BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042406
(424 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 111/346 (32%), Positives = 172/346 (49%), Gaps = 44/346 (12%)
Query: 83 LVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLER--AGVFVIDADI 140
L+TG AGF+GS++ L K V+GLDNF ++ +L + R + E+ + I DI
Sbjct: 31 LITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDI 90
Query: 141 NDKSLLDKIFNVVA-FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP 199
+ LD N A +V+H AA V ++ +P + +NI GF+N+L + + Q
Sbjct: 91 RN---LDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ- 146
Query: 200 AIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFF 259
+ +A+SSS YG + +P E D +P S YA TK E A ++ YG S GLR+F
Sbjct: 147 SFTYAASSSTYGDHPGLPKVE-DTIGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRYF 205
Query: 260 TVYGPWGRPDMAYFF----FTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCL---- 311
V+G P+ AY +T +I+G VY DG + +RDF YI++ V+ L
Sbjct: 206 NVFGRRQDPNGAYAAVIPKWTSSMIQGD--DVYINGDGET-SRDFCYIENTVQANLLAAT 262
Query: 312 AGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKV----LP 367
AGLD A +++N+ +++L L L AE V P
Sbjct: 263 AGLD---------------ARNQVYNIAVGGRTSLNQLFFALRDGL---AENGVSYHREP 304
Query: 368 LPRN---GDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSY 410
+ R+ GDV+ + A+IS A + LGY P D+ G+ + WY+ +
Sbjct: 305 VYRDFREGDVRHSLADISKAAKLLGYAPKYDVSAGVALAMPWYIMF 350
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 30/341 (8%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGL-LERAGVFV-IDA 138
T L+TG AGF+GS++ L K V+GLDNF+ ++ +L + + + E+ F I+
Sbjct: 27 TWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEG 86
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
DI D + +++ V HV+H AA V ++ +P + +NI GF+N+L K++ Q
Sbjct: 87 DIRDLTTCEQVMKGV--DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ 144
Query: 199 PAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRF 258
+ +A+SSS YG + +P E++ P S YA TK E A Y YG GLR+
Sbjct: 145 -SFTYAASSSTYGDHPALPKVEEN-IGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRY 202
Query: 259 FTVYGPWGRPDMAYFF----FTRDIIRGKRITVYEAPDGASVARDFTYIDDIVK-GCLAG 313
F V+G P+ AY +T +++G VY DG + +RDF YID++++ L+
Sbjct: 203 FNVFGRRQDPNGAYAAVIPKWTAAMLKGD--DVYINGDGET-SRDFCYIDNVIQMNILSA 259
Query: 314 LDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLP---- 369
L A+ I+N+ ++ L + L + L +
Sbjct: 260 L------------AKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREF 307
Query: 370 RNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSY 410
R+GDV+ + A+++ A L Y P + GL+ + WY+ +
Sbjct: 308 RSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRF 348
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 30/341 (8%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGL-LERAGVFV-IDA 138
T L+TG AGF+GS++ L K V+GLDNF+ ++ +L + + + E+ F I+
Sbjct: 21 TWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEG 80
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
DI D + +++ V HV+H AA V ++ +P + +NI GF+N+L K++ Q
Sbjct: 81 DIRDLTTCEQVMKGV--DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ 138
Query: 199 PAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRF 258
+ +A+SSS YG + +P E++ P S YA TK E A Y YG GLR+
Sbjct: 139 -SFTYAASSSTYGDHPALPKVEEN-IGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRY 196
Query: 259 FTVYGPWGRPDMAYFF----FTRDIIRGKRITVYEAPDGASVARDFTYIDDIVK-GCLAG 313
F V+G P+ AY +T +++G VY DG + +RDF YID++++ L+
Sbjct: 197 FNVFGRRQDPNGAYAAVIPKWTAAMLKGD--DVYINGDGET-SRDFCYIDNVIQMNILSA 253
Query: 314 LDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLP---- 369
L A+ I+N+ ++ L + L + L +
Sbjct: 254 L------------AKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREF 301
Query: 370 RNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSY 410
R+GDV+ + A+++ A L Y P + GL+ + WY+ +
Sbjct: 302 RSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRF 342
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 30/341 (8%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGL-LERAGVFV-IDA 138
T L+TG AGF+GS++ L K V+GLDNF+ ++ +L + + + E+ F I+
Sbjct: 40 TWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEG 99
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
DI D + +++ V HV+H AA V ++ +P + +NI GF+N+L K++ Q
Sbjct: 100 DIRDLTTCEQVMKGV--DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ 157
Query: 199 PAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRF 258
+ +A+SSS YG + +P E++ P S YA TK E A Y YG GLR+
Sbjct: 158 -SFTYAASSSTYGDHPALPKVEEN-IGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRY 215
Query: 259 FTVYGPWGRPDMAYFF----FTRDIIRGKRITVYEAPDGASVARDFTYIDDIVK-GCLAG 313
F V+G P+ AY +T +++G VY DG + +RDF YID++++ L+
Sbjct: 216 FNVFGRRQDPNGAYAAVIPKWTAAMLKGD--DVYINGDGET-SRDFCYIDNVIQMNILSA 272
Query: 314 LDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLP---- 369
L A+ I+N+ ++ L + L + L +
Sbjct: 273 L------------AKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREF 320
Query: 370 RNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSY 410
R+GDV+ + A+++ A L Y P + GL+ + WY+ +
Sbjct: 321 RSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRF 361
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 30/341 (8%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGL-LERAGVFV-IDA 138
T L+TG AGF+GS++ L K V+GLDNF+ ++ +L + + + E+ F I+
Sbjct: 27 TWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEG 86
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
DI D + +++ V HV+H AA V ++ +P + +NI GF+N+L K++ Q
Sbjct: 87 DIRDLTTCEQVMKGV--DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ 144
Query: 199 PAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRF 258
+ +A+SSS YG + +P E++ P S YA TK E A Y YG GLR+
Sbjct: 145 -SFTYAASSSTYGDHPALPKVEEN-IGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRY 202
Query: 259 FTVYGPWGRPDMAYFF----FTRDIIRGKRITVYEAPDGASVARDFTYIDDIVK-GCLAG 313
F V+G P+ AY +T +++G VY DG + +RDF YID++++ L+
Sbjct: 203 FNVFGRRQDPNGAYAAVIPKWTAAMLKGD--DVYINGDGET-SRDFCYIDNVIQMNILSA 259
Query: 314 LDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLP---- 369
L A+ I+N+ ++ L + L + L +
Sbjct: 260 L------------AKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREF 307
Query: 370 RNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSY 410
R+GDV+ + A+++ A L Y P + GL+ + WY+ +
Sbjct: 308 RSGDVRASQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRF 348
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 104/346 (30%), Positives = 160/346 (46%), Gaps = 35/346 (10%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYET--SLKKARKGLLERAG--VFVID 137
VLVTG AG++GSH L L + G + +DNF+N + SL ++ + + E G V +
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEE 64
Query: 138 ADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDP 197
DI D+ L ++F +F V+H A V ++Q P Y N+ G + LLE K+
Sbjct: 65 MDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGV 124
Query: 198 QPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATK-KAGEAIAHAYNHIYGLSITGL 256
+ +V++SS++VYG + +P E T + Y +K E I ++ L
Sbjct: 125 K-NLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNVVLL 183
Query: 257 RFFTVYG----------PWGRPDMAYFFFTRDIIRGKRITV------YEAPDGASVARDF 300
R+F G P G P+ + ++ I G+R + Y+ DG V RD+
Sbjct: 184 RYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAI-GRREALNVFGNDYDTEDGTGV-RDY 241
Query: 301 TYIDDIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVK 360
++ D+ KG +A L RI+NLG T V ++V +EK K
Sbjct: 242 IHVVDLAKGHIAAL----------RKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKK 291
Query: 361 AETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRW 406
KV+ R GDV +AN SLAQ ELG+ L+ + RW
Sbjct: 292 IPYKVVA-RREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRW 336
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 103/346 (29%), Positives = 160/346 (46%), Gaps = 35/346 (10%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYET--SLKKARKGLLERAG--VFVID 137
VLVTG AG++GSH L L + G + +DNF+N + SL ++ + + E G V +
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEE 64
Query: 138 ADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDP 197
DI D+ L ++F +F V+H A + ++Q P Y N+ G + LLE K+
Sbjct: 65 MDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMKAHGV 124
Query: 198 QPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATK-KAGEAIAHAYNHIYGLSITGL 256
+ +V++SS++VYG + +P E T + Y +K E I ++ L
Sbjct: 125 K-NLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNVVLL 183
Query: 257 RFFTVYG----------PWGRPDMAYFFFTRDIIRGKRITV------YEAPDGASVARDF 300
R+F G P G P+ + ++ I G+R + Y+ DG V RD+
Sbjct: 184 RYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAI-GRREALNVFGNDYDTEDGTGV-RDY 241
Query: 301 TYIDDIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVK 360
++ D+ KG +A L RI+NLG T V ++V +EK K
Sbjct: 242 IHVVDLAKGHIAAL----------RKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKK 291
Query: 361 AETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRW 406
KV+ R GDV +AN SLAQ ELG+ L+ + RW
Sbjct: 292 IPYKVVA-RREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRW 336
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 104/346 (30%), Positives = 159/346 (45%), Gaps = 35/346 (10%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYET--SLKKARKGLLERAG--VFVID 137
VLVTG AG++GSH L L + G + +DNF+N + SL ++ + + E G V +
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEE 64
Query: 138 ADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDP 197
DI D+ L ++F +F V+H A V ++Q P Y N+ G + LLE K+
Sbjct: 65 MDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGV 124
Query: 198 QPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATK-KAGEAIAHAYNHIYGLSITGL 256
+ +V++SS++VYG + +P E T + Y +K E I + L
Sbjct: 125 K-NLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLL 183
Query: 257 RFFTVYG----------PWGRPDMAYFFFTRDIIRGKRITV------YEAPDGASVARDF 300
R+F G P G P+ + ++ I G+R + Y+ DG V RD+
Sbjct: 184 RYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAI-GRREALNVFGNDYDTEDGTGV-RDY 241
Query: 301 TYIDDIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVK 360
++ D+ KG +A L RI+NLG T V ++V +EK K
Sbjct: 242 IHVVDLAKGHIAAL----------RKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKK 291
Query: 361 AETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRW 406
KV+ R GDV +AN SLAQ ELG+ L+ + RW
Sbjct: 292 IPYKVVA-RREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRW 336
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 113/234 (48%), Gaps = 14/234 (5%)
Query: 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDAD 139
+ VLVTG AGF+GSH+ L RG V LDN ++ K GV D
Sbjct: 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPK---------GVPFFRVD 51
Query: 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP 199
+ DK +++ F THV H AAQA V+ ++++P E N+ G +NLLE C+ +
Sbjct: 52 LRDKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEK 111
Query: 200 AIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFF 259
+ ++ ++YG + +E+ +P S YAA+K A E Y YGL LR+
Sbjct: 112 LVFASTGGAIYGEVPEGERAEETWPPRPKSPYAASKAAFEHYLSVYGQSYGLKWVSLRYG 171
Query: 260 TVYGPWGRPD---MAYFFFTRDIIRGKRITVY--EAPDGASVARDFTYIDDIVK 308
VYGP P F +++G +T+Y + P RD+ Y+ D+ +
Sbjct: 172 NVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAE 225
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 153/348 (43%), Gaps = 41/348 (11%)
Query: 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAG----VFV 135
+ VLVTG +G++GSH + L + G V+ LDN N + L ++ER G FV
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLP-----VIERLGGKHPTFV 55
Query: 136 IDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSS 195
+ DI +++L+ +I + A V+H A V ++Q P Y ++N+ G + L+ +++
Sbjct: 56 -EGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA 114
Query: 196 DPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY-GLSIT 254
+ + +++SS++VYG N K+P+ E T P S Y +K E I SI
Sbjct: 115 NVK-NFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIA 173
Query: 255 GLRFFTVYG----------PWGRPDMAYFFFTRDIIRGKRITV------YEAPDGASVAR 298
LR+F G P G P+ + + + G+R ++ Y DG V R
Sbjct: 174 LLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQ-VAVGRRDSLAIFGNDYPTEDGTGV-R 231
