Query 042413
Match_columns 350
No_of_seqs 364 out of 2593
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 09:58:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042413.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042413hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 1.9E-27 6.6E-32 233.9 9.4 151 18-185 264-473 (549)
2 1vt4_I APAF-1 related killer D 99.9 1.4E-22 4.7E-27 205.6 10.3 149 1-177 254-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.9 3.9E-22 1.3E-26 213.1 12.6 147 17-183 255-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 99.8 2.3E-18 7.7E-23 170.8 13.9 143 17-180 255-449 (591)
5 4fcg_A Uncharacterized protein 99.6 9.4E-15 3.2E-19 134.3 10.0 85 244-328 202-288 (328)
6 4fcg_A Uncharacterized protein 99.5 1.7E-14 5.7E-19 132.6 10.5 143 197-347 127-281 (328)
7 3m19_A Variable lymphocyte rec 99.5 4.1E-14 1.4E-18 124.8 11.6 132 195-332 33-170 (251)
8 3e6j_A Variable lymphocyte rec 99.5 5.1E-14 1.8E-18 122.6 10.4 128 196-329 39-171 (229)
9 3rfs_A Internalin B, repeat mo 99.5 8.8E-14 3E-18 124.2 11.4 131 196-332 62-196 (272)
10 2v9t_B SLIT homolog 2 protein 99.5 6.8E-14 2.3E-18 121.1 9.9 128 196-329 31-164 (220)
11 4ezg_A Putative uncharacterize 99.5 1.9E-13 6.5E-18 116.0 12.5 139 197-345 44-186 (197)
12 2o6q_A Variable lymphocyte rec 99.5 2.7E-13 9.2E-18 120.9 12.1 130 197-332 61-196 (270)
13 4b8c_D Glucose-repressible alc 99.5 1.1E-13 3.9E-18 140.1 10.8 107 239-348 215-321 (727)
14 2ell_A Acidic leucine-rich nuc 99.5 1.2E-13 4E-18 114.1 8.8 124 197-328 24-158 (168)
15 2o6q_A Variable lymphocyte rec 99.5 2.8E-13 9.5E-18 120.8 11.9 131 196-332 36-172 (270)
16 2v70_A SLIT-2, SLIT homolog 2 99.5 1.6E-13 5.5E-18 118.7 9.6 128 196-329 31-165 (220)
17 3e6j_A Variable lymphocyte rec 99.5 3E-13 1E-17 117.7 11.1 121 221-345 41-164 (229)
18 2je0_A Acidic leucine-rich nuc 99.4 6.8E-14 2.3E-18 113.2 5.9 109 221-333 18-129 (149)
19 1ozn_A Reticulon 4 receptor; N 99.4 3.6E-13 1.2E-17 120.9 10.7 107 221-331 106-215 (285)
20 2o6s_A Variable lymphocyte rec 99.4 5.2E-13 1.8E-17 114.2 11.0 130 195-330 26-161 (208)
21 1p9a_G Platelet glycoprotein I 99.4 5.4E-13 1.9E-17 120.3 11.3 88 243-330 95-185 (290)
22 1ogq_A PGIP-2, polygalacturona 99.4 2.3E-13 7.8E-18 124.1 8.5 127 197-329 50-186 (313)
23 1ozn_A Reticulon 4 receptor; N 99.4 5.3E-13 1.8E-17 119.8 10.5 144 197-347 56-205 (285)
24 2z62_A TOLL-like receptor 4, v 99.4 3.9E-13 1.3E-17 120.1 9.4 131 196-332 27-164 (276)
25 3rfs_A Internalin B, repeat mo 99.4 6.9E-13 2.4E-17 118.4 10.9 128 197-332 41-172 (272)
26 2v9t_B SLIT homolog 2 protein 99.4 8.4E-13 2.9E-17 114.1 11.1 121 221-347 33-156 (220)
27 1p9a_G Platelet glycoprotein I 99.4 5.4E-13 1.8E-17 120.3 10.2 143 195-345 29-177 (290)
28 4g8a_A TOLL-like receptor 4; l 99.4 3.4E-13 1.2E-17 133.8 9.5 132 195-332 50-188 (635)
29 2o6s_A Variable lymphocyte rec 99.4 9.4E-13 3.2E-17 112.6 11.0 108 221-332 29-139 (208)
30 3vq2_A TLR4, TOLL-like recepto 99.4 3.8E-13 1.3E-17 133.4 9.7 132 195-332 30-168 (606)
31 3m19_A Variable lymphocyte rec 99.4 7.4E-13 2.5E-17 116.7 10.5 127 200-333 17-147 (251)
32 2ell_A Acidic leucine-rich nuc 99.4 3.6E-13 1.2E-17 111.2 7.8 110 221-334 25-137 (168)
33 1a9n_A U2A', U2A'; complex (nu 99.4 3.5E-13 1.2E-17 112.3 7.6 81 249-330 43-126 (176)
34 2v70_A SLIT-2, SLIT homolog 2 99.4 8.2E-13 2.8E-17 114.2 10.1 138 201-347 15-157 (220)
35 4ezg_A Putative uncharacterize 99.4 1.1E-12 3.7E-17 111.4 10.5 127 196-330 65-194 (197)
36 1xeu_A Internalin C; cellular 99.4 1.7E-12 5.9E-17 115.3 12.2 124 197-332 41-165 (263)
37 2z80_A TOLL-like receptor 2, v 99.4 2.8E-13 9.7E-18 125.4 7.3 143 196-346 51-201 (353)
38 1h6u_A Internalin H; cell adhe 99.4 1.6E-12 5.4E-17 118.3 11.9 126 196-332 62-188 (308)
39 1dce_A Protein (RAB geranylger 99.4 3.7E-13 1.3E-17 132.4 8.2 107 221-334 442-550 (567)
40 1ogq_A PGIP-2, polygalacturona 99.4 4.4E-13 1.5E-17 122.2 7.9 128 196-330 75-210 (313)
41 4g8a_A TOLL-like receptor 4; l 99.4 6.2E-13 2.1E-17 131.9 9.3 122 221-347 53-177 (635)
42 3zyj_A Leucine-rich repeat-con 99.4 1.7E-12 5.9E-17 123.8 11.5 102 196-303 63-169 (440)
43 1h6t_A Internalin B; cell adhe 99.4 2.7E-12 9.1E-17 115.8 11.9 137 196-347 67-204 (291)
44 1h6u_A Internalin H; cell adhe 99.4 3.5E-12 1.2E-16 116.0 12.4 137 196-347 84-221 (308)
45 3zyi_A Leucine-rich repeat-con 99.4 1.6E-12 5.4E-17 124.5 10.5 126 196-327 74-206 (452)
46 2z63_A TOLL-like receptor 4, v 99.4 9E-13 3.1E-17 129.5 9.0 132 195-332 26-164 (570)
47 2xot_A Amphoterin-induced prot 99.4 1.1E-12 3.7E-17 122.1 9.0 132 195-332 37-178 (361)
48 4b8c_D Glucose-repressible alc 99.4 5.5E-13 1.9E-17 135.0 7.3 107 221-332 225-331 (727)
49 2z7x_B TOLL-like receptor 1, v 99.4 1.9E-12 6.3E-17 126.1 10.3 103 221-329 22-127 (520)
50 1h6t_A Internalin B; cell adhe 99.3 5.9E-12 2E-16 113.5 12.4 125 196-331 89-214 (291)
51 2z66_A Variable lymphocyte rec 99.3 1.7E-12 5.7E-17 117.7 8.8 131 196-332 100-238 (306)
52 3o6n_A APL1; leucine-rich repe 99.3 3E-12 1E-16 120.1 10.8 131 196-332 44-180 (390)
53 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 2.5E-12 8.5E-17 126.5 10.5 123 200-331 34-160 (562)
54 3vq2_A TLR4, TOLL-like recepto 99.3 1.6E-12 5.6E-17 128.8 9.3 123 221-348 33-158 (606)
55 2je0_A Acidic leucine-rich nuc 99.3 6.1E-13 2.1E-17 107.5 5.0 122 196-325 16-148 (149)
56 3rgz_A Protein brassinosteroid 99.3 2.1E-12 7.3E-17 131.7 9.9 76 270-347 631-708 (768)
57 2z81_A CD282 antigen, TOLL-lik 99.3 1.1E-12 3.6E-17 128.5 7.3 143 196-346 25-175 (549)
58 1a9n_A U2A', U2A'; complex (nu 99.3 1.1E-12 3.6E-17 109.3 5.8 126 195-328 17-151 (176)
59 3o6n_A APL1; leucine-rich repe 99.3 2.6E-12 9.1E-17 120.4 9.0 122 221-348 46-170 (390)
60 2xwt_C Thyrotropin receptor; s 99.3 3.8E-12 1.3E-16 111.2 9.3 124 197-327 55-189 (239)
61 2o6r_A Variable lymphocyte rec 99.3 6.2E-12 2.1E-16 104.6 10.1 107 221-331 29-138 (177)
62 2xwt_C Thyrotropin receptor; s 99.3 4.4E-12 1.5E-16 110.8 9.5 131 195-332 29-171 (239)
63 1w8a_A SLIT protein; signaling 99.3 3.1E-12 1E-16 108.2 8.1 106 221-330 30-139 (192)
64 4ecn_A Leucine-rich repeat pro 99.3 2.2E-12 7.4E-17 132.5 8.4 127 197-330 448-608 (876)
65 3o53_A Protein LRIM1, AGAP0063 99.3 1.7E-12 5.7E-17 118.5 6.8 127 197-330 120-250 (317)
66 3j0a_A TOLL-like receptor 5; m 99.3 6.3E-12 2.2E-16 129.5 11.8 133 195-332 22-163 (844)
67 3o53_A Protein LRIM1, AGAP0063 99.3 3.4E-12 1.1E-16 116.5 8.6 141 197-347 99-241 (317)
68 3zyj_A Leucine-rich repeat-con 99.3 6.5E-12 2.2E-16 119.8 10.9 130 197-332 136-270 (440)
69 2z66_A Variable lymphocyte rec 99.3 2.2E-12 7.6E-17 116.9 7.3 130 197-332 78-214 (306)
70 3zyi_A Leucine-rich repeat-con 99.3 4.4E-12 1.5E-16 121.4 9.7 88 244-332 192-281 (452)
71 3oja_A Leucine-rich immune mol 99.3 3.3E-12 1.1E-16 123.5 8.8 104 221-329 145-249 (487)
72 2ft3_A Biglycan; proteoglycan, 99.3 5.4E-12 1.9E-16 115.7 9.8 126 197-331 54-186 (332)
73 4ecn_A Leucine-rich repeat pro 99.3 1.2E-11 4.1E-16 127.0 13.4 122 221-348 674-811 (876)
74 4eco_A Uncharacterized protein 99.3 9.6E-12 3.3E-16 124.2 12.3 122 221-348 434-571 (636)
75 3v47_A TOLL-like receptor 5B a 99.3 5.5E-12 1.9E-16 120.5 9.7 133 195-332 28-169 (455)
76 2z80_A TOLL-like receptor 2, v 99.3 4.8E-12 1.6E-16 117.1 9.0 122 221-348 53-179 (353)
77 2id5_A Lingo-1, leucine rich r 99.3 6.6E-12 2.3E-16 120.9 9.9 129 196-330 31-165 (477)
78 1xku_A Decorin; proteoglycan, 99.3 6.1E-12 2.1E-16 115.3 9.2 129 196-332 51-186 (330)
79 4eco_A Uncharacterized protein 99.3 1.7E-12 5.9E-17 129.6 5.9 106 221-331 274-391 (636)
80 1m9s_A Internalin B; cell inva 99.3 7.9E-12 2.7E-16 123.8 10.4 137 196-347 64-201 (605)
81 2wfh_A SLIT homolog 2 protein 99.3 1.3E-11 4.4E-16 104.4 10.3 104 221-329 32-138 (193)
82 1w8a_A SLIT protein; signaling 99.3 3.7E-12 1.3E-16 107.6 6.9 98 249-348 30-131 (192)
83 3rgz_A Protein brassinosteroid 99.3 5.2E-12 1.8E-16 128.8 9.2 143 197-347 394-542 (768)
84 2xot_A Amphoterin-induced prot 99.3 7.2E-12 2.5E-16 116.4 9.2 109 221-333 40-152 (361)
85 3oja_B Anopheles plasmodium-re 99.3 5.7E-12 1.9E-16 125.0 8.8 141 197-345 51-197 (597)
86 2wfh_A SLIT homolog 2 protein 99.3 7.7E-12 2.6E-16 105.8 8.2 98 248-345 31-131 (193)
87 2z62_A TOLL-like receptor 4, v 99.3 1.3E-11 4.4E-16 110.1 10.2 108 197-310 52-165 (276)
88 3oja_B Anopheles plasmodium-re 99.3 9.5E-12 3.3E-16 123.3 10.2 125 197-329 75-204 (597)
89 1m9s_A Internalin B; cell inva 99.3 1.4E-11 4.9E-16 122.0 11.0 126 196-332 86-212 (605)
90 4fmz_A Internalin; leucine ric 99.3 2.7E-11 9.2E-16 111.5 12.2 124 197-330 66-190 (347)
91 2z81_A CD282 antigen, TOLL-lik 99.3 1.9E-11 6.3E-16 119.7 11.7 142 197-347 334-501 (549)
92 1xku_A Decorin; proteoglycan, 99.3 1.9E-11 6.4E-16 112.0 10.4 144 197-347 171-323 (330)
93 2id5_A Lingo-1, leucine rich r 99.3 1.1E-11 3.9E-16 119.2 9.4 108 221-332 33-143 (477)
94 3oja_A Leucine-rich immune mol 99.2 5.6E-12 1.9E-16 122.0 6.6 141 197-344 99-241 (487)
95 3v47_A TOLL-like receptor 5B a 99.2 1.7E-11 5.9E-16 117.0 9.9 107 221-331 276-385 (455)
96 1ziw_A TOLL-like receptor 3; i 99.2 1.2E-11 4.1E-16 124.3 9.2 132 195-332 23-160 (680)
97 1ziw_A TOLL-like receptor 3; i 99.2 1.1E-11 3.9E-16 124.4 9.0 130 197-332 49-186 (680)
98 3t6q_A CD180 antigen; protein- 99.2 9.4E-12 3.2E-16 123.3 8.3 132 195-332 31-168 (606)
99 1dce_A Protein (RAB geranylger 99.2 1.2E-11 4.1E-16 121.7 8.8 97 249-348 442-538 (567)
100 2z63_A TOLL-like receptor 4, v 99.2 1.8E-11 6.2E-16 120.1 9.5 123 221-348 29-154 (570)
101 2z7x_B TOLL-like receptor 1, v 99.2 6E-11 2E-15 115.4 12.8 144 196-347 323-472 (520)
102 4glp_A Monocyte differentiatio 99.2 2E-11 7E-16 110.9 8.7 132 196-333 116-267 (310)
103 3j0a_A TOLL-like receptor 5; m 99.2 2.6E-11 9E-16 124.9 10.5 130 210-348 18-153 (844)
104 2ft3_A Biglycan; proteoglycan, 99.2 5.8E-11 2E-15 108.8 11.7 103 221-329 55-159 (332)
