112234445555566666666666665543321 0000000 11223455555544332 2
Q ss_pred CcchHHHHHHHHccCcccceEEEEecc
Q 042404 255 VPHEMELIKFLLSNSPVLEIMSITPCT 281 (311)
Q Consensus 255 ~~~~~~l~~~ll~~a~~Le~l~i~~~~ 281 (311)
+..-..+++.+-+.+|.|+.+.+-+++
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcch
Confidence 233455666666666666666555443
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.44 E-value=0.00037 Score=67.90 Aligned_cols=100 Identities=20% Similarity=0.200 Sum_probs=57.1
Q ss_pred eeecCCCcccCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeEEEeCCC
Q 042404 15 WFRVPSCLFNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDLNICAPE 94 (311)
Q Consensus 15 ~~~lp~~~~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~i~~~~ 94 (311)
...+|.++.. +|+.|.+..|.++..+. ..++|++|+|++|.++. ++. ..++|++|++..+....+....++
T Consensus 213 LtsLP~~l~~--~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~L~Ls~N~L~~Lp~lp~~ 283 (788)
T PRK15387 213 LTTLPDCLPA--HITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--LPV---LPPGLLELSIFSNPLTHLPALPSG 283 (788)
T ss_pred CCcCCcchhc--CCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCc--ccC---cccccceeeccCCchhhhhhchhh
Confidence 3467877653 78888888887763222 35788888888887653 222 246777777776643222111235
Q ss_pred ceEEEeece-eeeeeecCCCCcceeEEEEEE
Q 042404 95 LKYLYLEGE-FKDIHLESTPLLVSMSIAMYM 124 (311)
Q Consensus 95 L~~L~i~~~-~~~~~i~~~p~L~~l~l~~~~ 124 (311)
|+.|.+.++ ...+.. ..|+|+.++++.+.
T Consensus 284 L~~L~Ls~N~Lt~LP~-~p~~L~~LdLS~N~ 313 (788)
T PRK15387 284 LCKLWIFGNQLTSLPV-LPPGLQELSVSDNQ 313 (788)
T ss_pred cCEEECcCCccccccc-cccccceeECCCCc
Confidence 666666554 122211 34556666665544
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.42 E-value=0.00012 Score=47.44 Aligned_cols=58 Identities=28% Similarity=0.394 Sum_probs=47.4
Q ss_pred CCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccc
Q 042404 26 RKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFD 84 (311)
Q Consensus 26 ~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~ 84 (311)
++|++|++++|.+. ++..+.++++|++|+++++.+..- -+..+.++|+|++|.+.+|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence 47899999999886 345688999999999999988642 22347899999999999874
No 33
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.35 E-value=4e-05 Score=73.70 Aligned_cols=123 Identities=20% Similarity=0.210 Sum_probs=66.0
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeC------------------------CCCCCCCCCcccEEEeee
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFD------------------------PPLTFTGFPCLRSLNLHQ 57 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~------------------------~~~~~~~l~~L~~L~L~~ 57 (311)
+++.+++.... ...+|.++..|.+|+.|+...+++. .|+....+.+|++|+|+.
T Consensus 242 nl~~~dis~n~--l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 242 NLQYLDISHNN--LSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred cceeeecchhh--hhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence 34455544432 3466777777777777766665432 244455688999999999
Q ss_pred eeeChH---H-------HHHHHhcCccccc--------------ccccccccee----EEEeCCCceEEEeece----ee
Q 042404 58 VLVAPE---A-------IESLISSCPLLES--------------LSLSYFDSLD----LNICAPELKYLYLEGE----FK 105 (311)
Q Consensus 58 ~~~~~~---~-------l~~ll~~cp~Le~--------------L~l~~c~~~~----~~i~~~~L~~L~i~~~----~~ 105 (311)
+.+..- . +..+=..|-.|+. |.+.++..-+ +-..+++||.|++..+ |+
T Consensus 320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp 399 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP 399 (1081)
T ss_pred ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCC
Confidence 886531 0 1111111222222 2222221111 3345567777777664 33
Q ss_pred eeeecCCCCcceeEEEEEEcc
Q 042404 106 DIHLESTPLLVSMSIAMYMTD 126 (311)
Q Consensus 106 ~~~i~~~p~L~~l~l~~~~~~ 126 (311)
...+...+.|++++++++...
T Consensus 400 as~~~kle~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 400 ASKLRKLEELEELNLSGNKLT 420 (1081)
T ss_pred HHHHhchHHhHHHhcccchhh
Confidence 333446677777777776644
No 34
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.23 E-value=6e-05 Score=72.65 Aligned_cols=60 Identities=28% Similarity=0.316 Sum_probs=47.6
Q ss_pred CCCcEEEccceee-C--CCCC-CCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccc
Q 042404 26 RKLTRLELFRCEF-D--PPLT-FTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDS 85 (311)
Q Consensus 26 ~~L~~L~L~~~~l-~--~~~~-~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 85 (311)
.+|++|+++|... . .|.. ...||+|++|.+.+..+..+++.++..++|+|..|+|+++.-
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI 185 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI 185 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc
Confidence 5899999988543 1 2222 236999999999999988888999999999999999998763
No 35
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.09 E-value=0.00045 Score=67.33 Aligned_cols=70 Identities=17% Similarity=0.089 Sum_probs=35.2
Q ss_pred CCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeEEEeCCCceEEEeec
Q 042404 26 RKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDLNICAPELKYLYLEG 102 (311)
Q Consensus 26 ~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~i~~~~L~~L~i~~ 102 (311)
.+|+.|+|++|.+...+. ..++|+.|+|++|.+.. ++. .-+.|+.|.+.+|....+..-.++|+.|.+++
T Consensus 282 ~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~--Lp~---lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~ 351 (788)
T PRK15387 282 SGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLAS--LPA---LPSELCKLWAYNNQLTSLPTLPSGLQELSVSD 351 (788)
T ss_pred hhcCEEECcCCccccccc--cccccceeECCCCcccc--CCC---CcccccccccccCccccccccccccceEecCC
Confidence 356667777766652221 24678888888776653 111 12345555555543221111112455555555
No 36
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=97.00 E-value=0.00097 Score=34.91 Aligned_cols=25 Identities=40% Similarity=0.842 Sum_probs=22.4
Q ss_pred cccEEEeeeeeeChH-HHHHHHhcCc
Q 042404 49 CLRSLNLHQVLVAPE-AIESLISSCP 73 (311)
Q Consensus 49 ~L~~L~L~~~~~~~~-~l~~ll~~cp 73 (311)
+||+|+|..+.+.++ .++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999998765 7999999998
No 37
>PLN03150 hypothetical protein; Provisional
Probab=96.98 E-value=0.00043 Score=66.59 Aligned_cols=56 Identities=27% Similarity=0.285 Sum_probs=32.4
Q ss_pred CcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccc
Q 042404 28 LTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFD 84 (311)
Q Consensus 28 L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~ 84 (311)
++.|+|+++.+. .|..+..+++|+.|+|+++.+.+. ++..+..+++|+.|+|.++.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~ 477 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNS 477 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCC
Confidence 556666665553 344455666666666666655443 33345566666666666654
No 38
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.98 E-value=1.3e-05 Score=70.47 Aligned_cols=99 Identities=22% Similarity=0.215 Sum_probs=73.4
Q ss_pred CCCcEEEccceeeCCCC----CCCCCCcccEEEeeeee-eChHHHHHHHhcCcccccccccccccee------EEEeCCC
Q 042404 26 RKLTRLELFRCEFDPPL----TFTGFPCLRSLNLHQVL-VAPEAIESLISSCPLLESLSLSYFDSLD------LNICAPE 94 (311)
Q Consensus 26 ~~L~~L~L~~~~l~~~~----~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~------~~i~~~~ 94 (311)
..|+.|.|.+++-.... ...++|+++.|.+.+|. +++..+..+-..|+.|++|.+..|..++ +.-.+|+
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 48999999998743211 24579999999999987 7888888888889999999999998665 3345789
Q ss_pred ceEEEeeceee----ee--eecCCCCcceeEEEEEE
Q 042404 95 LKYLYLEGEFK----DI--HLESTPLLVSMSIAMYM 124 (311)
Q Consensus 95 L~~L~i~~~~~----~~--~i~~~p~L~~l~l~~~~ 124 (311)
|+++++++|.. .+ ...++.+++.+...++.