Query: 299 DFTYIDDIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILK 358
D+ ++ D+ G + ++ I+NLG V +V+ K
Sbjct: 232 DYIHVMDLADGHVVAMEKLANKPG----------VHIYNLGAGVGNSVLDVVNAFSKACG 281
Query: 359 VKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRW 406
P R GD+ A+ S A REL + T L+ + W
Sbjct: 282 KPVNYHFAPR-REGDLPACWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 147/328 (44%), Gaps = 32/328 (9%)
Query: 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDAD 139
+ ++VTG AGF+GSH+ L + G V+ +DN L R+ + + + D
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDN--------LSSGRREFVNPSAELHVR-D 51
Query: 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP 199
+ D S I V F H AA VR + P + N+ N+LE + + +
Sbjct: 52 LKDYSWGAGIKGDVVF----HFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVR- 106
Query: 200 AIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFF 259
+V+ASSS+VYG +P E++ +P S+Y A K AGE + Y ++G+ +R+
Sbjct: 107 TVVFASSSTVYGDADVIPTPEEEPY-KPISVYGAAKAAGEVMCATYARLFGVRCLAVRYA 165
Query: 260 TVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAXX 319
V GP R + Y F + +R + V E + + + Y+ D V+ LA
Sbjct: 166 NVVGPRLRHGVIYDFIMK--LR-RNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWK---- 218
Query: 320 XXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRN-----GDV 374
A F N+GN V V + ++ ++L ++ E +++P + GDV
Sbjct: 219 -----KFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDV 273
Query: 375 QFTHANISLAQRELGYMPTTDLETGLKK 402
++ ++ + G+ PT +KK
Sbjct: 274 KYMTLAVTKLMKLTGWRPTMTSAEAVKK 301
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 139/326 (42%), Gaps = 37/326 (11%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
++L+ G AG++GSH L G V+ +DN +E ++ + K + D+
Sbjct: 3 SILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAK---------FYNGDL 53
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
DK+ L +F VMH AA + V +M+ P Y +N+ G + LLE
Sbjct: 54 RDKAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDK- 112
Query: 201 IVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFT 260
+++S+++ YG +E+ T+ P + Y TK A E + H Y+ L R+F
Sbjct: 113 FIFSSTAATYGEVDVDLITEETMTN-PTNTYGETKLAIEKMLHWYSQASNLRYKIFRYFN 171
Query: 261 VYG--PWG------RPDMAYFFFTRDIIRGKRITV------YEAPDGASVARDFTYIDDI 306
V G P G RP+ + G+R + Y PDG + RD+ +++D+
Sbjct: 172 VAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCI-RDYIHVEDL 230
Query: 307 VKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVL 366
V GL E +NLGN V +V + ++ + +V
Sbjct: 231 VAAHFLGL----------KDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVA 280
Query: 367 PLPRNGDVQFTHANISLAQRELGYMP 392
P R GD A+ A+ +LG+ P
Sbjct: 281 P-RRAGDPARLVASSQKAKEKLGWDP 305
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 154/348 (44%), Gaps = 41/348 (11%)
Query: 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAG----VFV 135
+ VLVTG +G++GSH + L + G V+ LDN N K++ ++ER G FV
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNS-----KRSVLPVIERLGGKHPTFV 55
Query: 136 IDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSS 195
+ DI +++L+ +I + A V+H A V ++Q P Y ++N+ G + L+ +++
Sbjct: 56 -EGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA 114
Query: 196 DPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY-GLSIT 254
+ + +++SS++VYG N K+P+ E T P S Y +K E I SI
Sbjct: 115 NVK-NFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIA 173
Query: 255 GLRFFTVYG----------PWGRPDMAYFFFTRDIIRGKRITV------YEAPDGASVAR 298
LR+F G P G P+ + + + G+R ++ Y DG V R
Sbjct: 174 LLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQ-VAVGRRDSLAIFGNDYPTEDGTGV-R 231
Query: 299 DFTYIDDIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILK 358
D+ ++ D+ G + ++ I+NLG V +V+ K
Sbjct: 232 DYIHVMDLADGHVVAMEKLANKPG----------VHIYNLGAGVGNSVLDVVNAFSKACG 281
Query: 359 VKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRW 406
P R GD+ A+ S A REL + T L+ + W
Sbjct: 282 KPVNYHFAPR-REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 154/348 (44%), Gaps = 41/348 (11%)
Query: 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAG----VFV 135
+ VLVTG +G++GSH + L + G V+ LDN N K++ ++ER G FV
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNS-----KRSVLPVIERLGGKHPTFV 55
Query: 136 IDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSS 195
+ DI +++L+ +I + A V+H A V ++Q P Y ++N+ G + L+ +++
Sbjct: 56 -EGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA 114
Query: 196 DPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY-GLSIT 254
+ + +++S+++VYG N K+P+ E T P S Y +K E I SI
Sbjct: 115 NVK-NFIFSSTATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIA 173
Query: 255 GLRFFTVYG----------PWGRPDMAYFFFTRDIIRGKRITV------YEAPDGASVAR 298
LR+F G P G P+ + + + G+R ++ Y DG V R
Sbjct: 174 LLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQ-VAVGRRDSLAIFGNDYPTEDGTGV-R 231
Query: 299 DFTYIDDIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILK 358
D+ ++ D+ G + ++ I+NLG V +V+ K
Sbjct: 232 DYIHVMDLADGHVVAMEKLANKPG----------VHIYNLGAGVGNSVLDVVNAFSKACG 281
Query: 359 VKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRW 406
P R GD+ A+ S A REL + T L+ + W
Sbjct: 282 KPVNYHFAPR-REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 153/348 (43%), Gaps = 41/348 (11%)
Query: 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAG----VFV 135
+ VLVTG +G++GSH + L + G V+ LDN N + L ++ER G FV
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLP-----VIERLGGKHPTFV 55
Query: 136 IDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSS 195
+ DI +++L+ +I + A V+H A V ++Q P Y ++N+ G + L+ +++
Sbjct: 56 -EGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA 114
Query: 196 DPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY-GLSIT 254
+ + +++S+++VYG N K+P+ E T P S Y +K E I SI
Sbjct: 115 NVK-NFIFSSAATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIA 173
Query: 255 GLRFFTVYG----------PWGRPDMAYFFFTRDIIRGKRITV------YEAPDGASVAR 298
LR+F G P G P+ + + + G+R ++ Y DG V R
Sbjct: 174 LLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQ-VAVGRRDSLAIFGNDYPTEDGTGV-R 231
Query: 299 DFTYIDDIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILK 358
D+ ++ D+ G + ++ I+NLG V +V+ K
Sbjct: 232 DYIHVMDLADGHVVAMEKLANKPG----------VHIYNLGAGVGNSVLDVVNAFSKACG 281
Query: 359 VKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRW 406
P R GD+ A+ S A REL + T L+ + W
Sbjct: 282 KPVNYHFAPR-REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 153/348 (43%), Gaps = 41/348 (11%)
Query: 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAG----VFV 135
+ VLVTG +G++GSH + L + G V+ LDN N K++ ++ER G FV
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNS-----KRSVLPVIERLGGKHPTFV 55
Query: 136 IDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSS 195
+ DI +++L+ +I + A V+H A V ++Q P Y ++N+ G + L+ +++
Sbjct: 56 -EGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA 114
Query: 196 DPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY-GLSIT 254
+ + +++S ++VYG N K+P+ E T P S Y +K E I SI
Sbjct: 115 NVK-NFIFSSVATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIA 173
Query: 255 GLRFFTVYG----------PWGRPDMAYFFFTRDIIRGKRITV------YEAPDGASVAR 298
LR+F G P G P+ + + + G+R ++ Y DG V R
Sbjct: 174 LLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQ-VAVGRRDSLAIFGNDYPTEDGTGV-R 231
Query: 299 DFTYIDDIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILK 358
D+ ++ D+ G + ++ I+NLG V +V+ K
Sbjct: 232 DYIHVMDLADGHVVAMEKLANKPG----------VHIYNLGAGVGNSVLDVVNAFSKACG 281
Query: 359 VKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRW 406
P R GD+ A+ S A REL + T L+ + W
Sbjct: 282 KPVNYHFAPR-REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 153/348 (43%), Gaps = 41/348 (11%)
Query: 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAG----VFV 135
+ VLVTG +G++GSH + L + G V+ LDN N K++ ++ER G FV
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNS-----KRSVLPVIERLGGKHPTFV 55
Query: 136 IDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSS 195
+ DI +++L+ +I + A V+H A V ++Q P Y ++N+ G + L+ +++
Sbjct: 56 -EGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA 114
Query: 196 DPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY-GLSIT 254
+ + +++SS++VYG K+P+ E T P S Y +K E I SI
Sbjct: 115 NVK-NFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIA 173
Query: 255 GLRFFTVYG----------PWGRPDMAYFFFTRDIIRGKRITV------YEAPDGASVAR 298
LR+F G P G P+ + + + G+R ++ Y DG V R
Sbjct: 174 LLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQ-VAVGRRDSLAIFGNDYPTEDGTGV-R 231
Query: 299 DFTYIDDIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILK 358
D+ ++ D+ G + ++ I+NLG V +V+ K
Sbjct: 232 DYIHVMDLADGHVVAMEKLANKPG----------VHIYNLGAGVGNSVLDVVNAFSKACG 281
Query: 359 VKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRW 406
P R GD+ A+ S A REL + T L+ + W
Sbjct: 282 KPVNYHFAPR-REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 90/348 (25%), Positives = 153/348 (43%), Gaps = 41/348 (11%)
Query: 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAG----VFV 135
+ VLVTG +G++GSH + L + G V+ LDN N + L ++ER G FV
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLP-----VIERLGGKHPTFV 55
Query: 136 IDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSS 195
+ DI +++L+ +I + A V+H A V ++Q P Y ++N+ G + L+ +++
Sbjct: 56 -EGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA 114
Query: 196 DPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY-GLSIT 254
+ + +++S+++VYG N K+P+ E T P S + +K E I SI
Sbjct: 115 NVK-NFIFSSAATVYGDNPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIA 173
Query: 255 GLRFFTVYG----------PWGRPDMAYFFFTRDIIRGKRITV------YEAPDGASVAR 298
LR+F G P G P+ + + + G+R ++ Y DG V R
Sbjct: 174 LLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQ-VAVGRRDSLAIFGNDYPTEDGTGV-R 231
Query: 299 DFTYIDDIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILK 358
D+ ++ D+ G + ++ I+NLG V +V+ K
Sbjct: 232 DYIHVMDLADGHVVAMEKLANKPG----------VHIYNLGAGVGNSVLDVVNAFSKACG 281
Query: 359 VKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRW 406
P R GD+ A+ S A REL + T L+ + W
Sbjct: 282 KPVNYHFAPR-REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/348 (25%), Positives = 152/348 (43%), Gaps = 41/348 (11%)
Query: 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAG----VFV 135
+ VLVTG +G++GSH + L + G V+ LDN N + L ++ER G FV
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLP-----VIERLGGKHPTFV 55
Query: 136 IDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSS 195
+ DI +++L+ +I + A V+H A V ++Q P Y ++N+ G + L+ +++
Sbjct: 56 -EGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA 114
Query: 196 DPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY-GLSIT 254
+ + +++S+++VYG K+P+ E T P S Y +K E I SI
Sbjct: 115 NVK-NFIFSSAATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIA 173
Query: 255 GLRFFTVYG----------PWGRPDMAYFFFTRDIIRGKRITV------YEAPDGASVAR 298
LR+F G P G P+ + + + G+R ++ Y DG V R
Sbjct: 174 LLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQ-VAVGRRDSLAIFGNDYPTEDGTGV-R 231
Query: 299 DFTYIDDIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILK 358
D+ ++ D+ G + ++ I+NLG V +V+ K
Sbjct: 232 DYIHVMDLADGHVVAMEKLANKPG----------VHIYNLGAGVGNSVLDVVNAFSKACG 281
Query: 359 VKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRW 406
P R GD+ A+ S A REL + T L+ + W
Sbjct: 282 KPVNYHFAPR-REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/348 (25%), Positives = 152/348 (43%), Gaps = 41/348 (11%)
Query: 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAG----VFV 135
+ VLVTG +G++GSH + L + G V+ LDN N + L ++ER G FV
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLP-----VIERLGGKHPTFV 55
Query: 136 IDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSS 195
+ DI +++L+ +I + A V+H A V ++Q P Y ++N+ G + L+ +++
Sbjct: 56 -EGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA 114
Query: 196 DPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY-GLSIT 254
+ + +++SS++VYG K+P+ E T P S + +K E I SI
Sbjct: 115 NVK-NFIFSSSATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIA 173
Query: 255 GLRFFTVYG----------PWGRPDMAYFFFTRDIIRGKRITV------YEAPDGASVAR 298
