Query 042413
Match_columns 350
No_of_seqs 364 out of 2593
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 05:57:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042413.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042413hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.3E-56 2.9E-61 453.5 19.7 332 1-348 271-673 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.7E-36 3.8E-41 320.7 21.6 297 1-332 306-696 (1153)
3 PF00931 NB-ARC: NB-ARC domain 99.9 2.1E-23 4.6E-28 189.9 3.6 124 1-133 111-284 (287)
4 KOG0617 Ras suppressor protein 99.3 1.9E-14 4E-19 116.3 -4.7 136 198-343 57-196 (264)
5 KOG0444 Cytoskeletal regulator 99.3 5.5E-14 1.2E-18 133.5 -2.7 146 197-349 55-203 (1255)
6 PLN00113 leucine-rich repeat r 99.3 3.1E-12 6.6E-17 135.3 8.3 128 197-330 118-249 (968)
7 KOG0617 Ras suppressor protein 99.3 4.6E-14 1E-18 114.0 -4.9 144 196-349 32-179 (264)
8 PLN00113 leucine-rich repeat r 99.2 1.6E-11 3.6E-16 129.8 7.8 106 221-330 189-297 (968)
9 KOG0444 Cytoskeletal regulator 99.2 1E-12 2.2E-17 125.0 -3.9 125 221-349 198-322 (1255)
10 KOG0472 Leucine-rich repeat pr 99.0 1.4E-11 3E-16 111.8 -2.9 94 237-330 424-541 (565)
11 PF14580 LRR_9: Leucine-rich r 99.0 3.7E-10 8E-15 94.2 4.0 105 221-332 20-128 (175)
12 PLN03210 Resistant to P. syrin 98.9 5.4E-09 1.2E-13 112.0 10.3 125 196-329 588-716 (1153)
13 KOG0472 Leucine-rich repeat pr 98.9 5.3E-10 1.1E-14 101.7 1.7 85 221-311 436-544 (565)
14 PF14580 LRR_9: Leucine-rich r 98.8 2.4E-09 5.2E-14 89.3 3.4 126 196-327 18-150 (175)
15 KOG4194 Membrane glycoprotein 98.8 4.5E-09 9.7E-14 99.9 5.1 145 197-346 102-251 (873)
16 KOG0618 Serine/threonine phosp 98.8 1.2E-09 2.6E-14 108.5 -0.2 125 197-329 359-488 (1081)
17 KOG4658 Apoptotic ATPase [Sign 98.7 7.9E-09 1.7E-13 106.4 5.0 129 210-348 515-647 (889)
18 PLN03150 hypothetical protein; 98.7 2.8E-08 6E-13 99.8 8.2 103 222-328 420-526 (623)
19 PLN03150 hypothetical protein; 98.7 2.8E-08 6E-13 99.8 6.9 84 249-332 419-505 (623)
20 KOG1259 Nischarin, modulator o 98.7 3.2E-09 7E-14 93.4 -0.1 128 197-333 284-415 (490)
21 KOG4194 Membrane glycoprotein 98.7 1.1E-08 2.3E-13 97.3 2.6 128 197-330 173-306 (873)
22 PF13855 LRR_8: Leucine rich r 98.6 2.8E-08 6.1E-13 68.1 3.4 56 249-304 2-59 (61)
23 PRK15370 E3 ubiquitin-protein 98.6 6.8E-08 1.5E-12 98.1 6.6 116 196-327 198-314 (754)
24 PF13855 LRR_8: Leucine rich r 98.6 4.3E-08 9.4E-13 67.2 3.1 58 271-328 1-60 (61)
25 PRK15387 E3 ubiquitin-protein 98.6 4.9E-08 1.1E-12 98.8 4.6 79 248-332 382-460 (788)
26 PRK15370 E3 ubiquitin-protein 98.5 2.5E-07 5.4E-12 94.0 8.9 120 197-332 178-298 (754)
27 KOG0532 Leucine-rich repeat (L 98.5 1.4E-08 3.1E-13 96.2 -2.1 125 199-331 123-248 (722)
28 KOG0618 Serine/threonine phosp 98.5 2.8E-08 6E-13 99.1 -0.3 90 243-332 40-129 (1081)
29 PRK15387 E3 ubiquitin-protein 98.4 6.1E-07 1.3E-11 91.0 8.2 59 250-311 284-359 (788)
30 PF12799 LRR_4: Leucine Rich r 98.4 3.3E-07 7.2E-12 58.1 3.8 39 272-310 2-40 (44)
31 KOG1259 Nischarin, modulator o 98.4 4.8E-08 1E-12 86.1 -0.4 119 221-347 285-403 (490)
32 KOG0532 Leucine-rich repeat (L 98.4 5.1E-08 1.1E-12 92.6 -1.0 122 199-327 145-270 (722)
33 cd00116 LRR_RI Leucine-rich re 98.3 5.1E-07 1.1E-11 83.1 5.1 109 221-329 138-262 (319)
34 PF12799 LRR_4: Leucine Rich r 98.3 4.6E-07 1E-11 57.4 3.0 41 248-288 1-41 (44)
35 KOG4237 Extracellular matrix p 98.3 9.5E-08 2.1E-12 87.1 -0.5 123 221-349 68-194 (498)
36 cd00116 LRR_RI Leucine-rich re 98.3 3.4E-07 7.3E-12 84.3 3.1 132 197-330 81-234 (319)
37 COG4886 Leucine-rich repeat (L 98.2 6.1E-07 1.3E-11 85.4 2.4 79 249-327 141-219 (394)
38 COG4886 Leucine-rich repeat (L 98.2 7.3E-07 1.6E-11 84.9 2.8 86 246-331 184-269 (394)
39 KOG3207 Beta-tubulin folding c 98.1 7E-07 1.5E-11 82.5 1.3 129 198-329 173-313 (505)
40 KOG3665 ZYG-1-like serine/thre 98.1 2E-06 4.4E-11 86.6 4.3 130 197-330 122-263 (699)
41 KOG4579 Leucine-rich repeat (L 98.1 1.1E-06 2.4E-11 69.0 0.6 88 221-312 54-141 (177)
42 KOG3207 Beta-tubulin folding c 97.9 3.6E-06 7.8E-11 77.9 0.6 128 197-328 121-282 (505)
43 KOG4237 Extracellular matrix p 97.9 1.2E-06 2.6E-11 80.0 -2.4 95 249-343 68-167 (498)
44 KOG4579 Leucine-rich repeat (L 97.8 2.7E-06 5.9E-11 66.9 -0.7 87 243-329 48-135 (177)
45 PRK15386 type III secretion pr 97.8 3.2E-05 6.9E-10 72.6 5.6 113 197-327 52-187 (426)
46 KOG1859 Leucine-rich repeat pr 97.7 1.4E-06 3.1E-11 85.2 -5.4 85 242-328 181-265 (1096)
47 KOG1859 Leucine-rich repeat pr 97.6 3.3E-06 7.2E-11 82.7 -3.9 104 221-332 188-294 (1096)
48 KOG3665 ZYG-1-like serine/thre 97.6 2.8E-05 6.1E-10 78.6 2.3 108 221-331 123-234 (699)
49 KOG0531 Protein phosphatase 1, 97.5 2.9E-05 6.4E-10 74.4 1.3 103 221-330 96-199 (414)
50 PRK15386 type III secretion pr 97.4 0.00021 4.5E-09 67.2 5.3 79 216-312 50-133 (426)
51 KOG1644 U2-associated snRNP A' 97.3 0.00021 4.5E-09 60.0 3.8 85 242-326 58-149 (233)
52 KOG1909 Ran GTPase-activating 97.3 0.00021 4.6E-09 64.6 3.3 133 195-329 155-310 (382)
53 KOG0531 Protein phosphatase 1, 97.2 0.00012 2.6E-09 70.2 0.8 89 242-332 89-177 (414)
54 KOG1644 U2-associated snRNP A' 97.0 0.00092 2E-08 56.3 4.7 85 248-333 42-129 (233)
55 KOG2739 Leucine-rich acidic nu 96.8 0.0005 1.1E-08 60.0 1.2 84 242-326 59-152 (260)
56 KOG2739 Leucine-rich acidic nu 96.7 0.00078 1.7E-08 58.8 1.7 39 246-284 89-129 (260)
57 PF00560 LRR_1: Leucine Rich R 96.6 0.00072 1.6E-08 35.8 0.7 17 273-289 2-18 (22)
58 KOG2982 Uncharacterized conser 96.6 0.00053 1.2E-08 61.0 -0.1 87 221-309 72-161 (418)
59 KOG2982 Uncharacterized conser 96.6 0.001 2.2E-08 59.2 1.6 35 247-281 120-156 (418)
60 PF00560 LRR_1: Leucine Rich R 96.6 0.00096 2.1E-08 35.3 0.8 22 295-316 1-22 (22)
61 KOG2123 Uncharacterized conser 96.4 0.00015 3.3E-09 63.7 -4.3 96 221-323 20-123 (388)
62 KOG1909 Ran GTPase-activating 96.4 0.0034 7.4E-08 57.0 4.0 111 220-330 157-283 (382)
63 KOG2120 SCF ubiquitin ligase, 96.4 0.00043 9.3E-09 61.6 -1.8 126 197-328 210-349 (419)
64 KOG2123 Uncharacterized conser 96.4 0.00031 6.6E-09 61.9 -2.7 82 247-330 18-101 (388)
65 KOG0473 Leucine-rich repeat pr 96.2 0.00016 3.4E-09 62.1 -5.6 87 242-328 36-122 (326)
66 PRK04841 transcriptional regul 95.6 0.1 2.2E-06 55.3 11.4 149 8-180 141-332 (903)
67 PF13504 LRR_7: Leucine rich r 95.4 0.011 2.3E-07 29.1 1.4 16 295-310 2-17 (17)
68 PF13504 LRR_7: Leucine rich r 95.1 0.013 2.8E-07 28.7 1.2 16 272-287 2-17 (17)
69 KOG2120 SCF ubiquitin ligase, 95.0 0.0012 2.5E-08 58.9 -4.7 204 93-329 98-325 (419)
70 KOG0473 Leucine-rich repeat pr 93.6 0.0019 4.1E-08 55.6 -6.0 83 260-345 30-113 (326)
71 smart00369 LRR_TYP Leucine-ric 93.5 0.071 1.5E-06 29.1 2.1 19 294-312 2-20 (26)
72 smart00370 LRR Leucine-rich re 93.5 0.071 1.5E-06 29.1 2.1 19 294-312 2-20 (26)
73 smart00370 LRR Leucine-rich re 93.2 0.067 1.4E-06 29.2 1.7 21 270-290 1-21 (26)
74 smart00369 LRR_TYP Leucine-ric 93.2 0.067 1.4E-06 29.2 1.7 21 270-290 1-21 (26)
75 PF13306 LRR_5: Leucine rich r 92.1 0.38 8.2E-06 37.5 5.5 97 221-326 13-112 (129)
76 COG5238 RNA1 Ran GTPase-activa 90.9 0.11 2.5E-06 46.0 1.4 39 269-307 90-133 (388)
77 COG5238 RNA1 Ran GTPase-activa 90.6 0.46 9.9E-06 42.3 4.8 48 212-261 86-133 (388)
78 PF13306 LRR_5: Leucine rich r 90.4 0.39 8.5E-06 37.4 4.0 85 240-327 4-91 (129)
79 KOG3864 Uncharacterized conser 84.9 0.21 4.5E-06 42.4 -0.8 34 293-326 150-185 (221)
80 COG2909 MalT ATP-dependent tra 84.2 3.9 8.3E-05 42.2 7.5 147 12-182 153-340 (894)
81 PF05729 NACHT: NACHT domain 84.1 1.6 3.4E-05 35.4 4.2 40 17-66 118-160 (166)
82 smart00364 LRR_BAC Leucine-ric 83.5 0.74 1.6E-05 25.2 1.3 17 295-311 3-19 (26)
83 KOG1947 Leucine rich repeat pr 75.7 0.89 1.9E-05 44.0 0.0 106 221-328 189-306 (482)
84 smart00365 LRR_SD22 Leucine-ri 73.3 2.3 5E-05 23.3 1.3 12 272-283 3-14 (26)
85 PF13516 LRR_6: Leucine Rich r 70.4 1.4 3.1E-05 23.3 0.1 9 296-304 4-12 (24)
86 KOG1947 Leucine rich repeat pr 69.2 2 4.3E-05 41.6 0.7 110 214-325 210-329 (482)
87 PRK06893 DNA replication initi 62.2 9.8 0.00021 33.2 3.7 66 4-79 107-186 (229)
88 PRK00080 ruvB Holliday junctio 58.7 49 0.0011 30.5 7.9 119 19-154 151-309 (328)
89 smart00368 LRR_RI Leucine rich 58.0 7.1 0.00015 21.6 1.4 12 249-260 3-14 (28)
90 smart00367 LRR_CC Leucine-rich 55.2 8.5 0.00018 20.7 1.4 14 294-307 2-16 (26)
91 KOG4341 F-box protein containi 51.9 7.9 0.00017 36.7 1.4 106 221-328 321-437 (483)
92 TIGR00635 ruvB Holliday juncti 50.0 84 0.0018 28.4 7.9 120 19-154 130-288 (305)
93 KOG3864 Uncharacterized conser 49.1 4.7 0.0001 34.4 -0.5 62 242-303 119-185 (221)
94 COG5439 Uncharacterized conser 42.6 12 0.00027 27.3 0.9 19 332-350 87-105 (112)
95 PRK05564 DNA polymerase III su 37.6 92 0.002 28.5 6.1 57 1-66 105-162 (313)
96 PF14162 YozD: YozD-like prote 36.4 38 0.00082 21.8 2.3 20 136-155 11-30 (57)
97 KOG3763 mRNA export factor TAP 35.3 22 0.00049 35.0 1.7 82 243-325 213-309 (585)
98 PF13730 HTH_36: Helix-turn-he 33.3 1.3E+02 0.0028 19.1 4.9 51 95-152 2-55 (55)
99 KOG4341 F-box protein containi 28.9 39 0.00085 32.3 2.1 88 242-329 314-413 (483)
100 KOG3763 mRNA export factor TAP 28.0 31 0.00066 34.1 1.3 61 221-284 219-283 (585)
101 PF00610 DEP: Domain found in 25.8 2.2E+02 0.0048 19.4 5.4 42 115-158 17-60 (74)
102 KOG4233 DNA-bridging protein B 25.4 1.9E+02 0.0042 20.5 4.5 33 47-84 20-52 (90)
103 COG1373 Predicted ATPase (AAA+ 24.9 98 0.0021 29.5 4.1 142 3-156 106-271 (398)
104 PRK07471 DNA polymerase III su 24.5 1.9E+02 0.0042 27.2 6.0 57 1-66 153-210 (365)
105 KOG4308 LRR-containing protein 24.0 4.8 0.0001 39.4 -5.0 15 290-304 286-300 (478)
106 KOG4308 LRR-containing protein 23.8 3.5 7.7E-05 40.3 -6.0 110 221-330 116-246 (478)
107 PF12802 MarR_2: MarR family; 22.9 2.2E+02 0.0048 18.3 6.5 59 95-161 2-60 (62)
108 cd04443 DEP_GPR155 DEP (Dishev 22.1 2.6E+02 0.0055 20.1 4.9 39 117-157 32-70 (83)
109 PF13173 AAA_14: AAA domain 20.9 1.4E+02 0.003 23.0 3.7 52 5-60 75-126 (128)
110 smart00049 DEP Domain found in 20.4 2.8E+02 0.0061 19.0 4.9 40 116-157 21-60 (77)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-56 Score=453.49 Aligned_cols=332 Identities=24% Similarity=0.382 Sum_probs=286.5
Q ss_pred CChhhHHHHHhhcCCCCCCcEEEEEeCChHHHhh-cccccCCCCCCCceEEcCCCCCChhhhhhccc---ccc-------
Q 042413 1 MTFQQWDNLEQVLPDNQNGSRVLITVTDPELLLS-LEMENGEKIRPDSVLNGGPMIRLKHESWQFFI---LHY------- 69 (350)
Q Consensus 1 ~~~~~w~~l~~~l~~~~~GSrIivTTR~~~v~~~-~~~~~~~~~~~~~~~~l~~L~~~~~~s~~Lf~---f~~------- 69 (350)
|+..+|+.+..++|...+||||++|||++.||.. |++. ..+++++|. ++|||+||+ |..
T Consensus 271 W~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~--------~~~~v~~L~--~~eaW~LF~~~v~~~~~~~~~~ 340 (889)
T KOG4658|consen 271 WEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVD--------YPIEVECLT--PEEAWDLFQKKVGPNTLGSHPD 340 (889)
T ss_pred cccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCC--------ccccccccC--ccccHHHHHHhhcccccccccc
Confidence 8899999999999999999999999999999998 7765 999999999 999999999 433
Q ss_pred ------------CCchhHHHHHHHHHH-----HHHHhhhc------------------------cCCCChhhHHHHhhhh
Q 042413 70 ------------GSMPLENYFLGEAFL-----TVWRQIYT------------------------VMELPFHLKVCCIYLC 108 (350)
Q Consensus 70 ------------~GlPLai~~lg~~L~-----~~W~~~l~------------------------y~~L~~~lk~cfl~~a 108 (350)
+|+|||+++||++|+ ++|+++.+ ||+||+++|.||+|||
T Consensus 341 i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLyca 420 (889)
T KOG4658|consen 341 IEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCA 420 (889)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhc
Confidence 999999999999999 88999887 9999999999999999
Q ss_pred cCCCCceeeHHHHHHHHHHcCCCCCC--C---hhHHHHHHHHHHHcCcceeeecCCCCCeeEEEeCHHHHHHHHHHhh--
Q 042413 109 VFPPSIEISTRQLYQLWVAEGFIPYN--G---EETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAE-- 181 (350)
Q Consensus 109 ~Fp~~~~i~~~~li~~w~a~g~i~~~--~---e~~~~~~~~~Lv~r~li~~~~~~~~g~~~~~~mhdli~dl~~~i~~-- 181 (350)
+|||||.|++++||.+|+||||+.+. + ++.|+.|+++|+++++++..... ++..+|+|||+|||+|..+++
T Consensus 421 lFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~ 498 (889)
T KOG4658|consen 421 LFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDF 498 (889)
T ss_pred cCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccc
Confidence 99999999999999999999999885 3 99999999999999999987754 677899999999999999999
Q ss_pred ---hcCcEEecC-CCC----C-CCCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceee
Q 042413 182 ---KTGFVWMPD-MEE----E-SLANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLR 251 (350)
Q Consensus 182 ---~~~~~~~~~-~~~----~-~~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~ 251 (350)
+++.+...+ ... . ....+|++++.++.. ..+.....+ +++||.+.++... .......+|..++.|+
T Consensus 499 ~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~--~L~tLll~~n~~~--l~~is~~ff~~m~~Lr 574 (889)
T KOG4658|consen 499 GKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENP--KLRTLLLQRNSDW--LLEISGEFFRSLPLLR 574 (889)
T ss_pred cccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCC--ccceEEEeecchh--hhhcCHHHHhhCcceE
Confidence 666444432 111 1 457899999999998 677777888 9999999998620 2456677899999999
Q ss_pred EEEccCCC-CCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCC-cCcccchhccccccCcEEEeeccCC
Q 042413 252 VLNLGSAV-LDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSS-YIDQSPHDIWMMQKLMHLYFYCISP 329 (350)
Q Consensus 252 ~L~L~~~~-l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~-~l~~lP~~i~~L~~L~~L~l~~~~~ 329 (350)
+|||++|. +.++|.+|+.|.|||||+++++.++.+|.++++|..|++||+..+ .+..+|..+..|++|++|.+.....