105 2r9u_A Variable lymphocyte rec 99.2 2.2E-11 7.5E-16 101.3 8.0 81 248-328 33-116 (174)
106 1wwl_A Monocyte differentiatio 99.2 2.7E-11 9.2E-16 110.2 9.2 86 245-332 198-289 (312)
107 4glp_A Monocyte differentiatio 99.2 1.7E-11 5.9E-16 111.3 7.8 143 196-345 144-299 (310)
108 1wwl_A Monocyte differentiatio 99.2 3.6E-11 1.2E-15 109.3 9.0 106 221-330 150-266 (312)
109 1xeu_A Internalin C; cellular 99.2 4.4E-11 1.5E-15 106.2 9.2 105 216-332 39-143 (263)
110 3g39_A Variable lymphocyte rec 99.2 3.7E-11 1.3E-15 99.4 7.7 81 248-328 30-113 (170)
111 3t6q_A CD180 antigen; protein- 99.2 3.8E-11 1.3E-15 118.9 9.0 108 221-332 34-144 (606)
112 1o6v_A Internalin A; bacterial 99.2 1.2E-10 4.2E-15 111.7 12.3 81 244-327 261-341 (466)
113 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 1.4E-10 4.9E-15 113.9 12.5 144 196-347 352-501 (562)
114 2o6r_A Variable lymphocyte rec 99.2 9.4E-11 3.2E-15 97.4 9.2 87 247-333 27-116 (177)
115 3bz5_A Internalin-J, INLJ; leu 99.2 1.3E-10 4.5E-15 111.4 11.4 120 197-331 64-184 (457)
116 4fmz_A Internalin; leucine ric 99.2 1.9E-10 6.4E-15 105.9 12.1 138 197-345 199-338 (347)
117 3g39_A Variable lymphocyte rec 99.2 8.8E-11 3E-15 97.1 8.8 95 249-345 10-107 (170)
118 3cvr_A Invasion plasmid antige 99.2 2.6E-11 8.7E-16 119.1 6.2 116 198-331 121-244 (571)
119 2r9u_A Variable lymphocyte rec 99.1 1.1E-10 3.8E-15 96.9 8.9 93 251-347 15-109 (174)
120 1ds9_A Outer arm dynein; leuci 99.1 1.6E-12 5.6E-17 110.3 -2.4 125 198-331 24-154 (198)
121 1o6v_A Internalin A; bacterial 99.1 2.8E-10 9.5E-15 109.3 12.2 125 197-332 243-368 (466)
122 1ds9_A Outer arm dynein; leuci 99.1 4.6E-13 1.6E-17 113.8 -7.0 85 243-329 43-127 (198)
123 3g06_A SSPH2 (leucine-rich rep 99.1 2.1E-10 7.3E-15 113.8 11.0 123 196-336 60-200 (622)
124 3bz5_A Internalin-J, INLJ; leu 99.1 2.5E-10 8.7E-15 109.4 9.9 121 196-331 41-162 (457)
125 2ast_B S-phase kinase-associat 99.1 6.1E-11 2.1E-15 108.6 5.1 127 197-328 118-258 (336)
126 2ast_B S-phase kinase-associat 99.1 3.7E-11 1.3E-15 110.1 3.3 127 196-328 92-233 (336)
127 3cvr_A Invasion plasmid antige 99.1 4.5E-10 1.5E-14 110.2 10.0 127 197-347 100-234 (571)
128 3g06_A SSPH2 (leucine-rich rep 99.0 7.6E-10 2.6E-14 109.8 11.4 116 195-328 79-212 (622)
129 1jl5_A Outer protein YOPM; leu 99.0 6.6E-10 2.3E-14 106.4 10.2 97 221-330 132-228 (454)
130 4ay9_X Follicle-stimulating ho 99.0 1.3E-09 4.5E-14 100.6 10.4 95 238-332 94-217 (350)
131 1jl5_A Outer protein YOPM; leu 99.0 1.6E-09 5.6E-14 103.7 10.4 120 197-331 131-251 (454)
132 2ca6_A RAN GTPase-activating p 99.0 1.2E-10 4E-15 109.1 1.9 86 243-328 211-314 (386)
133 2ifg_A High affinity nerve gro 98.9 1.4E-09 4.9E-14 100.0 8.1 86 244-329 27-115 (347)
134 4ay9_X Follicle-stimulating ho 98.9 4.2E-09 1.5E-13 97.2 9.5 132 196-332 103-238 (350)
135 2ifg_A High affinity nerve gro 98.9 5.3E-09 1.8E-13 96.2 8.7 81 252-333 12-96 (347)
136 2ca6_A RAN GTPase-activating p 98.8 1.1E-09 3.8E-14 102.4 3.4 130 197-331 122-288 (386)
137 3goz_A Leucine-rich repeat-con 98.7 4.5E-09 1.5E-13 97.4 4.1 108 221-328 139-264 (362)
138 3goz_A Leucine-rich repeat-con 98.7 6.6E-09 2.2E-13 96.3 3.6 110 221-330 110-238 (362)
139 1z7x_W Ribonuclease inhibitor; 98.6 1E-08 3.5E-13 97.8 1.2 128 197-329 28-182 (461)
140 1z7x_W Ribonuclease inhibitor; 98.5 1.3E-07 4.5E-12 90.0 6.3 135 197-331 56-213 (461)
141 3un9_A NLR family member X1; l 98.4 3.6E-08 1.2E-12 91.8 1.4 132 197-330 101-252 (372)
142 3un9_A NLR family member X1; l 98.4 7E-08 2.4E-12 89.8 1.8 106 221-329 102-223 (372)
143 3ogk_B Coronatine-insensitive 98.3 3.2E-07 1.1E-11 90.2 5.0 108 221-328 165-304 (592)
144 3ogk_B Coronatine-insensitive 98.3 2.3E-07 8E-12 91.2 3.1 129 197-327 164-328 (592)
145 1io0_A Tropomodulin; LRR prote 98.3 3.6E-07 1.2E-11 76.3 3.4 109 221-329 37-163 (185)
146 2p1m_B Transport inhibitor res 98.1 7.6E-07 2.6E-11 87.5 2.6 127 197-327 105-245 (594)
147 3rw6_A Nuclear RNA export fact 98.1 1.9E-06 6.4E-11 76.1 4.5 79 245-324 167-258 (267)
148 3sb4_A Hypothetical leucine ri 98.1 4.1E-06 1.4E-10 76.3 6.9 100 246-349 224-327 (329)
149 2ra8_A Uncharacterized protein 98.0 1.3E-05 4.5E-10 74.0 8.8 128 196-329 171-319 (362)
150 3rw6_A Nuclear RNA export fact 98.0 9.5E-07 3.2E-11 78.0 0.0 87 244-331 137-234 (267)
151 2p1m_B Transport inhibitor res 97.9 9.6E-07 3.3E-11 86.8 -0.7 37 291-327 286-324 (594)
152 3sb4_A Hypothetical leucine ri 97.9 1.4E-05 4.8E-10 72.7 6.7 100 217-324 225-328 (329)
153 1io0_A Tropomodulin; LRR prote 97.9 9.5E-06 3.3E-10 67.6 5.1 93 238-330 26-136 (185)
154 3e4g_A ATP synthase subunit S, 97.8 3.7E-05 1.3E-09 63.2 6.4 80 249-328 62-150 (176)
155 3e4g_A ATP synthase subunit S, 97.3 0.00027 9.3E-09 58.0 5.4 84 221-309 62-155 (176)
156 2ra8_A Uncharacterized protein 97.2 0.0016 5.4E-08 60.0 9.5 83 247-329 192-291 (362)
157 4fdw_A Leucine rich hypothetic 96.8 0.0046 1.6E-07 57.7 9.1 91 238-331 261-359 (401)
158 4fdw_A Leucine rich hypothetic 96.7 0.0035 1.2E-07 58.5 7.8 102 221-328 158-282 (401)
159 3rfe_A Platelet glycoprotein I 96.5 0.0037 1.3E-07 48.5 5.6 53 251-305 11-66 (130)
160 3rfe_A Platelet glycoprotein I 96.1 0.0069 2.3E-07 47.0 5.1 54 274-329 11-67 (130)
161 2qen_A Walker-type ATPase; unk 95.4 0.15 5E-06 45.8 11.7 144 18-176 163-348 (350)
162 1pgv_A TMD-1, tropomodulin TMD 95.3 0.01 3.5E-07 49.5 3.2 107 221-327 42-167 (197)
163 1pgv_A TMD-1, tropomodulin TMD 94.8 0.034 1.2E-06 46.3 5.1 89 239-327 32-136 (197)
164 1w5s_A Origin recognition comp 94.4 0.65 2.2E-05 42.6 13.5 133 19-156 179-372 (412)
165 2fna_A Conserved hypothetical 94.1 0.43 1.5E-05 42.7 11.4 140 18-175 169-355 (357)
166 4fs7_A Uncharacterized protein 93.5 0.24 8.2E-06 45.6 8.6 84 241-327 290-376 (394)
167 4gt6_A Cell surface protein; l 93.5 0.13 4.6E-06 47.3 6.8 99 221-327 266-367 (394)
168 4h09_A Hypothetical leucine ri 92.2 0.5 1.7E-05 43.0 8.7 99 221-326 241-342 (379)
169 4gt6_A Cell surface protein; l 91.7 0.47 1.6E-05 43.6 8.0 85 241-327 258-344 (394)
170 4h09_A Hypothetical leucine ri 91.5 0.54 1.8E-05 42.8 8.1 87 239-327 231-320 (379)
171 4fs7_A Uncharacterized protein 90.9 0.5 1.7E-05 43.4 7.3 94 221-322 298-393 (394)
172 1njg_A DNA polymerase III subu 81.0 2.1 7.1E-05 35.4 5.3 56 2-66 139-195 (250)
173 1hqc_A RUVB; extended AAA-ATPa 61.0 6.4 0.00022 34.5 3.8 129 19-154 138-324 (324)
174 2v1u_A Cell division control p 59.3 93 0.0032 27.3 14.3 135 17-156 165-352 (387)
175 1fnn_A CDC6P, cell division co 58.2 98 0.0034 27.3 13.5 89 93-182 283-386 (389)
176 2qby_B CDC6 homolog 3, cell di 57.8 95 0.0032 27.4 11.3 134 18-157 163-341 (384)
177 2gkw_B Tumor necrosis factor r 45.2 13 0.00046 18.9 1.8 18 12-29 3-20 (26)
178 2chg_A Replication factor C sm 36.6 41 0.0014 26.8 4.7 54 4-66 117-171 (226)
179 2qby_A CDC6 homolog 1, cell di 27.8 3E+02 0.01 23.8 13.4 134 18-156 162-349 (386)
180 2vda_B Maltoporin; sugar trans 20.7 37 0.0013 17.4 0.9 14 70-83 9-22 (28)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.94 E-value=1.9e-27 Score=233.88 Aligned_cols=151 Identities=21% Similarity=0.301 Sum_probs=124.7
Q ss_pred CCcEEEEEeCChHHHhhcccccCCCCCCCceEEcCCCCCChhhhhhccc---ccc-----------------CCchhHHH
Q 042413 18 NGSRVLITVTDPELLLSLEMENGEKIRPDSVLNGGPMIRLKHESWQFFI---LHY-----------------GSMPLENY 77 (350)
Q Consensus 18 ~GSrIivTTR~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~s~~Lf~---f~~-----------------~GlPLai~ 77 (350)
+|||||||||++.|+..++... .+|++++|+ +++||+||+ |+. +|+||||+
T Consensus 264 ~gs~ilvTTR~~~v~~~~~~~~-------~~~~l~~L~--~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~ 334 (549)
T 2a5y_B 264 LRLRCLVTTRDVEISNAASQTC-------EFIEVTSLE--IDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLM 334 (549)
T ss_dssp TTCEEEEEESBGGGGGGCCSCE-------EEEECCCCC--HHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCEEEEEcCCHHHHHHcCCCC-------eEEECCCCC--HHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHH
Confidence 7999999999999999886321 689999999 999999999 543 99999999
Q ss_pred HHHHHHH-HHHHhh--hc------------------cCCCChhhHHHHh-----------hhhcCCCCceeeHHHHHHHH
Q 042413 78 FLGEAFL-TVWRQI--YT------------------VMELPFHLKVCCI-----------YLCVFPPSIEISTRQLYQLW 125 (350)
Q Consensus 78 ~lg~~L~-~~W~~~--l~------------------y~~L~~~lk~cfl-----------~~a~Fp~~~~i~~~~li~~w 125 (350)
++|+.|+ ..|+.+ +. |++||+++|.||+ |||+||+++.|+ +++|
T Consensus 335 ~~g~~l~~~~w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w 410 (549)
T 2a5y_B 335 MFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLW 410 (549)
T ss_dssp HHHTTCCSSSHHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHH
T ss_pred HHHHHhccchHHHHHHhHHHhhcccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeee
Confidence 9999877 333322 11 9999999999999 999999999998 8999
Q ss_pred HHc--CCCCCC--C---hhHHHHHHHHHHHcCcceeeecCCCCCeeEEEeCHHHHHHHHHHhhhcCc
Q 042413 126 VAE--GFIPYN--G---EETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGF 185 (350)
Q Consensus 126 ~a~--g~i~~~--~---e~~~~~~~~~Lv~r~li~~~~~~~~g~~~~~~mhdli~dl~~~i~~~~~~ 185 (350)
+|+ ||+... + ++.++ |+++|+++||++....+ ....|+|||+||++|+.++.++++
T Consensus 411 ~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 411 SCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred eeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 999 999765 2 77777 99999999999987643 346799999999999998877653
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.87 E-value=1.4e-22 Score=205.57 Aligned_cols=149 Identities=15% Similarity=0.222 Sum_probs=126.2
Q ss_pred CChhhHHHHHhhcCCCCCCcEEEEEeCChHHHhhcccccCCCCCCCceEEcC------CCCCChhhhhhccc--ccc---
Q 042413 1 MTFQQWDNLEQVLPDNQNGSRVLITVTDPELLLSLEMENGEKIRPDSVLNGG------PMIRLKHESWQFFI--LHY--- 69 (350)
Q Consensus 1 ~~~~~w~~l~~~l~~~~~GSrIivTTR~~~v~~~~~~~~~~~~~~~~~~~l~------~L~~~~~~s~~Lf~--f~~--- 69 (350)
|+.+.|+.+ + +|||||||||++.++..+... .+|+++ +|+ ++|||+||+ |+.