LR+F G P G P+ + + + G+R ++ Y DG V R
Sbjct: 174 LLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQ-VAVGRRDSLAIFGNDYPTEDGTGV-R 231
Query: 299 DFTYIDDIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILK 358
D+ ++ D+ G + ++ I+NLG V +V+ K
Sbjct: 232 DYIHVMDLADGHVVAMEKLANKPG----------VHIYNLGAGVGNSVLDVVNAFSKACG 281
Query: 359 VKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRW 406
P R GD+ A+ S A REL + T L+ + W
Sbjct: 282 KPVNYHFAPR-REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 156/336 (46%), Gaps = 34/336 (10%)
Query: 80 LTVLVTGAAGFVGSH-VSLALKKRGDG-VLGLDNFNNYYETSLKKARKGLLERAGVFVID 137
+ +LVTG GF+GS+ + L+K D V+ +D S K L + +
Sbjct: 4 MKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGY---GSNPANLKDLEDDPRYTFVK 60
Query: 138 ADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDP 197
D+ D L+ ++ V V+HLAA++ V ++ +P ++ SN+ G LLE+ + +P
Sbjct: 61 GDVADYELVKELVRKV--DGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENP 118
Query: 198 QPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLR 257
+ V S+ VYG K F+E DR P+S Y+ATK A + + + Y L+ + R
Sbjct: 119 EVRFVHVSTDEVYGDILKGSFTENDRL-MPSSPYSATKAASDMLVLGWTRTYNLNASITR 177
Query: 258 FFTVYGPWGRPDMAYFFFTRDIIR---GKRITVYEAPDGASVARDFTYIDDIVKGCLAGL 314
YGP+ P+ + IIR G +I +Y G +V RD+ Y++D V+ L
Sbjct: 178 CTNNYGPYQFPEK---LIPKTIIRASLGLKIPIYGT--GKNV-RDWLYVEDHVRAIELVL 231
Query: 315 DTAXXXXXXXXXXXXPAEFR-IFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNG- 372
E R I+N+ +V ++ +++ E L R G
Sbjct: 232 --------------LKGESREIYNISAGEEKTNLEVVKIILRLMGKGEELIELVEDRPGH 277
Query: 373 DVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYL 408
D++++ + + R+L + P + G+KK + WYL
Sbjct: 278 DLRYSLDSWKIT-RDLKWRPKYTFDEGIKKTIDWYL 312
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 152/348 (43%), Gaps = 41/348 (11%)
Query: 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAG----VFV 135
+ VLVTG +G++GSH + L + G V+ LDN N + L ++ER G FV
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLP-----VIERLGGKHPTFV 55
Query: 136 IDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSS 195
+ DI +++L+ +I + A V+H A V ++Q P Y ++N+ G + L+ +++
Sbjct: 56 -EGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA 114
Query: 196 DPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY-GLSIT 254
+ + +++S+++VYG K+P+ E T P S + +K E I SI
Sbjct: 115 NVK-NFIFSSAATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIA 173
Query: 255 GLRFFTVYG----------PWGRPDMAYFFFTRDIIRGKRITV------YEAPDGASVAR 298
LR+F G P G P+ + + + G+R ++ Y DG V R
Sbjct: 174 LLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQ-VAVGRRDSLAIFGNDYPTEDGTGV-R 231
Query: 299 DFTYIDDIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILK 358
D+ ++ D+ G + ++ I+NLG V +V+ K
Sbjct: 232 DYIHVMDLADGHVVAMEKLANKPG----------VHIYNLGAGVGNSVLDVVNAFSKACG 281
Query: 359 VKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRW 406
P R GD+ A+ S A REL + T L+ + W
Sbjct: 282 KPVNYHFAPR-REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 149/347 (42%), Gaps = 55/347 (15%)
Query: 80 LTVLVTGAAGFVGSHVSLALKKRG------DGVLGLDNFNNYYETSLKKARKGLLERAGV 133
+ +LVTG AGF+GSH L D V+ LD SL A RA +
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLD--------SLTYAGN----RANL 48
Query: 134 FVIDAD---------INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAG 184
+DAD I D LL + V ++H AA++ V ++ + + E+N+ G
Sbjct: 49 APVDADPRLRFVHGDIRDAGLLARELRGV--DAIVHFAAESHVDRSIAGASVFTETNVQG 106
Query: 185 FVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHA 244
LL+ C +V S++ VYG ++E +P S YAA+K + +A A
Sbjct: 107 TQTLLQ-CAVDAGVGRVVHVSTNQVYGSIDSGSWTESSPL-EPNSPYAASKAGSDLVARA 164
Query: 245 YNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYID 304
Y+ YGL + R YGP+ P+ F +++ G + +Y DGA+V R++ + D
Sbjct: 165 YHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYG--DGANV-REWVHTD 221
Query: 305 DIVKG---CLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKA 361
D +G LAG I+++G + L +L L
Sbjct: 222 DHCRGIALVLAGGRAG----------------EIYHIGGGLELTNRELTGILLDSLGADW 265
Query: 362 ETKVLPLPRNG-DVQFTHANISLAQRELGYMPTTDLETGLKKFVRWY 407
+ R G D++++ + +RELGY P GL + VRWY
Sbjct: 266 SSVRKVADRKGHDLRYSLDGGKI-ERELGYRPQVSFADGLARTVRWY 311
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 143/328 (43%), Gaps = 36/328 (10%)
Query: 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDAD 139
+ ++VTG AGF+GSH+ L + G V+ +D S + + D
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDIVQRDTGGSAELHVR-------------D 47
Query: 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP 199
+ D S I V F H AA VR + P + N+ N+LE + + +
Sbjct: 48 LKDYSWGAGIKGDVVF----HFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVR- 102
Query: 200 AIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFF 259
+V+ASSS+VYG +P E++ +P S+Y A K AGE + Y ++G+ +R+
Sbjct: 103 TVVFASSSTVYGDADVIPTPEEEPY-KPISVYGAAKAAGEVMCATYARLFGVRCLAVRYA 161
Query: 260 TVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAXX 319
V GP R + Y F + +R + V E + + + Y+ D V+ LA
Sbjct: 162 NVVGPRLRHGVIYDFIMK--LR-RNPNVLEVLGDGTQRKSYLYVRDAVEATLAAW----- 213
Query: 320 XXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRN-----GDV 374
A F N+GN V V + ++ ++L ++ E +++P + GDV
Sbjct: 214 ----KKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDV 269
Query: 375 QFTHANISLAQRELGYMPTTDLETGLKK 402
++ ++ + G+ PT +KK
Sbjct: 270 KYMTLAVTKLMKLTGWRPTMTSAEAVKK 297
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 148/347 (42%), Gaps = 55/347 (15%)
Query: 80 LTVLVTGAAGFVGSHVSLALKKRG------DGVLGLDNFNNYYETSLKKARKGLLERAGV 133
+ +LVTG AGF+GSH L D V+ LD SL A RA +
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLD--------SLTYAGN----RANL 48
Query: 134 FVIDAD---------INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAG 184
+DAD I D LL + V ++H AA++ V ++ + + E+N+ G
Sbjct: 49 APVDADPRLRFVHGDIRDAGLLARELRGV--DAIVHFAAESHVDRSIAGASVFTETNVQG 106
Query: 185 FVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHA 244
LL+ C +V S+ VYG ++E +P S YAA+K + +A A
Sbjct: 107 TQTLLQ-CAVDAGVGRVVHVSTDEVYGSIDSGSWTESSPL-EPNSPYAASKAGSDLVARA 164
Query: 245 YNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYID 304
Y+ YGL + R YGP+ P+ F +++ G + +Y DGA+V R++ + D
Sbjct: 165 YHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLY--GDGANV-REWVHTD 221
Query: 305 DIVKG---CLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKA 361
D +G LAG I+++G + L +L L
Sbjct: 222 DHCRGIALVLAGGRAG----------------EIYHIGGGLELTNRELTGILLDSLGADW 265
Query: 362 ETKVLPLPRNG-DVQFTHANISLAQRELGYMPTTDLETGLKKFVRWY 407
+ R G D++++ + +RELGY P GL + VRWY
Sbjct: 266 SSVRKVADRKGHDLRYSLDGGKI-ERELGYRPQVSFADGLARTVRWY 311
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 146/332 (43%), Gaps = 37/332 (11%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
+L+TG AGFVGSH++ L G V +DNF T K+ + + +I+ D+
Sbjct: 8 ILITGGAGFVGSHLTDKLMMDGHEVTVVDNFF----TGRKRNVEHWIGHENFELINHDV- 62
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
++ ++ + + HLA+ A M NP +++N G +N+L K + +
Sbjct: 63 ----VEPLY--IEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR--L 114
Query: 202 VWASSSSVYGVNKKVPFSE----KDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLR 257
+ AS+S VYG + P SE P + Y K+ E + +AY G+ + R
Sbjct: 115 LLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVAR 174
Query: 258 FFTVYGPWGRPDMAYFF--FTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLD 315
F +GP + F ++G+ +TVY + S R F Y+ D+V G +A ++
Sbjct: 175 IFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGS---GSQTRAFQYVSDLVNGLVALMN 231
Query: 316 TAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQ 375
+ NLGN + L++ ++ +E + L ++ D Q
Sbjct: 232 SNVSSP--------------VNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQD-DPQ 276
Query: 376 FTHANISLAQRELGYMPTTDLETGLKKFVRWY 407
+I A+ LG+ P LE GL K + ++
Sbjct: 277 KRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYF 308
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 142/327 (43%), Gaps = 36/327 (11%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
++VTG AGF+GSHV L + + V+ +DN ++ E + +A + ++ AD+
Sbjct: 4 IVVTGGAGFIGSHVVDKLSESNEIVV-IDNLSSGNEEFVNEAAR---------LVKADLA 53
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
+ D + V H+AA VR +NP+ +N+ LLE + + I
Sbjct: 54 ADDIKDYLKGA---EEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS-RI 109
Query: 202 VWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTV 261
V+ S+S+VYG K +P E D P SLY A+K A EA+ +Y H + + RF V
Sbjct: 110 VFTSTSTVYGEAKVIPTPE-DYPTHPISLYGASKLACEALIESYCHTFDMQAWIYRFANV 168
Query: 262 YGPWGRPDMAYFFFTRDIIRGKRI-TVYEAPDGASVARDFTYIDDIVKGCLAGLDTAXXX 320
G + Y F I++ KR E + + YI D V L GL
Sbjct: 169 IGRRSTHGVIYDF----IMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGL------ 218
Query: 321 XXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPR--NGDVQFTH 378
IFN+G+ + V R+ ++ + L + + R GDV
Sbjct: 219 -------RGDERVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVML 271
Query: 379 ANISLAQRELGYMPTTDLETGLKKFVR 405
+I +R LG+ P + E ++ VR
Sbjct: 272 LSIEKLKR-LGWKPRYNSEEAVRMAVR 297
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 152/351 (43%), Gaps = 39/351 (11%)
Query: 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVF 134
R+T +L+TG AGF+G H++ AL G+ V LD+ + K LE+ +
Sbjct: 3 RNTLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGK-FLEKPVLE 61
Query: 135 VIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKS 194
+ + D++D L V HLA+ V + + P Y++ N+ +LL C S
Sbjct: 62 LEERDLSDVRL------------VYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTS 108
Query: 195 SDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSIT 254
P +V S+ VYG +P E D P S YAA+K E +A A+
Sbjct: 109 VG-VPKVVVGSTCEVYGQADTLPTPE-DSPLSPRSPYAASKVGLEMVAGAHQRASVAPEV 166
Query: 255 GL-RFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAG 313
G+ RFF VYGP RPD +++ + V DG RDFTYI D+V +A
Sbjct: 167 GIVRFFNVYGPGERPDALVPRLCANLLTRNELPVEG--DGEQ-RRDFTYITDVVDKLVA- 222
Query: 314 LDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGD 373
P+ + N G+ + V+ ++ +L+ + P P N
Sbjct: 223 ----------LANRPLPS---VVNFGSGQSLSVNDVIRILQATSPAAEVARKQPRP-NEI 268
Query: 374 VQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNSASASPSRKKNF 424
+F A+ +L R++G G+++ +R L ++ S R++ F
Sbjct: 269 TEF-RADTALQTRQIGERSGG---IGIEEGIRLTLEWWQSRDLDDIRQRIF 315
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 91/352 (25%), Positives = 154/352 (43%), Gaps = 46/352 (13%)
Query: 82 VLVTGAAGFVGSH-VSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVID-AD 139
+L+TG AGF+GS V + + D V+ +D Y + A ER F + D
Sbjct: 4 ILITGGAGFIGSALVRYIINETSDAVVVVDKLT-YAGNLMSLAPVAQSER---FAFEKVD 59
Query: 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCK------ 193
I D++ L ++F VMHLAA++ V ++ P +++E+NI G LLE +
Sbjct: 60 ICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNAL 119
Query: 194 SSDPQPAIVW--ASSSSVYG-VNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYG 250
+ D + A + S+ VYG ++ F + P+S Y+A+K + + + A+ YG
Sbjct: 120 TEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYG 179
Query: 251 LSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGC 310
L YGP+ P+ + + GK + VY +G + RD+ Y++D +
Sbjct: 180 LPTLITNCSNNYGPYHFPEKLIPLMILNALAGKSLPVY--GNGQQI-RDWLYVEDHARAL 236
Query: 311 LAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVP----VSRLVSLLEKILKVKAE---- 362
T +N+G V + LLE++ K
Sbjct: 237 YCVATTGKVG-------------ETYNIGGHNERKNLDVVETICELLEELAPNKPHGVAH 283
Query: 363 -----TKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLS 409
T V P + D+++ + S RELG +P E+G++K V+WYL+
Sbjct: 284 YRDLITFVADRPGH-DLRYA-IDASKIARELGCVPQETFESGMRKTVQWYLA 333
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/332 (25%), Positives = 142/332 (42%), Gaps = 37/332 (11%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
+L+TG AGFVGSH++ L G V +DNF T K+ + + +I+ D+
Sbjct: 30 ILITGGAGFVGSHLTDKLXXDGHEVTVVDNFF----TGRKRNVEHWIGHENFELINHDV- 84
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
++ ++ + + HLA+ A NP +++N G +N L K + +
Sbjct: 85 ----VEPLY--IEVDQIYHLASPASPPNYXYNPIKTLKTNTIGTLNXLGLAKRVGAR--L 136
Query: 202 VWASSSSVYGVNKKVPFSEK----DRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLR 257
