Query 042404
Match_columns 311
No_of_seqs 143 out of 2039
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 09:53:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042404.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042404hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.4 5.5E-14 1.9E-18 123.2 2.9 190 2-217 82-288 (328)
2 2z80_A TOLL-like receptor 2, v 99.3 4.2E-12 1.4E-16 112.2 8.4 120 2-124 53-185 (353)
3 4fmz_A Internalin; leucine ric 99.2 5.9E-12 2E-16 110.8 4.7 116 2-123 45-165 (347)
4 3zyi_A Leucine-rich repeat-con 99.2 4E-12 1.4E-16 116.2 1.9 58 26-84 75-134 (452)
5 3ogk_B Coronatine-insensitive 99.2 7.9E-12 2.7E-16 117.8 3.0 100 3-102 140-252 (592)
6 1ozn_A Reticulon 4 receptor; N 99.2 9.8E-12 3.3E-16 106.5 3.0 214 16-265 24-250 (285)
7 2id5_A Lingo-1, leucine rich r 99.2 1.1E-11 3.7E-16 113.9 3.3 240 2-281 33-307 (477)
8 3zyj_A Leucine-rich repeat-con 99.1 5.7E-12 2E-16 114.7 1.3 104 16-122 56-169 (440)
9 4fcg_A Uncharacterized protein 99.1 2.3E-12 7.7E-17 112.9 -1.7 192 1-216 104-311 (328)
10 3rgz_A Protein brassinosteroid 99.1 8.6E-12 3E-16 121.3 1.9 147 2-160 101-259 (768)
11 2p1m_B Transport inhibitor res 99.1 1.5E-11 5.2E-16 115.9 3.2 100 24-123 103-221 (594)
12 3zyi_A Leucine-rich repeat-con 99.1 1.2E-11 4.1E-16 113.0 2.4 121 2-124 76-207 (452)
13 1ogq_A PGIP-2, polygalacturona 99.1 1E-11 3.5E-16 108.0 1.2 193 2-218 51-256 (313)
14 2z80_A TOLL-like receptor 2, v 99.1 2.7E-10 9.2E-15 100.5 10.2 181 16-219 44-235 (353)
15 2id5_A Lingo-1, leucine rich r 99.1 8.5E-11 2.9E-15 108.0 7.1 203 2-217 81-307 (477)
16 3o6n_A APL1; leucine-rich repe 99.1 4.3E-11 1.5E-15 107.1 4.7 189 2-217 94-306 (390)
17 2z81_A CD282 antigen, TOLL-lik 99.1 1.8E-09 6.1E-14 100.8 15.7 233 15-279 17-260 (549)
18 1ogq_A PGIP-2, polygalacturona 99.1 2.1E-11 7.2E-16 105.9 2.4 98 26-124 50-160 (313)
19 1o6v_A Internalin A; bacterial 99.1 4.5E-11 1.5E-15 109.6 4.2 114 2-121 47-164 (466)
20 4fmz_A Internalin; leucine ric 99.1 2.5E-11 8.4E-16 106.8 2.1 228 2-280 111-343 (347)
21 3zyj_A Leucine-rich repeat-con 99.1 1.2E-11 4.1E-16 112.6 -0.1 120 2-124 65-196 (440)
22 1ozn_A Reticulon 4 receptor; N 99.1 4.1E-11 1.4E-15 102.6 3.1 195 2-220 33-239 (285)
23 1h6u_A Internalin H; cell adhe 99.1 4.7E-11 1.6E-15 103.5 3.5 184 2-218 42-229 (308)
24 3v47_A TOLL-like receptor 5B a 99.1 3.9E-11 1.3E-15 109.5 3.0 100 2-102 55-163 (455)
25 3v47_A TOLL-like receptor 5B a 99.1 3.9E-11 1.3E-15 109.5 3.0 121 2-124 31-165 (455)
26 3oja_B Anopheles plasmodium-re 99.1 5.3E-11 1.8E-15 112.5 3.6 63 21-84 94-158 (597)
27 2p1m_B Transport inhibitor res 99.1 9.9E-11 3.4E-15 110.3 5.3 83 2-84 131-222 (594)
28 1z7x_W Ribonuclease inhibitor; 99.0 1.7E-12 5.9E-17 118.6 -7.0 83 2-84 4-96 (461)
29 2z66_A Variable lymphocyte rec 99.0 3.5E-11 1.2E-15 104.0 1.6 181 15-217 19-210 (306)
30 2ast_B S-phase kinase-associat 99.0 1E-11 3.5E-16 108.8 -2.1 221 22-273 64-299 (336)
31 1o6v_A Internalin A; bacterial 99.0 3.5E-10 1.2E-14 103.7 8.0 227 2-281 69-298 (466)
32 3rgz_A Protein brassinosteroid 99.0 1.5E-11 5.1E-16 119.7 -1.3 132 17-160 409-550 (768)
33 3o6n_A APL1; leucine-rich repe 99.0 4.1E-11 1.4E-15 107.2 1.6 121 2-125 46-177 (390)
34 3t6q_A CD180 antigen; protein- 99.0 1.3E-11 4.3E-16 116.9 -2.6 106 17-123 268-386 (606)
35 2ast_B S-phase kinase-associat 99.0 4.2E-12 1.4E-16 111.2 -5.5 195 2-216 71-282 (336)
36 3o53_A Protein LRIM1, AGAP0063 99.0 9.9E-12 3.4E-16 108.2 -3.2 96 25-124 33-131 (317)
37 3oja_A Leucine-rich immune mol 99.0 2.9E-11 9.9E-16 111.5 -0.3 174 27-217 35-225 (487)
38 3oja_B Anopheles plasmodium-re 99.0 3.9E-11 1.3E-15 113.4 0.4 122 2-126 52-184 (597)
39 2ca6_A RAN GTPase-activating p 99.0 1.6E-11 5.5E-16 109.8 -2.4 253 16-283 22-316 (386)
40 2o6q_A Variable lymphocyte rec 99.0 5.5E-11 1.9E-15 101.0 1.0 131 16-160 29-169 (270)
41 2ca6_A RAN GTPase-activating p 99.0 1E-11 3.4E-16 111.1 -3.8 234 2-251 33-312 (386)
42 1z7x_W Ribonuclease inhibitor; 99.0 5.1E-12 1.7E-16 115.5 -6.4 216 1-217 28-295 (461)
43 4eco_A Uncharacterized protein 99.0 1.5E-10 5.3E-15 110.2 3.2 122 1-124 206-364 (636)
44 3bz5_A Internalin-J, INLJ; leu 99.0 1.9E-10 6.4E-15 105.2 3.6 114 2-123 43-158 (457)
45 2z62_A TOLL-like receptor 4, v 99.0 6E-11 2E-15 101.0 -0.1 135 15-162 19-163 (276)
46 2z63_A TOLL-like receptor 4, v 99.0 3.1E-10 1.1E-14 106.3 4.6 189 2-216 283-480 (570)
47 3ogk_B Coronatine-insensitive 99.0 1.8E-10 6.2E-15 108.5 3.0 232 19-281 263-524 (592)
48 1xku_A Decorin; proteoglycan, 98.9 2.7E-10 9.2E-15 99.5 3.3 200 2-218 53-275 (330)
49 4ecn_A Leucine-rich repeat pro 98.9 3.2E-10 1.1E-14 111.0 3.5 125 1-125 448-607 (876)
50 3rfs_A Internalin B, repeat mo 98.9 1.6E-10 5.3E-15 98.3 0.9 171 24-218 39-217 (272)
51 2z81_A CD282 antigen, TOLL-lik 98.9 2.6E-10 8.9E-15 106.5 2.3 211 2-217 27-262 (549)
52 4ezg_A Putative uncharacterize 98.9 2.4E-10 8.3E-15 92.3 1.9 140 23-185 41-189 (197)
53 3t6q_A CD180 antigen; protein- 98.9 2.3E-10 7.9E-15 108.2 1.9 198 2-218 279-488 (606)
54 4ecn_A Leucine-rich repeat pro 98.9 1.2E-10 4.1E-15 114.0 -0.3 144 2-160 549-709 (876)
55 3bz5_A Internalin-J, INLJ; leu 98.9 5.6E-10 1.9E-14 102.1 4.0 136 2-160 65-203 (457)
56 1h6u_A Internalin H; cell adhe 98.9 4.5E-10 1.5E-14 97.3 3.0 185 23-251 38-226 (308)
57 3vq2_A TLR4, TOLL-like recepto 98.9 2E-09 7E-14 101.7 7.3 36 178-217 205-240 (606)
58 3vq2_A TLR4, TOLL-like recepto 98.9 9.6E-11 3.3E-15 110.8 -2.1 76 2-84 286-361 (606)
59 2o6q_A Variable lymphocyte rec 98.9 4.8E-10 1.6E-14 95.2 2.2 166 2-186 38-214 (270)
60 1xku_A Decorin; proteoglycan, 98.9 2E-10 6.8E-15 100.4 -0.5 177 16-217 44-227 (330)
61 2z62_A TOLL-like receptor 4, v 98.9 2.1E-10 7.2E-15 97.6 -0.3 197 2-220 29-238 (276)
62 2xwt_C Thyrotropin receptor; s 98.9 8.9E-10 3E-14 91.7 3.1 176 16-217 24-216 (239)
63 2z63_A TOLL-like receptor 4, v 98.8 9.2E-10 3.1E-14 103.2 3.2 188 4-217 260-456 (570)
64 3j0a_A TOLL-like receptor 5; m 98.8 1.7E-09 5.8E-14 106.3 5.2 156 2-161 267-439 (844)
65 4eco_A Uncharacterized protein 98.8 2.7E-10 9.1E-15 108.5 -1.3 196 2-216 331-546 (636)
66 3j0a_A TOLL-like receptor 5; m 98.8 5.7E-10 1.9E-14 109.7 0.9 101 2-103 49-158 (844)
67 2z66_A Variable lymphocyte rec 98.8 3.8E-10 1.3E-14 97.5 -0.7 198 2-220 53-262 (306)
68 2ft3_A Biglycan; proteoglycan, 98.8 4.5E-10 1.5E-14 98.2 -0.4 199 2-218 55-276 (332)
69 1p9a_G Platelet glycoprotein I 98.8 1.9E-09 6.5E-14 92.5 3.5 211 22-269 6-224 (290)
70 3goz_A Leucine-rich repeat-con 98.8 8.5E-11 2.9E-15 104.2 -5.6 246 18-280 14-294 (362)
71 1h6t_A Internalin B; cell adhe 98.8 5.8E-10 2E-14 95.8 -0.2 165 24-218 44-212 (291)
72 1ziw_A TOLL-like receptor 3; i 98.8 3.6E-10 1.2E-14 108.3 -1.8 35 2-37 330-364 (680)
73 3m19_A Variable lymphocyte rec 98.8 2.4E-09 8E-14 89.9 3.1 152 15-185 26-187 (251)
74 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 2.2E-09 7.4E-14 100.7 2.8 41 175-218 375-415 (562)
75 3oja_A Leucine-rich immune mol 98.8 1.1E-09 3.8E-14 100.9 0.8 159 46-218 32-203 (487)
76 3o53_A Protein LRIM1, AGAP0063 98.8 6E-10 2E-14 96.9 -1.0 230 2-278 35-270 (317)
77 1wwl_A Monocyte differentiatio 98.7 4.4E-10 1.5E-14 97.5 -2.4 183 16-218 78-286 (312)
78 1wwl_A Monocyte differentiatio 98.7 1.3E-10 4.4E-15 100.9 -5.8 190 2-218 96-308 (312)
79 4ezg_A Putative uncharacterize 98.7 7.9E-09 2.7E-13 83.3 4.9 143 2-161 45-194 (197)
80 2z7x_B TOLL-like receptor 1, v 98.7 2.9E-08 9.8E-13 92.0 9.0 81 23-103 321-409 (520)
81 1ziw_A TOLL-like receptor 3; i 98.7 1.6E-09 5.5E-14 103.8 0.4 122 2-125 382-516 (680)
82 1p9a_G Platelet glycoprotein I 98.7 1.1E-09 3.7E-14 94.1 -0.9 191 2-221 11-210 (290)
83 1h6t_A Internalin B; cell adhe 98.7 4.6E-09 1.6E-13 90.1 3.1 159 2-186 47-209 (291)
84 1m9s_A Internalin B; cell inva 98.7 1.6E-09 5.6E-14 102.2 0.2 164 24-217 41-208 (605)
85 2z7x_B TOLL-like receptor 1, v 98.7 2.1E-08 7.1E-13 93.0 7.5 128 15-159 12-149 (520)
86 2ft3_A Biglycan; proteoglycan, 98.7 9E-10 3.1E-14 96.3 -2.6 196 2-219 79-307 (332)
87 3goz_A Leucine-rich repeat-con 98.7 1.4E-10 4.9E-15 102.7 -7.9 206 2-217 23-264 (362)
88 1m9s_A Internalin B; cell inva 98.7 6.6E-09 2.3E-13 98.0 2.9 141 21-184 60-204 (605)
89 3m19_A Variable lymphocyte rec 98.7 2.8E-09 9.7E-14 89.3 0.2 144 2-159 36-190 (251)
90 3g06_A SSPH2 (leucine-rich rep 98.7 6.5E-08 2.2E-12 91.5 9.4 109 2-123 62-171 (622)
91 3a79_B TLR6, VLRB.59, TOLL-lik 98.6 6.6E-08 2.3E-12 90.6 9.0 107 15-125 43-158 (562)
92 2ell_A Acidic leucine-rich nuc 98.6 4.8E-09 1.7E-13 82.2 0.9 135 2-161 25-160 (168)
93 2xwt_C Thyrotropin receptor; s 98.6 7.3E-09 2.5E-13 86.1 1.8 186 2-215 32-235 (239)
94 2je0_A Acidic leucine-rich nuc 98.6 3.6E-09 1.2E-13 81.2 -0.4 82 2-84 18-99 (149)
95 3rfs_A Internalin B, repeat mo 98.6 6E-09 2E-13 88.5 0.6 185 2-218 42-234 (272)
96 4glp_A Monocyte differentiatio 98.6 6.3E-10 2.2E-14 96.4 -6.4 176 24-219 89-285 (310)
97 4glp_A Monocyte differentiatio 98.6 3E-08 1E-12 85.8 4.0 162 2-185 118-302 (310)
98 1xeu_A Internalin C; cellular 98.6 1.4E-08 4.8E-13 85.8 1.5 99 21-122 36-137 (263)
99 4g8a_A TOLL-like receptor 4; l 98.5 2.1E-07 7.3E-12 87.9 8.3 97 27-124 53-159 (635)
100 2v9t_B SLIT homolog 2 protein 98.5 2.7E-08 9.1E-13 81.7 1.7 157 15-206 23-181 (220)
101 1xeu_A Internalin C; cellular 98.4 2.7E-08 9.4E-13 84.0 0.6 140 2-161 42-185 (263)
102 3e6j_A Variable lymphocyte rec 98.4 4.8E-08 1.6E-12 80.7 1.5 154 15-204 31-187 (229)
103 2ra8_A Uncharacterized protein 98.4 2.4E-08 8.1E-13 88.2 -1.1 185 26-217 107-318 (362)
104 3cvr_A Invasion plasmid antige 98.4 4.7E-08 1.6E-12 91.4 0.4 112 2-125 60-172 (571)
105 3g06_A SSPH2 (leucine-rich rep 98.4 1.7E-07 5.9E-12 88.6 4.3 60 145-219 238-297 (622)
106 4g8a_A TOLL-like receptor 4; l 98.4 7.2E-08 2.5E-12 91.2 1.1 194 2-216 53-259 (635)
107 2o6s_A Variable lymphocyte rec 98.3 1.1E-07 3.9E-12 77.0 1.6 156 15-217 19-176 (208)
108 4ay9_X Follicle-stimulating ho 98.3 8.3E-08 2.8E-12 84.5 0.8 181 15-218 21-214 (350)
109 2v70_A SLIT-2, SLIT homolog 2 98.3 1.6E-07 5.5E-12 77.0 2.1 132 16-161 24-166 (220)
110 2ell_A Acidic leucine-rich nuc 98.3 4E-08 1.4E-12 76.9 -2.0 128 25-186 23-156 (168)
111 2v9t_B SLIT homolog 2 protein 98.3 1.3E-07 4.5E-12 77.5 1.0 81 2-85 33-116 (220)
112 2xot_A Amphoterin-induced prot 98.3 1.3E-07 4.6E-12 83.5 1.0 137 16-163 31-178 (361)
113 1jl5_A Outer protein YOPM; leu 98.3 1.5E-07 5.1E-12 85.9 0.8 116 2-125 132-249 (454)
114 3e4g_A ATP synthase subunit S, 98.3 3.6E-07 1.2E-11 71.6 2.9 71 16-86 51-127 (176)
115 2v70_A SLIT-2, SLIT homolog 2 98.2 1.8E-07 6.2E-12 76.7 0.9 158 28-203 13-179 (220)
116 3e6j_A Variable lymphocyte rec 98.2 4.7E-07 1.6E-11 74.6 2.5 81 2-84 41-123 (229)
117 2je0_A Acidic leucine-rich nuc 98.2 8.3E-08 2.8E-12 73.5 -2.2 58 25-85 16-76 (149)
118 2o6s_A Variable lymphocyte rec 98.2 3.2E-07 1.1E-11 74.4 0.9 80 2-84 29-111 (208)
119 1jl5_A Outer protein YOPM; leu 98.2 1.4E-06 4.7E-11 79.4 5.0 190 2-219 174-370 (454)
120 1ds9_A Outer arm dynein; leuci 98.1 1.9E-07 6.4E-12 75.2 -1.3 61 21-83 43-103 (198)
121 2xot_A Amphoterin-induced prot 98.1 5.1E-07 1.8E-11 79.7 1.1 146 2-161 40-202 (361)
122 1a9n_A U2A', U2A'; complex (nu 98.1 2.9E-07 1E-11 72.6 -0.9 127 23-160 16-152 (176)
123 2wfh_A SLIT homolog 2 protein 98.1 8.1E-07 2.8E-11 71.2 1.4 107 15-124 22-137 (193)
124 1a9n_A U2A', U2A'; complex (nu 98.0 3.3E-07 1.1E-11 72.3 -1.5 57 27-84 43-99 (176)
125 3un9_A NLR family member X1; l 98.0 5.4E-08 1.9E-12 86.4 -6.9 99 111-218 153-251 (372)
126 2wfh_A SLIT homolog 2 protein 98.0 1.5E-06 5.3E-11 69.6 1.8 141 28-204 12-153 (193)
127 4ay9_X Follicle-stimulating ho 98.0 8.4E-07 2.9E-11 78.0 -0.5 197 1-214 30-254 (350)
128 1w8a_A SLIT protein; signaling 97.9 1.8E-06 6.2E-11 69.1 0.4 67 15-84 20-89 (192)
129 1w8a_A SLIT protein; signaling 97.9 2.7E-06 9.3E-11 68.0 1.4 80 2-84 30-113 (192)
130 3cvr_A Invasion plasmid antige 97.9 5.7E-06 2E-10 77.3 3.8 157 2-185 81-238 (571)
131 1dce_A Protein (RAB geranylger 97.9 1.8E-06 6E-11 80.9 0.3 105 27-161 442-546 (567)
132 2o6r_A Variable lymphocyte rec 97.9 3E-06 1E-10 66.7 1.0 67 15-84 19-87 (177)
133 2o6r_A Variable lymphocyte rec 97.8 4.9E-06 1.7E-10 65.4 1.8 80 2-84 29-111 (177)
134 3e4g_A ATP synthase subunit S, 97.8 4.6E-06 1.6E-10 65.3 1.1 83 2-86 62-152 (176)
135 2ra8_A Uncharacterized protein 97.7 7.5E-06 2.6E-10 72.2 1.4 80 111-200 250-329 (362)
136 3g39_A Variable lymphocyte rec 97.7 1E-05 3.6E-10 63.2 2.0 67 15-84 21-89 (170)
137 1dce_A Protein (RAB geranylger 97.7 5.9E-06 2E-10 77.3 0.6 111 3-119 443-566 (567)
138 3sb4_A Hypothetical leucine ri 97.7 6.4E-05 2.2E-09 65.2 6.9 164 25-213 100-328 (329)
139 3g39_A Variable lymphocyte rec 97.7 1.7E-05 5.9E-10 62.0 2.9 80 2-84 31-113 (170)
140 2r9u_A Variable lymphocyte rec 97.7 1.2E-05 4.1E-10 63.2 1.9 67 15-84 24-92 (174)
141 2r9u_A Variable lymphocyte rec 97.7 1.9E-05 6.4E-10 62.0 3.0 80 2-84 34-116 (174)
142 4b8c_D Glucose-repressible alc 97.6 3.4E-06 1.2E-10 81.3 -3.3 108 17-126 215-329 (727)
143 1ds9_A Outer arm dynein; leuci 97.5 1.1E-05 3.8E-10 64.7 -0.3 78 2-85 49-127 (198)
144 2ifg_A High affinity nerve gro 97.3 4.3E-05 1.5E-09 66.7 1.1 86 15-102 21-112 (347)
145 4b8c_D Glucose-repressible alc 97.2 2.9E-05 9.8E-10 74.9 -1.2 97 2-102 225-325 (727)
146 3sb4_A Hypothetical leucine ri 97.1 8.7E-05 3E-09 64.4 0.9 82 112-217 225-308 (329)
147 2ifg_A High affinity nerve gro 96.6 0.0005 1.7E-08 59.9 1.4 79 2-84 32-114 (347)
148 3un9_A NLR family member X1; l 96.5 0.00021 7.3E-09 63.1 -1.6 102 2-103 127-249 (372)
149 4fdw_A Leucine rich hypothetic 96.5 0.0014 4.9E-08 58.4 3.5 33 26-58 157-190 (401)
150 1io0_A Tropomodulin; LRR prote 96.5 0.00024 8.1E-09 56.3 -1.5 102 2-103 37-161 (185)
151 3rw6_A Nuclear RNA export fact 96.5 0.00061 2.1E-08 57.1 0.7 58 25-84 169-231 (267)
152 1io0_A Tropomodulin; LRR prote 94.9 0.0065 2.2E-07 47.8 1.0 60 24-83 34-103 (185)
153 4fdw_A Leucine rich hypothetic 94.5 0.011 3.7E-07 52.7 1.5 171 17-216 170-380 (401)
154 3rw6_A Nuclear RNA export fact 94.1 0.011 3.9E-07 49.4 0.6 40 45-84 167-207 (267)
155 4gt6_A Cell surface protein; l 87.4 0.25 8.4E-06 43.5 2.3 15 144-158 353-367 (394)
156 3rfe_A Platelet glycoprotein I 86.5 0.62 2.1E-05 34.0 3.7 43 17-61 24-68 (130)
157 1pgv_A TMD-1, tropomodulin TMD 77.8 0.51 1.7E-05 37.3 0.3 78 24-102 39-135 (197)
158 1pgv_A TMD-1, tropomodulin TMD 77.3 0.58 2E-05 37.0 0.5 57 46-103 39-108 (197)
159 4fs7_A Uncharacterized protein 76.5 1.2 4E-05 39.1 2.3 95 22-121 272-374 (394)
160 4gt6_A Cell surface protein; l 70.6 1.4 4.6E-05 38.7 1.2 96 22-121 284-386 (394)
161 4fs7_A Uncharacterized protein 69.0 3.8 0.00013 35.7 3.8 121 22-158 249-376 (394)
162 4h09_A Hypothetical leucine ri 65.0 2.2 7.6E-05 36.9 1.4 119 22-156 213-341 (379)
163 4h09_A Hypothetical leucine ri 61.8 4.5 0.00015 34.9 2.8 56 22-81 259-318 (379)
164 2lz0_A Uncharacterized protein 27.3 51 0.0017 22.3 3.1 11 24-34 18-28 (100)
165 1s3a_A NADH-ubiquinone oxidore 23.3 60 0.0021 22.1 2.8 40 271-310 18-60 (102)
166 4a5z_A MITD1, MIT domain-conta 21.7 56 0.0019 24.5 2.5 40 243-282 34-78 (163)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.41 E-value=5.5e-14 Score=123.18 Aligned_cols=190 Identities=21% Similarity=0.138 Sum_probs=126.9
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeC-CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSL 80 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l 80 (311)
+|++|+|.-... ..+|..++.+++|++|+|++|.+. .|..+..+++|++|+|+++.+. .++..+..+++|+.|++
T Consensus 82 ~l~~L~L~~n~l--~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 82 GRVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSI 157 (328)
T ss_dssp TCCEEEEESSCC--SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEE
T ss_pred ceeEEEccCCCc--hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEEC
Confidence 678888877654 489999999999999999999876 5666889999999999999887 34555788999999999
Q ss_pred cccccee-----EE--------EeCCCceEEEeece-eeee--eecCCCCcceeEEEEEEccccchhhcccccchHHHHh
Q 042404 81 SYFDSLD-----LN--------ICAPELKYLYLEGE-FKDI--HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKIL 144 (311)
Q Consensus 81 ~~c~~~~-----~~--------i~~~~L~~L~i~~~-~~~~--~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l 144 (311)
.+|...+ +. -..++|++|.+.++ +..+ .+..+++|++++++.+...+. ...+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l------------~~~l 225 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSAL------------GPAI 225 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCC------------CGGG
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcC------------chhh
Confidence 9987543 11 13677777777775 2222 245677777777776554321 1224
Q ss_pred cCCCcceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEecc
Q 042404 145 GGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSS 217 (311)
Q Consensus 145 ~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~ 217 (311)
+.+++|+.|++..+.+. +..|..+. .+++|++|.+....... .++..+.++++|+.|++..+.
T Consensus 226 ~~l~~L~~L~Ls~n~~~----~~~p~~~~-~l~~L~~L~L~~n~~~~-----~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTAL----RNYPPIFG-GRAPLKRLILKDCSNLL-----TLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp GGCTTCCEEECTTCTTC----CBCCCCTT-CCCCCCEEECTTCTTCC-----BCCTTGGGCTTCCEEECTTCT
T ss_pred ccCCCCCEEECcCCcch----hhhHHHhc-CCCCCCEEECCCCCchh-----hcchhhhcCCCCCEEeCCCCC
Confidence 66777777777764321 11222222 46677777762211111 233446677777777777654
No 2
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.30 E-value=4.2e-12 Score=112.22 Aligned_cols=120 Identities=18% Similarity=0.151 Sum_probs=65.9
Q ss_pred CceEEEEEeCCCeeeecCC-CcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccc
Q 042404 2 DIRELVLELGEGEWFRVPS-CLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESL 78 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 78 (311)
++++|++..... ..+|. .+..+++|++|+|++|.+. .+..+.++++|++|+++++.++.- ....+.++++|++|
T Consensus 53 ~L~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 129 (353)
T 2z80_A 53 AVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTFL 129 (353)
T ss_dssp TCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSEE
T ss_pred cCcEEECCCCcC--cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCEE
Confidence 455555544332 24444 5566677777777776654 234466677777777777766542 22335567777777
Q ss_pred ccccccceeE-----EEeCCCceEEEeece--eeee---eecCCCCcceeEEEEEE
Q 042404 79 SLSYFDSLDL-----NICAPELKYLYLEGE--FKDI---HLESTPLLVSMSIAMYM 124 (311)
Q Consensus 79 ~l~~c~~~~~-----~i~~~~L~~L~i~~~--~~~~---~i~~~p~L~~l~l~~~~ 124 (311)
++.++....+ .-..++|++|.+.++ ...+ .+..+++|++++++.+.
T Consensus 130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 7766643221 112356666666654 2222 23455666666665543
No 3
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.21 E-value=5.9e-12 Score=110.83 Aligned_cols=116 Identities=15% Similarity=0.069 Sum_probs=62.3
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLS 81 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 81 (311)
++++|++..+.. ..+|. +..+++|++|+|++|.+...+.+..+++|++|+++++.+.+- + .+..+++|++|++.
T Consensus 45 ~L~~L~l~~~~i--~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~--~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 45 SITKLVVAGEKV--ASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--S-ALQNLTNLRELYLN 118 (347)
T ss_dssp TCSEEECCSSCC--CCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G-GGTTCTTCSEEECT
T ss_pred cccEEEEeCCcc--ccchh-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc--h-HHcCCCcCCEEECc
Confidence 456666544432 23443 666777777777777665333366677777777777765542 1 25567777777776
Q ss_pred ccccee--EEEeCCCceEEEeecee--ee-eeecCCCCcceeEEEEE
Q 042404 82 YFDSLD--LNICAPELKYLYLEGEF--KD-IHLESTPLLVSMSIAMY 123 (311)
Q Consensus 82 ~c~~~~--~~i~~~~L~~L~i~~~~--~~-~~i~~~p~L~~l~l~~~ 123 (311)
+|.... .....++|+.|.+.++. .. ..+..+++|+.++++.+
T Consensus 119 ~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~ 165 (347)
T 4fmz_A 119 EDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES 165 (347)
T ss_dssp TSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS
T ss_pred CCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC
Confidence 665322 11123455666655541 11 11334555555555443
No 4
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.18 E-value=4e-12 Score=116.18 Aligned_cols=58 Identities=17% Similarity=0.086 Sum_probs=25.9
Q ss_pred CCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccc
Q 042404 26 RKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFD 84 (311)
Q Consensus 26 ~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~ 84 (311)
++|++|+|++|.+. .+..+.++++|+.|+|+++.+..- ....+.++++|+.|+|.++.
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCc
Confidence 34555555554443 233344555555555555444321 11123345555555555443
No 5
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.16 E-value=7.9e-12 Score=117.84 Aligned_cols=100 Identities=22% Similarity=0.275 Sum_probs=55.8
Q ss_pred ceEEEEEeCCC-eeeecCCCcccCCCCcEEEccceeeCCCC------CCCCCCcccEEEeeeeeeC---hHHHHHHHhcC
Q 042404 3 IRELVLELGEG-EWFRVPSCLFNCRKLTRLELFRCEFDPPL------TFTGFPCLRSLNLHQVLVA---PEAIESLISSC 72 (311)
Q Consensus 3 v~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~l~~~~------~~~~l~~L~~L~L~~~~~~---~~~l~~ll~~c 72 (311)
+++|+|..+.. ....++..+..|++|++|+|++|.+.... ...++++|++|+++++.++ ...+..++.+|
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 55555544321 11122232335677777777777654321 1235677777777776654 45567777777
Q ss_pred cccccccccccccee---EEEeCCCceEEEeec
Q 042404 73 PLLESLSLSYFDSLD---LNICAPELKYLYLEG 102 (311)
Q Consensus 73 p~Le~L~l~~c~~~~---~~i~~~~L~~L~i~~ 102 (311)
|+|++|++.+|...+ .....++|+.|.+.+
T Consensus 220 ~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECB
T ss_pred CCCcEEeccCccHHHHHHHHhhhhHHHhhcccc
Confidence 777777777765322 222335666666654
No 6
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.16 E-value=9.8e-12 Score=106.46 Aligned_cols=214 Identities=16% Similarity=0.107 Sum_probs=127.6
Q ss_pred eecCCCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccccee-E----
Q 042404 16 FRVPSCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLD-L---- 88 (311)
Q Consensus 16 ~~lp~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~-~---- 88 (311)
..+|..+ .++|++|+|+++.+. .+..+..+++|++|+++++.+..- ....+.++++|++|++.++..+. +
T Consensus 24 ~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~l~~~~~~~ 100 (285)
T 1ozn_A 24 QAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDPAT 100 (285)
T ss_dssp SSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCTTT
T ss_pred ccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCCCccccCHHH
Confidence 4566544 358888888888775 334577888888888888876542 12235678888888888876332 2
Q ss_pred EEeCCCceEEEeece-eeee---eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEEee
Q 042404 89 NICAPELKYLYLEGE-FKDI---HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYLS 164 (311)
Q Consensus 89 ~i~~~~L~~L~i~~~-~~~~---~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~ 164 (311)
....++|++|.+.++ ...+ .+..+++|++++++.+...... ...++.+++|+.|++..+.+..+.
T Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP-----------DDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----------TTTTTTCTTCCEEECCSSCCCEEC
T ss_pred hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC-----------HhHhccCCCccEEECCCCcccccC
Confidence 113468888888875 2222 2456788888888765543211 223567788888888877554332
Q ss_pred cCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccCCcccccCCCchhhcccccCcccccce
Q 042404 165 IGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSNTLAAIEAPDLDFWEKECHADCSFKQL 244 (311)
Q Consensus 165 ~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 244 (311)
. .....+++|++|.+....+.. ..+..+..+++|+.|++..+.... .....+ ..+++|
T Consensus 170 ~-----~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~-------~~l~~L 227 (285)
T 1ozn_A 170 E-----RAFRGLHSLDRLLLHQNRVAH-----VHPHAFRDLGRLMTLYLFANNLSA-----LPTEAL-------APLRAL 227 (285)
T ss_dssp T-----TTTTTCTTCCEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCSC-----CCHHHH-------TTCTTC
T ss_pred H-----HHhcCccccCEEECCCCcccc-----cCHhHccCcccccEeeCCCCcCCc-----CCHHHc-------ccCccc
Confidence 1 112246778887773221111 113446677888888887664332 111111 124677
Q ss_pred eEEEEEe--ecCCcchHHHHHHH
Q 042404 245 KLVKMTD--ISGVPHEMELIKFL 265 (311)
Q Consensus 245 k~v~i~~--~~g~~~~~~l~~~l 265 (311)
+.+.+.+ +.+......+.+++
T Consensus 228 ~~L~l~~N~~~c~~~~~~~~~~l 250 (285)
T 1ozn_A 228 QYLRLNDNPWVCDCRARPLWAWL 250 (285)
T ss_dssp CEEECCSSCEECSGGGHHHHHHH
T ss_pred CEEeccCCCccCCCCcHHHHHHH
Confidence 7777775 44455544555554
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.15 E-value=1.1e-11 Score=113.94 Aligned_cols=240 Identities=14% Similarity=0.050 Sum_probs=141.0
Q ss_pred CceEEEEEeCCCeeeec-CCCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccc
Q 042404 2 DIRELVLELGEGEWFRV-PSCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESL 78 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 78 (311)
++++|+|..... ..+ |..+..+++|++|+|++|.+. .|..+.++++|++|+|+++.+..- ....+.++++|++|
T Consensus 33 ~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 109 (477)
T 2id5_A 33 ETRLLDLGKNRI--KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKL 109 (477)
T ss_dssp TCSEEECCSSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEE
T ss_pred CCcEEECCCCcc--ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEE
Confidence 466777655543 234 456778889999999988775 356678888999999988876542 12235678899999
Q ss_pred ccccccceeE----EEeCCCceEEEeece-eeee---eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcc
Q 042404 79 SLSYFDSLDL----NICAPELKYLYLEGE-FKDI---HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHL 150 (311)
Q Consensus 79 ~l~~c~~~~~----~i~~~~L~~L~i~~~-~~~~---~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l 150 (311)
++.++....+ ....++|+.|.+.++ ...+ .+..+++|+.++++.+...+.. ...+..+++|
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------~~~l~~l~~L 178 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-----------TEALSHLHGL 178 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-----------HHHHTTCTTC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-----------hhHhcccCCC
Confidence 9988764321 123468888888875 2222 3557888888888776543211 3335667777
Q ss_pred eEEEEeeeEEEEeecCCCCCCCCcccc------------------------ccceEEEeeeecCCHHHHHHHHHHHhcCC
Q 042404 151 EKLVGYIYFTKYLSIGDDPGRLPITYN------------------------HLKVIELYQVSFEDMKEILVVIRLITNSP 206 (311)
Q Consensus 151 ~~L~l~~~~~~~l~~~~~~~~~~~~f~------------------------~L~~L~l~~~~~~~~~~~~~l~~~l~~~p 206 (311)
+.|++..+.+..+.... ...++ +|++|.+....+.. .-...+..++
T Consensus 179 ~~L~l~~n~i~~~~~~~-----~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~l~ 248 (477)
T 2id5_A 179 IVLRLRHLNINAIRDYS-----FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-----VPYLAVRHLV 248 (477)
T ss_dssp CEEEEESCCCCEECTTC-----SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS-----CCHHHHTTCT
T ss_pred cEEeCCCCcCcEeChhh-----cccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc-----cCHHHhcCcc
Confidence 77777766544332111 01233 45555552211111 1123467778
Q ss_pred CcceEEEEeccCCcccccCCCchhhcccccCcccccceeEEEEEeecCCcchHHHHHHHHccCcccceEEEEecc
Q 042404 207 NLKELHISGSSNTLAAIEAPDLDFWEKECHADCSFKQLKLVKMTDISGVPHEMELIKFLLSNSPVLEIMSITPCT 281 (311)
Q Consensus 207 ~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~v~i~~~~g~~~~~~l~~~ll~~a~~Le~l~i~~~~ 281 (311)
+|+.|++..+..... ... .-..+.+|+.+.+.+-.-.. +...-+.+.+.|+.+.+....
T Consensus 249 ~L~~L~Ls~n~l~~~-----~~~-------~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 249 YLRFLNLSYNPISTI-----EGS-------MLHELLRLQEIQLVGGQLAV----VEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp TCCEEECCSSCCCEE-----CTT-------SCTTCTTCCEEECCSSCCSE----ECTTTBTTCTTCCEEECCSSC
T ss_pred ccCeeECCCCcCCcc-----Chh-------hccccccCCEEECCCCccce----ECHHHhcCcccCCEEECCCCc
Confidence 888888775543211 000 01135778887766422111 111234678899999887543
No 8
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.15 E-value=5.7e-12 Score=114.73 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=54.0
Q ss_pred eecCCCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccccee----EE
Q 042404 16 FRVPSCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLD----LN 89 (311)
Q Consensus 16 ~~lp~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~----~~ 89 (311)
..+|..+. ++++.|+|++|.+. .+..+.++++|+.|+|+++.+..-. ...+.++++|++|+|.++.... ..
T Consensus 56 ~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 132 (440)
T 3zyj_A 56 REVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNRLTTIPNGAF 132 (440)
T ss_dssp SSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEEC-GGGGTTCSSCCEEECCSSCCSSCCTTTS
T ss_pred CcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccC-hhhccCCccCCEEECCCCcCCeeCHhHh
Confidence 34555443 46666666666654 2344566666666666666554321 1224556666666666654221 11
Q ss_pred EeCCCceEEEeece-eeee---eecCCCCcceeEEEE
Q 042404 90 ICAPELKYLYLEGE-FKDI---HLESTPLLVSMSIAM 122 (311)
Q Consensus 90 i~~~~L~~L~i~~~-~~~~---~i~~~p~L~~l~l~~ 122 (311)
...++|++|.+.++ ...+ .+..+++|+.++++.
T Consensus 133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCC
Confidence 22355666666654 2221 233556666665544
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.14 E-value=2.3e-12 Score=112.88 Aligned_cols=192 Identities=17% Similarity=0.181 Sum_probs=136.0
Q ss_pred CCceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeC-CCCCCCCCCcccEEEeeeeeeChHHHHHH---------Hh
Q 042404 1 NDIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVLVAPEAIESL---------IS 70 (311)
Q Consensus 1 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~l---------l~ 70 (311)
+++++|+|..+.. ..+|..+..+++|++|+|++|.+. .|..+.++++|+.|++++|.+.+. ++.- +.
T Consensus 104 ~~L~~L~L~~n~l--~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~-~p~~~~~~~~~~~~~ 180 (328)
T 4fcg_A 104 SHLQHMTIDAAGL--MELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTE-LPEPLASTDASGEHQ 180 (328)
T ss_dssp TTCSEEEEESSCC--CCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCC-CCSCSEEEC-CCCEE
T ss_pred CCCCEEECCCCCc--cchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccc-cChhHhhccchhhhc
Confidence 3688999987765 389999999999999999999886 566688999999999999865432 1111 33
Q ss_pred cCccccccccccccceeE---EEeCCCceEEEeece-eeee--eecCCCCcceeEEEEEEccccchhhcccccchHHHHh
Q 042404 71 SCPLLESLSLSYFDSLDL---NICAPELKYLYLEGE-FKDI--HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKIL 144 (311)
Q Consensus 71 ~cp~Le~L~l~~c~~~~~---~i~~~~L~~L~i~~~-~~~~--~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l 144 (311)
++++|+.|++.+|....+ ....++|++|.+.++ +..+ .+..+++|+.++++.+...+ .+...+
T Consensus 181 ~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~-----------~~p~~~ 249 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR-----------NYPPIF 249 (328)
T ss_dssp ESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCC-----------BCCCCT
T ss_pred cCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchh-----------hhHHHh
Confidence 599999999999863221 123468999999986 3322 35688999999998765432 123346
Q ss_pred cCCCcceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEec
Q 042404 145 GGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGS 216 (311)
Q Consensus 145 ~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~ 216 (311)
+.+++|+.|++..+... +..|..+. .+++|++|.+.. +... ..++..+.++++|+.+.+...