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~ 253 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL 253 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccc
Confidence 99999998731 12 12356666666655543
No 39
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.97 E-value=4.6e-06 Score=72.96 Aligned_cols=178 Identities=17% Similarity=0.095 Sum_probs=95.5
Q ss_pred eeecCCCcccCCCCcEEEccceeeC-CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeEEEe--
Q 042404 15 WFRVPSCLFNCRKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDLNIC-- 91 (311)
Q Consensus 15 ~~~lp~~~~~~~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~i~-- 91 (311)
...+|.+++.|..|..|+.+++.+. .|++++++.+|..|.+.++.+..- .+..+. ...|++|+.....--.+.-+
T Consensus 126 ~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l-~~~~i~-m~~L~~ld~~~N~L~tlP~~lg 203 (565)
T KOG0472|consen 126 LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKAL-PENHIA-MKRLKHLDCNSNLLETLPPELG 203 (565)
T ss_pred eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhC-CHHHHH-HHHHHhcccchhhhhcCChhhc
Confidence 4567777777777777777766653 566666777777777777765432 122222 55666665543321111111
Q ss_pred -CCCceEEEeecee-ee-eeecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEEeecCCC
Q 042404 92 -APELKYLYLEGEF-KD-IHLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYLSIGDD 168 (311)
Q Consensus 92 -~~~L~~L~i~~~~-~~-~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~ 168 (311)
..+|..|.+..+- .. -.++++..|++++++.+...- --.+.+..++++..|+++.+.++. +
T Consensus 204 ~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~-----------lpae~~~~L~~l~vLDLRdNklke-----~ 267 (565)
T KOG0472|consen 204 GLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEM-----------LPAEHLKHLNSLLVLDLRDNKLKE-----V 267 (565)
T ss_pred chhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHh-----------hHHHHhcccccceeeecccccccc-----C
Confidence 1233334333321 00 145566667777665544321 113455678888888888777664 3
Q ss_pred CCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccC
Q 042404 169 PGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSN 218 (311)
Q Consensus 169 ~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~ 218 (311)
|..+. .+.+|..|++.. + ++.+++.-+++. +|+.|.+++++.
T Consensus 268 Pde~c-lLrsL~rLDlSN---N---~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 268 PDEIC-LLRSLERLDLSN---N---DISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred chHHH-HhhhhhhhcccC---C---ccccCCcccccc-eeeehhhcCCch
Confidence 33222 455566666521 1 223555556666 666666666554
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.77 E-value=0.00059 Score=40.90 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=20.6
Q ss_pred CCcEEEccceeeCCCCC-CCCCCcccEEEeeeeeeC
Q 042404 27 KLTRLELFRCEFDPPLT-FTGFPCLRSLNLHQVLVA 61 (311)
Q Consensus 27 ~L~~L~L~~~~l~~~~~-~~~l~~L~~L~L~~~~~~ 61 (311)
+|++|+|+++.+...+. +.++++|+.|+++++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 56677777666653223 666777777777666554
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.63 E-value=0.00019 Score=60.83 Aligned_cols=180 Identities=19% Similarity=0.192 Sum_probs=93.2
Q ss_pred eecCCCcccCCCCcEEEccceeeCCCCCC-CCCCcccEEEeeeeeeChHH-H---------------------HHHHhcC
Q 042404 16 FRVPSCLFNCRKLTRLELFRCEFDPPLTF-TGFPCLRSLNLHQVLVAPEA-I---------------------ESLISSC 72 (311)
Q Consensus 16 ~~lp~~~~~~~~L~~L~L~~~~l~~~~~~-~~l~~L~~L~L~~~~~~~~~-l---------------------~~ll~~c 72 (311)
-.+|..+...++|..++++.|.-....++ ..=|.|.+++.++..+++.. + -..+.-.
T Consensus 204 ~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTW 283 (490)
T KOG1259|consen 204 NRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTW 283 (490)
T ss_pred cccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchH
Confidence 35777777889999999998864322222 24478899998887654310 0 0001123
Q ss_pred ccccccccccccc--ee-EEEeCCCceEEEeece-eeee-eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCC
Q 042404 73 PLLESLSLSYFDS--LD-LNICAPELKYLYLEGE-FKDI-HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGV 147 (311)
Q Consensus 73 p~Le~L~l~~c~~--~~-~~i~~~~L~~L~i~~~-~~~~-~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 147 (311)
..|++|+++++.. ++ -.--.|.++.|.++.+ ...+ .+..+++|+.++++++.... +..+-..+
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~------------~~Gwh~KL 351 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAE------------CVGWHLKL 351 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHh------------hhhhHhhh
Confidence 3455555554321 11 0001255555555543 1111 23355666666665544321 12222355
Q ss_pred CcceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccC
Q 042404 148 PHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSN 218 (311)
Q Consensus 148 ~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~ 218 (311)
-++++|.+..+.++.++ ++. ++.+|..|.+.+ +...+++. ..-+++.|+||.+.+..++.
T Consensus 352 GNIKtL~La~N~iE~LS------GL~-KLYSLvnLDl~~---N~Ie~lde-V~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 352 GNIKTLKLAQNKIETLS------GLR-KLYSLVNLDLSS---NQIEELDE-VNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred cCEeeeehhhhhHhhhh------hhH-hhhhheeccccc---cchhhHHH-hcccccccHHHHHhhcCCCc
Confidence 56666666655544321 222 466677777632 22222222 24467788888888876654
No 42
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.39 E-value=0.00062 Score=59.83 Aligned_cols=66 Identities=24% Similarity=0.201 Sum_probs=45.0
Q ss_pred eeeecCCCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccc
Q 042404 14 EWFRVPSCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSY 82 (311)
Q Consensus 14 ~~~~lp~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~ 82 (311)
....+|..+..-+ +.++|..|.+. ++.+|..+++||.|+|+++.|+.-+- +.+.+.+.|-+|.+.+
T Consensus 57 GL~eVP~~LP~~t--veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p-~AF~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 57 GLTEVPANLPPET--VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAP-DAFKGLASLLSLVLYG 124 (498)
T ss_pred CcccCcccCCCcc--eEEEeccCCcccCChhhccchhhhceecccccchhhcCh-HhhhhhHhhhHHHhhc
Confidence 3455666554444 44566666654 55678999999999999998876422 2356777777777766
No 43
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.23 E-value=0.00089 Score=59.07 Aligned_cols=246 Identities=17% Similarity=0.143 Sum_probs=125.0
Q ss_pred ceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeC-CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcc---cccc
Q 042404 3 IRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPL---LESL 78 (311)
Q Consensus 3 v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~---Le~L 78 (311)
+..|||+-. ....+|..+.-.++|.+|+++++.+. .|..++++ +|+.|.+.++.+.. +..-+-+|+. |++|
T Consensus 254 l~vLDLRdN--klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrT--iRr~ii~~gT~~vLKyL 328 (565)
T KOG0472|consen 254 LLVLDLRDN--KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRT--IRREIISKGTQEVLKYL 328 (565)
T ss_pred ceeeecccc--ccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHH--HHHHHHcccHHHHHHHH
Confidence 334444433 44688998888999999999999886 57778888 89999998886532 3333334443 3333
Q ss_pred cc-cccccee---------------EEEe---CCCceEEEeece-eeee-----eecCCCCcceeEEEEEEccccchhhc
Q 042404 79 SL-SYFDSLD---------------LNIC---APELKYLYLEGE-FKDI-----HLESTPLLVSMSIAMYMTDDIAEHFE 133 (311)
Q Consensus 79 ~l-~~c~~~~---------------~~i~---~~~L~~L~i~~~-~~~~-----~i~~~p~L~~l~l~~~~~~~~~~~~~ 133 (311)
.= ..|+++. ...+ .-+.|.|.+.+. ...+ ....-.-+..+.++.+...+.+....