+ AS+S VYG + P SE P + Y K+ E +AY G+ + R
Sbjct: 137 LLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEGVEVRVAR 196
Query: 258 FFTVYGPWGRPDMAYFF--FTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLD 315
F +GP + F ++G+ +TVY + S R F Y+ D+V G +A +
Sbjct: 197 IFNTFGPRXHXNDGRVVSNFILQALQGEPLTVYGS---GSQTRAFQYVSDLVNGLVALXN 253
Query: 316 TAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQ 375
+ NLGN + L++ ++ +E + L ++ D Q
Sbjct: 254 SNVSSP--------------VNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQD-DPQ 298
Query: 376 FTHANISLAQRELGYMPTTDLETGLKKFVRWY 407
+I A+ LG+ P LE GL K + ++
Sbjct: 299 KRKPDIKKAKLXLGWEPVVPLEEGLNKAIHYF 330
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 145/328 (44%), Gaps = 22/328 (6%)
Query: 82 VLVTGAAGFVGSH-VSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
+LVTG AGF+GS+ V L+ + NF+ + K + + + + +I
Sbjct: 27 ILVTGGAGFIGSNFVHYXLQSYE--TYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEI 84
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
+ LL+ + +++ AA++ V +++NP + ++N+ G V LLE K P
Sbjct: 85 QNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKY-PHIK 143
Query: 201 IVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFT 260
+V S+ VYG K ++ P S Y+++K + + IA AY Y L + R
Sbjct: 144 LVQVSTDEVYGSLGKTGRFTEETPLAPNSPYSSSKASADXIALAYYKTYQLPVIVTRCSN 203
Query: 261 VYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAXXX 320
YGP+ P+ + + GK++ +Y DG +V RD+ ++ D C A +D
Sbjct: 204 NYGPYQYPEKLIPLXVTNALEGKKLPLY--GDGLNV-RDWLHVTD---HCSA-IDVVLHK 256
Query: 321 XXXXXXXXXPAEFRIFNL-GNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHA 379
++N+ GN V + ++ + K K + + + D ++
Sbjct: 257 GRVG---------EVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDRLGHDRRYA-I 306
Query: 380 NISLAQRELGYMPTTDLETGLKKFVRWY 407
N + E + P E GL++ V+WY
Sbjct: 307 NAEKXKNEFDWEPKYTFEQGLQETVQWY 334
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 144/350 (41%), Gaps = 34/350 (9%)
Query: 80 LTVLVTGAAGFVGSHV-SLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDA 138
+ +L+TG AGF+GS V +K D V+ +D Y +L+ + + E A
Sbjct: 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLT--YAGNLE-SLSDISESNRYNFEHA 57
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCK----- 193
DI D + + +IF VMHLAA++ V ++ P +++E+NI G LLE +
Sbjct: 58 DICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSA 117
Query: 194 -SSDPQPAIVW--ASSSSVYG-------VNKKV--PFSEKDRTDQPASLYAATKKAGEAI 241
D + + S+ VYG V V P + P+S Y+A+K + + +
Sbjct: 118 LGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHL 177
Query: 242 AHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFT 301
A+ YGL YGP+ P+ + + GK + +Y D RD+
Sbjct: 178 VRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQ---IRDWL 234
Query: 302 YIDDIVKGC--LAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKV 359
Y++D + + A +F + + V + S E+I V
Sbjct: 235 YVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYV 294
Query: 360 KAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLS 409
R G + + RELG+ P E+G++K V WYL+
Sbjct: 295 A--------DRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLA 336
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 90/340 (26%), Positives = 164/340 (48%), Gaps = 49/340 (14%)
Query: 81 TVLVTGAAGFVGSHVSLALKKR--GDGVLGLDN------FNNYYETSLKKARKGLLERAG 132
T+L+TG AGFVGS+++ ++ V+ LD F+N +SL K L+ G
Sbjct: 12 TILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHF-KNLIGFKG 70
Query: 133 VFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETC 192
VI ADIN+ L ++ + F ++ H AA + M N +++N F+NLLE
Sbjct: 71 E-VIAADINNPLDLRRL-EKLHFDYLFHQAAVSDT--TMLNQELVMKTNYQAFLNLLEIA 126
Query: 193 KSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGE--AIAHAYNHIYG 250
+S + +++ASS+ VYG N K P + + + P ++Y +K + ++H+ +++
Sbjct: 127 RSK--KAKVIYASSAGVYG-NTKAP-NVVGKNESPENVYGFSKLCMDEFVLSHSNDNVQ- 181
Query: 251 LSITGLRFFTVYGP--WGRPDMAYFFFTRDI--IRGKRITVYEAPDGASVARDFTYIDDI 306
GLR+F VYGP + + A + + K + ++E + RDF YI+D+
Sbjct: 182 ---VGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQ---LRDFVYIEDV 235
Query: 307 VKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVL 366
++ + + ++N+G + + +VS+L++ L + KV
Sbjct: 236 IQANVKAMKAQKSG--------------VYNVGYSQARSYNEIVSILKEHL---GDFKVT 278
Query: 367 PL--PRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFV 404
+ P + T A+I +L Y P DLE+G+K ++
Sbjct: 279 YIKNPYAFFQKHTQAHIEPTILDLDYTPLYDLESGIKDYL 318
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 151/354 (42%), Gaps = 47/354 (13%)
Query: 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFV 135
ST+G T+LVTG AG++GSH ++ L G V+ DN N ++ + K + + F
Sbjct: 3 STKG-TILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEK-ITGKTPAF- 59
Query: 136 IDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSS 195
+ D++D+ L +IF+ T +H AA V ++ P Y +N+ ++LL +
Sbjct: 60 HETDVSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRER 119
Query: 196 DPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASL---YAATKKAGEAIAHAYNHIY-GL 251
+ IV++SS++VYGV ++ P E P S Y TK E I
Sbjct: 120 AVK-RIVFSSSATVYGVPERSPIDET----FPLSATNPYGQTKLMAEQILRDVEAADPSW 174
Query: 252 SITGLRFFTVYG----------PWGRPDMAYFFFTRDII-RGKRITV----YEAPDGASV 296
+ LR+F G P G P+ + + + + +++ V Y PDG V
Sbjct: 175 RVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGV 234
Query: 297 ARDFTYIDDIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKI 356
RD+ ++ D+ +G +A LD NLG V +V E
Sbjct: 235 -RDYIHVVDLARGHIAALDALERRDASLT----------VNLGTGRGYSVLEVVRAFE-- 281
Query: 357 LKVKAETKVLPLP----RNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRW 406
KA + +P R GDV +AN + A +G+ DLE RW
Sbjct: 282 ---KASGRAVPYELVARRPGDVAECYANPAAAAETIGWKAERDLERMCADHWRW 332
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 94/350 (26%), Positives = 146/350 (41%), Gaps = 41/350 (11%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
VLVTG AG++GSH + L + G + DN +N S+ AR +L + + + D+
Sbjct: 14 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSV--ARLEVLTKHHIPFYEVDLC 71
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
D+ L+K+F V+H A V + Q P Y +NI G V LLE + +
Sbjct: 72 DRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVS-KF 130
Query: 202 VWASSSSVYGVNKK----VPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYG-----LS 252
V++SS++VYG + +P E+ P + Y TK A E I N +Y
Sbjct: 131 VFSSSATVYGDATRFPNMIPIPEECPLG-PTNPYGHTKYAIENIL---NDLYNSDKKSWK 186
Query: 253 ITGLRFFTVYG----------PWGRPDMAYFFFTRDIIRGKRITV------YEAPDGASV 296
LR+F G P G P+ + + + G+R + Y++ DG +
Sbjct: 187 FAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQ-VAVGRREKLYIFGDDYDSRDGTPI 245
Query: 297 ARDFTYIDDIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKI 356
RD+ ++ D+ KG +A L R +NLG+ V + K
Sbjct: 246 -RDYIHVVDLAKGHIAALQ------YLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKA 298
Query: 357 LKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRW 406
+ KV R GDV A A+REL + +E K +W
Sbjct: 299 SGIDLPYKVTGR-RAGDVLNLTAKPDRAKRELKWQTELQVEDSCKDLWKW 347
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/344 (23%), Positives = 142/344 (41%), Gaps = 47/344 (13%)
Query: 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVI 136
+ L + +TGA GF+ SH++ LK G V+ D N + T +F
Sbjct: 27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE------------DMFCD 74
Query: 137 DADINDKSLLDKIFNVV-AFTHVMHLAAQ-AGVRYAMQNPNSYVESNIAGFVNLLETCKS 194
+ + D +++ V HV +LAA G+ + N + + +N N++E +
Sbjct: 75 EFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARI 134
Query: 195 SDPQPAIVWASSSSVYGVNKK-----VPFSEKDR-TDQPASLYAATKKAGEAIAHAYNHI 248
+ + +ASS+ +Y K+ V E D +P Y K A E + YN
Sbjct: 135 NGIK-RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKD 193
Query: 249 YGLSITGLRFFTVYGPW-----GRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYI 303
+G+ RF +YGP+ GR F + R ++ DG R FT+I
Sbjct: 194 FGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMW--GDGLQT-RSFTFI 250
Query: 304 DDIVKGCLAGLDTAXXXXXXXXXXXXPAEFRI-FNLGNTTPVPVSRLVSLLEKILKVKAE 362
D+ V+G L ++FR N+G+ V ++ + ++ + K
Sbjct: 251 DECVEGVL---------------RLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLP 295
Query: 363 TKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRW 406
+P P V+ +++ +L + +LG+ P L+ GL+ W
Sbjct: 296 IHHIPGPEG--VRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFW 337
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 80/344 (23%), Positives = 142/344 (41%), Gaps = 47/344 (13%)
Query: 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVI 136
+ L + +TGA GF+ SH++ LK G V+ D N + T +F
Sbjct: 27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE------------DMFCD 74
Query: 137 DADINDKSLLDKIFNVV-AFTHVMHLAAQ-AGVRYAMQNPNSYVESNIAGFVNLLETCKS 194
+ + D +++ V HV +LAA G+ + N + + +N N++E +
Sbjct: 75 EFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARI 134
Query: 195 SDPQPAIVWASSSSVYGVNKK-----VPFSEKDR-TDQPASLYAATKKAGEAIAHAYNHI 248
+ + +ASS+ +Y K+ V E D +P Y K A E + YN
Sbjct: 135 NGIK-RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKD 193
Query: 249 YGLSITGLRFFTVYGPW-----GRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYI 303
+G+ RF +YGP+ GR F + R ++ DG R FT+I
Sbjct: 194 FGIECRIGRFHNIYGPFGTWKGGREAAPAAFCRKAQTSTDRFEMW--GDGLQT-RSFTFI 250
Query: 304 DDIVKGCLAGLDTAXXXXXXXXXXXXPAEFRI-FNLGNTTPVPVSRLVSLLEKILKVKAE 362
D+ V+G L ++FR N+G+ V ++ + ++ + K
Sbjct: 251 DECVEGVL---------------RLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLP 295
Query: 363 TKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRW 406
+P P V+ +++ +L + +LG+ P L+ GL+ W
Sbjct: 296 IHHIPGPEG--VRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFW 337
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 110/249 (44%), Gaps = 35/249 (14%)
Query: 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGV 133
PR + V +TG G +GSH++ L +RGD V+G+DNF R+ L + +
Sbjct: 16 PRGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFAT-------GRREHLKDHPNL 68
Query: 134 FVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVE---SNIAGFVNLLE 190
++ I D +L++++ + V+H AA + ++P+ + +N G N+++
Sbjct: 69 TFVEGSIADHALVNQLIGDLQPDAVVHTAA------SYKDPDDWYNDTLTNCVGGSNVVQ 122
Query: 191 TCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQP----ASLYAATKKAGEAIAHAYN 246
K ++ V+ ++ YGV P + R D P S YA +K A E Y
Sbjct: 123 AAKKNNVG-RFVYFQTALCYGVK---PIQQPVRLDHPRNPANSSYAISKSANE----DYL 174
Query: 247 HIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDI 306
GL R V GP FF R + GK+ V +A RDF ++ D+
Sbjct: 175 EYSGLDFVTFRLANVVGPRNVSGPLPIFFQR-LSEGKKCFVTKA------RRDFVFVKDL 227
Query: 307 VKGCLAGLD 315
+ + +D
Sbjct: 228 ARATVRAVD 236
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 79/344 (22%), Positives = 142/344 (41%), Gaps = 47/344 (13%)
Query: 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVI 136
+ L + +TGA GF+ SH++ LK G V+ D N + T +F
Sbjct: 27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE------------DMFCD 74
Query: 137 DADINDKSLLDKIFNVV-AFTHVMHLAAQ-AGVRYAMQNPNSYVESNIAGFVNLLETCKS 194
+ + D +++ V HV +LAA G+ + N + + +N N++E +
Sbjct: 75 EFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARI 134
Query: 195 SDPQPAIVWASSSSVYGVNKK-----VPFSEKDR-TDQPASLYAATKKAGEAIAHAYNHI 248
+ + +ASS+ +Y K+ V E D +P Y + A E + YN
Sbjct: 135 NGIK-RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLERLATEELCKHYNKD 193
Query: 249 YGLSITGLRFFTVYGPW-----GRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYI 303
+G+ RF +YGP+ GR F + R ++ DG R FT+I
Sbjct: 194 FGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMW--GDGLQT-RSFTFI 250
Query: 304 DDIVKGCLAGLDTAXXXXXXXXXXXXPAEFRI-FNLGNTTPVPVSRLVSLLEKILKVKAE 362
D+ V+G L ++FR N+G+ V ++ + ++ + K
Sbjct: 251 DECVEGVL---------------RLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLP 295
Query: 363 TKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRW 406
+P P V+ +++ +L + +LG+ P L+ GL+ W
Sbjct: 296 IHHIPGPEG--VRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFW 337
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 79/344 (22%), Positives = 142/344 (41%), Gaps = 47/344 (13%)
Query: 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVI 136
+ L + +TGA GF+ SH++ LK G V+ D N + T +F