T Consensus 575 VLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~ 654 (889)
T KOG4658|consen 575 VLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL 654 (889)
T ss_pred EEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccc
Confidence 99999887 889999999999999999999999999999999999999999999 6677777777799999999976542
Q ss_pred CCCCCCccccccccccccc
Q 042413 330 CTSKNYSSSLKNLIFISAL 348 (350)
Q Consensus 330 ~~~~~~~~~l~~L~~L~~L 348 (350)
.........+.+|++|+.+
T Consensus 655 ~~~~~~l~el~~Le~L~~l 673 (889)
T KOG4658|consen 655 SNDKLLLKELENLEHLENL 673 (889)
T ss_pred ccchhhHHhhhcccchhhh
Confidence 2222244455555555544
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.7e-36 Score=320.67 Aligned_cols=297 Identities=18% Similarity=0.152 Sum_probs=225.1
Q ss_pred CChhhHHHHHhhcCCCCCCcEEEEEeCChHHHhhcccccCCCCCCCceEEcCCCCCChhhhhhccc---ccc--------
Q 042413 1 MTFQQWDNLEQVLPDNQNGSRVLITVTDPELLLSLEMENGEKIRPDSVLNGGPMIRLKHESWQFFI---LHY-------- 69 (350)
Q Consensus 1 ~~~~~w~~l~~~l~~~~~GSrIivTTR~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~s~~Lf~---f~~-------- 69 (350)
|+.+.|+.+.......++|||||||||+++|+..+++. .+|+++.|+ +++||+||+ |++
T Consensus 306 ~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~--------~~~~v~~l~--~~ea~~LF~~~Af~~~~~~~~~~ 375 (1153)
T PLN03210 306 DDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGID--------HIYEVCLPS--NELALEMFCRSAFKKNSPPDGFM 375 (1153)
T ss_pred CCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCC--------eEEEecCCC--HHHHHHHHHHHhcCCCCCcHHHH
Confidence 67788999887766667899999999999999888776 899999999 999999999 754
Q ss_pred ----------CCchhHHHHHHHHHH----HHHHhhhc-----------------cCCCCh-hhHHHHhhhhcCCCCceee
Q 042413 70 ----------GSMPLENYFLGEAFL----TVWRQIYT-----------------VMELPF-HLKVCCIYLCVFPPSIEIS 117 (350)
Q Consensus 70 ----------~GlPLai~~lg~~L~----~~W~~~l~-----------------y~~L~~-~lk~cfl~~a~Fp~~~~i~ 117 (350)
+|+|||++++|+.|+ .+|+.+++ |++|++ ..|.||+||||||++..+
T Consensus 376 ~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~- 454 (1153)
T PLN03210 376 ELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV- 454 (1153)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH-
Confidence 999999999999999 89998876 999987 599999999999998754
Q ss_pred HHHHHHHHHHcCCCCCCChhHHHHHHHHHHHcCcceeeecCCCCCeeEEEeCHHHHHHHHHHhhhcC-------cEEecC
Q 042413 118 TRQLYQLWVAEGFIPYNGEETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTG-------FVWMPD 190 (350)
Q Consensus 118 ~~~li~~w~a~g~i~~~~e~~~~~~~~~Lv~r~li~~~~~~~~g~~~~~~mhdli~dl~~~i~~~~~-------~~~~~~ 190 (350)
+.+..|.|.+.... +..++.|+++|||+... ..++|||++|+||+++++++. +....+
T Consensus 455 --~~v~~~l~~~~~~~------~~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~ 519 (1153)
T PLN03210 455 --NDIKLLLANSDLDV------NIGLKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAK 519 (1153)
T ss_pred --HHHHHHHHhcCCCc------hhChHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHH
Confidence 34777888765533 33488999999998743 358999999999999997753 111110
Q ss_pred C------CCCCCCCeeEEEEecCccc---h--hhccCCCCCCeeEEEE-------------------------------e
Q 042413 191 M------EEESLANVKRCFILKDLID---F--FSSLKHSDMYLQSFLN-------------------------------H 228 (350)
Q Consensus 191 ~------~~~~~~~~r~L~l~~~~~~---~--~~~~~~~~~~Lr~L~~-------------------------------~ 228 (350)
+ ......+++.+++...... + .....+. +|+.|.+ .
T Consensus 520 di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~--~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~ 597 (1153)
T PLN03210 520 DICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMR--NLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWD 597 (1153)
T ss_pred HHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCc--cccEEEEecccccccccceeecCcchhhcCcccEEEEec
Confidence 0 0012245566655433321 1 1112233 4444444 3
Q ss_pred cCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCC-CcccchhhhcCcCCCEEEccCC-cC
Q 042413 229 SSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPS-LKCLHSLLCTLLNLETLEMPSS-YI 306 (350)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~-l~~lP~~i~~l~~L~~L~l~~~-~l 306 (350)
++.. . .+|..| .+.+|+.|++++|.++.+|..+..+++|++|+|+++. +..+|. ++.+++|++|++++| .+
T Consensus 598 ~~~l----~-~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L 670 (1153)
T PLN03210 598 KYPL----R-CMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSL 670 (1153)
T ss_pred CCCC----C-CCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCc
Confidence 3332 1 122223 4578888999998888888888899999999999865 677874 888999999999999 88
Q ss_pred cccchhccccccCcEEEeeccCCCCC
Q 042413 307 DQSPHDIWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 307 ~~lP~~i~~L~~L~~L~l~~~~~~~~ 332 (350)
.++|.+++++++|+.|++++|.....
T Consensus 671 ~~lp~si~~L~~L~~L~L~~c~~L~~ 696 (1153)
T PLN03210 671 VELPSSIQYLNKLEDLDMSRCENLEI 696 (1153)
T ss_pred cccchhhhccCCCCEEeCCCCCCcCc
Confidence 99999999999999999988754443
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.87 E-value=2.1e-23 Score=189.89 Aligned_cols=124 Identities=29% Similarity=0.548 Sum_probs=97.7
Q ss_pred CChhhHHHHHhhcCCCCCCcEEEEEeCChHHHhhcccccCCCCCCCceEEcCCCCCChhhhhhccc---ccc--------
Q 042413 1 MTFQQWDNLEQVLPDNQNGSRVLITVTDPELLLSLEMENGEKIRPDSVLNGGPMIRLKHESWQFFI---LHY-------- 69 (350)
Q Consensus 1 ~~~~~w~~l~~~l~~~~~GSrIivTTR~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~s~~Lf~---f~~-------- 69 (350)
|+...|+.+...++....||+||||||++.|+..++... ..|++++|+ ++||++||+ +..
T Consensus 111 ~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~-------~~~~l~~L~--~~ea~~L~~~~~~~~~~~~~~~~ 181 (287)
T PF00931_consen 111 WDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTD-------KVIELEPLS--EEEALELFKKRAGRKESESPEDL 181 (287)
T ss_dssp -SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCE-------EEEECSS----HHHHHHHHHHHHTSHS----TTS
T ss_pred ccccccccccccccccccccccccccccccccccccccc-------ccccccccc--ccccccccccccccccccccccc
Confidence 677889999988888888999999999999998876522 889999999 999999999 211
Q ss_pred -----------CCchhHHHHHHHHHH-----HHHHhhhc-----------------------cCCCChhhHHHHhhhhcC
Q 042413 70 -----------GSMPLENYFLGEAFL-----TVWRQIYT-----------------------VMELPFHLKVCCIYLCVF 110 (350)
Q Consensus 70 -----------~GlPLai~~lg~~L~-----~~W~~~l~-----------------------y~~L~~~lk~cfl~~a~F 110 (350)
+|+|||++++|++|+ .+|+.+++ |+.||+++|+||+|||+|
T Consensus 182 ~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f 261 (287)
T PF00931_consen 182 EDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIF 261 (287)
T ss_dssp CTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGS
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCccHHHHHhhCcCC
Confidence 999999999999996 67777664 999999999999999999
Q ss_pred CCCceeeHHHHHHHHHHcCCCCC
Q 042413 111 PPSIEISTRQLYQLWVAEGFIPY 133 (350)
Q Consensus 111 p~~~~i~~~~li~~w~a~g~i~~ 133 (350)
|+++.|+++.|+++|+++|||..
T Consensus 262 ~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 262 PEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp GTTS-EEHHHHHHHHTT-HHTC-
T ss_pred CCCceECHHHHHHHHHHCCCCcc
Confidence 99999999999999999999976
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.35 E-value=1.9e-14 Score=116.27 Aligned_cols=136 Identities=20% Similarity=0.180 Sum_probs=107.7
Q ss_pred CeeEEEEecCcc-chhhcc-CCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC--cCccccCCCCCC
Q 042413 198 NVKRCFILKDLI-DFFSSL-KHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD--QYPSGLENLYLL 273 (350)
Q Consensus 198 ~~r~L~l~~~~~-~~~~~~-~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L 273 (350)
++..|.+.++.+ +.|..+ .++ +||.|.+.-+.. ...|..|+.++.|++|||++|++. .+|..+..+.-|
T Consensus 57 nlevln~~nnqie~lp~~issl~--klr~lnvgmnrl-----~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tl 129 (264)
T KOG0617|consen 57 NLEVLNLSNNQIEELPTSISSLP--KLRILNVGMNRL-----NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTL 129 (264)
T ss_pred hhhhhhcccchhhhcChhhhhch--hhhheecchhhh-----hcCccccCCCchhhhhhccccccccccCCcchhHHHHH
Confidence 344555555555 444433 444 777777765554 356778899999999999999877 789989889999
Q ss_pred CeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCcccccccc
Q 042413 274 KYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLI 343 (350)
Q Consensus 274 ~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 343 (350)
+-|.|++|.++-+|+.+++|++||.|.++.|.+-++|..++.|+.|+.|++.+|.... +|+.+++|.
T Consensus 130 ralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~v---lppel~~l~ 196 (264)
T KOG0617|consen 130 RALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTV---LPPELANLD 196 (264)
T ss_pred HHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeee---cChhhhhhh
Confidence 9999999999999999999999999999999999999999999999999998885443 555665553
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.34 E-value=5.5e-14 Score=133.46 Aligned_cols=146 Identities=18% Similarity=0.181 Sum_probs=116.8
Q ss_pred CCeeEEEEecCcc-c-hhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCC
Q 042413 197 ANVKRCFILKDLI-D-FFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLK 274 (350)
Q Consensus 197 ~~~r~L~l~~~~~-~-~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~ 274 (350)
.++.||++.++.. . .-...+++ .||++++..+... ..++ |..+..+..|.+||||.|++.++|..+..-+++-
T Consensus 55 qkLEHLs~~HN~L~~vhGELs~Lp--~LRsv~~R~N~LK--nsGi-P~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~i 129 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELSDLP--RLRSVIVRDNNLK--NSGI-PTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSI 129 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhccch--hhHHHhhhccccc--cCCC-CchhcccccceeeecchhhhhhcchhhhhhcCcE
Confidence 4677888887776 2 23344666 9999999988875 2344 4556679999999999999999999999999999
Q ss_pred eeeeeCCCCcccchhh-hcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCcccccccccccccC
Q 042413 275 YLKLNIPSLKCLHSLL-CTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISALH 349 (350)
Q Consensus 275 ~L~l~~~~l~~lP~~i-~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~ 349 (350)
.|+||+|+|..+|.++ -+|..|-.|||++|.+..+|+.+.+|..|+.|++++|...-. ....++.+++|++||
T Consensus 130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hf--QLrQLPsmtsL~vLh 203 (1255)
T KOG0444|consen 130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHF--QLRQLPSMTSLSVLH 203 (1255)
T ss_pred EEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHH--HHhcCccchhhhhhh
Confidence 9999999999999876 578899999999999999999999999999999998854332 344566677777665
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.31 E-value=3.1e-12 Score=135.27 Aligned_cols=128 Identities=20% Similarity=0.213 Sum_probs=77.3
Q ss_pred CCeeEEEEecCccc-hhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC-cCccccCCCCCCC
Q 042413 197 ANVKRCFILKDLID-FFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD-QYPSGLENLYLLK 274 (350)
Q Consensus 197 ~~~r~L~l~~~~~~-~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~ 274 (350)
.++|+|.+..+... ......++ +|++|.+.++.. ....+..+.++++|++|+|++|.+. .+|..++++++|+
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~~~l~--~L~~L~Ls~n~~----~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 191 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPRGSIP--NLETLDLSNNML----SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE 191 (968)
T ss_pred CCCCEEECcCCccccccCccccC--CCCEEECcCCcc----cccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCC
Confidence 45566666555441 11112233 666666666554 2334455666777777777777654 5666677777777
Q ss_pred eeeeeCCCCc-ccchhhhcCcCCCEEEccCCcC-cccchhccccccCcEEEeeccCCC
Q 042413 275 YLKLNIPSLK-CLHSLLCTLLNLETLEMPSSYI-DQSPHDIWMMQKLMHLYFYCISPC 330 (350)
Q Consensus 275 ~L~l~~~~l~-~lP~~i~~l~~L~~L~l~~~~l-~~lP~~i~~L~~L~~L~l~~~~~~ 330 (350)
+|++++|.+. .+|..++++.+|++|++++|.+ ..+|..++++++|++|++++|...
T Consensus 192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 249 (968)
T PLN00113 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249 (968)
T ss_pred eeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence 7777776654 5666666677777777766633 356666666666666666666443
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.30 E-value=4.6e-14 Score=114.02 Aligned_cols=144 Identities=17% Similarity=0.223 Sum_probs=115.8
Q ss_pred CCCeeEEEEecCcc--chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCC
Q 042413 196 LANVKRCFILKDLI--DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLL 273 (350)
Q Consensus 196 ~~~~r~L~l~~~~~--~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L 273 (350)
.+.+.+|.+.++.. ..|...+.. +|+.|.++.+.+. .+|..++.++.||.|+++-|.+..+|..+|.++-|
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~--nlevln~~nnqie-----~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELK--NLEVLNLSNNQIE-----ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhh--hhhhhhcccchhh-----hcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence 46678888888887 233344566 8888888888763 35577888999999999988888899999999999
Q ss_pred CeeeeeCCCCc--ccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCcccccccccccccC
Q 042413 274 KYLKLNIPSLK--CLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISALH 349 (350)
Q Consensus 274 ~~L~l~~~~l~--~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~ 349 (350)
..|+|..|++. .+|..+..+.-|+.|.+++|.+.-+|.++++|++|+.|.+.+|.... +|..++.|+.|+.||
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~---lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS---LPKEIGDLTRLRELH 179 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh---CcHHHHHHHHHHHHh
Confidence 99999998875 78888888888888889999899999999999999999998775443 677777777777765
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.22 E-value=1.6e-11 Score=129.76 Aligned_cols=106 Identities=25% Similarity=0.220 Sum_probs=54.3
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC-cCccccCCCCCCCeeeeeCCCCc-ccchhhhcCcCCCE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD-QYPSGLENLYLLKYLKLNIPSLK-CLHSLLCTLLNLET 298 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~l~-~lP~~i~~l~~L~~ 298 (350)
+|++|.+.++.. ....+..+.++++|+.|+|++|.+. .+|..++++++|++|++++|.+. .+|..++++++|++
T Consensus 189 ~L~~L~L~~n~l----~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 264 (968)
T PLN00113 189 SLEFLTLASNQL----VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY 264 (968)
T ss_pred CCCeeeccCCCC----cCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCE
Confidence 444444444433 2233344555555555555555544 45555555555555555555543 45555555555555
Q ss_pred EEccCCcC-cccchhccccccCcEEEeeccCCC
Q 042413 299 LEMPSSYI-DQSPHDIWMMQKLMHLYFYCISPC 330 (350)
Q Consensus 299 L~l~~~~l-~~lP~~i~~L~~L~~L~l~~~~~~ 330 (350)
|++++|.+ ..+|..++++++|++|++++|...
T Consensus 265 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred EECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 55555532 345555555555555555555443
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.17 E-value=1e-12 Score=125.01 Aligned_cols=125 Identities=21% Similarity=0.232 Sum_probs=102.6
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLE 300 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~ 300 (350)
.|.+|.+.+... +...+|..+..+.+|+.+|||.|++..+|+.+-++.+|+.|+||+|.|+++.-.++.-.+|++|+
T Consensus 198 sL~vLhms~TqR---Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLN 274 (1255)
T KOG0444|consen 198 SLSVLHMSNTQR---TLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLN 274 (1255)
T ss_pred hhhhhhcccccc---hhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhc
Confidence 334444444333 34456677888999999999999999999999999999999999999999988888889999999
Q ss_pred ccCCcCcccchhccccccCcEEEeeccCCCCCCCCcccccccccccccC
Q 042413 301 MPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISALH 349 (350)
Q Consensus 301 l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~ 349 (350)
++.|.+..+|+.+++|++|+.|.+.+|... ...+|+++++|..|+++|
T Consensus 275 lSrNQLt~LP~avcKL~kL~kLy~n~NkL~-FeGiPSGIGKL~~Levf~ 322 (1255)
T KOG0444|consen 275 LSRNQLTVLPDAVCKLTKLTKLYANNNKLT-FEGIPSGIGKLIQLEVFH 322 (1255)
T ss_pred cccchhccchHHHhhhHHHHHHHhccCccc-ccCCccchhhhhhhHHHH
Confidence 999999999999999999999999887543 234788888888887765
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.03 E-value=1.4e-11 Score=111.80 Aligned_cols=94 Identities=22% Similarity=0.256 Sum_probs=72.0
Q ss_pred ccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchh------------------------hhc
Q 042413 237 SKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSL------------------------LCT 292 (350)
Q Consensus 237 ~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~------------------------i~~ 292 (350)
.+.++..++.+++|..|+|++|.+..+|...+.+..||.|+++.|++..+|+. +++
T Consensus 424 isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 424 ISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKN 503 (565)
T ss_pred cccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence 44566778888889999999998889998899888899999998887777764 445
Q ss_pred CcCCCEEEccCCcCcccchhccccccCcEEEeeccCCC
Q 042413 293 LLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPC 330 (350)
Q Consensus 293 l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~ 330 (350)
+.+|.+||+.+|.+..+|+.+|++++|+||++++|.+.