T Consensus 250 ~~l~~L~~L~L~~n~~~----~~~p~~~~-~l~~L~~L~L~~---n~~~--~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 250 GGRAPLKRLILKDCSNL----LTLPLDIH-RLTQLEKLDLRG---CVNL--SRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TCCCCCCEEECTTCTTC----CBCCTTGG-GCTTCCEEECTT---CTTC--CCCCGGGGGSCTTCEEECCGG
T ss_pred cCCCCCCEEECCCCCch----hhcchhhh-cCCCCCEEeCCC---CCch--hhccHHHhhccCceEEeCCHH
Confidence 78899999999875321 22343333 578899888832 2211 155677889999999988643
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.13 E-value=8.6e-12 Score=121.35 Aligned_cols=147 Identities=17% Similarity=0.143 Sum_probs=89.9
Q ss_pred CceEEEEEeCCCeeeecCC--CcccCCCCcEEEccceeeC--CCCCC-CCCCcccEEEeeeeeeChHHHH--HHHhcCcc
Q 042404 2 DIRELVLELGEGEWFRVPS--CLFNCRKLTRLELFRCEFD--PPLTF-TGFPCLRSLNLHQVLVAPEAIE--SLISSCPL 74 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~l~--~~~~~-~~l~~L~~L~L~~~~~~~~~l~--~ll~~cp~ 74 (311)
++++|+|..+.. .-.+|. .+.++++|++|+|++|.+. .|..+ ..+++|++|+|+++.+.+.... ..+.+|++
T Consensus 101 ~L~~L~Ls~n~l-~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~ 179 (768)
T 3rgz_A 101 SLTSLDLSRNSL-SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179 (768)
T ss_dssp TCCEEECCSSEE-EEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTT
T ss_pred CCCEEECCCCcC-CCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCC
Confidence 455555544322 123555 6777777777777777654 22222 5677788888877776543222 22667888
Q ss_pred cccccccccccee-EE-EeCCCceEEEeecee-ee-e-eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCc
Q 042404 75 LESLSLSYFDSLD-LN-ICAPELKYLYLEGEF-KD-I-HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPH 149 (311)
Q Consensus 75 Le~L~l~~c~~~~-~~-i~~~~L~~L~i~~~~-~~-~-~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 149 (311)
|++|++.+|...+ .. ...++|++|.+.++. .. + .+..+++|++++++.+...+ .+...++.+++
T Consensus 180 L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~-----------~~~~~l~~l~~ 248 (768)
T 3rgz_A 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG-----------DFSRAISTCTE 248 (768)
T ss_dssp CCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS-----------CHHHHTTTCSS
T ss_pred CCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC-----------cccHHHhcCCC
Confidence 8888888776433 11 234678888887752 11 1 25677888888887665432 23445677777
Q ss_pred ceEEEEeeeEE
Q 042404 150 LEKLVGYIYFT 160 (311)
Q Consensus 150 l~~L~l~~~~~ 160 (311)
|+.|++..+.+
T Consensus 249 L~~L~Ls~n~l 259 (768)
T 3rgz_A 249 LKLLNISSNQF 259 (768)
T ss_dssp CCEEECCSSCC
T ss_pred CCEEECCCCcc
Confidence 88887776644
No 11
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.13 E-value=1.5e-11 Score=115.92 Aligned_cols=100 Identities=17% Similarity=0.182 Sum_probs=68.8
Q ss_pred cCCCCcEEEccceeeCC--CCCCC-CCCcccEEEeeee-eeChHHHHHHHhcCcccccccccccccee--------EEEe
Q 042404 24 NCRKLTRLELFRCEFDP--PLTFT-GFPCLRSLNLHQV-LVAPEAIESLISSCPLLESLSLSYFDSLD--------LNIC 91 (311)
Q Consensus 24 ~~~~L~~L~L~~~~l~~--~~~~~-~l~~L~~L~L~~~-~~~~~~l~~ll~~cp~Le~L~l~~c~~~~--------~~i~ 91 (311)
.+++|++|+|++|.+.. +..+. ++++|++|+|.+| .+++..+..+..+||+|++|++.+|...+ +...
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 57899999999887652 22232 5889999999988 57777788888889999999999886211 2224
Q ss_pred CCCceEEEeeceeeee-------eecCCCCcceeEEEEE
Q 042404 92 APELKYLYLEGEFKDI-------HLESTPLLVSMSIAMY 123 (311)
Q Consensus 92 ~~~L~~L~i~~~~~~~-------~i~~~p~L~~l~l~~~ 123 (311)
.++|+.|++.++...+ .+..+|+|+++++..+
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 5688888887653111 0124677777777654
No 12
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.13 E-value=1.2e-11 Score=113.01 Aligned_cols=121 Identities=19% Similarity=0.110 Sum_probs=72.1
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLS 79 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 79 (311)
++++|+|.-.... ...|..+..+++|++|+|++|.+. .+..+.++++|++|+|+++.+..- ....+..+++|++|+
T Consensus 76 ~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 76 NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLRELW 153 (452)
T ss_dssp TCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCEEE
T ss_pred CccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccCCCCEEE
Confidence 5677776555431 223556677788888888877765 345567778888888887776542 122355677788887
Q ss_pred cccccceeE----EEeCCCceEEEeece--eeee---eecCCCCcceeEEEEEE
Q 042404 80 LSYFDSLDL----NICAPELKYLYLEGE--FKDI---HLESTPLLVSMSIAMYM 124 (311)
Q Consensus 80 l~~c~~~~~----~i~~~~L~~L~i~~~--~~~~---~i~~~p~L~~l~l~~~~ 124 (311)
+.++....+ ....++|+.|.+.++ ...+ .+..+++|+.++++.+.
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence 777653221 112356777776653 1222 23456666666665544
No 13
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.11 E-value=1e-11 Score=107.98 Aligned_cols=193 Identities=18% Similarity=0.096 Sum_probs=125.9
Q ss_pred CceEEEEEeCCCe-eeecCCCcccCCCCcEEEccc-eeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccc
Q 042404 2 DIRELVLELGEGE-WFRVPSCLFNCRKLTRLELFR-CEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLES 77 (311)
Q Consensus 2 ~v~~L~l~~~~~~-~~~lp~~~~~~~~L~~L~L~~-~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 77 (311)
+|++|+|...... ...+|..+..+++|++|+|++ +.+. .|..+..+++|++|+|+++.+.+. ++..+..+++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCE
Confidence 5788888766532 237899999999999999995 6553 566788999999999999987643 3344778999999
Q ss_pred ccccccccee----EEEeCCCceEEEeecee-e-ee--eecCCC-CcceeEEEEEEccccchhhcccccchHHHHhcCCC
Q 042404 78 LSLSYFDSLD----LNICAPELKYLYLEGEF-K-DI--HLESTP-LLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVP 148 (311)
Q Consensus 78 L~l~~c~~~~----~~i~~~~L~~L~i~~~~-~-~~--~i~~~p-~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 148 (311)
|++.++...+ .....++|++|.+.++. . .+ .+..++ +|+.++++.+...+. ....+..++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~-----------~~~~~~~l~ 198 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK-----------IPPTFANLN 198 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE-----------CCGGGGGCC
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc-----------CChHHhCCc
Confidence 9999886432 11235789999998862 2 22 344566 899998876654311 122234444
Q ss_pred cceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccC
Q 042404 149 HLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSN 218 (311)
Q Consensus 149 ~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~ 218 (311)
|+.|++..+.+... .+..+ ..+++|+.|.+....+... ...+..+++|++|++..+..
T Consensus 199 -L~~L~Ls~N~l~~~----~~~~~-~~l~~L~~L~L~~N~l~~~------~~~~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 199 -LAFVDLSRNMLEGD----ASVLF-GSDKNTQKIHLAKNSLAFD------LGKVGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp -CSEEECCSSEEEEC----CGGGC-CTTSCCSEEECCSSEECCB------GGGCCCCTTCCEEECCSSCC
T ss_pred -ccEEECcCCcccCc----CCHHH-hcCCCCCEEECCCCceeee------cCcccccCCCCEEECcCCcc
Confidence 88888877765532 11112 2466777777733222211 11255677888888876543
No 14
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.11 E-value=2.7e-10 Score=100.53 Aligned_cols=181 Identities=19% Similarity=0.133 Sum_probs=125.7
Q ss_pred eecCCCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeE----E
Q 042404 16 FRVPSCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDL----N 89 (311)
Q Consensus 16 ~~lp~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~----~ 89 (311)
..+|..+. ++|++|+|+++.+. .+..+.++++|++|+++++.+.+- ....+.++++|++|++.++....+ .
T Consensus 44 ~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 120 (353)
T 2z80_A 44 NSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI-EEDSFSSLGSLEHLDLSYNYLSNLSSSWF 120 (353)
T ss_dssp SSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCSSCCHHHH
T ss_pred cccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc-CHhhcCCCCCCCEEECCCCcCCcCCHhHh
Confidence 46777655 48999999999886 333688999999999999987653 223367899999999999864331 2
Q ss_pred EeCCCceEEEeece-eeee----eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEEee
Q 042404 90 ICAPELKYLYLEGE-FKDI----HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYLS 164 (311)
Q Consensus 90 i~~~~L~~L~i~~~-~~~~----~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~ 164 (311)
-..++|++|.+.++ ...+ .+..+++|+.++++.+..... .....+..+++|+.|++..+.+..+.
T Consensus 121 ~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~----------~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK----------IQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE----------ECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred CCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc----------cCHHHccCCCCCCEEECCCCCcCccC
Confidence 23579999999986 2222 356899999999988732110 01233678899999999987654432
Q ss_pred cCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccCC
Q 042404 165 IGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSNT 219 (311)
Q Consensus 165 ~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~~ 219 (311)
+..+. .+++|++|.+....+. . .-..++..+++|+.|++..+...
T Consensus 191 ----~~~l~-~l~~L~~L~l~~n~l~---~--~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 191 ----PKSLK-SIQNVSHLILHMKQHI---L--LLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp ----TTTTT-TCSEEEEEEEECSCST---T--HHHHHHHHTTTEEEEEEESCBCT
T ss_pred ----HHHHh-ccccCCeecCCCCccc---c--chhhhhhhcccccEEECCCCccc
Confidence 22222 4788888888432222 1 22345677999999999977643
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.11 E-value=8.5e-11 Score=107.97 Aligned_cols=203 Identities=16% Similarity=0.065 Sum_probs=103.3
Q ss_pred CceEEEEEeCCCeeeecCCC-cccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccc
Q 042404 2 DIRELVLELGEGEWFRVPSC-LFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESL 78 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 78 (311)
++++|+|.-+.. ..+|.. +..+++|++|+|++|.+. .+..+..+++|+.|++.++.+... ....+.++++|++|
T Consensus 81 ~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L 157 (477)
T 2id5_A 81 NLRTLGLRSNRL--KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI-SHRAFSGLNSLEQL 157 (477)
T ss_dssp TCCEEECCSSCC--CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE-CTTSSTTCTTCCEE
T ss_pred cCCEEECCCCcC--CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcccee-ChhhccCCCCCCEE
Confidence 567777655432 355554 456777888888777664 344566677777777777655432 11124566677777
Q ss_pred ccccccceeE----EEeCCCceEEEeece-eee---eeecCCCCcceeEEEEEEccccc-hh------h-----ccc-cc
Q 042404 79 SLSYFDSLDL----NICAPELKYLYLEGE-FKD---IHLESTPLLVSMSIAMYMTDDIA-EH------F-----EQS-SS 137 (311)
Q Consensus 79 ~l~~c~~~~~----~i~~~~L~~L~i~~~-~~~---~~i~~~p~L~~l~l~~~~~~~~~-~~------~-----~~~-~~ 137 (311)
++.+|....+ ....++|+.|.+.++ ... ..+..+++|+.++++.+...+.. .. . ... ..
T Consensus 158 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 237 (477)
T 2id5_A 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237 (477)
T ss_dssp EEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC
T ss_pred ECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc
Confidence 7666642211 112345666665553 111 12334555555555443211100 00 0 000 00
Q ss_pred chHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEecc
Q 042404 138 CNFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSS 217 (311)
Q Consensus 138 ~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~ 217 (311)
......+..+++|+.|++..+.+..+... ....+++|++|.+....+.. ..+..+.++++|+.|++..+.
T Consensus 238 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGS-----MLHELLRLQEIQLVGGQLAV-----VEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp SCCHHHHTTCTTCCEEECCSSCCCEECTT-----SCTTCTTCCEEECCSSCCSE-----ECTTTBTTCTTCCEEECCSSC
T ss_pred ccCHHHhcCccccCeeECCCCcCCccChh-----hccccccCCEEECCCCccce-----ECHHHhcCcccCCEEECCCCc
Confidence 01123456778888888877765443221 11246677777773211111 112345677788888777654
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.10 E-value=4.3e-11 Score=107.12 Aligned_cols=189 Identities=16% Similarity=0.125 Sum_probs=101.6
Q ss_pred CceEEEEEeCCCeeeecC-CCcccCCCCcEEEccceeeC-CCCC-CCCCCcccEEEeeeeeeChHHHHHHHhcCcccccc
Q 042404 2 DIRELVLELGEGEWFRVP-SCLFNCRKLTRLELFRCEFD-PPLT-FTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESL 78 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~l~-~~~~-~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 78 (311)
++++|+|..+.. ..+| ..+..+++|++|+|++|.+. .|.. +.++++|++|+++++.+... ....+..+++|+.|
T Consensus 94 ~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 170 (390)
T 3o6n_A 94 TIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNL 170 (390)
T ss_dssp TCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTSSCTTCCEE
T ss_pred CcCEEECCCCCC--CcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc-ChhhccCCCCCCEE
Confidence 577777765543 3344 44677888888888888775 3333 46788888888888876542 22235678888888
Q ss_pred ccccccceeEE-EeCCC-------------------ceEEEeece-eeeeeecCCCCcceeEEEEEEccccchhhccccc
Q 042404 79 SLSYFDSLDLN-ICAPE-------------------LKYLYLEGE-FKDIHLESTPLLVSMSIAMYMTDDIAEHFEQSSS 137 (311)
Q Consensus 79 ~l~~c~~~~~~-i~~~~-------------------L~~L~i~~~-~~~~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~ 137 (311)
++.++....+. -..++ |+.|.+.++ ...+.....++|+.++++.+...+
T Consensus 171 ~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~---------- 240 (390)
T 3o6n_A 171 QLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD---------- 240 (390)
T ss_dssp ECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC----------
T ss_pred ECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc----------
Confidence 88876532110 01133 444444442 122222233455555554443221
Q ss_pred chHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEecc
Q 042404 138 CNFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSS 217 (311)
Q Consensus 138 ~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~ 217 (311)
...+..+++|+.|++..+.+..+.. ..+ ..+++|++|.+....+. .++.....+|+|+.|++..+.
T Consensus 241 ---~~~l~~l~~L~~L~Ls~n~l~~~~~----~~~-~~l~~L~~L~L~~n~l~------~~~~~~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 241 ---TAWLLNYPGLVEVDLSYNELEKIMY----HPF-VKMQRLERLYISNNRLV------ALNLYGQPIPTLKVLDLSHNH 306 (390)
T ss_dssp ---CGGGGGCTTCSEEECCSSCCCEEES----GGG-TTCSSCCEEECCSSCCC------EEECSSSCCTTCCEEECCSSC
T ss_pred ---cHHHcCCCCccEEECCCCcCCCcCh----hHc-cccccCCEEECCCCcCc------ccCcccCCCCCCCEEECCCCc
Confidence 1234566777777776665443211 111 13556666666221111 112223456677777666553
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.09 E-value=1.8e-09 Score=100.79 Aligned_cols=233 Identities=15% Similarity=0.055 Sum_probs=139.0
Q ss_pred eeecCCCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeE----
Q 042404 15 WFRVPSCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDL---- 88 (311)
Q Consensus 15 ~~~lp~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~---- 88 (311)
...+|..++ ++|++|+|++|.+. .|..+.++++|++|+|+++.+.+. .+..+.++++|++|++.+|...++
T Consensus 17 l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 93 (549)
T 2z81_A 17 FTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSDNHLSSLSSSW 93 (549)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCSCCHHH
T ss_pred cccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCcc-ChhhccccccCCEEECCCCccCccCHHH
Confidence 356777654 67888888888765 345677888888888888876643 223356788888888888764331
Q ss_pred EEeCCCceEEEeece-eee----eeecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEEe
Q 042404 89 NICAPELKYLYLEGE-FKD----IHLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYL 163 (311)
Q Consensus 89 ~i~~~~L~~L~i~~~-~~~----~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l 163 (311)
....++|++|.+.++ +.. ..+..+++|+.++++.+...+. .....+..+++|+.|++..+.+...
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~----------~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE----------IRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE----------ECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccc----------cCHhhhhcccccCeeeccCCccccc
Confidence 123467888888875 221 1356889999999988652210 0012357889999999987765432
Q ss_pred ecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccCCcccccCCCchhhcccccCcccccc
Q 042404 164 SIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSNTLAAIEAPDLDFWEKECHADCSFKQ 243 (311)
Q Consensus 164 ~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (311)
.+..+. .+++|++|.+....... .-..+++.+++|+.|++..+........ ..+ ......+
T Consensus 164 ----~~~~l~-~l~~L~~L~l~~n~~~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~-----~~~~~~~ 224 (549)
T 2z81_A 164 ----QSQSLK-SIRDIHHLTLHLSESAF-----LLEIFADILSSVRYLELRDTNLARFQFS----PLP-----VDEVSSP 224 (549)
T ss_dssp ----CTTTTT-TCSEEEEEEEECSBSTT-----HHHHHHHSTTTBSEEEEESCBCTTCCCC----CCS-----SCCCCCC
T ss_pred ----Chhhhh-ccccCceEecccCcccc-----cchhhHhhcccccEEEccCCcccccccc----ccc-----hhhhhhc
Confidence 222233 47788888883221111 1223467799999999997654321000 000 1112466
Q ss_pred eeEEEEEeecCCcchHHHHHHHHccCcccceEEEEe
Q 042404 244 LKLVKMTDISGVPHEMELIKFLLSNSPVLEIMSITP 279 (311)
Q Consensus 244 Lk~v~i~~~~g~~~~~~l~~~ll~~a~~Le~l~i~~ 279 (311)
|+.+.+.+-.-......-+...+.+.+.|+.+.+..
T Consensus 225 L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~ 260 (549)
T 2z81_A 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260 (549)
T ss_dssp CCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred ccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence 777776653322222222333345556666666553
No 18
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.09 E-value=2.1e-11 Score=105.94 Aligned_cols=98 Identities=16% Similarity=0.155 Sum_probs=48.9
Q ss_pred CCCcEEEccceeeC----CCCCCCCCCcccEEEeee-eeeChHHHHHHHhcCcccccccccccccee-E---EEeCCCce
Q 042404 26 RKLTRLELFRCEFD----PPLTFTGFPCLRSLNLHQ-VLVAPEAIESLISSCPLLESLSLSYFDSLD-L---NICAPELK 96 (311)
Q Consensus 26 ~~L~~L~L~~~~l~----~~~~~~~l~~L~~L~L~~-~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~-~---~i~~~~L~ 96 (311)
.++++|+|+++.+. .|..+.++++|++|++++ +.+.+. ++..+..+++|++|++.++...+ + ....++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 35666666665553 244455666666666663 433322 22224556666666666554322 1 11234566
Q ss_pred EEEeecee-e-ee--eecCCCCcceeEEEEEE
Q 042404 97 YLYLEGEF-K-DI--HLESTPLLVSMSIAMYM 124 (311)
Q Consensus 97 ~L~i~~~~-~-~~--~i~~~p~L~~l~l~~~~ 124 (311)
+|.+.++. . .+ .+..+++|++++++.+.
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCc
Confidence 66666541 1 11 23455666666655443
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.08 E-value=4.5e-11 Score=109.61 Aligned_cols=114 Identities=15% Similarity=0.093 Sum_probs=74.5
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLS 81 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 81 (311)
++++|++.-+.. ..+|. +..+++|++|+|++|.+...+.+.++++|+.|+++++.+.+... +..+++|++|++.
T Consensus 47 ~l~~L~l~~~~i--~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 47 QVTTLQADRLGI--KSIDG-VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLF 120 (466)
T ss_dssp TCCEEECCSSCC--CCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECC
T ss_pred cccEEecCCCCC--ccCcc-hhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh---hcCCCCCCEEECC
Confidence 456666544432 34553 67788888888888877643337788888888888887765321 6788888888888
Q ss_pred ccccee--EEEeCCCceEEEeecee-eee-eecCCCCcceeEEE
Q 042404 82 YFDSLD--LNICAPELKYLYLEGEF-KDI-HLESTPLLVSMSIA 121 (311)
Q Consensus 82 ~c~~~~--~~i~~~~L~~L~i~~~~-~~~-~i~~~p~L~~l~l~ 121 (311)
+|.... .....++|++|.+.++. ..+ .+..+++|+.+.+.
T Consensus 121 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 121 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG 164 (466)
T ss_dssp SSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE
T ss_pred CCCCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecC
Confidence 875333 11234678888887752 222 24567777777764
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.08 E-value=2.5e-11 Score=106.83 Aligned_cols=228 Identities=18% Similarity=0.162 Sum_probs=142.2
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEcccee-eCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCE-FDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSL 80 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~-l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l 80 (311)
++++|++..+.. ..+|. +..+++|++|++++|. ...++.+..+++|+.|++.++.+.+... +..+++|++|++
T Consensus 111 ~L~~L~l~~n~i--~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l 184 (347)
T 4fmz_A 111 NLRELYLNEDNI--SDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSL 184 (347)
T ss_dssp TCSEEECTTSCC--CCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEEC
T ss_pred cCCEEECcCCcc--cCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh---hccCCCCCEEEc
Confidence 577888765543 34444 7789999999999984 4455557889999999999988765322 678999999999
Q ss_pred cccccee--EEEeCCCceEEEeece-eeee-eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEe
Q 042404 81 SYFDSLD--LNICAPELKYLYLEGE-FKDI-HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGY 156 (311)
Q Consensus 81 ~~c~~~~--~~i~~~~L~~L~i~~~-~~~~-~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~ 156 (311)
.+|.... .....++|+.+.+.++ ...+ .+..+++|++++++.+...+. .. +..+++|+.|++.
T Consensus 185 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~------------~~-~~~l~~L~~L~l~ 251 (347)
T 4fmz_A 185 NYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDL------------SP-LANLSQLTWLEIG 251 (347)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC------------GG-GTTCTTCCEEECC
T ss_pred cCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCC------------cc-hhcCCCCCEEECC
Confidence 9886433 1123468888888875 2222 256788888888877654321 11 5777888888887
Q ss_pred eeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccCCcccccCCCchhhccccc
Q 042404 157 IYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSNTLAAIEAPDLDFWEKECH 236 (311)
Q Consensus 157 ~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~ 236 (311)
.+.+..+ + .+ ..+++|++|.+....+.. + ..+..+|+|+.|++..+..... ....+
T Consensus 252 ~n~l~~~-----~-~~-~~l~~L~~L~l~~n~l~~------~-~~~~~l~~L~~L~L~~n~l~~~-----~~~~l----- 307 (347)
T 4fmz_A 252 TNQISDI-----N-AV-KDLTKLKMLNVGSNQISD------I-SVLNNLSQLNSLFLNNNQLGNE-----DMEVI----- 307 (347)
T ss_dssp SSCCCCC-----G-GG-TTCTTCCEEECCSSCCCC------C-GGGGGCTTCSEEECCSSCCCGG-----GHHHH-----
T ss_pred CCccCCC-----h-hH-hcCCCcCEEEccCCccCC------C-hhhcCCCCCCEEECcCCcCCCc-----ChhHh-----
Confidence 7654321 1 11 246777777773322222 1 2366788888888876643211 11111
Q ss_pred CcccccceeEEEEEeecCCcchHHHHHHHHccCcccceEEEEec
Q 042404 237 ADCSFKQLKLVKMTDISGVPHEMELIKFLLSNSPVLEIMSITPC 280 (311)
Q Consensus 237 ~~~~~~~Lk~v~i~~~~g~~~~~~l~~~ll~~a~~Le~l~i~~~ 280 (311)
..+++|+.+.+.+-.-.... . +.+.+.|+.+.+...
T Consensus 308 --~~l~~L~~L~L~~n~l~~~~-~-----~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 308 --GGLTNLTTLFLSQNHITDIR-P-----LASLSKMDSADFANQ 343 (347)
T ss_dssp --HTCTTCSEEECCSSSCCCCG-G-----GGGCTTCSEESSSCC
T ss_pred --hccccCCEEEccCCcccccc-C-----hhhhhccceeehhhh
Confidence 12467777776653211111 1 566777777666543
No 21
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.07 E-value=1.2e-11 Score=112.58 Aligned_cols=120 Identities=21% Similarity=0.147 Sum_probs=63.9
Q ss_pred CceEEEEEeCCCeeeec-CCCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccc
Q 042404 2 DIRELVLELGEGEWFRV-PSCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESL 78 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 78 (311)
+++.|+|..+.. ..+ |..+..+++|++|+|++|.+. .+..+.++++|++|+|+++.+..- ....+..+++|++|
T Consensus 65 ~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 65 NTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKEL 141 (440)
T ss_dssp TCSEEECCSCCC--CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCEE
T ss_pred CCcEEEccCCcC--CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhccccCcee
Confidence 456666654433 223 345666777777777777654 233456677777777777665532 11234566777777
Q ss_pred ccccccceeE----EEeCCCceEEEeece--eeee---eecCCCCcceeEEEEEE
Q 042404 79 SLSYFDSLDL----NICAPELKYLYLEGE--FKDI---HLESTPLLVSMSIAMYM 124 (311)
Q Consensus 79 ~l~~c~~~~~----~i~~~~L~~L~i~~~--~~~~---~i~~~p~L~~l~l~~~~ 124 (311)
++.++....+ ....++|+.|.+.++ ...+ .+..+++|+.++++.+.
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 196 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence 7766543221 112355666666552 1111 23345556665554443
No 22
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.07 E-value=4.1e-11 Score=102.58 Aligned_cols=195 Identities=17% Similarity=0.218 Sum_probs=127.7
Q ss_pred CceEEEEEeCCCeeeecC-CCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeee-eChHHHHHHHhcCccccc
Q 042404 2 DIRELVLELGEGEWFRVP-SCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVL-VAPEAIESLISSCPLLES 77 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~ 77 (311)
++++|+|.-... ..+| ..+..+++|++|+|+++.+. .+..+.++++|++|+++++. +..- ....+..+++|++
T Consensus 33 ~l~~L~l~~n~i--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 33 ASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLHT 109 (285)
T ss_dssp TCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCCE
T ss_pred CceEEEeeCCcC--CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCCCE
Confidence 466666654433 3455 45777889999999988775 35567788999999999885 5432 1233667899999
Q ss_pred cccccccceeE----EEeCCCceEEEeece-eeee---eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCc
Q 042404 78 LSLSYFDSLDL----NICAPELKYLYLEGE-FKDI---HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPH 149 (311)
Q Consensus 78 L~l~~c~~~~~----~i~~~~L~~L~i~~~-~~~~---~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 149 (311)
|++.+|....+ ....++|++|.+.++ ...+ .+..+++|+.++++.+...+.. ...+..+++
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------~~~~~~l~~ 178 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-----------ERAFRGLHS 178 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-----------TTTTTTCTT
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC-----------HHHhcCccc
Confidence 99988864331 123468899988885 3322 2457888999888776443211 223567888
Q ss_pred ceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccCCc
Q 042404 150 LEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSNTL 220 (311)
Q Consensus 150 l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~~~ 220 (311)
|+.|++..+.+..+. +..+. .+++|++|.+....+.. .....+..+++|+.|++..++..+
T Consensus 179 L~~L~l~~n~l~~~~----~~~~~-~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 179 LDRLLLHQNRVAHVH----PHAFR-DLGRLMTLYLFANNLSA-----LPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCEEECCSSCCCEEC----TTTTT-TCTTCCEEECCSSCCSC-----CCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cCEEECCCCcccccC----HhHcc-CcccccEeeCCCCcCCc-----CCHHHcccCcccCEEeccCCCccC
Confidence 999999887655432 22222 46788888884322222 223557888999999998776543
No 23
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.07 E-value=4.7e-11 Score=103.48 Aligned_cols=184 Identities=17% Similarity=0.135 Sum_probs=126.6
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLS 81 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 81 (311)
++++|++..+.. ..+| .+..+++|++|+|++|.+...+.+..+++|+.|+++++.+.+- . -+..+++|++|++.
T Consensus 42 ~L~~L~l~~~~i--~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGV--TTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCc--cCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEECC
Confidence 466777654432 3455 5778899999999999886433377899999999999987653 2 26789999999999
Q ss_pred cccceeE--EEeCCCceEEEeece-eeee-eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEee
Q 042404 82 YFDSLDL--NICAPELKYLYLEGE-FKDI-HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYI 157 (311)
Q Consensus 82 ~c~~~~~--~i~~~~L~~L~i~~~-~~~~-~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~ 157 (311)
+|....+ ....++|+.|.+.++ ...+ .+..+++|+.++++.+...+ +.. +..+++|+.|++..
T Consensus 116 ~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~------------~~~-l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 116 STQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD------------LTP-LANLSKLTTLKADD 182 (308)
T ss_dssp TSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC------------CGG-GTTCTTCCEEECCS
T ss_pred CCCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCC------------Chh-hcCCCCCCEEECCC
Confidence 8864331 123468899998885 2222 25678889999887765432 122 67889999999988
Q ss_pred eEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccC
Q 042404 158 YFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSN 218 (311)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~ 218 (311)
+.+..+. . ...+++|++|.+....+... . -+..+|+|+.|++..+..
T Consensus 183 n~l~~~~-----~--l~~l~~L~~L~L~~N~l~~~------~-~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 183 NKISDIS-----P--LASLPNLIEVHLKNNQISDV------S-PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp SCCCCCG-----G--GGGCTTCCEEECTTSCCCBC------G-GGTTCTTCCEEEEEEEEE
T ss_pred CccCcCh-----h--hcCCCCCCEEEccCCccCcc------c-cccCCCCCCEEEccCCee
Confidence 7654321 1 23578888888843222221 1 268899999999987764
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.07 E-value=3.9e-11 Score=109.45 Aligned_cols=100 Identities=19% Similarity=0.159 Sum_probs=60.9
Q ss_pred CceEEEEEeCCCeeeec-CCCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHH-HHHhcCccccc
Q 042404 2 DIRELVLELGEGEWFRV-PSCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIE-SLISSCPLLES 77 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~-~ll~~cp~Le~ 77 (311)
++++|+|.-+... ..+ |..+..+++|++|+|++|.+. .|..+.++++|++|+|+++.+.+..+. ..+..+++|++
T Consensus 55 ~L~~L~L~~n~~~-~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~ 133 (455)
T 3v47_A 55 DLQFLKVEQQTPG-LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133 (455)
T ss_dssp TCCEEECCCCSTT-CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCE
T ss_pred cccEEECcCCccc-ceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCE
Confidence 5677776555331 234 345667788888888877664 355677778888888888777653222 22556777777
Q ss_pred cccccccceeE-----EEeCCCceEEEeec
Q 042404 78 LSLSYFDSLDL-----NICAPELKYLYLEG 102 (311)
Q Consensus 78 L~l~~c~~~~~-----~i~~~~L~~L~i~~ 102 (311)
|++.+|....+ ....++|++|.+.+
T Consensus 134 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp EECCSSBCCSCCCCGGGGGCTTCCEEECTT
T ss_pred EECCCCccCccCcccccCCCCcccEEeCCC
Confidence 77777653221 11235566666554
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.07 E-value=3.9e-11 Score=109.45 Aligned_cols=121 Identities=17% Similarity=0.092 Sum_probs=81.1
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeC---CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFD---PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESL 78 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~---~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 78 (311)
++++|+|...... ...|..+..+++|++|+|++|.+. .+..+.++++|++|+|+++.+... ....+.++++|++|
T Consensus 31 ~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 108 (455)
T 3v47_A 31 HVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL-ETGAFNGLANLEVL 108 (455)
T ss_dssp TCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE-CTTTTTTCTTCCEE
T ss_pred ccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc-ChhhccCcccCCEE
Confidence 5778887666442 234677888888999999888653 245577888899999988876543 22336678889999
Q ss_pred cccccccee--E----EEeCCCceEEEeece-eeee---e-ecCCCCcceeEEEEEE
Q 042404 79 SLSYFDSLD--L----NICAPELKYLYLEGE-FKDI---H-LESTPLLVSMSIAMYM 124 (311)
Q Consensus 79 ~l~~c~~~~--~----~i~~~~L~~L~i~~~-~~~~---~-i~~~p~L~~l~l~~~~ 124 (311)
++.+|...+ . ....++|++|.+.++ ...+ . +..+++|+.++++.+.
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 888886432 1 123468888888875 2221 1 4567777777775543
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.06 E-value=5.3e-11 Score=112.54 Aligned_cols=63 Identities=21% Similarity=0.286 Sum_probs=30.5
Q ss_pred CcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccc
Q 042404 21 CLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFD 84 (311)
Q Consensus 21 ~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~ 84 (311)
.+..+++|++|+|++|.+. +|..+.++++|+.|+|+++.+..- ...++.++++|+.|++.+|.
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~Ls~N~ 158 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNN 158 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC-CHHHhccCCCCCEEEeeCCc
Confidence 4455555555555555543 222344555555555555554421 11223445555555555543
No 27
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.05 E-value=9.9e-11 Score=110.31 Aligned_cols=83 Identities=30% Similarity=0.399 Sum_probs=58.1
Q ss_pred CceEEEEEeCCC-eeeecCCCcccCCCCcEEEccceeeCCC------CCCCCCCcccEEEeeeee--eChHHHHHHHhcC
Q 042404 2 DIRELVLELGEG-EWFRVPSCLFNCRKLTRLELFRCEFDPP------LTFTGFPCLRSLNLHQVL--VAPEAIESLISSC 72 (311)
Q Consensus 2 ~v~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~l~~~------~~~~~l~~L~~L~L~~~~--~~~~~l~~ll~~c 72 (311)
++++|+|..+.. ....++..+.+|++|++|+|++|.+... .....+++|++|+++++. +++..+..++.+|
T Consensus 131 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~ 210 (594)
T 2p1m_B 131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC 210 (594)
T ss_dssp TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHC
T ss_pred CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhC
Confidence 466666654421 1112444444788999999998876531 112367899999999885 6677788888889
Q ss_pred cccccccccccc
Q 042404 73 PLLESLSLSYFD 84 (311)
Q Consensus 73 p~Le~L~l~~c~ 84 (311)
|+|++|++.+|.
T Consensus 211 ~~L~~L~L~~~~ 222 (594)
T 2p1m_B 211 PNLKSLKLNRAV 222 (594)
T ss_dssp TTCCEEECCTTS
T ss_pred CCCcEEecCCCC
Confidence 999999999883
No 28
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.04 E-value=1.7e-12 Score=118.62 Aligned_cols=83 Identities=19% Similarity=0.178 Sum_probs=41.9
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeCC------CCCCCCCCcccEEEeeeeeeChHHHHHHHhcCc--
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFDP------PLTFTGFPCLRSLNLHQVLVAPEAIESLISSCP-- 73 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp-- 73 (311)
++++|+|.........++..+..+++|++|+|++|.+.. +..+..+++|++|+|+++.+.+..+..+...++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 345566544432111222223445566666666665541 122334566666666666655544555444444
Q ss_pred --ccccccccccc
Q 042404 74 --LLESLSLSYFD 84 (311)
Q Consensus 74 --~Le~L~l~~c~ 84 (311)
+|++|++.+|.
T Consensus 84 ~~~L~~L~L~~n~ 96 (461)
T 1z7x_W 84 SCKIQKLSLQNCC 96 (461)
T ss_dssp TCCCCEEECTTSC
T ss_pred CCceeEEEccCCC
Confidence 46666666654
No 29
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.04 E-value=3.5e-11 Score=104.02 Aligned_cols=181 Identities=20% Similarity=0.183 Sum_probs=113.0
Q ss_pred eeecCCCcccCCCCcEEEccceeeC-CCC-CCCCCCcccEEEeeeeeeChHH-HHHHHhcCcccccccccccccee---E
Q 042404 15 WFRVPSCLFNCRKLTRLELFRCEFD-PPL-TFTGFPCLRSLNLHQVLVAPEA-IESLISSCPLLESLSLSYFDSLD---L 88 (311)
Q Consensus 15 ~~~lp~~~~~~~~L~~L~L~~~~l~-~~~-~~~~l~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le~L~l~~c~~~~---~ 88 (311)
...+|..+. ++|++|+|+++.+. .|. .+.++++|+.|+|+++.+.... ....+.++++|++|++.++.... .
T Consensus 19 l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~ 96 (306)
T 2z66_A 19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 96 (306)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE
T ss_pred cccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh
Confidence 456777554 68999999999886 333 3678999999999999876321 12224579999999999987544 2
Q ss_pred EEeCCCceEEEeece-eeee----eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEEe
Q 042404 89 NICAPELKYLYLEGE-FKDI----HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYL 163 (311)
Q Consensus 89 ~i~~~~L~~L~i~~~-~~~~----~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l 163 (311)
....++|++|.+.++ ...+ .+..+++|+.++++.+...+ .....+..+++|+.|++..+.+..
T Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~- 164 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-----------AFNGIFNGLSSLEVLKMAGNSFQE- 164 (306)
T ss_dssp EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE-----------CSTTTTTTCTTCCEEECTTCEEGG-
T ss_pred cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc-----------cchhhcccCcCCCEEECCCCcccc-
Confidence 334689999999885 2222 34578889999886654321 112335667777888777665431
Q ss_pred ecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEecc
Q 042404 164 SIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSS 217 (311)
Q Consensus 164 ~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~ 217 (311)
...+..+ ..+++|++|.+....+.. ..+..+..+|+|+.|++..+.
T Consensus 165 --~~~~~~~-~~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 165 --NFLPDIF-TELRNLTFLDLSQCQLEQ-----LSPTAFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp --GEECSCC-TTCTTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECTTSC
T ss_pred --ccchhHH-hhCcCCCEEECCCCCcCC-----cCHHHhcCCCCCCEEECCCCc
Confidence 0012222 245667777663211111 112345566777777776554
No 30
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.04 E-value=1e-11 Score=108.75 Aligned_cols=221 Identities=16% Similarity=0.135 Sum_probs=140.9
Q ss_pred cccC--CCCcEEEccceeeC-CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccccee----EEEeCCC
Q 042404 22 LFNC--RKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLD----LNICAPE 94 (311)
Q Consensus 22 ~~~~--~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~----~~i~~~~ 94 (311)
+... +.++.|++.++.+. .++.+.++++|+.|+++++.+.+..+...+..||+|++|++.+|...+ .....++
T Consensus 64 ~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~ 143 (336)
T 2ast_B 64 TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN 143 (336)
T ss_dssp HHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTT
T ss_pred HHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCC
Confidence 3444 78999999998875 334466789999999999999887788889999999999999986432 1113689
Q ss_pred ceEEEeece--eee--e--eecCCCCcceeEEEEE-EccccchhhcccccchHHHHhcCCC-cceEEEEeeeEEEEeecC
Q 042404 95 LKYLYLEGE--FKD--I--HLESTPLLVSMSIAMY-MTDDIAEHFEQSSSCNFLKILGGVP-HLEKLVGYIYFTKYLSIG 166 (311)
Q Consensus 95 L~~L~i~~~--~~~--~--~i~~~p~L~~l~l~~~-~~~~~~~~~~~~~~~~~~~~l~~l~-~l~~L~l~~~~~~~l~~~ 166 (311)
|++|.+.++ +.. + .+..+|+|++++++.+ ...+ ..+...+..++ +|+.|++.++... +..+
T Consensus 144 L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~----------~~~~~~~~~l~~~L~~L~l~~~~~~-~~~~ 212 (336)
T 2ast_B 144 LVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE----------KHVQVAVAHVSETITQLNLSGYRKN-LQKS 212 (336)
T ss_dssp CSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH----------HHHHHHHHHSCTTCCEEECCSCGGG-SCHH
T ss_pred CCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh----------HHHHHHHHhcccCCCEEEeCCCccc-CCHH
Confidence 999999986 221 1 2457899999999877 3321 12456677888 9999999876210 0000
Q ss_pred CCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccCCcccccCCCchhhcccccCcccccceeE
Q 042404 167 DDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSNTLAAIEAPDLDFWEKECHADCSFKQLKL 246 (311)
Q Consensus 167 ~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~ 246 (311)
..+. ....+++|++|.+.....-.. .....+..+|+|+.|++..+... ....... . ..+++|+.