T Consensus 254 wd~eqLe~f----~---pGSRILVTTRd~~Va~~l~g~--------~vy~LeL~d~dL~LS--~eEA~eLF~~~~g~~~e 316 (1221)
T 1vt4_I 254 QNAKAWNAF----N---LSCKILLTTRFKQVTDFLSAA--------TTTHISLDHHSMTLT--PDEVKSLLLKYLDCRPQ 316 (1221)
T ss_dssp CCHHHHHHH----H---SSCCEEEECSCSHHHHHHHHH--------SSCEEEECSSSSCCC--HHHHHHHHHHHHCCCTT
T ss_pred ChHHHHHhh----C---CCeEEEEeccChHHHHhcCCC--------eEEEecCccccCCcC--HHHHHHHHHHHcCCCHH
Confidence 566667654 2 799999999999999866554 578888 999 999999999 543
Q ss_pred -------CCchhHHHHHHHHHH------HHHHhhhc----------cCCCChhh-HHHHhhhhcCCCCceeeHHHHHHHH
Q 042413 70 -------GSMPLENYFLGEAFL------TVWRQIYT----------VMELPFHL-KVCCIYLCVFPPSIEISTRQLYQLW 125 (350)
Q Consensus 70 -------~GlPLai~~lg~~L~------~~W~~~l~----------y~~L~~~l-k~cfl~~a~Fp~~~~i~~~~li~~w 125 (350)
+|+||||+++|+.|+ ++|+..-. |+.||+++ |+||+|||+||+++.|+++.++.+|
T Consensus 317 eL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW 396 (1221)
T 1vt4_I 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396 (1221)
T ss_dssp THHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHh
Confidence 899999999999998 57875422 99999999 9999999999999999999999999
Q ss_pred HHcCCCCCCChhHHHHHHHHHHHcCcceeeecCCCCCeeEEEeCHHHHHHHH
Q 042413 126 VAEGFIPYNGEETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLA 177 (350)
Q Consensus 126 ~a~g~i~~~~e~~~~~~~~~Lv~r~li~~~~~~~~g~~~~~~mhdli~dl~~ 177 (350)
+++| ++.++.++++|+++||++.. +....|+|||++++++.
T Consensus 397 ~aeG------eedAe~~L~eLvdRSLLq~d-----~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 397 FDVI------KSDVMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELKV 437 (1221)
T ss_dssp CSSC------SHHHHHHHHHHHTSSSSSBC-----SSSSEEBCCCHHHHHHH
T ss_pred cCCC------HHHHHHHHHHHHhhCCEEEe-----CCCCEEEehHHHHHHhc
Confidence 9987 34688999999999999873 12257999999999663
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.87 E-value=3.9e-22 Score=213.15 Aligned_cols=147 Identities=17% Similarity=0.265 Sum_probs=126.9
Q ss_pred CCCcEEEEEeCChHHHhhc-ccccCCCCCCCceEEcCC-CCCChhhhhhccc-ccc-----------------CCchhHH
Q 042413 17 QNGSRVLITVTDPELLLSL-EMENGEKIRPDSVLNGGP-MIRLKHESWQFFI-LHY-----------------GSMPLEN 76 (350)
Q Consensus 17 ~~GSrIivTTR~~~v~~~~-~~~~~~~~~~~~~~~l~~-L~~~~~~s~~Lf~-f~~-----------------~GlPLai 76 (350)
++|||||||||++.|+..+ +.. ..+++++ |+ ++|||+||+ +.. +|+||||
T Consensus 255 ~~~~~ilvTtR~~~~~~~~~~~~--------~~~~~~~~l~--~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal 324 (1249)
T 3sfz_A 255 DNQCQILLTTRDKSVTDSVMGPK--------HVVPVESGLG--REKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVV 324 (1249)
T ss_dssp CSSCEEEEEESSTTTTTTCCSCB--------CCEECCSSCC--HHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHH
T ss_pred cCCCEEEEEcCCHHHHHhhcCCc--------eEEEecCCCC--HHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHH
Confidence 6799999999999999654 443 8899996 99 999999999 211 9999999
Q ss_pred HHHHHHHH---HHHHhhhc----------------------------cCCCChhhHHHHhhhhcCCCCceeeHHHHHHHH
Q 042413 77 YFLGEAFL---TVWRQIYT----------------------------VMELPFHLKVCCIYLCVFPPSIEISTRQLYQLW 125 (350)
Q Consensus 77 ~~lg~~L~---~~W~~~l~----------------------------y~~L~~~lk~cfl~~a~Fp~~~~i~~~~li~~w 125 (350)
+++|+.|+ ..|+..++ |+.||+++|.||+|||+||+++.|+++.++.+|
T Consensus 325 ~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~ 404 (1249)
T 3sfz_A 325 SLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW 404 (1249)
T ss_dssp HHHHHHHHHSSSCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHH
T ss_pred HHHHHHhhcChhHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHh
Confidence 99999998 45554433 999999999999999999999999999999999
Q ss_pred HHcCCCCCCChhHHHHHHHHHHHcCcceeeecCCCCCeeEEEeCHHHHHHHHHHhhhc
Q 042413 126 VAEGFIPYNGEETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEKT 183 (350)
Q Consensus 126 ~a~g~i~~~~e~~~~~~~~~Lv~r~li~~~~~~~~g~~~~~~mhdli~dl~~~i~~~~ 183 (350)
.++ ++.++.++++|+++||++... .++...|+|||++|++++..+.++
T Consensus 405 ~~~-------~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 405 DLE-------TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp TCC-------HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred CCC-------HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 776 678999999999999999765 344567999999999999987654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.77 E-value=2.3e-18 Score=170.82 Aligned_cols=143 Identities=17% Similarity=0.233 Sum_probs=120.3
Q ss_pred CCCcEEEEEeCChHHHhhcccccCCCCCCCceEEc---CCCCCChhhhhhccc---ccc---------------CCchhH
Q 042413 17 QNGSRVLITVTDPELLLSLEMENGEKIRPDSVLNG---GPMIRLKHESWQFFI---LHY---------------GSMPLE 75 (350)
Q Consensus 17 ~~GSrIivTTR~~~v~~~~~~~~~~~~~~~~~~~l---~~L~~~~~~s~~Lf~---f~~---------------~GlPLa 75 (350)
++||+||||||++.++..+.. ..|++ ++|+ ++|+++||. +.. +|+|||
T Consensus 255 ~~~~~ilvTsR~~~~~~~~~~---------~~~~v~~l~~L~--~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 323 (591)
T 1z6t_A 255 DSQCQILLTTRDKSVTDSVMG---------PKYVVPVESSLG--KEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLV 323 (591)
T ss_dssp CSSCEEEEEESCGGGGTTCCS---------CEEEEECCSSCC--HHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHH
T ss_pred cCCCeEEEECCCcHHHHhcCC---------CceEeecCCCCC--HHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHH
Confidence 569999999999999876542 45666 5899 999999998 331 999999
Q ss_pred HHHHHHHHH---HHHHhhhc----------------------------cCCCChhhHHHHhhhhcCCCCceeeHHHHHHH
Q 042413 76 NYFLGEAFL---TVWRQIYT----------------------------VMELPFHLKVCCIYLCVFPPSIEISTRQLYQL 124 (350)
Q Consensus 76 i~~lg~~L~---~~W~~~l~----------------------------y~~L~~~lk~cfl~~a~Fp~~~~i~~~~li~~ 124 (350)
|+.+|+.|+ ..|+.+++ |+.||++.|.||++||+||+++.|+.+.++.+
T Consensus 324 l~~~a~~l~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l 403 (591)
T 1z6t_A 324 VSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCIL 403 (591)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHH
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHH
Confidence 999999998 45764432 89999999999999999999999999999999
Q ss_pred HHHcCCCCCCChhHHHHHHHHHHHcCcceeeecCCCCCeeEEEeCHHHHHHHHHHh
Q 042413 125 WVAEGFIPYNGEETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVA 180 (350)
Q Consensus 125 w~a~g~i~~~~e~~~~~~~~~Lv~r~li~~~~~~~~g~~~~~~mhdli~dl~~~i~ 180 (350)
|.++ .+.++.++++|+++||++.... +....|+||++++++++...
T Consensus 404 ~~~~-------~~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 404 WDME-------TEEVEDILQEFVNKSLLFCDRN---GKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HTCC-------HHHHHHHHHHHHHTTSSEEEEE---TTEEEEECCHHHHHHHHHHT
T ss_pred hccC-------HHHHHHHHHHHHhCcCeEEecC---CCccEEEEcHHHHHHHHhhh
Confidence 9765 4568899999999999986542 34468999999999998873
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.55 E-value=9.4e-15 Score=134.27 Aligned_cols=85 Identities=16% Similarity=0.157 Sum_probs=35.5
Q ss_pred hcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCc-ccchhhhcCcCCCEEEccCC-cCcccchhccccccCcE
Q 042413 244 FKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLK-CLHSLLCTLLNLETLEMPSS-YIDQSPHDIWMMQKLMH 321 (350)
Q Consensus 244 ~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~-~lP~~i~~l~~L~~L~l~~~-~l~~lP~~i~~L~~L~~ 321 (350)
+.++++|+.|+|++|.++.+|..++.+++|++|++++|.+. .+|..++.+++|++|++++| .++.+|..++++++|++
T Consensus 202 l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 281 (328)
T 4fcg_A 202 IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281 (328)
T ss_dssp GGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCE
T ss_pred hcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCE
Confidence 33344444444444444444434444444444444443322 33444444444444444443 33344444444444444
Q ss_pred EEeeccC
Q 042413 322 LYFYCIS 328 (350)
Q Consensus 322 L~l~~~~ 328 (350)
|++++|.