T Consensus 504 m~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 504 MRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 66677777777777777777777777777777766543
No 11
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.98 E-value=3.7e-10 Score=94.15 Aligned_cols=105 Identities=21% Similarity=0.229 Sum_probs=33.2
Q ss_pred CeeEEEEecCCCCCCCccchHHHhc-CCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhh-hcCcCCCE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFK-RFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLL-CTLLNLET 298 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i-~~l~~L~~ 298 (350)
++|.|.+.++.+.. + +.+. .+.+|++|+|++|.++.++ .+..+++|+.|++++|.|+.+++.+ ..+++|++
T Consensus 20 ~~~~L~L~~n~I~~-----I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 20 KLRELNLRGNQIST-----I-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccc-----c-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 55666666666521 1 1222 3556677777777766654 4566677777777777777665544 34677777
Q ss_pred EEccCCcCcccch--hccccccCcEEEeeccCCCCC
Q 042413 299 LEMPSSYIDQSPH--DIWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 299 L~l~~~~l~~lP~--~i~~L~~L~~L~l~~~~~~~~ 332 (350)
|++++|.+.++-+ .+..+++|+.|++.+|..+..
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 7777775544432 455666677777776655544
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.90 E-value=5.4e-09 Score=112.03 Aligned_cols=125 Identities=23% Similarity=0.172 Sum_probs=100.1
Q ss_pred CCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCC-CCcCccccCCCCCC
Q 042413 196 LANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAV-LDQYPSGLENLYLL 273 (350)
Q Consensus 196 ~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~lp~~i~~l~~L 273 (350)
+.++|.|.+..+.. .+|...... +|+.|.+.++... ..+..+..+++|+.|+|+++. +..+| .++.+++|
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f~~~--~L~~L~L~~s~l~-----~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~L 659 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNFRPE--NLVKLQMQGSKLE-----KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNL 659 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcCCcc--CCcEEECcCcccc-----ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcc
Confidence 46688888877665 556555556 9999998887653 233456788999999999876 67777 48889999
Q ss_pred CeeeeeCCC-CcccchhhhcCcCCCEEEccCC-cCcccchhccccccCcEEEeeccCC
Q 042413 274 KYLKLNIPS-LKCLHSLLCTLLNLETLEMPSS-YIDQSPHDIWMMQKLMHLYFYCISP 329 (350)
Q Consensus 274 ~~L~l~~~~-l~~lP~~i~~l~~L~~L~l~~~-~l~~lP~~i~~L~~L~~L~l~~~~~ 329 (350)
++|++++|. +..+|.+++++.+|+.|++++| .++.+|..+ ++++|+.|++++|..
T Consensus 660 e~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~ 716 (1153)
T PLN03210 660 ETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSR 716 (1153)
T ss_pred cEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCC
Confidence 999999875 6799999999999999999998 899999876 788999999988754
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.88 E-value=5.3e-10 Score=101.73 Aligned_cols=85 Identities=24% Similarity=0.268 Sum_probs=67.7
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcc-----------------------c-cCCCCCCCee
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPS-----------------------G-LENLYLLKYL 276 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-----------------------~-i~~l~~L~~L 276 (350)
++..|.+..+..+ .+|..+..+..||.||++.|.|..+|+ + +++|.+|..|
T Consensus 436 kLt~L~L~NN~Ln-----~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tL 510 (565)
T KOG0472|consen 436 KLTFLDLSNNLLN-----DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTL 510 (565)
T ss_pred cceeeecccchhh-----hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhccee
Confidence 6666666665543 455667777778888888876654443 2 7788999999
Q ss_pred eeeCCCCcccchhhhcCcCCCEEEccCCcCcccch
Q 042413 277 KLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPH 311 (350)
Q Consensus 277 ~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~ 311 (350)
+|.+|.+..+|+.+|++.+|++|++.+|.+. .|.
T Consensus 511 DL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr-~Pr 544 (565)
T KOG0472|consen 511 DLQNNDLQQIPPILGNMTNLRHLELDGNPFR-QPR 544 (565)
T ss_pred ccCCCchhhCChhhccccceeEEEecCCccC-CCH
Confidence 9999999999999999999999999999887 554
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.82 E-value=2.4e-09 Score=89.31 Aligned_cols=126 Identities=17% Similarity=0.146 Sum_probs=56.2
Q ss_pred CCCeeEEEEecCccchhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccC-CCCCCC
Q 042413 196 LANVKRCFILKDLIDFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLE-NLYLLK 274 (350)
Q Consensus 196 ~~~~r~L~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~-~l~~L~ 274 (350)
+.+.|.|.+.++.+...+.....+.+|+.|.+..|.... + +.+..++.|+.|++++|.++.+++.+. .+++|+
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~----l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK----L--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred ccccccccccccccccccchhhhhcCCCEEECCCCCCcc----c--cCccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 346789999999984444443223399999999998842 2 356779999999999999998876553 689999
Q ss_pred eeeeeCCCCcccc--hhhhcCcCCCEEEccCCcCcccch----hccccccCcEEEeecc
Q 042413 275 YLKLNIPSLKCLH--SLLCTLLNLETLEMPSSYIDQSPH----DIWMMQKLMHLYFYCI 327 (350)
Q Consensus 275 ~L~l~~~~l~~lP--~~i~~l~~L~~L~l~~~~l~~lP~----~i~~L~~L~~L~l~~~ 327 (350)
.|++++|+|..+- ..+..+++|++|++.+|.+..-+. -+..+++|+.||....
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 9999999987553 456789999999999998877765 6788999999988653
No 15
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.81 E-value=4.5e-09 Score=99.88 Aligned_cols=145 Identities=17% Similarity=0.117 Sum_probs=103.0
Q ss_pred CCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCCCCC
Q 042413 197 ANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLK 274 (350)
Q Consensus 197 ~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~ 274 (350)
.+++.+++..+.. .+|...... .++..|.+..|.+ ..+-...+..++.||+||||.|.|.++| .++..=.+++
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~~s-ghl~~L~L~~N~I----~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~ 176 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGHES-GHLEKLDLRHNLI----SSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIK 176 (873)
T ss_pred Ccceeeeeccchhhhcccccccc-cceeEEeeecccc----ccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCce
Confidence 3455555555554 444433222 2688888887776 4556677888899999999999998887 4556667899
Q ss_pred eeeeeCCCCcccc-hhhhcCcCCCEEEccCCcCcccch-hccccccCcEEEeeccCCCCCC-CCccccccccccc
Q 042413 275 YLKLNIPSLKCLH-SLLCTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFYCISPCTSK-NYSSSLKNLIFIS 346 (350)
Q Consensus 275 ~L~l~~~~l~~lP-~~i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~ 346 (350)
+|+|++|.|+.+- ..+..|.+|.+|.|+.|.+..+|. .|.+|++|+.|++..|.+.... --+.+|..|++|+
T Consensus 177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk 251 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK 251 (873)
T ss_pred EEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh
Confidence 9999999998763 456788899999999999999987 5666999999999877543321 1344455555443
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.76 E-value=1.2e-09 Score=108.50 Aligned_cols=125 Identities=17% Similarity=0.195 Sum_probs=97.2
Q ss_pred CCeeEEEEecCcc---chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCC
Q 042413 197 ANVKRCFILKDLI---DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLL 273 (350)
Q Consensus 197 ~~~r~L~l~~~~~---~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L 273 (350)
..+.-|.+.+|.. -+|....+. +||.|.+..|.. ..++...+.++..|+.|+||||.++.+|..+..+..|
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~--hLKVLhLsyNrL----~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L 432 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFK--HLKVLHLSYNRL----NSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRL 432 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhcccc--ceeeeeeccccc----ccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhh
Confidence 4445555555554 355566777 999999988876 4567778888999999999999999999989999999
Q ss_pred CeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcc--cchhccccccCcEEEeeccCC
Q 042413 274 KYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQ--SPHDIWMMQKLMHLYFYCISP 329 (350)
Q Consensus 274 ~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~--lP~~i~~L~~L~~L~l~~~~~ 329 (350)
++|...+|.+..+| .+..++.|+++|++.|.+.. +|...-. ++|++||+++|..
T Consensus 433 ~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 433 HTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred HHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 99999889899898 68889999999999885544 4443332 7899999988853
No 17
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.74 E-value=7.9e-09 Score=106.35 Aligned_cols=129 Identities=22% Similarity=0.170 Sum_probs=96.2
Q ss_pred chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCC--CCcCcc-ccCCCCCCCeeeeeCCC-Ccc
Q 042413 210 DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAV--LDQYPS-GLENLYLLKYLKLNIPS-LKC 285 (350)
Q Consensus 210 ~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~--l~~lp~-~i~~l~~L~~L~l~~~~-l~~ 285 (350)
+.+...... ..|...+.++.... . ..-...+.|+.|-+.+|. +..++. .+..++.|++|||++|. +.+
T Consensus 515 ~~~~~~~~~--~~rr~s~~~~~~~~-----~-~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~ 586 (889)
T KOG4658|consen 515 EIPQVKSWN--SVRRMSLMNNKIEH-----I-AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK 586 (889)
T ss_pred ccccccchh--heeEEEEeccchhh-----c-cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc
Confidence 445555555 88888888877632 1 112234468888888886 666664 47789999999999875 789
Q ss_pred cchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCccccccccccccc
Q 042413 286 LHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISAL 348 (350)
Q Consensus 286 lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L 348 (350)
||++|+.|-+|++|+++++.+..+|.++++|++|.+|++..+...... +..+..|++|++|
T Consensus 587 LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 587 LPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI--PGILLELQSLRVL 647 (889)
T ss_pred CChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc--cchhhhcccccEE
Confidence 999999999999999999999999999999999999999877544442 2223335555443
No 18
>PLN03150 hypothetical protein; Provisional
Probab=98.73 E-value=2.8e-08 Score=99.79 Aligned_cols=103 Identities=16% Similarity=0.173 Sum_probs=69.3
Q ss_pred eeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC-cCccccCCCCCCCeeeeeCCCCc-ccchhhhcCcCCCEE
Q 042413 222 LQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD-QYPSGLENLYLLKYLKLNIPSLK-CLHSLLCTLLNLETL 299 (350)
Q Consensus 222 Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~l~-~lP~~i~~l~~L~~L 299 (350)
++.|.+.++.. ...++..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|+.+++|++|++|
T Consensus 420 v~~L~L~~n~L----~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQGL----RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEECCCCCc----cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 55555555554 3445566777777777777777776 67777777777777777777776 677777777777777
Q ss_pred EccCC-cCcccchhcccc-ccCcEEEeeccC
Q 042413 300 EMPSS-YIDQSPHDIWMM-QKLMHLYFYCIS 328 (350)
Q Consensus 300 ~l~~~-~l~~lP~~i~~L-~~L~~L~l~~~~ 328 (350)
+|++| ..+.+|..++.+ .++..+++.+|.
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEecCCc
Confidence 77777 344677766653 355666666653
No 19
>PLN03150 hypothetical protein; Provisional
Probab=98.69 E-value=2.8e-08 Score=99.80 Aligned_cols=84 Identities=19% Similarity=0.249 Sum_probs=77.0
Q ss_pred eeeEEEccCCCCC-cCccccCCCCCCCeeeeeCCCCc-ccchhhhcCcCCCEEEccCCcC-cccchhccccccCcEEEee
Q 042413 249 YLRVLNLGSAVLD-QYPSGLENLYLLKYLKLNIPSLK-CLHSLLCTLLNLETLEMPSSYI-DQSPHDIWMMQKLMHLYFY 325 (350)
Q Consensus 249 ~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~l~-~lP~~i~~l~~L~~L~l~~~~l-~~lP~~i~~L~~L~~L~l~ 325 (350)
.++.|+|++|.+. .+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|+|++|.+ +.+|+.++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4889999999988 88999999999999999999997 8999999999999999999955 5899999999999999999
Q ss_pred ccCCCCC
Q 042413 326 CISPCTS 332 (350)
Q Consensus 326 ~~~~~~~ 332 (350)
+|...+.
T Consensus 499 ~N~l~g~ 505 (623)
T PLN03150 499 GNSLSGR 505 (623)
T ss_pred CCccccc
Confidence 9876654
No 20
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.68 E-value=3.2e-09 Score=93.36 Aligned_cols=128 Identities=20% Similarity=0.159 Sum_probs=97.6
Q ss_pred CCeeEEEEecCcc-chhhcc-CCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCC
Q 042413 197 ANVKRCFILKDLI-DFFSSL-KHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLK 274 (350)
Q Consensus 197 ~~~r~L~l~~~~~-~~~~~~-~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~ 274 (350)
..+..+.+.+|.+ .+-.+. -.+ .+|.|+++.|.+. .+ ..+..+++|..||||+|.++++-..-.+|-+.+
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~P--kir~L~lS~N~i~----~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAP--KLRRLILSQNRIR----TV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIK 355 (490)
T ss_pred hhhhhccccccchhhhhhhhhhcc--ceeEEecccccee----ee--hhhhhcccceEeecccchhHhhhhhHhhhcCEe
Confidence 3445556666665 233333 234 8999999888862 12 347788899999999998887766556777889
Q ss_pred eeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccch--hccccccCcEEEeeccCCCCCC
Q 042413 275 YLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPH--DIWMMQKLMHLYFYCISPCTSK 333 (350)
Q Consensus 275 ~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~--~i~~L~~L~~L~l~~~~~~~~~ 333 (350)
.|.|++|.|+.+ +.+++|++|..||+++|++.++.. +||+|+.|+++.+.+|.....+
T Consensus 356 tL~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 356 TLKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred eeehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 999999988888 568999999999999998888765 8999999999999988765543
No 21
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.66 E-value=1.1e-08 Score=97.33 Aligned_cols=128 Identities=16% Similarity=0.134 Sum_probs=85.7
Q ss_pred CCeeEEEEecCcc-chh--hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCCCC
Q 042413 197 ANVKRCFILKDLI-DFF--SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENLYL 272 (350)
Q Consensus 197 ~~~r~L~l~~~~~-~~~--~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~ 272 (350)
.++.+|.+..+.+ .+. ....+. +|-+|.+..|.. ...++..|++++.|+.|+|..|.|..+ --.+.+|.+
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~ln--sL~tlkLsrNri----ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~S 246 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLN--SLLTLKLSRNRI----TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPS 246 (873)
T ss_pred CCceEEeeccccccccccccccccc--hheeeecccCcc----cccCHHHhhhcchhhhhhccccceeeehhhhhcCchh
Confidence 5688889888887 222 223444 788888888886 567778888899999999988887744 345666777
Q ss_pred CCeeeeeCCCCcccchh-hhcCcCCCEEEccCCcCcccch-hccccccCcEEEeeccCCC
Q 042413 273 LKYLKLNIPSLKCLHSL-LCTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFYCISPC 330 (350)
Q Consensus 273 L~~L~l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~ 330 (350)
|+.|.|..|+|..|-.. +..|.++++|+|..|++..+-+ ++..|++|++|+++.|.+.
T Consensus 247 l~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ 306 (873)
T KOG4194|consen 247 LQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ 306 (873)
T ss_pred hhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh
Confidence 77777777777666543 2455666666666665555543 4555666666666655443
No 22
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.63 E-value=2.8e-08 Score=68.12 Aligned_cols=56 Identities=27% Similarity=0.395 Sum_probs=27.7
Q ss_pred eeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCcccch-hhhcCcCCCEEEccCC
Q 042413 249 YLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLETLEMPSS 304 (350)
Q Consensus 249 ~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~~ 304 (350)
+|++|++++|.++.+| ..+..+++|++|++++|.++.+|+ .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3455555555555444 234445555555555555554433 3345555555555544
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.60 E-value=6.8e-08 Score=98.06 Aligned_cols=116 Identities=15% Similarity=0.173 Sum_probs=66.6
Q ss_pred CCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCC
Q 042413 196 LANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLK 274 (350)
Q Consensus 196 ~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~ 274 (350)
+..++.|.+.++.+ .++... .. +|++|.+.+|... .++ ..+ .+.|+.|+|++|.+..+|..+. .+|+
T Consensus 198 p~~L~~L~Ls~N~LtsLP~~l-~~--nL~~L~Ls~N~Lt----sLP-~~l--~~~L~~L~Ls~N~L~~LP~~l~--s~L~ 265 (754)
T PRK15370 198 PEQITTLILDNNELKSLPENL-QG--NIKTLYANSNQLT----SIP-ATL--PDTIQEMELSINRITELPERLP--SALQ 265 (754)
T ss_pred ccCCcEEEecCCCCCcCChhh-cc--CCCEEECCCCccc----cCC-hhh--hccccEEECcCCccCcCChhHh--CCCC
Confidence 45677777777766 333322 24 7777777766552 222 222 1356677777777766666554 3567
Q ss_pred eeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeecc
Q 042413 275 YLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCI 327 (350)
Q Consensus 275 ~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~ 327 (350)
+|++++|++..+|..+. .+|+.|++++|.+..+|..+. ++|++|++++|
T Consensus 266 ~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N 314 (754)
T PRK15370 266 SLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN 314 (754)
T ss_pred EEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCC
Confidence 77777777766666553 367777777776666665432 23444444443
No 24
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.57 E-value=4.3e-08 Score=67.17 Aligned_cols=58 Identities=22% Similarity=0.212 Sum_probs=52.4
Q ss_pred CCCCeeeeeCCCCcccch-hhhcCcCCCEEEccCCcCcccch-hccccccCcEEEeeccC
Q 042413 271 YLLKYLKLNIPSLKCLHS-LLCTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFYCIS 328 (350)
Q Consensus 271 ~~L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~ 328 (350)
++|++|++++|+++.+|+ .+..+++|++|++++|.+..+|+ .|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 479999999999999985 56889999999999999999976 78999999999998874
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.56 E-value=4.9e-08 Score=98.78 Aligned_cols=79 Identities=16% Similarity=0.081 Sum_probs=64.7
Q ss_pred ceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeecc
Q 042413 248 KYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCI 327 (350)
Q Consensus 248 ~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~ 327 (350)
..|+.|++++|.++.+|... .+|+.|++++|.++.+|... .+|+.|++++|.+..+|.+++++++|+.|++++|
T Consensus 382 ~~L~~LdLs~N~Lt~LP~l~---s~L~~LdLS~N~LssIP~l~---~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 382 SGLKELIVSGNRLTSLPVLP---SELKELMVSGNRLTSLPMLP---SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred cccceEEecCCcccCCCCcc---cCCCEEEccCCcCCCCCcch---hhhhhhhhccCcccccChHHhhccCCCeEECCCC
Confidence 46788888888888777543 56888899999888888643 4678899999999999999999999999999999
Q ss_pred CCCCC
Q 042413 328 SPCTS 332 (350)
Q Consensus 328 ~~~~~ 332 (350)
...+.
T Consensus 456 ~Ls~~ 460 (788)
T PRK15387 456 PLSER 460 (788)
T ss_pred CCCch
Confidence 77654
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.54 E-value=2.5e-07 Score=94.01 Aligned_cols=120 Identities=18% Similarity=0.136 Sum_probs=92.9
Q ss_pred CCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCe
Q 042413 197 ANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKY 275 (350)
Q Consensus 197 ~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~ 275 (350)
.+...+.+..... .+|... .+ +++.|.+.+|.+ ..++...+ ++|+.|++++|.++.+|..+. .+|+.