Sbjct: 27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE------------DMFCD 74
Query: 137 DADINDKSLLDKIFNVV-AFTHVMHLAAQ-AGVRYAMQNPNSYVESNIAGFVNLLETCKS 194
+ + D +++ V HV +LAA G+ + N + + +N N++E +
Sbjct: 75 EFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARI 134
Query: 195 SDPQPAIVWASSSSVYGVNKK-----VPFSEKDR-TDQPASLYAATKKAGEAIAHAYNHI 248
+ + +ASS+ +Y K+ V E D +P + K A E + YN
Sbjct: 135 NGIK-RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKD 193
Query: 249 YGLSITGLRFFTVYGPW-----GRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYI 303
+G+ RF +YGP+ GR F + R ++ DG R FT+I
Sbjct: 194 FGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMW--GDGLQT-RSFTFI 250
Query: 304 DDIVKGCLAGLDTAXXXXXXXXXXXXPAEFRI-FNLGNTTPVPVSRLVSLLEKILKVKAE 362
D+ V+G L ++FR N+G+ V ++ + ++ + K
Sbjct: 251 DECVEGVL---------------RLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLP 295
Query: 363 TKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRW 406
+P P V+ +++ +L + +LG+ P L+ GL+ W
Sbjct: 296 IHHIPGPEG--VRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFW 337
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 108/239 (45%), Gaps = 30/239 (12%)
Query: 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDAD 139
+ L+TG AGFVG +++ L ++ V G +R + V +I D
Sbjct: 13 MRALITGVAGFVGKYLANHLTEQNVEVFG-------------TSRNNEAKLPNVEMISLD 59
Query: 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP 199
I D + K+ + + ++ HLAA++ V+ + N +N+ G +++L+ + S+
Sbjct: 60 IMDSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDC 119
Query: 200 AIVWASSSSVYG--VNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLR 257
I+ SS YG + ++ P SE+++ +P S Y +K + +A Y YG+ I R
Sbjct: 120 RILTIGSSEEYGMILPEESPVSEENQL-RPMSPYGVSKASVGMLARQYVKAYGMDIIHTR 178
Query: 258 FFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV--------ARDFTYIDDIVK 308
F G P + F T+D K+I E + RDFT + DIV+
Sbjct: 179 TFNHIG----PGQSLGFVTQDF--AKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQ 231
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 93/401 (23%), Positives = 159/401 (39%), Gaps = 86/401 (21%)
Query: 80 LTVLVTGAAGFVGSHVSLALKKRG-------DGVLGLDNFNNYYETSLKKARK------- 125
+ VLV G AG++GSH AL + D ++G +++ ET ARK
Sbjct: 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGP 62
Query: 126 --GLLERAGVFVIDADINDKSLLDKIFNVVA-FTHVMHLAAQAGVRYAMQNPNSYVESNI 182
+R + D+ ++ L+ +F V+H+ A V ++++P Y ++N+
Sbjct: 63 KPPWADRYAALEV-GDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNV 121
Query: 183 AGFVNLLET-----CKSSDPQPAIVWASSSSVYG------VNKKVPFSEKDRTDQPASLY 231
G + LL+ C I+++SS++++G V+ + + P S Y
Sbjct: 122 VGILRLLQAMLLHKCDK------IIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPY 175
Query: 232 AATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFF-------------FTRD 278
+K E + YG+ LR+F G D+ + D
Sbjct: 176 GESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSD 235
Query: 279 IIRGKRITVYE----------------APDGASVARDFTYIDDIVKGCLAGLDTAXXXXX 322
I +R+T++E PDG V RD+ ++ D+ + LD
Sbjct: 236 IAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCV-RDYVHVCDLASAHILALDYVEKLGP 294
Query: 323 XXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLP------RNGDVQF 376
F +FNLG SR S+ E +++V +T P+P R GD +
Sbjct: 295 NDKSKY----FSVFNLG------TSRGYSVRE-VIEVARKTTGHPIPVRECGRREGDPAY 343
Query: 377 THANISLAQRELGYMPTTD-LETGLK---KFVRWYLSYYNS 413
A A+ LG+ P D LE ++ KF R + + Y S
Sbjct: 344 LVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTHPNGYAS 384
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 91/200 (45%), Gaps = 24/200 (12%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGL--LERAGVF-VIDA 138
+L+TG GF+GS+++ +G ++ DN S K A L L G F +
Sbjct: 4 LLITGGCGFLGSNLASFALSQGIDLIVFDNL------SRKGATDNLHWLSSLGNFEFVHG 57
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
DI +K+ + ++ HLA Q + ++ NP E N+ G +NLLE + +
Sbjct: 58 DIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSN 117
Query: 199 PAIVWASSSSVYGVNKKVPFSEKDR----TDQPA-----------SLYAATKKAGEAIAH 243
I+++S++ VYG ++ ++E + D+P S Y +K A +
Sbjct: 118 CNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYML 177
Query: 244 AYNHIYGLSITGLRFFTVYG 263
Y I+GL+ R ++YG
Sbjct: 178 DYARIFGLNTVVFRHSSMYG 197
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 23/194 (11%)
Query: 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGV 133
PR + + +L+TG AG +GS++ +G +L +DNF R+ L AG+
Sbjct: 16 PRGSH-MRILITGGAGCLGSNLIEHWLPQGHEILVIDNFAT-------GKREVLPPVAGL 67
Query: 134 FVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVE---SNIAGFVNLLE 190
VI+ + D LL++ F+ THV+H AA A ++P+ + E +N+ G +N+ +
Sbjct: 68 SVIEGSVTDAGLLERAFDSFKPTHVVHSAA------AYKDPDDWAEDAATNVQGSINVAK 121
Query: 191 TCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYG 250
+ + + + ++ YG VP D P + Y +K AGE A+ +
Sbjct: 122 AASKAGVKRLLNF-QTALCYGRPATVPI-PIDSPTAPFTSYGISKTAGE----AFLMMSD 175
Query: 251 LSITGLRFFTVYGP 264
+ + LR V GP
Sbjct: 176 VPVVSLRLANVTGP 189
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 102/236 (43%), Gaps = 26/236 (11%)
Query: 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDAD 139
L + VTG GF+G +V ++K G+ T + R + + +
Sbjct: 3 LKIAVTGGTGFLGQYVVESIKNDGN-------------TPIILTRS--IGNKAINDYEYR 47
Query: 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP 199
++D +L D I + V+HLAA G Q S N NL + C ++
Sbjct: 48 VSDYTLEDLINQLNDVDAVVHLAATRG----SQGKISEFHDNEILTQNLYDACYENNISN 103
Query: 200 AIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFF 259
IV+AS+ S Y +P++EK+ P Y +K A E I + Y+ GL I LRF
Sbjct: 104 -IVYASTISAYSDETSLPWNEKELP-LPDLXYGVSKLACEHIGNIYSRKKGLCIKNLRFA 161
Query: 260 TVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA-RDFTYIDDIVKGCLAGL 314
+YG + + F R G+++T++ SVA R+F Y D K + L
Sbjct: 162 HLYGFNEKNNYXINRFFRQAFHGEQLTLH----ANSVAKREFLYAKDAAKSVIYAL 213
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/341 (21%), Positives = 134/341 (39%), Gaps = 38/341 (11%)
Query: 82 VLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
V+V G AGFVGS++ L + G + V +DN L + + + V + I
Sbjct: 35 VMVVGGAGFVGSNLVKRLLELGVNQVHVVDNL-------LSAEKINVPDHPAVRFSETSI 87
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
D +LL + + + +V HLA G + ++ +P + E+N + L E K
Sbjct: 88 TDDALLASLQD--EYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKK 145
Query: 201 IVWASSSSVYGVNKKVPFSEKDRTD-----QPASLYAATKKAGEAIAHAYNHIYGLSITG 255
+V++++ + TD S Y+ +K GE + Y+ + L
Sbjct: 146 VVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQLPTVR 205
Query: 256 LRFFTVYGP--------W-GRPDMAYFFFTRDII-RGKRITVYEAPDGASVARDFTYIDD 305
RF VYGP W G P + T I + + +G RDF +++D
Sbjct: 206 ARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVATRDFIFVED 265
Query: 306 IVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKV 365
+ G +A P ++N+ + ++ L + + +I E
Sbjct: 266 VANGLIA-----------CAADGTPGG--VYNIASGKETSIADLATKINEITGNNTELDR 312
Query: 366 LPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRW 406
LP + + A+RELG+ ++ GL+K + W
Sbjct: 313 LPKRPWDNSGKRFGSPEKARRELGFSADVSIDDGLRKTIEW 353
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 84/343 (24%), Positives = 142/343 (41%), Gaps = 44/343 (12%)
Query: 82 VLVTGAAGFVGSH-VSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDAD 139
++VTG AGF+GS+ V D V LD Y + L +R + V D
Sbjct: 7 IIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLT--YAGNKANLEAILGDRVELVV--GD 62
Query: 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP 199
I D L+DK+ ++H AA++ ++ +P+ ++ +N G LLE + D +
Sbjct: 63 IADAELVDKL--AAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRF 120
Query: 200 AIVWASSSSVYGVNKKVPFSEK--------------DRTDQPASLYAATKKAGEAIAHAY 245
V S+ VYG +P E + P+S Y++TK A + I A+
Sbjct: 121 HHV--STDEVYG---DLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAW 175
Query: 246 NHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDD 305
+G+ T YGP+ + +I+ G + +Y +G +V RD+ + +D
Sbjct: 176 VRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLY--GEGKNV-RDWIHTND 232
Query: 306 IVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKV 365
G A L + I G V L+ LEK+ + K
Sbjct: 233 HSTGVWAILTKGRMGET----------YLIGADGEKNNKEVLELI--LEKMGQPKDAYDH 280
Query: 366 LPLPRNGDVQFTHANISLAQRELGYMPT-TDLETGLKKFVRWY 407
+ D+++ + S + ELG+ P TD GL++ ++WY
Sbjct: 281 VTDRAGHDLRYA-IDASKLRDELGWTPQFTDFSEGLEETIQWY 322
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 90/388 (23%), Positives = 155/388 (39%), Gaps = 77/388 (19%)
Query: 70 KSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLL 128
++ P S + VL+ G GF+G H+S + + D V G+D ++ R G L
Sbjct: 15 QTQGPGSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMD---------MQTDRLGDL 65
Query: 129 ---ERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGF 185
ER F D IN + + ++V ++ L A A ++ P E +
Sbjct: 66 VKHERMHFFEGDITINKEWVE---YHVKKCDVILPLVAIATPATYVKQPLRVFELDFEAN 122
Query: 186 VNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRT------DQPASLYAATKKAGE 239
+ ++ + +V+ S+S VYG+ F ++P +YA +K+ +
Sbjct: 123 LPIVRSAVKYGKH--LVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMD 180
Query: 240 AIAHAYNHIYGLSITGLRFFTVYGP--WGRPDMAYFF------------FTRDIIRGKRI 285
+ I+G + GL FT++ P W P + + F I+RG+ I
Sbjct: 181 RV------IWGYGMEGLN-FTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENI 233
Query: 286 TVYEAPDGASVARDFTYIDDIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVP 345
++ DG S R FTY+DD + + ++ + A +I+N+GN P
Sbjct: 234 SLV---DGGSQKRAFTYVDDGISALMKIIENSNGV----------ATGKIYNIGN--PNN 278
Query: 346 VSRLVSLLEKILKVKAE-------TKVLPLPR--------NG--DVQFTHANISLAQREL 388
+ L K+L++ AE K + L NG DVQ I +EL
Sbjct: 279 NFSVRELANKMLELAAEFPEYADSAKRVKLVETTSGAYYGNGYQDVQNRVPKIENTMQEL 338
Query: 389 GYMPTTDLETGLKKFVRWYLSYYNSASA 416
G+ P + L++ Y + A A
Sbjct: 339 GWAPQFTFDDALRQIFEAYRGHVADARA 366
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 83/348 (23%), Positives = 136/348 (39%), Gaps = 67/348 (19%)
Query: 82 VLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
++VTG AGF+GS++ AL +G +L +DN LK K FV D+
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDN--------LKDGTK--------FVNLVDL 45
Query: 141 NDKSLLDK---IFNVVA------FTHVMHLAAQAGV-----RYAMQNPNSYVESNIAGFV 186
N +DK + ++A + H A + +Y M N Y +
Sbjct: 46 NIADYMDKEDFLIQIMAGEEFGDVEAIFHEGAXSSTTEWDGKYMMDNNYQYSKE------ 99
Query: 187 NLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYN 246
LL C + + ++ASS++ YG + F E ++P ++Y +K +
Sbjct: 100 -LLHYC--LEREIPFLYASSAATYG-GRTSDFIESREYEKPLNVYGYSKFLFDEYVRQIL 155
Query: 247 HIYGLSITGLRFFTVYGPW----GRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTY 302
I G R+F VYGP G F + G+ ++E + + RDF Y
Sbjct: 156 PEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSE--NFKRDFVY 213
Query: 303 IDDIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAE 362
+ D+ L L+ IFNLG T + V+ K +
Sbjct: 214 VGDVADVNLWFLENGVSG--------------IFNLG-TGRAESFQAVADATLAYHKKGQ 258
Query: 363 TKVLPLPR--NGDVQ-FTHANISLAQRELGY-MPTTDLETGLKKFVRW 406
+ +P P G Q FT A+++ R GY P + G+ +++ W
Sbjct: 259 IEYIPFPDKLKGRYQAFTQADLT-NLRAAGYDKPFKTVAEGVTEYMAW 305
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 87/384 (22%), Positives = 144/384 (37%), Gaps = 72/384 (18%)
Query: 46 ISPSPSATFRRHSSGGPQWEKQIVKSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRG-D 104
+ + +A F R P R ++VTG AGF+GS++ AL +G
Sbjct: 18 MKETAAAKFERQHMDSPDLGTGGGSGIEGR-----MIIVTGGAGFIGSNIVKALNDKGIT 72
Query: 105 GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDK---IFNVVA------F 155
+L +DN LK K FV D+N +DK + ++A
Sbjct: 73 DILVVDN--------LKDGTK--------FVNLVDLNIADYMDKEDFLIQIMAGEEFGDV 116
Query: 156 THVMHLAAQAGV-----RYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVY 210
+ H A + +Y M N Y + LL C + + ++ASS++ Y
Sbjct: 117 EAIFHEGACSSTTEWDGKYMMDNNYQYSKE-------LLHYCL--EREIPFLYASSAATY 167
Query: 211 GVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPW----G 266
G + F E ++P +++ +K + I G R+F VYGP G
Sbjct: 168 G-GRTSDFIESREYEKPLNVFGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKG 226
Query: 267 RPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAXXXXXXXXX 326
F + G+ ++E + + RDF Y+ D+ L L+
Sbjct: 227 SMASVAFHLNTQLNNGESPKLFEGSE--NFKRDFVYVGDVADVNLWFLENGVSG------ 278
Query: 327 XXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPR--NGDVQ-FTHANISL 383