T Consensus 282 L~L~~n~ 288 (328)
T 4fcg_A 282 LDLRGCV 288 (328)
T ss_dssp EECTTCT
T ss_pred EeCCCCC
Confidence 4444443
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.54 E-value=1.7e-14 Score=132.58 Aligned_cols=143 Identities=16% Similarity=0.162 Sum_probs=82.9
Q ss_pred CCeeEEEEecCcc-chhh-ccCCCCCCeeEEEEecCCCCCCCccchHHH---------hcCCceeeEEEccCCCCCcCcc
Q 042413 197 ANVKRCFILKDLI-DFFS-SLKHSDMYLQSFLNHSSKNNHLNSKDYENF---------FKRFKYLRVLNLGSAVLDQYPS 265 (350)
Q Consensus 197 ~~~r~L~l~~~~~-~~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~---------~~~l~~L~~L~L~~~~l~~lp~ 265 (350)
.+++.|.+..+.. .++. ...++ +|+.|.+.++.. ....+.. +..+++|++|+|++|.++.+|.
T Consensus 127 ~~L~~L~Ls~n~l~~lp~~l~~l~--~L~~L~L~~n~~----~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~ 200 (328)
T 4fcg_A 127 AGLETLTLARNPLRALPASIASLN--RLRELSIRACPE----LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA 200 (328)
T ss_dssp TTCSEEEEESCCCCCCCGGGGGCT--TCCEEEEEEETT----CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCG
T ss_pred CCCCEEECCCCccccCcHHHhcCc--CCCEEECCCCCC----ccccChhHhhccchhhhccCCCCCEEECcCCCcCcchH
Confidence 4455555555554 2222 22334 666666655443 1112222 2236666666666666666666
Q ss_pred ccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCC-cCcccchhccccccCcEEEeeccCCCCCCCCccccccccc
Q 042413 266 GLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSS-YIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIF 344 (350)
Q Consensus 266 ~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~-~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 344 (350)
.++.+++|++|++++|.+..+|+.++.+++|++|++++| ..+.+|..++.+++|++|++++|...+. .|..+.++++
T Consensus 201 ~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~--~p~~~~~l~~ 278 (328)
T 4fcg_A 201 SIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT--LPLDIHRLTQ 278 (328)
T ss_dssp GGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB--CCTTGGGCTT
T ss_pred hhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh--cchhhhcCCC
Confidence 666777777777777777667666777777777777776 5556666677777777777766654443 3444444444
Q ss_pred ccc
Q 042413 345 ISA 347 (350)
Q Consensus 345 L~~ 347 (350)
|+.
T Consensus 279 L~~ 281 (328)
T 4fcg_A 279 LEK 281 (328)
T ss_dssp CCE
T ss_pred CCE
Confidence 443
No 7
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=4.1e-14 Score=124.80 Aligned_cols=132 Identities=17% Similarity=0.106 Sum_probs=106.0
Q ss_pred CCCCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCC
Q 042413 195 SLANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENL 270 (350)
Q Consensus 195 ~~~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l 270 (350)
.+..++.|.+..+.. ..+. ...++ +|+.|.+.++.. ....+..|..+++|++|+|++|.++.+| ..++.+
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 106 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLT--KLTWLNLDYNQL----QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL 106 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCT--TCCEEECTTSCC----CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcc--cCCEEECCCCcC----CccCHhHhccCCcCCEEECCCCcccccChhHhccc
Confidence 346788888888877 2222 33455 999999988876 4456667888999999999999988776 456889
Q ss_pred CCCCeeeeeCCCCcccchh-hhcCcCCCEEEccCCcCcccch-hccccccCcEEEeeccCCCCC
Q 042413 271 YLLKYLKLNIPSLKCLHSL-LCTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 271 ~~L~~L~l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~ 332 (350)
++|++|++++|.++.+|+. ++.+++|++|++++|.+..+|. .++.+++|++|++++|.....
T Consensus 107 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 9999999999999988776 4789999999999998888887 588899999999998877655
No 8
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=5.1e-14 Score=122.59 Aligned_cols=128 Identities=21% Similarity=0.228 Sum_probs=80.7
Q ss_pred CCCeeEEEEecCcc-ch-hh-ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccc-cCCCC
Q 042413 196 LANVKRCFILKDLI-DF-FS-SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSG-LENLY 271 (350)
Q Consensus 196 ~~~~r~L~l~~~~~-~~-~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~ 271 (350)
+..+++|.+..+.+ .. +. ...++ +|+.|.+.++.. ..+.+..|..+++|++|+|++|.++.+|.. +..++
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~L~~N~l----~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 112 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLI--NLKELYLGSNQL----GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLV 112 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCT--TCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCCCEEEcCCCccCccCHHHhhCcc--CCcEEECCCCCC----CCcChhhcccCCCcCEEECCCCcCCccChhHhCcch
Confidence 35666677666665 22 11 22344 677777766665 334445566677777777777776666543 45677
Q ss_pred CCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccch-hccccccCcEEEeeccCC
Q 042413 272 LLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFYCISP 329 (350)
Q Consensus 272 ~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~ 329 (350)
+|++|++++|.++.+|..+..+++|++|++++|.+..+|. .+..+++|+.|++++|..
T Consensus 113 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 113 HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred hhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 7777777777777777767777777777777776666664 456666777777766643
No 9
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.50 E-value=8.8e-14 Score=124.24 Aligned_cols=131 Identities=21% Similarity=0.254 Sum_probs=104.7
Q ss_pred CCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccc-cCCCCCC
Q 042413 196 LANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSG-LENLYLL 273 (350)
Q Consensus 196 ~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L 273 (350)
...+++|.+..+.. ..+....++ +|+.|.+.++.. ....+..+..+++|++|++++|.++.+|.. ++.+++|
T Consensus 62 l~~L~~L~l~~n~l~~~~~l~~l~--~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 135 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDISALKELT--NLTYLILTGNQL----QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135 (272)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTCT--TCCEEECTTSCC----CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCCcEEECCCCCCCCchhhcCCC--CCCEEECCCCcc----CccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCC
Confidence 46788888888777 444455666 899999988876 455666678889999999999998877654 6888999
Q ss_pred CeeeeeCCCCcccchh-hhcCcCCCEEEccCCcCcccchh-ccccccCcEEEeeccCCCCC
Q 042413 274 KYLKLNIPSLKCLHSL-LCTLLNLETLEMPSSYIDQSPHD-IWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 274 ~~L~l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~ 332 (350)
++|++++|.++.+|+. ++.+++|++|++++|.+..+|.. ++.+++|++|++++|.....
T Consensus 136 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 136 TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 9999999998888765 47889999999999988887764 57889999999988876655
No 10
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=6.8e-14 Score=121.05 Aligned_cols=128 Identities=16% Similarity=0.164 Sum_probs=89.6
Q ss_pred CCCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccc-cCCCC
Q 042413 196 LANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSG-LENLY 271 (350)
Q Consensus 196 ~~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~ 271 (350)
+..++.|.+..+.+ .++. ...++ +|+.|.+.++.. ....+..|..+++|++|+|++|.++.+|.. +..++
T Consensus 31 ~~~l~~L~l~~n~i~~i~~~~~~~l~--~L~~L~Ls~N~i----~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~ 104 (220)
T 2v9t_B 31 PETITEIRLEQNTIKVIPPGAFSPYK--KLRRIDLSNNQI----SELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF 104 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCT--TCCEEECCSSCC----CEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CcCCCEEECCCCcCCCcCHhHhhCCC--CCCEEECCCCcC----CCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCC
Confidence 35677777777766 2222 22444 777887777776 445566777778888888888887777754 46677
Q ss_pred CCCeeeeeCCCCccc-chhhhcCcCCCEEEccCCcCcccch-hccccccCcEEEeeccCC
Q 042413 272 LLKYLKLNIPSLKCL-HSLLCTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFYCISP 329 (350)
Q Consensus 272 ~L~~L~l~~~~l~~l-P~~i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~ 329 (350)
+|++|+|++|.++.+ |..+..+++|++|++++|.+..+|. .+..+++|++|++++|..
T Consensus 105 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 888888888877766 4556777788888888887777765 467777788888877643
No 11
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=1.9e-13 Score=116.04 Aligned_cols=139 Identities=11% Similarity=0.088 Sum_probs=112.9
Q ss_pred CCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCc-CccccCCCCCCC
Q 042413 197 ANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQ-YPSGLENLYLLK 274 (350)
Q Consensus 197 ~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~i~~l~~L~ 274 (350)
..++++.+..+.+ .++....++ +|++|.+.++... .+ ..+..+++|+.|++++|.++. .|..++.+++|+
T Consensus 44 ~~L~~L~l~~n~i~~l~~l~~l~--~L~~L~l~~n~~~-----~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTGIEYAH--NIKDLTINNIHAT-----NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HTCCEEEEESSCCSCCTTGGGCT--TCSEEEEESCCCS-----CC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred CCccEEeccCCCccChHHHhcCC--CCCEEEccCCCCC-----cc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 5688999998887 555555677 9999999998652 12 468889999999999999984 788899999999
Q ss_pred eeeeeCCCCc-ccchhhhcCcCCCEEEccCCc-CcccchhccccccCcEEEeeccCCCCCCCCcccccccccc
Q 042413 275 YLKLNIPSLK-CLHSLLCTLLNLETLEMPSSY-IDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFI 345 (350)
Q Consensus 275 ~L~l~~~~l~-~lP~~i~~l~~L~~L~l~~~~-l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 345 (350)
+|++++|.++ ..|..++.+++|++|++++|. +..+| .+..+++|++|++++|...... .+..+++|+.|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L 186 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQL 186 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEE
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEE
Confidence 9999999998 478889999999999999996 99998 6999999999999998765542 23334444433
No 12
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.47 E-value=2.7e-13 Score=120.87 Aligned_cols=130 Identities=16% Similarity=0.186 Sum_probs=82.4
Q ss_pred CCeeEEEEecCcc-chhhc--cCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCCC
Q 042413 197 ANVKRCFILKDLI-DFFSS--LKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYL 272 (350)
Q Consensus 197 ~~~r~L~l~~~~~-~~~~~--~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~ 272 (350)
.++++|.+..+.. .++.. ..++ +|++|.+.++.. ....+..|..+++|++|++++|.++.+| ..++.+++
T Consensus 61 ~~L~~L~l~~n~l~~i~~~~~~~l~--~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 134 (270)
T 2o6q_A 61 TKLRLLYLNDNKLQTLPAGIFKELK--NLETLWVTDNKL----QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK 134 (270)
T ss_dssp TTCCEEECCSSCCSCCCTTTTSSCT--TCCEEECCSSCC----CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCEEECCCCccCeeChhhhcCCC--CCCEEECCCCcC----CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC
Confidence 4556666655554 22221 2234 666666666655 3344455666777777777777776555 34567777
Q ss_pred CCeeeeeCCCCcccchh-hhcCcCCCEEEccCCcCcccch-hccccccCcEEEeeccCCCCC
Q 042413 273 LKYLKLNIPSLKCLHSL-LCTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 273 L~~L~l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~ 332 (350)
|++|++++|.++.+|.. ++.+++|++|++++|.+..+|. .+..+++|++|++++|.....
T Consensus 135 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 77777777777766654 5677777777777777776665 366777777777777755544
No 13
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=1.1e-13 Score=140.06 Aligned_cols=107 Identities=20% Similarity=0.163 Sum_probs=75.6
Q ss_pred chHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhcccccc
Q 042413 239 DYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQK 318 (350)
Q Consensus 239 ~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~ 318 (350)
.++..+..++.|+.|+|++|.+..+|..+..+++|++|+|++|.|+.+|.+++.|.+|++|+|++|.+..+|.+|+.|++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 45566777888888888888887888777788888888888888888888888888888888888877788888888888
Q ss_pred CcEEEeeccCCCCCCCCccccccccccccc
Q 042413 319 LMHLYFYCISPCTSKNYSSSLKNLIFISAL 348 (350)
Q Consensus 319 L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L 348 (350)
|++|++++|.+.. +|..+.+|++|+.|
T Consensus 295 L~~L~L~~N~l~~---lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 295 LKYFYFFDNMVTT---LPWEFGNLCNLQFL 321 (727)
T ss_dssp CSEEECCSSCCCC---CCSSTTSCTTCCCE
T ss_pred CCEEECCCCCCCc---cChhhhcCCCccEE
Confidence 8888887776543 34445555555443
No 14
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.47 E-value=1.2e-13 Score=114.13 Aligned_cols=124 Identities=16% Similarity=0.036 Sum_probs=65.2
Q ss_pred CCeeEEEEecCccc---hhhc-cCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCc-CccccCCCC
Q 042413 197 ANVKRCFILKDLID---FFSS-LKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQ-YPSGLENLY 271 (350)
Q Consensus 197 ~~~r~L~l~~~~~~---~~~~-~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~i~~l~ 271 (350)
..+++|.+..+... ++.. ..++ +|+.|.+.++... .. ..+..+++|++|++++|.++. +|..+..++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~--~L~~L~l~~n~l~----~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFV--NLEFLSLINVGLI----SV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGG--GCCEEEEESSCCC----CC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCC--CCCEEeCcCCCCC----Ch--hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 44555555555442 2222 2333 5555555555542 11 344555555666666555554 444444455
Q ss_pred CCCeeeeeCCCCcccc--hhhhcCcCCCEEEccCCcCcccch----hccccccCcEEEeeccC
Q 042413 272 LLKYLKLNIPSLKCLH--SLLCTLLNLETLEMPSSYIDQSPH----DIWMMQKLMHLYFYCIS 328 (350)
Q Consensus 272 ~L~~L~l~~~~l~~lP--~~i~~l~~L~~L~l~~~~l~~lP~----~i~~L~~L~~L~l~~~~ 328 (350)
+|++|++++|.++.+| ..++.+++|++|++++|.+..+|. .+..+++|++|++++|.