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~--~L~~L~Ls~N~L----tsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~ 245 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PE--QITTLILDNNEL----KSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQE 245 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-cc--CCcEEEecCCCC----CcCChhhc---cCCCEEECCCCccccCChhhh--ccccE
Confidence 3455677766555 444332 24 899999999876 33433332 589999999999999998765 47999
Q ss_pred eeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCC
Q 042413 276 LKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 276 L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~ 332 (350)
|+|++|.+..+|..+. .+|+.|++++|.+..+|..+. .+|++|++++|.....
T Consensus 246 L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~L 298 (754)
T PRK15370 246 MELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTL 298 (754)
T ss_pred EECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccC
Confidence 9999999999998875 589999999999999998775 4899999999876654
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.46 E-value=1.4e-08 Score=96.22 Aligned_cols=125 Identities=19% Similarity=0.182 Sum_probs=101.0
Q ss_pred eeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeee
Q 042413 199 VKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLK 277 (350)
Q Consensus 199 ~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~ 277 (350)
+..+.+..+.. ..|.....- -|+.|++..+... ..+..++....|..||.+.|.+..+|..++.|..|+.|+
T Consensus 123 lt~l~ls~NqlS~lp~~lC~l--pLkvli~sNNkl~-----~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 123 LTFLDLSSNQLSHLPDGLCDL--PLKVLIVSNNKLT-----SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLN 195 (722)
T ss_pred HHHhhhccchhhcCChhhhcC--cceeEEEecCccc-----cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHH
Confidence 44445555555 344444444 6888988888763 355666788899999999999999999999999999999
Q ss_pred eeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCC
Q 042413 278 LNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCT 331 (350)
Q Consensus 278 l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~ 331 (350)
++.|.+..+|+.++.| .|..||++.|++..+|-.|.+|+.|++|.|.+|....
T Consensus 196 vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 196 VRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred HhhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence 9999999999999855 5899999999999999999999999999999885543
No 28
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.46 E-value=2.8e-08 Score=99.09 Aligned_cols=90 Identities=19% Similarity=0.249 Sum_probs=57.3
Q ss_pred HhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEE
Q 042413 243 FFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHL 322 (350)
Q Consensus 243 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L 322 (350)
+..+.-+|++||+++|.+..+|..|..+.+|+.|+++.|.|.+.|.+++++.+|++|+|.+|.+..+|.++..+++|+.|
T Consensus 40 ~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~L 119 (1081)
T KOG0618|consen 40 FVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYL 119 (1081)
T ss_pred HhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhccccc
Confidence 33333346666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred EeeccCCCCC
Q 042413 323 YFYCISPCTS 332 (350)
Q Consensus 323 ~l~~~~~~~~ 332 (350)
+++.|.....
T Consensus 120 dlS~N~f~~~ 129 (1081)
T KOG0618|consen 120 DLSFNHFGPI 129 (1081)
T ss_pred ccchhccCCC
Confidence 6666654443
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.42 E-value=6.1e-07 Score=90.98 Aligned_cols=59 Identities=20% Similarity=0.133 Sum_probs=29.1
Q ss_pred eeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhc-----------------CcCCCEEEccCCcCcccch
Q 042413 250 LRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCT-----------------LLNLETLEMPSSYIDQSPH 311 (350)
Q Consensus 250 L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~-----------------l~~L~~L~l~~~~l~~lP~ 311 (350)
|+.|++++|.++.+|.. +++|++|++++|.++.+|..... ..+|++|++++|++..+|.
T Consensus 284 L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 284 LCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPT 359 (788)
T ss_pred cCEEECcCCcccccccc---ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCC
Confidence 44445555555444432 24455555555555544431111 1256666666666666654
No 30
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.41 E-value=3.3e-07 Score=58.06 Aligned_cols=39 Identities=31% Similarity=0.314 Sum_probs=22.3
Q ss_pred CCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccc
Q 042413 272 LLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSP 310 (350)
Q Consensus 272 ~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP 310 (350)
+|++|++++|+|+.+|+.+++|++|++|++++|.+.++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 456666666666666655666666666666666555543
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.40 E-value=4.8e-08 Score=86.09 Aligned_cols=119 Identities=18% Similarity=0.101 Sum_probs=75.0
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLE 300 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~ 300 (350)
.|..+.+++|.+. .+..+..-.+.+|+|++|.|++..+-. +..|.+|+.|+|++|.+.++-.+=-+|-|.++|.
T Consensus 285 ~LtelDLS~N~I~-----~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-----QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhccccccchh-----hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 4445555555442 334455556777777777777665433 6667777777777777666654445667777777
Q ss_pred ccCCcCcccchhccccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413 301 MPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA 347 (350)
Q Consensus 301 l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~ 347 (350)
|++|.+..+ +++++|-+|..||+++|.+.... -..++++|..|++
T Consensus 359 La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ld-eV~~IG~LPCLE~ 403 (490)
T KOG1259|consen 359 LAQNKIETL-SGLRKLYSLVNLDLSSNQIEELD-EVNHIGNLPCLET 403 (490)
T ss_pred hhhhhHhhh-hhhHhhhhheeccccccchhhHH-HhcccccccHHHH
Confidence 777766666 46788888899999888655432 2233444444443
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.37 E-value=5.1e-08 Score=92.55 Aligned_cols=122 Identities=16% Similarity=0.148 Sum_probs=77.7
Q ss_pred eeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeee
Q 042413 199 VKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLK 277 (350)
Q Consensus 199 ~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~ 277 (350)
++.+.+.+++. ..|..+. -+..|.-|.+..|... ..+.-+.++..||.|++..|.+..+|+.++.|+ |..||
T Consensus 145 Lkvli~sNNkl~~lp~~ig-~~~tl~~ld~s~nei~-----slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lD 217 (722)
T KOG0532|consen 145 LKVLIVSNNKLTSLPEEIG-LLPTLAHLDVSKNEIQ-----SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLD 217 (722)
T ss_pred ceeEEEecCccccCCcccc-cchhHHHhhhhhhhhh-----hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeee
Confidence 45555566655 3444333 2226666666666542 344566777777777777777777777777554 77777
Q ss_pred eeCCCCcccchhhhcCcCCCEEEccCCcCcccchhcccccc---CcEEEeecc
Q 042413 278 LNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQK---LMHLYFYCI 327 (350)
Q Consensus 278 l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~---L~~L~l~~~ 327 (350)
++.|++..||-.+.+|++||+|-|.+|.+++-|..|+...+ .++|+..-|
T Consensus 218 fScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 218 FSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 77777777777777777777777777777777765543333 344444433
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.34 E-value=5.1e-07 Score=83.08 Aligned_cols=109 Identities=19% Similarity=0.246 Sum_probs=58.6
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC-----cCccccCCCCCCCeeeeeCCCCc-----ccchhh
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD-----QYPSGLENLYLLKYLKLNIPSLK-----CLHSLL 290 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~l~-----~lP~~i 290 (350)
+|+.|.+.++.............+..++.|+.|++++|.+. .++..+..+.+|++|++++|.+. .++..+
T Consensus 138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~ 217 (319)
T cd00116 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL 217 (319)
T ss_pred CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh
Confidence 66666666666521001122334555566777777776655 23334444556777777766654 233445
Q ss_pred hcCcCCCEEEccCCcCccc-chhcc-----ccccCcEEEeeccCC
Q 042413 291 CTLLNLETLEMPSSYIDQS-PHDIW-----MMQKLMHLYFYCISP 329 (350)
Q Consensus 291 ~~l~~L~~L~l~~~~l~~l-P~~i~-----~L~~L~~L~l~~~~~ 329 (350)
..+++|++|++++|.+... +..+. ..++|++|++++|..
T Consensus 218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 5566677777777654431 11111 135677777766644
No 34
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.32 E-value=4.6e-07 Score=57.39 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=35.8
Q ss_pred ceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccch
Q 042413 248 KYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHS 288 (350)
Q Consensus 248 ~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~ 288 (350)
++|++|++++|.++.+|..+++|++|++|++++|.++.+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 46899999999999999889999999999999999998764
No 35
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.31 E-value=9.5e-08 Score=87.08 Aligned_cols=123 Identities=20% Similarity=0.144 Sum_probs=97.0
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCCCCCCeeeeeC-CCCcccchh-hhcCcCCC
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENLYLLKYLKLNI-PSLKCLHSL-LCTLLNLE 297 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~-~~l~~lP~~-i~~l~~L~ 297 (350)
....+.+..|.+ ..+++..|+.++.||.||||.|.|+.+ |+.+..|.+|..|-+.+ |+|+.+|.. ++.|..||
T Consensus 68 ~tveirLdqN~I----~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 68 ETVEIRLDQNQI----SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred cceEEEeccCCc----ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 566677778876 678889999999999999999999954 78899999998888777 889999975 48899999
Q ss_pred EEEccCCcCcccch-hccccccCcEEEeeccCCCCCCCCcccccccccccccC
Q 042413 298 TLEMPSSYIDQSPH-DIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISALH 349 (350)
Q Consensus 298 ~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~ 349 (350)
.|.+.-|.+.-++. .+..|++|..|.+.+|...... -..+..+..++++|
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~--~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSIC--KGTFQGLAAIKTLH 194 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhc--cccccchhccchHh
Confidence 99998887776654 7888999999999887554442 12455555555554
No 36
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.31 E-value=3.4e-07 Score=84.32 Aligned_cols=132 Identities=18% Similarity=0.103 Sum_probs=95.7
Q ss_pred CCeeEEEEecCccc--hh----hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCC-ceeeEEEccCCCCC-----cCc
Q 042413 197 ANVKRCFILKDLID--FF----SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRF-KYLRVLNLGSAVLD-----QYP 264 (350)
Q Consensus 197 ~~~r~L~l~~~~~~--~~----~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~~~l~-----~lp 264 (350)
.+++++.+.++... .+ .....+ +|+.|.+.++.............+..+ ++|+.|++++|.++ .++
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~--~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSS--SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccC--cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 47888988877652 11 111113 699999998876311112333456677 89999999999987 445
Q ss_pred cccCCCCCCCeeeeeCCCCc-----ccchhhhcCcCCCEEEccCCcCc-----ccchhccccccCcEEEeeccCCC
Q 042413 265 SGLENLYLLKYLKLNIPSLK-----CLHSLLCTLLNLETLEMPSSYID-----QSPHDIWMMQKLMHLYFYCISPC 330 (350)
Q Consensus 265 ~~i~~l~~L~~L~l~~~~l~-----~lP~~i~~l~~L~~L~l~~~~l~-----~lP~~i~~L~~L~~L~l~~~~~~ 330 (350)
..+..+.+|++|++++|.+. .++..+..+++|+.|++++|.+. .++..+..+++|++|++++|...
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 56777889999999999886 35556667789999999999664 34556778899999999998654
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.21 E-value=6.1e-07 Score=85.41 Aligned_cols=79 Identities=32% Similarity=0.413 Sum_probs=42.8
Q ss_pred eeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeecc
Q 042413 249 YLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCI 327 (350)
Q Consensus 249 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~ 327 (350)
+|+.|++++|.+..+|..++.+++|+.|++++|++..+|...+.+.+|+.|++++|.+..+|..+..+..|..|.+++|
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCC
Confidence 5555555555555555555555555555555555555555544555555555555555555554444444555555544
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.20 E-value=7.3e-07 Score=84.88 Aligned_cols=86 Identities=26% Similarity=0.288 Sum_probs=41.8
Q ss_pred CCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEee
Q 042413 246 RFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFY 325 (350)
Q Consensus 246 ~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~ 325 (350)
..+.|+.|++++|.+..+|..+..+.+|..|.+++|.+...|..+.++.++..|.+.+|.+..+|..++.+++++.|+++
T Consensus 184 ~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 184 NLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLS 263 (394)
T ss_pred hhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccc
Confidence 34444444444444444444443444444444444443344444444445555554444444445555666666666666
Q ss_pred ccCCCC
Q 042413 326 CISPCT 331 (350)
Q Consensus 326 ~~~~~~ 331 (350)
+|....
T Consensus 264 ~n~i~~ 269 (394)
T COG4886 264 NNQISS 269 (394)
T ss_pred cccccc
Confidence 554433
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=7e-07 Score=82.47 Aligned_cols=129 Identities=20% Similarity=0.113 Sum_probs=79.0
Q ss_pred CeeEEEEecCccchhhcc--CCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCC-CCcCccccCCCCCCC
Q 042413 198 NVKRCFILKDLIDFFSSL--KHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAV-LDQYPSGLENLYLLK 274 (350)
Q Consensus 198 ~~r~L~l~~~~~~~~~~~--~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~lp~~i~~l~~L~ 274 (350)
.++.|.+..|....+... ...+++++.|.+.+|.. ++.........++.|.+|+|.+|. +..--.+..-+..|+
T Consensus 173 ~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGl---s~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 173 SLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGL---SWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ 249 (505)
T ss_pred cchhcccccccccCCccccchhhhhhhheEEeccCCC---CHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence 445555555554222211 11123778888887777 366666677778888888888874 221112223355677
Q ss_pred eeeeeCCCCcccc--hhhhcCcCCCEEEccCCcCccc--chh-----ccccccCcEEEeeccCC
Q 042413 275 YLKLNIPSLKCLH--SLLCTLLNLETLEMPSSYIDQS--PHD-----IWMMQKLMHLYFYCISP 329 (350)
Q Consensus 275 ~L~l~~~~l~~lP--~~i~~l~~L~~L~l~~~~l~~l--P~~-----i~~L~~L~~L~l~~~~~ 329 (350)
.|+|++|.+..+| .-++.++.|..|+++.|.+.++ |+. ...+++|++|++..|.+
T Consensus 250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 8888887776555 4567778888888877755543 332 34566788888877765
No 40
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.12 E-value=2e-06 Score=86.64 Aligned_cols=130 Identities=15% Similarity=0.179 Sum_probs=96.9
Q ss_pred CCeeEEEEecCcc---chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCC
Q 042413 197 ANVKRCFILKDLI---DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLL 273 (350)
Q Consensus 197 ~~~r~L~l~~~~~---~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L 273 (350)
.++++|.+.+... ..+...+..+|.||+|.+.+-... .......+.++++|+.||+|+++++.+ ..++.|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~---~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD---NDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec---chhHHHHhhccCccceeecCCCCccCc-HHHhccccH
Confidence 5677888877554 333444434559999999987763 334557788999999999999999988 789999999
Q ss_pred CeeeeeCCCCcccc--hhhhcCcCCCEEEccCCcCcccch-------hccccccCcEEEeeccCCC
Q 042413 274 KYLKLNIPSLKCLH--SLLCTLLNLETLEMPSSYIDQSPH-------DIWMMQKLMHLYFYCISPC 330 (350)
Q Consensus 274 ~~L~l~~~~l~~lP--~~i~~l~~L~~L~l~~~~l~~lP~-------~i~~L~~L~~L~l~~~~~~ 330 (350)
+.|.+.+=.+..-+ ..+.+|++|++||+|......-|. .-..|++||.||.+++...
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 99999987666432 457899999999999873333332 1124889999999886543
No 41
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.05 E-value=1.1e-06 Score=69.00 Aligned_cols=88 Identities=20% Similarity=0.264 Sum_probs=58.8
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLE 300 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~ 300 (350)
+|.+..+.+|.. ...++.+...++.++.|+|++|.+..+|..+..++.||.|+++.|.+...|.-+..|.+|-.|+
T Consensus 54 el~~i~ls~N~f----k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 54 ELTKISLSDNGF----KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred eEEEEecccchh----hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 666666666665 4455555555666677777777777777666677777777777777777776666677777777
Q ss_pred ccCCcCcccchh
Q 042413 301 MPSSYIDQSPHD 312 (350)
Q Consensus 301 l~~~~l~~lP~~ 312 (350)
..+|...++|-+
T Consensus 130 s~~na~~eid~d 141 (177)
T KOG4579|consen 130 SPENARAEIDVD 141 (177)
T ss_pred CCCCccccCcHH
Confidence 666666666654
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=3.6e-06 Score=77.91 Aligned_cols=128 Identities=18% Similarity=0.097 Sum_probs=79.1
Q ss_pred CCeeEEEEecCccchhh----ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccc--cCCC
Q 042413 197 ANVKRCFILKDLIDFFS----SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSG--LENL 270 (350)
Q Consensus 197 ~~~r~L~l~~~~~~~~~----~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~--i~~l 270 (350)
+++|.+++.+.....+. ...++ ++|.|.++.+-+. .+.....+...+++|+.|+|+.|.+....++ -..+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~--~v~~LdLS~NL~~--nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILP--NVRDLDLSRNLFH--NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCC--cceeecchhhhHH--hHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 56777777777763222 34566 8888888887764 2555556777888888888888876633222 2256
Q ss_pred CCCCeeeeeCCCCc--ccchhhhc------------------------CcCCCEEEccCCcCcccc--hhccccccCcEE
Q 042413 271 YLLKYLKLNIPSLK--CLHSLLCT------------------------LLNLETLEMPSSYIDQSP--HDIWMMQKLMHL 322 (350)
Q Consensus 271 ~~L~~L~l~~~~l~--~lP~~i~~------------------------l~~L~~L~l~~~~l~~lP--~~i~~L~~L~~L 322 (350)
.+|+.|.|+.|+++ .+-...-. ++.|+.|||++|++..+| ..++.++.|..|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 78888888887765 22111122 334666666666555555 345566666666
Q ss_pred EeeccC
Q 042413 323 YFYCIS 328 (350)
Q Consensus 323 ~l~~~~ 328 (350)
.++.+.
T Consensus 277 nls~tg 282 (505)
T KOG3207|consen 277 NLSSTG 282 (505)
T ss_pred hccccC
Confidence 665553
No 43
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.87 E-value=1.2e-06 Score=80.04 Aligned_cols=95 Identities=16% Similarity=0.166 Sum_probs=75.1
Q ss_pred eeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCccc-chhhhcCcCCCEEEccC-CcCcccch-hccccccCcEEEe
Q 042413 249 YLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCL-HSLLCTLLNLETLEMPS-SYIDQSPH-DIWMMQKLMHLYF 324 (350)
Q Consensus 249 ~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~l-P~~i~~l~~L~~L~l~~-~~l~~lP~-~i~~L~~L~~L~l 324 (350)
.-..++|..|+|+.+| ..++.+++||.|+|++|.|+.+ |..+..|.+|-.|-+-+ |+|+++|. .|+.|.+|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 3467899999999998 5778899999999999999977 77888899987777766 69999998 6889999999998
Q ss_pred eccCCCCCC-CCcccccccc
Q 042413 325 YCISPCTSK-NYSSSLKNLI 343 (350)
Q Consensus 325 ~~~~~~~~~-~~~~~l~~L~ 343 (350)
.-|...-.. +.+..+++|.