T Consensus 329 rs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~ 408 (565)
T KOG0472|consen 329 RSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLV 408 (565)
T ss_pred HHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhH
Confidence 21 1122210 1111 124566666662 1111 11111125555666555444332110
Q ss_pred ------------ccccchHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHH
Q 042404 134 ------------QSSSCNFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRL 201 (311)
Q Consensus 134 ------------~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~ 201 (311)
...-.-+...+..+++++.|+++.+.+.. .|..+.. ...|+.|.+ .++.. ..++.+
T Consensus 409 ~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~-----LP~e~~~-lv~Lq~Lnl---S~NrF---r~lP~~ 476 (565)
T KOG0472|consen 409 ELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND-----LPEEMGS-LVRLQTLNL---SFNRF---RMLPEC 476 (565)
T ss_pred HHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh-----cchhhhh-hhhhheecc---ccccc---ccchHH
Confidence 00001123445677778888877765542 3333332 233555555 23322 244555
Q ss_pred HhcCCCcceEEEEeccCCcccccCCCchhhcccccCcccccceeEEEEEeecCCcchHHHHHHHHccCcccceEEEEecc
Q 042404 202 ITNSPNLKELHISGSSNTLAAIEAPDLDFWEKECHADCSFKQLKLVKMTDISGVPHEMELIKFLLSNSPVLEIMSITPCT 281 (311)
Q Consensus 202 l~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~v~i~~~~g~~~~~~l~~~ll~~a~~Le~l~i~~~~ 281 (311)
+.-...+|.+-.+.++-.. . ++..+.+++.+...+. ..+.++.+-=++.|+++|+.+.+.-.+
T Consensus 477 ~y~lq~lEtllas~nqi~~-----v----------d~~~l~nm~nL~tLDL--~nNdlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 477 LYELQTLETLLASNNQIGS-----V----------DPSGLKNMRNLTTLDL--QNNDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred HhhHHHHHHHHhccccccc-----c----------ChHHhhhhhhcceecc--CCCchhhCChhhccccceeEEEecCCc
Confidence 4444444444443222111 1 1111222333333333 235566777788899999999988765
Q ss_pred c
Q 042404 282 F 282 (311)
Q Consensus 282 ~ 282 (311)
.
T Consensus 540 f 540 (565)
T KOG0472|consen 540 F 540 (565)
T ss_pred c
Confidence 4
No 44
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.97 E-value=0.0093 Score=47.94 Aligned_cols=97 Identities=19% Similarity=0.275 Sum_probs=66.0
Q ss_pred CCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeCh--HHHHHHHhcCcccccccccccccee-----EEEeCCCceEE
Q 042404 26 RKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAP--EAIESLISSCPLLESLSLSYFDSLD-----LNICAPELKYL 98 (311)
Q Consensus 26 ~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~--~~l~~ll~~cp~Le~L~l~~c~~~~-----~~i~~~~L~~L 98 (311)
.....++|+.|.+.....+..+++|.+|.|.++.+.. ..+.. ..|+|..|.+.++..-+ =-..+|+|++|
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~---~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDT---FLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhh---hccccceEEecCcchhhhhhcchhccCCcccee
Confidence 3566778887776655567788888888888887764 22332 46888888888765322 12356788888
Q ss_pred Eeece-------eeeeeecCCCCcceeEEEEEEc
Q 042404 99 YLEGE-------FKDIHLESTPLLVSMSIAMYMT 125 (311)
Q Consensus 99 ~i~~~-------~~~~~i~~~p~L~~l~l~~~~~ 125 (311)
.+-++ +....+...|+|+.+++.....
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 88874 2234566899999998766543
No 45
>PLN03150 hypothetical protein; Provisional
Probab=95.91 E-value=0.0053 Score=59.18 Aligned_cols=81 Identities=19% Similarity=0.120 Sum_probs=64.9
Q ss_pred ceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccc
Q 042404 3 IRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSL 80 (311)
Q Consensus 3 v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l 80 (311)
|+.|+|.-... .-.+|..+..+++|+.|+|++|.+. .|..+..+++|+.|+|+++.+.+. ++..+..+++|+.|+|
T Consensus 420 v~~L~L~~n~L-~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGL-RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCc-cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEEC
Confidence 44555543332 2468889999999999999999884 566788999999999999998765 5566789999999999
Q ss_pred ccccc
Q 042404 81 SYFDS 85 (311)
Q Consensus 81 ~~c~~ 85 (311)
.++..
T Consensus 498 s~N~l 502 (623)
T PLN03150 498 NGNSL 502 (623)
T ss_pred cCCcc
Confidence 98864
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.86 E-value=0.0056 Score=52.12 Aligned_cols=101 Identities=22% Similarity=0.245 Sum_probs=67.5
Q ss_pred cCCCCcEEEccceeeCCCCC---C-CCCCcccEEEeeeeeeC-hHHHHHHHhcCcccccccccccccee----EEEeCCC
Q 042404 24 NCRKLTRLELFRCEFDPPLT---F-TGFPCLRSLNLHQVLVA-PEAIESLISSCPLLESLSLSYFDSLD----LNICAPE 94 (311)
Q Consensus 24 ~~~~L~~L~L~~~~l~~~~~---~-~~l~~L~~L~L~~~~~~-~~~l~~ll~~cp~Le~L~l~~c~~~~----~~i~~~~ 94 (311)
+.+.+..|.|.++.+..... + ...+.++.|+|.++.++ +.++.+++.+.|.|+.|.|+.+.--. +.....+
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n 122 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN 122 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence 33444456666666542211 2 35788999999999986 48899999999999999998765322 2233458
Q ss_pred ceEEEeecee-ee----eeecCCCCcceeEEEEEE
Q 042404 95 LKYLYLEGEF-KD----IHLESTPLLVSMSIAMYM 124 (311)
Q Consensus 95 L~~L~i~~~~-~~----~~i~~~p~L~~l~l~~~~ 124 (311)
|+.+-+.|.. +. -.+...|.++++.++.+.