IFNLG T + V+ K + + +P P G Q FT A+++
Sbjct: 279 --------IFNLG-TGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLT- 328
Query: 384 AQRELGY-MPTTDLETGLKKFVRW 406
R GY P + G+ +++ W
Sbjct: 329 NLRAAGYDKPFKTVAEGVTEYMAW 352
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 5/181 (2%)
Query: 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDA 138
G L+TG G G++++ L ++G V G D + + S + G+ V +I
Sbjct: 3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEF-ASWRLKELGI--ENDVKIIHM 59
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
D+ + S + + V V +LAAQ+ V + + P E + G + +LE ++ P
Sbjct: 60 DLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPD 119
Query: 199 PAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGL-SITGLR 257
AS+S ++G +++P +EK P S YA K G I Y Y + + +G+
Sbjct: 120 TKFYQASTSEMFGKVQEIPQTEKTPF-YPRSPYAVAKLFGHWITVNYREAYNMFACSGIL 178
Query: 258 F 258
F
Sbjct: 179 F 179
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/349 (22%), Positives = 131/349 (37%), Gaps = 36/349 (10%)
Query: 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLD----NFNNYYETSLKKARKGLLERAGV 133
+G V VTG GF G +SL L+ G V G + +ET+ + G+ G
Sbjct: 8 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETA--RVADGMQSEIG- 64
Query: 134 FVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCK 193
DI D++ L + V H+AAQ VR + P +N+ G V LLE +
Sbjct: 65 -----DIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIR 119
Query: 194 SSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---- 249
A+V +S Y + + ++ Y+ +K E + +Y + +
Sbjct: 120 HVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPA 179
Query: 250 -----GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYID 304
G ++ +R V G D A DI+R + R + ++
Sbjct: 180 NYGQHGTAVATVRAGNVI---GGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVL 236
Query: 305 DIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETK 364
+ + G L AE F + PV +V E+++K E
Sbjct: 237 EPLSGYL------LLAQKLYTDGAEYAEGWNFGPNDADATPVKNIV---EQMVKYWGEGA 287
Query: 365 VLPLPRNG---DVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSY 410
L N + + + S A+ +LG+ P +L T L+ V W+ ++
Sbjct: 288 SWQLDGNAHPHEAHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNW 336
>pdb|2YY7|A Chain A, Crystal Structure Of Thermolabile L-Threonine
Dehydrogenase From Flavobacterium Frigidimaris Kuc-1
pdb|2YY7|B Chain B, Crystal Structure Of Thermolabile L-Threonine
Dehydrogenase From Flavobacterium Frigidimaris Kuc-1
Length = 312
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 102/242 (42%), Gaps = 34/242 (14%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDA-DI 140
+L+ GA G +G+ ++ L+K L N + ++K ++ V++A D
Sbjct: 5 ILIIGACGQIGTELTQKLRK-------LYGTENVIASDIRKLNTDVVNSGPFEVVNALDF 57
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
N ++ + V T + +AA A +NP + N+ ++L +
Sbjct: 58 NQ---IEHLVEVHKITDIYLMAALLSAT-AEKNPAFAWDLNMNSLFHVL-NLAKAKKIKK 112
Query: 201 IVWASSSSVYGVNKKVPFSEKDRTDQ-----PASLYAATKKAGEAIAHAYNHIYGLSITG 255
I W SS +V+G P + K+ T Q P+++Y +K+AGE Y++IYG+ +
Sbjct: 113 IFWPSSIAVFG-----PTTPKENTPQYTIMEPSTVYGISKQAGERWCEYYHNIYGVDVRS 167
Query: 256 LRFFTVYGPWGRP------DMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKG 309
+R+ + W P D A F + I K YE + Y+DD +
Sbjct: 168 IRYPGLIS-WSTPPGGGTTDYAVDIFYKAIADKK----YECFLSSETKMPMMYMDDAIDA 222
Query: 310 CL 311
+
Sbjct: 223 TI 224
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 23/179 (12%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
+LVTG+AG VG V AL+ +G V G D L+ + G G V+ + +
Sbjct: 22 ILVTGSAGRVGRAVVAALRTQGRTVRGFD---------LRPSGTG-----GEEVVGSLED 67
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
++L D I V A V+HL A + +A + + N+ G LL+ ++ +
Sbjct: 68 GQALSDAIMGVSA---VLHLGAF--MSWAPADRDRMFAVNVEGTRRLLDAASAAGVR-RF 121
Query: 202 VWASSSSVYGVNKK--VPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRF 258
V+ASS VY N+ +P +E D P S Y TK GE + + + LRF
Sbjct: 122 VFASSGEVYPENRPEFLPVTE-DHPLCPNSPYGLTKLLGEELVRFHQRSGAMETVILRF 179
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 69/168 (41%), Gaps = 4/168 (2%)
Query: 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVID 137
+G V VTG GF GS +SL L + G V G + + R L + +
Sbjct: 8 QGKRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPTVPSLFEIVRLNDLMESHI---- 63
Query: 138 ADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDP 197
DI D L V H+AAQ VR + + P +N+ G V+LLET K
Sbjct: 64 GDIRDFEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTYSTNVMGTVHLLETVKQVGN 123
Query: 198 QPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAY 245
A+V +S Y + V ++ Y+ +K E +A A+
Sbjct: 124 IKAVVNITSDKCYDNREWVWGYRENEPMGGYDPYSNSKGCAELVASAF 171
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 77/182 (42%), Gaps = 24/182 (13%)
Query: 82 VLVTGAAGFVGSHVS--LALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDAD 139
+LVTG++G +G+ + LA K V+ D + G+ I D
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQR--------------DTGGIKFITLD 47
Query: 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP 199
++++ +D+ + + HLA + ++P + N+ G N+LE K +
Sbjct: 48 VSNRDEIDRAVEKYSIDAIFHLAGILSAK-GEKDPALAYKVNMNGTYNILEAAKQHRVEK 106
Query: 200 AIVWASSSSVYGVN---KKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGL 256
++ S+ V+G KVP R P ++Y TK A E + Y +GL + L
Sbjct: 107 VVI-PSTIGVFGPETPKNKVPSITITR---PRTMYGVTKIAAELLGQYYYEKFGLDVRSL 162
Query: 257 RF 258
R+
Sbjct: 163 RY 164
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 94/220 (42%), Gaps = 28/220 (12%)
Query: 83 LVTGAAGFVGSHVSLALKKRGDGVLGL----DNFN----NYYETSLKKARKGLLERAGVF 134
L+TG G GS+++ L +G V GL NFN N+ K L++
Sbjct: 32 LITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMK----- 86
Query: 135 VIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKS 194
+ AD+ D S L + +V+ V +LAAQ+ V + + P+ + G + LLE +S
Sbjct: 87 LHYADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRS 146
Query: 195 S--DPQPAIVW--ASSSSVYGVNKKVPFSEKDRTD-QPASLYAATKKAGEAIAHAYNHIY 249
D + + A SS ++G P + + T P S YAA+K A Y Y
Sbjct: 147 HTIDSGRTVKYYQAGSSEMFG---STPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAY 203
Query: 250 GL-SITGLRFFTVYGPWGRPDMAYFFFTRDIIRG-KRITV 287
GL + G+ F P F TR I R RI V
Sbjct: 204 GLFACNGILFNH-----ESPRRGENFVTRKITRALGRIKV 238
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 22/202 (10%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
+LVTGAAG VGS + L G L +E L A ++ D+
Sbjct: 5 LLVTGAAGGVGSAIRPHL-----GTLA-------HEVRLSDIVDLGAAEAHEEIVACDLA 52
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNP-NSYVESNIAGFVNLLETCKSSDPQPA 200
D + + V ++HL +++ P N +++NI G NL E ++ +P
Sbjct: 53 DAQAVHDL--VKDCDGIIHLGG-----VSVERPWNDILQANIIGAYNLYEAARNLG-KPR 104
Query: 201 IVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFT 260
IV+ASS+ G + + + +P SLY +K GE +A Y H + + +R +
Sbjct: 105 IVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCFGEDLASLYYHKFDIETLNIRIGS 164
Query: 261 VY-GPWGRPDMAYFFFTRDIIR 281
+ P MA + D +R
Sbjct: 165 CFPKPKDARMMATWLSVDDFMR 186
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 24/182 (13%)
Query: 82 VLVTGAAGFVGSHVS--LALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDAD 139
+LVTG++G +G+ + LA K V+ D + G+ I D
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQR--------------DTGGIKFITLD 47
Query: 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP 199
++++ +D+ + + HLA + ++P + N+ G N+LE K +
Sbjct: 48 VSNRDEIDRAVEKYSIDAIFHLAGILSAK-GEKDPALAYKVNMNGTYNILEAAKQHRVEK 106
Query: 200 AIVWASSSSVYGVN---KKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGL 256
++ S+ V+G KVP R P +++ TK A E + Y +GL + L
Sbjct: 107 VVI-PSTIGVFGPETPKNKVPSITITR---PRTMFGVTKIAAELLGQYYYEKFGLDVRSL 162
Query: 257 RF 258
R+
Sbjct: 163 RY 164
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/351 (21%), Positives = 128/351 (36%), Gaps = 65/351 (18%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGL---DNFNNYYETSLKKARKGLLERAGVFVIDA 138
V + G G VGS + L++RGD L L D N LL+ V
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELN-------------LLDSRAVH---- 48
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
D +D+++ + A G+ P ++ N+ N++ +D
Sbjct: 49 DFFASERIDQVY--------LAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN 100
Query: 199 PAIVWASSSSVYGVNKKVPFSEKDR-------TDQPASLYAATKKAGEAIAHAYNHIYGL 251
+++ SS +Y K P +E + T++P YA K AG + +YN YG
Sbjct: 101 -KLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEP---YAIAKIAGIKLCESYNRQYGR 156
Query: 252 SITGLRFFTVYGPWG--RPDMAYFFFTRDIIRGKRITVYEAPD-----GASVARDFTYID 304
+ +YGP P ++ + R T +APD + R+F ++D
Sbjct: 157 DYRSVMPTNLYGPHDNFHPSNSHVIPAL-LRRFHEATAQKAPDVVVWGSGTPMREFLHVD 215
Query: 305 DIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAE-- 362
D+ + ++ A P I N+G + L + K++ K
Sbjct: 216 DMAAASIHVMELA---HEVWLENTQPMLSHI-NVGTGVDCTIRELAQTIAKVVGYKGRVV 271
Query: 363 ---TKVLPLPRN-GDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLS 409
+K PR DV H +LG+ LE GL +W+L
Sbjct: 272 FDASKPDGTPRKLLDVTRLH--------QLGWYHEISLEAGLASTYQWFLE 314
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 77/351 (21%), Positives = 127/351 (36%), Gaps = 65/351 (18%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGL---DNFNNYYETSLKKARKGLLERAGVFVIDA 138
V + G G VGS + L++RGD L L D N LL+ V
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELN-------------LLDSRAVH---- 48
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
D +D+++ + A G+ P ++ N+ N++ +D
Sbjct: 49 DFFASERIDQVY--------LAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN 100
Query: 199 PAIVWASSSSVYGVNKKVPFSEKDR-------TDQPASLYAATKKAGEAIAHAYNHIYGL 251
+++ SS +Y K P +E + T++P YA K AG + +YN YG
Sbjct: 101 -KLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEP---YAIAKIAGIKLCESYNRQYGR 156
Query: 252 SITGLRFFTVYGPWG--RPDMAYFFFTRDIIRGKRITVYEAPD-----GASVARDFTYID 304
+ +YGP P ++ + R T APD + R+F ++D
Sbjct: 157 DYRSVMPTNLYGPHDNFHPSNSHVIPAL-LRRFHEATAQNAPDVVVWGSGTPMREFLHVD 215
Query: 305 DIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAE-- 362
D+ + ++ A P I N+G + L + K++ K
Sbjct: 216 DMAAASIHVMELA---HEVWLENTQPMLSHI-NVGTGVDCTIRELAQTIAKVVGYKGRVV 271
Query: 363 ---TKVLPLPRN-GDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLS 409
+K PR DV H +LG+ LE GL +W+L
Sbjct: 272 FDASKPDGTPRKLLDVTRLH--------QLGWYHEISLEAGLASTYQWFLE 314
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 11/184 (5%)
Query: 83 LVTGAAGFVGSHVSLALKKRGDGVLGL----DNFNNYYETSLKKARKGLLERAGVFVIDA 138
L+TG G GS+++ L ++G V G+ +FN L K + +E + +
Sbjct: 28 LITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIE-GNMKLHYG 86
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
D+ D + L KI N V T + +L AQ+ V+ + + + G + LL+ K+
Sbjct: 87 DLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLI 146
Query: 199 PAIVW--ASSSSVYGVNKKVPFSEKDRTD-QPASLYAATKKAGEAIAHAYNHIYGL-SIT 254
++ + AS+S +YG +++P +K+ T P S Y A K I + Y L ++
Sbjct: 147 NSVKFYQASTSELYGKVQEIP--QKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVN 204
Query: 255 GLRF 258
G+ F
Sbjct: 205 GILF 208
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 77/351 (21%), Positives = 127/351 (36%), Gaps = 65/351 (18%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGL---DNFNNYYETSLKKARKGLLERAGVFVIDA 138
V + G G VGS + L++RGD L L D N LL+ V
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELN-------------LLDSRAVH---- 48
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
D +D+++ + A G+ P ++ N+ N++ +D
Sbjct: 49 DFFASERIDQVY--------LAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN 100
Query: 199 PAIVWASSSSVYGVNKKVPFSEKDR-------TDQPASLYAATKKAGEAIAHAYNHIYGL 251
+++ SS +Y K P +E + T++P YA K AG + +YN YG
Sbjct: 101 -KLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEP---YAIAKIAGIKLCESYNRQYGR 156
Query: 252 SITGLRFFTVYGPWG--RPDMAYFFFTRDIIRGKRITVYEAPD-----GASVARDFTYID 304
+ +YGP P ++ + R T APD + R+F ++D
Sbjct: 157 DYRSVMPTNLYGPHDNFHPSNSHVIPAL-LRRFHEATAQNAPDVVVWGSGTPMREFLHVD 215
Query: 305 DIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAE-- 362
D+ + ++ A P I N+G + L + K++ K
Sbjct: 216 DMAAASIHVMELA---HEVWLENTQPMLSHI-NVGTGVDCTIRDLAQTIAKVVGYKGRVV 271
Query: 363 ---TKVLPLPRN-GDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLS 409