T Consensus 148 Nan~i~Cir~~al~dL~~l~ 167 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLS 167 (498)
T ss_pred ChhhhcchhHHHHHHhhhcc
Confidence 776543332 2334444443
No 44
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.84 E-value=2.7e-06 Score=66.87 Aligned_cols=87 Identities=15% Similarity=0.103 Sum_probs=69.0
Q ss_pred HhcCCceeeEEEccCCCCCcCccccCCC-CCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcE
Q 042413 243 FFKRFKYLRVLNLGSAVLDQYPSGLENL-YLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMH 321 (350)
Q Consensus 243 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l-~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~ 321 (350)
.+.....|...+|++|.++++|+.+... +-++.|++++|.|+.+|.++..++.|+.|+++.|.+...|.-|..|.+|-.
T Consensus 48 ~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDM 127 (177)
T ss_pred HHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHH
Confidence 3455566777888888888888777653 478888888888888888888888888888888888888888888888888
Q ss_pred EEeeccCC
Q 042413 322 LYFYCISP 329 (350)
Q Consensus 322 L~l~~~~~ 329 (350)
|+..++..
T Consensus 128 Lds~~na~ 135 (177)
T KOG4579|consen 128 LDSPENAR 135 (177)
T ss_pred hcCCCCcc
Confidence 88876643
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.80 E-value=3.2e-05 Score=72.61 Aligned_cols=113 Identities=15% Similarity=0.108 Sum_probs=75.4
Q ss_pred CCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCC-CCCcCccccCCCCCCC
Q 042413 197 ANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSA-VLDQYPSGLENLYLLK 274 (350)
Q Consensus 197 ~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~lp~~i~~l~~L~ 274 (350)
...++|.+..+.. .+| ..+ ++|++|.+.++.. ....+..+ .++|+.|++++| .+..+|.+ |+
T Consensus 52 ~~l~~L~Is~c~L~sLP---~LP-~sLtsL~Lsnc~n----LtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le 115 (426)
T PRK15386 52 RASGRLYIKDCDIESLP---VLP-NELTEITIENCNN----LTTLPGSI--PEGLEKLTVCHCPEISGLPES------VR 115 (426)
T ss_pred cCCCEEEeCCCCCcccC---CCC-CCCcEEEccCCCC----cccCCchh--hhhhhheEccCcccccccccc------cc
Confidence 3467888887755 444 222 2799998877554 22333333 257899999998 57788865 55
Q ss_pred eeeeeCCC---CcccchhhhcCc------------------CCCEEEccCCcCcccchhccccccCcEEEeecc
Q 042413 275 YLKLNIPS---LKCLHSLLCTLL------------------NLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCI 327 (350)
Q Consensus 275 ~L~l~~~~---l~~lP~~i~~l~------------------~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~ 327 (350)
.|+++++. +..+|+++..|. +|++|++++|....+|..+. .+|++|+++.+
T Consensus 116 ~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 116 SLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred eEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 56666643 567888776653 68889998886555665544 47888888764
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.68 E-value=1.4e-06 Score=85.18 Aligned_cols=85 Identities=20% Similarity=0.179 Sum_probs=49.1
Q ss_pred HHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcE
Q 042413 242 NFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMH 321 (350)
Q Consensus 242 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~ 321 (350)
..+.-++.|+.|||+.|.++++- .+..|.+|+.|||+.|.+..+|.--..=.+|+.|++++|.++++ .++.+|.+|++
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL-~gie~LksL~~ 258 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTL-RGIENLKSLYG 258 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhh-hhHHhhhhhhc
Confidence 44455566666666666666553 55566666666666666665554111112366666666655555 34666666666
Q ss_pred EEeeccC
Q 042413 322 LYFYCIS 328 (350)
Q Consensus 322 L~l~~~~ 328 (350)
||++.|-
T Consensus 259 LDlsyNl 265 (1096)
T KOG1859|consen 259 LDLSYNL 265 (1096)
T ss_pred cchhHhh
Confidence 6666653
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.62 E-value=3.3e-06 Score=82.69 Aligned_cols=104 Identities=20% Similarity=0.299 Sum_probs=83.9
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccc-cCCCCCCCeeeeeCCCCcccchhhhcCcCCCEE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSG-LENLYLLKYLKLNIPSLKCLHSLLCTLLNLETL 299 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L 299 (350)
.+++|++..|... --+.+..++.|+.|||++|.+..+|.- ...++ |..|.+++|.+++| ..|.+|.+|+.|
T Consensus 188 ale~LnLshNk~~------~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gie~LksL~~L 259 (1096)
T KOG1859|consen 188 ALESLNLSHNKFT------KVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL-RGIENLKSLYGL 259 (1096)
T ss_pred Hhhhhccchhhhh------hhHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh-hhHHhhhhhhcc
Confidence 8999999998873 224788999999999999999988842 23344 99999999999988 568999999999
Q ss_pred EccCCcCcccch--hccccccCcEEEeeccCCCCC
Q 042413 300 EMPSSYIDQSPH--DIWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 300 ~l~~~~l~~lP~--~i~~L~~L~~L~l~~~~~~~~ 332 (350)
|+++|.+....+ -++.|..|+.|.+.+|..+-.
T Consensus 260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred chhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 999995443322 477888999999999876543
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.61 E-value=2.8e-05 Score=78.56 Aligned_cols=108 Identities=19% Similarity=0.131 Sum_probs=83.5
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC--cCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD--QYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLET 298 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~ 298 (350)
+|+.|.+.+...- ....+...-..+|.|+.|.+++-.+. ++-.-..++++|+.||+|+++++.+ ..|++|+|||+
T Consensus 123 nL~~LdI~G~~~~--s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 123 NLQHLDISGSELF--SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred hhhhcCccccchh--hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 8899988875542 23334455566899999999987754 4444456789999999999999999 88999999999
Q ss_pred EEccCCcCcccch--hccccccCcEEEeeccCCCC
Q 042413 299 LEMPSSYIDQSPH--DIWMMQKLMHLYFYCISPCT 331 (350)
Q Consensus 299 L~l~~~~l~~lP~--~i~~L~~L~~L~l~~~~~~~ 331 (350)
|.+++-.+..-+. .+.+|++|++||+|......
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~ 234 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND 234 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeecccccccc
Confidence 9987766555443 78899999999998864433
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.54 E-value=2.9e-05 Score=74.44 Aligned_cols=103 Identities=24% Similarity=0.230 Sum_probs=71.4
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLE 300 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~ 300 (350)
++..+.+.++.+.. +...+..+++|++|++++|.|+.+. .+..+..|+.|++++|.|..++. +..+.+|+.++
T Consensus 96 ~l~~l~l~~n~i~~-----i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~ 168 (414)
T KOG0531|consen 96 SLEALDLYDNKIEK-----IENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISG-LESLKSLKLLD 168 (414)
T ss_pred ceeeeeccccchhh-----cccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccC-Cccchhhhccc
Confidence 77777777776631 1122566788888888888877664 45666778888888888776643 45577888888
Q ss_pred ccCCcCcccchh-ccccccCcEEEeeccCCC
Q 042413 301 MPSSYIDQSPHD-IWMMQKLMHLYFYCISPC 330 (350)
Q Consensus 301 l~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~ 330 (350)
+++|.+..++.. ...+.+|+.+++.+|...
T Consensus 169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 169 LSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred CCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 888877776654 467777888888776543
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.42 E-value=0.00021 Score=67.24 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=45.8
Q ss_pred CCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCC-CCcCccccCCCCCCCeeeeeCC-CCcccchhhhcC
Q 042413 216 KHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAV-LDQYPSGLENLYLLKYLKLNIP-SLKCLHSLLCTL 293 (350)
Q Consensus 216 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~lp~~i~~l~~L~~L~l~~~-~l~~lP~~i~~l 293 (350)
.+. +++.|.+..+.. ..+ |. -..+|+.|.++++. ++.+|..+. .+|++|++++| .+..+|++
T Consensus 50 ~~~--~l~~L~Is~c~L----~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s---- 113 (426)
T PRK15386 50 EAR--ASGRLYIKDCDI----ESL-PV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES---- 113 (426)
T ss_pred Hhc--CCCEEEeCCCCC----ccc-CC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc----
Confidence 445 777777776644 112 11 12347777777654 666666553 46777777776 56667654
Q ss_pred cCCCEEEccCC---cCcccchh
Q 042413 294 LNLETLEMPSS---YIDQSPHD 312 (350)
Q Consensus 294 ~~L~~L~l~~~---~l~~lP~~ 312 (350)
|+.|+++++ .+..+|.+
T Consensus 114 --Le~L~L~~n~~~~L~~LPss 133 (426)
T PRK15386 114 --VRSLEIKGSATDSIKNVPNG 133 (426)
T ss_pred --cceEEeCCCCCcccccCcch
Confidence 444555444 35566654
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.34 E-value=0.00021 Score=60.03 Aligned_cols=85 Identities=21% Similarity=0.237 Sum_probs=42.7
Q ss_pred HHhcCCceeeEEEccCCCCCcCccccCC-CCCCCeeeeeCCCCcccch--hhhcCcCCCEEEccCCcCcccch----hcc
Q 042413 242 NFFKRFKYLRVLNLGSAVLDQYPSGLEN-LYLLKYLKLNIPSLKCLHS--LLCTLLNLETLEMPSSYIDQSPH----DIW 314 (350)
Q Consensus 242 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~-l~~L~~L~l~~~~l~~lP~--~i~~l~~L~~L~l~~~~l~~lP~----~i~ 314 (350)
+.|..++.|..|.|++|.|+.+-..++. +++|..|.|.+|+|.++-+ -+..++.|++|.+-+|.+..-+. -+.
T Consensus 58 ~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~ 137 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLY 137 (233)
T ss_pred ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEE
Confidence 3445555555555555555554444443 3445555555555543311 13344555555555554444432 345
Q ss_pred ccccCcEEEeec
Q 042413 315 MMQKLMHLYFYC 326 (350)
Q Consensus 315 ~L~~L~~L~l~~ 326 (350)
++++|+.||+.+
T Consensus 138 klp~l~~LDF~k 149 (233)
T KOG1644|consen 138 KLPSLRTLDFQK 149 (233)
T ss_pred ecCcceEeehhh
Confidence 555555555543
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.26 E-value=0.00021 Score=64.63 Aligned_cols=133 Identities=15% Similarity=0.066 Sum_probs=96.9
Q ss_pred CCCCeeEEEEecCcc-chh-----h-ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC-----c
Q 042413 195 SLANVKRCFILKDLI-DFF-----S-SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD-----Q 262 (350)
Q Consensus 195 ~~~~~r~L~l~~~~~-~~~-----~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-----~ 262 (350)
.+.++|.+....|.. +.+ . ....+ .|..+.+..+.+...........|..+++|++|||..|.++ .
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~--~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~ 232 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHP--TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA 232 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhcc--ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence 467788888888776 111 1 12335 88888888887753223356677899999999999999987 3
Q ss_pred CccccCCCCCCCeeeeeCCCCcc-----cchhh-hcCcCCCEEEccCCcCcc-----cchhccccccCcEEEeeccCC
Q 042413 263 YPSGLENLYLLKYLKLNIPSLKC-----LHSLL-CTLLNLETLEMPSSYIDQ-----SPHDIWMMQKLMHLYFYCISP 329 (350)
Q Consensus 263 lp~~i~~l~~L~~L~l~~~~l~~-----lP~~i-~~l~~L~~L~l~~~~l~~-----lP~~i~~L~~L~~L~l~~~~~ 329 (350)
+...+..+++|+.|++++|.++. +-..+ ...++|++|.+.+|.++. +-..+...+.|+.|++++|..
T Consensus 233 LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 233 LAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 55667788899999999997752 22223 347899999999996542 334567788999999999876
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.17 E-value=0.00012 Score=70.21 Aligned_cols=89 Identities=21% Similarity=0.237 Sum_probs=76.3
Q ss_pred HHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcE
Q 042413 242 NFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMH 321 (350)
Q Consensus 242 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~ 321 (350)
..+..++.|..|++.+|.++.+...+..+.+|++|++++|.|+.+. .+..+..|+.|++++|.+..++ ++..+.+|+.
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhcc-CCccchhhhc
Confidence 3467889999999999999988766889999999999999999884 4788889999999999888875 4666899999
Q ss_pred EEeeccCCCCC
Q 042413 322 LYFYCISPCTS 332 (350)
Q Consensus 322 L~l~~~~~~~~ 332 (350)
+++++|.....
T Consensus 167 l~l~~n~i~~i 177 (414)
T KOG0531|consen 167 LDLSYNRIVDI 177 (414)
T ss_pred ccCCcchhhhh
Confidence 99988865544
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.04 E-value=0.00092 Score=56.25 Aligned_cols=85 Identities=24% Similarity=0.173 Sum_probs=68.2
Q ss_pred ceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhc-CcCCCEEEccCCcCcccch--hccccccCcEEEe
Q 042413 248 KYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCT-LLNLETLEMPSSYIDQSPH--DIWMMQKLMHLYF 324 (350)
Q Consensus 248 ~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~-l~~L~~L~l~~~~l~~lP~--~i~~L~~L~~L~l 324 (350)
.....+||+.|.+..++ .+..+..|.+|.+++|+|+.+-+.+.. +++|++|.+.+|++.++-+ .+..+++|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 45678999999987664 477889999999999999999777755 5679999999997777644 4667889999999
Q ss_pred eccCCCCCC
Q 042413 325 YCISPCTSK 333 (350)
Q Consensus 325 ~~~~~~~~~ 333 (350)
-+|..+...
T Consensus 121 l~Npv~~k~ 129 (233)
T KOG1644|consen 121 LGNPVEHKK 129 (233)
T ss_pred cCCchhccc
Confidence 888665543
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.79 E-value=0.0005 Score=59.99 Aligned_cols=84 Identities=21% Similarity=0.181 Sum_probs=50.0
Q ss_pred HHhcCCceeeEEEccCC--CCC-cCccccCCCCCCCeeeeeCCCCc---ccchhhhcCcCCCEEEccCCcCcccch----
Q 042413 242 NFFKRFKYLRVLNLGSA--VLD-QYPSGLENLYLLKYLKLNIPSLK---CLHSLLCTLLNLETLEMPSSYIDQSPH---- 311 (350)
Q Consensus 242 ~~~~~l~~L~~L~L~~~--~l~-~lp~~i~~l~~L~~L~l~~~~l~---~lP~~i~~l~~L~~L~l~~~~l~~lP~---- 311 (350)
..|..+++|+.|.++.| .+. .++-....+++|++|++++|+|. .+++ +..+.+|..|++.+|....+-.
T Consensus 59 ~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~Ldl~n~~~~~l~dyre~ 137 (260)
T KOG2739|consen 59 TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENLKSLDLFNCSVTNLDDYREK 137 (260)
T ss_pred ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcchhhhhcccCCccccccHHHH
Confidence 34556677777777777 333 44444445577777777777655 2322 4566677777777774444422
Q ss_pred hccccccCcEEEeec
Q 042413 312 DIWMMQKLMHLYFYC 326 (350)
Q Consensus 312 ~i~~L~~L~~L~l~~ 326 (350)
.+.-+++|++|+-..
T Consensus 138 vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 138 VFLLLPSLKYLDGCD 152 (260)
T ss_pred HHHHhhhhccccccc
Confidence 345566777766644
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.69 E-value=0.00078 Score=58.78 Aligned_cols=39 Identities=31% Similarity=0.279 Sum_probs=17.9
Q ss_pred CCceeeEEEccCCCCCcC--ccccCCCCCCCeeeeeCCCCc
Q 042413 246 RFKYLRVLNLGSAVLDQY--PSGLENLYLLKYLKLNIPSLK 284 (350)
Q Consensus 246 ~l~~L~~L~L~~~~l~~l--p~~i~~l~~L~~L~l~~~~l~ 284 (350)
.+++|++|+|++|.+..+ -.....+.+|..|++.+|...
T Consensus 89 ~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 89 KAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred hCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 345555555555554421 112233444555555555433
No 57
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.64 E-value=0.00072 Score=35.76 Aligned_cols=17 Identities=35% Similarity=0.469 Sum_probs=6.9
Q ss_pred CCeeeeeCCCCcccchh
Q 042413 273 LKYLKLNIPSLKCLHSL 289 (350)
Q Consensus 273 L~~L~l~~~~l~~lP~~ 289 (350)
|++|++++|.++.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 33444444444444433
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.00053 Score=60.97 Aligned_cols=87 Identities=21% Similarity=0.151 Sum_probs=65.6
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcccc-CCCCCCCeeeeeCCCCc--ccchhhhcCcCCC
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGL-ENLYLLKYLKLNIPSLK--CLHSLLCTLLNLE 297 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i-~~l~~L~~L~l~~~~l~--~lP~~i~~l~~L~ 297 (350)
+++-+.+.+|.+. -|+.+...+.+++.|++|+|+.|++.....+. -.+++|+.|-|.++.+. ..-..+..++.++
T Consensus 72 ~v~elDL~~N~iS--dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 72 DVKELDLTGNLIS--DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhcccchhc--cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 8888888888875 36777788889999999999999877443444 36778999999888764 5566677788888
Q ss_pred EEEccCCcCccc
Q 042413 298 TLEMPSSYIDQS 309 (350)
Q Consensus 298 ~L~l~~~~l~~l 309 (350)
.|.++.|++..+
T Consensus 150 elHmS~N~~rq~ 161 (418)
T KOG2982|consen 150 ELHMSDNSLRQL 161 (418)
T ss_pred hhhhccchhhhh
Confidence 888888754433
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.001 Score=59.19 Aligned_cols=35 Identities=34% Similarity=0.366 Sum_probs=14.7
Q ss_pred CceeeEEEccCCCCC--cCccccCCCCCCCeeeeeCC
Q 042413 247 FKYLRVLNLGSAVLD--QYPSGLENLYLLKYLKLNIP 281 (350)
Q Consensus 247 l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~ 281 (350)
.++|++|-|.+..+. ..-..+..++.++.|.++.|
T Consensus 120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 344555555544433 22233333444444444444
No 60
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.55 E-value=0.00096 Score=35.26 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=17.9
Q ss_pred CCCEEEccCCcCcccchhcccc
Q 042413 295 NLETLEMPSSYIDQSPHDIWMM 316 (350)
Q Consensus 295 ~L~~L~l~~~~l~~lP~~i~~L 316 (350)
+|++||+++|.++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5889999999888999887654
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=0.00015 Score=63.72 Aligned_cols=96 Identities=18% Similarity=0.187 Sum_probs=54.7
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccch--hhhcCcCCCE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHS--LLCTLLNLET 298 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~--~i~~l~~L~~ 298 (350)
+++.|++.++..+ --....+|+.|+||.||-|.|+.+. .+..+++|+.|.|+.|.|..+-+ -+.+|++|++
T Consensus 20 ~vkKLNcwg~~L~------DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 20 NVKKLNCWGCGLD------DISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HhhhhcccCCCcc------HHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 5566666666552 1144566777777777777766553 35566667777777766665533 2356666666
Q ss_pred EEccCC-cCcccch-----hccccccCcEEE
Q 042413 299 LEMPSS-YIDQSPH-----DIWMMQKLMHLY 323 (350)
Q Consensus 299 L~l~~~-~l~~lP~-----~i~~L~~L~~L~ 323 (350)
|.|..| ..+.-+. -+.-|++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 666666 3333332 233455555544
No 62
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.41 E-value=0.0034 Score=57.03 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=84.8
Q ss_pred CCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC-----cCccccCCCCCCCeeeeeCCCCc-----ccchh
Q 042413 220 MYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD-----QYPSGLENLYLLKYLKLNIPSLK-----CLHSL 289 (350)
Q Consensus 220 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~l~-----~lP~~ 289 (350)
+.||+++...|.........+...|...+.|..+.++.|.|. -+-..+..++||+.|+|++|-++ .+-..