T Consensus 213 ~l~~-~~~~~~~L~~L~l~~~~~l~~----~~~~~l~~l~~L~~L~l~~~~~~-------~~~~~~~---l-~~~~~L~~ 276 (336)
T 2ast_B 213 DLST-LVRRCPNLVHLDLSDSVMLKN----DCFQEFFQLNYLQHLSLSRCYDI-------IPETLLE---L-GEIPTLKT 276 (336)
T ss_dssp HHHH-HHHHCTTCSEEECTTCTTCCG----GGGGGGGGCTTCCEEECTTCTTC-------CGGGGGG---G-GGCTTCCE
T ss_pred HHHH-HHhhCCCCCEEeCCCCCcCCH----HHHHHHhCCCCCCEeeCCCCCCC-------CHHHHHH---H-hcCCCCCE
Confidence 1111 123578899999843221111 12234677899999999877421 1111111 1 12588999
Q ss_pred EEEEeecCCcchHHHHHHHHccCcccc
Q 042404 247 VKMTDISGVPHEMELIKFLLSNSPVLE 273 (311)
Q Consensus 247 v~i~~~~g~~~~~~l~~~ll~~a~~Le 273 (311)
+.+.|. -..+.+..+.++.+.|+
T Consensus 277 L~l~~~----i~~~~~~~l~~~l~~L~ 299 (336)
T 2ast_B 277 LQVFGI----VPDGTLQLLKEALPHLQ 299 (336)
T ss_dssp EECTTS----SCTTCHHHHHHHSTTSE
T ss_pred EeccCc----cCHHHHHHHHhhCcceE
Confidence 888765 11222334445555555
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.04 E-value=3.5e-10 Score=103.68 Aligned_cols=227 Identities=15% Similarity=0.167 Sum_probs=107.2
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLS 81 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 81 (311)
++++|+|..+.. ..+|. +..+++|++|+|++|.+...+.+.++++|++|+++++.+.+-. . +..+++|++|++.
T Consensus 69 ~L~~L~Ls~n~l--~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~l~ 142 (466)
T 1o6v_A 69 NLTQINFSNNQL--TDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID--P-LKNLTNLNRLELS 142 (466)
T ss_dssp TCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCSEEEEE
T ss_pred CCCEEECCCCcc--CCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCCh--H-HcCCCCCCEEECC
Confidence 445555544322 23333 5555666666666655542222555666666666665554321 1 4556666666666
Q ss_pred cccceeE--EEeCCCceEEEeeceeee-eeecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeee
Q 042404 82 YFDSLDL--NICAPELKYLYLEGEFKD-IHLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIY 158 (311)
Q Consensus 82 ~c~~~~~--~i~~~~L~~L~i~~~~~~-~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~ 158 (311)
+|....+ ....++|+.|.+...... ..+..+++|+.++++.+...+ ...+..+++|+.|++..+
T Consensus 143 ~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 143 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-------------ISVLAKLTNLESLIATNN 209 (466)
T ss_dssp EEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC-------------CGGGGGCTTCSEEECCSS
T ss_pred CCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC-------------ChhhccCCCCCEEEecCC
Confidence 5542211 112245555555432211 123455566666555443221 111345566666666554
Q ss_pred EEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccCCcccccCCCchhhcccccCc
Q 042404 159 FTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSNTLAAIEAPDLDFWEKECHAD 238 (311)
Q Consensus 159 ~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (311)
.+..+. + ...+++|++|.+....+.. + ..+..+++|+.|++..+..... . +-
T Consensus 210 ~l~~~~----~---~~~l~~L~~L~l~~n~l~~---~----~~l~~l~~L~~L~l~~n~l~~~------~--------~~ 261 (466)
T 1o6v_A 210 QISDIT----P---LGILTNLDELSLNGNQLKD---I----GTLASLTNLTDLDLANNQISNL------A--------PL 261 (466)
T ss_dssp CCCCCG----G---GGGCTTCCEEECCSSCCCC---C----GGGGGCTTCSEEECCSSCCCCC------G--------GG
T ss_pred cccccc----c---ccccCCCCEEECCCCCccc---c----hhhhcCCCCCEEECCCCccccc------h--------hh
Confidence 332110 0 1235566666663211111 1 1245666666666665432210 0 11
Q ss_pred ccccceeEEEEEeecCCcchHHHHHHHHccCcccceEEEEecc
Q 042404 239 CSFKQLKLVKMTDISGVPHEMELIKFLLSNSPVLEIMSITPCT 281 (311)
Q Consensus 239 ~~~~~Lk~v~i~~~~g~~~~~~l~~~ll~~a~~Le~l~i~~~~ 281 (311)
..+++|+.+.+.+-.-.... . +.+.+.|+.+.+....
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~-~-----~~~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNIS-P-----LAGLTALTNLELNENQ 298 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCG-G-----GTTCTTCSEEECCSSC
T ss_pred hcCCCCCEEECCCCccCccc-c-----ccCCCccCeEEcCCCc
Confidence 23467777776642211111 0 5677888888887543
No 32
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.03 E-value=1.5e-11 Score=119.67 Aligned_cols=132 Identities=20% Similarity=0.204 Sum_probs=65.9
Q ss_pred ecCCCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccccee----EEE
Q 042404 17 RVPSCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLD----LNI 90 (311)
Q Consensus 17 ~lp~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~----~~i 90 (311)
.+|..+..+++|++|+|++|.+. .|..+..+++|+.|+++++.+.+. ++..+..+++|+.|++.+|...+ ...
T Consensus 409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 487 (768)
T 3rgz_A 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE-IPQELMYVKTLETLILDFNDLTGEIPSGLS 487 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCc-CCHHHcCCCCceEEEecCCcccCcCCHHHh
Confidence 45555556666666666665553 334455556666666666555432 22224455666666665554322 111
Q ss_pred eCCCceEEEeecee-e-e--eeecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEE
Q 042404 91 CAPELKYLYLEGEF-K-D--IHLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFT 160 (311)
Q Consensus 91 ~~~~L~~L~i~~~~-~-~--~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~ 160 (311)
..++|+.|.+.++. . . ..+..+++|+.++++.+...+ .+...++.+++|+.|++..+.+
T Consensus 488 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-----------~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG-----------NIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE-----------ECCGGGGGCTTCCEEECCSSEE
T ss_pred cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC-----------cCCHHHcCCCCCCEEECCCCcc
Confidence 23455556555541 1 1 123345555555555443221 1123345667777777766544
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.03 E-value=4.1e-11 Score=107.24 Aligned_cols=121 Identities=17% Similarity=0.209 Sum_probs=75.1
Q ss_pred CceEEEEEeCCCeeeecCCCc-ccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCL-FNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESL 78 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~-~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 78 (311)
+++.|++.-.. ...+|..+ ..+++|++|+|+++.+. .+..+..+++|++|+|+++.+... ....+.++++|++|
T Consensus 46 ~l~~l~l~~~~--l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 46 NQKIVTFKNST--MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVL 122 (390)
T ss_dssp CCSEEEEESCE--ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred CceEEEecCCc--hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEE
Confidence 45666665442 34567664 45778888888877765 334567778888888887776542 22335677888888
Q ss_pred ccccccceeE----EEeCCCceEEEeece-eeee---eecCCCCcceeEEEEEEc
Q 042404 79 SLSYFDSLDL----NICAPELKYLYLEGE-FKDI---HLESTPLLVSMSIAMYMT 125 (311)
Q Consensus 79 ~l~~c~~~~~----~i~~~~L~~L~i~~~-~~~~---~i~~~p~L~~l~l~~~~~ 125 (311)
++.+|....+ ....++|++|.+.++ ...+ .+..+++|+.++++.+..
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC
Confidence 8877753331 123467777777764 2222 244667777777766543
No 34
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.01 E-value=1.3e-11 Score=116.87 Aligned_cols=106 Identities=20% Similarity=0.185 Sum_probs=57.1
Q ss_pred ecCCC-cccCCCCcEEEccceeeC-CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccccee-E----E
Q 042404 17 RVPSC-LFNCRKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLD-L----N 89 (311)
Q Consensus 17 ~lp~~-~~~~~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~-~----~ 89 (311)
.+|.. +..+++|++|+|++|.+. .|..+..+++|++|+++++.+... ....+..+++|++|++.+|.... + .
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred ccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcC-chhhhhccCcCCEEECCCCCcccccchhhh
Confidence 34433 556677777777777664 445566677777777777766542 22235566777777776664321 1 1
Q ss_pred EeCCCceEEEeece-eeee-----eecCCCCcceeEEEEE
Q 042404 90 ICAPELKYLYLEGE-FKDI-----HLESTPLLVSMSIAMY 123 (311)
Q Consensus 90 i~~~~L~~L~i~~~-~~~~-----~i~~~p~L~~l~l~~~ 123 (311)
...++|++|.+.++ .... .+..+++|+.++++.+
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 386 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC
Confidence 12345555555553 1111 1334555555555443
No 35
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.01 E-value=4.2e-12 Score=111.21 Aligned_cols=195 Identities=14% Similarity=0.115 Sum_probs=117.4
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeC---CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFD---PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESL 78 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~---~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 78 (311)
+++.|++.-. .....+..++.+++|++|+|++|.+. .+..+.++++|++|+++++.+.+... ..++.|++|++|
T Consensus 71 ~l~~L~l~~n--~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~-~~l~~~~~L~~L 147 (336)
T 2ast_B 71 GVIAFRCPRS--FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV-NTLAKNSNLVRL 147 (336)
T ss_dssp TCSEEECTTC--EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHH-HHHTTCTTCSEE
T ss_pred cceEEEcCCc--cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHH-HHHhcCCCCCEE
Confidence 4555654322 22334455678889999999988775 23345678889999998888776633 446778899999
Q ss_pred cccccccee------EEEeCCCceEEEeece-e-ee--e--eecCCC-CcceeEEEEEEccccchhhcccccchHHHHhc
Q 042404 79 SLSYFDSLD------LNICAPELKYLYLEGE-F-KD--I--HLESTP-LLVSMSIAMYMTDDIAEHFEQSSSCNFLKILG 145 (311)
Q Consensus 79 ~l~~c~~~~------~~i~~~~L~~L~i~~~-~-~~--~--~i~~~p-~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~ 145 (311)
++.+|..+. +.-..++|++|.+.++ . .. + .+..+| +|++++++.+... . ....+...+.
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~-~-------~~~~l~~~~~ 219 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN-L-------QKSDLSTLVR 219 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG-S-------CHHHHHHHHH
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCccc-C-------CHHHHHHHHh
Confidence 998885332 2234578888888876 2 11 1 234678 8888888776310 0 0123344556
Q ss_pred CCCcceEEEEeeeE-EEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEec
Q 042404 146 GVPHLEKLVGYIYF-TKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGS 216 (311)
Q Consensus 146 ~l~~l~~L~l~~~~-~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~ 216 (311)
.+++|+.|++..+. +.. ..+..+ ..+++|++|.+......... .+ ..+.++|+|+.|++.++
T Consensus 220 ~~~~L~~L~l~~~~~l~~----~~~~~l-~~l~~L~~L~l~~~~~~~~~---~~-~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 220 RCPNLVHLDLSDSVMLKN----DCFQEF-FQLNYLQHLSLSRCYDIIPE---TL-LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HCTTCSEEECTTCTTCCG----GGGGGG-GGCTTCCEEECTTCTTCCGG---GG-GGGGGCTTCCEEECTTS
T ss_pred hCCCCCEEeCCCCCcCCH----HHHHHH-hCCCCCCEeeCCCCCCCCHH---HH-HHHhcCCCCCEEeccCc
Confidence 77888888887653 211 111122 24677777777321111111 11 23566888888888765
No 36
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.01 E-value=9.9e-12 Score=108.20 Aligned_cols=96 Identities=16% Similarity=0.162 Sum_probs=53.1
Q ss_pred CCCCcEEEccceeeCC--CCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeEEEeCCCceEEEeec
Q 042404 25 CRKLTRLELFRCEFDP--PLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDLNICAPELKYLYLEG 102 (311)
Q Consensus 25 ~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~i~~~~L~~L~i~~ 102 (311)
+++|++|+|++|.+.. |..+..+++|+.|+|+++.+.+.. + +..+++|++|++.+|...++. ..++|+.|.+.+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~--~~~l~~L~~L~Ls~n~l~~l~-~~~~L~~L~l~~ 108 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNYVQELL-VGPSIETLHAAN 108 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-E--ETTCTTCCEEECCSSEEEEEE-ECTTCCEEECCS
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-h--hhhcCCCCEEECcCCcccccc-CCCCcCEEECCC
Confidence 4567777777766642 223556677777777766654321 1 556677777777666532222 235666666665
Q ss_pred e-eeeeeecCCCCcceeEEEEEE
Q 042404 103 E-FKDIHLESTPLLVSMSIAMYM 124 (311)
Q Consensus 103 ~-~~~~~i~~~p~L~~l~l~~~~ 124 (311)
+ ...+.....++|+.++++.+.
T Consensus 109 n~l~~~~~~~~~~L~~L~l~~N~ 131 (317)
T 3o53_A 109 NNISRVSCSRGQGKKNIYLANNK 131 (317)
T ss_dssp SCCSEEEECCCSSCEEEECCSSC
T ss_pred CccCCcCccccCCCCEEECCCCC
Confidence 4 233333345556666555443
No 37
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.01 E-value=2.9e-11 Score=111.51 Aligned_cols=174 Identities=14% Similarity=0.150 Sum_probs=81.2
Q ss_pred CCcEEEccceeeCC--CCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeEEEeCCCceEEEeece-
Q 042404 27 KLTRLELFRCEFDP--PLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDLNICAPELKYLYLEGE- 103 (311)
Q Consensus 27 ~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~i~~~~L~~L~i~~~- 103 (311)
+|++|+|++|.+.. |..+..+++|++|+|+++.+.+. .+ +..+++|+.|++++|....+. ..++|+.|.+.++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~--l~~l~~L~~L~Ls~N~l~~l~-~~~~L~~L~L~~N~ 110 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LD--LESLSTLRTLDLNNNYVQELL-VGPSIETLHAANNN 110 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEE-EE--CTTCTTCCEEECCSSEEEEEE-ECTTCCEEECCSSC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCC-cc--cccCCCCCEEEecCCcCCCCC-CCCCcCEEECcCCc
Confidence 56666666665542 23455666666666666655432 11 455666666666665432222 2255666655553
Q ss_pred eeeeeecCCCCcceeEEEEEEccccchh-hc-----------cc--ccchHHHHhcCCCcceEEEEeeeEEEEeecCCCC
Q 042404 104 FKDIHLESTPLLVSMSIAMYMTDDIAEH-FE-----------QS--SSCNFLKILGGVPHLEKLVGYIYFTKYLSIGDDP 169 (311)
Q Consensus 104 ~~~~~i~~~p~L~~l~l~~~~~~~~~~~-~~-----------~~--~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~ 169 (311)
...+.....++|+.++++.+...+..+. +. .. .......+...+++|+.|+++.+.+..+..
T Consensus 111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~---- 186 (487)
T 3oja_A 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG---- 186 (487)
T ss_dssp CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC----
T ss_pred CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc----
Confidence 2222223445555555544432221000 00 00 000112222345666666666555433210
Q ss_pred CCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEecc
Q 042404 170 GRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSS 217 (311)
Q Consensus 170 ~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~ 217 (311)
.. .+++|+.|.+....+. .++.-+..+++|+.|++..+.
T Consensus 187 --~~-~l~~L~~L~Ls~N~l~------~~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 187 --QV-VFAKLKTLDLSSNKLA------FMGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp --CC-CCTTCCEEECCSSCCC------EECGGGGGGTTCSEEECTTSC
T ss_pred --cc-cCCCCCEEECCCCCCC------CCCHhHcCCCCccEEEecCCc
Confidence 11 2566777766321111 122225566777777776554
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.00 E-value=3.9e-11 Score=113.42 Aligned_cols=122 Identities=16% Similarity=0.207 Sum_probs=88.0
Q ss_pred CceEEEEEeCCCeeeecCCCc-ccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCL-FNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESL 78 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~-~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 78 (311)
+++.+++.-+ ....+|..+ ..+++|++|+|++|.+. .+..+..+++|+.|+|+++.+..- .+..+.++++|+.|
T Consensus 52 ~l~~l~l~~~--~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 128 (597)
T 3oja_B 52 NQKIVTFKNS--TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVL 128 (597)
T ss_dssp CCSEEEESSC--EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred CceEEEeeCC--CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEE
Confidence 3455554333 345688775 46899999999999876 345788999999999999987663 33446789999999
Q ss_pred ccccccceeE----EEeCCCceEEEeece-eeee---eecCCCCcceeEEEEEEcc
Q 042404 79 SLSYFDSLDL----NICAPELKYLYLEGE-FKDI---HLESTPLLVSMSIAMYMTD 126 (311)
Q Consensus 79 ~l~~c~~~~~----~i~~~~L~~L~i~~~-~~~~---~i~~~p~L~~l~l~~~~~~ 126 (311)
++.+|....+ ....++|++|.+.++ +..+ .+..+++|+.++++.+...
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence 9999864332 124578999999886 3332 3567889999988766543
No 39
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.00 E-value=1.6e-11 Score=109.75 Aligned_cols=253 Identities=15% Similarity=0.073 Sum_probs=146.7
Q ss_pred eecCCCcccCCCCcEEEccceeeCC------CCCCCCCCcccEEEeeeeeeC---h------HHHHHHHhcCcccccccc
Q 042404 16 FRVPSCLFNCRKLTRLELFRCEFDP------PLTFTGFPCLRSLNLHQVLVA---P------EAIESLISSCPLLESLSL 80 (311)
Q Consensus 16 ~~lp~~~~~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~~~---~------~~l~~ll~~cp~Le~L~l 80 (311)
..++..+..+++|++|+|++|.+.. +..+..+++|++|+|+++.+. + ..+...+..+++|++|++
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 3566667778889999999888752 123567888999988886433 1 123344567889999998
Q ss_pred cccccee--------EEEeCCCceEEEeecee-ee---eeec----CC---------CCcceeEEEEEEccccchhhccc
Q 042404 81 SYFDSLD--------LNICAPELKYLYLEGEF-KD---IHLE----ST---------PLLVSMSIAMYMTDDIAEHFEQS 135 (311)
Q Consensus 81 ~~c~~~~--------~~i~~~~L~~L~i~~~~-~~---~~i~----~~---------p~L~~l~l~~~~~~~~~~~~~~~ 135 (311)
.+|.... .-...++|++|.+.++. .. ..+. .. ++|+.++++.+...+.
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~------- 174 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG------- 174 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG-------
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH-------
Confidence 8875322 11245788888888752 11 1111 22 8888888877654310
Q ss_pred ccchHHHHhcCCCcceEEEEeeeEEEEeecC-CCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEE
Q 042404 136 SSCNFLKILGGVPHLEKLVGYIYFTKYLSIG-DDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHIS 214 (311)
Q Consensus 136 ~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~-~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~ 214 (311)
....+...+..+++|+.|++..+.+...... ..+..+ ..+++|++|.+.. +.-...+...++..+..+|+|+.|++.
T Consensus 175 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l-~~~~~L~~L~Ls~-n~l~~~g~~~l~~~l~~~~~L~~L~L~ 252 (386)
T 2ca6_A 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL-AYCQELKVLDLQD-NTFTHLGSSALAIALKSWPNLRELGLN 252 (386)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG-GGCTTCCEEECCS-SCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHh-hcCCCccEEECcC-CCCCcHHHHHHHHHHccCCCcCEEECC
Confidence 1112234566778899998887754311000 001112 2577888888832 222222345677788889999999887
Q ss_pred eccCCcccccCCCchhhcccccCcccccceeEEEEEeecCCcc-hHHHHHHHHccCcccceEEEEecccc
Q 042404 215 GSSNTLAAIEAPDLDFWEKECHADCSFKQLKLVKMTDISGVPH-EMELIKFLLSNSPVLEIMSITPCTFV 283 (311)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~v~i~~~~g~~~-~~~l~~~ll~~a~~Le~l~i~~~~~~ 283 (311)
.+......... -...+ ....+++|+.+.+.+-.-... ...+...+..+.+.|+.+.+......
T Consensus 253 ~n~i~~~~~~~-l~~~l-----~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 253 DCLLSARGAAA-VVDAF-----SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp TCCCCHHHHHH-HHHHH-----HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CCCCchhhHHH-HHHHH-----hhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 66432110000 00000 001257777777664322221 22355666677888988888766543
No 40
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.00 E-value=5.5e-11 Score=101.02 Aligned_cols=131 Identities=18% Similarity=0.165 Sum_probs=76.3
Q ss_pred eecCCCcccCCCCcEEEccceeeCC--CCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeEE----
Q 042404 16 FRVPSCLFNCRKLTRLELFRCEFDP--PLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDLN---- 89 (311)
Q Consensus 16 ~~lp~~~~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~---- 89 (311)
..+|..+. ++|++|+|+++.+.. +..+.++++|++|+++++.+..- ....+..+++|++|++.++....+.
T Consensus 29 ~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 105 (270)
T 2o6q_A 29 TAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKLQALPIGVF 105 (270)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCCCCCCTTTT
T ss_pred CccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcCCcCCHhHc
Confidence 45666554 678889998887752 33577888999999988876532 2233567888888888877532211
Q ss_pred EeCCCceEEEeece-eeee---eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEE
Q 042404 90 ICAPELKYLYLEGE-FKDI---HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFT 160 (311)
Q Consensus 90 i~~~~L~~L~i~~~-~~~~---~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~ 160 (311)
...++|++|.+.++ ...+ .+..+++|+.++++.+...+.. ...+..+++|+.|++..+.+
T Consensus 106 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----------~~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP-----------KGVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----------TTTTTTCTTCCEEECCSSCC
T ss_pred ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC-----------HhHccCCcccceeEecCCcC
Confidence 12356666666653 2221 1335566666666554332110 11234556666666655543
No 41
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.00 E-value=1e-11 Score=111.10 Aligned_cols=234 Identities=15% Similarity=0.113 Sum_probs=146.3
Q ss_pred CceEEEEEeCCC---eeeecCCCcccCCCCcEEEccceeeC-----CCCCC-------CCCCcccEEEeeeeeeChH---
Q 042404 2 DIRELVLELGEG---EWFRVPSCLFNCRKLTRLELFRCEFD-----PPLTF-------TGFPCLRSLNLHQVLVAPE--- 63 (311)
Q Consensus 2 ~v~~L~l~~~~~---~~~~lp~~~~~~~~L~~L~L~~~~l~-----~~~~~-------~~l~~L~~L~L~~~~~~~~--- 63 (311)
++++|+|..+.. ....++..+..+++|++|+|++|.+. .|..+ ..+++|++|+|+++.+.+.
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 112 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence 577777754422 11235566778999999999987543 12222 5789999999999998774
Q ss_pred HHHHHHhcCcccccccccccccee---EEE-e----C---------CCceEEEeecee-e--ee-----eecCCCCccee
Q 042404 64 AIESLISSCPLLESLSLSYFDSLD---LNI-C----A---------PELKYLYLEGEF-K--DI-----HLESTPLLVSM 118 (311)
Q Consensus 64 ~l~~ll~~cp~Le~L~l~~c~~~~---~~i-~----~---------~~L~~L~i~~~~-~--~~-----~i~~~p~L~~l 118 (311)
.+...+..|++|++|.|.+|.... ..+ . . ++|++|.+.++. . .+ .+..+++|+.+
T Consensus 113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 192 (386)
T 2ca6_A 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence 466678899999999999987421 011 1 1 799999999862 2 11 23478899999
Q ss_pred EEEEEEccccchhhcccccchHHH-HhcCCCcceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHH
Q 042404 119 SIAMYMTDDIAEHFEQSSSCNFLK-ILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILV 197 (311)
Q Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~ 197 (311)
.++.+..... ....+.. .+..+++|+.|++..+.+........+..+ ..+++|++|.+.. +.-...+...
T Consensus 193 ~L~~n~l~~~-------g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l-~~~~~L~~L~L~~-n~i~~~~~~~ 263 (386)
T 2ca6_A 193 KMVQNGIRPE-------GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL-KSWPNLRELGLND-CLLSARGAAA 263 (386)
T ss_dssp ECCSSCCCHH-------HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG-GGCTTCCEEECTT-CCCCHHHHHH
T ss_pred ECcCCCCCHh-------HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH-ccCCCcCEEECCC-CCCchhhHHH
Confidence 9987654310 0011233 567889999999988764211001112112 2578899999843 2223334556
Q ss_pred HHHHHhc--CCCcceEEEEeccCCcccccCCCchhhcccccCcccccceeEEEEEe
Q 042404 198 VIRLITN--SPNLKELHISGSSNTLAAIEAPDLDFWEKECHADCSFKQLKLVKMTD 251 (311)
Q Consensus 198 l~~~l~~--~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~v~i~~ 251 (311)
++..+.. +|+|+.|++..+....... ...... ....+++|+.+.+.+
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~-----~~l~~~--l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAV-----RTLKTV--IDEKMPDLLFLELNG 312 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHH-----HHHHHH--HHHHCTTCCEEECTT
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHH-----HHHHHH--HHhcCCCceEEEccC
Confidence 7777755 9999999998765432100 000000 001258888888775
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.98 E-value=5.1e-12 Score=115.49 Aligned_cols=216 Identities=17% Similarity=0.138 Sum_probs=124.8
Q ss_pred CCceEEEEEeCCCe---eeecCCCcccCCCCcEEEccceeeCC--CCC-CCCCC----cccEEEeeeeeeCh---HHHHH
Q 042404 1 NDIRELVLELGEGE---WFRVPSCLFNCRKLTRLELFRCEFDP--PLT-FTGFP----CLRSLNLHQVLVAP---EAIES 67 (311)
Q Consensus 1 ~~v~~L~l~~~~~~---~~~lp~~~~~~~~L~~L~L~~~~l~~--~~~-~~~l~----~L~~L~L~~~~~~~---~~l~~ 67 (311)
+++++|+|..+... ...+|..+..+++|++|+|++|.+.. +.. +..++ +|++|+|++|.+.+ ..+..
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 36788888866532 12567777788999999999887642 111 11333 69999999988876 34666
Q ss_pred HHhcCcccccccccccccee-----E----EEeCCCceEEEeecee-ee-----e--eecCCCCcceeEEEEEEccccc-
Q 042404 68 LISSCPLLESLSLSYFDSLD-----L----NICAPELKYLYLEGEF-KD-----I--HLESTPLLVSMSIAMYMTDDIA- 129 (311)
Q Consensus 68 ll~~cp~Le~L~l~~c~~~~-----~----~i~~~~L~~L~i~~~~-~~-----~--~i~~~p~L~~l~l~~~~~~~~~- 129 (311)
.+..+++|++|++.+|...+ + .-..++|++|.+.++. .. + .+..+++|++++++.+...+..
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 67889999999998876321 1 1113468888887752 11 0 1234577888777665432110
Q ss_pred ----h-------hhc----------ccccchHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeee
Q 042404 130 ----E-------HFE----------QSSSCNFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVS 188 (311)
Q Consensus 130 ----~-------~~~----------~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~ 188 (311)
. ... ......+...+..+++|+.|++..+.+...........+...+++|++|.+.. +
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~-n 266 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE-C 266 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT-S
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC-C
Confidence 0 000 00001234455566777777777654321110000001111356788888733 2
Q ss_pred cCCHHHHHHHHHHHhcCCCcceEEEEecc
Q 042404 189 FEDMKEILVVIRLITNSPNLKELHISGSS 217 (311)
Q Consensus 189 ~~~~~~~~~l~~~l~~~p~L~~L~i~~~~ 217 (311)
.-...++..++..+..+++|++|++..+.
T Consensus 267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 267 GITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp CCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred CCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 22333445577778888888888887654
No 43
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.98 E-value=1.5e-10 Score=110.16 Aligned_cols=122 Identities=15% Similarity=0.188 Sum_probs=86.9
Q ss_pred CCceEEEEEeCCCeeee------------------cCCCcc--cCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeee
Q 042404 1 NDIRELVLELGEGEWFR------------------VPSCLF--NCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQV 58 (311)
Q Consensus 1 ~~v~~L~l~~~~~~~~~------------------lp~~~~--~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~ 58 (311)
+++++|+|..... .. +|..++ ++++|++|+|++|.+. .|..+.++++|+.|+++++
T Consensus 206 ~~L~~L~Ls~n~l--~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 206 TKLRQFYMGNSPF--VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp TTCCEEEEESCCC--CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cCCCEEECcCCcc--ccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 3678899876643 23 999999 9999999999999764 5777889999999999999
Q ss_pred e-eChHHHHHHHhc------CccccccccccccceeEE----E-eCCCceEEEeece-ee-ee-eecCCCCcceeEEEEE
Q 042404 59 L-VAPEAIESLISS------CPLLESLSLSYFDSLDLN----I-CAPELKYLYLEGE-FK-DI-HLESTPLLVSMSIAMY 123 (311)
Q Consensus 59 ~-~~~~~l~~ll~~------cp~Le~L~l~~c~~~~~~----i-~~~~L~~L~i~~~-~~-~~-~i~~~p~L~~l~l~~~ 123 (311)
. +++..++.-+.. +++|+.|++.+|....+. + ..++|+.|.+.++ +. .+ .+..+++|+.++++.+
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN 363 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSS
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCC
Confidence 8 877334444443 589999999887643321 1 3357888888774 22 22 3445667777776654
Q ss_pred E
Q 042404 124 M 124 (311)
Q Consensus 124 ~ 124 (311)
.
T Consensus 364 ~ 364 (636)
T 4eco_A 364 Q 364 (636)
T ss_dssp E
T ss_pred c
Confidence 4
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.97 E-value=1.9e-10 Score=105.21 Aligned_cols=114 Identities=13% Similarity=0.085 Sum_probs=80.2
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLS 81 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 81 (311)
++++|++.-+.. ..+| .+..+++|++|+|++|.+...+ +..+++|+.|+++++.+.+-. +.++++|++|++.
T Consensus 43 ~L~~L~Ls~n~l--~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 43 TLTSLDCHNSSI--TDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCD 114 (457)
T ss_dssp TCCEEECCSSCC--CCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECC
T ss_pred CCCEEEccCCCc--ccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee----cCCCCcCCEEECC
Confidence 567777765543 3455 6788889999999988877543 778888999999988876642 6678888888888
Q ss_pred cccceeEEE-eCCCceEEEeece-eeeeeecCCCCcceeEEEEE
Q 042404 82 YFDSLDLNI-CAPELKYLYLEGE-FKDIHLESTPLLVSMSIAMY 123 (311)
Q Consensus 82 ~c~~~~~~i-~~~~L~~L~i~~~-~~~~~i~~~p~L~~l~l~~~ 123 (311)
++....+.+ ..++|++|.+.++ ...+.+..+++|+.++++.+
T Consensus 115 ~N~l~~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 115 TNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLN 158 (457)
T ss_dssp SSCCSCCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTC
T ss_pred CCcCCeecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCC
Confidence 875433222 2367888887775 34455667777777777655
No 45
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.97 E-value=6e-11 Score=101.05 Aligned_cols=135 Identities=16% Similarity=0.180 Sum_probs=79.9
Q ss_pred eeecCCCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeEE---
Q 042404 15 WFRVPSCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDLN--- 89 (311)
Q Consensus 15 ~~~lp~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~--- 89 (311)
...+|..+. ++|++|+|+++.+. .+..+.++++|+.|+++++.+..- ....+.++++|+.|++.++....+.
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCccCccChhh
Confidence 345666543 46778888777665 233566777788888877766532 1123456777888887776533211
Q ss_pred -EeCCCceEEEeece-ee---eeeecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEE
Q 042404 90 -ICAPELKYLYLEGE-FK---DIHLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKY 162 (311)
Q Consensus 90 -i~~~~L~~L~i~~~-~~---~~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~ 162 (311)
...++|++|.+.++ .. ...+..+++|+.++++.+...+. .+...+..+++|+.|++..+.+..
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF----------KLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC----------CCCGGGGGCTTCCEEECCSSCCCE
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee----------cCchhhccCCCCCEEECCCCCCCc
Confidence 12357777777764 21 22355677777777766543221 112335667777777777665443
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.96 E-value=3.1e-10 Score=106.32 Aligned_cols=189 Identities=20% Similarity=0.155 Sum_probs=106.6
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLS 81 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 81 (311)
++++|++..+.. ..+|..+..+ +|++|++++|.+...+. ..+++|+.|.+.++.+... .. ...+|+|+.|++.
T Consensus 283 ~L~~L~l~~~~l--~~l~~~~~~~-~L~~L~l~~n~~~~l~~-~~l~~L~~L~l~~n~~~~~-~~--~~~~~~L~~L~l~ 355 (570)
T 2z63_A 283 NVSSFSLVSVTI--ERVKDFSYNF-GWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGGNA-FS--EVDLPSLEFLDLS 355 (570)
T ss_dssp TCSEEEEESCEE--CSCCBCCSCC-CCSEEEEESCBCSSCCB-CBCSSCCEEEEESCBSCCB-CC--CCBCTTCCEEECC
T ss_pred cccEEEecCccc--hhhhhhhccC-CccEEeeccCcccccCc-ccccccCEEeCcCCccccc-cc--cccCCCCCEEeCc
Confidence 577888765532 4688888888 99999999888763322 4678888888887765432 11 1467888888887
Q ss_pred cccceeEE------EeCCCceEEEeece-eeee--eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceE
Q 042404 82 YFDSLDLN------ICAPELKYLYLEGE-FKDI--HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEK 152 (311)
Q Consensus 82 ~c~~~~~~------i~~~~L~~L~i~~~-~~~~--~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~ 152 (311)
+|...... ...++|++|.+.++ ...+ .+..+++|+.++++.+...+.. ....+..+++|+.
T Consensus 356 ~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~----------~~~~~~~l~~L~~ 425 (570)
T 2z63_A 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS----------EFSVFLSLRNLIY 425 (570)
T ss_dssp SSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCT----------TSCTTTTCTTCCE
T ss_pred CCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCcccccc----------chhhhhcCCCCCE
Confidence 77543211 12467777777774 2211 2557777777777654432110 0112456666666
Q ss_pred EEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEec
Q 042404 153 LVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGS 216 (311)
Q Consensus 153 L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~ 216 (311)
|++..+.+... .+..+ ..+++|++|.+....+.. ..++..+..+++|+.|++..+
T Consensus 426 L~l~~n~l~~~----~~~~~-~~l~~L~~L~l~~n~l~~----~~~p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 426 LDISHTHTRVA----FNGIF-NGLSSLEVLKMAGNSFQE----NFLPDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp EECTTSCCEEC----CTTTT-TTCTTCCEEECTTCEEGG----GEECSCCTTCTTCCEEECTTS
T ss_pred EeCcCCccccc----chhhh-hcCCcCcEEECcCCcCcc----ccchhhhhcccCCCEEECCCC
Confidence 66665543321 11111 235566666662211110 012334556666666666644
No 47
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.96 E-value=1.8e-10 Score=108.49 Aligned_cols=232 Identities=20% Similarity=0.166 Sum_probs=119.1
Q ss_pred CCCcccCCCCcEEEccceeeC-CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccccee----EEEeCC
Q 042404 19 PSCLFNCRKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLD----LNICAP 93 (311)
Q Consensus 19 p~~~~~~~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~----~~i~~~ 93 (311)
+..+..+++|+.|.++.+... .|..+..+++|+.|+|++|.+++..+..++.+||+|+.|++..+.... +.-..+
T Consensus 263 ~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~ 342 (592)
T 3ogk_B 263 YMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCK 342 (592)
T ss_dssp SSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCT
T ss_pred HHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCC
Confidence 344555666666666654222 233344677888888888887777777777888888888887443211 222356
Q ss_pred CceEEEeec----------e--eee--e-e-ecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEee
Q 042404 94 ELKYLYLEG----------E--FKD--I-H-LESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYI 157 (311)
Q Consensus 94 ~L~~L~i~~----------~--~~~--~-~-i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~ 157 (311)
+|++|.+.. + ... + . ...+|+|+++.+......+ ..+..+...+++|+.|++..
T Consensus 343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~----------~~~~~l~~~~~~L~~L~l~~ 412 (592)
T 3ogk_B 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN----------ESLESIGTYLKNLCDFRLVL 412 (592)
T ss_dssp TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH----------HHHHHHHHHCCSCCEEEEEE
T ss_pred CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH----------HHHHHHHhhCCCCcEEEEee
Confidence 788888873 2 111 1 1 2257788888774433221 12233333467777777752
Q ss_pred e----EEEEeecCCCCC-----CCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccCCcccccCCCc
Q 042404 158 Y----FTKYLSIGDDPG-----RLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSNTLAAIEAPDL 228 (311)
Q Consensus 158 ~----~~~~l~~~~~~~-----~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~~~~~~~~~~~ 228 (311)
. .+. ..|. .+...+++|++|.+.. +.+.. .-..+..+.+.+|+|+.|.+..+..... ..
T Consensus 413 ~~~~n~l~-----~~p~~~~~~~~~~~~~~L~~L~L~~-~~~~l-~~~~~~~~~~~~~~L~~L~L~~n~l~~~-----~~ 480 (592)
T 3ogk_B 413 LDREERIT-----DLPLDNGVRSLLIGCKKLRRFAFYL-RQGGL-TDLGLSYIGQYSPNVRWMLLGYVGESDE-----GL 480 (592)
T ss_dssp CSCCSCCS-----SCCCHHHHHHHHHHCTTCCEEEEEC-CGGGC-CHHHHHHHHHSCTTCCEEEECSCCSSHH-----HH
T ss_pred cCCCcccc-----CchHHHHHHHHHHhCCCCCEEEEec-CCCCc-cHHHHHHHHHhCccceEeeccCCCCCHH-----HH
Confidence 1 111 0000 0112366677777621 11100 1124445556677777777764432110 00
Q ss_pred hhhcccccCcccccceeEEEEEeecCCcchHHHHHHHHccCcccceEEEEecc
Q 042404 229 DFWEKECHADCSFKQLKLVKMTDISGVPHEMELIKFLLSNSPVLEIMSITPCT 281 (311)
Q Consensus 229 ~~~~~~~~~~~~~~~Lk~v~i~~~~g~~~~~~l~~~ll~~a~~Le~l~i~~~~ 281 (311)
..+ ...+++|+.+.+.+-. -...-+..+..+.+.|+.+.+..+.
T Consensus 481 ~~~------~~~~~~L~~L~l~~n~---l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 481 MEF------SRGCPNLQKLEMRGCC---FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHH------HTCCTTCCEEEEESCC---CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHH------HhcCcccCeeeccCCC---CcHHHHHHHHHhcCccCeeECcCCc
Confidence 000 0123666666666433 1223334445566777777776554
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.94 E-value=2.7e-10 Score=99.53 Aligned_cols=200 Identities=16% Similarity=0.093 Sum_probs=96.5
Q ss_pred CceEEEEEeCCCeeeecCC-CcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccc
Q 042404 2 DIRELVLELGEGEWFRVPS-CLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESL 78 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 78 (311)
+++.|+|..... ..+|. .+..+++|++|+|++|.+. .|..+.++++|++|+++++.+.. ++. ...++|++|
T Consensus 53 ~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~~--~~~~~L~~L 126 (330)
T 1xku_A 53 DTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LPE--KMPKTLQEL 126 (330)
T ss_dssp TCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CCS--SCCTTCCEE
T ss_pred CCeEEECCCCcC--CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc--cCh--hhcccccEE
Confidence 456666654433 34444 5667788888888877765 24566777888888887776542 110 112556666
Q ss_pred ccccccceeE----EEeCCCceEEEeecee-e-----eeeecCCCCcceeEEEEEEccccchhh---------ccc-ccc
Q 042404 79 SLSYFDSLDL----NICAPELKYLYLEGEF-K-----DIHLESTPLLVSMSIAMYMTDDIAEHF---------EQS-SSC 138 (311)
Q Consensus 79 ~l~~c~~~~~----~i~~~~L~~L~i~~~~-~-----~~~i~~~p~L~~l~l~~~~~~~~~~~~---------~~~-~~~ 138 (311)
.+.++....+ ....++|+.|.+.++. . ...+..+++|+.++++.+......... ... ...
T Consensus 127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~ 206 (330)
T 1xku_A 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK 206 (330)
T ss_dssp ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCE
T ss_pred ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCc
Confidence 6555532210 1123455555555431 1 011234455555554433322110000 000 000
Q ss_pred hHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccC
Q 042404 139 NFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSN 218 (311)
Q Consensus 139 ~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~ 218 (311)
.....+..+++|+.|++..+.+..+.. ..+ ..+++|++|.+....+. .++..+..+++|+.|++..+..
T Consensus 207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~-~~l~~L~~L~L~~N~l~------~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 207 VDAASLKGLNNLAKLGLSFNSISAVDN----GSL-ANTPHLRELHLNNNKLV------KVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp ECTGGGTTCTTCCEEECCSSCCCEECT----TTG-GGSTTCCEEECCSSCCS------SCCTTTTTCSSCCEEECCSSCC
T ss_pred cCHHHhcCCCCCCEEECCCCcCceeCh----hhc-cCCCCCCEEECCCCcCc------cCChhhccCCCcCEEECCCCcC
Confidence 002234566677777776665443211 111 23566666666321111 2333356667777777765543
No 49
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.93 E-value=3.2e-10 Score=111.01 Aligned_cols=125 Identities=14% Similarity=0.181 Sum_probs=90.3
Q ss_pred CCceEEEEEeCCCee-------e---------ecCCCcc--cCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeee-
Q 042404 1 NDIRELVLELGEGEW-------F---------RVPSCLF--NCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVL- 59 (311)
Q Consensus 1 ~~v~~L~l~~~~~~~-------~---------~lp~~~~--~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~- 59 (311)
+++++|+|.-+.... . .+|..+. ++++|++|+|++|.+. .|..+.++++|+.|+|+++.