+K PR DV H +LG+ LE GL +W+L
Sbjct: 272 FDASKPDGTPRKLLDVTRLH--------QLGWYHEISLEAGLASTYQWFLE 314
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 76/351 (21%), Positives = 127/351 (36%), Gaps = 65/351 (18%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGL---DNFNNYYETSLKKARKGLLERAGVFVIDA 138
V + G G VGS + L++RGD L L D N LL+ V
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELN-------------LLDSRAVH---- 48
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
D +D+++ + A G+ P ++ N+ N++ +D
Sbjct: 49 DFFASERIDQVY--------LAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN 100
Query: 199 PAIVWASSSSVYGVNKKVPFSEKDR-------TDQPASLYAATKKAGEAIAHAYNHIYGL 251
+++ SS +Y K P +E + T++P YA + AG + +YN YG
Sbjct: 101 -KLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEP---YAIARIAGIKLCESYNRQYGR 156
Query: 252 SITGLRFFTVYGPWG--RPDMAYFFFTRDIIRGKRITVYEAPD-----GASVARDFTYID 304
+ +YGP P ++ + R T APD + R+F ++D
Sbjct: 157 DYRSVMPTNLYGPHDNFHPSNSHVIPAL-LRRFHEATAQSAPDVVVWGSGTPMREFLHVD 215
Query: 305 DIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAE-- 362
D+ + ++ A P I N+G + L + K++ K
Sbjct: 216 DMAAASIHVMELA---HEVWLENTQPMLSHI-NVGTGVDCTIRELAQTIAKVVGYKGRVV 271
Query: 363 ---TKVLPLPRN-GDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLS 409
+K PR DV H +LG+ LE GL +W+L
Sbjct: 272 FDASKPDGTPRKLLDVTRLH--------QLGWYHEISLEAGLASTYQWFLE 314
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 78/191 (40%), Gaps = 16/191 (8%)
Query: 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDAD 139
+ VL+ G GF+G+H++ L + D++ Y A L ++ D
Sbjct: 1 MRVLILGVNGFIGNHLTERLLRE-------DHYEVYGLDIGSDAISRFLNHPHFHFVEGD 53
Query: 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP 199
I+ S + ++V V+ L A A +NP E + + ++ C +
Sbjct: 54 ISIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY--RK 110
Query: 200 AIVWASSSSVYGVNKKVPFSEKDR------TDQPASLYAATKKAGEAIAHAYNHIYGLSI 253
I++ S+S VYG+ F E ++P +Y+ +K+ + + AY GL
Sbjct: 111 RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQF 170
Query: 254 TGLRFFTVYGP 264
T R F GP
Sbjct: 171 TLFRPFNWMGP 181
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 81/200 (40%), Gaps = 19/200 (9%)
Query: 71 STRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLER 130
T R TR VL+ G GF+G+H++ L + D++ Y A L
Sbjct: 8 CTARRRTR---VLILGVNGFIGNHLTERLLRE-------DHYEVYGLDIGSDAISRFLNH 57
Query: 131 AGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLE 190
++ DI+ S + ++V V+ L A A +NP E + + ++
Sbjct: 58 PHFHFVEGDISIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIR 116
Query: 191 TCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDR------TDQPASLYAATKKAGEAIAHA 244
C + I++ S+S VYG+ F E ++P +Y+ +K+ + + A
Sbjct: 117 YCVKY--RKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWA 174
Query: 245 YNHIYGLSITGLRFFTVYGP 264
Y GL T R F GP
Sbjct: 175 YGEKEGLQFTLFRPFNWMGP 194
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 81/200 (40%), Gaps = 19/200 (9%)
Query: 71 STRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLER 130
T R TR VL+ G GF+G+H++ L + D++ Y A L
Sbjct: 8 CTARRRTR---VLILGVNGFIGNHLTERLLRE-------DHYEVYGLDIGSDAISRFLNH 57
Query: 131 AGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLE 190
++ DI+ S + ++V V+ L A A +NP E + + ++
Sbjct: 58 PHFHFVEGDISIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIR 116
Query: 191 TCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDR------TDQPASLYAATKKAGEAIAHA 244
C + I++ S+S VYG+ F E ++P +Y+ +K+ + + A
Sbjct: 117 YCVKY--RKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWA 174
Query: 245 YNHIYGLSITGLRFFTVYGP 264
Y GL T R F GP
Sbjct: 175 YGEKEGLQFTLFRPFNWMGP 194
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 81/200 (40%), Gaps = 19/200 (9%)
Query: 71 STRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLER 130
T R TR VL+ G GF+G+H++ L + D++ Y A L
Sbjct: 8 CTARRRTR---VLILGVNGFIGNHLTERLLRE-------DHYEVYGLDIGSDAISRFLNH 57
Query: 131 AGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLE 190
++ DI+ S + ++V V+ L A A +NP E + + ++
Sbjct: 58 PHFHFVEGDISIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIR 116
Query: 191 TCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDR------TDQPASLYAATKKAGEAIAHA 244
C + I++ S+S VYG+ F E ++P +Y+ +K+ + + A
Sbjct: 117 YCVKY--RKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWA 174
Query: 245 YNHIYGLSITGLRFFTVYGP 264
Y GL T R F GP
Sbjct: 175 YGEKEGLQFTLFRPFNWMGP 194
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 81/200 (40%), Gaps = 19/200 (9%)
Query: 71 STRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLER 130
T R TR VL+ G GF+G+H++ L + D++ Y A L
Sbjct: 8 CTARRRTR---VLILGVNGFIGNHLTERLLRE-------DHYEVYGLDIGSDAISRFLNH 57
Query: 131 AGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLE 190
++ DI+ S + ++V V+ L A A +NP E + + ++
Sbjct: 58 PHFHFVEGDISIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIR 116
Query: 191 TCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDR------TDQPASLYAATKKAGEAIAHA 244
C + I++ S+S VYG+ F E ++P +Y+ +K+ + + A
Sbjct: 117 YCVKY--RKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWA 174
Query: 245 YNHIYGLSITGLRFFTVYGP 264
Y GL T R F GP
Sbjct: 175 YGEKEGLQFTLFRPFNWMGP 194
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 76/351 (21%), Positives = 127/351 (36%), Gaps = 65/351 (18%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGL---DNFNNYYETSLKKARKGLLERAGVFVIDA 138
V + G G VGS + L++RGD L L D N LL+ V
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELN-------------LLDSRAVH---- 48
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
D +D+++ + A G+ P ++ N+ N++ +D
Sbjct: 49 DFFASERIDQVY--------LAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN 100
Query: 199 PAIVWASSSSVYGVNKKVPFSEKDR-------TDQPASLYAATKKAGEAIAHAYNHIYGL 251
+++ +S +Y K P +E + T++P YA K AG + +YN YG
Sbjct: 101 -KLLFLGASCIYPKLAKQPMAESELLQGTLEPTNEP---YAIAKIAGIKLCESYNRQYGR 156
Query: 252 SITGLRFFTVYGPWG--RPDMAYFFFTRDIIRGKRITVYEAPD-----GASVARDFTYID 304
+ +YGP P ++ + R T APD + R+F ++D
Sbjct: 157 DYRSVMPTNLYGPHDNFHPSNSHVIPAL-LRRFHEATAQSAPDVVVWGSGTPMREFLHVD 215
Query: 305 DIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAE-- 362
D+ + ++ A P I N+G + L + K++ K
Sbjct: 216 DMAAASIHVMELA---HEVWLENTQPMLSHI-NVGTGVDCTIRELAQTIAKVVGYKGRVV 271
Query: 363 ---TKVLPLPRN-GDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLS 409
+K PR DV H +LG+ LE GL +W+L
Sbjct: 272 FDASKPDGTPRKLLDVTRLH--------QLGWYHEISLEAGLASTYQWFLE 314
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 19/200 (9%)
Query: 71 STRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLER 130
T R TR VL+ G GF+G+H++ L + D++ Y A L
Sbjct: 8 CTARRRTR---VLILGVNGFIGNHLTERLLRE-------DHYEVYGLDIGSDAISRFLNH 57
Query: 131 AGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLE 190
++ DI+ S + ++V V+ L A A +NP E + + ++
Sbjct: 58 PHFHFVEGDISIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIR 116
Query: 191 TCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDR------TDQPASLYAATKKAGEAIAHA 244
C + I++ S++ VYG+ F E ++P +Y+ +K+ + + A
Sbjct: 117 YCVKY--RKRIIFPSTAEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWA 174
Query: 245 YNHIYGLSITGLRFFTVYGP 264
Y GL T R F GP
Sbjct: 175 YGEKEGLQFTLFRPFNWMGP 194
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 81/200 (40%), Gaps = 19/200 (9%)
Query: 71 STRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLER 130
T R TR VL+ G GF+G+H++ L + D++ Y A L
Sbjct: 310 CTARRRTR---VLILGVNGFIGNHLTERLLRE-------DHYEVYGLDIGSDAISRFLNH 359
Query: 131 AGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLE 190
++ DI+ S + ++V V+ L A A +NP E + + ++
Sbjct: 360 PHFHFVEGDISIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIR 418
Query: 191 TCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDR------TDQPASLYAATKKAGEAIAHA 244
C + I++ S+S VYG+ F E ++P +Y+ +K+ + + A
Sbjct: 419 YCVKY--RKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWA 476
Query: 245 YNHIYGLSITGLRFFTVYGP 264
Y GL T R F GP
Sbjct: 477 YGEKEGLQFTLFRPFNWMGP 496
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 88/216 (40%), Gaps = 33/216 (15%)
Query: 83 LVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVID----- 137
L+TG G GS+++ L ++G V G+ + + T ER D
Sbjct: 5 LITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNT----------ERVDHIYQDPHTCN 54
Query: 138 -------ADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLE 190
D++D S L +I V V +L A + V + ++P + + G + LLE
Sbjct: 55 PKFHLHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLE 114
Query: 191 TCK--SSDPQPAIVWASSSSVYGVNKKVPFSEKDRTD-QPASLYAATKKAGEAIAHAYNH 247
+ + + AS+S +YG+ +++P +K+ T P S YA K I Y
Sbjct: 115 AIRFLGLEKKTRFYQASTSELYGLVQEIP--QKETTPFYPRSPYAVAKLYAYWITVNYRE 172
Query: 248 IYGL-SITGLRFFTVYGPWGRPDMAYFFFTRDIIRG 282
YG+ + G+ F P F TR I R
Sbjct: 173 SYGMYACNGILF-----NHESPRRGETFVTRKITRA 203
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 75/351 (21%), Positives = 127/351 (36%), Gaps = 65/351 (18%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGL---DNFNNYYETSLKKARKGLLERAGVFVIDA 138
V + G G VGS + L++RGD L L D N LL+ V
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELN-------------LLDSRAVH---- 48
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
D +D+++ + A G+ P ++ N+ N++ +D
Sbjct: 49 DFFASERIDQVY--------LAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN 100
Query: 199 PAIVWASSSSVYGVNKKVPFSEKDR-------TDQPASLYAATKKAGEAIAHAYNHIYGL 251
+++ SS +Y K P +E + T++P ++ K AG + +YN YG
Sbjct: 101 -KLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPEAI---AKIAGIKLCESYNRQYGR 156
Query: 252 SITGLRFFTVYGPWG--RPDMAYFFFTRDIIRGKRITVYEAPD-----GASVARDFTYID 304
+ +YGP P ++ + R T APD + R+F ++D
Sbjct: 157 DYRSVMPTNLYGPHDNFHPSNSHVIPAL-LRRFHEATAQSAPDVVVWGSGTPMREFLHVD 215
Query: 305 DIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAE-- 362
D+ + ++ A P I N+G + L + K++ K
Sbjct: 216 DMAAASIHVMELA---HEVWLENTQPMLSHI-NVGTGVDCTIRELAQTIAKVVGYKGRVV 271
Query: 363 ---TKVLPLPRN-GDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLS 409
+K PR DV H +LG+ LE GL +W+L
Sbjct: 272 FDASKPDGTPRKLLDVTRLH--------QLGWYHEISLEAGLASTYQWFLE 314
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 84/213 (39%), Gaps = 25/213 (11%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAG--VFVIDAD 139
+LVTGAAG +G + L + L+ A L+ AG + D
Sbjct: 6 LLVTGAAGQLGRVMRERLAPMAE--------------ILRLADLSPLDPAGPNEECVQCD 51
Query: 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNP-NSYVESNIAGFVNLLETCKSSDPQ 198
+ D + ++ + V ++HL +++ P ++ NI G NL E ++ Q
Sbjct: 52 LADANAVNAM--VAGCDGIVHLGG-----ISVEKPFEQILQGNIIGLYNLYEAARAHG-Q 103
Query: 199 PAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRF 258
P IV+ASS+ G + D +P LY +K GE +A Y +G +R
Sbjct: 104 PRIVFASSNHTIGYYPQTERLGPDVPARPDGLYGVSKCFGENLARMYFDKFGQETALVRI 163
Query: 259 FTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAP 291
+ M +F+ D V+ AP
Sbjct: 164 GSCTPEPNNYRMLSTWFSHDDFVSLIEAVFRAP 196
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 12/138 (8%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGL-LERAGVFVI--D 137
TV VTGA+GF+GS + + L +RG V T++KK + L L +A +
Sbjct: 7 TVCVTGASGFIGSWLVMRLLERGYTVRA----TVRDPTNVKKVKHLLDLPKAETHLTLWK 62
Query: 138 ADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNP-NSYVESNIAGFVNLLETCKSSD 196
AD+ D+ D+ + T V H+A + + ++P N ++ I G + ++++C ++
Sbjct: 63 ADLADEGSFDE--AIKGCTGVFHVATP--MDFESKDPENEVIKPTIEGMLGIMKSCAAAK 118
Query: 197 PQPAIVWASSSSVYGVNK 214
+V+ SS+ + +
Sbjct: 119 TVRRLVFTSSAGTVNIQE 136
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 14/176 (7%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
+ LVTG G G++++ L ++G V GL + +T + G+ + D D+
Sbjct: 16 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSS-DTRWRLRELGI--EGDIQYEDGDM 72
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
D + + V +LAAQ+ V + P + + G +LLE + P+
Sbjct: 73 ADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETR 132
Query: 201 IVWASSSSVYGVNKKVPFSEKDRTDQ-----PASLYAATKKAGEAIAHAYNHIYGL 251
AS+S ++G+ + +R D+ P S Y K G I Y +GL
Sbjct: 133 FYQASTSEMFGL------IQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESFGL 182