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 5666666655555544 455555556666665555555554 45555556665555553
No 15
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.47 E-value=2.8e-13 Score=120.80 Aligned_cols=131 Identities=20% Similarity=0.185 Sum_probs=87.4
Q ss_pred CCCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcc-ccCCCC
Q 042413 196 LANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPS-GLENLY 271 (350)
Q Consensus 196 ~~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~ 271 (350)
+..+++|.+..+.+ ..+. ...++ +|+.|.+.++.. ....+..|..+++|++|++++|.++.+|. .+..++
T Consensus 36 ~~~l~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l----~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 109 (270)
T 2o6q_A 36 PADTKKLDLQSNKLSSLPSKAFHRLT--KLRLLYLNDNKL----QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV 109 (270)
T ss_dssp CTTCSEEECCSSCCSCCCTTSSSSCT--TCCEEECCSSCC----SCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCS
T ss_pred CCCCCEEECcCCCCCeeCHHHhcCCC--CCCEEECCCCcc----CeeChhhhcCCCCCCEEECCCCcCCcCCHhHccccc
Confidence 35677777776665 2222 22444 777777777665 34455556777777777777777776664 346677
Q ss_pred CCCeeeeeCCCCcccchh-hhcCcCCCEEEccCCcCcccchh-ccccccCcEEEeeccCCCCC
Q 042413 272 LLKYLKLNIPSLKCLHSL-LCTLLNLETLEMPSSYIDQSPHD-IWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 272 ~L~~L~l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~ 332 (350)
+|++|++++|.++.+|+. ++.+++|++|++++|.+..+|.. +..+++|++|++++|.....
T Consensus 110 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 777777777777766543 46777777777777777777664 66777777777777755544
No 16
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.46 E-value=1.6e-13 Score=118.69 Aligned_cols=128 Identities=16% Similarity=0.096 Sum_probs=92.7
Q ss_pred CCCeeEEEEecCcc-ch-hh--ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcc-ccCCC
Q 042413 196 LANVKRCFILKDLI-DF-FS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPS-GLENL 270 (350)
Q Consensus 196 ~~~~r~L~l~~~~~-~~-~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l 270 (350)
+..++.|.+..+.+ .. +. ...++ +|+.|.+.++.. ....+..|..+++|++|+|++|.++.+|. .++.+
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~--~L~~L~L~~N~i----~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 104 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLP--QLRKINFSNNKI----TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGL 104 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCT--TCCEEECCSSCC----CEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTC
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCC--CCCEEECCCCcC----CEECHHHhCCCCCCCEEECCCCccCccCHhHhcCC
Confidence 34567777777776 22 11 23455 888888877776 44555677788888888888888876654 47778
Q ss_pred CCCCeeeeeCCCCccc-chhhhcCcCCCEEEccCCcCccc-chhccccccCcEEEeeccCC
Q 042413 271 YLLKYLKLNIPSLKCL-HSLLCTLLNLETLEMPSSYIDQS-PHDIWMMQKLMHLYFYCISP 329 (350)
Q Consensus 271 ~~L~~L~l~~~~l~~l-P~~i~~l~~L~~L~l~~~~l~~l-P~~i~~L~~L~~L~l~~~~~ 329 (350)
++|++|+|++|.++.+ |..+..+++|++|++++|.+..+ |..+..+++|+.|++++|..
T Consensus 105 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 105 ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred cCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 8888888888888766 56677888888888888877777 56777888888888877754
No 17
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=3e-13 Score=117.70 Aligned_cols=121 Identities=25% Similarity=0.260 Sum_probs=102.9
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccc-cCCCCCCCeeeeeCCCCcccchh-hhcCcCCCE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSG-LENLYLLKYLKLNIPSLKCLHSL-LCTLLNLET 298 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~l~~lP~~-i~~l~~L~~ 298 (350)
+++.|.+.++.. ....+..|..+++|++|+|++|.++.+|.. +..+++|++|+|++|.++.+|.. +..+++|++
T Consensus 41 ~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 41 NAQILYLHDNQI----TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE 116 (229)
T ss_dssp TCSEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCEEEcCCCcc----CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCe
Confidence 999999999987 456667889999999999999999988854 68999999999999999999876 588999999
Q ss_pred EEccCCcCcccchhccccccCcEEEeeccCCCCCCC-Ccccccccccc
Q 042413 299 LEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKN-YSSSLKNLIFI 345 (350)
Q Consensus 299 L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L 345 (350)
|++++|.+..+|..+..+++|++|++++|.....+. .+..+.+|+.|
T Consensus 117 L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 117 LFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp EECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred EeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 999999999999999999999999999997776532 23334444433
No 18
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=6.8e-14 Score=113.19 Aligned_cols=109 Identities=19% Similarity=0.213 Sum_probs=90.5
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcc-cchhhhcCcCCCEE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKC-LHSLLCTLLNLETL 299 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~-lP~~i~~l~~L~~L 299 (350)
+++.|.+.++... ....+..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..++.+++|++|
T Consensus 18 ~l~~L~l~~n~l~---~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 18 DVKELVLDNSRSN---EGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GCSEEECTTCBCB---TTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred cCeEEEccCCcCC---hhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 7888888888762 134455678889999999999998877 778889999999999999986 78877889999999
Q ss_pred EccCCcCcccc--hhccccccCcEEEeeccCCCCCC
Q 042413 300 EMPSSYIDQSP--HDIWMMQKLMHLYFYCISPCTSK 333 (350)
Q Consensus 300 ~l~~~~l~~lP--~~i~~L~~L~~L~l~~~~~~~~~ 333 (350)
++++|.+..+| ..++.+++|++|++++|.....+
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence 99999888876 78899999999999988766553
No 19
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.44 E-value=3.6e-13 Score=120.89 Aligned_cols=107 Identities=19% Similarity=0.253 Sum_probs=57.8
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcc-ccCCCCCCCeeeeeCCCCcccchh-hhcCcCCCE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPS-GLENLYLLKYLKLNIPSLKCLHSL-LCTLLNLET 298 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~l~~lP~~-i~~l~~L~~ 298 (350)
+|++|.+.++.. ....+..+..+++|++|++++|.++.+|. .++.+++|++|++++|.++.+|.. +..+++|++
T Consensus 106 ~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 106 RLHTLHLDRCGL----QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181 (285)
T ss_dssp TCCEEECTTSCC----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCcC----CEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCE
Confidence 555555555443 22333445555555666666555554443 245555666666666655555442 455566666
Q ss_pred EEccCCcCccc-chhccccccCcEEEeeccCCCC
Q 042413 299 LEMPSSYIDQS-PHDIWMMQKLMHLYFYCISPCT 331 (350)
Q Consensus 299 L~l~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~ 331 (350)
|++++|.+..+ |..++.+++|+.|++++|....
T Consensus 182 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215 (285)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred EECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence 66666644444 4455556666666665554443
No 20
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.44 E-value=5.2e-13 Score=114.19 Aligned_cols=130 Identities=18% Similarity=0.173 Sum_probs=102.9
Q ss_pred CCCCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccc-cCCC
Q 042413 195 SLANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSG-LENL 270 (350)
Q Consensus 195 ~~~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l 270 (350)
.+..+++|.+..+.. ..+. ...++ +|+.|.+.++.. ....+..|..+++|++|++++|.++.+|.. ++.+
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 99 (208)
T 2o6s_A 26 IPAQTTYLDLETNSLKSLPNGVFDELT--SLTQLYLGGNKL----QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL 99 (208)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCT--TCSEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCCcEEEcCCCccCcCChhhhcccc--cCcEEECCCCcc----CccChhhcCCCCCcCEEECCCCcCCccCHhHhcCc
Confidence 346788899888877 3333 22455 899999988876 445556678899999999999998877754 6789
Q ss_pred CCCCeeeeeCCCCcccchh-hhcCcCCCEEEccCCcCcccchh-ccccccCcEEEeeccCCC
Q 042413 271 YLLKYLKLNIPSLKCLHSL-LCTLLNLETLEMPSSYIDQSPHD-IWMMQKLMHLYFYCISPC 330 (350)
Q Consensus 271 ~~L~~L~l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~ 330 (350)
++|++|++++|.++.+|+. ++.+++|++|++++|.+..+|.. +..+++|++|++++|...
T Consensus 100 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 9999999999999888765 58889999999999988888775 778899999999887543
No 21
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.43 E-value=5.4e-13 Score=120.32 Aligned_cols=88 Identities=24% Similarity=0.220 Sum_probs=45.5
Q ss_pred HhcCCceeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCcccchh-hhcCcCCCEEEccCCcCcccchh-ccccccC
Q 042413 243 FFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCLHSL-LCTLLNLETLEMPSSYIDQSPHD-IWMMQKL 319 (350)
Q Consensus 243 ~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~~lP~~-i~~L~~L 319 (350)
.+..+++|++|++++|.++.+| ..+..+++|++|++++|.++.+|.. +..+++|+.|++++|.+..+|.. +..+++|
T Consensus 95 ~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 174 (290)
T 1p9a_G 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174 (290)
T ss_dssp CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC
T ss_pred hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCC
Confidence 3444555555555555555444 3345555555555555555555443 24555555555555555555543 2445555
Q ss_pred cEEEeeccCCC
Q 042413 320 MHLYFYCISPC 330 (350)
Q Consensus 320 ~~L~l~~~~~~ 330 (350)
++|++++|...
T Consensus 175 ~~L~L~~N~l~ 185 (290)
T 1p9a_G 175 DTLLLQENSLY 185 (290)
T ss_dssp CEEECCSSCCC
T ss_pred CEEECCCCcCC
Confidence 55555555444
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.43 E-value=2.3e-13 Score=124.12 Aligned_cols=127 Identities=13% Similarity=0.078 Sum_probs=71.2
Q ss_pred CCeeEEEEecCccc----hhh-ccCCCCCCeeEEEEec-CCCCCCCccchHHHhcCCceeeEEEccCCCCC-cCccccCC
Q 042413 197 ANVKRCFILKDLID----FFS-SLKHSDMYLQSFLNHS-SKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD-QYPSGLEN 269 (350)
Q Consensus 197 ~~~r~L~l~~~~~~----~~~-~~~~~~~~Lr~L~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~ 269 (350)
.++++|.+..+... .+. ...++ +|++|.+.+ +.. ....+..+.++++|++|+|++|.++ .+|..++.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~--~L~~L~L~~~n~l----~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLP--YLNFLYIGGINNL----VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCT--TCSEEEEEEETTE----ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCC--CCCeeeCCCCCcc----cccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC
Confidence 45666666655542 122 22344 666666663 433 2233445556666666666666655 55556666
Q ss_pred CCCCCeeeeeCCCCc-ccchhhhcCcCCCEEEccCCcCc-ccchhccccc-cCcEEEeeccCC
Q 042413 270 LYLLKYLKLNIPSLK-CLHSLLCTLLNLETLEMPSSYID-QSPHDIWMMQ-KLMHLYFYCISP 329 (350)
Q Consensus 270 l~~L~~L~l~~~~l~-~lP~~i~~l~~L~~L~l~~~~l~-~lP~~i~~L~-~L~~L~l~~~~~ 329 (350)
+++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..++.++ +|++|++++|..
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 666666666666655 55666666666666666666544 5566666655 566666655533
No 23
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.42 E-value=5.3e-13 Score=119.79 Aligned_cols=144 Identities=17% Similarity=0.163 Sum_probs=93.8
Q ss_pred CCeeEEEEecCcc-ch-h-hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCCCC
Q 042413 197 ANVKRCFILKDLI-DF-F-SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENLYL 272 (350)
Q Consensus 197 ~~~r~L~l~~~~~-~~-~-~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~ 272 (350)
..+++|.+..+.. .. + ....++ +|++|.+.++.. .....+..+..+++|+.|++++|.++.+ |..+..+++
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 130 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLA--LLEQLDLSDNAQ---LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCT--TCCEEECCSCTT---CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred CCCCEEECCCCccceeCHhhcCCcc--CCCEEeCCCCCC---ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcC
Confidence 4566666666655 22 1 122344 777777776652 1334456677777788888888777755 456777788
Q ss_pred CCeeeeeCCCCcccchh-hhcCcCCCEEEccCCcCcccch-hccccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413 273 LKYLKLNIPSLKCLHSL-LCTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA 347 (350)
Q Consensus 273 L~~L~l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~ 347 (350)
|++|++++|.++.+|.. ++.+++|++|++++|.+..+|. .+..+++|++|++++|..... .+..+.++++|+.