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 367888987664311 1 2999988 9999999999998753 56678899999999999997
Q ss_pred eChHHHHHHHh-------cCccccccccccccceeEE-----EeCCCceEEEeece-eeee-eecCCCCcceeEEEEEEc
Q 042404 60 VAPEAIESLIS-------SCPLLESLSLSYFDSLDLN-----ICAPELKYLYLEGE-FKDI-HLESTPLLVSMSIAMYMT 125 (311)
Q Consensus 60 ~~~~~l~~ll~-------~cp~Le~L~l~~c~~~~~~-----i~~~~L~~L~i~~~-~~~~-~i~~~p~L~~l~l~~~~~ 125 (311)
+++..++.-+. .+|+|+.|++.+|....+. ...++|+.|.+.++ +..+ .+..+++|+.++++.+..
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l 607 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQI 607 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCC
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCcc
Confidence 77623443333 4569999999988744321 13468899998885 2222 455788888888876654
No 50
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.92 E-value=1.6e-10 Score=98.35 Aligned_cols=171 Identities=14% Similarity=0.098 Sum_probs=85.0
Q ss_pred cCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeE----EEeCCCceEEE
Q 042404 24 NCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDL----NICAPELKYLY 99 (311)
Q Consensus 24 ~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~----~i~~~~L~~L~ 99 (311)
.+++|+.|.+.++.+...+.+..+++|+.|+++++.+.+- . .+..+++|++|++.+|....+ ....++|++|.
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 3456666666666655444555666666666666655442 1 244566666666666543221 11234566666
Q ss_pred eece-eeee---eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCcc
Q 042404 100 LEGE-FKDI---HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPIT 175 (311)
Q Consensus 100 i~~~-~~~~---~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~ 175 (311)
+.++ ...+ .+..+++|+.++++.+...+.. ...++.+++|+.|++..+.+.. .+......
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----------~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~ 179 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP-----------KGVFDKLTNLTELDLSYNQLQS-----LPEGVFDK 179 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----------TTTTTTCTTCCEEECCSSCCCC-----CCTTTTTT
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccC-----------HHHhccCccCCEEECCCCCcCc-----cCHHHhcC
Confidence 6554 2221 1345566666666555332210 1224556666666666654332 11111123
Q ss_pred ccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccC
Q 042404 176 YNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSN 218 (311)
Q Consensus 176 f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~ 218 (311)
+++|++|.+....+.. ..+..+..+++|+.|++..++.
T Consensus 180 l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 180 LTQLKDLRLYQNQLKS-----VPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CTTCCEEECCSSCCSC-----CCTTTTTTCTTCCEEECCSSCB
T ss_pred CccCCEEECCCCcCCc-----cCHHHHhCCcCCCEEEccCCCc
Confidence 5566666663211111 1123355666666666665543
No 51
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.92 E-value=2.6e-10 Score=106.50 Aligned_cols=211 Identities=15% Similarity=0.115 Sum_probs=137.7
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLS 79 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 79 (311)
++++|+|..+... ...|..+..+++|++|+|++|.+. .|..+.++++|++|+|+++.+.+. ....+.++++|++|+
T Consensus 27 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 27 AMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLN 104 (549)
T ss_dssp TCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEEE
T ss_pred CccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCCcEEE
Confidence 5788888766542 234667889999999999999876 455688999999999999988764 344578999999999
Q ss_pred ccccccee-----EEEeCCCceEEEeece--eeee---eecCCCCcceeEEEEEEccccch-hhc-----------cccc
Q 042404 80 LSYFDSLD-----LNICAPELKYLYLEGE--FKDI---HLESTPLLVSMSIAMYMTDDIAE-HFE-----------QSSS 137 (311)
Q Consensus 80 l~~c~~~~-----~~i~~~~L~~L~i~~~--~~~~---~i~~~p~L~~l~l~~~~~~~~~~-~~~-----------~~~~ 137 (311)
+.+|.... .....++|++|.+.++ ...+ .+..+++|++++++.+...+... .+. ....
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 99986432 1223468999999885 2333 35678889999888755432110 000 0000
Q ss_pred chH-HHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEec
Q 042404 138 CNF-LKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGS 216 (311)
Q Consensus 138 ~~~-~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~ 216 (311)
..+ ..++..+++++.|++..+.+..+.. .+......+++|+.|.+....+.. .....+...+..++.|+.+++..+
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQF--SPLPVDEVSSPMKKLAFRGSVLTD-ESFNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCC--CCCSSCCCCCCCCEEEEESCEEEH-HHHHHHHGGGGGCTTCCEEEEESC
T ss_pred cccchhhHhhcccccEEEccCCccccccc--cccchhhhhhcccceeccccccch-hHHHHHHHHhhhhccccccccccc
Confidence 111 2223457788888887765432110 111223346789999984433222 334466667788899999998866
Q ss_pred c
Q 042404 217 S 217 (311)
Q Consensus 217 ~ 217 (311)
.
T Consensus 262 ~ 262 (549)
T 2z81_A 262 T 262 (549)
T ss_dssp E
T ss_pred c
Confidence 4
No 52
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.92 E-value=2.4e-10 Score=92.30 Aligned_cols=140 Identities=15% Similarity=0.114 Sum_probs=79.3
Q ss_pred ccCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccccee----EEEeCCCceEE
Q 042404 23 FNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLD----LNICAPELKYL 98 (311)
Q Consensus 23 ~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~----~~i~~~~L~~L 98 (311)
..+++|++|+++++.+...+.+..+++|++|+++++.+..- . .+..+++|++|++.+|.... .....++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 34456666666666555322455566666666666644331 1 24456666666666654321 11123566666
Q ss_pred Eeece-eee---eeecCCCCcceeEEEEEE-ccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCCC
Q 042404 99 YLEGE-FKD---IHLESTPLLVSMSIAMYM-TDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLP 173 (311)
Q Consensus 99 ~i~~~-~~~---~~i~~~p~L~~l~l~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~ 173 (311)
.+.++ ... -.+..+++|+.++++.+. ..+ +. .+..+++|+.|++..+.+.. .+ .+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~------------~~-~l~~l~~L~~L~l~~n~i~~-----~~-~l- 177 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITD------------IM-PLKTLPELKSLNIQFDGVHD-----YR-GI- 177 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC------------CG-GGGGCSSCCEEECTTBCCCC-----CT-TG-
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccc------------cH-hhcCCCCCCEEECCCCCCcC-----hH-Hh-
Confidence 66664 221 124577888888887764 221 12 35778888888888876543 22 12
Q ss_pred ccccccceEEEe
Q 042404 174 ITYNHLKVIELY 185 (311)
Q Consensus 174 ~~f~~L~~L~l~ 185 (311)
..+++|++|.+.
T Consensus 178 ~~l~~L~~L~l~ 189 (197)
T 4ezg_A 178 EDFPKLNQLYAF 189 (197)
T ss_dssp GGCSSCCEEEEC
T ss_pred ccCCCCCEEEee
Confidence 257888888883
No 53
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.92 E-value=2.3e-10 Score=108.16 Aligned_cols=198 Identities=18% Similarity=0.106 Sum_probs=126.6
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLS 79 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 79 (311)
++++|++..+.. ..+|..+..+++|++|+|++|.+. .|..+.++++|+.|+++++.+........+..+++|+.|+
T Consensus 279 ~L~~L~l~~n~l--~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 279 GLQELDLTATHL--SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356 (606)
T ss_dssp TCSEEECTTSCC--SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred CCCEEeccCCcc--CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence 455555544432 478888888999999999988875 2446778899999999988765332222356789999999
Q ss_pred cccccceeEE------EeCCCceEEEeece-eeee---eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCc
Q 042404 80 LSYFDSLDLN------ICAPELKYLYLEGE-FKDI---HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPH 149 (311)
Q Consensus 80 l~~c~~~~~~------i~~~~L~~L~i~~~-~~~~---~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 149 (311)
+.+|....+. ...++|+.|.+.++ ...+ .+..+++|+.++++.+...+. .....+..+++
T Consensus 357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~~~~l~~ 426 (606)
T 3t6q_A 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK----------DAQSPFQNLHL 426 (606)
T ss_dssp CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC----------TTCCTTTTCTT
T ss_pred CCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc----------ccchhhhCccc
Confidence 9888654322 13468899998885 2222 345788899888866543211 01223567888
Q ss_pred ceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccC
Q 042404 150 LEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSN 218 (311)
Q Consensus 150 l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~ 218 (311)
|+.|++..+.+.. ..+..+ ..+++|++|.+....+... .+ .....+..+++|+.|++..+..
T Consensus 427 L~~L~l~~n~l~~----~~~~~~-~~l~~L~~L~L~~n~l~~~-~~-~~~~~~~~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 427 LKVLNLSHSLLDI----SSEQLF-DGLPALQHLNLQGNHFPKG-NI-QKTNSLQTLGRLEILVLSFCDL 488 (606)
T ss_dssp CCEEECTTCCCBT----TCTTTT-TTCTTCCEEECTTCBCGGG-EE-CSSCGGGGCTTCCEEECTTSCC
T ss_pred CCEEECCCCccCC----cCHHHH-hCCCCCCEEECCCCCCCcc-cc-ccchhhccCCCccEEECCCCcc
Confidence 9999988775432 112222 2478888888833211110 00 0113477889999999987654
No 54
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.91 E-value=1.2e-10 Score=113.97 Aligned_cols=144 Identities=10% Similarity=0.043 Sum_probs=87.6
Q ss_pred CceEEEEEeCCCeeeecCC--CcccCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcc-cccc
Q 042404 2 DIRELVLELGEGEWFRVPS--CLFNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPL-LESL 78 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~-Le~L 78 (311)
++++|+|..+.. ..+|. .+.++++|+.|+|++|.+...+.+..+++|+.|+|+++.+. .++..+..+++ |+.|
T Consensus 549 ~L~~L~Ls~N~L--~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L 624 (876)
T 4ecn_A 549 KIQIFYMGYNNL--EEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGL 624 (876)
T ss_dssp TCCEEECCSSCC--CBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEE
T ss_pred CccEEEeeCCcC--CccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc--cchHHHhhccccCCEE
Confidence 567777766654 37888 78888888888888887753236778888888888888776 24444667787 8888
Q ss_pred ccccccceeEE-----EeCCCceEEEeecee-e----eee--ec--CCCCcceeEEEEEEccccchhhcccccchHHHHh
Q 042404 79 SLSYFDSLDLN-----ICAPELKYLYLEGEF-K----DIH--LE--STPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKIL 144 (311)
Q Consensus 79 ~l~~c~~~~~~-----i~~~~L~~L~i~~~~-~----~~~--i~--~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l 144 (311)
++.+|....+. ...++|+.|.+.++. . .+. +. ..++|+.++++.+...... ..++
T Consensus 625 ~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp-----------~~~~ 693 (876)
T 4ecn_A 625 GFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP-----------TELF 693 (876)
T ss_dssp ECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCC-----------HHHH
T ss_pred ECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccC-----------HHHH
Confidence 88887632211 111347777777642 1 110 11 3346667666655433211 2223
Q ss_pred cCCCcceEEEEeeeEE
Q 042404 145 GGVPHLEKLVGYIYFT 160 (311)
Q Consensus 145 ~~l~~l~~L~l~~~~~ 160 (311)
..+++|+.|+++.+.+
T Consensus 694 ~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 694 ATGSPISTIILSNNLM 709 (876)
T ss_dssp HTTCCCSEEECCSCCC
T ss_pred ccCCCCCEEECCCCcC
Confidence 3555566666655543
No 55
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.91 E-value=5.6e-10 Score=102.07 Aligned_cols=136 Identities=14% Similarity=0.107 Sum_probs=90.7
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLS 81 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 81 (311)
++++|+|..+.. ..+| +..+++|++|+|++|.+...+ +.++++|+.|+++++.+++- + +..+++|++|++.
T Consensus 65 ~L~~L~Ls~n~l--~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 65 GLTKLICTSNNI--TTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLNCA 135 (457)
T ss_dssp TCSEEECCSSCC--SCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEECT
T ss_pred CCCEEEccCCcC--CeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEECC
Confidence 577788766543 2344 678889999999988887543 77888899999988887653 2 6678888888888
Q ss_pred cccceeEEE-eCCCceEEEeece--eeeeeecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeee
Q 042404 82 YFDSLDLNI-CAPELKYLYLEGE--FKDIHLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIY 158 (311)
Q Consensus 82 ~c~~~~~~i-~~~~L~~L~i~~~--~~~~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~ 158 (311)
+|....+.+ ..++|+.|.+.++ ...+.+..+++|+.++++.+...+. . +..+++++.|++..+
T Consensus 136 ~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l-------------~-l~~l~~L~~L~l~~N 201 (457)
T 3bz5_A 136 RNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL-------------D-VSQNKLLNRLNCDTN 201 (457)
T ss_dssp TSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC-------------C-CTTCTTCCEEECCSS
T ss_pred CCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee-------------c-cccCCCCCEEECcCC
Confidence 876433222 2457788877775 2344566777788887766544321 1 355566666666655
Q ss_pred EE
Q 042404 159 FT 160 (311)
Q Consensus 159 ~~ 160 (311)
.+
T Consensus 202 ~l 203 (457)
T 3bz5_A 202 NI 203 (457)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 56
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.90 E-value=4.5e-10 Score=97.30 Aligned_cols=185 Identities=17% Similarity=0.148 Sum_probs=128.7
Q ss_pred ccCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeE--EEeCCCceEEEe
Q 042404 23 FNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDL--NICAPELKYLYL 100 (311)
Q Consensus 23 ~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~--~i~~~~L~~L~i 100 (311)
..+++|++|+++++.+...+.+..+++|+.|+++++.+.+-. . +..+++|+.|++.+|..-.+ ....++|+.|.+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~--~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDL 114 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEEC
T ss_pred HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCCh--h-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEEC
Confidence 357899999999998875556888999999999999886532 2 78899999999999864331 123478999999
Q ss_pred ece-eeee-eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCccccc
Q 042404 101 EGE-FKDI-HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNH 178 (311)
Q Consensus 101 ~~~-~~~~-~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~ 178 (311)
.++ ...+ .+..+++|+.++++.+...+. .. +..+++|+.|++..+.+..+ +. ...+++
T Consensus 115 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~------------~~-l~~l~~L~~L~l~~n~l~~~-----~~--l~~l~~ 174 (308)
T 1h6u_A 115 TSTQITDVTPLAGLSNLQVLYLDLNQITNI------------SP-LAGLTNLQYLSIGNAQVSDL-----TP--LANLSK 174 (308)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECCSSCCCCC------------GG-GGGCTTCCEEECCSSCCCCC-----GG--GTTCTT
T ss_pred CCCCCCCchhhcCCCCCCEEECCCCccCcC------------cc-ccCCCCccEEEccCCcCCCC-----hh--hcCCCC
Confidence 886 2222 356889999999877654321 11 57889999999988755421 11 225788
Q ss_pred cceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccCCcccccCCCchhhcccccCcccccceeEEEEEe
Q 042404 179 LKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSNTLAAIEAPDLDFWEKECHADCSFKQLKLVKMTD 251 (311)
Q Consensus 179 L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~v~i~~ 251 (311)
|++|.+....+... .. +..+++|+.|++..+..... .. -..+++|+.+.+.+
T Consensus 175 L~~L~l~~n~l~~~------~~-l~~l~~L~~L~L~~N~l~~~------~~--------l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 175 LTTLKADDNKISDI------SP-LASLPNLIEVHLKNNQISDV------SP--------LANTSNLFIVTLTN 226 (308)
T ss_dssp CCEEECCSSCCCCC------GG-GGGCTTCCEEECTTSCCCBC------GG--------GTTCTTCCEEEEEE
T ss_pred CCEEECCCCccCcC------hh-hcCCCCCCEEEccCCccCcc------cc--------ccCCCCCCEEEccC
Confidence 88888843222221 11 78899999999987654321 00 12357788888776
No 57
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.89 E-value=2e-09 Score=101.67 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=23.9
Q ss_pred ccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEecc
Q 042404 178 HLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSS 217 (311)
Q Consensus 178 ~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~ 217 (311)
+|++|.+.. +... ...++..+++++.|+.+.+....
T Consensus 205 ~L~~L~L~~-n~~~---~~~~~~~~~~l~~L~~l~l~~~~ 240 (606)
T 3vq2_A 205 KLHELTLRG-NFNS---SNIMKTCLQNLAGLHVHRLILGE 240 (606)
T ss_dssp EEEEEEEES-CCSC---HHHHHHHHHTTTTCEEEEEEEEC
T ss_pred eeeeeeccC-Cccc---hhHHHHHhccccccccccccccc
Confidence 688888732 2111 12567778999999988887543
No 58
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.88 E-value=9.6e-11 Score=110.81 Aligned_cols=76 Identities=21% Similarity=0.177 Sum_probs=39.8
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLS 81 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 81 (311)
++++|++.-... ..+| .+..+++|++|++++|.+...+.+ .+++|+.|+++++..... + -+..+++|+.|++.
T Consensus 286 ~L~~L~l~~~~~--~~l~-~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~-~--~~~~l~~L~~L~ls 358 (606)
T 3vq2_A 286 NVSAMSLAGVSI--KYLE-DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSIS-F--KKVALPSLSYLDLS 358 (606)
T ss_dssp TCSEEEEESCCC--CCCC-CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEE-C--CCCCCTTCCEEECC
T ss_pred CCCEEEecCccc--hhhh-hccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccc-h--hhccCCCCCEEECc
Confidence 456666654433 3445 566666777777776665432234 566666666665532211 0 12345555555555
Q ss_pred ccc
Q 042404 82 YFD 84 (311)
Q Consensus 82 ~c~ 84 (311)
+|.
T Consensus 359 ~n~ 361 (606)
T 3vq2_A 359 RNA 361 (606)
T ss_dssp SSC
T ss_pred CCc
Confidence 543
No 59
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.87 E-value=4.8e-10 Score=95.16 Aligned_cols=166 Identities=17% Similarity=0.135 Sum_probs=115.4
Q ss_pred CceEEEEEeCCCeeeecCC-CcccCCCCcEEEccceeeC-CCC-CCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccc
Q 042404 2 DIRELVLELGEGEWFRVPS-CLFNCRKLTRLELFRCEFD-PPL-TFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESL 78 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~l~-~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 78 (311)
++++|+|.-... ..+|. .+..+++|++|+|+++.+. .++ .+..+++|++|+++++.+..- ....+..+++|+.|
T Consensus 38 ~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 38 DTKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQLVNLAEL 114 (270)
T ss_dssp TCSEEECCSSCC--SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-CTTTTTTCSSCCEE
T ss_pred CCCEEECcCCCC--CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC-CHhHcccccCCCEE
Confidence 467777765543 35554 6778999999999999886 333 357899999999999987653 22346789999999
Q ss_pred ccccccceeE----EEeCCCceEEEeece-eeee---eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcc
Q 042404 79 SLSYFDSLDL----NICAPELKYLYLEGE-FKDI---HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHL 150 (311)
Q Consensus 79 ~l~~c~~~~~----~i~~~~L~~L~i~~~-~~~~---~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l 150 (311)
.+.++....+ ....++|++|.+.++ ...+ .+..+++|++++++.+...... ...+..+++|
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----------~~~~~~l~~L 183 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP-----------EGAFDKLTEL 183 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-----------TTTTTTCTTC
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC-----------hhHhccCCCc
Confidence 9998864331 124579999999986 3332 2557899999999776543211 2235778999
Q ss_pred eEEEEeeeEEEEeecCCCCCCCCccccccceEEEee
Q 042404 151 EKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQ 186 (311)
Q Consensus 151 ~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~ 186 (311)
+.|++..+.+.. .+......+++|+.|.+.+
T Consensus 184 ~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 184 KTLKLDNNQLKR-----VPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp CEEECCSSCCSC-----CCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCc-----CCHHHhccccCCCEEEecC
Confidence 999998876543 2222222467888888843
No 60
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.87 E-value=2e-10 Score=100.37 Aligned_cols=177 Identities=16% Similarity=0.059 Sum_probs=110.7
Q ss_pred eecCCCcccCCCCcEEEccceeeCC--CCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeEE-EeC
Q 042404 16 FRVPSCLFNCRKLTRLELFRCEFDP--PLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDLN-ICA 92 (311)
Q Consensus 16 ~~lp~~~~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~-i~~ 92 (311)
..+|..+. ++|++|+|+++.+.. +..+.++++|++|+++++.+..- .+..+..+++|++|++.++....+. .-.
T Consensus 44 ~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~ 120 (330)
T 1xku_A 44 EKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQLKELPEKMP 120 (330)
T ss_dssp CSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCSBCCSSCC
T ss_pred cccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCee-CHHHhcCCCCCCEEECCCCcCCccChhhc
Confidence 45666554 689999999998862 33578899999999999987653 2334678999999999988643311 012
Q ss_pred CCceEEEeece-eeee---eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEEeecCCC
Q 042404 93 PELKYLYLEGE-FKDI---HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYLSIGDD 168 (311)
Q Consensus 93 ~~L~~L~i~~~-~~~~---~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~ 168 (311)
++|+.|.+.++ ...+ .+..+++|+.++++.+..... ......+..+++|+.|++..+.+.. .
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~~~~~l~~L~~L~l~~n~l~~-----l 186 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------GIENGAFQGMKKLSYIRIADTNITT-----I 186 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------GBCTTGGGGCTTCCEEECCSSCCCS-----C
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc---------CcChhhccCCCCcCEEECCCCcccc-----C
Confidence 78999999885 3322 256789999999877654210 0112335677888888887665432 1
Q ss_pred CCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEecc
Q 042404 169 PGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSS 217 (311)
Q Consensus 169 ~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~ 217 (311)
+.. .+++|++|.+....+.. ..+..+..+++|+.|++..+.
T Consensus 187 ~~~---~~~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~ 227 (330)
T 1xku_A 187 PQG---LPPSLTELHLDGNKITK-----VDAASLKGLNNLAKLGLSFNS 227 (330)
T ss_dssp CSS---CCTTCSEEECTTSCCCE-----ECTGGGTTCTTCCEEECCSSC
T ss_pred Ccc---ccccCCEEECCCCcCCc-----cCHHHhcCCCCCCEEECCCCc
Confidence 211 12566666662211111 112335566666666666543
No 61
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.86 E-value=2.1e-10 Score=97.63 Aligned_cols=197 Identities=16% Similarity=0.160 Sum_probs=126.3
Q ss_pred CceEEEEEeCCCeeeecCC-CcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccc
Q 042404 2 DIRELVLELGEGEWFRVPS-CLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESL 78 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 78 (311)
++++|+|..... ..+|. .+..+++|++|+|++|.+. .+..+.++++|++|+++++.+... ....+.++++|+.|
T Consensus 29 ~l~~L~ls~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 105 (276)
T 2z62_A 29 STKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKL 105 (276)
T ss_dssp TCCEEECTTCCC--CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEE
T ss_pred CccEEECCCCcc--cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc-ChhhhcCCccccEE
Confidence 567777654433 34554 6778999999999999875 344678899999999999987653 22336789999999
Q ss_pred cccccccee---E-EEeCCCceEEEeece-eeee----eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCc
Q 042404 79 SLSYFDSLD---L-NICAPELKYLYLEGE-FKDI----HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPH 149 (311)
Q Consensus 79 ~l~~c~~~~---~-~i~~~~L~~L~i~~~-~~~~----~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 149 (311)
.+.++.... . ....++|++|.+.++ ...+ .+..+++|+.++++.+...+... .. ...+..++.
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~-~~~l~~L~~ 177 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-------TD-LRVLHQMPL 177 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-------GG-GHHHHTCTT
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH-------HH-hhhhhhccc
Confidence 999886433 1 123478999999885 2321 35578999999987765432110 11 122344444
Q ss_pred ce-EEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccCCc
Q 042404 150 LE-KLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSNTL 220 (311)
Q Consensus 150 l~-~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~~~ 220 (311)
+. .|++..+.+..+..+ .. ...+|++|.+....+.. .....+..+++|+.|++..++..+
T Consensus 178 l~l~L~ls~n~l~~~~~~-----~~-~~~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 178 LNLSLDLSLNPMNFIQPG-----AF-KEIRLKELALDTNQLKS-----VPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCEEEECCSSCCCEECTT-----SS-CSCCEEEEECCSSCCSC-----CCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cceeeecCCCcccccCcc-----cc-CCCcccEEECCCCceee-----cCHhHhcccccccEEEccCCcccc
Confidence 44 778777765543221 11 23468888873322221 112346788999999998776554
No 62
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.85 E-value=8.9e-10 Score=91.70 Aligned_cols=176 Identities=15% Similarity=0.102 Sum_probs=112.8
Q ss_pred eecCCCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeee-eChHHHHHHHhcCcccccccccccccee-----
Q 042404 16 FRVPSCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVL-VAPEAIESLISSCPLLESLSLSYFDSLD----- 87 (311)
Q Consensus 16 ~~lp~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~----- 87 (311)
..+|. +. ++|++|+|+++.+. .+..+.++++|++|+++++. ++.- ....+.++++|++|++.+|..+.
T Consensus 24 ~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 24 QRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp SSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred cccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 45666 33 38999999999876 33467889999999999986 5432 11235689999999999854433
Q ss_pred EEEeCCCceEEEeece-eeee-eecCCCCcc---eeEEEEE-EccccchhhcccccchHHHHhcCCCcce-EEEEeeeEE
Q 042404 88 LNICAPELKYLYLEGE-FKDI-HLESTPLLV---SMSIAMY-MTDDIAEHFEQSSSCNFLKILGGVPHLE-KLVGYIYFT 160 (311)
Q Consensus 88 ~~i~~~~L~~L~i~~~-~~~~-~i~~~p~L~---~l~l~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~l~-~L~l~~~~~ 160 (311)
.....++|++|.+.++ ...+ .+..+++|+ .++++.+ ...... ...+..+++++ .|++..+.+
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~-----------~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP-----------VNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEEC-----------TTTTTTTBSSEEEEECCSCCC
T ss_pred HhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcC-----------cccccchhcceeEEEcCCCCC
Confidence 2335678999999885 2222 245677777 8887766 322111 22357888999 999988766
Q ss_pred EEeecCCCCCCCCccccccceEEEeeee-cCCHHHHHHHHHHHhcC-CCcceEEEEecc
Q 042404 161 KYLSIGDDPGRLPITYNHLKVIELYQVS-FEDMKEILVVIRLITNS-PNLKELHISGSS 217 (311)
Q Consensus 161 ~~l~~~~~~~~~~~~f~~L~~L~l~~~~-~~~~~~~~~l~~~l~~~-p~L~~L~i~~~~ 217 (311)
..+.. .... .++|++|.+.... +.. .-...+..+ ++|+.|++..+.
T Consensus 169 ~~i~~-----~~~~-~~~L~~L~L~~n~~l~~-----i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 169 TSVQG-----YAFN-GTKLDAVYLNKNKYLTV-----IDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp CEECT-----TTTT-TCEEEEEECTTCTTCCE-----ECTTTTTTCSBCCSEEECTTCC
T ss_pred cccCH-----hhcC-CCCCCEEEcCCCCCccc-----CCHHHhhccccCCcEEECCCCc
Confidence 54332 1111 2578888773210 111 012346677 899999997654
No 63
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.84 E-value=9.2e-10 Score=103.15 Aligned_cols=188 Identities=13% Similarity=0.078 Sum_probs=115.2
Q ss_pred eEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeC-CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccc
Q 042404 4 RELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSY 82 (311)
Q Consensus 4 ~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~ 82 (311)
+++++...+.....+|..+..+++|++|+++++.+. .|..+..+ +|+.|++.++.+.. ++. ..+++|+.|.+.+
T Consensus 260 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~--l~~--~~l~~L~~L~l~~ 334 (570)
T 2z63_A 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ--FPT--LKLKSLKRLTFTS 334 (570)
T ss_dssp EEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS--CCB--CBCSSCCEEEEES
T ss_pred hhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc--cCc--ccccccCEEeCcC
Confidence 445554332222346677777888888888888775 44455566 88888888887662 221 4688888888888
Q ss_pred cccee-E-EEeCCCceEEEeecee-eee-----eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEE
Q 042404 83 FDSLD-L-NICAPELKYLYLEGEF-KDI-----HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLV 154 (311)
Q Consensus 83 c~~~~-~-~i~~~~L~~L~i~~~~-~~~-----~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~ 154 (311)
+.... . ....++|+.|.+.++. ... .+..+++|+.++++.+...+. ...+..+++|+.|+
T Consensus 335 n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~------------~~~~~~l~~L~~L~ 402 (570)
T 2z63_A 335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM------------SSNFLGLEQLEHLD 402 (570)
T ss_dssp CBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE------------EEEEETCTTCCEEE
T ss_pred CccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc------------cccccccCCCCEEE
Confidence 76544 1 1456788888887752 211 244778888888766543211 11156778888888
Q ss_pred EeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEecc
Q 042404 155 GYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSS 217 (311)
Q Consensus 155 l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~ 217 (311)
+..+.+... .+......+++|++|.+.. +...+ ..+..+..+++|+.|++..+.
T Consensus 403 l~~n~l~~~----~~~~~~~~l~~L~~L~l~~---n~l~~--~~~~~~~~l~~L~~L~l~~n~ 456 (570)
T 2z63_A 403 FQHSNLKQM----SEFSVFLSLRNLIYLDISH---THTRV--AFNGIFNGLSSLEVLKMAGNS 456 (570)
T ss_dssp CTTSEEESC----TTSCTTTTCTTCCEEECTT---SCCEE--CCTTTTTTCTTCCEEECTTCE
T ss_pred ccCCccccc----cchhhhhcCCCCCEEeCcC---Ccccc--cchhhhhcCCcCcEEECcCCc
Confidence 887765431 1111122467788877732 11111 123456778888888887664
No 64
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.84 E-value=1.7e-09 Score=106.30 Aligned_cols=156 Identities=18% Similarity=0.121 Sum_probs=91.4
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLS 79 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 79 (311)
++++|+|.-+... ...|..+..+++|+.|+|++|.+. .+..+.++++|+.|+|+++.+... ....+.++++|+.|+
T Consensus 267 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 267 SVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL-YSSNFYGLPKVAYID 344 (844)
T ss_dssp CCCEEECTTCCCC-EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC-CSCSCSSCTTCCEEE
T ss_pred CccEEECCCCccc-ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc-CHHHhcCCCCCCEEE
Confidence 4667776544331 234556677888888888888775 345677888888888888877542 223356788888888
Q ss_pred cccccceeE----EEeCCCceEEEeecee-eeeeecCCCCcceeEEEEEEccccchhh--------ccc--ccchHHHHh
Q 042404 80 LSYFDSLDL----NICAPELKYLYLEGEF-KDIHLESTPLLVSMSIAMYMTDDIAEHF--------EQS--SSCNFLKIL 144 (311)
Q Consensus 80 l~~c~~~~~----~i~~~~L~~L~i~~~~-~~~~i~~~p~L~~l~l~~~~~~~~~~~~--------~~~--~~~~~~~~l 144 (311)
+.++....+ .-..++|+.|.+.++. .. +...|+|+.+.++.+......... ... ........+
T Consensus 345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~ 422 (844)
T 3j0a_A 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT--IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFL 422 (844)
T ss_dssp CCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC--CSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHH
T ss_pred CCCCCCCccChhhhcCCCCCCEEECCCCCCCc--ccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhh
Confidence 887753221 1234678888887742 22 234666777776655433211000 000 000112334
Q ss_pred cCCCcceEEEEeeeEEE
Q 042404 145 GGVPHLEKLVGYIYFTK 161 (311)
Q Consensus 145 ~~l~~l~~L~l~~~~~~ 161 (311)
..+++|+.|++..+.+.
T Consensus 423 ~~l~~L~~L~Ls~N~l~ 439 (844)
T 3j0a_A 423 LRVPHLQILILNQNRFS 439 (844)
T ss_dssp TTCTTCCEEEEESCCCC
T ss_pred hcCCccceeeCCCCccc
Confidence 56777777777766543
No 65
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.82 E-value=2.7e-10 Score=108.51 Aligned_cols=196 Identities=15% Similarity=0.124 Sum_probs=114.4
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeC-CCCCCCCCCc-ccEEEeeeeeeChHHHHHHHhc--Cccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFD-PPLTFTGFPC-LRSLNLHQVLVAPEAIESLISS--CPLLES 77 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~-~~~~~~~l~~-L~~L~L~~~~~~~~~l~~ll~~--cp~Le~ 77 (311)
++++|++.-+.. .-.+| .+..+++|++|+|++|.+. .|..+..+++ |+.|+++++.+. .++..+.. +++|+.
T Consensus 331 ~L~~L~L~~N~l-~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~ 406 (636)
T 4eco_A 331 KLGMLECLYNQL-EGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK--YIPNIFDAKSVSVMSA 406 (636)
T ss_dssp TCCEEECCSCCC-EEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS--SCCSCCCTTCSSCEEE
T ss_pred CCCEEeCcCCcC-ccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc--ccchhhhhcccCccCE
Confidence 567777765543 12677 7778888888888888775 5556777888 888888888776 23333333 347888
Q ss_pred ccccccccee-----EE------EeCCCceEEEeece-eeeee---ecCCCCcceeEEEEEEccccchhhcccccchHHH
Q 042404 78 LSLSYFDSLD-----LN------ICAPELKYLYLEGE-FKDIH---LESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLK 142 (311)
Q Consensus 78 L~l~~c~~~~-----~~------i~~~~L~~L~i~~~-~~~~~---i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~ 142 (311)
|++.+|...+ +. ...++|++|.+.++ ...+. +..+++|+.++++.+......... ......
T Consensus 407 L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~----~~~~~~ 482 (636)
T 4eco_A 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS----LKDENE 482 (636)
T ss_dssp EECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSS----SEETTE
T ss_pred EECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHH----hccccc
Confidence 8888875422 11 13457888888875 23221 234788888888766543221100 000000
Q ss_pred HhcCCCcceEEEEeeeEEEEeecCCCCCCCC-ccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEec
Q 042404 143 ILGGVPHLEKLVGYIYFTKYLSIGDDPGRLP-ITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGS 216 (311)
Q Consensus 143 ~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~-~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~ 216 (311)
.+..+++|+.|++..+.+.. .|..+. ..+++|++|.+.. +... .++..+.++++|+.|++..+
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~---N~l~---~ip~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLTK-----LSDDFRATTLPYLVGIDLSY---NSFS---KFPTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp ECTTGGGCCEEECCSSCCCB-----CCGGGSTTTCTTCCEEECCS---SCCS---SCCCGGGGCSSCCEEECCSC
T ss_pred cccccCCccEEECcCCcCCc-----cChhhhhccCCCcCEEECCC---CCCC---CcChhhhcCCCCCEEECCCC
Confidence 12234477788877765442 222222 2466777777732 2211 23444566778888877644
No 66
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.82 E-value=5.7e-10 Score=109.66 Aligned_cols=101 Identities=19% Similarity=0.120 Sum_probs=57.9
Q ss_pred CceEEEEEeCCCeeeec-CCCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHH-HHHhcCccccc
Q 042404 2 DIRELVLELGEGEWFRV-PSCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIE-SLISSCPLLES 77 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~-~ll~~cp~Le~ 77 (311)
+++.|+|..+.. ...+ |..+.++++|++|+|++|.+. .|..+.++++|++|+|+++.+.+.... ..+..+++|++
T Consensus 49 ~L~~LdLs~n~~-~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 49 QLQLLELGSQYT-PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp SCSEEEECTTCC-CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred cCeEEeCCCCCC-ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence 566777765532 1344 555667777777777777654 355566777777777777766542111 12456677777
Q ss_pred cccccccceeEE-----EeCCCceEEEeece
Q 042404 78 LSLSYFDSLDLN-----ICAPELKYLYLEGE 103 (311)
Q Consensus 78 L~l~~c~~~~~~-----i~~~~L~~L~i~~~ 103 (311)
|++.+|....+. -..++|++|.+.++
T Consensus 128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp EEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred EECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 777666532211 12345666666553
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.81 E-value=3.8e-10 Score=97.47 Aligned_cols=198 Identities=15% Similarity=0.070 Sum_probs=118.9
Q ss_pred CceEEEEEeCCCee-eecCCCcccCCCCcEEEccceeeC-CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccc
Q 042404 2 DIRELVLELGEGEW-FRVPSCLFNCRKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLS 79 (311)
Q Consensus 2 ~v~~L~l~~~~~~~-~~lp~~~~~~~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 79 (311)
++++|+|.-..... ...|..+..+++|++|+|++|.+. .|..+..+++|++|+++++.+........+..+++|+.|+
T Consensus 53 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 132 (306)
T 2z66_A 53 QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 132 (306)
T ss_dssp TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEE
T ss_pred cCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEE
Confidence 56777776554321 223555667788888888888764 3444667888888888888775432223466788888888
Q ss_pred ccccccee----EEEeCCCceEEEeece-eee----eeecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcc
Q 042404 80 LSYFDSLD----LNICAPELKYLYLEGE-FKD----IHLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHL 150 (311)
Q Consensus 80 l~~c~~~~----~~i~~~~L~~L~i~~~-~~~----~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l 150 (311)
+.+|.... .....++|+.|.+.++ ... ..+..+++|+.++++.+...+. ....+..+++|
T Consensus 133 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------~~~~~~~l~~L 201 (306)
T 2z66_A 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL-----------SPTAFNSLSSL 201 (306)
T ss_dssp CTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE-----------CTTTTTTCTTC
T ss_pred CCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCc-----------CHHHhcCCCCC
Confidence 88876432 1113467888888875 221 2345778888888766543321 12335677888
Q ss_pred eEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCC-CcceEEEEeccCCc
Q 042404 151 EKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSP-NLKELHISGSSNTL 220 (311)
Q Consensus 151 ~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p-~L~~L~i~~~~~~~ 220 (311)
+.|++..+.+..+. ......+++|++|.+....+.. ..+..+..+| +|+.|++..++..+
T Consensus 202 ~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 202 QVLNMSHNNFFSLD-----TFPYKCLNSLQVLDYSLNHIMT-----SKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CEEECTTSCCSBCC-----SGGGTTCTTCCEEECTTSCCCB-----CSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CEEECCCCccCccC-----hhhccCcccCCEeECCCCCCcc-----cCHHHHHhhhccCCEEEccCCCeec
Confidence 88888776543211 1111246777777773211111 1123345554 78888887766543
No 68
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.80 E-value=4.5e-10 Score=98.24 Aligned_cols=199 Identities=13% Similarity=0.051 Sum_probs=107.0
Q ss_pred CceEEEEEeCCCeeeec-CCCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccc
Q 042404 2 DIRELVLELGEGEWFRV-PSCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESL 78 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 78 (311)
+++.|+|.-+.. ..+ |..+..+++|++|+|++|.+. .|..+.++++|++|+++++.+.. ++. ...++|++|
T Consensus 55 ~l~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~--~~~~~L~~L 128 (332)
T 2ft3_A 55 DTTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPP--NLPSSLVEL 128 (332)
T ss_dssp TCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCS--SCCTTCCEE
T ss_pred CCeEEECCCCcC--CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCc--cccccCCEE
Confidence 567777665543 344 446778888999999888775 34567788888888888887653 111 113677888
Q ss_pred ccccccceeE----EEeCCCceEEEeecee-ee--e---eecCCCCcceeEEEEEEccccchhhc---------ccc-cc
Q 042404 79 SLSYFDSLDL----NICAPELKYLYLEGEF-KD--I---HLESTPLLVSMSIAMYMTDDIAEHFE---------QSS-SC 138 (311)
Q Consensus 79 ~l~~c~~~~~----~i~~~~L~~L~i~~~~-~~--~---~i~~~p~L~~l~l~~~~~~~~~~~~~---------~~~-~~ 138 (311)
++.++....+ ....++|+.|.+.++. .. + .+... +|+.++++.+...+...... ... ..
T Consensus 129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~ 207 (332)
T 2ft3_A 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQA 207 (332)
T ss_dssp ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCC
T ss_pred ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCc
Confidence 7777653221 1234567777776641 11 1 12122 55555554433222110000 000 00
Q ss_pred hHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccC
Q 042404 139 NFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSN 218 (311)
Q Consensus 139 ~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~ 218 (311)
.....+..+++|+.|++..+.+..+. +.. ...+++|++|.+....+. .++..+..+++|+.|++..+..