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 399999999988754445566678888999999999999865 23456778999999999999775 34556
Q ss_pred hhcCcCCCEEEccCCcCccc-----chhc-cccccCcEEEeeccCCC
Q 042413 290 LCTLLNLETLEMPSSYIDQS-----PHDI-WMMQKLMHLYFYCISPC 330 (350)
Q Consensus 290 i~~l~~L~~L~l~~~~l~~l-----P~~i-~~L~~L~~L~l~~~~~~ 330 (350)
++.+++|+.|++++|.+..= -..+ ...++|+.|.+.+|.+.
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 67888999999999965432 2222 23678999999888543
No 63
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.00043 Score=61.57 Aligned_cols=126 Identities=18% Similarity=0.137 Sum_probs=76.3
Q ss_pred CCeeEEEEecCccc---hhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC--cC---ccccC
Q 042413 197 ANVKRCFILKDLID---FFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD--QY---PSGLE 268 (350)
Q Consensus 197 ~~~r~L~l~~~~~~---~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~--~l---p~~i~ 268 (350)
.+++.+++.+...+ .....+.. +|+.+.+..+..- +.....-.+.+++.|..|+|++|.+. .+ -..|+
T Consensus 210 ~kLk~lSlEg~~LdD~I~~~iAkN~--~L~~lnlsm~sG~--t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his 285 (419)
T KOG2120|consen 210 SKLKNLSLEGLRLDDPIVNTIAKNS--NLVRLNLSMCSGF--TENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS 285 (419)
T ss_pred HhhhhccccccccCcHHHHHHhccc--cceeecccccccc--chhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence 45667777776652 12233555 8888888777652 23445567888999999999988744 11 12222
Q ss_pred CCCCCCeeeeeCCC--C--cccchhhhcCcCCCEEEccCC-cCcc-cchhccccccCcEEEeeccC
Q 042413 269 NLYLLKYLKLNIPS--L--KCLHSLLCTLLNLETLEMPSS-YIDQ-SPHDIWMMQKLMHLYFYCIS 328 (350)
Q Consensus 269 ~l~~L~~L~l~~~~--l--~~lP~~i~~l~~L~~L~l~~~-~l~~-lP~~i~~L~~L~~L~l~~~~ 328 (350)
..|..|+++++. + ..+.--..++++|..|||++| .++. +-..|.+++-|+||.++.|.
T Consensus 286 --e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 286 --ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred --hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 356667777752 1 223222356777777787777 4432 22356667777777776663
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.00031 Score=61.90 Aligned_cols=82 Identities=21% Similarity=0.232 Sum_probs=48.2
Q ss_pred CceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccch--hccccccCcEEEe
Q 042413 247 FKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPH--DIWMMQKLMHLYF 324 (350)
Q Consensus 247 l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~--~i~~L~~L~~L~l 324 (350)
+.+.+.|+.-||.++.+. -+.+++.|..|.|+-|+|+.|- .+..+++|+.|.|+.|.|..+-+ -+.+|++|+.|.+
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 444555666666665442 2335666667777766666663 35566667777776665555543 4556666666666
Q ss_pred eccCCC
Q 042413 325 YCISPC 330 (350)
Q Consensus 325 ~~~~~~ 330 (350)
..|.-|
T Consensus 96 ~ENPCc 101 (388)
T KOG2123|consen 96 DENPCC 101 (388)
T ss_pred ccCCcc
Confidence 665433
No 65
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.15 E-value=0.00016 Score=62.05 Aligned_cols=87 Identities=17% Similarity=0.014 Sum_probs=69.6
Q ss_pred HHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcE
Q 042413 242 NFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMH 321 (350)
Q Consensus 242 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~ 321 (350)
..+..++...+||++.|.+..+-..++.+..|.-|+++.|.+..+|...+.+..+..+++..|.....|.++++++.+++
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence 34556677788888888877777777778888888888888888888888888888888888888888888888888888
Q ss_pred EEeeccC
Q 042413 322 LYFYCIS 328 (350)
Q Consensus 322 L~l~~~~ 328 (350)
+++-++.
T Consensus 116 ~e~k~~~ 122 (326)
T KOG0473|consen 116 NEQKKTE 122 (326)
T ss_pred hhhccCc
Confidence 8876653
No 66
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.65 E-value=0.1 Score=55.32 Aligned_cols=149 Identities=15% Similarity=0.149 Sum_probs=97.2
Q ss_pred HHHhhcCCCCCCcEEEEEeCChHHH--hhcccccCCCCCCCceEEcC----CCCCChhhhhhccc--ccc----------
Q 042413 8 NLEQVLPDNQNGSRVLITVTDPELL--LSLEMENGEKIRPDSVLNGG----PMIRLKHESWQFFI--LHY---------- 69 (350)
Q Consensus 8 ~l~~~l~~~~~GSrIivTTR~~~v~--~~~~~~~~~~~~~~~~~~l~----~L~~~~~~s~~Lf~--f~~---------- 69 (350)
.+...++....+-++|||||...-. ...... +...++. +++ .+|+-++|. .+.
T Consensus 141 ~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~-------~~~~~l~~~~l~f~--~~e~~~ll~~~~~~~~~~~~~~~l 211 (903)
T PRK04841 141 AMRFFLRHQPENLTLVVLSRNLPPLGIANLRVR-------DQLLEIGSQQLAFD--HQEAQQFFDQRLSSPIEAAESSRL 211 (903)
T ss_pred HHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhc-------CcceecCHHhCCCC--HHHHHHHHHhccCCCCCHHHHHHH
Confidence 3444444445677898999984211 111111 1456666 899 999999997 442
Q ss_pred ----CCchhHHHHHHHHHH-HHH-------H-------hhhc------cCCCChhhHHHHhhhhcCCCCceeeHHHHHHH
Q 042413 70 ----GSMPLENYFLGEAFL-TVW-------R-------QIYT------VMELPFHLKVCCIYLCVFPPSIEISTRQLYQL 124 (350)
Q Consensus 70 ----~GlPLai~~lg~~L~-~~W-------~-------~~l~------y~~L~~~lk~cfl~~a~Fp~~~~i~~~~li~~ 124 (350)
+|.|+++..++..+. ..| . .+-+ ++.||+..+..++..|+++ .|+.+ +...
T Consensus 212 ~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~-l~~~ 287 (903)
T PRK04841 212 CDDVEGWATALQLIALSARQNNSSLHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDA-LIVR 287 (903)
T ss_pred HHHhCChHHHHHHHHHHHhhCCCchhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHH-HHHH
Confidence 999999998887765 111 1 1111 7999999999999999986 33322 2221
Q ss_pred HHHcCCCCCCChhHHHHHHHHHHHcCcceeeecCCCCCeeEEEeCHHHHHHHHHHh
Q 042413 125 WVAEGFIPYNGEETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVA 180 (350)
Q Consensus 125 w~a~g~i~~~~e~~~~~~~~~Lv~r~li~~~~~~~~g~~~~~~mhdli~dl~~~i~ 180 (350)
-. |.+.+...+++|...+++...... .+ ..|+.|++++++.+...
T Consensus 288 l~--------~~~~~~~~L~~l~~~~l~~~~~~~-~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 288 VT--------GEENGQMRLEELERQGLFIQRMDD-SG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred Hc--------CCCcHHHHHHHHHHCCCeeEeecC-CC--CEEehhHHHHHHHHHHH
Confidence 11 134467889999999997543211 11 35888999999998765
No 67
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.38 E-value=0.011 Score=29.07 Aligned_cols=16 Identities=31% Similarity=0.607 Sum_probs=5.6
Q ss_pred CCCEEEccCCcCcccc
Q 042413 295 NLETLEMPSSYIDQSP 310 (350)
Q Consensus 295 ~L~~L~l~~~~l~~lP 310 (350)
+|++|++++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3444444444444443
No 68
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.10 E-value=0.013 Score=28.74 Aligned_cols=16 Identities=31% Similarity=0.301 Sum_probs=6.7
Q ss_pred CCCeeeeeCCCCcccc
Q 042413 272 LLKYLKLNIPSLKCLH 287 (350)
Q Consensus 272 ~L~~L~l~~~~l~~lP 287 (350)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555554
No 69
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.0012 Score=58.90 Aligned_cols=204 Identities=13% Similarity=0.024 Sum_probs=118.9
Q ss_pred cCCCChh-hHHHHhhhhcCCCCceeeHHHHHHHHHHcCCCCC-----C-C-hhHHHHHHHHHHHcCcceeeecCCCCCee
Q 042413 93 VMELPFH-LKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPY-----N-G-EETAEHYLKELIHRGFIKVSKRRARDTIK 164 (350)
Q Consensus 93 y~~L~~~-lk~cfl~~a~Fp~~~~i~~~~li~~w~a~g~i~~-----~-~-e~~~~~~~~~Lv~r~li~~~~~~~~g~~~ 164 (350)
|+.||++ +-.+| ++.|+.......-+.++|-..|--.. + + ..+-...+..|+.|+.+-.
T Consensus 98 ~~slpDEill~IF---s~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~---------- 164 (419)
T KOG2120|consen 98 WDSLPDEILLGIF---SCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVF---------- 164 (419)
T ss_pred cccCCHHHHHHHH---HhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEE----------
Confidence 6788887 55555 44455544555556666665542211 1 1 4444455666777665532
Q ss_pred EEEeCHHHHHHHHHHhhhcCcEEecCCCCCCCCCeeEEEEecCccchhh----ccCCCCCCeeEEEEecCCCCCCCccch
Q 042413 165 SCYVPSFIYTSLALVAEKTGFVWMPDMEEESLANVKRCFILKDLIDFFS----SLKHSDMYLQSFLNHSSKNNHLNSKDY 240 (350)
Q Consensus 165 ~~~mhdli~dl~~~i~~~~~~~~~~~~~~~~~~~~r~L~l~~~~~~~~~----~~~~~~~~Lr~L~~~~~~~~~~~~~~~ 240 (350)
+. |+....++.+.... .....+++++.+....+.... ...+. +|+.|.+.+.... ...
T Consensus 165 --Rl-------ar~~~~~prlae~~---~~frsRlq~lDLS~s~it~stl~~iLs~C~--kLk~lSlEg~~Ld----D~I 226 (419)
T KOG2120|consen 165 --RL-------ARSFMDQPRLAEHF---SPFRSRLQHLDLSNSVITVSTLHGILSQCS--KLKNLSLEGLRLD----DPI 226 (419)
T ss_pred --Ec-------chhhhcCchhhhhh---hhhhhhhHHhhcchhheeHHHHHHHHHHHH--hhhhccccccccC----cHH
Confidence 11 11111121111100 002245777777776662221 22456 8888888888763 344
Q ss_pred HHHhcCCceeeEEEccCCC-CCcC--ccccCCCCCCCeeeeeCCCCc-c----cchhhhcCcCCCEEEccCC--cCc--c
Q 042413 241 ENFFKRFKYLRVLNLGSAV-LDQY--PSGLENLYLLKYLKLNIPSLK-C----LHSLLCTLLNLETLEMPSS--YID--Q 308 (350)
Q Consensus 241 ~~~~~~l~~L~~L~L~~~~-l~~l--p~~i~~l~~L~~L~l~~~~l~-~----lP~~i~~l~~L~~L~l~~~--~l~--~ 308 (350)
-..+.+-.+|+.|+|+.++ +++. ---+.+++.|..|+++.|.+. + +-..|+ .+|..|++++| ++. .
T Consensus 227 ~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh 304 (419)
T KOG2120|consen 227 VNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSH 304 (419)
T ss_pred HHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhH
Confidence 4567778899999999887 7633 233567888999999998653 2 122233 46888999998 332 2
Q ss_pred cchhccccccCcEEEeeccCC
Q 042413 309 SPHDIWMMQKLMHLYFYCISP 329 (350)
Q Consensus 309 lP~~i~~L~~L~~L~l~~~~~ 329 (350)
+..-..+.++|.+||+++|..
T Consensus 305 ~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 305 LSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred HHHHHHhCCceeeeccccccc
Confidence 323345788999999998743
No 70
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.64 E-value=0.0019 Score=55.59 Aligned_cols=83 Identities=17% Similarity=0.124 Sum_probs=66.9
Q ss_pred CCcCc-cccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCccc
Q 042413 260 LDQYP-SGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSS 338 (350)
Q Consensus 260 l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 338 (350)
++++| ..|.....-+.||++.|++..+-..++.++.|..|+++.|.+.-+|.+++++..++++++.+|..... |.+
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~---p~s 106 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQ---PKS 106 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhC---Ccc
Confidence 44555 56777888999999999998888889999999999999999999999999999999999987754443 444
Q ss_pred ccccccc
Q 042413 339 LKNLIFI 345 (350)
Q Consensus 339 l~~L~~L 345 (350)
.+++..+
T Consensus 107 ~~k~~~~ 113 (326)
T KOG0473|consen 107 QKKEPHP 113 (326)
T ss_pred ccccCCc
Confidence 4444433
No 71
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.46 E-value=0.071 Score=29.12 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=10.2
Q ss_pred cCCCEEEccCCcCcccchh
Q 042413 294 LNLETLEMPSSYIDQSPHD 312 (350)
Q Consensus 294 ~~L~~L~l~~~~l~~lP~~ 312 (350)
.+|++|+|++|.+..+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4455555555555555543
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.46 E-value=0.071 Score=29.12 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=10.2
Q ss_pred cCCCEEEccCCcCcccchh
Q 042413 294 LNLETLEMPSSYIDQSPHD 312 (350)
Q Consensus 294 ~~L~~L~l~~~~l~~lP~~ 312 (350)
.+|++|+|++|.+..+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4455555555555555543
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.15 E-value=0.067 Score=29.24 Aligned_cols=21 Identities=29% Similarity=0.156 Sum_probs=15.6
Q ss_pred CCCCCeeeeeCCCCcccchhh
Q 042413 270 LYLLKYLKLNIPSLKCLHSLL 290 (350)
Q Consensus 270 l~~L~~L~l~~~~l~~lP~~i 290 (350)
|++|++|+|++|.++.+|+..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 456788888888888887764
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.15 E-value=0.067 Score=29.24 Aligned_cols=21 Identities=29% Similarity=0.156 Sum_probs=15.6
Q ss_pred CCCCCeeeeeCCCCcccchhh
Q 042413 270 LYLLKYLKLNIPSLKCLHSLL 290 (350)
Q Consensus 270 l~~L~~L~l~~~~l~~lP~~i 290 (350)
|++|++|+|++|.++.+|+..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 456788888888888887764
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.15 E-value=0.38 Score=37.47 Aligned_cols=97 Identities=20% Similarity=0.206 Sum_probs=50.8
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCcccchhh-hcCcCCCE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCLHSLL-CTLLNLET 298 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~~i-~~l~~L~~ 298 (350)
+|+.+.+.. .. ..+....|.+++.|+.+.+..+ +..++ ..+..+..|+.+.+.+ .+..++... ..+.+|+.
T Consensus 13 ~l~~i~~~~-~~----~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 13 NLESITFPN-TI----KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T--EEEETS-T------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCEEEECC-Ce----eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 677776653 22 3455567777877888888764 66555 3455666788888865 555565443 45788888
Q ss_pred EEccCCcCcccch-hccccccCcEEEeec
Q 042413 299 LEMPSSYIDQSPH-DIWMMQKLMHLYFYC 326 (350)
Q Consensus 299 L~l~~~~l~~lP~-~i~~L~~L~~L~l~~ 326 (350)
+++..+ +..++. .+.+. +|+.+.+..
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 888654 555655 44444 777777654
No 76
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=90.93 E-value=0.11 Score=46.00 Aligned_cols=39 Identities=13% Similarity=0.098 Sum_probs=17.0
Q ss_pred CCCCCCeeeeeCCCCc-ccchhh----hcCcCCCEEEccCCcCc
Q 042413 269 NLYLLKYLKLNIPSLK-CLHSLL----CTLLNLETLEMPSSYID 307 (350)
Q Consensus 269 ~l~~L~~L~l~~~~l~-~lP~~i----~~l~~L~~L~l~~~~l~ 307 (350)
++++|+..+||+|.+. +.|+.+ .+-..|..|.+++|.++
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 3444555555555443 333322 23344555555544443
No 77
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=90.63 E-value=0.46 Score=42.32 Aligned_cols=48 Identities=17% Similarity=0.043 Sum_probs=28.3
Q ss_pred hhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC
Q 042413 212 FSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD 261 (350)
Q Consensus 212 ~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~ 261 (350)
+...+++ ++++..+++|.+.......+.+.+++...|..|.|++|.+-
T Consensus 86 ~aLlkcp--~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 86 KALLKCP--RLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HHHhcCC--cceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 3345566 77777777666643333344455666666666666666543
No 78
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.44 E-value=0.39 Score=37.36 Aligned_cols=85 Identities=13% Similarity=0.152 Sum_probs=52.2
Q ss_pred hHHHhcCCceeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCcccchh-hhcCcCCCEEEccCCcCcccch-hcccc
Q 042413 240 YENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCLHSL-LCTLLNLETLEMPSSYIDQSPH-DIWMM 316 (350)
Q Consensus 240 ~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~~lP~-~i~~L 316 (350)
....|.++++|+.+.+.. .++.++ ..+..+.+|+.+.+.++ +..++.. +..+.+|+.+.+.. .+..++. .+...
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 345678888999999875 566665 45677889999999875 7777654 46677899999976 5555655 45568
Q ss_pred ccCcEEEeecc
Q 042413 317 QKLMHLYFYCI 327 (350)
Q Consensus 317 ~~L~~L~l~~~ 327 (350)
++|+.+.+..+
T Consensus 81 ~~l~~i~~~~~ 91 (129)
T PF13306_consen 81 TNLKNIDIPSN 91 (129)
T ss_dssp TTECEEEETTT
T ss_pred ccccccccCcc
Confidence 89999999653
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.88 E-value=0.21 Score=42.39 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=18.0
Q ss_pred CcCCCEEEccCC-cCcccc-hhccccccCcEEEeec
Q 042413 293 LLNLETLEMPSS-YIDQSP-HDIWMMQKLMHLYFYC 326 (350)
Q Consensus 293 l~~L~~L~l~~~-~l~~lP-~~i~~L~~L~~L~l~~ 326 (350)
.++||+|++++| .|++-- ..+.++++|+.|.+.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 345666666666 555432 2445555566555543
No 80
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.21 E-value=3.9 Score=42.18 Aligned_cols=147 Identities=19% Similarity=0.178 Sum_probs=89.5
Q ss_pred hcCCCCCCcEEEEEeCChHHHhhcccccCCCCCCCceEEcCC----CCCChhhhhhccc-cccCCchhHHHHHHHHHH--
Q 042413 12 VLPDNQNGSRVLITVTDPELLLSLEMENGEKIRPDSVLNGGP----MIRLKHESWQFFI-LHYGSMPLENYFLGEAFL-- 84 (350)
Q Consensus 12 ~l~~~~~GSrIivTTR~~~v~~~~~~~~~~~~~~~~~~~l~~----L~~~~~~s~~Lf~-f~~~GlPLai~~lg~~L~-- 84 (350)
.+.....+=..|||||+.--.....-.. -+...+++. ++ .+|+-++|. - +|+|+-...+..+..