T Consensus 131 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~ 205 (285)
T 1ozn_A 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV--HPHAFRDLGRLMT 205 (285)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE--CTTTTTTCTTCCE
T ss_pred CCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc--CHhHccCcccccE
Confidence 88888888877777654 6777888888888887777776 477778888888877765544 2333444444443
No 24
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.42 E-value=3.9e-13 Score=120.11 Aligned_cols=131 Identities=15% Similarity=0.092 Sum_probs=93.6
Q ss_pred CCCeeEEEEecCcc-chh--hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCC
Q 042413 196 LANVKRCFILKDLI-DFF--SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLY 271 (350)
Q Consensus 196 ~~~~r~L~l~~~~~-~~~--~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~ 271 (350)
+..+++|.+..+.. ..+ ....++ +|+.|.+.++.. ....+..|..+++|++|++++|.++.++ ..+..++
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~--~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFP--ELQVLDLSRCEI----QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCT--TCSEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred CCCccEEECCCCcccccCHhHhcccc--CCcEEECCCCcC----CccCHHHccCCcCCCEEECCCCccCccChhhhcCCc
Confidence 45678888877766 222 233455 888888877765 4455556777888888888888877554 5677788
Q ss_pred CCCeeeeeCCCCcccch-hhhcCcCCCEEEccCCcCcc--cchhccccccCcEEEeeccCCCCC
Q 042413 272 LLKYLKLNIPSLKCLHS-LLCTLLNLETLEMPSSYIDQ--SPHDIWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 272 ~L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~~~l~~--lP~~i~~L~~L~~L~l~~~~~~~~ 332 (350)
+|++|++++|.+..++. .++.+++|++|++++|.+.. +|..++.+++|++|++++|.....
T Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 88888888887776655 57778888888888886665 677788888888888877765443
No 25
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.42 E-value=6.9e-13 Score=118.37 Aligned_cols=128 Identities=18% Similarity=0.144 Sum_probs=108.0
Q ss_pred CCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccc-cCCCCCCC
Q 042413 197 ANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSG-LENLYLLK 274 (350)
Q Consensus 197 ~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~ 274 (350)
..++.+.+..+.. ..+....++ +|+.|.+.++... .. +.+..+++|++|++++|.++.+|.. ++.+++|+
T Consensus 41 ~~L~~L~l~~~~i~~~~~l~~l~--~L~~L~l~~n~l~----~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQGIQYLP--NVRYLALGGNKLH----DI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp TTCCEEECTTSCCCCCTTGGGCT--TCCEEECTTSCCC----CC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cceeeeeeCCCCcccccccccCC--CCcEEECCCCCCC----Cc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 5688888887776 444455677 9999999998873 22 4788999999999999999977754 68999999
Q ss_pred eeeeeCCCCcccchh-hhcCcCCCEEEccCCcCcccchh-ccccccCcEEEeeccCCCCC
Q 042413 275 YLKLNIPSLKCLHSL-LCTLLNLETLEMPSSYIDQSPHD-IWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 275 ~L~l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~ 332 (350)
+|++++|.++.+|+. ++.+++|++|++++|.+..+|.. ++.+++|++|++++|.....
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 999999999988765 68999999999999998888875 68999999999999977654
No 26
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.42 E-value=8.4e-13 Score=114.14 Aligned_cols=121 Identities=18% Similarity=0.162 Sum_probs=102.0
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCCCCCCeeeeeCCCCcccchhh-hcCcCCCE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENLYLLKYLKLNIPSLKCLHSLL-CTLLNLET 298 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~l~~lP~~i-~~l~~L~~ 298 (350)
+++.|.+.++.+ ....+..|..+++|+.|+|++|.++.+ |..+..+++|++|+|++|.++.+|..+ ..+++|++
T Consensus 33 ~l~~L~l~~n~i----~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 33 TITEIRLEQNTI----KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108 (220)
T ss_dssp TCCEEECCSSCC----CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCEEECCCCcC----CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCE
Confidence 899999999987 556667889999999999999999966 788999999999999999999998874 78999999
Q ss_pred EEccCCcCcccc-hhccccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413 299 LEMPSSYIDQSP-HDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA 347 (350)
Q Consensus 299 L~l~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~ 347 (350)
|++++|.+..++ ..+..+++|++|++++|.....+. ..+..+++|+.
T Consensus 109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~ 156 (220)
T 2v9t_B 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK--GTFSPLRAIQT 156 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCE
T ss_pred EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH--HHHhCCCCCCE
Confidence 999999888884 578999999999999998776632 23444444443
No 27
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.42 E-value=5.4e-13 Score=120.34 Aligned_cols=143 Identities=17% Similarity=0.119 Sum_probs=113.4
Q ss_pred CCCCeeEEEEecCcc-ch--hhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCC
Q 042413 195 SLANVKRCFILKDLI-DF--FSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLY 271 (350)
Q Consensus 195 ~~~~~r~L~l~~~~~-~~--~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~ 271 (350)
.+..++.|.+..+.+ .. .....++ +|+.|.+.++... .... ...+++|++|++++|.++.+|..+..++
T Consensus 29 ~~~~l~~L~L~~N~l~~~~~~~~~~l~--~L~~L~L~~n~l~----~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 100 (290)
T 1p9a_G 29 LPKDTTILHLSENLLYTFSLATLMPYT--RLTQLNLDRAELT----KLQV--DGTLPVLGTLDLSHNQLQSLPLLGQTLP 100 (290)
T ss_dssp CCTTCCEEECTTSCCSEEEGGGGTTCT--TCCEEECTTSCCC----EEEC--CSCCTTCCEEECCSSCCSSCCCCTTTCT
T ss_pred CCCCCCEEEcCCCcCCccCHHHhhcCC--CCCEEECCCCccC----cccC--CCCCCcCCEEECCCCcCCcCchhhccCC
Confidence 346789999998887 22 2234566 9999999998873 2222 2788999999999999999999999999
Q ss_pred CCCeeeeeCCCCcccc-hhhhcCcCCCEEEccCCcCcccchh-ccccccCcEEEeeccCCCCCCC-Ccccccccccc
Q 042413 272 LLKYLKLNIPSLKCLH-SLLCTLLNLETLEMPSSYIDQSPHD-IWMMQKLMHLYFYCISPCTSKN-YSSSLKNLIFI 345 (350)
Q Consensus 272 ~L~~L~l~~~~l~~lP-~~i~~l~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L 345 (350)
+|++|++++|.++.+| ..+..+++|++|++++|.+..+|.. +..+++|+.|++++|.....+. .+..+.+|+.|
T Consensus 101 ~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 177 (290)
T 1p9a_G 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177 (290)
T ss_dssp TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEE
T ss_pred CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEE
Confidence 9999999999999887 4589999999999999999998875 5789999999999997766532 23334444433
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.41 E-value=3.4e-13 Score=133.84 Aligned_cols=132 Identities=15% Similarity=0.080 Sum_probs=107.6
Q ss_pred CCCCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcc-ccCCC
Q 042413 195 SLANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPS-GLENL 270 (350)
Q Consensus 195 ~~~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l 270 (350)
.+..+++|.+..+.+ .++. ...++ +|+.|.+.++.+ ..+.+..|.++++|++|+|++|.++.+|. .++++
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~--~L~~L~Ls~N~i----~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L 123 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFP--ELQVLDLSRCEI----QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 123 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCT--TCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTC
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCC--CCCEEECCCCcC----CCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCC
Confidence 456889999998887 3332 34556 999999998876 55667788999999999999999998874 57889
Q ss_pred CCCCeeeeeCCCCcccch-hhhcCcCCCEEEccCCcCcc--cchhccccccCcEEEeeccCCCCC
Q 042413 271 YLLKYLKLNIPSLKCLHS-LLCTLLNLETLEMPSSYIDQ--SPHDIWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 271 ~~L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~~~l~~--lP~~i~~L~~L~~L~l~~~~~~~~ 332 (350)
++|++|++++|.++.+|+ .++++++|++|++++|.+.. +|..++.+++|++|++++|.....
T Consensus 124 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 124 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 999999999999998876 47899999999999997654 577888999999999988866554
No 29
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.41 E-value=9.4e-13 Score=112.55 Aligned_cols=108 Identities=20% Similarity=0.260 Sum_probs=92.7
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccc-cCCCCCCCeeeeeCCCCcccchh-hhcCcCCCE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSG-LENLYLLKYLKLNIPSLKCLHSL-LCTLLNLET 298 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~l~~lP~~-i~~l~~L~~ 298 (350)
+++.|.+.++.. ....+..|..+++|++|++++|.++.+|.. +..+++|++|++++|.++.+|.. ++.+++|++
T Consensus 29 ~l~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 29 QTTYLDLETNSL----KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp TCSEEECCSSCC----CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCcEEEcCCCcc----CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCE
Confidence 899999999887 445666788999999999999999988754 57899999999999999988765 589999999
Q ss_pred EEccCCcCcccchh-ccccccCcEEEeeccCCCCC
Q 042413 299 LEMPSSYIDQSPHD-IWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 299 L~l~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~ 332 (350)
|++++|.+..+|.. +..+++|++|++++|.....
T Consensus 105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 139 (208)
T 2o6s_A 105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV 139 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred EEcCCCcCcccCHhHhccCCcCCEEECCCCcccee
Confidence 99999988888875 68899999999999876654
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.41 E-value=3.8e-13 Score=133.38 Aligned_cols=132 Identities=17% Similarity=0.115 Sum_probs=112.9
Q ss_pred CCCCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCC
Q 042413 195 SLANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENL 270 (350)
Q Consensus 195 ~~~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l 270 (350)
.+..+++|.+..+.. ..+. ...++ +|++|.+.++.. ....+..|.++++|++|+|++|.++.+ |..++++
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l----~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 103 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFS--ELQWLDLSRCEI----ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL 103 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCT--TCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTC
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCc--cCcEEeCCCCcc----cccCHHHhhchhhcCEeECCCCcccccChhhcCCc
Confidence 457899999999887 3332 34566 999999999876 556677899999999999999999876 7889999
Q ss_pred CCCCeeeeeCCCCcccc-hhhhcCcCCCEEEccCCcCc--ccchhccccccCcEEEeeccCCCCC
Q 042413 271 YLLKYLKLNIPSLKCLH-SLLCTLLNLETLEMPSSYID--QSPHDIWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 271 ~~L~~L~l~~~~l~~lP-~~i~~l~~L~~L~l~~~~l~--~lP~~i~~L~~L~~L~l~~~~~~~~ 332 (350)
++|++|++++|.+..+| ..++++++|++|++++|.+. .+|..++++++|++|++++|.....
T Consensus 104 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 104 TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp TTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred ccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 99999999999998876 67899999999999999776 5899999999999999999876554
No 31
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.41 E-value=7.4e-13 Score=116.72 Aligned_cols=127 Identities=17% Similarity=0.113 Sum_probs=103.1
Q ss_pred eEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCCCCCeee
Q 042413 200 KRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLKYLK 277 (350)
Q Consensus 200 r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~ 277 (350)
+++....+.. .+|.... + .++.|.+.++.. ....+..|.++++|++|+|++|.++.++ ..+..+++|++|+
T Consensus 17 ~~l~~~~~~l~~~p~~~~-~--~l~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIP-A--DTEKLDLQSTGL----ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp TEEECTTCCCSSCCSCCC-T--TCCEEECTTSCC----CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred eEEecCCCCccccCCCCC-C--CCCEEEccCCCc----CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 3444444444 3443332 4 899999999887 4566677899999999999999999766 4578999999999
Q ss_pred eeCCCCcccch-hhhcCcCCCEEEccCCcCcccchh-ccccccCcEEEeeccCCCCCC
Q 042413 278 LNIPSLKCLHS-LLCTLLNLETLEMPSSYIDQSPHD-IWMMQKLMHLYFYCISPCTSK 333 (350)
Q Consensus 278 l~~~~l~~lP~-~i~~l~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~ 333 (350)
+++|.++.+|. .++.+++|++|++++|.+..+|.. +..+++|++|++++|.....+
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence 99999998875 458999999999999999999875 688999999999999776653
No 32
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.41 E-value=3.6e-13 Score=111.20 Aligned_cols=110 Identities=21% Similarity=0.206 Sum_probs=96.3
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcc-cchhhhcCcCCCEE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKC-LHSLLCTLLNLETL 299 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~-lP~~i~~l~~L~~L 299 (350)
+++.|.+.++... ...++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..++.+++|++|
T Consensus 25 ~L~~L~l~~n~l~---~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 25 AVRELVLDNCKSN---DGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp SCSEEECCSCBCB---TTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cCCEEECCCCCCC---hhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 8999999998872 134455678899999999999999988 789999999999999999987 78888889999999
Q ss_pred EccCCcCcccc--hhccccccCcEEEeeccCCCCCCC
Q 042413 300 EMPSSYIDQSP--HDIWMMQKLMHLYFYCISPCTSKN 334 (350)
Q Consensus 300 ~l~~~~l~~lP--~~i~~L~~L~~L~l~~~~~~~~~~ 334 (350)
++++|.+..+| ..+..+++|++|++++|.....+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence 99999999987 689999999999999997766543
No 33
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=3.5e-13 Score=112.26 Aligned_cols=81 Identities=15% Similarity=0.133 Sum_probs=45.0
Q ss_pred eeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhh-hcCcCCCEEEccCCcCcccch--hccccccCcEEEee
Q 042413 249 YLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLL-CTLLNLETLEMPSSYIDQSPH--DIWMMQKLMHLYFY 325 (350)
Q Consensus 249 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i-~~l~~L~~L~l~~~~l~~lP~--~i~~L~~L~~L~l~ 325 (350)
+|++|++++|.++.+ ..++.+++|++|++++|.++.+|+.+ +.+++|++|++++|.+..+|. .++.+++|++|+++
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEec
Confidence 555555555555544 34555555555555555555555443 555555555555555555554 45555555555555
Q ss_pred ccCCC
Q 042413 326 CISPC 330 (350)
Q Consensus 326 ~~~~~ 330 (350)
+|...