T Consensus 208 ~~~~~l~~l~~L~~L~L~~N~l~~~~----~~~-~~~l~~L~~L~L~~N~l~------~lp~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 208 IELEDLLRYSKLYRLGLGHNQIRMIE----NGS-LSFLPTLRELHLDNNKLS------RVPAGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp CCTTSSTTCTTCSCCBCCSSCCCCCC----TTG-GGGCTTCCEEECCSSCCC------BCCTTGGGCTTCCEEECCSSCC
T ss_pred cCHHHhcCCCCCCEEECCCCcCCcCC----hhH-hhCCCCCCEEECCCCcCe------ecChhhhcCccCCEEECCCCCC
Confidence 00123456677777777766543211 111 224667777777321111 2333466778888888876543
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.80 E-value=1.9e-09 Score=92.54 Aligned_cols=211 Identities=16% Similarity=0.122 Sum_probs=113.3
Q ss_pred cccCCCCcEEEccceeeC-CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeEE--EeCCCceEE
Q 042404 22 LFNCRKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDLN--ICAPELKYL 98 (311)
Q Consensus 22 ~~~~~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~--i~~~~L~~L 98 (311)
+.++++|+.+++.++.+. .|..+ .+.++.|+|+++.+..- ....+..+++|+.|.+.++....+. ...++|+.|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEE-EGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCcc-CHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEE
Confidence 445666777777766664 33322 35677777777665432 1123556677777777766533311 234567777
Q ss_pred Eeece-eeee--eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCcc
Q 042404 99 YLEGE-FKDI--HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPIT 175 (311)
Q Consensus 99 ~i~~~-~~~~--~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~ 175 (311)
.+.++ ...+ .+..+++|+.++++.+...... ...+..+++|+.|++..+.+..+ +......
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~-----------~~~~~~l~~L~~L~L~~N~l~~~-----~~~~~~~ 146 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP-----------LGALRGLGELQELYLKGNELKTL-----PPGLLTP 146 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCC-----------SSTTTTCTTCCEEECTTSCCCCC-----CTTTTTT
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCcccC-----------HHHHcCCCCCCEEECCCCCCCcc-----Chhhccc
Confidence 77664 2222 2346777777777665543211 12356777888888877755432 2122224
Q ss_pred ccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccCCcccccCCCchhhcccccCcccccceeEEEEEe--ec
Q 042404 176 YNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSNTLAAIEAPDLDFWEKECHADCSFKQLKLVKMTD--IS 253 (311)
Q Consensus 176 f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~v~i~~--~~ 253 (311)
+++|+.|.+....+.. .....+..+++|+.|++..+..... +... ....+|+.+.+.+ +.
T Consensus 147 l~~L~~L~L~~N~l~~-----l~~~~~~~l~~L~~L~L~~N~l~~i-----p~~~--------~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 147 TPKLEKLSLANNNLTE-----LPAGLLNGLENLDTLLLQENSLYTI-----PKGF--------FGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTCCEEECTTSCCSC-----CCTTTTTTCTTCCEEECCSSCCCCC-----CTTT--------TTTCCCSEEECCSCCBC
T ss_pred ccCCCEEECCCCcCCc-----cCHHHhcCcCCCCEEECCCCcCCcc-----Chhh--------cccccCCeEEeCCCCcc
Confidence 6677777773211111 1123456778888888876643311 1111 1234677777665 33
Q ss_pred CCcchHHHHHHHHccC
Q 042404 254 GVPHEMELIKFLLSNS 269 (311)
Q Consensus 254 g~~~~~~l~~~ll~~a 269 (311)
.......+..++-++.
T Consensus 209 C~c~~~~l~~wl~~~~ 224 (290)
T 1p9a_G 209 CNCEILYFRRWLQDNA 224 (290)
T ss_dssp CSGGGHHHHHHHHHTG
T ss_pred CcCccHHHHHHHHhCc
Confidence 3444445555655544
No 70
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.79 E-value=8.5e-11 Score=104.21 Aligned_cols=246 Identities=15% Similarity=0.059 Sum_probs=137.8
Q ss_pred cCCCcccCCCCcEEEccceeeCCC------CCCCCCC-cccEEEeeeeeeChH---HHHHHHhcC-ccccccccccccce
Q 042404 18 VPSCLFNCRKLTRLELFRCEFDPP------LTFTGFP-CLRSLNLHQVLVAPE---AIESLISSC-PLLESLSLSYFDSL 86 (311)
Q Consensus 18 lp~~~~~~~~L~~L~L~~~~l~~~------~~~~~l~-~L~~L~L~~~~~~~~---~l~~ll~~c-p~Le~L~l~~c~~~ 86 (311)
+|..+...++|++|+|++|.+... ..+.+++ +|++|+|++|.+++. .+..++..+ ++|++|++.+|...
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 344444456799999999988632 2345677 899999999988753 455555554 99999999988743
Q ss_pred e-----E---EEeC-CCceEEEeece-eeeee-------ecC-CCCcceeEEEEEEccccchhhcccccchHHHHhcCCC
Q 042404 87 D-----L---NICA-PELKYLYLEGE-FKDIH-------LES-TPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVP 148 (311)
Q Consensus 87 ~-----~---~i~~-~~L~~L~i~~~-~~~~~-------i~~-~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 148 (311)
. + -... ++|++|.+.++ ..... +.. .++|++++++.+...+. ....+...+...+
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-------~~~~l~~~l~~~~ 166 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK-------SSDELIQILAAIP 166 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS-------CHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH-------HHHHHHHHHhcCC
Confidence 2 0 1112 68999999885 22211 212 35899998877654321 1123345556665
Q ss_pred -cceEEEEeeeEEEEeecCCCCCCCCccc-cccceEEEeeeecCCHHHHHHHHHHHhc-CCCcceEEEEeccCCcccccC
Q 042404 149 -HLEKLVGYIYFTKYLSIGDDPGRLPITY-NHLKVIELYQVSFEDMKEILVVIRLITN-SPNLKELHISGSSNTLAAIEA 225 (311)
Q Consensus 149 -~l~~L~l~~~~~~~l~~~~~~~~~~~~f-~~L~~L~l~~~~~~~~~~~~~l~~~l~~-~p~L~~L~i~~~~~~~~~~~~ 225 (311)
+|+.|+++.+.+......... .....+ ++|++|.+....+.. .+...++..+.. +++|++|++..+.....
T Consensus 167 ~~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~~L~~L~Ls~N~i~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~---- 240 (362)
T 3goz_A 167 ANVNSLNLRGNNLASKNCAELA-KFLASIPASVTSLDLSANLLGL-KSYAELAYIFSSIPNHVVSLNLCLNCLHGP---- 240 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHH-HHHHTSCTTCCEEECTTSCGGG-SCHHHHHHHHHHSCTTCCEEECCSSCCCCC----
T ss_pred ccccEeeecCCCCchhhHHHHH-HHHHhCCCCCCEEECCCCCCCh-hHHHHHHHHHhcCCCCceEEECcCCCCCcH----
Confidence 899999887754321100000 011123 488888883322221 234456666666 56999999987653321
Q ss_pred CCchhhcccccCcccccceeEEEEEeecCCcchHHHHHHHHc---cCcccceEEEEec
Q 042404 226 PDLDFWEKECHADCSFKQLKLVKMTDISGVPHEMELIKFLLS---NSPVLEIMSITPC 280 (311)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~Lk~v~i~~~~g~~~~~~l~~~ll~---~a~~Le~l~i~~~ 280 (311)
..+.... .-..+++|+.+.+.+-.-..-..+.+..+.+ +.+.|+.+.+...
T Consensus 241 -~~~~l~~---~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 241 -SLENLKL---LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp -CHHHHHH---TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred -HHHHHHH---HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 1111110 0113577888887764311122233344444 4444444444433
No 71
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.79 E-value=5.8e-10 Score=95.78 Aligned_cols=165 Identities=17% Similarity=0.112 Sum_probs=99.5
Q ss_pred cCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccccee--EEEeCCCceEEEee
Q 042404 24 NCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLD--LNICAPELKYLYLE 101 (311)
Q Consensus 24 ~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~--~~i~~~~L~~L~i~ 101 (311)
.+++|++|++++|.+...+.+..+++|+.|+++++.+.+-. . +..+++|+.|.+.++.... -....++|++|.+.
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 120 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECT
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECC
Confidence 45667777777766654444666777777777777665421 1 5667777777777665322 11123567777766
Q ss_pred ce-eeee-eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCcccccc
Q 042404 102 GE-FKDI-HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHL 179 (311)
Q Consensus 102 ~~-~~~~-~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L 179 (311)
++ ...+ .+..+++|+.++++.+...+ ...+..+++|+.|+++.+.+..+. . ...+++|
T Consensus 121 ~n~i~~~~~l~~l~~L~~L~l~~n~l~~-------------~~~l~~l~~L~~L~L~~N~l~~~~-----~--l~~l~~L 180 (291)
T 1h6t_A 121 HNGISDINGLVHLPQLESLYLGNNKITD-------------ITVLSRLTKLDTLSLEDNQISDIV-----P--LAGLTKL 180 (291)
T ss_dssp TSCCCCCGGGGGCTTCCEEECCSSCCCC-------------CGGGGGCTTCSEEECCSSCCCCCG-----G--GTTCTTC
T ss_pred CCcCCCChhhcCCCCCCEEEccCCcCCc-------------chhhccCCCCCEEEccCCccccch-----h--hcCCCcc
Confidence 64 2222 24577888888887665432 133577888888888877554321 1 2257788
Q ss_pred ceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccC
Q 042404 180 KVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSN 218 (311)
Q Consensus 180 ~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~ 218 (311)
++|.+....+.. +. -+..+++|+.|++..+..
T Consensus 181 ~~L~L~~N~i~~------l~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 181 QNLYLSKNHISD------LR-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CEEECCSSCCCB------CG-GGTTCTTCSEEEEEEEEE
T ss_pred CEEECCCCcCCC------Ch-hhccCCCCCEEECcCCcc
Confidence 888883322222 22 267888999999987653
No 72
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.78 E-value=3.6e-10 Score=108.31 Aligned_cols=35 Identities=14% Similarity=-0.044 Sum_probs=19.3
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEcccee
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCE 37 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~ 37 (311)
++++|++.-+... ...|..+..+++|++|+|++|.
T Consensus 330 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 330 CLEHLNMEDNDIP-GIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp TCCEEECCSCCBC-CCCTTTTTTCTTCCEEECTTCB
T ss_pred CCCEEECCCCccC-CCChhHhccccCCcEEECCCCc
Confidence 5677776544321 1223445566677777766654
No 73
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.77 E-value=2.4e-09 Score=89.85 Aligned_cols=152 Identities=20% Similarity=0.205 Sum_probs=91.9
Q ss_pred eeecCCCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeE----
Q 042404 15 WFRVPSCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDL---- 88 (311)
Q Consensus 15 ~~~lp~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~---- 88 (311)
...+|..+. ++|+.|+|+++.+. .+..+.++++|+.|+|+++.+... ....+..+++|+.|++.++....+
T Consensus 26 l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 102 (251)
T 3m19_A 26 LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQLASLPLGV 102 (251)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcccccChhH
Confidence 356777655 68999999999875 344577899999999999887653 233456789999999988764321
Q ss_pred EEeCCCceEEEeece-eeee---eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEEee
Q 042404 89 NICAPELKYLYLEGE-FKDI---HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYLS 164 (311)
Q Consensus 89 ~i~~~~L~~L~i~~~-~~~~---~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~ 164 (311)
.-..++|++|.+.++ ...+ .+..+++|+.++++.+...+.. ...++.+++|+.|++..+.+..+
T Consensus 103 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------~~~~~~l~~L~~L~L~~N~l~~~- 170 (251)
T 3m19_A 103 FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP-----------AGAFDKLTNLQTLSLSTNQLQSV- 170 (251)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----------TTTTTTCTTCCEEECCSSCCSCC-
T ss_pred hcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC-----------HHHcCcCcCCCEEECCCCcCCcc-
Confidence 113356777777664 2222 1345666666666555433211 12245666677777766644321
Q ss_pred cCCCCCCCCccccccceEEEe
Q 042404 165 IGDDPGRLPITYNHLKVIELY 185 (311)
Q Consensus 165 ~~~~~~~~~~~f~~L~~L~l~ 185 (311)
+......+++|+.|.+.
T Consensus 171 ----~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 171 ----PHGAFDRLGKLQTITLF 187 (251)
T ss_dssp ----CTTTTTTCTTCCEEECC
T ss_pred ----CHHHHhCCCCCCEEEee
Confidence 11111235566666663
No 74
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.76 E-value=2.2e-09 Score=100.70 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=24.0
Q ss_pred cccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccC
Q 042404 175 TYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSN 218 (311)
Q Consensus 175 ~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~ 218 (311)
.+++|+.|.+.. +...++..++..+.++++|+.|++..+..
T Consensus 375 ~l~~L~~L~L~~---N~l~~~~~~~~~~~~l~~L~~L~l~~N~l 415 (562)
T 3a79_B 375 TLKRLQTLILQR---NGLKNFFKVALMTKNMSSLETLDVSLNSL 415 (562)
T ss_dssp SCSSCCEEECCS---SCCCBTTHHHHTTTTCTTCCEEECTTSCC
T ss_pred ccCCCCEEECCC---CCcCCcccchhhhcCCCCCCEEECCCCcC
Confidence 456677666632 22222224455677788888888876543
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.76 E-value=1.1e-09 Score=100.91 Aligned_cols=159 Identities=14% Similarity=0.064 Sum_probs=91.7
Q ss_pred CCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccccee-EEE-eCCCceEEEeece-eeeeeecCCCCcceeEEEE
Q 042404 46 GFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLD-LNI-CAPELKYLYLEGE-FKDIHLESTPLLVSMSIAM 122 (311)
Q Consensus 46 ~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~-~~i-~~~~L~~L~i~~~-~~~~~i~~~p~L~~l~l~~ 122 (311)
.+++|+.|+|+++.+.+- .+..+..+++|+.|+|++|...+ ..+ ..++|++|.++++ +..+. ..|+|+.++++.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~--~~~~L~~L~L~~ 108 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL--VGPSIETLHAAN 108 (487)
T ss_dssp TGGGCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEE--ECTTCCEEECCS
T ss_pred cCCCccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCC--CCCCcCEEECcC
Confidence 567999999999988763 22346789999999999998654 332 3478999999986 33333 458999999877
Q ss_pred EEccccchh-h--------cccc-cchHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCH
Q 042404 123 YMTDDIAEH-F--------EQSS-SCNFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDM 192 (311)
Q Consensus 123 ~~~~~~~~~-~--------~~~~-~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~ 192 (311)
+...+.... + .... .......++.+++|+.|+++.+.+..+.. ..+...+++|++|.+....+...
T Consensus 109 N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF----AELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG----GGGGGGTTTCCEEECTTSCCCEE
T ss_pred CcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh----HHHhhhCCcccEEecCCCccccc
Confidence 654332110 0 0000 00112223455666666666654433211 11222356677776632111111
Q ss_pred HHHHHHHHHHhcCCCcceEEEEeccC
Q 042404 193 KEILVVIRLITNSPNLKELHISGSSN 218 (311)
Q Consensus 193 ~~~~~l~~~l~~~p~L~~L~i~~~~~ 218 (311)
+ -...+|+|+.|++..+..
T Consensus 185 ------~-~~~~l~~L~~L~Ls~N~l 203 (487)
T 3oja_A 185 ------K-GQVVFAKLKTLDLSSNKL 203 (487)
T ss_dssp ------E-CCCCCTTCCEEECCSSCC
T ss_pred ------c-ccccCCCCCEEECCCCCC
Confidence 1 122467777777776544
No 76
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.76 E-value=6e-10 Score=96.87 Aligned_cols=230 Identities=15% Similarity=0.152 Sum_probs=150.7
Q ss_pred CceEEEEEeCCCeeeecC-CCcccCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccc
Q 042404 2 DIRELVLELGEGEWFRVP-SCLFNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSL 80 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l 80 (311)
++++|+|.-+.. ..+| ..+..+++|++|+|++|.+.....+..+++|++|+++++.+.+- ..+++|++|.+
T Consensus 35 ~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l------~~~~~L~~L~l 106 (317)
T 3o53_A 35 NVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL------LVGPSIETLHA 106 (317)
T ss_dssp GCSEEECTTSCC--CCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEE------EECTTCCEEEC
T ss_pred CCCEEECcCCcc--CcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccc------cCCCCcCEEEC
Confidence 577787765543 2344 46778999999999999876322378899999999999987652 25699999999
Q ss_pred cccccee-EEEeCCCceEEEeece-ee---eeeecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEE
Q 042404 81 SYFDSLD-LNICAPELKYLYLEGE-FK---DIHLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVG 155 (311)
Q Consensus 81 ~~c~~~~-~~i~~~~L~~L~i~~~-~~---~~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l 155 (311)
.++.... .....++|+.|.+.++ .. ...+..+++|+.++++.+...+. ....+...+++|+.|++
T Consensus 107 ~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----------~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 107 ANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV----------NFAELAASSDTLEHLNL 176 (317)
T ss_dssp CSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE----------EGGGGGGGTTTCCEEEC
T ss_pred CCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc----------cHHHHhhccCcCCEEEC
Confidence 9987655 3334578999999986 22 23456789999999877654321 11333457899999999
Q ss_pred eeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccCCcccccCCCchhhcccc
Q 042404 156 YIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSNTLAAIEAPDLDFWEKEC 235 (311)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~ 235 (311)
+.+.+..+.. .. .+++|++|.+....+. .++..+..+++|+.|++..+..... + ..
T Consensus 177 ~~N~l~~~~~------~~-~l~~L~~L~Ls~N~l~------~l~~~~~~l~~L~~L~L~~N~l~~l-----~-~~----- 232 (317)
T 3o53_A 177 QYNFIYDVKG------QV-VFAKLKTLDLSSNKLA------FMGPEFQSAAGVTWISLRNNKLVLI-----E-KA----- 232 (317)
T ss_dssp TTSCCCEEEC------CC-CCTTCCEEECCSSCCC------EECGGGGGGTTCSEEECTTSCCCEE-----C-TT-----
T ss_pred CCCcCccccc------cc-ccccCCEEECCCCcCC------cchhhhcccCcccEEECcCCcccch-----h-hH-----
Confidence 9887665421 11 3788999998432222 2222367889999999987654321 0 00
Q ss_pred cCcccccceeEEEEEeecCCcchHHHHHHHHccCcccceEEEE
Q 042404 236 HADCSFKQLKLVKMTDISGVPHEMELIKFLLSNSPVLEIMSIT 278 (311)
Q Consensus 236 ~~~~~~~~Lk~v~i~~~~g~~~~~~l~~~ll~~a~~Le~l~i~ 278 (311)
. ..+++|+.+.+.+ ....-..+...+.+.+.|+.+.+.
T Consensus 233 -~-~~l~~L~~L~l~~---N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 233 -L-RFSQNLEHFDLRG---NGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp -C-CCCTTCCEEECTT---CCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred -h-hcCCCCCEEEccC---CCccCcCHHHHHhccccceEEECC
Confidence 1 1246777776554 333322344445566666655544
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.74 E-value=4.4e-10 Score=97.49 Aligned_cols=183 Identities=20% Similarity=0.108 Sum_probs=111.2
Q ss_pred eecCCCcc-------cCCCCcEEEccceeeC--CCCCC--CCCCcccEEEeeeeeeChH--HHHHHHh-cCccccccccc
Q 042404 16 FRVPSCLF-------NCRKLTRLELFRCEFD--PPLTF--TGFPCLRSLNLHQVLVAPE--AIESLIS-SCPLLESLSLS 81 (311)
Q Consensus 16 ~~lp~~~~-------~~~~L~~L~L~~~~l~--~~~~~--~~l~~L~~L~L~~~~~~~~--~l~~ll~-~cp~Le~L~l~ 81 (311)
..+|..++ .+++|++|+|++|.+. .|..+ ..+++|+.|+|+++.+.+. .+..+.. .+++|++|++.
T Consensus 78 ~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~ 157 (312)
T 1wwl_A 78 ARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157 (312)
T ss_dssp EECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEE
T ss_pred CCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEee
Confidence 45666555 6889999999999875 35544 7889999999999987653 2322211 13899999999
Q ss_pred ccccee----EEEeCCCceEEEeecee-e-------eeeecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCc
Q 042404 82 YFDSLD----LNICAPELKYLYLEGEF-K-------DIHLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPH 149 (311)
Q Consensus 82 ~c~~~~----~~i~~~~L~~L~i~~~~-~-------~~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 149 (311)
++.... .....++|++|.++++. . .+.+..+++|++++++.+...+.. .....++..+++
T Consensus 158 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~~~~~l~~ 229 (312)
T 1wwl_A 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS--------GVCSALAAARVQ 229 (312)
T ss_dssp SCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH--------HHHHHHHHTTCC
T ss_pred CCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH--------HHHHHHHhcCCC
Confidence 886433 12245688888888752 1 112257888888888766543110 112344567788
Q ss_pred ceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccC
Q 042404 150 LEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSN 218 (311)
Q Consensus 150 l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~ 218 (311)
|+.|+++.+.+.... +......+++|++|.+....+. .++..+. ++|+.|++..+..
T Consensus 230 L~~L~Ls~N~l~~~~----~~~~~~~l~~L~~L~Ls~N~l~------~ip~~~~--~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 230 LQGLDLSHNSLRDAA----GAPSCDWPSQLNSLNLSFTGLK------QVPKGLP--AKLSVLDLSYNRL 286 (312)
T ss_dssp CSEEECTTSCCCSSC----CCSCCCCCTTCCEEECTTSCCS------SCCSSCC--SEEEEEECCSSCC
T ss_pred CCEEECCCCcCCccc----chhhhhhcCCCCEEECCCCccC------hhhhhcc--CCceEEECCCCCC
Confidence 888888877543211 1111123567888877321111 1111121 6788888876543
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.74 E-value=1.3e-10 Score=100.90 Aligned_cols=190 Identities=21% Similarity=0.155 Sum_probs=128.8
Q ss_pred CceEEEEEeCCCeeeecCCCc--ccCCCCcEEEccceeeCC-CCCCCCC-----CcccEEEeeeeeeChHHHHHHHhcCc
Q 042404 2 DIRELVLELGEGEWFRVPSCL--FNCRKLTRLELFRCEFDP-PLTFTGF-----PCLRSLNLHQVLVAPEAIESLISSCP 73 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~--~~~~~L~~L~L~~~~l~~-~~~~~~l-----~~L~~L~L~~~~~~~~~l~~ll~~cp 73 (311)
++++|+|.-+.. ...+|..+ ..+++|++|+|++|.+.. |..+..+ ++|+.|+|+++.+... ....+..++
T Consensus 96 ~L~~L~L~~n~l-~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~-~~~~~~~l~ 173 (312)
T 1wwl_A 96 GLQELTLENLEV-TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF-SCEQVRVFP 173 (312)
T ss_dssp CCCEEEEEEEBC-BSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCC-CTTTCCCCS
T ss_pred CccEEEccCCcc-cchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccc-hHHHhccCC
Confidence 678899877654 13577776 788999999999998863 3334444 8999999999987653 223467899
Q ss_pred ccccccccccccee-------EE-EeCCCceEEEeece-ee---ee---eecCCCCcceeEEEEEEccccchhhcccccc
Q 042404 74 LLESLSLSYFDSLD-------LN-ICAPELKYLYLEGE-FK---DI---HLESTPLLVSMSIAMYMTDDIAEHFEQSSSC 138 (311)
Q Consensus 74 ~Le~L~l~~c~~~~-------~~-i~~~~L~~L~i~~~-~~---~~---~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~ 138 (311)
+|++|++.++...+ +. ...++|++|.+.++ .. .+ .+..+++|+.++++.+...+..
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--------- 244 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA--------- 244 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC---------
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc---------
Confidence 99999999987322 11 34579999999986 22 11 1236689999999876543210
Q ss_pred hHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccC
Q 042404 139 NFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSN 218 (311)
Q Consensus 139 ~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~ 218 (311)
....+..+++|+.|+++.+.+.. .|..+ +++|++|.+.. +... .++. +..+|+|+.|++..++.
T Consensus 245 -~~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~---~~~L~~L~Ls~---N~l~---~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 245 -GAPSCDWPSQLNSLNLSFTGLKQ-----VPKGL---PAKLSVLDLSY---NRLD---RNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp -CCSCCCCCTTCCEEECTTSCCSS-----CCSSC---CSEEEEEECCS---SCCC---SCCC-TTTSCEEEEEECTTCTT
T ss_pred -chhhhhhcCCCCEEECCCCccCh-----hhhhc---cCCceEEECCC---CCCC---CChh-HhhCCCCCEEeccCCCC
Confidence 01224567899999999886542 33322 27889888833 2222 2233 67889999999986643
No 79
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.73 E-value=7.9e-09 Score=83.30 Aligned_cols=143 Identities=17% Similarity=0.133 Sum_probs=106.3
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLS 81 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 81 (311)
++++|++..+.. ..+| .+..+++|++|++++|.+..++.+..+++|++|+++++.+.+.... .++.+++|+.|++.
T Consensus 45 ~L~~L~l~~n~i--~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINV--TDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCC--SCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSC-CCTTCTTCCEEECC
T ss_pred CccEEeccCCCc--cChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccCh-hhcCCCCCCEEEec
Confidence 578888876654 3667 6888999999999999887766788899999999999988764333 36789999999999
Q ss_pred ccccee----EEEeCCCceEEEeecee--eee-eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEE
Q 042404 82 YFDSLD----LNICAPELKYLYLEGEF--KDI-HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLV 154 (311)
Q Consensus 82 ~c~~~~----~~i~~~~L~~L~i~~~~--~~~-~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~ 154 (311)
+|.... .....++|++|.+.++. ..+ .+..+|+|+.++++.+...+. . .+..+++|+.|+
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~------------~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY------------R-GIEDFPKLNQLY 187 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCC------------T-TGGGCSSCCEEE
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcCh------------H-HhccCCCCCEEE
Confidence 986432 11245789999998862 222 356889999999877654321 1 357889999999
Q ss_pred EeeeEEE
Q 042404 155 GYIYFTK 161 (311)
Q Consensus 155 l~~~~~~ 161 (311)
+.++.+.
T Consensus 188 l~~N~i~ 194 (197)
T 4ezg_A 188 AFSQTIG 194 (197)
T ss_dssp ECBC---
T ss_pred eeCcccC
Confidence 9988653
No 80
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.72 E-value=2.9e-08 Score=92.02 Aligned_cols=81 Identities=12% Similarity=0.029 Sum_probs=51.9
Q ss_pred ccCCCCcEEEccceeeCC--CCCCCCCCcccEEEeeeeeeCh-HHHHHHHhcCcccccccccccccee-----EEEeCCC
Q 042404 23 FNCRKLTRLELFRCEFDP--PLTFTGFPCLRSLNLHQVLVAP-EAIESLISSCPLLESLSLSYFDSLD-----LNICAPE 94 (311)
Q Consensus 23 ~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l~~c~~~~-----~~i~~~~ 94 (311)
..+++|++|+|++|.+.. |..+..+++|+.|+++++.+.+ ..++..+..+++|+.|++++|.... .....++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 456777788887777653 5566677778888887777764 2355566777788888777765322 1122345
Q ss_pred ceEEEeece
Q 042404 95 LKYLYLEGE 103 (311)
Q Consensus 95 L~~L~i~~~ 103 (311)
|+.|.+.++
T Consensus 401 L~~L~Ls~N 409 (520)
T 2z7x_B 401 LLSLNMSSN 409 (520)
T ss_dssp CCEEECCSS
T ss_pred CCEEECcCC
Confidence 666666554
No 81
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.72 E-value=1.6e-09 Score=103.81 Aligned_cols=122 Identities=16% Similarity=0.046 Sum_probs=76.4
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeC--CC-CCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFD--PP-LTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESL 78 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~--~~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 78 (311)
.+++|++.-+... ...|..+..+++|++|+|++|.+. .| ..+.++++|+.|+++++.+... ....+..+|+|+.|
T Consensus 382 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~L~~L 459 (680)
T 1ziw_A 382 PLHILNLTKNKIS-KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL-TRNSFALVPSLQRL 459 (680)
T ss_dssp CCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEEC-CTTTTTTCTTCCEE
T ss_pred cCceEECCCCCCC-eEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCccee-ChhhhhcCcccccc
Confidence 4566666544331 234566778889999999988763 22 4567888899999988876432 11224568888888
Q ss_pred cccccccee------EEEeCCCceEEEeece-eeee---eecCCCCcceeEEEEEEc
Q 042404 79 SLSYFDSLD------LNICAPELKYLYLEGE-FKDI---HLESTPLLVSMSIAMYMT 125 (311)
Q Consensus 79 ~l~~c~~~~------~~i~~~~L~~L~i~~~-~~~~---~i~~~p~L~~l~l~~~~~ 125 (311)
.+.+|..-. .....++|+.|.+.++ ...+ .+..+++|+.++++.+..
T Consensus 460 ~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 516 (680)
T 1ziw_A 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516 (680)
T ss_dssp ECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred hhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCc
Confidence 887765321 1112357777777764 2222 244677777777766543
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.71 E-value=1.1e-09 Score=94.09 Aligned_cols=191 Identities=19% Similarity=0.118 Sum_probs=120.7
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLS 79 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 79 (311)
+++++++.-. ....+|..+. +++++|+|++|.+. .+..+.++++|+.|+|+++.++.-.. ...+++|+.|+
T Consensus 11 ~l~~l~~~~~--~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~ 83 (290)
T 1p9a_G 11 SHLEVNCDKR--NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLD 83 (290)
T ss_dssp TCCEEECTTS--CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEE
T ss_pred CccEEECCCC--CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEE
Confidence 3455554322 2346776654 68899999988875 34457788999999999887765211 15788899999
Q ss_pred cccccceeE---EEeCCCceEEEeece-eeee---eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceE
Q 042404 80 LSYFDSLDL---NICAPELKYLYLEGE-FKDI---HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEK 152 (311)
Q Consensus 80 l~~c~~~~~---~i~~~~L~~L~i~~~-~~~~---~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~ 152 (311)
+.++....+ ....++|++|.+.++ ...+ .+..+++|+.++++.+...... ...+..+++|+.
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~-----------~~~~~~l~~L~~ 152 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP-----------PGLLTPTPKLEK 152 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-----------TTTTTTCTTCCE
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC-----------hhhcccccCCCE
Confidence 988764331 123468888888875 2322 3557888888888766543211 233567788888
Q ss_pred EEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccCCcc
Q 042404 153 LVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSNTLA 221 (311)
Q Consensus 153 L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~~~~ 221 (311)
|++..+.++. .+......+++|++|.+....+. .++.-+...+.|+.|++..++..+.
T Consensus 153 L~L~~N~l~~-----l~~~~~~~l~~L~~L~L~~N~l~------~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 153 LSLANNNLTE-----LPAGLLNGLENLDTLLLQENSLY------TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp EECTTSCCSC-----CCTTTTTTCTTCCEEECCSSCCC------CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred EECCCCcCCc-----cCHHHhcCcCCCCEEECCCCcCC------ccChhhcccccCCeEEeCCCCccCc
Confidence 8888776543 22222234677888887322111 2333445567888888887776543
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.71 E-value=4.6e-09 Score=90.15 Aligned_cols=159 Identities=24% Similarity=0.250 Sum_probs=113.6
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLS 81 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 81 (311)
++++|++.-+.. ..+| .+..+++|++|+|++|.+...+.+.++++|+.|+++++.+.+- +. +..+++|++|++.
T Consensus 47 ~L~~L~l~~~~i--~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSDI--KSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL--SS-LKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCG--GG-GTTCTTCCEEECT
T ss_pred cccEEEccCCCc--ccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCC--hh-hccCCCCCEEECC
Confidence 466776654432 3444 4788999999999999887433478899999999999988662 22 7789999999999
Q ss_pred cccceeE--EEeCCCceEEEeece-eeee-eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEee
Q 042404 82 YFDSLDL--NICAPELKYLYLEGE-FKDI-HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYI 157 (311)
Q Consensus 82 ~c~~~~~--~i~~~~L~~L~i~~~-~~~~-~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~ 157 (311)
+|....+ ....++|+.|.+.++ ...+ .+..+++|+.++++.+...+. .. +..+++|+.|+++.
T Consensus 121 ~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~------------~~-l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 121 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI------------VP-LAGLTKLQNLYLSK 187 (291)
T ss_dssp TSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC------------GG-GTTCTTCCEEECCS
T ss_pred CCcCCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccc------------hh-hcCCCccCEEECCC
Confidence 8864331 123478999999886 2332 355789999999887654321 22 67889999999998
Q ss_pred eEEEEeecCCCCCCCCccccccceEEEee
Q 042404 158 YFTKYLSIGDDPGRLPITYNHLKVIELYQ 186 (311)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~f~~L~~L~l~~ 186 (311)
+.+..+ +. + ..+++|+.|.+..
T Consensus 188 N~i~~l-----~~-l-~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 188 NHISDL-----RA-L-AGLKNLDVLELFS 209 (291)
T ss_dssp SCCCBC-----GG-G-TTCTTCSEEEEEE
T ss_pred CcCCCC-----hh-h-ccCCCCCEEECcC
Confidence 876543 21 2 2578889888854
No 84
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.71 E-value=1.6e-09 Score=102.17 Aligned_cols=164 Identities=19% Similarity=0.155 Sum_probs=87.8
Q ss_pred cCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeE--EEeCCCceEEEee
Q 042404 24 NCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDL--NICAPELKYLYLE 101 (311)
Q Consensus 24 ~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~--~i~~~~L~~L~i~ 101 (311)
.+++|+.|+|.++.+...+.+..+++|+.|+|+++.+.+-.. +..+++|+.|.|.+|....+ ....++|+.|.+.
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLE 117 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECT
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCCChhhccCCCCCEEEec
Confidence 345666666666665544445566666666666665544211 55666666666666543221 1123456666666
Q ss_pred ce-eeee-eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCcccccc
Q 042404 102 GE-FKDI-HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHL 179 (311)
Q Consensus 102 ~~-~~~~-~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L 179 (311)
++ +..+ .+..+++|+.++++.+...+ ...+..+++|+.|+|+.+.+..+. + ...+++|
T Consensus 118 ~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-------------l~~l~~l~~L~~L~Ls~N~l~~~~----~---l~~l~~L 177 (605)
T 1m9s_A 118 HNGISDINGLVHLPQLESLYLGNNKITD-------------ITVLSRLTKLDTLSLEDNQISDIV----P---LAGLTKL 177 (605)
T ss_dssp TSCCCCCGGGGGCTTCSEEECCSSCCCC-------------CGGGGSCTTCSEEECCSSCCCCCG----G---GTTCTTC
T ss_pred CCCCCCCccccCCCccCEEECCCCccCC-------------chhhcccCCCCEEECcCCcCCCch----h---hccCCCC
Confidence 54 2222 24466777777776554332 123566777777777766443211 1 1245667
Q ss_pred ceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEecc
Q 042404 180 KVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSS 217 (311)
Q Consensus 180 ~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~ 217 (311)
++|.+....+.. + ..+..+++|+.|++..+.
T Consensus 178 ~~L~Ls~N~i~~------l-~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 178 QNLYLSKNHISD------L-RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CEEECCSSCCCB------C-GGGTTCTTCSEEECCSEE
T ss_pred CEEECcCCCCCC------C-hHHccCCCCCEEEccCCc
Confidence 777763222221 1 125667777777776553
No 85
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.70 E-value=2.1e-08 Score=92.97 Aligned_cols=128 Identities=19% Similarity=0.109 Sum_probs=91.5
Q ss_pred eeecCCCcccCCCCcEEEccceeeCC--CCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeEEE-e
Q 042404 15 WFRVPSCLFNCRKLTRLELFRCEFDP--PLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDLNI-C 91 (311)
Q Consensus 15 ~~~lp~~~~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~i-~ 91 (311)
...+|..++ ++|++|+|++|.+.. |..+.++++|++|+|+++.+.+. .+..+.++++|++|+++++....+.. .
T Consensus 12 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~~ 88 (520)
T 2z7x_B 12 LIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLVKISCHP 88 (520)
T ss_dssp CSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCCEEECCC
T ss_pred ccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCceeecCccc
Confidence 357887776 899999999998863 23577899999999999987653 23346789999999999986544211 5
Q ss_pred CCCceEEEeece-eee----eeecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcc--eEEEEeeeE
Q 042404 92 APELKYLYLEGE-FKD----IHLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHL--EKLVGYIYF 159 (311)
Q Consensus 92 ~~~L~~L~i~~~-~~~----~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l--~~L~l~~~~ 159 (311)
.++|++|.+.++ ... -.+..+++|++++++.+...+ ..+..++++ +.|++..+.
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--------------~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--------------SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--------------GGGGGGTTSCEEEEEEEECT
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--------------hhccccccceeeEEEeeccc
Confidence 678999999986 222 245688999999998865431 113444555 777776653
No 86
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.67 E-value=9e-10 Score=96.31 Aligned_cols=196 Identities=15% Similarity=0.091 Sum_probs=109.8
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeCC-CCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFDP-PLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSL 80 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l 80 (311)
++++|+|.-+... ...|..+..+++|++|+|++|.+.. |..+ +++|++|+++++.+..- ....+.++++|+.|++
T Consensus 79 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~--~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l 154 (332)
T 2ft3_A 79 HLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKV-PKGVFSGLRNMNCIEM 154 (332)
T ss_dssp TCCEEECCSSCCC-EECGGGSTTCTTCCEEECCSSCCCSCCSSC--CTTCCEEECCSSCCCCC-CSGGGSSCSSCCEEEC
T ss_pred CCcEEECCCCccC-ccCHhHhhCcCCCCEEECCCCcCCccCccc--cccCCEEECCCCccCcc-CHhHhCCCccCCEEEC
Confidence 5677776655431 2235567777888888888777652 3222 26777777777665432 1122456677777776
Q ss_pred ccccce-------------------------eEE-EeCCCceEEEeece-eeee---eecCCCCcceeEEEEEEccccch
Q 042404 81 SYFDSL-------------------------DLN-ICAPELKYLYLEGE-FKDI---HLESTPLLVSMSIAMYMTDDIAE 130 (311)
Q Consensus 81 ~~c~~~-------------------------~~~-i~~~~L~~L~i~~~-~~~~---~i~~~p~L~~l~l~~~~~~~~~~ 130 (311)
.++... .+. .-.++|+.|.+.++ ...+ .+..+++|+.++++.+...+..
T Consensus 155 ~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~- 233 (332)
T 2ft3_A 155 GGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE- 233 (332)
T ss_dssp CSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC-
T ss_pred CCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC-
Confidence 665421 100 00145666666664 2222 2456778888887765543211
Q ss_pred hhcccccchHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHH--HHhcCCCc
Q 042404 131 HFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIR--LITNSPNL 208 (311)
Q Consensus 131 ~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~--~l~~~p~L 208 (311)
...+..+++|+.|++..+.+.. .|..+. .+++|+.|.+....+... +...+.. .....+.|
T Consensus 234 ----------~~~~~~l~~L~~L~L~~N~l~~-----lp~~l~-~l~~L~~L~l~~N~l~~~-~~~~~~~~~~~~~~~~l 296 (332)
T 2ft3_A 234 ----------NGSLSFLPTLRELHLDNNKLSR-----VPAGLP-DLKLLQVVYLHTNNITKV-GVNDFCPVGFGVKRAYY 296 (332)
T ss_dssp ----------TTGGGGCTTCCEEECCSSCCCB-----CCTTGG-GCTTCCEEECCSSCCCBC-CTTSSSCSSCCSSSCCB
T ss_pred ----------hhHhhCCCCCCEEECCCCcCee-----cChhhh-cCccCCEEECCCCCCCcc-ChhHccccccccccccc
Confidence 2235788999999999886542 333333 578899998843222211 0001100 01125788
Q ss_pred ceEEEEeccCC
Q 042404 209 KELHISGSSNT 219 (311)
Q Consensus 209 ~~L~i~~~~~~ 219 (311)
+.|++..++..
T Consensus 297 ~~L~l~~N~~~ 307 (332)
T 2ft3_A 297 NGISLFNNPVP 307 (332)
T ss_dssp SEEECCSSSSC
T ss_pred cceEeecCccc
Confidence 99999876543
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.67 E-value=1.4e-10 Score=102.74 Aligned_cols=206 Identities=15% Similarity=0.134 Sum_probs=132.9
Q ss_pred CceEEEEEeCCCeeeecC-----CCcccCC-CCcEEEccceeeCC--CCCCCC-----CCcccEEEeeeeeeCh---HHH
Q 042404 2 DIRELVLELGEGEWFRVP-----SCLFNCR-KLTRLELFRCEFDP--PLTFTG-----FPCLRSLNLHQVLVAP---EAI 65 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp-----~~~~~~~-~L~~L~L~~~~l~~--~~~~~~-----l~~L~~L~L~~~~~~~---~~l 65 (311)
++++|+|..+.. ...+ ..+..++ +|++|+|++|.+.. +..+.. +++|++|+|++|.+++ ..+
T Consensus 23 ~L~~L~Ls~n~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 23 GVTSLDLSLNNL--YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TCCEEECTTSCG--GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CceEEEccCCCC--ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 578888765542 2222 4455677 89999999998864 222333 3899999999999875 345
Q ss_pred HHHHhcC-ccccccccccccceeEE-------Ee--CCCceEEEeece-eeee-------eecCCC-CcceeEEEEEEcc
Q 042404 66 ESLISSC-PLLESLSLSYFDSLDLN-------IC--APELKYLYLEGE-FKDI-------HLESTP-LLVSMSIAMYMTD 126 (311)
Q Consensus 66 ~~ll~~c-p~Le~L~l~~c~~~~~~-------i~--~~~L~~L~i~~~-~~~~-------~i~~~p-~L~~l~l~~~~~~ 126 (311)
...+..+ ++|+.|++.+|...... +. .++|++|.++++ .... .+...+ +|++++++.+...