T Consensus 153 Ll~~~P~~l~lvv~SR~rP~l~la~lRl-----r~~llEi~~~~Lrf~--~eE~~~fl~~~--~~l~Ld~~~~~~L~~~t 223 (894)
T COG2909 153 LLKHAPENLTLVVTSRSRPQLGLARLRL-----RDELLEIGSEELRFD--TEEAAAFLNDR--GSLPLDAADLKALYDRT 223 (894)
T ss_pred HHHhCCCCeEEEEEeccCCCCcccceee-----hhhHHhcChHhhcCC--hHHHHHHHHHc--CCCCCChHHHHHHHhhc
Confidence 3445556778999999875432211100 013444432 56 788888887 2 233333333332222
Q ss_pred HH--------------------------------HHhhhc--cCCCChhhHHHHhhhhcCCCCceeeHHHHHHHHHHcCC
Q 042413 85 TV--------------------------------WRQIYT--VMELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGF 130 (350)
Q Consensus 85 ~~--------------------------------W~~~l~--y~~L~~~lk~cfl~~a~Fp~~~~i~~~~li~~w~a~g~ 130 (350)
+- |++..+ ++.||+.+|...+-||+++.=. ++|+..-.
T Consensus 224 eGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f~----~eL~~~Lt---- 295 (894)
T COG2909 224 EGWAAALQLIALALRNNTSAEQSLRGLSGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRFN----DELCNALT---- 295 (894)
T ss_pred ccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhh----HHHHHHHh----
Confidence 22 333333 9999999999999999875421 23333222
Q ss_pred CCCCChhHHHHHHHHHHHcCcceeeecCCCCCeeEEEeCHHHHHHHHHHhhh
Q 042413 131 IPYNGEETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEK 182 (350)
Q Consensus 131 i~~~~e~~~~~~~~~Lv~r~li~~~~~~~~g~~~~~~mhdli~dl~~~i~~~ 182 (350)
|++.|...+++|.+++++-..-. +....|+.|.+..|+-+.-.+.
T Consensus 296 ----g~~ng~amLe~L~~~gLFl~~Ld---d~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 296 ----GEENGQAMLEELERRGLFLQRLD---DEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred ----cCCcHHHHHHHHHhCCCceeeec---CCCceeehhHHHHHHHHhhhcc
Confidence 36678889999999999865432 2236799999999998765554
No 81
>PF05729 NACHT: NACHT domain
Probab=84.10 E-value=1.6 Score=35.35 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=31.8
Q ss_pred CCCcEEEEEeCChHHHh---hcccccCCCCCCCceEEcCCCCCChhhhhhccc
Q 042413 17 QNGSRVLITVTDPELLL---SLEMENGEKIRPDSVLNGGPMIRLKHESWQFFI 66 (350)
Q Consensus 17 ~~GSrIivTTR~~~v~~---~~~~~~~~~~~~~~~~~l~~L~~~~~~s~~Lf~ 66 (350)
-++.+||||||...... ..... ..+++++++ +++..+++.
T Consensus 118 ~~~~~liit~r~~~~~~~~~~~~~~--------~~~~l~~~~--~~~~~~~~~ 160 (166)
T PF05729_consen 118 PPGVKLIITSRPRAFPDLRRRLKQA--------QILELEPFS--EEDIKQYLR 160 (166)
T ss_pred CCCCeEEEEEcCChHHHHHHhcCCC--------cEEEECCCC--HHHHHHHHH
Confidence 56899999999987733 23222 689999999 999999887
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=83.51 E-value=0.74 Score=25.22 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=12.5
Q ss_pred CCCEEEccCCcCcccch
Q 042413 295 NLETLEMPSSYIDQSPH 311 (350)
Q Consensus 295 ~L~~L~l~~~~l~~lP~ 311 (350)
+|+.|++++|++.++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56777777777777775
No 83
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=75.69 E-value=0.89 Score=43.99 Aligned_cols=106 Identities=17% Similarity=0.078 Sum_probs=49.2
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCC-C-CCcC----ccccCCCCCCCeeeeeCCC-Cccc-chhh-h
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSA-V-LDQY----PSGLENLYLLKYLKLNIPS-LKCL-HSLL-C 291 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~-l~~l----p~~i~~l~~L~~L~l~~~~-l~~l-P~~i-~ 291 (350)
.++.+.+.++..-. ..........++.|+.|+++++ . .... +.....+.+|+.|+++.+. ++.. =..+ .
T Consensus 189 ~L~~l~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 189 LLKRLSLSGCSKIT--DDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred hhhHhhhcccccCC--hhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 55555555544310 1113355566666677766652 1 1111 1222334666666666654 3311 1122 2
Q ss_pred cCcCCCEEEccCC-cCccc--chhccccccCcEEEeeccC
Q 042413 292 TLLNLETLEMPSS-YIDQS--PHDIWMMQKLMHLYFYCIS 328 (350)
Q Consensus 292 ~l~~L~~L~l~~~-~l~~l--P~~i~~L~~L~~L~l~~~~ 328 (350)
.+++|++|.+.+| .++.. -.-....++|++|+++.|.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 2556666666555 33221 1122344556666666553
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=73.26 E-value=2.3 Score=23.29 Aligned_cols=12 Identities=25% Similarity=0.252 Sum_probs=5.2
Q ss_pred CCCeeeeeCCCC
Q 042413 272 LLKYLKLNIPSL 283 (350)
Q Consensus 272 ~L~~L~l~~~~l 283 (350)
+|+.|++++|+|
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 344444444443
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=70.44 E-value=1.4 Score=23.25 Aligned_cols=9 Identities=44% Similarity=0.807 Sum_probs=2.8
Q ss_pred CCEEEccCC
Q 042413 296 LETLEMPSS 304 (350)
Q Consensus 296 L~~L~l~~~ 304 (350)
|++|++++|
T Consensus 4 L~~L~l~~n 12 (24)
T PF13516_consen 4 LETLDLSNN 12 (24)
T ss_dssp -SEEE-TSS
T ss_pred CCEEEccCC
Confidence 334444333
No 86
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=69.17 E-value=2 Score=41.58 Aligned_cols=110 Identities=18% Similarity=0.086 Sum_probs=63.4
Q ss_pred ccCCCCCCeeEEEEecC-CCCCCCccchHHHhcCCceeeEEEccCCC-CCcC-ccccC-CCCCCCeeeeeCCC-Cc--cc
Q 042413 214 SLKHSDMYLQSFLNHSS-KNNHLNSKDYENFFKRFKYLRVLNLGSAV-LDQY-PSGLE-NLYLLKYLKLNIPS-LK--CL 286 (350)
Q Consensus 214 ~~~~~~~~Lr~L~~~~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~l-p~~i~-~l~~L~~L~l~~~~-l~--~l 286 (350)
....+ +|+.|.+.++ ................+++|+.|+++++. ++.. -..+. .+++|+.|.+.++. ++ .+
T Consensus 210 ~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl 287 (482)
T KOG1947|consen 210 ALKCP--NLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGL 287 (482)
T ss_pred HhhCc--hhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHH
Confidence 34556 8888888763 11100111122355567888999999887 5522 12222 26788998877765 44 33
Q ss_pred chhhhcCcCCCEEEccCC-cCcc--cchhccccccCcEEEee
Q 042413 287 HSLLCTLLNLETLEMPSS-YIDQ--SPHDIWMMQKLMHLYFY 325 (350)
Q Consensus 287 P~~i~~l~~L~~L~l~~~-~l~~--lP~~i~~L~~L~~L~l~ 325 (350)
-.-...+++|+.|++++| .+.. +.....+.++|+.|.+.
T Consensus 288 ~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 288 VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 333466788999999988 5422 33333344555554443
No 87
>PRK06893 DNA replication initiation factor; Validated
Probab=62.19 E-value=9.8 Score=33.19 Aligned_cols=66 Identities=12% Similarity=0.257 Sum_probs=41.6
Q ss_pred hhHHH-HHhhcCCC-CCCcEEEEEeCC----------hHHHhhcccccCCCCCCCceEEcCCCCCChhhhhhccc--ccc
Q 042413 4 QQWDN-LEQVLPDN-QNGSRVLITVTD----------PELLLSLEMENGEKIRPDSVLNGGPMIRLKHESWQFFI--LHY 69 (350)
Q Consensus 4 ~~w~~-l~~~l~~~-~~GSrIivTTR~----------~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~s~~Lf~--f~~ 69 (350)
..|+. +...+... ..|++|||||.+ +.+.+.++.. .++++++++ +++.++++. +..
T Consensus 107 ~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g--------~~~~l~~pd--~e~~~~iL~~~a~~ 176 (229)
T PRK06893 107 EEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWG--------EIYQLNDLT--DEQKIIVLQRNAYQ 176 (229)
T ss_pred hHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcC--------CeeeCCCCC--HHHHHHHHHHHHHH
Confidence 34552 33334322 346677665554 3666666554 889999999 999999998 333
Q ss_pred CCchhHHHHH
Q 042413 70 GSMPLENYFL 79 (350)
Q Consensus 70 ~GlPLai~~l 79 (350)
.|+++.-.++
T Consensus 177 ~~l~l~~~v~ 186 (229)
T PRK06893 177 RGIELSDEVA 186 (229)
T ss_pred cCCCCCHHHH
Confidence 5666554444
No 88
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=58.70 E-value=49 Score=30.49 Aligned_cols=119 Identities=15% Similarity=-0.015 Sum_probs=68.7
Q ss_pred CcEEEEEeCChHHHhhcccccCCCCCCCceEEcCCCCCChhhhhhccc--ccc-----------------CCchhHHHHH
Q 042413 19 GSRVLITVTDPELLLSLEMENGEKIRPDSVLNGGPMIRLKHESWQFFI--LHY-----------------GSMPLENYFL 79 (350)
Q Consensus 19 GSrIivTTR~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~s~~Lf~--f~~-----------------~GlPLai~~l 79 (350)
.+-|..|||...+......- .+..+++++++ .++..+++. .+. +|.|-.+..+
T Consensus 151 ~~li~at~~~~~l~~~L~sR------f~~~~~l~~~~--~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~ 222 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDR------FGIVQRLEFYT--VEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRL 222 (328)
T ss_pred ceEEeecCCcccCCHHHHHh------cCeeeecCCCC--HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHH
Confidence 44566677755544332111 12578999999 999999998 222 7888544333
Q ss_pred HHHHHHHHHhhh------c-------------cCCCChhhHHHHh-hhhcCCCCceeeHHHHHHHHHHcCCCCCCChhHH
Q 042413 80 GEAFLTVWRQIY------T-------------VMELPFHLKVCCI-YLCVFPPSIEISTRQLYQLWVAEGFIPYNGEETA 139 (350)
Q Consensus 80 g~~L~~~W~~~l------~-------------y~~L~~~lk~cfl-~~a~Fp~~~~i~~~~li~~w~a~g~i~~~~e~~~ 139 (350)
...+ ..|..+. . |..|++..+..+. ....|+.+ .+..+.+.... -.. .+.+
T Consensus 223 l~~~-~~~a~~~~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l-----g~~--~~~~ 293 (328)
T PRK00080 223 LRRV-RDFAQVKGDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL-----GEE--RDTI 293 (328)
T ss_pred HHHH-HHHHHHcCCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH-----CCC--cchH
Confidence 3322 2222111 1 6778877777664 55566655 45555542222 111 5566
Q ss_pred HHHHH-HHHHcCccee
Q 042413 140 EHYLK-ELIHRGFIKV 154 (350)
Q Consensus 140 ~~~~~-~Lv~r~li~~ 154 (350)
+..++ .|++.+||+.
T Consensus 294 ~~~~e~~Li~~~li~~ 309 (328)
T PRK00080 294 EDVYEPYLIQQGFIQR 309 (328)
T ss_pred HHHhhHHHHHcCCccc
Confidence 66666 8999999963
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=58.00 E-value=7.1 Score=21.58 Aligned_cols=12 Identities=42% Similarity=0.512 Sum_probs=6.4
Q ss_pred eeeEEEccCCCC
Q 042413 249 YLRVLNLGSAVL 260 (350)
Q Consensus 249 ~L~~L~L~~~~l 260 (350)
+|++|||++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 455555555554
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=55.23 E-value=8.5 Score=20.71 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=8.6
Q ss_pred cCCCEEEccCC-cCc
Q 042413 294 LNLETLEMPSS-YID 307 (350)
Q Consensus 294 ~~L~~L~l~~~-~l~ 307 (350)
++|+.|++++| .++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 45666777666 444
No 91
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=51.88 E-value=7.9 Score=36.74 Aligned_cols=106 Identities=20% Similarity=0.190 Sum_probs=55.4
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC---cCccccCCCCCCCeeeeeCCC-Cc-----ccchhhh
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD---QYPSGLENLYLLKYLKLNIPS-LK-----CLHSLLC 291 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~---~lp~~i~~l~~L~~L~l~~~~-l~-----~lP~~i~ 291 (350)
+|+.+.+.++..- ...-....-.+.+.|+.+++..+... .+-.--.+.+.||.|.++++. ++ .+-..-+
T Consensus 321 ~L~~l~l~~c~~f--sd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c 398 (483)
T KOG4341|consen 321 NLQVLELSGCQQF--SDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC 398 (483)
T ss_pred ceEEEeccccchh--hhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence 7777777766531 01112233345666666776666522 222222345667777777653 22 2233345
Q ss_pred cCcCCCEEEccCC-cCcc-cchhccccccCcEEEeeccC
Q 042413 292 TLLNLETLEMPSS-YIDQ-SPHDIWMMQKLMHLYFYCIS 328 (350)
Q Consensus 292 ~l~~L~~L~l~~~-~l~~-lP~~i~~L~~L~~L~l~~~~ 328 (350)
.+..|..+.+++| .+.+ .-+.+...++|+.+++.++.
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 5666777777777 3321 12234445567777776653
No 92
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=49.96 E-value=84 Score=28.41 Aligned_cols=120 Identities=14% Similarity=-0.006 Sum_probs=67.2
Q ss_pred CcEEEEEeCChHHHhhcccccCCCCCCCceEEcCCCCCChhhhhhccc--ccc-----------------CCchhHHHHH
Q 042413 19 GSRVLITVTDPELLLSLEMENGEKIRPDSVLNGGPMIRLKHESWQFFI--LHY-----------------GSMPLENYFL 79 (350)
Q Consensus 19 GSrIivTTR~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~s~~Lf~--f~~-----------------~GlPLai~~l 79 (350)
.+-|.+|||...+......- ....+++++++ .++..+++. .+. +|.|-.+..+
T Consensus 130 ~~li~~t~~~~~l~~~l~sR------~~~~~~l~~l~--~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~l 201 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDR------FGIILRLEFYT--VEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRL 201 (305)
T ss_pred eEEEEecCCccccCHHHHhh------cceEEEeCCCC--HHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHH
Confidence 45566677765554332111 12678999999 999999988 221 7888655444
Q ss_pred HHHHH-------------HHHHhhhc-----cCCCChhhHHHHh-hhhcCCCCceeeHHHHHHHHHHcCCCCCCChhHHH
Q 042413 80 GEAFL-------------TVWRQIYT-----VMELPFHLKVCCI-YLCVFPPSIEISTRQLYQLWVAEGFIPYNGEETAE 140 (350)
Q Consensus 80 g~~L~-------------~~W~~~l~-----y~~L~~~lk~cfl-~~a~Fp~~~~i~~~~li~~w~a~g~i~~~~e~~~~ 140 (350)
...+. +.-+.+++ |..++++.+..+. ..+.+..+ .+..+++.... |- . ...++
T Consensus 202 l~~~~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~--~--~~~~~ 273 (305)
T TIGR00635 202 LRRVRDFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE--D--ADTIE 273 (305)
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC--C--cchHH
Confidence 43321 11111111 7777777666544 44555432 34443332221 11 1 55677
Q ss_pred HHHH-HHHHcCccee
Q 042413 141 HYLK-ELIHRGFIKV 154 (350)
Q Consensus 141 ~~~~-~Lv~r~li~~ 154 (350)
..++ .|+++++|+.
T Consensus 274 ~~~e~~Li~~~li~~ 288 (305)
T TIGR00635 274 DVYEPYLLQIGFLQR 288 (305)
T ss_pred HhhhHHHHHcCCccc
Confidence 7778 6999999963
No 93
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.09 E-value=4.7 Score=34.42 Aligned_cols=62 Identities=19% Similarity=0.211 Sum_probs=32.9
Q ss_pred HHhcCCceeeEEEccCCC-CCcC-ccccC-CCCCCCeeeeeCCC-Cccc-chhhhcCcCCCEEEccC
Q 042413 242 NFFKRFKYLRVLNLGSAV-LDQY-PSGLE-NLYLLKYLKLNIPS-LKCL-HSLLCTLLNLETLEMPS 303 (350)
Q Consensus 242 ~~~~~l~~L~~L~L~~~~-l~~l-p~~i~-~l~~L~~L~l~~~~-l~~l-P~~i~~l~~L~~L~l~~ 303 (350)
..+.+++.++.|.+.+|. +... -+.++ -.++|+.|++++|. |++- -..+.++++|+.|.+.+
T Consensus 119 e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 119 EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 344455555555555554 3210 11222 34677777777763 5522 24566777777776655
No 94
>COG5439 Uncharacterized conserved protein [Function unknown]
Probab=42.56 E-value=12 Score=27.33 Aligned_cols=19 Identities=42% Similarity=0.546 Sum_probs=13.6
Q ss_pred CCCCcccccccccccccCC
Q 042413 332 SKNYSSSLKNLIFISALHP 350 (350)
Q Consensus 332 ~~~~~~~l~~L~~L~~L~~ 350 (350)
.+++|...+.|.+|+.|||
T Consensus 87 s~~ipWQ~KSLpNLkkLhP 105 (112)
T COG5439 87 SKNIPWQMKSLPNLKKLHP 105 (112)
T ss_pred CCCCcchhccccchHhhCC
Confidence 3446667777888888887
No 95
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=37.59 E-value=92 Score=28.47 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=42.8
Q ss_pred CChhhHHHHHhhcCCCCCCcEEEEEeCChHHH-hhcccccCCCCCCCceEEcCCCCCChhhhhhccc
Q 042413 1 MTFQQWDNLEQVLPDNQNGSRVLITVTDPELL-LSLEMENGEKIRPDSVLNGGPMIRLKHESWQFFI 66 (350)
Q Consensus 1 ~~~~~w~~l~~~l~~~~~GSrIivTTR~~~v~-~~~~~~~~~~~~~~~~~~l~~L~~~~~~s~~Lf~ 66 (350)
|+.+.|+.+...+..-.+++.+|++|.+.+.+ ....... ..+++.+++ +++..+...