>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|B Chain B, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|C Chain C, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|D Chain D, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
Length = 320
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 76/198 (38%), Gaps = 38/198 (19%)
Query: 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVI- 136
+ + +LVTG +G VG + K DG GL VFV
Sbjct: 6 QSMRILVTGGSGLVGKAIQ---KVVADGA-------------------GLPGEDWVFVSS 43
Query: 137 -DADINDKSLLDKIFNVVAFTHVMHLAAQAG-----VRYAMQNPNSYVESNIAGFVNLLE 190
DAD+ D + +F V THV+HLAA G ++Y + + N+ N+L
Sbjct: 44 KDADLTDTAQTRALFEKVQPTHVIHLAAMVGGLFRNIKYNL----DFWRKNVHMNDNVLH 99
Query: 191 TCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASL----YAATKKAGEAIAHAYN 246
+ + +V S+ ++ P E + P Y+ K+ + AY
Sbjct: 100 SAFEVGAR-KVVSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYF 158
Query: 247 HIYGLSITGLRFFTVYGP 264
YG + T + V+GP
Sbjct: 159 QQYGCTFTAVIPTNVFGP 176
>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
pdb|4B8W|B Chain B, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
Length = 319
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 76/198 (38%), Gaps = 38/198 (19%)
Query: 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVI- 136
+ + +LVTG +G VG + K DG GL VFV
Sbjct: 5 QSMRILVTGGSGLVGKAIQ---KVVADGA-------------------GLPGEDWVFVSS 42
Query: 137 -DADINDKSLLDKIFNVVAFTHVMHLAAQAG-----VRYAMQNPNSYVESNIAGFVNLLE 190
DAD+ D + +F V THV+HLAA G ++Y + + N+ N+L
Sbjct: 43 KDADLTDTAQTRALFEKVQPTHVIHLAAMVGGLFRNIKYNL----DFWRKNVHMNDNVLH 98
Query: 191 TCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASL----YAATKKAGEAIAHAYN 246
+ + +V S+ ++ P E + P Y+ K+ + AY
Sbjct: 99 SAFEVGAR-KVVSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYF 157
Query: 247 HIYGLSITGLRFFTVYGP 264
YG + T + V+GP
Sbjct: 158 QQYGCTFTAVIPTNVFGP 175
>pdb|3RFX|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
Length = 267
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 83/213 (38%), Gaps = 25/213 (11%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAG--VFVIDAD 139
+LVTGAAG +G + L + L+ A L+ AG + D
Sbjct: 6 LLVTGAAGQLGRVMRERLAPMAE--------------ILRLADLSPLDPAGPNEECVQCD 51
Query: 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNP-NSYVESNIAGFVNLLETCKSSDPQ 198
+ D + ++ + V ++HL +++ P ++ NI G NL E ++ Q
Sbjct: 52 LADANAVNAM--VAGCDGIVHLGG-----ISVEKPFEQILQGNIIGLYNLYEAARAHG-Q 103
Query: 199 PAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRF 258
P IV+ASS+ G + D +P L +K GE +A Y +G +R
Sbjct: 104 PRIVFASSNHTIGYYPQTERLGPDVPARPDGLAGVSKCFGENLARMYFDKFGQETALVRI 163
Query: 259 FTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAP 291
+ M +F+ D V+ AP
Sbjct: 164 GSCTPEPNNYRMLSTWFSHDDFVSLIEAVFRAP 196
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 19/112 (16%)
Query: 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVP 217
+H AA V A NP +++NI G N++ C + I ++
Sbjct: 95 CIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALST------------ 142
Query: 218 FSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITG---LRFFTVYGPWG 266
D+ P +LY ATK + + + N+ G S T +R+ V G G
Sbjct: 143 ----DKAANPINLYGATKLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRG 190
>pdb|3TQF|A Chain A, Structure Of The Hpr(Ser) KinasePHOSPHATASE FROM COXIELLA
BURNETII
pdb|3TQF|B Chain B, Structure Of The Hpr(Ser) KinasePHOSPHATASE FROM COXIELLA
BURNETII
Length = 181
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 82 VLVTGAAGFVGSHVSLALKKRG-----DGVLGLDNFNNYYETSLKKARKGLLERAGVFVI 136
VL+TG A S +SLAL RG D V+ L NN S G + G+ +I
Sbjct: 19 VLITGEANIGKSELSLALIDRGHQLVCDDVIDLKQENNQLIGSCPSVANGYILITGIGII 78
Query: 137 DA 138
D
Sbjct: 79 DV 80
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLG 108
G VLVTGA GFV SHV L + G V G
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRG 40
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLG 108
G VLVTGA GFV SHV L + G V G
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRG 40
>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|B Chain B, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|C Chain C, Hexameric Aps Kinase From Thiobacillus Denitrificans
Length = 552
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 29/162 (17%)
Query: 54 FRRHSSGG---PQWEK------QIVKSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKR-- 102
F+R G P+W ++ + T PR +G TV TG +G S ++ AL R
Sbjct: 335 FQRRMRAGLKIPEWYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLM 394
Query: 103 ---GDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159
G V LD R+ L G D+N + + + +
Sbjct: 395 EMGGRCVTLLDG---------DIVRRHLSSELGFSKAHRDVNVRRIGFVASEITKNRGIA 445
Query: 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNL-----LETCKSSD 196
A A R ++ + +E+ + GFV + +ETC+S D
Sbjct: 446 ICAPIAPYRQTRRDVRAMIEA-VGGFVEIHVATPIETCESRD 486
>pdb|3EUA|A Chain A, Crystal Structure Of A Putative Phosphosugar Isomerase
(Bsu32610) From Bacillus Subtilis At 1.90 A Resolution
pdb|3EUA|B Chain B, Crystal Structure Of A Putative Phosphosugar Isomerase
(Bsu32610) From Bacillus Subtilis At 1.90 A Resolution
pdb|3EUA|C Chain C, Crystal Structure Of A Putative Phosphosugar Isomerase
(Bsu32610) From Bacillus Subtilis At 1.90 A Resolution
pdb|3EUA|D Chain D, Crystal Structure Of A Putative Phosphosugar Isomerase
(Bsu32610) From Bacillus Subtilis At 1.90 A Resolution
pdb|3EUA|E Chain E, Crystal Structure Of A Putative Phosphosugar Isomerase
(Bsu32610) From Bacillus Subtilis At 1.90 A Resolution
pdb|3EUA|F Chain F, Crystal Structure Of A Putative Phosphosugar Isomerase
(Bsu32610) From Bacillus Subtilis At 1.90 A Resolution
pdb|3EUA|G Chain G, Crystal Structure Of A Putative Phosphosugar Isomerase
(Bsu32610) From Bacillus Subtilis At 1.90 A Resolution
pdb|3EUA|H Chain H, Crystal Structure Of A Putative Phosphosugar Isomerase
(Bsu32610) From Bacillus Subtilis At 1.90 A Resolution
Length = 329
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Query: 282 GKRITVYEAPDGASVARDFTYIDDIVKGCLAGL 314
GK++TV +A + DFT IDD VKG LA L
Sbjct: 270 GKKLTVLDA-----ASYDFTAIDDSVKGYLAPL 297
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGD 104
TVL+TGA GF+G ++ L L +R D
Sbjct: 75 TVLLTGATGFLGRYLVLELLRRLD 98
>pdb|3CH6|A Chain A, Crystal Structure Of 11beta-Hsd1 Double Mutant (L262r,
F278e) Complexed With (3,3-Dimethylpiperidin-1-Yl)(6-(3-
Fluoro-4-Methylphenyl)pyridin-2-Yl)methanone
pdb|3CH6|B Chain B, Crystal Structure Of 11beta-Hsd1 Double Mutant (L262r,
F278e) Complexed With (3,3-Dimethylpiperidin-1-Yl)(6-(3-
Fluoro-4-Methylphenyl)pyridin-2-Yl)methanone
pdb|3CH6|D Chain D, Crystal Structure Of 11beta-Hsd1 Double Mutant (L262r,
F278e) Complexed With (3,3-Dimethylpiperidin-1-Yl)(6-(3-
Fluoro-4-Methylphenyl)pyridin-2-Yl)methanone
pdb|3CH6|E Chain E, Crystal Structure Of 11beta-Hsd1 Double Mutant (L262r,
F278e) Complexed With (3,3-Dimethylpiperidin-1-Yl)(6-(3-
Fluoro-4-Methylphenyl)pyridin-2-Yl)methanone
pdb|3TFQ|A Chain A, Crystal Structure Of 11b-Hsd1 Double Mutant (L262r, F278e)
Complexed With
8-{[(2-Cyanopyridin-3-Yl)methyl]sulfanyl}-6-Hydroxy-3,
4-Dihydro- 1h-Pyrano[3,4-C]pyridine-5-Carbonitrile
pdb|3TFQ|B Chain B, Crystal Structure Of 11b-Hsd1 Double Mutant (L262r, F278e)
Complexed With
8-{[(2-Cyanopyridin-3-Yl)methyl]sulfanyl}-6-Hydroxy-3,
4-Dihydro- 1h-Pyrano[3,4-C]pyridine-5-Carbonitrile
pdb|3TFQ|D Chain D, Crystal Structure Of 11b-Hsd1 Double Mutant (L262r, F278e)
Complexed With
8-{[(2-Cyanopyridin-3-Yl)methyl]sulfanyl}-6-Hydroxy-3,
4-Dihydro- 1h-Pyrano[3,4-C]pyridine-5-Carbonitrile
pdb|3TFQ|E Chain E, Crystal Structure Of 11b-Hsd1 Double Mutant (L262r, F278e)
Complexed With
8-{[(2-Cyanopyridin-3-Yl)methyl]sulfanyl}-6-Hydroxy-3,
4-Dihydro- 1h-Pyrano[3,4-C]pyridine-5-Carbonitrile
Length = 286
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 59 SGGPQWEKQIVKSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVL 107
+GG Q + + RP +G V+VTGA+ +G ++ L K G V+
Sbjct: 8 TGGQQMGRGSNEEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVV 56
>pdb|3P5J|C Chain C, The Structure Of The Human Rnase H2 Complex Defines Key
Interaction Interfaces Relevant To Enzyme Function And
Human Disease
Length = 166
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 56 RHSSGGPQWEKQIVKSTRPRSTRGLTVLVT-GAAGFVGSHVSLALKKRGDGVLGLDNFNN 114
RH + G Q S R R RG V V G AGFV + +++G+G++G NF+
Sbjct: 53 RHDADGLQ------ASFRGRGLRGEEVAVPPGFAGFV-----MVTEEKGEGLIGKLNFSG 101
Query: 115 YYETSLKKARKGL 127
E +A++ L
Sbjct: 102 DAEDKADEAQEPL 114
>pdb|2YDX|A Chain A, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
pdb|2YDX|B Chain B, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
pdb|2YDX|C Chain C, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
pdb|2YDX|D Chain D, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
pdb|2YDX|E Chain E, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
Length = 315
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 31/185 (16%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYE--TSLKKARKGLLERAGVFVIDAD 139
VLVTGA G +G V ++ NN++ ++AR + +
Sbjct: 5 VLVTGATGLLGRAVHKEFQQ-----------NNWHAVGCGFRRARPKFEQ--------VN 45
Query: 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP 199
+ D + + I + ++H AA+ P++ + N+ NL + +++
Sbjct: 46 LLDSNAVHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNLAK--EAAAVGA 103
Query: 200 AIVWASSSSVY-GVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRF 258
+++ SS V+ G N P+ E+D P +LY TK GE N L LR
Sbjct: 104 FLIYISSDYVFDGTNP--PYREED-IPAPLNLYGKTKLDGEKAVLENN----LGAAVLRI 156
Query: 259 FTVYG 263
+YG
Sbjct: 157 PILYG 161
>pdb|2NM0|A Chain A, Crystal Structure Of Sco1815: A Beta-Ketoacyl-Acyl Carrier
Protein Reductase From Streptomyces Coelicolor A3(2)
pdb|2NM0|B Chain B, Crystal Structure Of Sco1815: A Beta-Ketoacyl-Acyl Carrier
Protein Reductase From Streptomyces Coelicolor A3(2)
Length = 253
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 23/120 (19%)
Query: 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGV 133
PRS +VLVTG +G ++ A GD V E G
Sbjct: 16 PRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPE--------------GF 61
Query: 134 FVIDADINDKSLLDKIFNVVAFTH--VMHLAAQAGV-------RYAMQNPNSYVESNIAG 184
+ DI D +++ + + TH V L A AGV R + ++ S VE+N+ G
Sbjct: 62 LAVKCDITDTEQVEQAYKEIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTG 121
>pdb|2YDY|A Chain A, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit In Orthorhombic Crystal Form
Length = 315
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 31/185 (16%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYE--TSLKKARKGLLERAGVFVIDAD 139
VLVTGA G +G V ++ NN++ ++AR + +
Sbjct: 5 VLVTGATGLLGRAVHKEFQQ-----------NNWHAVGCGFRRARPKFEQ--------VN 45
Query: 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP 199
+ D + + I + ++H AA+ P++ + N+ NL + +++
Sbjct: 46 LLDSNAVHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNLAK--EAAAVGA 103
Query: 200 AIVWASSSSVY-GVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRF 258
+++ SS V+ G N P+ E+D P +LY TK GE N L LR
Sbjct: 104 FLIYISSDYVFDGTNP--PYREED-IPAPLNLYGKTKLDGEKAVLENN----LGAAVLRI 156
Query: 259 FTVYG 263
+YG
Sbjct: 157 PILYG 161
>pdb|1QO8|A Chain A, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
pdb|1QO8|D Chain D, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
Length = 566
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 46 ISPSPSATFRRHSSGGPQWEKQIVK---STRPRSTRGLTVLVTGAAGFVGSHVSLALKKR 102
I P P + ++ S W++ ++ + P T + V+ G+AGF + SLA KK
Sbjct: 87 IKPMPFSDAKKKKSWDDGWDQDKIQKAIAAGPSETTQVLVVGAGSAGF---NASLAAKKA 143
Query: 103 GDGVLGLD 110
G V+ +D
Sbjct: 144 GANVILVD 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,128,345
Number of Sequences: 62578
Number of extensions: 473446
Number of successful extensions: 1637
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1397
Number of HSP's gapped (non-prelim): 127
length of query: 424
length of database: 14,973,337
effective HSP length: 101
effective length of query: 323
effective length of database: 8,652,959
effective search space: 2794905757
effective search space used: 2794905757
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)