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 8888888842 11 124477778877776653
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.75 E-value=0.0028 Score=37.93 Aligned_cols=38 Identities=24% Similarity=0.230 Sum_probs=30.3
Q ss_pred CCceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeCC
Q 042404 1 NDIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFDP 40 (311)
Q Consensus 1 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~~ 40 (311)
+++++|++.-... ..+|+.+.++++|+.|++++|.+..
T Consensus 1 ~~L~~L~l~~N~i--~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQI--TDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS---SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCC--cccCchHhCCCCCCEEEecCCCCCC
Confidence 4788999877654 4788889999999999999998764
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.43 E-value=0.00078 Score=63.71 Aligned_cols=99 Identities=22% Similarity=0.182 Sum_probs=53.5
Q ss_pred CcccEEEeeeeeeChHHHHHHHhcCcccccccccccccee---EEEeCCCceEEEeecee-e-eeeecCCCCcceeEEEE
Q 042404 48 PCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLD---LNICAPELKYLYLEGEF-K-DIHLESTPLLVSMSIAM 122 (311)
Q Consensus 48 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~---~~i~~~~L~~L~i~~~~-~-~~~i~~~p~L~~l~l~~ 122 (311)
|.|+.|+|+++.+.+-+ .+..||.|++|+|+++.--. +...+..|..|.+.++. . ...+.++.+|..+++++
T Consensus 187 ~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSY 263 (1096)
T ss_pred HHhhhhccchhhhhhhH---HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhH
Confidence 45666666666554432 25567777777777654321 34444456667666642 1 22345667777777766
Q ss_pred EEccccchhhcccccchHHHHhcCCCcceEEEEeeeE
Q 042404 123 YMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYF 159 (311)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~ 159 (311)
+-..+.. . ...+..+..|+.|+|.++.
T Consensus 264 Nll~~hs---------e-L~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 264 NLLSEHS---------E-LEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhcch---------h-hhHHHHHHHHHHHhhcCCc
Confidence 5544321 1 2233445555555555544
No 49
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.09 E-value=0.0079 Score=54.64 Aligned_cols=101 Identities=25% Similarity=0.274 Sum_probs=65.1
Q ss_pred CcccCCCCcEEEccceeeCC-CCCCCCC-CcccEEEeeeeeeChHHHHHHHhcCcccccccccccccee---EEEeCCCc
Q 042404 21 CLFNCRKLTRLELFRCEFDP-PLTFTGF-PCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLD---LNICAPEL 95 (311)
Q Consensus 21 ~~~~~~~L~~L~L~~~~l~~-~~~~~~l-~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~---~~i~~~~L 95 (311)
.+...+.+..|.+..+.+.. ++....+ ++|+.|++.++.+..- ..-+..+|+|+.|++..+...+ .....+.|
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l--~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L 188 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESL--PSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNL 188 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhcccccccccchhhh--hhhhhccccccccccCCchhhhhhhhhhhhhhh
Confidence 34445678888888887763 3333334 2888888888866542 2235678999999998887655 22266788
Q ss_pred eEEEeece-eeeeeec-CCCC-cceeEEEEE
Q 042404 96 KYLYLEGE-FKDIHLE-STPL-LVSMSIAMY 123 (311)
Q Consensus 96 ~~L~i~~~-~~~~~i~-~~p~-L~~l~l~~~ 123 (311)
+.|.+++. ...+.-. ..++ |+++.+..+
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred hheeccCCccccCchhhhhhhhhhhhhhcCC
Confidence 88888875 3333321 2333 777777665
No 50
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.86 E-value=0.00084 Score=56.45 Aligned_cols=13 Identities=38% Similarity=0.692 Sum_probs=6.8
Q ss_pred HHHhcCCCcceEE
Q 042404 200 RLITNSPNLKELH 212 (311)
Q Consensus 200 ~~l~~~p~L~~L~ 212 (311)
.+|+..|+|++|+
T Consensus 111 ~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 111 KVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHcccchhcc
Confidence 3455555555554
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.85 E-value=0.034 Score=44.81 Aligned_cols=77 Identities=25% Similarity=0.271 Sum_probs=39.3
Q ss_pred CCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeCh-HHHHHHHhcCccccccccccccc-----ee--EEEeCCC
Q 042404 25 CRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAP-EAIESLISSCPLLESLSLSYFDS-----LD--LNICAPE 94 (311)
Q Consensus 25 ~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l~~c~~-----~~--~~i~~~~ 94 (311)
.+.|..|.|++|+++ .|.-...+|+|++|.|.++.+.. +++.. +..||.|+.|++.+... .+ +--.-|+
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~ 141 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPS 141 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCchhcccCceeEEEEecCc
Confidence 455666666666654 22212245666666666665433 33433 44566666666655432 11 2223456
Q ss_pred ceEEEeec
Q 042404 95 LKYLYLEG 102 (311)
Q Consensus 95 L~~L~i~~ 102 (311)
|+.|++.+
T Consensus 142 l~~LDF~k 149 (233)
T KOG1644|consen 142 LRTLDFQK 149 (233)
T ss_pred ceEeehhh
Confidence 66665544
No 52
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.82 E-value=0.0017 Score=55.26 Aligned_cols=53 Identities=28% Similarity=0.294 Sum_probs=23.1
Q ss_pred CCcEEEccceeeCC-CCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccc
Q 042404 27 KLTRLELFRCEFDP-PLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSY 82 (311)
Q Consensus 27 ~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~ 82 (311)
.|+.|+|++|.+.. ..+..-.|.++.|+++++.+.. ++. +...++|.+|++++
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~--v~n-La~L~~L~~LDLS~ 338 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT--VQN-LAELPQLQLLDLSG 338 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccceee--ehh-hhhcccceEeeccc
Confidence 34445555554431 1222234555555555554322 111 33445555555554
No 53
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.43 E-value=0.012 Score=54.60 Aligned_cols=101 Identities=29% Similarity=0.378 Sum_probs=43.5
Q ss_pred CCCCcEEEcccee-eCCC---CCCCCCCcccEEEeeee-e-e--ChHHHHHHHhcCcccccccccccccee------EEE
Q 042404 25 CRKLTRLELFRCE-FDPP---LTFTGFPCLRSLNLHQV-L-V--APEAIESLISSCPLLESLSLSYFDSLD------LNI 90 (311)
Q Consensus 25 ~~~L~~L~L~~~~-l~~~---~~~~~l~~L~~L~L~~~-~-~--~~~~l~~ll~~cp~Le~L~l~~c~~~~------~~i 90 (311)
++.|+.|.+..|. +.+. +....++.|+.|++.++ . . .......+...|++|++|++.+|..+. +.-
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4555555555542 2210 11224555555555541 1 1 111122234455555555555554221 112
Q ss_pred eCCCceEEEeeceee--e--e-e-ecCCCCcceeEEEEEEc
Q 042404 91 CAPELKYLYLEGEFK--D--I-H-LESTPLLVSMSIAMYMT 125 (311)
Q Consensus 91 ~~~~L~~L~i~~~~~--~--~-~-i~~~p~L~~l~l~~~~~ 125 (311)
.+|+|+.|.+.+|.. . + . ...+|+|+++++..+..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 245555555444321 1 1 1 12556666666665443
No 54
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.07 E-value=0.017 Score=53.59 Aligned_cols=102 Identities=29% Similarity=0.418 Sum_probs=70.4
Q ss_pred CCcccCCCCcEEEccce-ee-C-----CCCCCCCCCcccEEEeeeee-eChHHHHHHHhcCcccccccccccccee----
Q 042404 20 SCLFNCRKLTRLELFRC-EF-D-----PPLTFTGFPCLRSLNLHQVL-VAPEAIESLISSCPLLESLSLSYFDSLD---- 87 (311)
Q Consensus 20 ~~~~~~~~L~~L~L~~~-~l-~-----~~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~---- 87 (311)
+....|+.|+.|+++++ .. . .......+++|+.|++.++. +++..+..+...||+|+.|.+..|..+.