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 5667777 89999999998743211 11 259999999986 2211 122444 9999999877543
Q ss_pred ccchhhcccccchHHHHhcCCC-cceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcC
Q 042404 127 DIAEHFEQSSSCNFLKILGGVP-HLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNS 205 (311)
Q Consensus 127 ~~~~~~~~~~~~~~~~~l~~l~-~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~ 205 (311)
+. ....+...+...+ +|+.|+++.+.+........+..+....++|++|.+....+.. .+...+...++.+
T Consensus 181 ~~-------~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~~~~l 252 (362)
T 3goz_A 181 SK-------NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG-PSLENLKLLKDSL 252 (362)
T ss_dssp GS-------CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC-CCHHHHHHTTTTT
T ss_pred hh-------hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc-HHHHHHHHHHhcC
Confidence 21 1123455666774 9999999987643211100111111113589999994432332 3445777888999
Q ss_pred CCcceEEEEecc
Q 042404 206 PNLKELHISGSS 217 (311)
Q Consensus 206 p~L~~L~i~~~~ 217 (311)
++|+.|++..+.
T Consensus 253 ~~L~~L~L~~n~ 264 (362)
T 3goz_A 253 KHLQTVYLDYDI 264 (362)
T ss_dssp TTCSEEEEEHHH
T ss_pred CCccEEEeccCC
Confidence 999999999875
No 88
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.67 E-value=6.6e-09 Score=98.03 Aligned_cols=141 Identities=25% Similarity=0.244 Sum_probs=80.5
Q ss_pred CcccCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeE--EEeCCCceEE
Q 042404 21 CLFNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDL--NICAPELKYL 98 (311)
Q Consensus 21 ~~~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~--~i~~~~L~~L 98 (311)
.+..+++|+.|+|++|.+...+.+..+++|+.|+|+++.+.+- + .+..+++|+.|+|.+|....+ ....++|+.|
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L 136 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 136 (605)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEE
T ss_pred HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCC--h-hhccCCCCCEEEecCCCCCCCccccCCCccCEE
Confidence 4666777777777777665333366677777777777766542 1 255677777777776653221 1123567777
Q ss_pred Eeece-eeee-eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCccc
Q 042404 99 YLEGE-FKDI-HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITY 176 (311)
Q Consensus 99 ~i~~~-~~~~-~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f 176 (311)
.+.++ ...+ .+..+++|+.|+++.+...+. .. +..+++|+.|+|+.+.+..+ + .+ ..+
T Consensus 137 ~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~------------~~-l~~l~~L~~L~Ls~N~i~~l-----~-~l-~~l 196 (605)
T 1m9s_A 137 YLGNNKITDITVLSRLTKLDTLSLEDNQISDI------------VP-LAGLTKLQNLYLSKNHISDL-----R-AL-AGL 196 (605)
T ss_dssp ECCSSCCCCCGGGGSCTTCSEEECCSSCCCCC------------GG-GTTCTTCCEEECCSSCCCBC-----G-GG-TTC
T ss_pred ECCCCccCCchhhcccCCCCEEECcCCcCCCc------------hh-hccCCCCCEEECcCCCCCCC-----h-HH-ccC
Confidence 77664 2222 244667777777665543321 11 45666677777666654432 1 11 135
Q ss_pred cccceEEE
Q 042404 177 NHLKVIEL 184 (311)
Q Consensus 177 ~~L~~L~l 184 (311)
++|+.|.+
T Consensus 197 ~~L~~L~L 204 (605)
T 1m9s_A 197 KNLDVLEL 204 (605)
T ss_dssp TTCSEEEC
T ss_pred CCCCEEEc
Confidence 66666666
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.66 E-value=2.8e-09 Score=89.35 Aligned_cols=144 Identities=17% Similarity=0.126 Sum_probs=103.5
Q ss_pred CceEEEEEeCCCeeeecC-CCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccc
Q 042404 2 DIRELVLELGEGEWFRVP-SCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESL 78 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 78 (311)
++++|+|.-... ..++ ..+..+++|++|+|++|.+. .+..+..+++|+.|+|+++.+..- ....+..+++|+.|
T Consensus 36 ~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 112 (251)
T 3m19_A 36 DTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL-PLGVFDHLTQLDKL 112 (251)
T ss_dssp TCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEE
T ss_pred CCCEEEccCCCc--CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc-ChhHhcccCCCCEE
Confidence 456666654433 2344 45778999999999999886 344478899999999999988753 22346789999999
Q ss_pred ccccccceeE----EEeCCCceEEEeece-eeee---eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcc
Q 042404 79 SLSYFDSLDL----NICAPELKYLYLEGE-FKDI---HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHL 150 (311)
Q Consensus 79 ~l~~c~~~~~----~i~~~~L~~L~i~~~-~~~~---~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l 150 (311)
++.++....+ ....++|+.|.+.++ ...+ .+..+++|+.++++.+...+.. ...+..+++|
T Consensus 113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----------~~~~~~l~~L 181 (251)
T 3m19_A 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP-----------HGAFDRLGKL 181 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-----------TTTTTTCTTC
T ss_pred EcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC-----------HHHHhCCCCC
Confidence 9999864331 123578999999986 3332 3557899999999887654321 2346788999
Q ss_pred eEEEEeeeE
Q 042404 151 EKLVGYIYF 159 (311)
Q Consensus 151 ~~L~l~~~~ 159 (311)
+.|++.++.
T Consensus 182 ~~L~l~~N~ 190 (251)
T 3m19_A 182 QTITLFGNQ 190 (251)
T ss_dssp CEEECCSCC
T ss_pred CEEEeeCCc
Confidence 999998764
No 90
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.66 E-value=6.5e-08 Score=91.46 Aligned_cols=109 Identities=16% Similarity=0.055 Sum_probs=69.5
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLS 81 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 81 (311)
++++|+|.-+.. ..+|. .+++|++|+|++|.+...+. .+++|+.|+++++.+..- + ...++|+.|++.
T Consensus 62 ~L~~L~L~~N~l--~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l--~---~~l~~L~~L~L~ 129 (622)
T 3g06_A 62 HITTLVIPDNNL--TSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHL--P---ALPSGLCKLWIF 129 (622)
T ss_dssp TCSEEEECSCCC--SCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCC--C---CCCTTCCEEECC
T ss_pred CCcEEEecCCCC--CCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCC--C---CCCCCcCEEECC
Confidence 577888766643 35666 46889999999988763332 678899999988876541 1 156778888888
Q ss_pred cccceeEEEeCCCceEEEeece-eeeeeecCCCCcceeEEEEE
Q 042404 82 YFDSLDLNICAPELKYLYLEGE-FKDIHLESTPLLVSMSIAMY 123 (311)
Q Consensus 82 ~c~~~~~~i~~~~L~~L~i~~~-~~~~~i~~~p~L~~l~l~~~ 123 (311)
+|....+....++|++|.++++ ...+. ...++|+.+.++.+
T Consensus 130 ~N~l~~lp~~l~~L~~L~Ls~N~l~~l~-~~~~~L~~L~L~~N 171 (622)
T 3g06_A 130 GNQLTSLPVLPPGLQELSVSDNQLASLP-ALPSELCKLWAYNN 171 (622)
T ss_dssp SSCCSCCCCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSS
T ss_pred CCCCCcCCCCCCCCCEEECcCCcCCCcC-CccCCCCEEECCCC
Confidence 7753333323477888877775 22221 13445555555443
No 91
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.64 E-value=6.6e-08 Score=90.57 Aligned_cols=107 Identities=17% Similarity=0.050 Sum_probs=81.1
Q ss_pred eeecCCCcccCCCCcEEEccceeeCC--CCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccccee--EEE
Q 042404 15 WFRVPSCLFNCRKLTRLELFRCEFDP--PLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLD--LNI 90 (311)
Q Consensus 15 ~~~lp~~~~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~--~~i 90 (311)
...+|..+. ++|++|+|++|.+.. +..+.++++|++|+|+++.+++- .+..+.++++|++|++.++.... ..
T Consensus 43 L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~- 118 (562)
T 3a79_B 43 LTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQNISCC- 118 (562)
T ss_dssp CCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCCEECSC-
T ss_pred CccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCCccCcc-
Confidence 346787665 899999999998863 34688999999999999987653 22346789999999999987443 22
Q ss_pred eCCCceEEEeece-eeee----eecCCCCcceeEEEEEEc
Q 042404 91 CAPELKYLYLEGE-FKDI----HLESTPLLVSMSIAMYMT 125 (311)
Q Consensus 91 ~~~~L~~L~i~~~-~~~~----~i~~~p~L~~l~l~~~~~ 125 (311)
..++|++|.+.++ ...+ .+..+++|+.++++.+..
T Consensus 119 ~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 119 PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc
Confidence 5689999999986 3322 356889999999988654
No 92
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.63 E-value=4.8e-09 Score=82.23 Aligned_cols=135 Identities=20% Similarity=0.178 Sum_probs=81.7
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLS 81 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 81 (311)
++++|++.-+......+|..+..+++|++|+|++|.+.....+..+++|+.|+++++.+.+. ++..+..+++|+.|++.
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEECB
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEecc
Confidence 46666665443211256666677777777777777765445566777777777777776553 44445567777777777
Q ss_pred cccceeEEEeCCCceEEEeeceeee-eeecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEE
Q 042404 82 YFDSLDLNICAPELKYLYLEGEFKD-IHLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFT 160 (311)
Q Consensus 82 ~c~~~~~~i~~~~L~~L~i~~~~~~-~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~ 160 (311)
+|.... ... -.+..+++|+.++++.+...+.. ......+..+++|+.|++..+..
T Consensus 104 ~N~l~~----------------~~~~~~l~~l~~L~~L~l~~N~l~~~~--------~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 104 GNKLKD----------------ISTLEPLKKLECLKSLDLFNCEVTNLN--------DYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp SSSCCS----------------SGGGGGGSSCSCCCEEECCSSGGGTST--------THHHHHHTTCSSCCEETTEETTS
T ss_pred CCccCc----------------chhHHHHhcCCCCCEEEeeCCcCcchH--------HHHHHHHHhCccCcEecCCCCCh
Confidence 664211 011 12346777888877665443211 00123567888888888877654
Q ss_pred E
Q 042404 161 K 161 (311)
Q Consensus 161 ~ 161 (311)
.
T Consensus 160 ~ 160 (168)
T 2ell_A 160 Q 160 (168)
T ss_dssp C
T ss_pred h
Confidence 3
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.63 E-value=7.3e-09 Score=86.11 Aligned_cols=186 Identities=11% Similarity=0.041 Sum_probs=119.4
Q ss_pred CceEEEEEeCCCeeeecCC-CcccCCCCcEEEcccee-eC--CCCCCCCCCcccEEEeee-eeeChHHHHHHHhcCcccc
Q 042404 2 DIRELVLELGEGEWFRVPS-CLFNCRKLTRLELFRCE-FD--PPLTFTGFPCLRSLNLHQ-VLVAPEAIESLISSCPLLE 76 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~-l~--~~~~~~~l~~L~~L~L~~-~~~~~~~l~~ll~~cp~Le 76 (311)
++++|+|.-... ..+|. .+..+++|++|+|++|. +. .+..+.++++|+.|++++ +.+..- ....+.++++|+
T Consensus 32 ~l~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~L~ 108 (239)
T 2xwt_C 32 STQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELPLLK 108 (239)
T ss_dssp TCCEEEEESCCC--SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCTTCC
T ss_pred cccEEEEeCCcc--eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCCCC
Confidence 578888877654 45665 57789999999999996 65 334677899999999998 666542 122366899999
Q ss_pred ccccccccceeEE--EeCCCce---EEEeece--eeee---eecCCCCcc-eeEEEEEEccccchhhcccccchHHHHhc
Q 042404 77 SLSLSYFDSLDLN--ICAPELK---YLYLEGE--FKDI---HLESTPLLV-SMSIAMYMTDDIAEHFEQSSSCNFLKILG 145 (311)
Q Consensus 77 ~L~l~~c~~~~~~--i~~~~L~---~L~i~~~--~~~~---~i~~~p~L~-~l~l~~~~~~~~~~~~~~~~~~~~~~~l~ 145 (311)
.|++.++....+. ...++|+ .|.+.++ ...+ .+..+++|+ .++++.+...... ...+.
T Consensus 109 ~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~-----------~~~~~ 177 (239)
T 2xwt_C 109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ-----------GYAFN 177 (239)
T ss_dssp EEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC-----------TTTTT
T ss_pred EEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC-----------HhhcC
Confidence 9999988643211 1224555 8888875 2333 255788999 8888765433211 11233
Q ss_pred CCCcceEEEEeeeE-EEEeecCCCCCCCCccc-cccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEe
Q 042404 146 GVPHLEKLVGYIYF-TKYLSIGDDPGRLPITY-NHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISG 215 (311)
Q Consensus 146 ~l~~l~~L~l~~~~-~~~l~~~~~~~~~~~~f-~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~ 215 (311)
. ++|+.|++..+. +..+..+ ....+ ++|+.|.+....+.. ++. ..+++|+.|.+..
T Consensus 178 ~-~~L~~L~L~~n~~l~~i~~~-----~~~~l~~~L~~L~l~~N~l~~------l~~--~~~~~L~~L~l~~ 235 (239)
T 2xwt_C 178 G-TKLDAVYLNKNKYLTVIDKD-----AFGGVYSGPSLLDVSQTSVTA------LPS--KGLEHLKELIARN 235 (239)
T ss_dssp T-CEEEEEECTTCTTCCEECTT-----TTTTCSBCCSEEECTTCCCCC------CCC--TTCTTCSEEECTT
T ss_pred C-CCCCEEEcCCCCCcccCCHH-----HhhccccCCcEEECCCCcccc------CCh--hHhccCceeeccC
Confidence 3 789999998773 5543221 11235 788888883221211 111 1577888887753
No 94
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.61 E-value=3.6e-09 Score=81.21 Aligned_cols=82 Identities=23% Similarity=0.272 Sum_probs=61.5
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLS 81 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 81 (311)
++++|++..+......+|..+..+++|++|+|++|.+.....+..+++|+.|+++++.+.+. ++..+..+++|+.|++.
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECT
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECC
Confidence 46677765543311267887788899999999988876556677888999999998887764 55666778888888888
Q ss_pred ccc
Q 042404 82 YFD 84 (311)
Q Consensus 82 ~c~ 84 (311)
+|.
T Consensus 97 ~N~ 99 (149)
T 2je0_A 97 GNK 99 (149)
T ss_dssp TSC
T ss_pred CCc
Confidence 875
No 95
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.61 E-value=6e-09 Score=88.48 Aligned_cols=185 Identities=14% Similarity=0.093 Sum_probs=128.7
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLS 81 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 81 (311)
++++|++.-+.. ..+ ..+..+++|++|+|++|.+..++.+..+++|++|+++++.+..- ....+..+++|+.|++.
T Consensus 42 ~L~~L~l~~~~i--~~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 42 SIDQIIANNSDI--KSV-QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TCCEEECTTSCC--CCC-TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECT
T ss_pred ceeeeeeCCCCc--ccc-cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEECC
Confidence 466666544432 233 35788999999999999987666788999999999999988753 23346789999999999
Q ss_pred cccceeE----EEeCCCceEEEeece-eeeee---ecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEE
Q 042404 82 YFDSLDL----NICAPELKYLYLEGE-FKDIH---LESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKL 153 (311)
Q Consensus 82 ~c~~~~~----~i~~~~L~~L~i~~~-~~~~~---i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L 153 (311)
+|....+ .-..++|++|.+.++ +..+. +..+++|+.++++.+...+.. ...++.+++|+.|
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------~~~~~~l~~L~~L 186 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP-----------EGVFDKLTQLKDL 186 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----------TTTTTTCTTCCEE
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC-----------HHHhcCCccCCEE
Confidence 9874431 123578999999986 33332 457899999999887644321 2335788999999
Q ss_pred EEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccC
Q 042404 154 VGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSN 218 (311)
Q Consensus 154 ~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~ 218 (311)
++..+.+.. .+......+++|+.|.+.. +.. ...||.|+.|.+..+..
T Consensus 187 ~L~~N~l~~-----~~~~~~~~l~~L~~L~l~~---N~~---------~~~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 187 RLYQNQLKS-----VPDGVFDRLTSLQYIWLHD---NPW---------DCTCPGIRYLSEWINKH 234 (272)
T ss_dssp ECCSSCCSC-----CCTTTTTTCTTCCEEECCS---SCB---------CCCTTTTHHHHHHHHHT
T ss_pred ECCCCcCCc-----cCHHHHhCCcCCCEEEccC---CCc---------cccCcHHHHHHHHHHhC
Confidence 999887653 2222223588999999833 221 13477777776665443
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.57 E-value=6.3e-10 Score=96.39 Aligned_cols=176 Identities=16% Similarity=0.045 Sum_probs=114.5
Q ss_pred cCCCCcEEEccceeeC--CCCCC--CCCCcccEEEeeeeeeChH--HHH-HHHhcCcccccccccccccee----EEEeC
Q 042404 24 NCRKLTRLELFRCEFD--PPLTF--TGFPCLRSLNLHQVLVAPE--AIE-SLISSCPLLESLSLSYFDSLD----LNICA 92 (311)
Q Consensus 24 ~~~~L~~L~L~~~~l~--~~~~~--~~l~~L~~L~L~~~~~~~~--~l~-~ll~~cp~Le~L~l~~c~~~~----~~i~~ 92 (311)
.+++|++|+|++|.+. .|..+ ..+++|++|+|+++.+.+. .+. .-+..+++|++|++.+|.... .....
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 4567999999999875 34444 7899999999999988752 111 224479999999999987533 22255
Q ss_pred CCceEEEeecee-ee-------eeecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEEee
Q 042404 93 PELKYLYLEGEF-KD-------IHLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYLS 164 (311)
Q Consensus 93 ~~L~~L~i~~~~-~~-------~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~ 164 (311)
++|++|.++++. .. ..+..+|+|++++++.+...... .....+++.+++|+.|+++.+.+....
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~--------~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 240 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT--------GVCAALAAAGVQPHSLDLSHNSLRATV 240 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH--------HHHHHHHHHTCCCSSEECTTSCCCCCC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH--------HHHHHHHhcCCCCCEEECCCCCCCccc
Confidence 789999999862 21 22357899999999877643210 111234577899999999988655321
Q ss_pred cCCCCCCCCc--cccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccCC
Q 042404 165 IGDDPGRLPI--TYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSNT 219 (311)
Q Consensus 165 ~~~~~~~~~~--~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~~ 219 (311)
|..+.. ..++|++|.+....+. .++..+ +++|+.|++..+...
T Consensus 241 ----p~~~~~~~~~~~L~~L~Ls~N~l~------~lp~~~--~~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 241 ----NPSAPRCMWSSALNSLNLSFAGLE------QVPKGL--PAKLRVLDLSSNRLN 285 (310)
T ss_dssp ----CSCCSSCCCCTTCCCEECCSSCCC------SCCSCC--CSCCSCEECCSCCCC
T ss_pred ----hhhHHhccCcCcCCEEECCCCCCC------chhhhh--cCCCCEEECCCCcCC
Confidence 222221 1368999888432222 112211 479999999876543
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.57 E-value=3e-08 Score=85.77 Aligned_cols=162 Identities=15% Similarity=0.076 Sum_probs=108.1
Q ss_pred CceEEEEEeCCCeeeecC----CCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChH-HHH--HHHhcC
Q 042404 2 DIRELVLELGEGEWFRVP----SCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPE-AIE--SLISSC 72 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp----~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~-~l~--~ll~~c 72 (311)
++++|+|.-.... ...| ..+..+++|++|+|++|.+. .+..+.++++|++|+|+++.+.+. .+. ..+..+
T Consensus 118 ~L~~L~Ls~n~i~-~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 196 (310)
T 4glp_A 118 ALSSLRLRNVSWA-TGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF 196 (310)
T ss_dssp CCSSCEEESCCCS-STTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS
T ss_pred CCCEEEeeccccc-chhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC
Confidence 5778888765431 1111 23346889999999999875 345677899999999999986542 222 223578
Q ss_pred cccccccccccccee---E----EEeCCCceEEEeece-eeee---eecC---CCCcceeEEEEEEccccchhhcccccc
Q 042404 73 PLLESLSLSYFDSLD---L----NICAPELKYLYLEGE-FKDI---HLES---TPLLVSMSIAMYMTDDIAEHFEQSSSC 138 (311)
Q Consensus 73 p~Le~L~l~~c~~~~---~----~i~~~~L~~L~i~~~-~~~~---~i~~---~p~L~~l~l~~~~~~~~~~~~~~~~~~ 138 (311)
|+|++|.+.+|..-. . .-..++|++|.++++ .... .+.. .++|++++++.+.....
T Consensus 197 ~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l---------- 266 (310)
T 4glp_A 197 PAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV---------- 266 (310)
T ss_dssp CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC----------
T ss_pred CCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch----------
Confidence 999999999986432 1 124479999999985 2222 1223 37999999987765422
Q ss_pred hHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCccccccceEEEe
Q 042404 139 NFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELY 185 (311)
Q Consensus 139 ~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~ 185 (311)
...+ .++|+.|+++.+.+..+ +. +..+++|+.|.+.
T Consensus 267 --p~~~--~~~L~~L~Ls~N~l~~~-----~~--~~~l~~L~~L~L~ 302 (310)
T 4glp_A 267 --PKGL--PAKLRVLDLSSNRLNRA-----PQ--PDELPEVDNLTLD 302 (310)
T ss_dssp --CSCC--CSCCSCEECCSCCCCSC-----CC--TTSCCCCSCEECS
T ss_pred --hhhh--cCCCCEEECCCCcCCCC-----ch--hhhCCCccEEECc
Confidence 1111 27899999999876632 22 2357889999883
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.55 E-value=1.4e-08 Score=85.79 Aligned_cols=99 Identities=18% Similarity=0.158 Sum_probs=64.8
Q ss_pred CcccCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeE-EEeCCCceEEE
Q 042404 21 CLFNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDL-NICAPELKYLY 99 (311)
Q Consensus 21 ~~~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~-~i~~~~L~~L~ 99 (311)
.+..+++|++|++++|.+...+.+..+++|+.|+|+++.+.+-.. +..+++|+.|++.+|..-++ .+..++|+.|.
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~ 112 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGIPSACLSRLF 112 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEE
T ss_pred chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCCcCccccCcccEEE
Confidence 456788999999999988755567889999999999998876322 77899999999998863220 00115566666
Q ss_pred eece-eeee-eecCCCCcceeEEEE
Q 042404 100 LEGE-FKDI-HLESTPLLVSMSIAM 122 (311)
Q Consensus 100 i~~~-~~~~-~i~~~p~L~~l~l~~ 122 (311)
+.++ ...+ .+..+++|+.++++.
T Consensus 113 L~~N~l~~~~~l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 113 LDNNELRDTDSLIHLKNLEILSIRN 137 (263)
T ss_dssp CCSSCCSBSGGGTTCTTCCEEECTT
T ss_pred ccCCccCCChhhcCcccccEEECCC
Confidence 5553 1111 133444444444433
No 99
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.50 E-value=2.1e-07 Score=87.89 Aligned_cols=97 Identities=18% Similarity=0.169 Sum_probs=45.7
Q ss_pred CCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeEE----EeCCCceEEEe
Q 042404 27 KLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDLN----ICAPELKYLYL 100 (311)
Q Consensus 27 ~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~----i~~~~L~~L~i 100 (311)
++++|+|++|.++ .+.++.++++|+.|+|+++.++.- .+..+.++++|++|+|.++..-.+. -..++|++|.+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 4556666655554 223455556666666665544321 0112345556666666555421111 12245555555
Q ss_pred ece-eee---eeecCCCCcceeEEEEEE
Q 042404 101 EGE-FKD---IHLESTPLLVSMSIAMYM 124 (311)
Q Consensus 101 ~~~-~~~---~~i~~~p~L~~l~l~~~~ 124 (311)
.++ ... ..+..+++|+.++++.+.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~ 159 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNL 159 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCc
Confidence 553 111 224455566666555443
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.50 E-value=2.7e-08 Score=81.72 Aligned_cols=157 Identities=15% Similarity=0.139 Sum_probs=96.4
Q ss_pred eeecCCCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeEEEeC
Q 042404 15 WFRVPSCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDLNICA 92 (311)
Q Consensus 15 ~~~lp~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~i~~ 92 (311)
...+|..+. ++|+.|+|+++.+. .+..+..+++|+.|+|+++.+..- .+..+.++++|+.|+|.++....
T Consensus 23 l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~----- 94 (220)
T 2v9t_B 23 LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKITE----- 94 (220)
T ss_dssp CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCCCC-----
T ss_pred cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcCCc-----
Confidence 456777655 68999999998876 344677889999999999877642 12335678888888888764211
Q ss_pred CCceEEEeeceeeeeeecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCC
Q 042404 93 PELKYLYLEGEFKDIHLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRL 172 (311)
Q Consensus 93 ~~L~~L~i~~~~~~~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~ 172 (311)
.....+..+++|+.++++.+...... ...+..+++|+.|++..+.+..+.. ..
T Consensus 95 -----------l~~~~f~~l~~L~~L~L~~N~l~~~~-----------~~~~~~l~~L~~L~L~~N~l~~~~~-----~~ 147 (220)
T 2v9t_B 95 -----------LPKSLFEGLFSLQLLLLNANKINCLR-----------VDAFQDLHNLNLLSLYDNKLQTIAK-----GT 147 (220)
T ss_dssp -----------CCTTTTTTCTTCCEEECCSSCCCCCC-----------TTTTTTCTTCCEEECCSSCCSCCCT-----TT
T ss_pred -----------cCHhHccCCCCCCEEECCCCCCCEeC-----------HHHcCCCCCCCEEECCCCcCCEECH-----HH
Confidence 11111345677777777665543211 2235677888888888887654332 22
Q ss_pred CccccccceEEEeeeecCCHHHHHHHHHHHhcCC
Q 042404 173 PITYNHLKVIELYQVSFEDMKEILVVIRLITNSP 206 (311)
Q Consensus 173 ~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p 206 (311)
...+++|++|.+..-.+.-.-++.++...++..+
T Consensus 148 ~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~~~ 181 (220)
T 2v9t_B 148 FSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNP 181 (220)
T ss_dssp TTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCC
T ss_pred HhCCCCCCEEEeCCCCcCCCCccHHHHHHHHhCC
Confidence 2246778888874322211123446666665543
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.45 E-value=2.7e-08 Score=83.99 Aligned_cols=140 Identities=14% Similarity=0.040 Sum_probs=101.3
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLS 81 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 81 (311)
++++|++.-+.. ..+| .+..+++|++|+|++|.+...+.+..+++|+.|+++++.+++- +. +.. ++|+.|++.
T Consensus 42 ~L~~L~l~~n~i--~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l--~~-~~~-~~L~~L~L~ 114 (263)
T 1xeu_A 42 GVQNFNGDNSNI--QSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNL--NG-IPS-ACLSRLFLD 114 (263)
T ss_dssp TCSEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCC--TT-CCC-SSCCEEECC
T ss_pred cCcEEECcCCCc--ccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCc--Cc-ccc-CcccEEEcc
Confidence 567777655533 3566 6888999999999999887433488999999999999988652 22 223 899999999
Q ss_pred cccceeE--EEeCCCceEEEeece-eeee-eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEee
Q 042404 82 YFDSLDL--NICAPELKYLYLEGE-FKDI-HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYI 157 (311)
Q Consensus 82 ~c~~~~~--~i~~~~L~~L~i~~~-~~~~-~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~ 157 (311)
+|..-.+ ....++|+.|.+.++ ...+ .+..+++|+.++++.+...+ ...+..+++|+.|++.+
T Consensus 115 ~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~-------------~~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 115 NNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITN-------------TGGLTRLKKVNWIDLTG 181 (263)
T ss_dssp SSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCB-------------CTTSTTCCCCCEEEEEE
T ss_pred CCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcc-------------hHHhccCCCCCEEeCCC
Confidence 9864331 113478999999885 3332 35578999999887765432 13467889999999998
Q ss_pred eEEE
Q 042404 158 YFTK 161 (311)
Q Consensus 158 ~~~~ 161 (311)
+.+.
T Consensus 182 N~~~ 185 (263)
T 1xeu_A 182 QKCV 185 (263)
T ss_dssp EEEE
T ss_pred Cccc
Confidence 8764
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.43 E-value=4.8e-08 Score=80.69 Aligned_cols=154 Identities=14% Similarity=0.110 Sum_probs=92.7
Q ss_pred eeecCCCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeEEEeC
Q 042404 15 WFRVPSCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDLNICA 92 (311)
Q Consensus 15 ~~~lp~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~i~~ 92 (311)
...+|..+. ++|++|+|++|.+. .+..+.++++|+.|+|+++.+..- ....+.++++|+.|+|.++....
T Consensus 31 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~l~~----- 102 (229)
T 3e6j_A 31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQLTV----- 102 (229)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCC-----
T ss_pred cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCcCCc-----
Confidence 356776554 78999999988875 345577888999999998877542 12335677888888888764211
Q ss_pred CCceEEEeeceeeeeeecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCC
Q 042404 93 PELKYLYLEGEFKDIHLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRL 172 (311)
Q Consensus 93 ~~L~~L~i~~~~~~~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~ 172 (311)
.....+..+++|+.++++.+..... ...+..+++|+.|+++.+.+..+.. ..
T Consensus 103 -----------l~~~~~~~l~~L~~L~Ls~N~l~~l------------p~~~~~l~~L~~L~L~~N~l~~~~~-----~~ 154 (229)
T 3e6j_A 103 -----------LPSAVFDRLVHLKELFMCCNKLTEL------------PRGIERLTHLTHLALDQNQLKSIPH-----GA 154 (229)
T ss_dssp -----------CCTTTTTTCTTCCEEECCSSCCCSC------------CTTGGGCTTCSEEECCSSCCCCCCT-----TT
T ss_pred -----------cChhHhCcchhhCeEeccCCccccc------------CcccccCCCCCEEECCCCcCCccCH-----HH
Confidence 0111133566777777665543321 1224677888888888886654322 22
Q ss_pred CccccccceEEEeeeecC-CHHHHHHHHHHHhc
Q 042404 173 PITYNHLKVIELYQVSFE-DMKEILVVIRLITN 204 (311)
Q Consensus 173 ~~~f~~L~~L~l~~~~~~-~~~~~~~l~~~l~~ 204 (311)
...+++|+.|.+.+..+. +..++..+..++..
T Consensus 155 ~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~ 187 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPWDCECRDIMYLRNWVAD 187 (229)
T ss_dssp TTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHH
T ss_pred HhCCCCCCEEEeeCCCccCCcchhHHHHHHHHh
Confidence 235778888888432221 11234455555543
No 103
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.40 E-value=2.4e-08 Score=88.22 Aligned_cols=185 Identities=13% Similarity=0.107 Sum_probs=102.8
Q ss_pred CCCcEEEccceeeC-C---------CCCCCCCCcccEEEeeeeeeC--------hHHHHHHHhcCcccccccccccccee
Q 042404 26 RKLTRLELFRCEFD-P---------PLTFTGFPCLRSLNLHQVLVA--------PEAIESLISSCPLLESLSLSYFDSLD 87 (311)
Q Consensus 26 ~~L~~L~L~~~~l~-~---------~~~~~~l~~L~~L~L~~~~~~--------~~~l~~ll~~cp~Le~L~l~~c~~~~ 87 (311)
..++.|.++.+.+. . ..+...|++|+.|.+..+... ..++..++..+|+|++|.|.+|.+..
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 35677777766533 1 111335788888888654322 12477888999999999998885444
Q ss_pred -EEEeCCCceEEEeecee-e-----eeeecCCCCcceeEEEEEEccccchhhcccccchHHHHh--cCCCcceEEEEeee
Q 042404 88 -LNICAPELKYLYLEGEF-K-----DIHLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKIL--GGVPHLEKLVGYIY 158 (311)
Q Consensus 88 -~~i~~~~L~~L~i~~~~-~-----~~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l--~~l~~l~~L~l~~~ 158 (311)
-.+..++|++|.+..+- . .+....+|+|+++.++..... +.. ......+...+ ..+|+|+.|.+..+
T Consensus 187 l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~-~~~---~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 187 IGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVED-YGF---DGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp CCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGG-GTC---CSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred eccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccc-ccc---chhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 22346889999887642 1 112236788888887642211 000 00001112222 24678888888654
Q ss_pred EEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEecc
Q 042404 159 FTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSS 217 (311)
Q Consensus 159 ~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~ 217 (311)
.+........ ...+ .+++|++|.+ ..+.-...+...+...++++|+|+.|++..+.
T Consensus 263 ~i~~~~~~~l-a~a~-~~~~L~~LdL-s~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 263 EEQNVVVEMF-LESD-ILPQLETMDI-SAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TTHHHHHHHH-HHCS-SGGGCSEEEC-CSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCchHHHHHH-HhCc-cCCCCCEEEC-CCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 3211000000 0011 3677888888 33333333444555555677888888886553
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.38 E-value=4.7e-08 Score=91.45 Aligned_cols=112 Identities=15% Similarity=0.087 Sum_probs=69.0
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLS 81 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 81 (311)
+++.|+|.-... ..+|..++ ++|++|+|++|.+...+ ..+++|+.|+|+++.++. ++. +.. +|+.|++.
T Consensus 60 ~L~~L~Ls~n~L--~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNL--SSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCC--SCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCC--CccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hhc--CCCEEECC
Confidence 567777655433 34777664 67888888888776333 457888888888887654 332 222 77888877
Q ss_pred cccceeEEEeCCCceEEEeece-eeeeeecCCCCcceeEEEEEEc
Q 042404 82 YFDSLDLNICAPELKYLYLEGE-FKDIHLESTPLLVSMSIAMYMT 125 (311)
Q Consensus 82 ~c~~~~~~i~~~~L~~L~i~~~-~~~~~i~~~p~L~~l~l~~~~~ 125 (311)
++....+....++|+.|.+.++ ...+.- ..++|+.++++.+..
T Consensus 129 ~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 129 NNQLTMLPELPALLEYINADNNQLTMLPE-LPTSLEVLSVRNNQL 172 (571)
T ss_dssp SSCCSCCCCCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCC
T ss_pred CCcCCCCCCcCccccEEeCCCCccCcCCC-cCCCcCEEECCCCCC
Confidence 7654331114567777777764 222222 456677777665543
No 105
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.38 E-value=1.7e-07 Score=88.60 Aligned_cols=60 Identities=12% Similarity=0.127 Sum_probs=36.3
Q ss_pred cCCCcceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccCC
Q 042404 145 GGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSNT 219 (311)
Q Consensus 145 ~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~~ 219 (311)
..+++|+.|+++.+.+.. ++..+++|+.|.+.. +... .++..+.++|+|+.|++..++..
T Consensus 238 ~~l~~L~~L~Ls~N~L~~---------lp~~~~~L~~L~Ls~---N~L~---~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 238 VLPSELKELMVSGNRLTS---------LPMLPSGLLSLSVYR---NQLT---RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CCCTTCCEEECCSSCCSC---------CCCCCTTCCEEECCS---SCCC---SCCGGGGGSCTTCEEECCSCCCC
T ss_pred CCCCcCcEEECCCCCCCc---------CCcccccCcEEeCCC---CCCC---cCCHHHhhccccCEEEecCCCCC
Confidence 345677777777664431 222467788888732 2211 33445778888888888877653
No 106
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.35 E-value=7.2e-08 Score=91.15 Aligned_cols=194 Identities=16% Similarity=0.137 Sum_probs=120.5
Q ss_pred CceEEEEEeCCCeeeecCC-CcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccc
Q 042404 2 DIRELVLELGEGEWFRVPS-CLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESL 78 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 78 (311)
++++|+|..... ..+|+ ++.++++|++|+|++|.+. ++.++.++++|++|+|+++.++.- ....+.++++|++|
T Consensus 53 ~~~~LdLs~N~i--~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 53 STKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKL 129 (635)
T ss_dssp TCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTCCEE
T ss_pred CCCEEEeeCCCC--CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCCCEE
Confidence 577888766544 46664 6778999999999999886 455688999999999999987642 12346789999999
Q ss_pred cccccccee---E-EEeCCCceEEEeece-eeee----eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCC-
Q 042404 79 SLSYFDSLD---L-NICAPELKYLYLEGE-FKDI----HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVP- 148 (311)
Q Consensus 79 ~l~~c~~~~---~-~i~~~~L~~L~i~~~-~~~~----~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~- 148 (311)
++.+|.... . .-..++|++|.+.++ ...+ .+..+++|+.++++.+...+... ..+.. +..++
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~l~~-L~~l~~ 201 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-------TDLRV-LHQMPL 201 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-------GGGHH-HHTCTT
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc-------ccccc-hhhhhh
Confidence 999986433 1 223578999999985 2222 24578999999987765432210 11122 23333
Q ss_pred cceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEec
Q 042404 149 HLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGS 216 (311)
Q Consensus 149 ~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~ 216 (311)
....+.+..+.+..+..+. . ....+..|.+ ..+... .......+...+.++...+...
T Consensus 202 ~~~~~~ls~n~l~~i~~~~-----~-~~~~~~~l~l-~~n~~~---~~~~~~~~~~l~~l~~~~l~~~ 259 (635)
T 4g8a_A 202 LNLSLDLSLNPMNFIQPGA-----F-KEIRLHKLTL-RNNFDS---LNVMKTCIQGLAGLEVHRLVLG 259 (635)
T ss_dssp CCCEEECTTCCCCEECTTT-----T-TTCEEEEEEE-ESCCSS---HHHHHHHHHTTTTCEEEEEEEE
T ss_pred hhhhhhcccCcccccCccc-----c-cchhhhhhhh-hccccc---ccccchhhcCCccccccccccc
Confidence 2345666555544332211 1 1223444444 212222 2344566777777776666543
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.33 E-value=1.1e-07 Score=77.02 Aligned_cols=156 Identities=15% Similarity=0.101 Sum_probs=92.5
Q ss_pred eeecCCCcccCCCCcEEEccceeeCC--CCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeEEEeC
Q 042404 15 WFRVPSCLFNCRKLTRLELFRCEFDP--PLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDLNICA 92 (311)
Q Consensus 15 ~~~lp~~~~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~i~~ 92 (311)
...+|..+ .++|++|+|+++.+.. +..+.++++|+.|++.++.+..- ....+..+++|++|++.++....
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~----- 90 (208)
T 2o6s_A 19 RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQS----- 90 (208)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCC-----
T ss_pred ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCc-----
Confidence 34666655 3589999999998763 33467899999999999887642 22335678888888888764211
Q ss_pred CCceEEEeeceeeeeeecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCC
Q 042404 93 PELKYLYLEGEFKDIHLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRL 172 (311)
Q Consensus 93 ~~L~~L~i~~~~~~~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~ 172 (311)
.....+..+++|+.++++.+...+.. ...+..+++|+.|++..+.+.. .+...
T Consensus 91 -----------~~~~~~~~l~~L~~L~L~~N~l~~~~-----------~~~~~~l~~L~~L~l~~N~l~~-----~~~~~ 143 (208)
T 2o6s_A 91 -----------LPNGVFDKLTQLKELALNTNQLQSLP-----------DGVFDKLTQLKDLRLYQNQLKS-----VPDGV 143 (208)
T ss_dssp -----------CCTTTTTTCTTCCEEECCSSCCCCCC-----------TTTTTTCTTCCEEECCSSCCSC-----CCTTT
T ss_pred -----------cCHhHhcCccCCCEEEcCCCcCcccC-----------HhHhccCCcCCEEECCCCccce-----eCHHH
Confidence 01111235566666666554332110 2224667778888887765542 22222
Q ss_pred CccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEecc
Q 042404 173 PITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSS 217 (311)
Q Consensus 173 ~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~ 217 (311)
...+++|++|.+.. +.. ...||.|+.|.+..+.