T Consensus 122 ~N~i~ 126 (176)
T 1a9n_A 122 RNPVT 126 (176)
T ss_dssp SSGGG
T ss_pred CCCCC
Confidence 55443
No 34
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.40 E-value=8.2e-13 Score=114.20 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=106.9
Q ss_pred EEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccc-hHHHhcCCceeeEEEccCCCCCcCcc-ccCCCCCCCeee
Q 042413 201 RCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKD-YENFFKRFKYLRVLNLGSAVLDQYPS-GLENLYLLKYLK 277 (350)
Q Consensus 201 ~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~-~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~ 277 (350)
.+.+..+.. .+|... .. .++.|.+.++.. ... ....|..+++|+.|+|++|.++.++. .++.+++|++|+
T Consensus 15 ~l~~s~n~l~~iP~~~-~~--~~~~L~L~~N~l----~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI-PQ--YTAELRLNNNEF----TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp EEECCSSCCSSCCSCC-CT--TCSEEECCSSCC----CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred EeEeCCCCcccCccCC-CC--CCCEEEcCCCcC----CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence 445555544 444322 33 778999999887 333 33558899999999999999997764 799999999999
Q ss_pred eeCCCCcccchh-hhcCcCCCEEEccCCcCccc-chhccccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413 278 LNIPSLKCLHSL-LCTLLNLETLEMPSSYIDQS-PHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA 347 (350)
Q Consensus 278 l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~ 347 (350)
|++|.++.+|+. ++.+++|++|++++|.+..+ |..+..+++|++|++++|..... .+..+..+++|+.
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~ 157 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV--APGAFDTLHSLST 157 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB--CTTTTTTCTTCCE
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE--CHHHhcCCCCCCE
Confidence 999999988765 78999999999999988887 56899999999999999987766 2344444554443
No 35
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.40 E-value=1.1e-12 Score=111.37 Aligned_cols=127 Identities=17% Similarity=0.139 Sum_probs=108.0
Q ss_pred CCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC-cCccccCCCCCC
Q 042413 196 LANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD-QYPSGLENLYLL 273 (350)
Q Consensus 196 ~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L 273 (350)
...++.|.+..+.. ..+....++ +|+.|.+.++.. ....+..+..+++|++|++++|.++ ..|..++.+++|
T Consensus 65 l~~L~~L~l~~n~~~~~~~l~~l~--~L~~L~l~~n~l----~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L 138 (197)
T 4ezg_A 65 AHNIKDLTINNIHATNYNPISGLS--NLERLRIMGKDV----TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138 (197)
T ss_dssp CTTCSEEEEESCCCSCCGGGTTCT--TCCEEEEECTTC----BGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC
T ss_pred CCCCCEEEccCCCCCcchhhhcCC--CCCEEEeECCcc----CcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC
Confidence 46799999999876 444455667 999999999887 3334566889999999999999998 478889999999
Q ss_pred CeeeeeCCC-CcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCC
Q 042413 274 KYLKLNIPS-LKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPC 330 (350)
Q Consensus 274 ~~L~l~~~~-l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~ 330 (350)
++|++++|. ++.+| .+..+++|++|++++|.+..+| .+..+++|++|++++|...
T Consensus 139 ~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 139 NSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred CEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 999999998 88887 6999999999999999999988 7999999999999998653
No 36
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.40 E-value=1.7e-12 Score=115.34 Aligned_cols=124 Identities=16% Similarity=0.056 Sum_probs=80.4
Q ss_pred CCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCe
Q 042413 197 ANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKY 275 (350)
Q Consensus 197 ~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~ 275 (350)
..++.|.+.++.+ .++....++ +|+.|.+.++... ...+ +..+++|+.|+|++|.++.+|.... .+|++
T Consensus 41 ~~L~~L~l~~n~i~~l~~l~~l~--~L~~L~L~~N~i~----~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~ 110 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLAGMQFFT--NLKELHLSHNQIS----DLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSR 110 (263)
T ss_dssp TTCSEEECTTSCCCCCTTGGGCT--TCCEEECCSSCCC----CCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCE
T ss_pred CcCcEEECcCCCcccchHHhhCC--CCCEEECCCCccC----CChh--hccCCCCCEEECCCCccCCcCcccc--CcccE
Confidence 4566666666655 344334455 7777777777652 2322 6777777777777777776664333 67777
Q ss_pred eeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCC
Q 042413 276 LKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 276 L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~ 332 (350)
|++++|.++.+| .++.+++|++|++++|.+..+| .++.+++|++|++++|.....
T Consensus 111 L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 111 LFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp EECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC
T ss_pred EEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch
Confidence 777777777665 3667777777777777766665 566777777777777655443
No 37
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.40 E-value=2.8e-13 Score=125.42 Aligned_cols=143 Identities=21% Similarity=0.154 Sum_probs=101.3
Q ss_pred CCCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccc-cCCCC
Q 042413 196 LANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSG-LENLY 271 (350)
Q Consensus 196 ~~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~ 271 (350)
+..+++|.+..+.. ..+. ...++ +|++|.+.++.. ....+..|.++++|++|++++|.++.+|.. ++.++
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~--~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 124 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCV--NLQALVLTSNGI----NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS 124 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCT--TCCEEECTTSCC----CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCT
T ss_pred cccCcEEECCCCcCcccCHHHhccCC--CCCEEECCCCcc----CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCc
Confidence 35788888887776 3332 33455 888888887765 445556677888888888888888877765 77888
Q ss_pred CCCeeeeeCCCCcccch--hhhcCcCCCEEEccCC-cCcccc-hhccccccCcEEEeeccCCCCCCCCccccccccccc
Q 042413 272 LLKYLKLNIPSLKCLHS--LLCTLLNLETLEMPSS-YIDQSP-HDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFIS 346 (350)
Q Consensus 272 ~L~~L~l~~~~l~~lP~--~i~~l~~L~~L~l~~~-~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 346 (350)
+|++|++++|.++.+|. .++.+++|++|++++| .+..+| ..++.+++|++|++++|..... .+..+.++++|+
T Consensus 125 ~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~ 201 (353)
T 2z80_A 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY--EPKSLKSIQNVS 201 (353)
T ss_dssp TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE--CTTTTTTCSEEE
T ss_pred cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc--CHHHHhccccCC
Confidence 88888888888888876 5678888888888887 577664 4677888888888887765544 233344444443
No 38
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.40 E-value=1.6e-12 Score=118.26 Aligned_cols=126 Identities=16% Similarity=0.148 Sum_probs=99.7
Q ss_pred CCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCC
Q 042413 196 LANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLK 274 (350)
Q Consensus 196 ~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~ 274 (350)
...++.|.+..+.. ..+....++ +|+.|.+.++... .. +.+..+++|+.|++++|.++.+|. ++.+++|+
T Consensus 62 l~~L~~L~L~~n~i~~~~~~~~l~--~L~~L~L~~n~l~----~~--~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~ 132 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLAPLKNLT--KITELELSGNPLK----NV--SAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQ 132 (308)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCC--SCCEEECCSCCCS----CC--GGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCC
T ss_pred cCCCCEEEccCCcCCCChhHccCC--CCCEEEccCCcCC----Cc--hhhcCCCCCCEEECCCCCCCCchh-hcCCCCCC
Confidence 46788888887776 444444566 8888888888763 22 357788888999999888887765 88888999
Q ss_pred eeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCC
Q 042413 275 YLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 275 ~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~ 332 (350)
+|++++|.++.+|. ++.+++|++|++++|.+..+|. +..+++|++|++++|.....
T Consensus 133 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 133 VLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp EEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred EEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcC
Confidence 99999988888876 8888899999999988888877 88888999999988866554
No 39
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.39 E-value=3.7e-13 Score=132.43 Aligned_cols=107 Identities=17% Similarity=0.173 Sum_probs=96.1
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLE 300 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~ 300 (350)
.|+.|.+.++... .+ +. +..+++|+.|+|++|.++.+|..++.+++|++|+|++|.++.+| .++.+++|++|+
T Consensus 442 ~L~~L~Ls~n~l~----~l-p~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~ 514 (567)
T 1dce_A 442 DVRVLHLAHKDLT----VL-CH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELL 514 (567)
T ss_dssp TCSEEECTTSCCS----SC-CC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEE
T ss_pred CceEEEecCCCCC----CC-cC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEE
Confidence 6888999888773 33 33 88999999999999999999999999999999999999999998 899999999999
Q ss_pred ccCCcCccc--chhccccccCcEEEeeccCCCCCCC
Q 042413 301 MPSSYIDQS--PHDIWMMQKLMHLYFYCISPCTSKN 334 (350)
Q Consensus 301 l~~~~l~~l--P~~i~~L~~L~~L~l~~~~~~~~~~ 334 (350)
+++|.+..+ |..++.+++|+.|++++|...+.+.
T Consensus 515 Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 999998888 8999999999999999998776654
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.39 E-value=4.4e-13 Score=122.20 Aligned_cols=128 Identities=12% Similarity=0.125 Sum_probs=87.0
Q ss_pred CCCeeEEEEec-Ccc--chhh-ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC-cCccccCCC
Q 042413 196 LANVKRCFILK-DLI--DFFS-SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD-QYPSGLENL 270 (350)
Q Consensus 196 ~~~~r~L~l~~-~~~--~~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l 270 (350)
...+++|.+.+ +.. ..+. ...++ +|+.|.+.++.. ....+..+.++++|++|+|++|.++ .+|..++.+
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~--~L~~L~Ls~n~l----~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 148 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLT--QLHYLYITHTNV----SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCT--TCSEEEEEEECC----EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCC--CCCEEECcCCee----CCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence 35677888873 544 2332 33455 888888877776 3345566777777888888877776 677777777
Q ss_pred CCCCeeeeeCCCCc-ccchhhhcCc-CCCEEEccCCcCc-ccchhccccccCcEEEeeccCCC
Q 042413 271 YLLKYLKLNIPSLK-CLHSLLCTLL-NLETLEMPSSYID-QSPHDIWMMQKLMHLYFYCISPC 330 (350)
Q Consensus 271 ~~L~~L~l~~~~l~-~lP~~i~~l~-~L~~L~l~~~~l~-~lP~~i~~L~~L~~L~l~~~~~~ 330 (350)
++|++|++++|.++ .+|..++.+. +|++|++++|.+. .+|..++.++ |+.|++++|...
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCccc
Confidence 77888888777776 7777777776 7777777777544 5566666665 666666665443
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.39 E-value=6.2e-13 Score=131.94 Aligned_cols=122 Identities=16% Similarity=0.071 Sum_probs=102.5
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcc-ccCCCCCCCeeeeeCCCCcccchh-hhcCcCCCE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPS-GLENLYLLKYLKLNIPSLKCLHSL-LCTLLNLET 298 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~l~~lP~~-i~~l~~L~~ 298 (350)
.++.|.+.++.+ ..+.+..|.++++|++|+|++|.++.+|. .+.+|++|++|+|++|+++.+|+. ++.+++|++
T Consensus 53 ~~~~LdLs~N~i----~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 53 STKNLDLSFNPL----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp TCCEEECTTSCC----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred CCCEEEeeCCCC----CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 899999999987 56777889999999999999999998864 689999999999999999999864 699999999
Q ss_pred EEccCCcCcccch-hccccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413 299 LEMPSSYIDQSPH-DIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA 347 (350)
Q Consensus 299 L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~ 347 (350)
|++++|.+..+|. .|+++++|++|++++|..... ..+..+.+|+.|++
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~-~~~~~~~~l~~L~~ 177 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEH 177 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-CCCGGGGGCTTCCE
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccC-CCchhhccchhhhh
Confidence 9999999999987 589999999999999876543 22333444444443
No 42
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.38 E-value=1.7e-12 Score=123.84 Aligned_cols=102 Identities=18% Similarity=0.105 Sum_probs=60.9
Q ss_pred CCCeeEEEEecCcc-chh--hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcc-ccCCCC
Q 042413 196 LANVKRCFILKDLI-DFF--SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPS-GLENLY 271 (350)
Q Consensus 196 ~~~~r~L~l~~~~~-~~~--~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~ 271 (350)
+..++.|.+..+.+ ..+ ....++ +|+.|.+.++.. ....+..|.++++|+.|+|++|.++.+|. .+..++
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~--~L~~L~Ls~n~i----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 136 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLR--HLEILQLSRNHI----RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLS 136 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCS--SCCEEECCSSCC----CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCS
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCC--CCCEEECCCCcC----CccChhhccCCccCCEEECCCCcCCeeCHhHhhccc
Confidence 45667777777666 221 223444 777777777665 34455666677777777777777666654 466667
Q ss_pred CCCeeeeeCCCCcccch-hhhcCcCCCEEEccC
Q 042413 272 LLKYLKLNIPSLKCLHS-LLCTLLNLETLEMPS 303 (350)
Q Consensus 272 ~L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~ 303 (350)
+|++|++++|.++.+|. .+..+++|++|++++
T Consensus 137 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred cCceeeCCCCcccccCHHHhhhCcccCEeCCCC
Confidence 77777777666665544 334444444444444
No 43
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.37 E-value=2.7e-12 Score=115.82 Aligned_cols=137 Identities=22% Similarity=0.254 Sum_probs=106.6
Q ss_pred CCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCC
Q 042413 196 LANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLK 274 (350)
Q Consensus 196 ~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~ 274 (350)
...++.|.+..+.. ..+....++ +|+.|.+.++... . + +.+..+++|+.|++++|.++.++ .+..+++|+
T Consensus 67 l~~L~~L~L~~n~l~~~~~l~~l~--~L~~L~l~~n~l~----~-~-~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~ 137 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIKPLANLK--NLGWLFLDENKVK----D-L-SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLE 137 (291)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCT--TCCEEECCSSCCC----C-G-GGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCC
T ss_pred CCCCCEEEccCCccCCCcccccCC--CCCEEECCCCcCC----C-C-hhhccCCCCCEEECCCCcCCCCh-hhcCCCCCC
Confidence 46788888888877 444445666 8999999888763 2 2 34888999999999999988774 678889999
Q ss_pred eeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413 275 YLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA 347 (350)
Q Consensus 275 ~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~ 347 (350)
+|++++|.++.+ +.++.+++|++|++++|.+..+|. +..+++|++|++++|.....+ .+.++++|+.