T Consensus 208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl 287 (482)
T KOG1947|consen 208 ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGL 287 (482)
T ss_pred HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHH
Confidence 33456889999999873 22 1 11223467889999999888 8888888888889999999988887532
Q ss_pred --EEEeCCCceEEEeeceee-------eeeecCCCCcceeEEEE
Q 042404 88 --LNICAPELKYLYLEGEFK-------DIHLESTPLLVSMSIAM 122 (311)
Q Consensus 88 --~~i~~~~L~~L~i~~~~~-------~~~i~~~p~L~~l~l~~ 122 (311)
+.-.+|+|+.|.+.+|.. .+ ..++|+++.+.+..
T Consensus 288 ~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 288 VSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLS 330 (482)
T ss_pred HHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhh
Confidence 444567899999988632 12 23577777755433
No 55
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=93.84 E-value=0.017 Score=52.46 Aligned_cols=149 Identities=20% Similarity=0.234 Sum_probs=100.1
Q ss_pred eeecCCCcccCC-CCcEEEccceeeCC-CCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeEEE--
Q 042404 15 WFRVPSCLFNCR-KLTRLELFRCEFDP-PLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDLNI-- 90 (311)
Q Consensus 15 ~~~lp~~~~~~~-~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~i-- 90 (311)
...+|......+ +|+.|+++++.+.. |.....++.|+.|++..+.+.+ +.......++|+.|.+++...-.+..
T Consensus 128 i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~ls~N~i~~l~~~~ 205 (394)
T COG4886 128 ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLDLSGNKISDLPPEI 205 (394)
T ss_pred cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhheeccCCccccCchhh
Confidence 468888888885 99999999998864 3457789999999999997654 44444478999999999887544222
Q ss_pred eCCC-ceEEEeece-eee--eeecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEEeecC
Q 042404 91 CAPE-LKYLYLEGE-FKD--IHLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYLSIG 166 (311)
Q Consensus 91 ~~~~-L~~L~i~~~-~~~--~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~ 166 (311)
..++ |+.+.+.+. ... ..+....++..+.+...... .....++.+++++.|++..+.+..+..
T Consensus 206 ~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~------------~~~~~~~~l~~l~~L~~s~n~i~~i~~- 272 (394)
T COG4886 206 ELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE------------DLPESIGNLSNLETLDLSNNQISSISS- 272 (394)
T ss_pred hhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee------------eccchhccccccceecccccccccccc-
Confidence 2333 778877775 211 12335555555553333221 113446788889999999888766432
Q ss_pred CCCCCCCccccccceEEE
Q 042404 167 DDPGRLPITYNHLKVIEL 184 (311)
Q Consensus 167 ~~~~~~~~~f~~L~~L~l 184 (311)
.. ...+++.|.+
T Consensus 273 -----~~-~~~~l~~L~~ 284 (394)
T COG4886 273 -----LG-SLTNLRELDL 284 (394)
T ss_pred -----cc-ccCccCEEec
Confidence 12 4677777777
No 56
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=93.45 E-value=0.094 Score=52.50 Aligned_cols=122 Identities=24% Similarity=0.208 Sum_probs=65.1
Q ss_pred CCCcEEEccceeeCCCCCCCCCCcccEEEeeeeee-ChHHHHHHHhcCcccccccccccccee-EE--E-eCCCceEEEe
Q 042404 26 RKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLV-APEAIESLISSCPLLESLSLSYFDSLD-LN--I-CAPELKYLYL 100 (311)
Q Consensus 26 ~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~l~~c~~~~-~~--i-~~~~L~~L~i 100 (311)
...++..+-++.+........++.|++|-+..+.- -...-...+...|.|+.|++++|.... +. | ..-+||+|.+
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 56667777666654323334566788888877641 111122235567888888888776543 21 1 1235677766
Q ss_pred ece-eeee--eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeee
Q 042404 101 EGE-FKDI--HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIY 158 (311)
Q Consensus 101 ~~~-~~~~--~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~ 158 (311)
.++ ...+ .+.++.+|.++++....... .+......+++|++|.+...
T Consensus 603 ~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~-----------~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 603 SDTGISHLPSGLGNLKKLIYLNLEVTGRLE-----------SIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cCCCccccchHHHHHHhhheeccccccccc-----------cccchhhhcccccEEEeecc
Confidence 664 2222 23455556666655544321 11233344666777766544
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.10 E-value=0.021 Score=47.65 Aligned_cols=66 Identities=23% Similarity=0.251 Sum_probs=42.6
Q ss_pred cCCCcccCCCCcEEEccceeeCCCCCCCCCCcccEEEeeee--eeChHHHHHHHhcCcccccccccccc
Q 042404 18 VPSCLFNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQV--LVAPEAIESLISSCPLLESLSLSYFD 84 (311)
Q Consensus 18 lp~~~~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~L~l~~c~ 84 (311)
+....-....|..|++.++.++....+..+|+|++|.++.+ .+..+ +.-++..||+|++|.++.+.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~-l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGG-LEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred cccccccccchhhhhhhccceeecccCCCcchhhhhcccCCccccccc-ceehhhhCCceeEEeecCCc
Confidence 33433445566777777766655455667778888888887 34333 55556667888888887654
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.55 E-value=0.079 Score=44.81 Aligned_cols=41 Identities=27% Similarity=0.305 Sum_probs=27.4
Q ss_pred CCCCCcccEEEeeeeeeCh---HHHHHHHhcCcccccccccccc
Q 042404 44 FTGFPCLRSLNLHQVLVAP---EAIESLISSCPLLESLSLSYFD 84 (311)
Q Consensus 44 ~~~l~~L~~L~L~~~~~~~---~~l~~ll~~cp~Le~L~l~~c~ 84 (311)
+..||+|++.+|+.+.|.. +.+..++++...|++|.++.|.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 4466777777777776653 3456667777777777777664
No 59
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=92.42 E-value=0.026 Score=56.34 Aligned_cols=85 Identities=20% Similarity=0.223 Sum_probs=57.1
Q ss_pred ecCCCcc-cCCCCcEEEcccee-e-CCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccccee----EE
Q 042404 17 RVPSCLF-NCRKLTRLELFRCE-F-DPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLD----LN 89 (311)
Q Consensus 17 ~lp~~~~-~~~~L~~L~L~~~~-l-~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~----~~ 89 (311)
.+|..++ .++.|++|+|++|. + ..|..++.+-+|+.|+|+++.+. .++.-+.....|.+|++....... +.
T Consensus 561 ~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~ 638 (889)
T KOG4658|consen 561 EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGIL 638 (889)
T ss_pred hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccchh
Confidence 3444433 47888888888764 2 36777777888888888888775 344445667788888888766433 22
Q ss_pred EeCCCceEEEeece
Q 042404 90 ICAPELKYLYLEGE 103 (311)
Q Consensus 90 i~~~~L~~L~i~~~ 103 (311)
-..++||+|.+...