T Consensus 144 ~~~l~~L~~L~l~~---N~~---------~~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 144 FDRLTSLQYIWLHD---NPW---------DCTCPGIRYLSEWINK 176 (208)
T ss_dssp TTTCTTCCEEECCS---CCB---------CCCTTTTHHHHHHHHH
T ss_pred hccCCCccEEEecC---CCe---------ecCCCCHHHHHHHHHh
Confidence 22467777777732 221 1346666666665544
No 108
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.33 E-value=8.3e-08 Score=84.47 Aligned_cols=181 Identities=17% Similarity=0.126 Sum_probs=102.4
Q ss_pred eeecCCCcccCCCCcEEEccceeeC-CC-CCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccccee-E---
Q 042404 15 WFRVPSCLFNCRKLTRLELFRCEFD-PP-LTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLD-L--- 88 (311)
Q Consensus 15 ~~~lp~~~~~~~~L~~L~L~~~~l~-~~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~-~--- 88 (311)
...+|..+. +++++|+|++|.+. .| .++.++++|++|+|+++.+...--...+.++++|.++.+..+..+. +
T Consensus 21 Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 21 VTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp CCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence 457787763 68999999999886 33 4578999999999999875332111235677887776665554433 2
Q ss_pred -EEeCCCceEEEeece-eee---eeecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCC-CcceEEEEeeeEEEE
Q 042404 89 -NICAPELKYLYLEGE-FKD---IHLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGV-PHLEKLVGYIYFTKY 162 (311)
Q Consensus 89 -~i~~~~L~~L~i~~~-~~~---~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~l~~L~l~~~~~~~ 162 (311)
.-..++|++|.+.++ ... .......++..+.+......... . ...+..+ ..++.|++..+.++.
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l---------~-~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI---------E-RNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEE---------C-TTSSTTSBSSCEEEECCSSCCCE
T ss_pred hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccc---------c-ccchhhcchhhhhhccccccccC
Confidence 224578888888875 222 12223444445544332211100 0 1112333 457888888877665
Q ss_pred eecCCCCCCCCccccccceEEEeeeecCCHHHHHHHH-HHHhcCCCcceEEEEeccC
Q 042404 163 LSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVI-RLITNSPNLKELHISGSSN 218 (311)
Q Consensus 163 l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~-~~l~~~p~L~~L~i~~~~~ 218 (311)
+..+ .. ...++++|.+... +. +..++ ..++.+++|+.|+++.+..
T Consensus 169 i~~~-----~f-~~~~L~~l~l~~~--n~---l~~i~~~~f~~l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 169 IHNS-----AF-NGTQLDELNLSDN--NN---LEELPNDVFHGASGPVILDISRTRI 214 (350)
T ss_dssp ECTT-----SS-TTEEEEEEECTTC--TT---CCCCCTTTTTTEECCSEEECTTSCC
T ss_pred CChh-----hc-cccchhHHhhccC--Cc---ccCCCHHHhccCcccchhhcCCCCc
Confidence 4321 11 2345666655211 11 11222 3467788888888886654
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.31 E-value=1.6e-07 Score=77.01 Aligned_cols=132 Identities=15% Similarity=0.107 Sum_probs=87.8
Q ss_pred eecCCCcccCCCCcEEEccceeeCC--C-CCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeE----
Q 042404 16 FRVPSCLFNCRKLTRLELFRCEFDP--P-LTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDL---- 88 (311)
Q Consensus 16 ~~lp~~~~~~~~L~~L~L~~~~l~~--~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~---- 88 (311)
..+|..+. ..+++|+|++|.+.. + ..+..+++|+.|+|+++.++.- ....+.++++|+.|++.++....+
T Consensus 24 ~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 100 (220)
T 2v70_A 24 NKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNEILLTSNRLENVQHKM 100 (220)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCGGG
T ss_pred ccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCEEECCCCccCccCHhH
Confidence 45666553 356788888887752 2 2356788888888888876542 122356788888888888764331
Q ss_pred EEeCCCceEEEeece-eeee---eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEE
Q 042404 89 NICAPELKYLYLEGE-FKDI---HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTK 161 (311)
Q Consensus 89 ~i~~~~L~~L~i~~~-~~~~---~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~ 161 (311)
....++|++|.+.++ ...+ .+..+++|+.++++.+...+.. ...+..+++|+.|++..+.+.
T Consensus 101 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----------~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 101 FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA-----------PGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC-----------TTTTTTCTTCCEEECCSCCEE
T ss_pred hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC-----------HHHhcCCCCCCEEEecCcCCc
Confidence 123468888888875 2222 3557888999988776543221 234678899999999988754
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.29 E-value=4e-08 Score=76.93 Aligned_cols=128 Identities=20% Similarity=0.132 Sum_probs=84.2
Q ss_pred CCCCcEEEccceeeC---CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeEEEeCCCceEEEee
Q 042404 25 CRKLTRLELFRCEFD---PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDLNICAPELKYLYLE 101 (311)
Q Consensus 25 ~~~L~~L~L~~~~l~---~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~i~~~~L~~L~i~ 101 (311)
.++|++|+|++|.+. .|..+..+++|+.|+++++.+..- ..+..+++|+.|++.+|.....
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~------------- 86 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGG------------- 86 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSC-------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchH-------------
Confidence 478999999998875 455567889999999999887653 3456778888888877652110
Q ss_pred ceeeeeeecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEEeecCCCCC---CCCccccc
Q 042404 102 GEFKDIHLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYLSIGDDPG---RLPITYNH 178 (311)
Q Consensus 102 ~~~~~~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~---~~~~~f~~ 178 (311)
....+..+++|+.++++.+...+. .....+..+++|+.|++..+.+.. .+. .....+++
T Consensus 87 ---~~~~~~~l~~L~~L~Ls~N~l~~~----------~~~~~l~~l~~L~~L~l~~N~l~~-----~~~~~~~~~~~l~~ 148 (168)
T 2ell_A 87 ---LDMLAEKLPNLTHLNLSGNKLKDI----------STLEPLKKLECLKSLDLFNCEVTN-----LNDYRESVFKLLPQ 148 (168)
T ss_dssp ---CCHHHHHCTTCCEEECBSSSCCSS----------GGGGGGSSCSCCCEEECCSSGGGT-----STTHHHHHHTTCSS
T ss_pred ---HHHHHhhCCCCCEEeccCCccCcc----------hhHHHHhcCCCCCEEEeeCCcCcc-----hHHHHHHHHHhCcc
Confidence 001122477788887776654321 012446889999999999886432 222 12235788
Q ss_pred cceEEEee
Q 042404 179 LKVIELYQ 186 (311)
Q Consensus 179 L~~L~l~~ 186 (311)
|++|.+..
T Consensus 149 L~~L~l~~ 156 (168)
T 2ell_A 149 LTYLDGYD 156 (168)
T ss_dssp CCEETTEE
T ss_pred CcEecCCC
Confidence 99888843
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.29 E-value=1.3e-07 Score=77.51 Aligned_cols=81 Identities=26% Similarity=0.266 Sum_probs=62.2
Q ss_pred CceEEEEEeCCCeeeecCC-CcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccc
Q 042404 2 DIRELVLELGEGEWFRVPS-CLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESL 78 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 78 (311)
++++|+|.-... ..+|. .+..+++|++|+|++|.+. .|..+.++++|+.|+|+++.+..- ....+.++++|+.|
T Consensus 33 ~l~~L~l~~n~i--~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 33 TITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQLL 109 (220)
T ss_dssp TCCEEECCSSCC--CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred CCCEEECCCCcC--CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc-CHhHccCCCCCCEE
Confidence 567777765543 35555 5777899999999999886 466788999999999999988642 22345678999999
Q ss_pred ccccccc
Q 042404 79 SLSYFDS 85 (311)
Q Consensus 79 ~l~~c~~ 85 (311)
+|.++..
T Consensus 110 ~L~~N~l 116 (220)
T 2v9t_B 110 LLNANKI 116 (220)
T ss_dssp ECCSSCC
T ss_pred ECCCCCC
Confidence 9998753
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.28 E-value=1.3e-07 Score=83.52 Aligned_cols=137 Identities=19% Similarity=0.080 Sum_probs=84.8
Q ss_pred eecCCCcccCCCCcEEEccceeeC--CCCCCC-CCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeEE---
Q 042404 16 FRVPSCLFNCRKLTRLELFRCEFD--PPLTFT-GFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDLN--- 89 (311)
Q Consensus 16 ~~lp~~~~~~~~L~~L~L~~~~l~--~~~~~~-~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~--- 89 (311)
..+|..+. +.++.|+|++|.+. .+..+. ++++|+.|+|+++.+..- ....+.++++|+.|+|+++....+.
T Consensus 31 ~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 107 (361)
T 2xot_A 31 PNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRYLDLSSNHLHTLDEFL 107 (361)
T ss_dssp SSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred CccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc-ChhhccCCCCCCEEECCCCcCCcCCHHH
Confidence 45666554 35788888888775 233354 788888888888876542 1123567888888888887643221
Q ss_pred -EeCCCceEEEeece-eeee---eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEEe
Q 042404 90 -ICAPELKYLYLEGE-FKDI---HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYL 163 (311)
Q Consensus 90 -i~~~~L~~L~i~~~-~~~~---~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l 163 (311)
...++|+.|.+.++ ...+ .+..+++|+.++++.+........ ...-+..+++|+.|++..+.+..+
T Consensus 108 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~--------~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 108 FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE--------LIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGG--------GTC----CTTCCEEECCSSCCCCC
T ss_pred hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHH--------HhcCcccCCcCCEEECCCCCCCcc
Confidence 13467888888875 2222 355788888888877654432110 011115678888888888776543
No 113
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.26 E-value=1.5e-07 Score=85.86 Aligned_cols=116 Identities=12% Similarity=0.114 Sum_probs=67.9
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLS 81 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 81 (311)
++++|++..+.. ..+| .+..+++|++|++++|.+...+. ..++|+.|+++++.+.+ ++. +.++++|+.|++.
T Consensus 132 ~L~~L~L~~n~l--~~lp-~~~~l~~L~~L~l~~N~l~~lp~--~~~~L~~L~L~~n~l~~--l~~-~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 132 LLEYLGVSNNQL--EKLP-ELQNSSFLKIIDVDNNSLKKLPD--LPPSLEFIAAGNNQLEE--LPE-LQNLPFLTAIYAD 203 (454)
T ss_dssp TCCEEECCSSCC--SSCC-CCTTCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECC
T ss_pred CCCEEECcCCCC--CCCc-ccCCCCCCCEEECCCCcCcccCC--CcccccEEECcCCcCCc--Ccc-ccCCCCCCEEECC
Confidence 345555444332 2355 46667777777777766543221 23467777777776654 222 5677888888887
Q ss_pred cccceeEEEeCCCceEEEeecee-eee-eecCCCCcceeEEEEEEc
Q 042404 82 YFDSLDLNICAPELKYLYLEGEF-KDI-HLESTPLLVSMSIAMYMT 125 (311)
Q Consensus 82 ~c~~~~~~i~~~~L~~L~i~~~~-~~~-~i~~~p~L~~l~l~~~~~ 125 (311)
+|...++....++|++|.+.++. ..+ .+..+++|+.++++.+..
T Consensus 204 ~N~l~~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 204 NNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLL 249 (454)
T ss_dssp SSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred CCcCCcCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcC
Confidence 77543322223578888887752 222 355777888888766543
No 114
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.26 E-value=3.6e-07 Score=71.62 Aligned_cols=71 Identities=8% Similarity=0.111 Sum_probs=54.0
Q ss_pred eecCCCcccCCCCcEEEccceeeCC--CCCCCCCCcccEEEeeeee-eChHHHHHHHhc---Cccccccccccccce
Q 042404 16 FRVPSCLFNCRKLTRLELFRCEFDP--PLTFTGFPCLRSLNLHQVL-VAPEAIESLISS---CPLLESLSLSYFDSL 86 (311)
Q Consensus 16 ~~lp~~~~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~---cp~Le~L~l~~c~~~ 86 (311)
..+|..-...-.|+.|+|++|.+++ ...+.++++|++|+|++|. +++..+..+-.. |++|++|+|++|..+
T Consensus 51 ~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 51 NHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp GGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred ccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence 4577654445689999999988753 2235688999999999996 888888886653 788999999998754
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.25 E-value=1.8e-07 Score=76.70 Aligned_cols=158 Identities=13% Similarity=0.130 Sum_probs=103.8
Q ss_pred CcEEEccceeeC-CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeEE----EeCCCceEEEeec
Q 042404 28 LTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDLN----ICAPELKYLYLEG 102 (311)
Q Consensus 28 L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~----i~~~~L~~L~i~~ 102 (311)
.+.++++++.+. .|..+ .+.++.|+|+++.+..-.....+..+++|+.|++.++....+. -..++|++|.+.+
T Consensus 13 ~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 468899988876 34333 4567999999998765322234678999999999988643321 1346899999998
Q ss_pred e-eeee---eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCccccc
Q 042404 103 E-FKDI---HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNH 178 (311)
Q Consensus 103 ~-~~~~---~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~ 178 (311)
+ ...+ .+..+++|+.++++.+...+.. ...+..+++|+.|++..+.+..+. +..+. .+++
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~-~l~~ 154 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVG-----------NDSFIGLSSVRLLSLYDNQITTVA----PGAFD-TLHS 154 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBC-----------TTSSTTCTTCSEEECTTSCCCCBC----TTTTT-TCTT
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeEC-----------HhHcCCCccCCEEECCCCcCCEEC----HHHhc-CCCC
Confidence 5 3322 2567899999998776644321 233578899999999988776532 22232 5788
Q ss_pred cceEEEeeeecCCHHHHHHHHHHHh
Q 042404 179 LKVIELYQVSFEDMKEILVVIRLIT 203 (311)
Q Consensus 179 L~~L~l~~~~~~~~~~~~~l~~~l~ 203 (311)
|++|.+..-.+...-++.++...++
T Consensus 155 L~~L~L~~N~l~c~c~l~~l~~~~~ 179 (220)
T 2v70_A 155 LSTLNLLANPFNCNCYLAWLGEWLR 179 (220)
T ss_dssp CCEEECCSCCEECSGGGHHHHHHHH
T ss_pred CCEEEecCcCCcCCCchHHHHHHHH
Confidence 9999884332222223445555555
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.20 E-value=4.7e-07 Score=74.64 Aligned_cols=81 Identities=16% Similarity=0.095 Sum_probs=61.1
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeCC-C-CCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFDP-P-LTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLS 79 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 79 (311)
++++|+|...... ...|..+..+++|++|+|++|.+.. + ..+.++++|+.|+|+++.+..- ....+..+++|+.|+
T Consensus 41 ~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 41 NAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKELF 118 (229)
T ss_dssp TCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEE
T ss_pred CCCEEEcCCCccC-ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCeEe
Confidence 5778887666442 2336667889999999999999863 3 3467899999999999988642 223456789999999
Q ss_pred ccccc
Q 042404 80 LSYFD 84 (311)
Q Consensus 80 l~~c~ 84 (311)
+.++.
T Consensus 119 Ls~N~ 123 (229)
T 3e6j_A 119 MCCNK 123 (229)
T ss_dssp CCSSC
T ss_pred ccCCc
Confidence 98875
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.19 E-value=8.3e-08 Score=73.48 Aligned_cols=58 Identities=17% Similarity=0.011 Sum_probs=47.6
Q ss_pred CCCCcEEEccceeeC---CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccc
Q 042404 25 CRKLTRLELFRCEFD---PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDS 85 (311)
Q Consensus 25 ~~~L~~L~L~~~~l~---~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 85 (311)
.++|+.|++++|.+. .|..+..+++|+.|+++++.+.+- ..+..+++|+.|++.+|..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i 76 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRV 76 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcc
Confidence 478999999999886 455668899999999999987664 4467889999999988763
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.17 E-value=3.2e-07 Score=74.35 Aligned_cols=80 Identities=21% Similarity=0.183 Sum_probs=59.6
Q ss_pred CceEEEEEeCCCeeeecCCC-cccCCCCcEEEccceeeCC-C-CCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccc
Q 042404 2 DIRELVLELGEGEWFRVPSC-LFNCRKLTRLELFRCEFDP-P-LTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESL 78 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 78 (311)
++++|++..... ..+|.. +..+++|++|+|+++.+.. + ..+..+++|++|+++++.+..- ....+..+++|+.|
T Consensus 29 ~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 29 QTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKEL 105 (208)
T ss_dssp TCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred CCcEEEcCCCcc--CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCEE
Confidence 567777765543 356655 5689999999999998863 3 3367899999999999987642 22335678999999
Q ss_pred cccccc
Q 042404 79 SLSYFD 84 (311)
Q Consensus 79 ~l~~c~ 84 (311)
++.++.
T Consensus 106 ~L~~N~ 111 (208)
T 2o6s_A 106 ALNTNQ 111 (208)
T ss_dssp ECCSSC
T ss_pred EcCCCc
Confidence 998775
No 119
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.16 E-value=1.4e-06 Score=79.45 Aligned_cols=190 Identities=17% Similarity=0.117 Sum_probs=106.1
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLS 81 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 81 (311)
++++|++..+.. ..+| .+..+++|++|++++|.+...+.. .++|+.|+++++.+.. ++. +..+++|+.|++.
T Consensus 174 ~L~~L~L~~n~l--~~l~-~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 174 SLEFIAAGNNQL--EELP-ELQNLPFLTAIYADNNSLKKLPDL--PLSLESIVAGNNILEE--LPE-LQNLPFLTTIYAD 245 (454)
T ss_dssp TCCEEECCSSCC--SSCC-CCTTCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECC
T ss_pred cccEEECcCCcC--CcCc-cccCCCCCCEEECCCCcCCcCCCC--cCcccEEECcCCcCCc--ccc-cCCCCCCCEEECC
Confidence 467788766543 3466 578889999999998887632222 3588888888887762 332 5678888888888
Q ss_pred cccceeEEEeCCCceEEEeece-eeeeeecCCCCcceeEEEEEEccccch---hhc--ccccchHHHHhcCC-CcceEEE
Q 042404 82 YFDSLDLNICAPELKYLYLEGE-FKDIHLESTPLLVSMSIAMYMTDDIAE---HFE--QSSSCNFLKILGGV-PHLEKLV 154 (311)
Q Consensus 82 ~c~~~~~~i~~~~L~~L~i~~~-~~~~~i~~~p~L~~l~l~~~~~~~~~~---~~~--~~~~~~~~~~l~~l-~~l~~L~ 154 (311)
++....+....++|+.|.+.++ ...+.- ..++|+.++++.+...+... ... +-....+.. +..+ ++++.|+
T Consensus 246 ~N~l~~l~~~~~~L~~L~l~~N~l~~l~~-~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~-i~~~~~~L~~L~ 323 (454)
T 1jl5_A 246 NNLLKTLPDLPPSLEALNVRDNYLTDLPE-LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS-LCDLPPSLEELN 323 (454)
T ss_dssp SSCCSSCCSCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSE-ECCCCTTCCEEE
T ss_pred CCcCCcccccccccCEEECCCCcccccCc-ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCc-ccCCcCcCCEEE
Confidence 8753322112367777777764 222221 34666777665544322100 000 000000011 1223 3566666
Q ss_pred EeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEEEEeccCC
Q 042404 155 GYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELHISGSSNT 219 (311)
Q Consensus 155 l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~i~~~~~~ 219 (311)
++.+.+. .++..+++|+.|.+....+. .++. .+++|+.|++..+...
T Consensus 324 Ls~N~l~---------~lp~~~~~L~~L~L~~N~l~------~lp~---~l~~L~~L~L~~N~l~ 370 (454)
T 1jl5_A 324 VSNNKLI---------ELPALPPRLERLIASFNHLA------EVPE---LPQNLKQLHVEYNPLR 370 (454)
T ss_dssp CCSSCCS---------CCCCCCTTCCEEECCSSCCS------CCCC---CCTTCCEEECCSSCCS
T ss_pred CCCCccc---------cccccCCcCCEEECCCCccc------cccc---hhhhccEEECCCCCCC
Confidence 6655332 12333678888888322111 2222 4688888888866543
No 120
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.13 E-value=1.9e-07 Score=75.21 Aligned_cols=61 Identities=28% Similarity=0.329 Sum_probs=31.0
Q ss_pred CcccCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccc
Q 042404 21 CLFNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYF 83 (311)
Q Consensus 21 ~~~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c 83 (311)
.+..+++|++|+|++|.+...+.+.++++|+.|+++++.+.. ++..+..+|+|+.|++.+|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYN 103 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEE
T ss_pred HHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCC
Confidence 455555666666665555432244455556666666555542 2233334455555555543
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.11 E-value=5.1e-07 Score=79.72 Aligned_cols=146 Identities=20% Similarity=0.127 Sum_probs=83.6
Q ss_pred CceEEEEEeCCCeeeecCCCcc--cCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLF--NCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLES 77 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~--~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 77 (311)
++++|+|..... ..+|...+ .+++|++|+|++|.+. .+..+.++++|+.|+|+++.+..- ....+.++++|+.
T Consensus 40 ~l~~L~Ls~N~l--~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~ 116 (361)
T 2xot_A 40 YTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALEV 116 (361)
T ss_dssp TCSEEECCSSCC--CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCE
T ss_pred CCCEEECCCCCC--CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcCCCE
Confidence 355566554432 34554433 6778888888877765 334567778888888888776542 1223567788888
Q ss_pred cccccccceeE----EEeCCCceEEEeece-eeeee---e---cCCCCcceeEEEEEEccccchhhcccccchHHHHhcC
Q 042404 78 LSLSYFDSLDL----NICAPELKYLYLEGE-FKDIH---L---ESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGG 146 (311)
Q Consensus 78 L~l~~c~~~~~----~i~~~~L~~L~i~~~-~~~~~---i---~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 146 (311)
|+|.++....+ .-..++|+.|.+.++ ...+. + ..+++|+.++++.+...... ...+..
T Consensus 117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-----------~~~~~~ 185 (361)
T 2xot_A 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP-----------LTDLQK 185 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC-----------HHHHHH
T ss_pred EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC-----------HHHhhh
Confidence 88877754321 112367778877774 22221 1 34777777777665543211 122344
Q ss_pred CCc--ceEEEEeeeEEE
Q 042404 147 VPH--LEKLVGYIYFTK 161 (311)
Q Consensus 147 l~~--l~~L~l~~~~~~ 161 (311)
++. ++.|++..+.+.
T Consensus 186 l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 186 LPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SCHHHHTTEECCSSCEE
T ss_pred ccHhhcceEEecCCCcc
Confidence 444 366777665543
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.09 E-value=2.9e-07 Score=72.59 Aligned_cols=127 Identities=13% Similarity=0.055 Sum_probs=66.1
Q ss_pred ccCCCCcEEEccceeeCCCCCCCCCC-cccEEEeeeeeeChHHHHHHHhcCccccccccccccceeE----EEeCCCceE
Q 042404 23 FNCRKLTRLELFRCEFDPPLTFTGFP-CLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDL----NICAPELKY 97 (311)
Q Consensus 23 ~~~~~L~~L~L~~~~l~~~~~~~~l~-~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~----~i~~~~L~~ 97 (311)
.++.+|+.|+|++|.+...+.+..+. +|+.|+++++.+++- ..+..+++|+.|+++++....+ ....++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 44556666666665554322333333 566666666555432 2244556666666665543221 112355666
Q ss_pred EEeece-eeee----eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEE
Q 042404 98 LYLEGE-FKDI----HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFT 160 (311)
Q Consensus 98 L~i~~~-~~~~----~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~ 160 (311)
|.+.++ ...+ .+..+|+|+.++++.+...... ......+..+++|+.|++..+..
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~--------~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK--------HYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST--------THHHHHHHHCTTCSEETTEECCH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcH--------hHHHHHHHHCCccceeCCCcCCH
Confidence 666553 1111 2446777888877665443210 01122456778888888876653
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.08 E-value=8.1e-07 Score=71.24 Aligned_cols=107 Identities=20% Similarity=0.203 Sum_probs=72.0
Q ss_pred eeecCCCcccCCCCcEEEccceeeC-CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeE----E
Q 042404 15 WFRVPSCLFNCRKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDL----N 89 (311)
Q Consensus 15 ~~~lp~~~~~~~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~----~ 89 (311)
...+|..+. ++|++|+|+++.+. .|..+.++++|+.|+|+++.++.- ....+.++++|+.|+|+++....+ .
T Consensus 22 l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f 98 (193)
T 2wfh_A 22 LKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNRLRCIPPRTF 98 (193)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred CCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCccCEeCHHHh
Confidence 346676554 57888888888775 445677788888888888877642 222356788888888888764331 1
Q ss_pred EeCCCceEEEeece-eeee---eecCCCCcceeEEEEEE
Q 042404 90 ICAPELKYLYLEGE-FKDI---HLESTPLLVSMSIAMYM 124 (311)
Q Consensus 90 i~~~~L~~L~i~~~-~~~~---~i~~~p~L~~l~l~~~~ 124 (311)
...++|+.|.+.++ ...+ .+..+++|+.++++.+.
T Consensus 99 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 99 DGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 13467888888875 2222 24568889998887654
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.04 E-value=3.3e-07 Score=72.30 Aligned_cols=57 Identities=18% Similarity=0.135 Sum_probs=27.0
Q ss_pred CCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccc
Q 042404 27 KLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFD 84 (311)
Q Consensus 27 ~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~ 84 (311)
+|++|+|++|.+...+.+..+++|++|+++++.+..- ...++..+|+|+.|++.++.
T Consensus 43 ~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~ 99 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELILTNNS 99 (176)
T ss_dssp CCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEECCSCC
T ss_pred CCCEEECCCCCCCcccccccCCCCCEEECCCCccccc-CcchhhcCCCCCEEECCCCc
Confidence 5555555555444223444555555555555544321 11123445555555555543
No 125
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.03 E-value=5.4e-08 Score=86.39 Aligned_cols=99 Identities=11% Similarity=0.026 Sum_probs=59.8
Q ss_pred CCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecC
Q 042404 111 STPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFE 190 (311)
Q Consensus 111 ~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~ 190 (311)
..++|++++++.+...+. ....+...+...++|+.|++..+.+...........+ ...++|++|.+.. +.-
T Consensus 153 ~~~~L~~L~Ls~n~l~~~-------~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L-~~~~~L~~L~Ls~-N~i 223 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAA-------GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQL-DRNRQLQELNVAY-NGA 223 (372)
T ss_dssp TTCCCCEEECCSSCCHHH-------HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHG-GGCSCCCEEECCS-SCC
T ss_pred cCCccceeeCCCCCCChH-------HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHH-hcCCCcCeEECCC-CCC
Confidence 456788887776653210 1123445557788899999887754321110001111 2356788888843 323
Q ss_pred CHHHHHHHHHHHhcCCCcceEEEEeccC
Q 042404 191 DMKEILVVIRLITNSPNLKELHISGSSN 218 (311)
Q Consensus 191 ~~~~~~~l~~~l~~~p~L~~L~i~~~~~ 218 (311)
...+...++..+..+|+|++|++..+..
T Consensus 224 ~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 224 GDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred CHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 3345667888888999999999987754
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.00 E-value=1.5e-06 Score=69.58 Aligned_cols=141 Identities=10% Similarity=-0.022 Sum_probs=86.5
Q ss_pred CcEEEccceeeC-CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeEEEeCCCceEEEeeceeee
Q 042404 28 LTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDLNICAPELKYLYLEGEFKD 106 (311)
Q Consensus 28 L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~i~~~~L~~L~i~~~~~~ 106 (311)
-++++++++.+. .|..+ .++|+.|+|.++.++. ++..+.++++|+.|++.++.... ...
T Consensus 12 ~~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~----------------i~~ 71 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRIST----------------LSN 71 (193)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCC----------------CCT
T ss_pred CCEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCE----------------eCH
Confidence 367888888876 34333 4789999999998763 33456788899999988765211 111
Q ss_pred eeecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCccccccceEEEee
Q 042404 107 IHLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQ 186 (311)
Q Consensus 107 ~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~ 186 (311)
-.+..+++|+.++++.+...... ...+..+++|+.|++..+.+..+.. .....+++|+.|.+..
T Consensus 72 ~~f~~l~~L~~L~Ls~N~l~~i~-----------~~~f~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 72 QSFSNMTQLLTLILSYNRLRCIP-----------PRTFDGLKSLRLLSLHGNDISVVPE-----GAFNDLSALSHLAIGA 135 (193)
T ss_dssp TTTTTCTTCCEEECCSSCCCBCC-----------TTTTTTCTTCCEEECCSSCCCBCCT-----TTTTTCTTCCEEECCS
T ss_pred hHccCCCCCCEEECCCCccCEeC-----------HHHhCCCCCCCEEECCCCCCCeeCh-----hhhhcCccccEEEeCC
Confidence 12346677777777665543211 2235788889999998887664332 2222477888888843
Q ss_pred eecCCHHHHHHHHHHHhc
Q 042404 187 VSFEDMKEILVVIRLITN 204 (311)
Q Consensus 187 ~~~~~~~~~~~l~~~l~~ 204 (311)
..+.-.-++.++...++.
T Consensus 136 N~~~C~c~l~~l~~~~~~ 153 (193)
T 2wfh_A 136 NPLYCDCNMQWLSDWVKS 153 (193)
T ss_dssp SCEECSGGGHHHHHHHHH
T ss_pred CCeecCCcCHHHHHHHHh
Confidence 222111233455555543
No 127
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.96 E-value=8.4e-07 Score=77.96 Aligned_cols=197 Identities=13% Similarity=0.068 Sum_probs=111.3
Q ss_pred CCceEEEEEeCCCeeeecCCC-cccCCCCcEEEccceee-C--CCCCCCCCCcccEE-EeeeeeeChHHHHHHHhcCccc
Q 042404 1 NDIRELVLELGEGEWFRVPSC-LFNCRKLTRLELFRCEF-D--PPLTFTGFPCLRSL-NLHQVLVAPEAIESLISSCPLL 75 (311)
Q Consensus 1 ~~v~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~l-~--~~~~~~~l~~L~~L-~L~~~~~~~~~l~~ll~~cp~L 75 (311)
+++++|+|..... ..+|.. +.++++|++|+|++|.+ . ++..+.++++|+.+ .+.++.+..- .+..+.++++|
T Consensus 30 ~~l~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l-~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCCC--SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE-CTTSBCCCTTC
T ss_pred CCCCEEEccCCcC--CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc-Cchhhhhcccc
Confidence 3688999887754 478875 56799999999999875 3 23456778887764 4444544431 12336789999
Q ss_pred ccccccccccee----EEEeCCCceEEEeecee--eeee---ecCC-CCcceeEEEEEEccccchhh---------c--c
Q 042404 76 ESLSLSYFDSLD----LNICAPELKYLYLEGEF--KDIH---LEST-PLLVSMSIAMYMTDDIAEHF---------E--Q 134 (311)
Q Consensus 76 e~L~l~~c~~~~----~~i~~~~L~~L~i~~~~--~~~~---i~~~-p~L~~l~l~~~~~~~~~~~~---------~--~ 134 (311)
+.|++.++.... ......++..+.+.++. ..+. +... ..++.++++.+......... . .
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~ 186 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTT
T ss_pred ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhcc
Confidence 999999875322 12234456666665531 1111 1122 34555555543322211100 0 0
Q ss_pred -cccchH-HHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCCCcceEE
Q 042404 135 -SSSCNF-LKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSPNLKELH 212 (311)
Q Consensus 135 -~~~~~~-~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p~L~~L~ 212 (311)
..-..+ ...++++++|+.|+++.+.+..+ |. ..|.+|++|.+... ... ..++ -++++++|+.++
T Consensus 187 ~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l-----p~---~~~~~L~~L~~l~~--~~l---~~lP-~l~~l~~L~~l~ 252 (350)
T 4ay9_X 187 NNNLEELPNDVFHGASGPVILDISRTRIHSL-----PS---YGLENLKKLRARST--YNL---KKLP-TLEKLVALMEAS 252 (350)
T ss_dssp CTTCCCCCTTTTTTEECCSEEECTTSCCCCC-----CS---SSCTTCCEEECTTC--TTC---CCCC-CTTTCCSCCEEE
T ss_pred CCcccCCCHHHhccCcccchhhcCCCCcCcc-----Ch---hhhccchHhhhccC--CCc---CcCC-CchhCcChhhCc
Confidence 000111 23467888899999988765532 21 23677777776221 111 1222 256777888887
Q ss_pred EE
Q 042404 213 IS 214 (311)
Q Consensus 213 i~ 214 (311)
+.
T Consensus 253 l~ 254 (350)
T 4ay9_X 253 LT 254 (350)
T ss_dssp CS
T ss_pred CC
Confidence 75
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.90 E-value=1.8e-06 Score=69.07 Aligned_cols=67 Identities=18% Similarity=0.148 Sum_probs=49.0
Q ss_pred eeecCCCcccCCCCcEEEccceeeCC-CC--CCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccc
Q 042404 15 WFRVPSCLFNCRKLTRLELFRCEFDP-PL--TFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFD 84 (311)
Q Consensus 15 ~~~lp~~~~~~~~L~~L~L~~~~l~~-~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~ 84 (311)
...+|..+.. +|++|+|+++.+.. ++ .+..+++|++|+|+++.++.- .+..+.++++|+.|++.++.
T Consensus 20 l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 20 LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCC
T ss_pred cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCc
Confidence 3567776654 89999999988752 22 267889999999999887653 23346678888888888765
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.90 E-value=2.7e-06 Score=68.01 Aligned_cols=80 Identities=24% Similarity=0.243 Sum_probs=59.9
Q ss_pred CceEEEEEeCCCeeeecCCC--cccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccc
Q 042404 2 DIRELVLELGEGEWFRVPSC--LFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLES 77 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~--~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 77 (311)
++++|++.-... ..+|.. +..+++|++|+|++|.+. .|..+.++++|+.|+|+++.+..- ....+.+.++|+.
T Consensus 30 ~l~~L~l~~n~i--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~ 106 (192)
T 1w8a_A 30 HTTELLLNDNEL--GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI-SNKMFLGLHQLKT 106 (192)
T ss_dssp TCSEEECCSCCC--CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEE-CSSSSTTCTTCCE
T ss_pred CCCEEECCCCcC--CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCcc-CHHHhcCCCCCCE
Confidence 466777655533 355553 778999999999999886 356788999999999999988753 1223557888888
Q ss_pred ccccccc
Q 042404 78 LSLSYFD 84 (311)
Q Consensus 78 L~l~~c~ 84 (311)
|++.++.
T Consensus 107 L~L~~N~ 113 (192)
T 1w8a_A 107 LNLYDNQ 113 (192)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 8888765
No 130
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.90 E-value=5.7e-06 Score=77.33 Aligned_cols=157 Identities=11% Similarity=0.034 Sum_probs=102.4
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLS 81 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 81 (311)
++++|+|.-+.. ..+| ..+++|++|+|++|.+...+.+.+ +|+.|+|+++.++. ++. .+++|+.|+++
T Consensus 81 ~L~~L~Ls~N~l--~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls 148 (571)
T 3cvr_A 81 QITVLEITQNAL--ISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTM--LPE---LPALLEYINAD 148 (571)
T ss_dssp TCSEEECCSSCC--SCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSC--CCC---CCTTCCEEECC
T ss_pred CCCEEECcCCCC--cccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCC--CCC---cCccccEEeCC
Confidence 578888766644 3677 447899999999998863332433 99999999998876 332 68999999999
Q ss_pred cccceeEEEeCCCceEEEeece-eeeeeecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEE
Q 042404 82 YFDSLDLNICAPELKYLYLEGE-FKDIHLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFT 160 (311)
Q Consensus 82 ~c~~~~~~i~~~~L~~L~i~~~-~~~~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~ 160 (311)
++....+....++|+.|.+.++ ...+.. -.++|+.++++.+.....+. +. ..+....+.++.|++..+.+
T Consensus 149 ~N~l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~~~L~~L~Ls~N~L~~lp~-~~-------~~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 149 NNQLTMLPELPTSLEVLSVRNNQLTFLPE-LPESLEALDVSTNLLESLPA-VP-------VRNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp SSCCSCCCCCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSSCCC-CC---------------CCEEEECCSSCC
T ss_pred CCccCcCCCcCCCcCEEECCCCCCCCcch-hhCCCCEEECcCCCCCchhh-HH-------HhhhcccccceEEecCCCcc
Confidence 9874433224579999999986 222221 12899999998775442210 00 01112223349999988866
Q ss_pred EEeecCCCCCCCCccccccceEEEe
Q 042404 161 KYLSIGDDPGRLPITYNHLKVIELY 185 (311)
Q Consensus 161 ~~l~~~~~~~~~~~~f~~L~~L~l~ 185 (311)
.. .|..+. .+++|+.|.+.
T Consensus 220 ~~-----lp~~l~-~l~~L~~L~L~ 238 (571)
T 3cvr_A 220 TH-----IPENIL-SLDPTCTIILE 238 (571)
T ss_dssp CC-----CCGGGG-GSCTTEEEECC
T ss_pred ee-----cCHHHh-cCCCCCEEEee
Confidence 53 343344 47889999884
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.89 E-value=1.8e-06 Score=80.91 Aligned_cols=105 Identities=15% Similarity=0.065 Sum_probs=58.4
Q ss_pred CCcEEEccceeeCCCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeEEEeCCCceEEEeeceeee
Q 042404 27 KLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDLNICAPELKYLYLEGEFKD 106 (311)
Q Consensus 27 ~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~i~~~~L~~L~i~~~~~~ 106 (311)
.|++|+|++|.+...+.+.++++|+.|+|+++.+. .++..+.++++|+.|+|+++.. .. .+
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l----------~~------lp- 502 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNAL----------EN------VD- 502 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCC----------CC------CG-
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCC----------CC------Cc-
Confidence 46777777776653333666777777777777665 2333456677777777766531 11 11
Q ss_pred eeecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEE
Q 042404 107 IHLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTK 161 (311)
Q Consensus 107 ~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~ 161 (311)
.+..+++|+.++++.+...+.. ....++.+++|+.|+++++.+.
T Consensus 503 -~l~~l~~L~~L~Ls~N~l~~~~----------~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNRLQQSA----------AIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp -GGTTCSSCCEEECCSSCCCSSS----------TTGGGGGCTTCCEEECTTSGGG
T ss_pred -ccCCCCCCcEEECCCCCCCCCC----------CcHHHhcCCCCCEEEecCCcCC
Confidence 2345566666666554432210 0223456667777777666543
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.85 E-value=3e-06 Score=66.68 Aligned_cols=67 Identities=22% Similarity=0.189 Sum_probs=47.5
Q ss_pred eeecCCCcccCCCCcEEEccceeeCC--CCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccc
Q 042404 15 WFRVPSCLFNCRKLTRLELFRCEFDP--PLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFD 84 (311)
Q Consensus 15 ~~~lp~~~~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~ 84 (311)
...+|..+. ++|++|+|+++.+.. +..+.++++|+.|+++++.+..- ....+..+++|+.|++.++.
T Consensus 19 l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp CSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred CccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCC
Confidence 345665544 689999999888752 33457889999999998877642 22335678888888888764
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.83 E-value=4.9e-06 Score=65.43 Aligned_cols=80 Identities=21% Similarity=0.231 Sum_probs=59.3
Q ss_pred CceEEEEEeCCCeeeecCCC-cccCCCCcEEEccceeeCC-C-CCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccc
Q 042404 2 DIRELVLELGEGEWFRVPSC-LFNCRKLTRLELFRCEFDP-P-LTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESL 78 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 78 (311)
++++|++.-... ..+|.. +..+++|++|+|++|.+.. + ..+.++++|+.|+++++.++.- ....+..+++|+.|
T Consensus 29 ~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 29 SATRLELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL-PNGVFDKLTQLKEL 105 (177)
T ss_dssp TCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred CCcEEEeCCCcc--cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc-CHHHhhCCcccCEE
Confidence 567777665543 356655 4678999999999998863 3 3467899999999999988642 22335678889999
Q ss_pred cccccc
Q 042404 79 SLSYFD 84 (311)
Q Consensus 79 ~l~~c~ 84 (311)
++.++.
T Consensus 106 ~l~~N~ 111 (177)
T 2o6r_A 106 ALDTNQ 111 (177)
T ss_dssp ECCSSC
T ss_pred ECcCCc
Confidence 988764
No 134
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.79 E-value=4.6e-06 Score=65.33 Aligned_cols=83 Identities=11% Similarity=0.104 Sum_probs=62.1
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEcccee-eCCC--CCCCC----CCcccEEEeeeee-eChHHHHHHHhcCc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCE-FDPP--LTFTG----FPCLRSLNLHQVL-VAPEAIESLISSCP 73 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~-l~~~--~~~~~----l~~L~~L~L~~~~-~~~~~l~~ll~~cp 73 (311)
.+++|+++-+......+ ..+..|++|++|+|++|. +++. ..++. .++|+.|+|++|. +++..+.. ++.||
T Consensus 62 ~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~-L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA-LHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH-GGGCT
T ss_pred eEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH-HhcCC
Confidence 47899998665422233 235689999999999995 5531 11233 3579999999996 99988987 46899
Q ss_pred cccccccccccce
Q 042404 74 LLESLSLSYFDSL 86 (311)
Q Consensus 74 ~Le~L~l~~c~~~ 86 (311)
+|++|++.+|..+
T Consensus 140 ~L~~L~L~~c~~I 152 (176)
T 3e4g_A 140 NLKYLFLSDLPGV 152 (176)
T ss_dssp TCCEEEEESCTTC
T ss_pred CCCEEECCCCCCC
Confidence 9999999999754
No 135
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.72 E-value=7.5e-06 Score=72.16 Aligned_cols=80 Identities=15% Similarity=0.034 Sum_probs=42.9
Q ss_pred CCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecC
Q 042404 111 STPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFE 190 (311)
Q Consensus 111 ~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~ 190 (311)
..|+|+.+.+..+...+. ....+.. ...+++|+.|+++.+.+...........+ ..+++|+.|.+. .+.-
T Consensus 250 ~~p~Lr~L~L~~~~i~~~-------~~~~la~-a~~~~~L~~LdLs~n~L~d~G~~~L~~~L-~~l~~L~~L~L~-~n~i 319 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNV-------VVEMFLE-SDILPQLETMDISAGVLTDEGARLLLDHV-DKIKHLKFINMK-YNYL 319 (362)
T ss_dssp TCTTCCEEEEESCTTHHH-------HHHHHHH-CSSGGGCSEEECCSSCCBHHHHHHHHTTH-HHHTTCSEEECC-SBBC
T ss_pred CCCCcCEEeCCCCCCchH-------HHHHHHh-CccCCCCCEEECCCCCCChHHHHHHHhhc-ccCCcceEEECC-CCcC
Confidence 578999998876543210 0011111 13678999999987654321111111122 357899999994 3333
Q ss_pred CHHHHHHHHH
Q 042404 191 DMKEILVVIR 200 (311)
Q Consensus 191 ~~~~~~~l~~ 200 (311)
....+..+..