T Consensus 105 m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc-------~~~~~~~~~--~~~~~~~l~ 162 (313)
T PRK05564 105 MTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC-------QIYKLNRLS--KEEIEKFIS 162 (313)
T ss_pred cCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhc-------eeeeCCCcC--HHHHHHHHH
Confidence 56778899999999888899999999776533 3333322 789999999 888766665
No 96
>PF14162 YozD: YozD-like protein
Probab=36.37 E-value=38 Score=21.79 Aligned_cols=20 Identities=40% Similarity=0.810 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHcCcceee
Q 042413 136 EETAEHYLKELIHRGFIKVS 155 (350)
Q Consensus 136 e~~~~~~~~~Lv~r~li~~~ 155 (350)
+++|+-.+.+|+.||++...
T Consensus 11 EEIAefFy~eL~kRGyvP~e 30 (57)
T PF14162_consen 11 EEIAEFFYHELVKRGYVPTE 30 (57)
T ss_pred HHHHHHHHHHHHHccCCCcH
Confidence 88999999999999999653
No 97
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=35.32 E-value=22 Score=34.97 Aligned_cols=82 Identities=22% Similarity=0.125 Sum_probs=48.5
Q ss_pred HhcCCceeeEEEccCCCCCcC---ccccCCCCCCCeeeeeCC--CCcccchhhhcC--cCCCEEEccCCcCc-cc--ch-
Q 042413 243 FFKRFKYLRVLNLGSAVLDQY---PSGLENLYLLKYLKLNIP--SLKCLHSLLCTL--LNLETLEMPSSYID-QS--PH- 311 (350)
Q Consensus 243 ~~~~l~~L~~L~L~~~~l~~l---p~~i~~l~~L~~L~l~~~--~l~~lP~~i~~l--~~L~~L~l~~~~l~-~l--P~- 311 (350)
.-.+.+.+..++|++|++..+ ..-...-++|+.|+|++| .+...+ ++.++ ..|++|-+.+|.+. .+ +.
T Consensus 213 ~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~tf~~~s~ 291 (585)
T KOG3763|consen 213 IEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTTFSDRSE 291 (585)
T ss_pred hhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccchhhhHH
Confidence 345677788888888886533 222234678888899888 444332 23333 45788888888443 22 22
Q ss_pred hcc----ccccCcEEEee
Q 042413 312 DIW----MMQKLMHLYFY 325 (350)
Q Consensus 312 ~i~----~L~~L~~L~l~ 325 (350)
.+. ..++|..||-.
T Consensus 292 yv~~i~~~FPKL~~LDG~ 309 (585)
T KOG3763|consen 292 YVSAIRELFPKLLRLDGV 309 (585)
T ss_pred HHHHHHHhcchheeecCc
Confidence 122 45677766653
No 98
>PF13730 HTH_36: Helix-turn-helix domain
Probab=33.35 E-value=1.3e+02 Score=19.10 Aligned_cols=51 Identities=22% Similarity=0.306 Sum_probs=29.8
Q ss_pred CCChhhHHHHhhhhcCCCCc--eee-HHHHHHHHHHcCCCCCCChhHHHHHHHHHHHcCcc
Q 042413 95 ELPFHLKVCCIYLCVFPPSI--EIS-TRQLYQLWVAEGFIPYNGEETAEHYLKELIHRGFI 152 (350)
Q Consensus 95 ~L~~~lk~cfl~~a~Fp~~~--~i~-~~~li~~w~a~g~i~~~~e~~~~~~~~~Lv~r~li 152 (350)
+|++..+..+.++.-|..+. .++ .+.+ ....+.+ ......++++|+++++|
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~l-a~~~g~s------~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETL-AKDLGVS------RRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHH-HHHHCcC------HHHHHHHHHHHHHCcCC
Confidence 57777777777766554221 222 2222 1111111 67788999999998875
No 99
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=28.88 E-value=39 Score=32.25 Aligned_cols=88 Identities=20% Similarity=0.144 Sum_probs=52.1
Q ss_pred HHhcCCceeeEEEccCCC-CCcCc-ccc-CCCCCCCeeeeeCCCCc---ccchhhhcCcCCCEEEccCC-cCccc-----
Q 042413 242 NFFKRFKYLRVLNLGSAV-LDQYP-SGL-ENLYLLKYLKLNIPSLK---CLHSLLCTLLNLETLEMPSS-YIDQS----- 309 (350)
Q Consensus 242 ~~~~~l~~L~~L~L~~~~-l~~lp-~~i-~~l~~L~~L~l~~~~l~---~lP~~i~~l~~L~~L~l~~~-~l~~l----- 309 (350)
..-.+..+|++|-+++++ ++..- ..+ .+.++|+.+++.++... .|-.---+++.||.|.++.| .++..
T Consensus 314 aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l 393 (483)
T KOG4341|consen 314 ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL 393 (483)
T ss_pred HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence 334456778888887776 44211 112 24677777877776532 23222245678888888888 54433
Q ss_pred chhccccccCcEEEeeccCC
Q 042413 310 PHDIWMMQKLMHLYFYCISP 329 (350)
Q Consensus 310 P~~i~~L~~L~~L~l~~~~~ 329 (350)
-..-..+..|..+.++++..
T Consensus 394 ~~~~c~~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 394 SSSSCSLEGLEVLELDNCPL 413 (483)
T ss_pred hhccccccccceeeecCCCC
Confidence 33344566778888877643
No 100
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=27.98 E-value=31 Score=34.08 Aligned_cols=61 Identities=16% Similarity=0.116 Sum_probs=38.1
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCC--CCCcCc--cccCCCCCCCeeeeeCCCCc
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSA--VLDQYP--SGLENLYLLKYLKLNIPSLK 284 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~--~l~~lp--~~i~~l~~L~~L~l~~~~l~ 284 (350)
.+.++.+..|.... .......-...++|..|+|++| .+...+ ..++. ..|+.|-+.+|.+.
T Consensus 219 ~i~sl~lsnNrL~~--Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 219 EILSLSLSNNRLYH--LDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLC 283 (585)
T ss_pred ceeeeecccchhhc--hhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccc
Confidence 77777777777642 3344455566788888888888 333222 12233 34778888888764
No 101
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=25.77 E-value=2.2e+02 Score=19.36 Aligned_cols=42 Identities=24% Similarity=0.377 Sum_probs=32.8
Q ss_pred eeeHHHHHHHHHH--cCCCCCCChhHHHHHHHHHHHcCcceeeecC
Q 042413 115 EISTRQLYQLWVA--EGFIPYNGEETAEHYLKELIHRGFIKVSKRR 158 (350)
Q Consensus 115 ~i~~~~li~~w~a--~g~i~~~~e~~~~~~~~~Lv~r~li~~~~~~ 158 (350)
.|.-.++|...+. +|++.. .+.|...-+.|++.++|..+...
T Consensus 17 ~F~G~e~v~WL~~~~~~~~~~--r~eA~~l~q~Ll~~g~i~~v~~~ 60 (74)
T PF00610_consen 17 CFTGSEAVDWLMDNFEGFVRD--REEAVQLGQELLDHGFIEHVSDK 60 (74)
T ss_dssp EEEHHHHHHHHHHTSCTSTSS--HHHHHHHHHHHHHCTSEEESSSS
T ss_pred EeEhHHHHHHHHHhccccccC--HHHHHHHHHHHHHCCCEEECCCC
Confidence 3566778886665 566666 88899999999999999987643
No 102
>KOG4233 consensus DNA-bridging protein BAF [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=25.43 E-value=1.9e+02 Score=20.53 Aligned_cols=33 Identities=12% Similarity=0.035 Sum_probs=26.3
Q ss_pred ceEEcCCCCCChhhhhhccccccCCchhHHHHHHHHHH
Q 042413 47 SVLNGGPMIRLKHESWQFFILHYGSMPLENYFLGEAFL 84 (350)
Q Consensus 47 ~~~~l~~L~~~~~~s~~Lf~f~~~GlPLai~~lg~~L~ 84 (350)
.+-.+.++. +.-+-.|-. .|.-.|-+++|.+|-
T Consensus 20 ~V~~laGIg--~~lg~~L~~---~GfdkAYvllGQfLl 52 (90)
T KOG4233|consen 20 DVTWLAGIG--ETLGIKLVD---AGFDKAYVLLGQFLL 52 (90)
T ss_pred cceeecccc--HHhhhhHHh---ccccHHHHHHHHHHH
Confidence 677777777 766666665 888899999999986
No 103
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=24.91 E-value=98 Score=29.55 Aligned_cols=142 Identities=20% Similarity=0.097 Sum_probs=82.9
Q ss_pred hhhHHHHHhhcCCCCCCcEEEEEeCChHHHhhcccccCCCCCCCceEEcCCCCCChhhhhh-------------ccc--c
Q 042413 3 FQQWDNLEQVLPDNQNGSRVLITVTDPELLLSLEMENGEKIRPDSVLNGGPMIRLKHESWQ-------------FFI--L 67 (350)
Q Consensus 3 ~~~w~~l~~~l~~~~~GSrIivTTR~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~s~~-------------Lf~--f 67 (350)
...|+.....+.+.++. +|+||+-+..+...-....+++ -...+++-||+ -.|-.. +|. +
T Consensus 106 v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~G--R~~~~~l~PlS--F~Efl~~~~~~~~~~~~~~~f~~Yl 180 (398)
T COG1373 106 VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAG--RGKDLELYPLS--FREFLKLKGEEIEPSKLELLFEKYL 180 (398)
T ss_pred chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCC--CceeEEECCCC--HHHHHhhcccccchhHHHHHHHHHH
Confidence 35788887888877766 8999998887765543332222 24789999999 777765 344 3
Q ss_pred ccCCchhHHHHHHHHH--HHHHH-----hhhc-cCCCC-hhhHHHHhhhhcCCCCceeeHHHHHHHHHHcCCCCCCChhH
Q 042413 68 HYGSMPLENYFLGEAF--LTVWR-----QIYT-VMELP-FHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNGEET 138 (350)
Q Consensus 68 ~~~GlPLai~~lg~~L--~~~W~-----~~l~-y~~L~-~~lk~cfl~~a~Fp~~~~i~~~~li~~w~a~g~i~~~~e~~ 138 (350)
..||.|-++..-...- ...-. ++.+ +..-+ ..+|..+.+++.. .+..++-..+.+.+- |. +...
T Consensus 181 ~~GGfP~~v~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~k~i~~~l~~~-~g~~~s~~~la~~l~--~i----s~~T 253 (398)
T COG1373 181 ETGGFPESVKADLSEKKLKEYLDTILKRDIIERGKIENADLMKRILRFLASN-IGSPISYSSLARELK--GI----SKDT 253 (398)
T ss_pred HhCCCcHHHhCcchhhHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHhh-cCCccCHHHHHHHHh--cc----chHH
Confidence 3389998876633211 11111 1111 22122 3466665555543 334455566666553 11 0456
Q ss_pred HHHHHHHHHHcCcceeee
Q 042413 139 AEHYLKELIHRGFIKVSK 156 (350)
Q Consensus 139 ~~~~~~~Lv~r~li~~~~ 156 (350)
...|++-|.+.-++....
T Consensus 254 i~~Yl~~le~~fll~~~~ 271 (398)
T COG1373 254 IRKYLSYLEDAFLLFLVP 271 (398)
T ss_pred HHHHHHHHHHhhheEEec
Confidence 777888887777766443
No 104
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=24.54 E-value=1.9e+02 Score=27.19 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=39.3
Q ss_pred CChhhHHHHHhhcCCCCCCcEEEEEeCChH-HHhhcccccCCCCCCCceEEcCCCCCChhhhhhccc
Q 042413 1 MTFQQWDNLEQVLPDNQNGSRVLITVTDPE-LLLSLEMENGEKIRPDSVLNGGPMIRLKHESWQFFI 66 (350)
Q Consensus 1 ~~~~~w~~l~~~l~~~~~GSrIivTTR~~~-v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~s~~Lf~ 66 (350)
|+......+...+..-..+..+|++|.+.+ +........ ..+.+.+++ .++..++..
T Consensus 153 m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc-------~~i~l~~l~--~~~i~~~L~ 210 (365)
T PRK07471 153 MNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRC-------RKLRLRPLA--PEDVIDALA 210 (365)
T ss_pred cCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccc-------eEEECCCCC--HHHHHHHHH
Confidence 355566667666665555777888887764 433333322 789999999 999988887
No 105
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=24.04 E-value=4.8 Score=39.39 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=6.4
Q ss_pred hhcCcCCCEEEccCC
Q 042413 290 LCTLLNLETLEMPSS 304 (350)
Q Consensus 290 i~~l~~L~~L~l~~~ 304 (350)
+..+.++++|.+..|
T Consensus 286 l~~~~~l~~l~l~~n 300 (478)
T KOG4308|consen 286 LVSCRQLEELSLSNN 300 (478)
T ss_pred HhhhHHHHHhhcccC
Confidence 333444444444444
No 106
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=23.77 E-value=3.5 Score=40.28 Aligned_cols=110 Identities=20% Similarity=0.089 Sum_probs=57.2
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCC-ceeeEEEccCCCCC-----cCccccCCCCCCCeeeeeCCCCc-----ccchh
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRF-KYLRVLNLGSAVLD-----QYPSGLENLYLLKYLKLNIPSLK-----CLHSL 289 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~l~-----~lP~~ 289 (350)
.|..|.+.++.............+... ..|++|++..|.++ .+...+....+++.++++.|.+. .++..
T Consensus 116 ~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~ 195 (478)
T KOG4308|consen 116 TLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQA 195 (478)
T ss_pred cHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhh
Confidence 666666666665321112222333333 45666666666654 34455555667777777776552 22333
Q ss_pred hh----cCcCCCEEEccCCcCccc-----chhcccccc-CcEEEeeccCCC
Q 042413 290 LC----TLLNLETLEMPSSYIDQS-----PHDIWMMQK-LMHLYFYCISPC 330 (350)
Q Consensus 290 i~----~l~~L~~L~l~~~~l~~l-----P~~i~~L~~-L~~L~l~~~~~~ 330 (350)
+. ...++++|.+..|.++.- -..+...++ ++.|++.+|...
T Consensus 196 l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 196 LESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred hhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 33 356677777777754421 113344444 555666665443
No 107
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=22.92 E-value=2.2e+02 Score=18.33 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=39.1
Q ss_pred CCChhhHHHHhhhhcCCCCceeeHHHHHHHHHHcCCCCCCChhHHHHHHHHHHHcCcceeeecCCCC
Q 042413 95 ELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNGEETAEHYLKELIHRGFIKVSKRRARD 161 (350)
Q Consensus 95 ~L~~~lk~cfl~~a~Fp~~~~i~~~~li~~w~a~g~i~~~~e~~~~~~~~~Lv~r~li~~~~~~~~g 161 (350)
+|+...-.++.++..+|.+ .+...++.+.+--. .......++.|.+++++.......++
T Consensus 2 glt~~q~~vL~~l~~~~~~-~~t~~~la~~l~~~-------~~~vs~~v~~L~~~Glv~r~~~~~D~ 60 (62)
T PF12802_consen 2 GLTPSQFRVLMALARHPGE-ELTQSELAERLGIS-------KSTVSRIVKRLEKKGLVERERDPGDR 60 (62)
T ss_dssp TSTHHHHHHHHHHHHSTTS-GEEHHHHHHHHTS--------HHHHHHHHHHHHHTTSEEEEE-SSST
T ss_pred ccCHHHHHHHHHHHHCCCC-CcCHHHHHHHHCcC-------HHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence 4556666677778887776 44556665544221 45677889999999999887654443
No 108
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=22.10 E-value=2.6e+02 Score=20.11 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=30.9
Q ss_pred eHHHHHHHHHHcCCCCCCChhHHHHHHHHHHHcCcceeeec
Q 042413 117 STRQLYQLWVAEGFIPYNGEETAEHYLKELIHRGFIKVSKR 157 (350)
Q Consensus 117 ~~~~li~~w~a~g~i~~~~e~~~~~~~~~Lv~r~li~~~~~ 157 (350)
.-.++|...+..|.+.. .+.|-.+-+.|++.++|..+..
T Consensus 32 ~GselVdWL~~~~~~~s--R~eAv~lg~~Ll~~G~i~HV~~ 70 (83)
T cd04443 32 CGCDLVSWLIEVGLAQD--RGEAVLYGRRLLQGGVLQHITN 70 (83)
T ss_pred cHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCEEecCC
Confidence 45678886666666665 7789999999999999998764
No 109
>PF13173 AAA_14: AAA domain
Probab=20.90 E-value=1.4e+02 Score=22.96 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=32.6
Q ss_pred hHHHHHhhcCCCCCCcEEEEEeCChHHHhhcccccCCCCCCCceEEcCCCCCChhh
Q 042413 5 QWDNLEQVLPDNQNGSRVLITVTDPELLLSLEMENGEKIRPDSVLNGGPMIRLKHE 60 (350)
Q Consensus 5 ~w~~l~~~l~~~~~GSrIivTTR~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~ 60 (350)
.|......+-+..+..+||+|+.+......-.... -.|-...+++.||+ -.|
T Consensus 75 ~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~--l~gr~~~~~l~Pls--f~E 126 (128)
T PF13173_consen 75 DWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAES--LAGRVIEIELYPLS--FRE 126 (128)
T ss_pred cHHHHHHHHHHhccCceEEEEccchHHHhhccccc--CCCeEEEEEECCCC--HHH
Confidence 46665555555556789999999988875422111 11233678999998 544
No 110
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=20.40 E-value=2.8e+02 Score=18.99 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=31.4
Q ss_pred eeHHHHHHHHHHcCCCCCCChhHHHHHHHHHHHcCcceeeec
Q 042413 116 ISTRQLYQLWVAEGFIPYNGEETAEHYLKELIHRGFIKVSKR 157 (350)
Q Consensus 116 i~~~~li~~w~a~g~i~~~~e~~~~~~~~~Lv~r~li~~~~~ 157 (350)
|.-.++|...+..+.+.. .+.|..+-+.|++.++|..+..
T Consensus 21 F~G~e~v~wL~~~~~~~~--r~eA~~l~~~ll~~g~i~~v~~ 60 (77)
T smart00049 21 FTGSELVDWLMDNLEIID--REEAVHLGQLLLDEGLIHHVNG 60 (77)
T ss_pred eEcHHHHHHHHHcCCcCC--HHHHHHHHHHHHHCCCEEEeCC
Confidence 456778886666666545 7889999999999999998763
Done!