T Consensus 639 ~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 639 LELQSLRVLRLPRS 652 (889)
T ss_pred hhcccccEEEeecc
Confidence 22467888877763
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=92.29 E-value=0.23 Score=45.01 Aligned_cols=90 Identities=19% Similarity=0.236 Sum_probs=52.3
Q ss_pred ccCCCCcEEEccceeeCCCCCCCCCC-cccEEEeeeeeeChHHHHHHHhcCccccccccccccceeEEEeCCCceEEEee
Q 042404 23 FNCRKLTRLELFRCEFDPPLTFTGFP-CLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDLNICAPELKYLYLE 101 (311)
Q Consensus 23 ~~~~~L~~L~L~~~~l~~~~~~~~l~-~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~i~~~~L~~L~i~ 101 (311)
-.|..+++|++++|.+...+ .+| +|+.|.+.+|.-- ..++..+ .++|+.|.+.+|..+. .-.++|+.|.+.
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~--sLP~sLe~L~L~ 120 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLP---VLPNELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEIS--GLPESVRSLEIK 120 (426)
T ss_pred HHhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCc-ccCCchh--hhhhhheEccCccccc--ccccccceEEeC
Confidence 34788999999998765322 244 5999999876421 1122111 4689999999886543 112467777776
Q ss_pred ceeeeeeecC-CCCcceeEEE
Q 042404 102 GEFKDIHLES-TPLLVSMSIA 121 (311)
Q Consensus 102 ~~~~~~~i~~-~p~L~~l~l~ 121 (311)
+.... .+.. .++|++|.+.
T Consensus 121 ~n~~~-~L~~LPssLk~L~I~ 140 (426)
T PRK15386 121 GSATD-SIKNVPNGLTSLSIN 140 (426)
T ss_pred CCCCc-ccccCcchHhheecc
Confidence 53211 1222 2356666553
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.27 E-value=0.19 Score=42.15 Aligned_cols=61 Identities=23% Similarity=0.185 Sum_probs=41.6
Q ss_pred cCCCCcEEEccceeeC----CCCCCCCCCcccEEEeeeeeeCh-HHHHHHHhcCccccccccccccc
Q 042404 24 NCRKLTRLELFRCEFD----PPLTFTGFPCLRSLNLHQVLVAP-EAIESLISSCPLLESLSLSYFDS 85 (311)
Q Consensus 24 ~~~~L~~L~L~~~~l~----~~~~~~~l~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l~~c~~ 85 (311)
.+++|+.|.++.|.+. .+.-+-.+|+|++|.|+.+.+.+ ..+.- +...++|.+|++..|.-
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENLKSLDLFNCSV 128 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcchhhhhcccCCc
Confidence 3568999999988432 22223356999999999998775 22322 44577788888888863
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.17 E-value=0.069 Score=45.30 Aligned_cols=60 Identities=17% Similarity=0.104 Sum_probs=43.6
Q ss_pred cCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccc
Q 042404 24 NCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYF 83 (311)
Q Consensus 24 ~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c 83 (311)
.++.|++|.|+-|.+.-...+..|++|+.|.|..+.|.+-+--.-+.+.|+|+.|+|..+
T Consensus 39 kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred hcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 456788888888877654556778888888888887766333334668888888888764
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=89.10 E-value=0.25 Score=24.46 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=9.5
Q ss_pred CCcEEEccceeeC
Q 042404 27 KLTRLELFRCEFD 39 (311)
Q Consensus 27 ~L~~L~L~~~~l~ 39 (311)
+|++|+|++|.++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 4677888877765
No 64
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.75 E-value=0.059 Score=43.42 Aligned_cols=72 Identities=24% Similarity=0.237 Sum_probs=39.8
Q ss_pred cEEEeeeeeeChHHHHHHHhcCcccccccccccccee------EEEeCCCceEEEeeceee--e---eeecCCCCcceeE
Q 042404 51 RSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLD------LNICAPELKYLYLEGEFK--D---IHLESTPLLVSMS 119 (311)
Q Consensus 51 ~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~------~~i~~~~L~~L~i~~~~~--~---~~i~~~p~L~~l~ 119 (311)
+.++-+++.+..+.+.+ +.+++.++.|.+..|..++ +.--+|+|+.|++++|.. . -.+...++|+.+.
T Consensus 104 eaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 33344444444444554 4566777777777666443 333556777777776532 1 1234677777776
Q ss_pred EEEE
Q 042404 120 IAMY 123 (311)
Q Consensus 120 l~~~ 123 (311)
+.+-
T Consensus 183 l~~l 186 (221)
T KOG3864|consen 183 LYDL 186 (221)
T ss_pred hcCc
Confidence 6543
No 65
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=86.11 E-value=0.26 Score=45.20 Aligned_cols=101 Identities=23% Similarity=0.246 Sum_probs=66.4
Q ss_pred CcccCCCCcEEEccceeeCCCCC-CCCCCcccEEEeeeeeeCh-HHHHHHHhcCccccccccccccceeEE-E-eCCCce
Q 042404 21 CLFNCRKLTRLELFRCEFDPPLT-FTGFPCLRSLNLHQVLVAP-EAIESLISSCPLLESLSLSYFDSLDLN-I-CAPELK 96 (311)
Q Consensus 21 ~~~~~~~L~~L~L~~~~l~~~~~-~~~l~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l~~c~~~~~~-i-~~~~L~ 96 (311)
.+..+++|..|+++.+.+..... ..++++|+.|+++++.++. ..+ ..++.|+.|++.++....+. . ..++|+
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l----~~l~~L~~L~l~~N~i~~~~~~~~l~~L~ 165 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGL----STLTLLKELNLSGNLISDISGLESLKSLK 165 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheeccccccccccch----hhccchhhheeccCcchhccCCccchhhh
Confidence 35667888888888888775555 6778888888888888765 223 34556888888887654311 1 145667
Q ss_pred EEEeece-eeeee---ecCCCCcceeEEEEEEc
Q 042404 97 YLYLEGE-FKDIH---LESTPLLVSMSIAMYMT 125 (311)
Q Consensus 97 ~L~i~~~-~~~~~---i~~~p~L~~l~l~~~~~ 125 (311)
.+++.++ ...+. ....++++.+.++.+..
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCCch
Confidence 7776664 22222 25677777777766554
No 66
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=85.94 E-value=0.13 Score=47.25 Aligned_cols=100 Identities=26% Similarity=0.267 Sum_probs=59.3
Q ss_pred cCCCCcEEEccceeeCC-CCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccccee-EEE-eCCCceEEEe
Q 042404 24 NCRKLTRLELFRCEFDP-PLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLD-LNI-CAPELKYLYL 100 (311)
Q Consensus 24 ~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~-~~i-~~~~L~~L~i 100 (311)
.+..+..+.+..+.+.. -..+..+.+|+.|.+..+.+.. +...+..|++|+.|++++..... ..+ ..+.|+.|.+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhh--cccchhhhhcchheeccccccccccchhhccchhhhee
Confidence 45566666666666654 2335677888888888876654 22225578888888888765433 111 1234777777
Q ss_pred ecee-eee-eecCCCCcceeEEEEEEc
Q 042404 101 EGEF-KDI-HLESTPLLVSMSIAMYMT 125 (311)
Q Consensus 101 ~~~~-~~~-~i~~~p~L~~l~l~~~~~ 125 (311)
.++. ..+ .+...++|+.++++++..