T Consensus 320 ~d~~~~~l~~ 329 (362)
T 2ra8_A 320 SDEMKKELQK 329 (362)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 4334444444
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.71 E-value=1e-05 Score=63.25 Aligned_cols=67 Identities=19% Similarity=0.199 Sum_probs=48.9
Q ss_pred eeecCCCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccc
Q 042404 15 WFRVPSCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFD 84 (311)
Q Consensus 15 ~~~lp~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~ 84 (311)
...+|..+. ++|++|+|++|.+. .|..+.++++|+.|+|+++.++.- ....+.++++|+.|+|.++.
T Consensus 21 l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 21 LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCc
Confidence 356777664 78899999998875 345577889999999999887642 22335677888888888764
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.71 E-value=5.9e-06 Score=77.33 Aligned_cols=111 Identities=21% Similarity=0.236 Sum_probs=81.8
Q ss_pred ceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeC-CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccc
Q 042404 3 IRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLS 81 (311)
Q Consensus 3 v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 81 (311)
++.|+|..+.. ..+|. +..+++|+.|+|++|.+. .|..+.++++|+.|+|+++.++. ++ -+.++++|+.|+++
T Consensus 443 L~~L~Ls~n~l--~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 443 VRVLHLAHKDL--TVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLC 516 (567)
T ss_dssp CSEEECTTSCC--SSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECC
T ss_pred ceEEEecCCCC--CCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECC
Confidence 56666654433 45786 889999999999999886 56678899999999999998876 44 47889999999999
Q ss_pred cccceeE-----EEeCCCceEEEeece-eeee------eecCCCCcceeE
Q 042404 82 YFDSLDL-----NICAPELKYLYLEGE-FKDI------HLESTPLLVSMS 119 (311)
Q Consensus 82 ~c~~~~~-----~i~~~~L~~L~i~~~-~~~~------~i~~~p~L~~l~ 119 (311)
++....+ ....++|+.|.+.++ +... .+..+|+|+.++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 8864322 123578999999985 2221 122478888774
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.69 E-value=6.4e-05 Score=65.21 Aligned_cols=164 Identities=12% Similarity=0.150 Sum_probs=95.1
Q ss_pred CCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccc-----------------ccc
Q 042404 25 CRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSY-----------------FDS 85 (311)
Q Consensus 25 ~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~-----------------c~~ 85 (311)
|++|+.|.|.. .+. ...+|.+|++|+.+.+..+.+..- -...+.+|..+..+.+.. |..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i-~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNL-LPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEE-CTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcccc-chhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 89999999998 443 345688999999999988753210 001234455555554433 111
Q ss_pred ee--EEE---------------------------------------eCCCceEEEeece-eeee---eecCCCCcceeEE
Q 042404 86 LD--LNI---------------------------------------CAPELKYLYLEGE-FKDI---HLESTPLLVSMSI 120 (311)
Q Consensus 86 ~~--~~i---------------------------------------~~~~L~~L~i~~~-~~~~---~i~~~p~L~~l~l 120 (311)
+. +.+ .+++|+.+.+.++ ...+ .+.++++|+++.+
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 11 011 1578999998874 3333 4668899999987
Q ss_pred EEEEccccchhhcccccchHHHHhcCCCcce-EEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHH
Q 042404 121 AMYMTDDIAEHFEQSSSCNFLKILGGVPHLE-KLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVI 199 (311)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~-~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~ 199 (311)
...- .... ...|.++++|+ .+.+.. .++.+..+ .-..+++|++|.+..-...... .
T Consensus 258 ~~ni-~~I~-----------~~aF~~~~~L~~~l~l~~-~l~~I~~~-----aF~~c~~L~~l~l~~n~i~~I~-----~ 314 (329)
T 3sb4_A 258 PHNL-KTIG-----------QRVFSNCGRLAGTLELPA-SVTAIEFG-----AFMGCDNLRYVLATGDKITTLG-----D 314 (329)
T ss_dssp CTTC-CEEC-----------TTTTTTCTTCCEEEEECT-TCCEECTT-----TTTTCTTEEEEEECSSCCCEEC-----T
T ss_pred Cccc-ceeh-----------HHHhhCChhccEEEEEcc-cceEEchh-----hhhCCccCCEEEeCCCccCccc-----h
Confidence 5531 1100 22367888998 998865 34333322 1124677777776211111110 2
Q ss_pred HHHhcCCCcceEEE
Q 042404 200 RLITNSPNLKELHI 213 (311)
Q Consensus 200 ~~l~~~p~L~~L~i 213 (311)
..+.+|++|+.++.
T Consensus 315 ~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 315 ELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTCTTCCCCEEEC
T ss_pred hhhcCCcchhhhcc
Confidence 35788999998864
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.69 E-value=1.7e-05 Score=61.96 Aligned_cols=80 Identities=19% Similarity=0.153 Sum_probs=59.5
Q ss_pred CceEEEEEeCCCeeeec-CCCcccCCCCcEEEccceeeC-CC-CCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccc
Q 042404 2 DIRELVLELGEGEWFRV-PSCLFNCRKLTRLELFRCEFD-PP-LTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESL 78 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~l~-~~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 78 (311)
++++|+|.-... ..+ |..+..+++|++|+|++|.+. .+ ..+.++++|+.|+|+++.+..- ....+..+++|+.|
T Consensus 31 ~l~~L~L~~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L 107 (170)
T 3g39_A 31 TTQVLYLYDNQI--TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI-PRGAFDNLKSLTHI 107 (170)
T ss_dssp TCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred CCcEEEcCCCcC--CccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe-CHHHhcCCCCCCEE
Confidence 567777765543 345 556778999999999999986 33 3467899999999999988652 22336678888888
Q ss_pred cccccc
Q 042404 79 SLSYFD 84 (311)
Q Consensus 79 ~l~~c~ 84 (311)
+|.++.
T Consensus 108 ~L~~N~ 113 (170)
T 3g39_A 108 WLLNNP 113 (170)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 888753
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.68 E-value=1.2e-05 Score=63.20 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=48.6
Q ss_pred eeecCCCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccc
Q 042404 15 WFRVPSCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFD 84 (311)
Q Consensus 15 ~~~lp~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~ 84 (311)
...+|..+. ++|++|+|++|.+. .|..+.++++|+.|+|+++.+..- ....+.++++|+.|+|.++.
T Consensus 24 l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 24 LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCc
Confidence 356777664 78999999988876 345577889999999998887652 12234567888888887764
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.67 E-value=1.9e-05 Score=62.03 Aligned_cols=80 Identities=16% Similarity=0.152 Sum_probs=59.7
Q ss_pred CceEEEEEeCCCeeeec-CCCcccCCCCcEEEccceeeC-CCC-CCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccc
Q 042404 2 DIRELVLELGEGEWFRV-PSCLFNCRKLTRLELFRCEFD-PPL-TFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESL 78 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~l~-~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 78 (311)
++++|+|.-... ..+ |..+..+++|++|+|++|.+. .|+ .+.++++|+.|+|+++.+..- ....+..+++|+.|
T Consensus 34 ~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 34 DKQRLWLNNNQI--TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI-PRGAFDNLKSLTHI 110 (174)
T ss_dssp TCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEE
T ss_pred CCcEEEeCCCCc--cccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee-CHHHhccccCCCEE
Confidence 577777766543 345 556778999999999999986 333 357899999999999987642 22336678888888
Q ss_pred cccccc
Q 042404 79 SLSYFD 84 (311)
Q Consensus 79 ~l~~c~ 84 (311)
.+.++.
T Consensus 111 ~L~~N~ 116 (174)
T 2r9u_A 111 YLYNNP 116 (174)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 888754
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.57 E-value=3.4e-06 Score=81.34 Aligned_cols=108 Identities=15% Similarity=0.102 Sum_probs=74.7
Q ss_pred ecCCCcccCCCCcEEEccceeeC-CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeE---EEeC
Q 042404 17 RVPSCLFNCRKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDL---NICA 92 (311)
Q Consensus 17 ~lp~~~~~~~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~---~i~~ 92 (311)
..|..+..+++|+.|+|++|.+. .|..+..+++|+.|+|+++.++ .++.-+..+++|+.|+|+++....+ ....
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGG
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCCccChhhcCC
Confidence 34566777889999999998875 4555668899999999998877 2444467899999999998864321 1234
Q ss_pred CCceEEEeece-eeee--eecCCCCcceeEEEEEEcc
Q 042404 93 PELKYLYLEGE-FKDI--HLESTPLLVSMSIAMYMTD 126 (311)
Q Consensus 93 ~~L~~L~i~~~-~~~~--~i~~~p~L~~l~l~~~~~~ 126 (311)
++|++|.+.++ +..+ .+..+++|+.++++.+...
T Consensus 293 ~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp TTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 68899998885 3322 3567889999988776654
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.53 E-value=1.1e-05 Score=64.68 Aligned_cols=78 Identities=18% Similarity=0.041 Sum_probs=61.3
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeCC-CCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFDP-PLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSL 80 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l 80 (311)
++++|+|.-+.. ..+| .+..+++|+.|+|++|.+.. |..+..+++|+.|+++++.+.+ ++ -+..+++|+.|++
T Consensus 49 ~L~~L~ls~n~l--~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 49 ACKHLALSTNNI--EKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LS-GIEKLVNLRVLYM 122 (198)
T ss_dssp TCSEEECSEEEE--SCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC--HH-HHHHHHHSSEEEE
T ss_pred CCCEEECCCCCC--cccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc--CC-ccccCCCCCEEEC
Confidence 578888765532 3477 88899999999999999873 4334457899999999999876 33 3678999999999
Q ss_pred ccccc
Q 042404 81 SYFDS 85 (311)
Q Consensus 81 ~~c~~ 85 (311)
.++..
T Consensus 123 ~~N~i 127 (198)
T 1ds9_A 123 SNNKI 127 (198)
T ss_dssp SEEEC
T ss_pred CCCcC
Confidence 98863
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.34 E-value=4.3e-05 Score=66.72 Aligned_cols=86 Identities=21% Similarity=0.183 Sum_probs=63.8
Q ss_pred eeecCCCcccCCCCcEEEccc-eeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccccccccccceeEE--
Q 042404 15 WFRVPSCLFNCRKLTRLELFR-CEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFDSLDLN-- 89 (311)
Q Consensus 15 ~~~lp~~~~~~~~L~~L~L~~-~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~-- 89 (311)
...+|. +..+++|+.|+|++ |.+. .+..+.++++|+.|+|+++.+..- .+..+.++++|+.|+|+++..-.+.
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCCccceeCHH
Confidence 457899 88999999999996 8876 334588999999999999988763 2334678999999999987632211
Q ss_pred -EeCCCceEEEeec
Q 042404 90 -ICAPELKYLYLEG 102 (311)
Q Consensus 90 -i~~~~L~~L~i~~ 102 (311)
+...+|+.|.+.+
T Consensus 99 ~~~~~~L~~l~l~~ 112 (347)
T 2ifg_A 99 TVQGLSLQELVLSG 112 (347)
T ss_dssp TTCSCCCCEEECCS
T ss_pred HcccCCceEEEeeC
Confidence 1122377777766
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.25 E-value=2.9e-05 Score=74.93 Aligned_cols=97 Identities=23% Similarity=0.218 Sum_probs=52.6
Q ss_pred CceEEEEEeCCCeeeecCCCcccCCCCcEEEccceeeC-CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccc
Q 042404 2 DIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSL 80 (311)
Q Consensus 2 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l 80 (311)
+++.|+|.-... ..+|..++.+++|++|+|++|.+. .|..+.++++|+.|+|++|.++ .++.-+.++++|+.|.|
T Consensus 225 ~L~~L~Ls~n~l--~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 225 LWHALDLSNLQI--FNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCEEECTTSCC--SCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEEC
T ss_pred CCcEEECCCCCC--CCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEEC
Confidence 345555543322 356666666666666666666654 3444556666666666666655 23333555666666666
Q ss_pred ccccceeEE---EeCCCceEEEeec
Q 042404 81 SYFDSLDLN---ICAPELKYLYLEG 102 (311)
Q Consensus 81 ~~c~~~~~~---i~~~~L~~L~i~~ 102 (311)
.+|..-.+. ...++|+.|.+.+
T Consensus 301 ~~N~l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 301 FDNMVTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred CCCCCCccChhhhcCCCccEEeCCC
Confidence 665421110 1224566666655
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.15 E-value=8.7e-05 Score=64.37 Aligned_cols=82 Identities=20% Similarity=0.120 Sum_probs=48.1
Q ss_pred CCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCccccccc-eEEEeeeecC
Q 042404 112 TPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLK-VIELYQVSFE 190 (311)
Q Consensus 112 ~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~-~L~l~~~~~~ 190 (311)
+++|+.+++..+..... -...+.++++|+.+++..+ ++.+..+ .-..+++|+ .+.+.. ...
T Consensus 225 ~~~L~~l~L~~n~i~~I-----------~~~aF~~~~~L~~l~l~~n-i~~I~~~-----aF~~~~~L~~~l~l~~-~l~ 286 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTI-----------PDFTFAQKKYLLKIKLPHN-LKTIGQR-----VFSNCGRLAGTLELPA-SVT 286 (329)
T ss_dssp CTTCCEEECTTBCCCEE-----------CTTTTTTCTTCCEEECCTT-CCEECTT-----TTTTCTTCCEEEEECT-TCC
T ss_pred cCCCeEEECCCCCccee-----------cHhhhhCCCCCCEEECCcc-cceehHH-----HhhCChhccEEEEEcc-cce
Confidence 56677666654322111 0234688999999999765 4444322 122456677 777721 111
Q ss_pred CHHHHHHH-HHHHhcCCCcceEEEEecc
Q 042404 191 DMKEILVV-IRLITNSPNLKELHISGSS 217 (311)
Q Consensus 191 ~~~~~~~l-~~~l~~~p~L~~L~i~~~~ 217 (311)
.+ ...+.+|++|+.+++....
T Consensus 287 ------~I~~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 287 ------AIEFGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp ------EECTTTTTTCTTEEEEEECSSC
T ss_pred ------EEchhhhhCCccCCEEEeCCCc
Confidence 11 2457899999999986543
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.64 E-value=0.0005 Score=59.89 Aligned_cols=79 Identities=22% Similarity=0.173 Sum_probs=57.4
Q ss_pred CceEEEEEe-CCCeeeecC-CCcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCccccc
Q 042404 2 DIRELVLEL-GEGEWFRVP-SCLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLES 77 (311)
Q Consensus 2 ~v~~L~l~~-~~~~~~~lp-~~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 77 (311)
++++|+|.- ... ..+| ..+..+++|+.|+|++|.+. +|..+.++++|+.|+|+++.+..- ...++...+ |+.
T Consensus 32 ~L~~L~l~~~n~l--~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~-L~~ 107 (347)
T 2ifg_A 32 NLTELYIENQQHL--QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL-SWKTVQGLS-LQE 107 (347)
T ss_dssp CCSEEECCSCSSC--CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC-CSTTTCSCC-CCE
T ss_pred CeeEEEccCCCCC--CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcccee-CHHHcccCC-ceE
Confidence 577888763 543 4566 45778999999999999886 455678999999999999988642 112233344 999
Q ss_pred ccccccc
Q 042404 78 LSLSYFD 84 (311)
Q Consensus 78 L~l~~c~ 84 (311)
|.|.++.
T Consensus 108 l~l~~N~ 114 (347)
T 2ifg_A 108 LVLSGNP 114 (347)
T ss_dssp EECCSSC
T ss_pred EEeeCCC
Confidence 9998653
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.54 E-value=0.00021 Score=63.12 Aligned_cols=102 Identities=21% Similarity=0.188 Sum_probs=68.6
Q ss_pred CceEEEEEeCCCee---eecCCCc-ccCCCCcEEEccceeeCC------CCCCCCCCcccEEEeeeeeeChHH---HHHH
Q 042404 2 DIRELVLELGEGEW---FRVPSCL-FNCRKLTRLELFRCEFDP------PLTFTGFPCLRSLNLHQVLVAPEA---IESL 68 (311)
Q Consensus 2 ~v~~L~l~~~~~~~---~~lp~~~-~~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~~~~~~---l~~l 68 (311)
++++|+|..+.... ..+...+ ..+++|++|+|++|.++. +..+...++|++|+|++|.+++.. +...
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 46778876554311 1222222 246789999999998752 122346889999999999988754 4455
Q ss_pred HhcCcccccccccccccee-----E---EEeCCCceEEEeece
Q 042404 69 ISSCPLLESLSLSYFDSLD-----L---NICAPELKYLYLEGE 103 (311)
Q Consensus 69 l~~cp~Le~L~l~~c~~~~-----~---~i~~~~L~~L~i~~~ 103 (311)
+..+++|++|+|.+|...+ + -...++|++|++.++
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 6778999999999986422 1 013467888888775
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.50 E-value=0.0014 Score=58.39 Aligned_cols=33 Identities=9% Similarity=-0.023 Sum_probs=16.6
Q ss_pred CCCcEEEccceeeC-CCCCCCCCCcccEEEeeee
Q 042404 26 RKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQV 58 (311)
Q Consensus 26 ~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~ 58 (311)
.+|+.+.|...--. ...++.+|++|+++.|..+
T Consensus 157 ~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n 190 (401)
T 4fdw_A 157 STVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKT 190 (401)
T ss_dssp CCCCEEECCTTCCEECSSTTTTCTTCCEEECTTS
T ss_pred CCceEEEeCCCccEehHHHhhCcccCCeeecCCC
Confidence 35666666542111 2234556666666666543
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.49 E-value=0.00024 Score=56.26 Aligned_cols=102 Identities=13% Similarity=0.046 Sum_probs=68.9
Q ss_pred CceEEEEEeC-CC---eeeecCCCcccCCCCcEEEccceeeCCC------CCCCCCCcccEEEeeeeeeChHH---HHHH
Q 042404 2 DIRELVLELG-EG---EWFRVPSCLFNCRKLTRLELFRCEFDPP------LTFTGFPCLRSLNLHQVLVAPEA---IESL 68 (311)
Q Consensus 2 ~v~~L~l~~~-~~---~~~~lp~~~~~~~~L~~L~L~~~~l~~~------~~~~~l~~L~~L~L~~~~~~~~~---l~~l 68 (311)
.+++|+|.-+ .. ....+...+..+++|++|+|++|.+.+. ..+...+.|++|+|+++.+.+.. +...
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~ 116 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence 5778887654 32 1134555666789999999999988632 12335678999999999998865 4444
Q ss_pred HhcCcccccccc--cccccee--------EEEeCCCceEEEeece
Q 042404 69 ISSCPLLESLSL--SYFDSLD--------LNICAPELKYLYLEGE 103 (311)
Q Consensus 69 l~~cp~Le~L~l--~~c~~~~--------~~i~~~~L~~L~i~~~ 103 (311)
+..++.|++|+| .++..-. .-...++|++|.+.++
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 667889999999 6564211 1112357777777664
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.46 E-value=0.00061 Score=57.12 Aligned_cols=58 Identities=24% Similarity=0.171 Sum_probs=31.2
Q ss_pred CCCCcEEEccceeeCCCC----CCCCCCcccEEEeeeeeeChH-HHHHHHhcCcccccccccccc
Q 042404 25 CRKLTRLELFRCEFDPPL----TFTGFPCLRSLNLHQVLVAPE-AIESLISSCPLLESLSLSYFD 84 (311)
Q Consensus 25 ~~~L~~L~L~~~~l~~~~----~~~~l~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~l~~c~ 84 (311)
+++|+.|+|++|.+.... .+..+++|+.|+|+++.+.+- .+.. +.+. +|++|.|.++.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~-l~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IKGL-KLEELWLDGNS 231 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG-GTTS-CCSEEECTTST
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh-cccC-CcceEEccCCc
Confidence 456666666666654321 122566666666666666542 2322 2223 66666666543
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.93 E-value=0.0065 Score=47.81 Aligned_cols=60 Identities=10% Similarity=0.102 Sum_probs=31.5
Q ss_pred cCCCCcEEEccce-eeCC------CCCCCCCCcccEEEeeeeeeChHH---HHHHHhcCccccccccccc
Q 042404 24 NCRKLTRLELFRC-EFDP------PLTFTGFPCLRSLNLHQVLVAPEA---IESLISSCPLLESLSLSYF 83 (311)
Q Consensus 24 ~~~~L~~L~L~~~-~l~~------~~~~~~l~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c 83 (311)
.+++|++|+|++| .+.+ ...+...++|++|+|+++.+.++. +...+..++.|++|+|.+|
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 4566666666666 5532 111234456666666666665532 3333444555555555554
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.50 E-value=0.011 Score=52.66 Aligned_cols=171 Identities=15% Similarity=0.251 Sum_probs=91.7
Q ss_pred ecCC-CcccCCCCcEEEccceeeC--CCCCCCCCCcccEEEeeeee--eChHHHHHHHhcCcccccccccccc-------
Q 042404 17 RVPS-CLFNCRKLTRLELFRCEFD--PPLTFTGFPCLRSLNLHQVL--VAPEAIESLISSCPLLESLSLSYFD------- 84 (311)
Q Consensus 17 ~lp~-~~~~~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~--~~~~~l~~ll~~cp~Le~L~l~~c~------- 84 (311)
.++. ++..|.+|+.++|..+.+. ....+. +.+|+.+.|.... +... .+.+|++|+.+.+...-
T Consensus 170 ~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~l~~I~~~----aF~~~~~L~~l~l~~~l~~I~~~a 244 (401)
T 4fdw_A 170 QLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVTLKEIGSQ----AFLKTSQLKTIEIPENVSTIGQEA 244 (401)
T ss_dssp EECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTTCCEECTT----TTTTCTTCCCEECCTTCCEECTTT
T ss_pred EehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCchheehhh----HhhCCCCCCEEecCCCccCccccc
Confidence 3443 4557899999999877654 223343 5788888886431 3332 25678888888886421
Q ss_pred ----cee-EEE-------------eCCCceEEEeeceee------ee---eecCCCCcceeEEEEEEccccchhhccccc
Q 042404 85 ----SLD-LNI-------------CAPELKYLYLEGEFK------DI---HLESTPLLVSMSIAMYMTDDIAEHFEQSSS 137 (311)
Q Consensus 85 ----~~~-~~i-------------~~~~L~~L~i~~~~~------~~---~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~ 137 (311)
.+. +.+ .+++|+.+.+.+... .+ .+.++++|+.+.+... ....
T Consensus 245 F~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I--------- 314 (401)
T 4fdw_A 245 FRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRIL--------- 314 (401)
T ss_dssp TTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEE---------
T ss_pred cccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEE---------
Confidence 011 111 224566666554311 11 2446667776665421 0000
Q ss_pred chHHHHhcCCCcceEEEEeeeEEEEeecCCCCCCCCccccccceEEEeeeecCCHHHHHHHHHHHhcCC-CcceEEEEec
Q 042404 138 CNFLKILGGVPHLEKLVGYIYFTKYLSIGDDPGRLPITYNHLKVIELYQVSFEDMKEILVVIRLITNSP-NLKELHISGS 216 (311)
Q Consensus 138 ~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~l~~~l~~~p-~L~~L~i~~~ 216 (311)
-...+.++.+|+.+.+..+ ++.+..+. .. .+ +|+++.+........ ....+.++| .+.++++-..
T Consensus 315 --~~~aF~~c~~L~~l~lp~~-l~~I~~~a----F~-~~-~L~~l~l~~n~~~~l-----~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 315 --GQGLLGGNRKVTQLTIPAN-VTQINFSA----FN-NT-GIKEVKVEGTTPPQV-----FEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp --CTTTTTTCCSCCEEEECTT-CCEECTTS----SS-SS-CCCEEEECCSSCCBC-----CCSSCCCSCTTCCEEEECGG
T ss_pred --hhhhhcCCCCccEEEECcc-ccEEcHHh----CC-CC-CCCEEEEcCCCCccc-----ccccccCCCCCccEEEeCHH
Confidence 0223678899999998543 33333221 12 35 788888843211111 112345664 7888888644
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.10 E-value=0.011 Score=49.36 Aligned_cols=40 Identities=30% Similarity=0.378 Sum_probs=31.9
Q ss_pred CCCCcccEEEeeeeeeCh-HHHHHHHhcCcccccccccccc
Q 042404 45 TGFPCLRSLNLHQVLVAP-EAIESLISSCPLLESLSLSYFD 84 (311)
Q Consensus 45 ~~l~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l~~c~ 84 (311)
.++++|++|+|+++.+.+ ..++..+..+|+|+.|+|+++.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~ 207 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE 207 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc
Confidence 368899999999998876 3355667789999999998775
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=87.37 E-value=0.25 Score=43.52 Aligned_cols=15 Identities=7% Similarity=-0.077 Sum_probs=9.5
Q ss_pred hcCCCcceEEEEeee
Q 042404 144 LGGVPHLEKLVGYIY 158 (311)
Q Consensus 144 l~~l~~l~~L~l~~~ 158 (311)
+.++.+|+.+++..+
T Consensus 353 F~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 353 FSNCTALNNIEYSGS 367 (394)
T ss_dssp GTTCTTCCEEEESSC
T ss_pred hhCCCCCCEEEECCc
Confidence 456666777666554
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=86.54 E-value=0.62 Score=33.97 Aligned_cols=43 Identities=21% Similarity=0.239 Sum_probs=32.1
Q ss_pred ecCCCcccCCCCcEEEccceeeC-C-CCCCCCCCcccEEEeeeeeeC
Q 042404 17 RVPSCLFNCRKLTRLELFRCEFD-P-PLTFTGFPCLRSLNLHQVLVA 61 (311)
Q Consensus 17 ~lp~~~~~~~~L~~L~L~~~~l~-~-~~~~~~l~~L~~L~L~~~~~~ 61 (311)
.+|..+. .+|+.|+|++|.+. . +..+..+++|++|.|.++.+.
T Consensus 24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5665433 36899999999886 3 334678899999999998764
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=77.82 E-value=0.51 Score=37.27 Aligned_cols=78 Identities=9% Similarity=0.080 Sum_probs=55.1
Q ss_pred cCCCCcEEEccce-eeCCC------CCCCCCCcccEEEeeeeeeChH---HHHHHHhcCcccccccccccccee------
Q 042404 24 NCRKLTRLELFRC-EFDPP------LTFTGFPCLRSLNLHQVLVAPE---AIESLISSCPLLESLSLSYFDSLD------ 87 (311)
Q Consensus 24 ~~~~L~~L~L~~~-~l~~~------~~~~~l~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~l~~c~~~~------ 87 (311)
+.++|+.|+|+++ .+.+. .++..-..|+.|+|+++.+.+. .+...+..-..|++|+|..+..-.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 4579999999975 66531 1233457899999999999874 567777788999999999876321
Q ss_pred ---EEEeCCCceEEEeec
Q 042404 88 ---LNICAPELKYLYLEG 102 (311)
Q Consensus 88 ---~~i~~~~L~~L~i~~ 102 (311)
+. ...+|+.|.+..
T Consensus 119 a~aL~-~N~tL~~L~L~n 135 (197)
T 1pgv_A 119 LRSTL-VTQSIVEFKADN 135 (197)
T ss_dssp HHHTT-TTCCCSEEECCC
T ss_pred HHHHh-hCCceeEEECCC
Confidence 11 124577777754
No 158
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=77.34 E-value=0.58 Score=36.96 Aligned_cols=57 Identities=21% Similarity=0.309 Sum_probs=39.7
Q ss_pred CCCcccEEEeeee-eeChHH---HHHHHhcCcccccccccccccee---------EEEeCCCceEEEeece
Q 042404 46 GFPCLRSLNLHQV-LVAPEA---IESLISSCPLLESLSLSYFDSLD---------LNICAPELKYLYLEGE 103 (311)
Q Consensus 46 ~l~~L~~L~L~~~-~~~~~~---l~~ll~~cp~Le~L~l~~c~~~~---------~~i~~~~L~~L~i~~~ 103 (311)
+-+.|+.|+|.++ .+.++. +...+..-..|+.|+|.+|..-+ +. .-.+|+.|.+.++
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~-~N~tL~~L~L~~N 108 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE-TSPSLRVLNVESN 108 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH-HCSSCCEEECCSS
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHh-cCCccCeEecCCC
Confidence 4578999999986 787754 44556667889999999886432 22 2246777777664
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=76.54 E-value=1.2 Score=39.12 Aligned_cols=95 Identities=19% Similarity=0.325 Sum_probs=56.3
Q ss_pred cccCCCCcEEEccceeeCCCCCCCCCCcccEEEeeeee--eChHHHHHHHhcCccccccccccc-ccee--EEEeCCCce
Q 042404 22 LFNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVL--VAPEAIESLISSCPLLESLSLSYF-DSLD--LNICAPELK 96 (311)
Q Consensus 22 ~~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~--~~~~~l~~ll~~cp~Le~L~l~~c-~~~~--~~i~~~~L~ 96 (311)
+..|..++.+.+....+.. ..+..+.+|+.+.+.... +.+. .+.+|++|+.+.|... ..++ ....+.+|+
T Consensus 272 F~~~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~ 346 (394)
T 4fs7_A 272 FYNCSGLKKVIYGSVIVPE-KTFYGCSSLTEVKLLDSVKFIGEE----AFESCTSLVSIDLPYLVEEIGKRSFRGCTSLS 346 (394)
T ss_dssp TTTCTTCCEEEECSSEECT-TTTTTCTTCCEEEECTTCCEECTT----TTTTCTTCCEECCCTTCCEECTTTTTTCTTCC
T ss_pred cccccccceeccCceeecc-ccccccccccccccccccceechh----hhcCCCCCCEEEeCCcccEEhHHhccCCCCCC
Confidence 3457777777776655443 346677888888775431 3332 2567888888887532 1111 112335677
Q ss_pred EEEeeceeeee---eecCCCCcceeEEE
Q 042404 97 YLYLEGEFKDI---HLESTPLLVSMSIA 121 (311)
Q Consensus 97 ~L~i~~~~~~~---~i~~~p~L~~l~l~ 121 (311)
.+.+......+ .+.++++|+++.+.
T Consensus 347 ~i~lp~~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 347 NINFPLSLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp EECCCTTCCEECTTTBTTCTTCCEEEEE
T ss_pred EEEECccccEehHHHhhCCCCCCEEEEC
Confidence 77665543332 46688999988874
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=70.57 E-value=1.4 Score=38.67 Aligned_cols=96 Identities=17% Similarity=0.308 Sum_probs=55.8
Q ss_pred cccCCCCcEEEccceeeC-CCCCCCCCCcccEEEeeee--eeChHHHHHHHhcCccccccccccc-ccee--EEEeCCCc
Q 042404 22 LFNCRKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQV--LVAPEAIESLISSCPLLESLSLSYF-DSLD--LNICAPEL 95 (311)
Q Consensus 22 ~~~~~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~L~l~~c-~~~~--~~i~~~~L 95 (311)
+.+|..|+.+.+...--. ...++.++.+|+++.|... .+.+. .+.+|.+|+++.|... ..++ ....+++|
T Consensus 284 F~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~----aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 284 FMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILDD----AFAGCEQLERIAIPSSVTKIPESAFSNCTAL 359 (394)
T ss_dssp TTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEEECTTCCBCCGGGGTTCTTC
T ss_pred cccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehHh----HhhCCCCCCEEEECcccCEEhHhHhhCCCCC
Confidence 456889999998753222 2345778899999998643 24433 3668999999998642 2222 22345688
Q ss_pred eEEEeeceeeee-eecCCCCcceeEEE
Q 042404 96 KYLYLEGEFKDI-HLESTPLLVSMSIA 121 (311)
Q Consensus 96 ~~L~i~~~~~~~-~i~~~p~L~~l~l~ 121 (311)
+.+.+.+....+ .+....+|+.+.+.
T Consensus 360 ~~i~~~~~~~~~~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 360 NNIEYSGSRSQWNAISTDSGLQNLPVA 386 (394)
T ss_dssp CEEEESSCHHHHHTCBCCCCC------
T ss_pred CEEEECCceeehhhhhccCCCCEEEeC
Confidence 888887742211 23355666666553
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=68.97 E-value=3.8 Score=35.74 Aligned_cols=121 Identities=14% Similarity=0.180 Sum_probs=77.5
Q ss_pred cccCCCCcEEEccceeeC-CCCCCCCCCcccEEEeeeeeeChHHHHHHHhcCcccccccccccc-cee--EEEeCCCceE
Q 042404 22 LFNCRKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVLVAPEAIESLISSCPLLESLSLSYFD-SLD--LNICAPELKY 97 (311)
Q Consensus 22 ~~~~~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~-~~~--~~i~~~~L~~ 97 (311)
+..|..|+.+.+...... ....+..++.|+...+....+.+. .+.+|++|+.+.+...- .++ ....+.+|+.
T Consensus 249 f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~----~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~ 324 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEK----TFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVS 324 (394)
T ss_dssp TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTT----TTTTCTTCCEEEECTTCCEECTTTTTTCTTCCE
T ss_pred ccccccceeEEcCCCcceeeccccccccccceeccCceeeccc----cccccccccccccccccceechhhhcCCCCCCE
Confidence 456889999998865433 234577889999998888776554 25689999999886421 111 1123457777
Q ss_pred EEeeceeeee---eecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEeee
Q 042404 98 LYLEGEFKDI---HLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGYIY 158 (311)
Q Consensus 98 L~i~~~~~~~---~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~ 158 (311)
+.+......+ .+.++.+|+.+.+...- .... ..-+.++++|+.+.+...
T Consensus 325 i~lp~~v~~I~~~aF~~c~~L~~i~lp~~l-~~I~-----------~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 325 IDLPYLVEEIGKRSFRGCTSLSNINFPLSL-RKIG-----------ANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ECCCTTCCEECTTTTTTCTTCCEECCCTTC-CEEC-----------TTTBTTCTTCCEEEEEGG
T ss_pred EEeCCcccEEhHHhccCCCCCCEEEECccc-cEeh-----------HHHhhCCCCCCEEEECCC
Confidence 7775543332 45678889988763211 0000 223678999999998643
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=65.02 E-value=2.2 Score=36.94 Aligned_cols=119 Identities=12% Similarity=0.169 Sum_probs=60.6
Q ss_pred cccCCCCcEEEccceeeC-CCCCCCCCCcccEEEeeeee--eChHHHHHHHhcCcccccccccccc-cee--EEEeCCCc
Q 042404 22 LFNCRKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVL--VAPEAIESLISSCPLLESLSLSYFD-SLD--LNICAPEL 95 (311)
Q Consensus 22 ~~~~~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~--~~~~~l~~ll~~cp~Le~L~l~~c~-~~~--~~i~~~~L 95 (311)
...+.+|+.+.+...... ....+.++..|+.+.+.... +... .+.+|..|+.+.+...- .+. ....+++|
T Consensus 213 f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~----aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 213 FSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKNVTSIGSF----LLQNCTALKTLNFYAKVKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTTCCEECTT----TTTTCTTCCEEEECCCCSEECTTTTTTCTTC
T ss_pred cccccccceeeeccceeEEccccccCCccceEEEcCCCccEeCcc----ccceeehhccccccccceecccccccccccc
Confidence 445677777777643211 22345567777777775431 2222 24567777777764321 000 11123456
Q ss_pred eEEEeece-eee---eeecCCCCcceeEEEEEEccccchhhcccccchHHHHhcCCCcceEEEEe
Q 042404 96 KYLYLEGE-FKD---IHLESTPLLVSMSIAMYMTDDIAEHFEQSSSCNFLKILGGVPHLEKLVGY 156 (311)
Q Consensus 96 ~~L~i~~~-~~~---~~i~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~ 156 (311)
+.+.+... ... -.+.++++|+.+.+...-. ... ..-+.++.+|+.+.+-
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~-~I~-----------~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTALK-TIQ-----------VYAFKNCKALSTISYP 341 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTTCC-EEC-----------TTTTTTCTTCCCCCCC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcccc-EEH-----------HHHhhCCCCCCEEEEC
Confidence 66665432 222 2345777888776632100 000 1225677788887774
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=61.82 E-value=4.5 Score=34.93 Aligned_cols=56 Identities=25% Similarity=0.443 Sum_probs=38.4
Q ss_pred cccCCCCcEEEccceeeC-CCCCCCCCCcccEEEeeeee---eChHHHHHHHhcCccccccccc
Q 042404 22 LFNCRKLTRLELFRCEFD-PPLTFTGFPCLRSLNLHQVL---VAPEAIESLISSCPLLESLSLS 81 (311)
Q Consensus 22 ~~~~~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~---~~~~~l~~ll~~cp~Le~L~l~ 81 (311)
+..|.+|+.+.+...--. ....+.++++|+.+.+.... +.+. .+.+|++|+++.|.
T Consensus 259 F~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~----aF~~c~~L~~i~lp 318 (379)
T 4h09_A 259 LQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPR----VFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTT----TTTTCTTCCEEECC
T ss_pred cceeehhccccccccceeccccccccccccccccccccccceehhh----hhcCCCCCCEEEcC
Confidence 345788998888654222 23457788999999987643 3333 35689999998885
No 164
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=27.34 E-value=51 Score=22.32 Aligned_cols=11 Identities=0% Similarity=0.051 Sum_probs=5.4
Q ss_pred cCCCCcEEEcc
Q 042404 24 NCRKLTRLELF 34 (311)
Q Consensus 24 ~~~~L~~L~L~ 34 (311)
.|.+|+.+.|-
T Consensus 18 ~c~~L~~i~iP 28 (100)
T 2lz0_A 18 GNTVIREITVQ 28 (100)
T ss_dssp TCTTCCCEEEC
T ss_pred CCCCCcEEEcC
Confidence 45555555444
No 165
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=23.32 E-value=60 Score=22.11 Aligned_cols=40 Identities=18% Similarity=0.283 Sum_probs=29.0
Q ss_pred ccceEEEEeccccc--hhHHHHH-HHHhhcccCCcccEEEEec
Q 042404 271 VLEIMSITPCTFVT--ERKVNML-IELVRFIRASPRAEIIFIQ 310 (311)
Q Consensus 271 ~Le~l~i~~~~~~~--~~~~~~~-~~l~~~~~~s~~~~~~~~~ 310 (311)
.|++++|.++..++ ...+++. ..+-.+++..|.++|.+..
T Consensus 18 qlk~l~~~yc~~~~sS~G~R~Fl~~~l~~~k~~NP~v~i~v~~ 60 (102)
T 1s3a_A 18 GLREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRE 60 (102)
T ss_dssp CEEEEEEECCSSSCCCHHHHHHHHHTHHHHHHHSTTCCEEEEC
T ss_pred ceeEEEEEEcCCCCCchhHHHHHHHhhHHHHHHCCCceEEEEE
Confidence 59999999987643 4455554 4566888889999888753
No 166
>4a5z_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; 2.30A {Homo sapiens}
Probab=21.70 E-value=56 Score=24.53 Aligned_cols=40 Identities=8% Similarity=0.045 Sum_probs=27.6
Q ss_pred ceeEEEEEe-ecCC----cchHHHHHHHHccCcccceEEEEeccc
Q 042404 243 QLKLVKMTD-ISGV----PHEMELIKFLLSNSPVLEIMSITPCTF 282 (311)
Q Consensus 243 ~Lk~v~i~~-~~g~----~~~~~l~~~ll~~a~~Le~l~i~~~~~ 282 (311)
.++.|.|.. |--. .+-++|.+.++++++.++++.+.+.+.
T Consensus 34 ~~~~I~IeDPYIR~~hQi~NfvrF~Ellvk~~~~~~~I~L~T~~d 78 (163)
T 4a5z_A 34 TVTEVWIEDPYIRHTHQLYNFLRFCEMLIKRPCKVKTIHLLTSLD 78 (163)
T ss_dssp TCCEEEEECSCCCSHHHHHHHHHHHHHHHC--CCCCEEEEEECCC
T ss_pred CceEEEEECCccccHHHHHHHHHHHHHHHhcCCCccEEEEEeCCc
Confidence 577777775 2222 344678888899999999999988764
Done!