T Consensus 148 ~~N~i~~~~~~~~l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 148 SGNLISDISGLESLKSLKLLDLSYNRI 174 (414)
T ss_pred ccCcchhccCCccchhhhcccCCcchh
Confidence 7742 222 233466666676666554
No 67
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.83 E-value=0.51 Score=23.76 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=12.0
Q ss_pred CCcccEEEeeeeeeChHHHHH
Q 042404 47 FPCLRSLNLHQVLVAPEAIES 67 (311)
Q Consensus 47 l~~L~~L~L~~~~~~~~~l~~ 67 (311)
+++|++|+|++|.++++.+..
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHH
Confidence 356777777777776665543
No 68
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=85.37 E-value=0.4 Score=24.78 Aligned_cols=15 Identities=40% Similarity=0.673 Sum_probs=11.8
Q ss_pred Cccccccccccccce
Q 042404 72 CPLLESLSLSYFDSL 86 (311)
Q Consensus 72 cp~Le~L~l~~c~~~ 86 (311)
||+|++|+|.+|..+
T Consensus 1 c~~L~~L~l~~C~~i 15 (26)
T smart00367 1 CPNLRELDLSGCTNI 15 (26)
T ss_pred CCCCCEeCCCCCCCc
Confidence 788888888888654
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.42 E-value=0.32 Score=39.31 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=54.8
Q ss_pred eecCCCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeee-eChHHHHHHHhcCcccccccccccccee-----
Q 042404 16 FRVPSCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVL-VAPEAIESLISSCPLLESLSLSYFDSLD----- 87 (311)
Q Consensus 16 ~~lp~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~----- 87 (311)
|.+|..-..--.++.++=+++.+. -...+..++.++.|.+.+|. +.+..+..+=...|+|+.|+|++|..++
T Consensus 91 ~~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~ 170 (221)
T KOG3864|consen 91 FSLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA 170 (221)
T ss_pred ecCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH
Confidence 355554333334555554444332 11235578888999999887 6776677765568999999999997544
Q ss_pred EEEeCCCceEEEeec
Q 042404 88 LNICAPELKYLYLEG 102 (311)
Q Consensus 88 ~~i~~~~L~~L~i~~ 102 (311)
.--..++|+.|.+.+
T Consensus 171 ~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 171 CLLKLKNLRRLHLYD 185 (221)
T ss_pred HHHHhhhhHHHHhcC
Confidence 112346777777665
No 70
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=81.09 E-value=0.17 Score=48.62 Aligned_cols=40 Identities=25% Similarity=0.213 Sum_probs=22.3
Q ss_pred CcccCCCCcEEEccceeeCCCCCC--CCCCcccEEEeeeeeeC
Q 042404 21 CLFNCRKLTRLELFRCEFDPPLTF--TGFPCLRSLNLHQVLVA 61 (311)
Q Consensus 21 ~~~~~~~L~~L~L~~~~l~~~~~~--~~l~~L~~L~L~~~~~~ 61 (311)
.+..|..|++|+|++|++...+-+ .++. |..|.|+++.++
T Consensus 204 ~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~ 245 (1096)
T KOG1859|consen 204 NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALT 245 (1096)
T ss_pred HHHhcccccccccccchhccccccchhhhh-heeeeecccHHH
Confidence 355667777777777766422222 2333 666666666543
No 71
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=80.93 E-value=3.7 Score=25.18 Aligned_cols=38 Identities=29% Similarity=0.423 Sum_probs=30.1
Q ss_pred ccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEE
Q 042404 176 YNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHIS 214 (311)
Q Consensus 176 f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~ 214 (311)
..+|+.+.+.+ -.+...+++-+..++++++.|+++.|.
T Consensus 13 ~s~Lk~v~~~~-f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 13 LSHLKFVEIKG-FRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred hheeEEEEEEe-eeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 47888888843 334555788889999999999999986
No 72
>PRK15386 type III secretion protein GogB; Provisional
Probab=80.79 E-value=1.8 Score=39.33 Aligned_cols=10 Identities=10% Similarity=0.225 Sum_probs=6.1
Q ss_pred CCcceEEEEe
Q 042404 206 PNLKELHISG 215 (311)
Q Consensus 206 p~L~~L~i~~ 215 (311)
+.|+.|++..
T Consensus 177 ~SLk~L~ls~ 186 (426)
T PRK15386 177 ESLQSITLHI 186 (426)
T ss_pred ccCcEEEecc
Confidence 3666676653
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=79.05 E-value=1.4 Score=20.22 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=6.0
Q ss_pred CCcEEEccceeeC
Q 042404 27 KLTRLELFRCEFD 39 (311)
Q Consensus 27 ~L~~L~L~~~~l~ 39 (311)
+|+.|+|++|.+.
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4666666666543
No 74
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=78.88 E-value=0.097 Score=48.70 Aligned_cols=66 Identities=21% Similarity=0.184 Sum_probs=41.3
Q ss_pred ecCCCcccCCCCcEEEccceeeC-CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccc
Q 042404 17 RVPSCLFNCRKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDS 85 (311)
Q Consensus 17 ~lp~~~~~~~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 85 (311)
.+|.++.+...|+.|+|+.|.+. .|..+ .+--|+.|-+.++.+..- +.-+...+.|.+|+.++|+.
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~l-C~lpLkvli~sNNkl~~l--p~~ig~~~tl~~ld~s~nei 178 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDGL-CDLPLKVLIVSNNKLTSL--PEEIGLLPTLAHLDVSKNEI 178 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChhh-hcCcceeEEEecCccccC--CcccccchhHHHhhhhhhhh
Confidence 56777777788888888887775 33333 333478888888765431 11123566777777776653
No 75
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=74.59 E-value=8 Score=25.46 Aligned_cols=41 Identities=29% Similarity=0.333 Sum_probs=31.7
Q ss_pred ccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEecc
Q 042404 176 YNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSS 217 (311)
Q Consensus 176 f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~ 217 (311)
..+|+.+++.+ -.+...+++-+..+++++|.|+++.|....
T Consensus 4 ~~~Lk~v~i~~-f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~ 44 (72)
T smart00579 4 LSSLEVLEIKG-YRGTEEEKELVKYFLENAPCLKKLTISVET 44 (72)
T ss_pred hheEEEEEEEe-ccCcHHHHHHHHHHHhcchhheEEEEEeec
Confidence 35688888844 234556788899999999999999998654
No 76
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=74.03 E-value=12 Score=32.13 Aligned_cols=71 Identities=23% Similarity=0.245 Sum_probs=40.5
Q ss_pred hcCCCcceEEEEeccCCcccccCCCchhhcccccCcccccceeEEEEEeecCCcch--HHHHHHHHccCcccceEEEEec
Q 042404 203 TNSPNLKELHISGSSNTLAAIEAPDLDFWEKECHADCSFKQLKLVKMTDISGVPHE--MELIKFLLSNSPVLEIMSITPC 280 (311)
Q Consensus 203 ~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~v~i~~~~g~~~~--~~l~~~ll~~a~~Le~l~i~~~ 280 (311)
.+-|.|+.+.+..+... +.+..+|..- .+ .+..||+|+|..- |-+.+ --++-+-+.++.+||-+.|...
T Consensus 154 a~kp~Le~vicgrNRle-----ngs~~~~a~~--l~-sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDN 224 (388)
T COG5238 154 ADKPKLEVVICGRNRLE-----NGSKELSAAL--LE-SHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDN 224 (388)
T ss_pred ccCCCceEEEeccchhc-----cCcHHHHHHH--HH-hhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeecccc
Confidence 45678877777655433 2344555432 11 2357888887632 32222 3455555778888888888765
Q ss_pred cc
Q 042404 281 TF 282 (311)
Q Consensus 281 ~~ 282 (311)
+.
T Consensus 225 tf 226 (388)
T COG5238 225 TF 226 (388)
T ss_pred ch
Confidence 54
No 77
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=68.10 E-value=0.098 Score=48.68 Aligned_cols=107 Identities=19% Similarity=0.179 Sum_probs=49.4
Q ss_pred ecCCCcccCCCCcEEEccceeeC-CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccccee--EEEeCC
Q 042404 17 RVPSCLFNCRKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLD--LNICAP 93 (311)
Q Consensus 17 ~lp~~~~~~~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~--~~i~~~ 93 (311)
+++..-....--...+|+.|++. .|..+..|-.|..|.|+.+.+..- ..-+.+...|..|+|+....-. ..+.--
T Consensus 66 pr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~i--p~~i~~L~~lt~l~ls~NqlS~lp~~lC~l 143 (722)
T KOG0532|consen 66 PRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTI--PEAICNLEALTFLDLSSNQLSHLPDGLCDL 143 (722)
T ss_pred CCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceec--chhhhhhhHHHHhhhccchhhcCChhhhcC
Confidence 33333333344445677777764 455556677777777776654321 1112334445555554432110 000001
Q ss_pred CceEEEeece-ee--eeeecCCCCcceeEEEEEEc
Q 042404 94 ELKYLYLEGE-FK--DIHLESTPLLVSMSIAMYMT 125 (311)
Q Consensus 94 ~L~~L~i~~~-~~--~~~i~~~p~L~~l~l~~~~~ 125 (311)
-|+.|-+..+ .. .-.++..+.|..++.+.+..
T Consensus 144 pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei 178 (722)
T KOG0532|consen 144 PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI 178 (722)
T ss_pred cceeEEEecCccccCCcccccchhHHHhhhhhhhh
Confidence 2344443332 11 12234666666666665554
No 78
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=66.81 E-value=5.1 Score=21.02 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=14.0
Q ss_pred CcccEEEeeeeeeChHHHHH
Q 042404 48 PCLRSLNLHQVLVAPEAIES 67 (311)
Q Consensus 48 ~~L~~L~L~~~~~~~~~l~~ 67 (311)
++|+.|+|+++.+.++....
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~ 21 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARA 21 (28)
T ss_pred CccCEEECCCCCCCHHHHHH
Confidence 46788888888877655543
No 79
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=66.33 E-value=0.85 Score=34.76 Aligned_cols=76 Identities=28% Similarity=0.350 Sum_probs=52.6
Q ss_pred cccCCCCcEEEccceeeC-CCCCC-CCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccccee-EEEeCCCceEE
Q 042404 22 LFNCRKLTRLELFRCEFD-PPLTF-TGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLD-LNICAPELKYL 98 (311)
Q Consensus 22 ~~~~~~L~~L~L~~~~l~-~~~~~-~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~-~~i~~~~L~~L 98 (311)
+.....|+..+|++|.+. .|+.+ ..||.+++|+|.++.+.+- +.-++..|.|+.|.+..+.... .++-+| |..|
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv--PeE~Aam~aLr~lNl~~N~l~~~p~vi~~-L~~l 125 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV--PEELAAMPALRSLNLRFNPLNAEPRVIAP-LIKL 125 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc--hHHHhhhHHhhhcccccCccccchHHHHH-HHhH
Confidence 344567778899999886 34444 3678999999999987653 2227889999999999876544 333344 5444
Q ss_pred Ee
Q 042404 99 YL 100 (311)
Q Consensus 99 ~i 100 (311)
.+
T Consensus 126 ~~ 127 (177)
T KOG4579|consen 126 DM 127 (177)
T ss_pred HH
Confidence 43
No 80
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=65.11 E-value=1.3 Score=33.78 Aligned_cols=72 Identities=18% Similarity=0.132 Sum_probs=40.6
Q ss_pred EEEccceeeC-C---CCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccccee--EE-EeCCCceEEEeec
Q 042404 30 RLELFRCEFD-P---PLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLD--LN-ICAPELKYLYLEG 102 (311)
Q Consensus 30 ~L~L~~~~l~-~---~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~--~~-i~~~~L~~L~i~~ 102 (311)
.++|++|.+. . +........|++.+|+++.+.+- -.++....|.+++|.+......+ .. ...|.|+.+++..
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~f-p~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKF-PKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF 109 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccchhhhC-CHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc
Confidence 4566677543 2 22234556677777777766432 33445567788888887765433 11 1234566655554
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=48.26 E-value=16 Score=18.40 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=9.9
Q ss_pred CCCcEEEccceeeC
Q 042404 26 RKLTRLELFRCEFD 39 (311)
Q Consensus 26 ~~L~~L~L~~~~l~ 39 (311)
++|++|+|++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 46777777777665
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=48.26 E-value=16 Score=18.40 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=9.9
Q ss_pred CCCcEEEccceeeC
Q 042404 26 RKLTRLELFRCEFD 39 (311)
Q Consensus 26 ~~L~~L~L~~~~l~ 39 (311)
++|++|+|++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 46777777777665
No 83
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=44.23 E-value=0.23 Score=46.28 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=18.1
Q ss_pred CcEEEccceeeCCC------CCCCCCCcccEEEeeeeeeChHHH
Q 042404 28 LTRLELFRCEFDPP------LTFTGFPCLRSLNLHQVLVAPEAI 65 (311)
Q Consensus 28 L~~L~L~~~~l~~~------~~~~~l~~L~~L~L~~~~~~~~~l 65 (311)
+..|.|.+|.+.+- ..+...+.|..|+++++.+.++..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~ 132 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGA 132 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhH
Confidence 45555555554321 113344555555555555554433
No 84
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=30.28 E-value=31 Score=25.16 Aligned_cols=62 Identities=19% Similarity=0.353 Sum_probs=27.6
Q ss_pred cCCCc-ccCCCCcEEEccceeeC-CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccc
Q 042404 18 VPSCL-FNCRKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLS 81 (311)
Q Consensus 18 lp~~~-~~~~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 81 (311)
+|... ..|++|+.+.+....-. ....+.+++.|+.+.+... +..- -...+.+|+.|+.+.+.
T Consensus 3 i~~~~F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i-~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSI-GDNAFSNCKSLESITFP 66 (129)
T ss_dssp E-TTTTTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE--TTTTTT-TT-EEEEET
T ss_pred ECHHHHhCCCCCCEEEECCCeeEeChhhccccccccccccccc-cccc-ceeeeeccccccccccc
Confidence 44443 45668888887742111 2334667777888877653 2110 01225566667766665
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=27.62 E-value=35 Score=17.63 Aligned_cols=13 Identities=31% Similarity=0.370 Sum_probs=7.4
Q ss_pred CcccEEEeeeeee
Q 042404 48 PCLRSLNLHQVLV 60 (311)
Q Consensus 48 ~~L~~L~L~~~~~ 60 (311)
.+|+.|+|..+.+
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 4556666666554
No 86
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=20.70 E-value=60 Score=16.84 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=10.9
Q ss_pred HHHhcCcccccccccc
Q 042404 67 SLISSCPLLESLSLSY 82 (311)
Q Consensus 67 ~ll~~cp~Le~L~l~~ 82 (311)
.++..+|+|+.|+...
T Consensus 7 ~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 7 KVIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHHCCccceecccc
Confidence 3566788888887653
Done!