T Consensus 138 ~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~----~l~~l~~L~~ 204 (291)
T 1h6t_A 138 SLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR----ALAGLKNLDV 204 (291)
T ss_dssp EEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG----GGTTCTTCSE
T ss_pred EEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCCh----hhccCCCCCE
Confidence 999999998888 568899999999999998888877 888999999999988665532 2444444443
No 44
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.37 E-value=3.5e-12 Score=115.97 Aligned_cols=137 Identities=15% Similarity=0.138 Sum_probs=108.7
Q ss_pred CCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCC
Q 042413 196 LANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLK 274 (350)
Q Consensus 196 ~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~ 274 (350)
..++++|.+..+.. ..+....++ +|+.|.+.++... ... .+..+++|+.|++++|.++.+|. ++.+++|+
T Consensus 84 l~~L~~L~L~~n~l~~~~~~~~l~--~L~~L~l~~n~l~----~~~--~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~ 154 (308)
T 1h6u_A 84 LTKITELELSGNPLKNVSAIAGLQ--SIKTLDLTSTQIT----DVT--PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQ 154 (308)
T ss_dssp CCSCCEEECCSCCCSCCGGGTTCT--TCCEEECTTSCCC----CCG--GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCC
T ss_pred CCCCCEEEccCCcCCCchhhcCCC--CCCEEECCCCCCC----Cch--hhcCCCCCCEEECCCCccCcCcc-ccCCCCcc
Confidence 46788999988877 444455666 9999999888873 222 37889999999999999888776 88899999
Q ss_pred eeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413 275 YLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA 347 (350)
Q Consensus 275 ~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~ 347 (350)
+|++++|.++.+|. +..+++|+.|++++|.+..+|. +..+++|++|++++|.....+ .+.++++|+.
T Consensus 155 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~----~l~~l~~L~~ 221 (308)
T 1h6u_A 155 YLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS----PLANTSNLFI 221 (308)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG----GGTTCTTCCE
T ss_pred EEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc----cccCCCCCCE
Confidence 99999999988877 8899999999999998888876 888999999999988766543 2444444443
No 45
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.37 E-value=1.6e-12 Score=124.55 Aligned_cols=126 Identities=17% Similarity=0.091 Sum_probs=70.7
Q ss_pred CCCeeEEEEecCcc-ch--hhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccc-cCCCC
Q 042413 196 LANVKRCFILKDLI-DF--FSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSG-LENLY 271 (350)
Q Consensus 196 ~~~~r~L~l~~~~~-~~--~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~ 271 (350)
+..++.|.+..+.+ .. .....++ +|+.|.+.++.. ....+..|.++++|+.|+|++|.++.+|.. ++.++
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~--~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 147 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLH--HLEVLQLGRNSI----RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS 147 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCT--TCCEEECCSSCC----CEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCT
T ss_pred CCCccEEECcCCcCceECHHHcCCCC--CCCEEECCCCcc----CCcChhhccCcccCCEEECCCCcCCccChhhhcccC
Confidence 45677777777766 22 1223444 777777777665 344555666677777777777776666543 56666
Q ss_pred CCCeeeeeCCCCcccch-hhhcCcCCCEEEccCC-cCcccch-hccccccCcEEEeecc
Q 042413 272 LLKYLKLNIPSLKCLHS-LLCTLLNLETLEMPSS-YIDQSPH-DIWMMQKLMHLYFYCI 327 (350)
Q Consensus 272 ~L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~~-~l~~lP~-~i~~L~~L~~L~l~~~ 327 (350)
+|++|+|++|.++.+|. .+.++++|+.|++++| .+..+|. .+..+++|++|++++|
T Consensus 148 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence 77777777766665554 3344444444444443 4444433 2333444444444333
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.37 E-value=9e-13 Score=129.48 Aligned_cols=132 Identities=15% Similarity=0.086 Sum_probs=107.9
Q ss_pred CCCCeeEEEEecCcc-chh--hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCC
Q 042413 195 SLANVKRCFILKDLI-DFF--SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENL 270 (350)
Q Consensus 195 ~~~~~r~L~l~~~~~-~~~--~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l 270 (350)
.+..+++|.+..+.. ..+ ....++ +|++|.+.++.. ....+..|.++++|++|+|++|.++.+| ..++.+
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~i----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFP--ELQVLDLSRCEI----QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCS--SCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred ccccccEEEccCCccCccChhHhhCCC--CceEEECCCCcC----CccCcccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence 356789999988877 222 234566 999999998876 4566677889999999999999988665 678899
Q ss_pred CCCCeeeeeCCCCcccch-hhhcCcCCCEEEccCCcCcc--cchhccccccCcEEEeeccCCCCC
Q 042413 271 YLLKYLKLNIPSLKCLHS-LLCTLLNLETLEMPSSYIDQ--SPHDIWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 271 ~~L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~~~l~~--lP~~i~~L~~L~~L~l~~~~~~~~ 332 (350)
++|++|++++|.++.+|. .++.+++|++|++++|.+.. +|..++++++|++|++++|.....
T Consensus 100 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp TTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred cccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 999999999999988876 68899999999999997765 788999999999999988866544
No 47
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.37 E-value=1.1e-12 Score=122.07 Aligned_cols=132 Identities=17% Similarity=0.120 Sum_probs=109.5
Q ss_pred CCCCeeEEEEecCcc-chhhcc---CCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcc-ccCC
Q 042413 195 SLANVKRCFILKDLI-DFFSSL---KHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPS-GLEN 269 (350)
Q Consensus 195 ~~~~~r~L~l~~~~~-~~~~~~---~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~ 269 (350)
.+..++.|.+..+.+ ..+... .++ +|+.|.+.++.+ ....+..|..+++|+.|+|++|.++.+|. .+..
T Consensus 37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~--~L~~L~L~~N~i----~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 110 (361)
T 2xot_A 37 LPSYTALLDLSHNNLSRLRAEWTPTRLT--NLHSLLLSHNHL----NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD 110 (361)
T ss_dssp CCTTCSEEECCSSCCCEECTTSSSSCCT--TCCEEECCSSCC----CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CCCCCCEEECCCCCCCccChhhhhhccc--ccCEEECCCCcC----CccChhhccCCCCCCEEECCCCcCCcCCHHHhCC
Confidence 356688999998887 333322 455 999999999987 55666789999999999999999997764 6889
Q ss_pred CCCCCeeeeeCCCCccc-chhhhcCcCCCEEEccCCcCcccchhc----cccccCcEEEeeccCCCCC
Q 042413 270 LYLLKYLKLNIPSLKCL-HSLLCTLLNLETLEMPSSYIDQSPHDI----WMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 270 l~~L~~L~l~~~~l~~l-P~~i~~l~~L~~L~l~~~~l~~lP~~i----~~L~~L~~L~l~~~~~~~~ 332 (350)
+.+|++|+|++|.+..+ |..+..+++|+.|+|++|.+..+|..+ ..+++|++|++++|.+...
T Consensus 111 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 99999999999999977 567899999999999999999999876 5799999999999877654
No 48
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.36 E-value=5.5e-13 Score=135.03 Aligned_cols=107 Identities=16% Similarity=0.143 Sum_probs=94.7
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLE 300 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~ 300 (350)
.|+.|.+.++.. ..+ +..+..+++|++|+|++|.++.+|..++.|++|++|+|++|.|+.+|.+++.|.+|++|+
T Consensus 225 ~L~~L~Ls~n~l----~~l-~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 225 LWHALDLSNLQI----FNI-SANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCEEECTTSCC----SCC-CGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred CCcEEECCCCCC----CCC-ChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 899999988886 333 344558999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCcccchhccccccCcEEEeeccCCCCC
Q 042413 301 MPSSYIDQSPHDIWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 301 l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~ 332 (350)
|++|.+..+|.+|+.|++|++|++++|.+.+.
T Consensus 300 L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 300 FFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp CCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred CCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence 99999999999999999999999999876543
No 49
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.36 E-value=1.9e-12 Score=126.05 Aligned_cols=103 Identities=17% Similarity=0.095 Sum_probs=56.0
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETL 299 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L 299 (350)
+++.|.+.++.. ....+..|.++++|++|+|++|.++.+ |..++++++|++|++++|.++.+|.. .+++|++|
T Consensus 22 ~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L 95 (520)
T 2z7x_B 22 KTTILNISQNYI----SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHL 95 (520)
T ss_dssp TCSEEECCSSCC----CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEE
T ss_pred cccEEECCCCcc----cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEE
Confidence 555555555554 334444555555555555555555543 44555555555555555555555554 55555555
Q ss_pred EccCCcCcc--cchhccccccCcEEEeeccCC
Q 042413 300 EMPSSYIDQ--SPHDIWMMQKLMHLYFYCISP 329 (350)
Q Consensus 300 ~l~~~~l~~--lP~~i~~L~~L~~L~l~~~~~ 329 (350)
++++|.+.. +|..++++++|++|++++|..
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred eccCCccccccchhhhccCCcceEEEecCccc
Confidence 555554443 345555555555555555543
No 50
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.35 E-value=5.9e-12 Score=113.53 Aligned_cols=125 Identities=19% Similarity=0.167 Sum_probs=94.2
Q ss_pred CCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCC
Q 042413 196 LANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLK 274 (350)
Q Consensus 196 ~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~ 274 (350)
..+++.|.+..+.. ..+....++ +|+.|.+.++... .. +.+..+++|+.|++++|.++.+ ..++.+++|+
T Consensus 89 l~~L~~L~l~~n~l~~~~~l~~l~--~L~~L~L~~n~i~----~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~ 159 (291)
T 1h6t_A 89 LKNLGWLFLDENKVKDLSSLKDLK--KLKSLSLEHNGIS----DI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLD 159 (291)
T ss_dssp CTTCCEEECCSSCCCCGGGGTTCT--TCCEEECTTSCCC----CC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCS
T ss_pred CCCCCEEECCCCcCCCChhhccCC--CCCEEECCCCcCC----CC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCC
Confidence 46678888887776 444455566 8888888887763 22 4567788888888888888776 4677888888
Q ss_pred eeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCC
Q 042413 275 YLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCT 331 (350)
Q Consensus 275 ~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~ 331 (350)
+|++++|.++.+|+ +..+++|+.|++++|.+..+|. +..+++|+.|++++|....
T Consensus 160 ~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 160 TLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred EEEccCCccccchh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccC
Confidence 88888888887766 7888888888888888887764 7788888888888775443
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.35 E-value=1.7e-12 Score=117.66 Aligned_cols=131 Identities=17% Similarity=0.171 Sum_probs=96.8
Q ss_pred CCCeeEEEEecCcc-chh---hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCc--CccccCC
Q 042413 196 LANVKRCFILKDLI-DFF---SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQ--YPSGLEN 269 (350)
Q Consensus 196 ~~~~r~L~l~~~~~-~~~---~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~--lp~~i~~ 269 (350)
...+++|.+..+.. ..+ ....++ +|+.|.+.++.. ....+..+..+++|+.|++++|.+.. +|..+..
T Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~--~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 173 (306)
T 2z66_A 100 LEQLEHLDFQHSNLKQMSEFSVFLSLR--NLIYLDISHTHT----RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173 (306)
T ss_dssp CTTCCEEECTTSEEESSTTTTTTTTCT--TCCEEECTTSCC----EECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred CCCCCEEECCCCcccccccchhhhhcc--CCCEEECCCCcC----CccchhhcccCcCCCEEECCCCccccccchhHHhh
Confidence 35677777776665 222 233445 888888877765 34455667788888888888888764 7778888
Q ss_pred CCCCCeeeeeCCCCccc-chhhhcCcCCCEEEccCCcCcccch-hccccccCcEEEeeccCCCCC
Q 042413 270 LYLLKYLKLNIPSLKCL-HSLLCTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 270 l~~L~~L~l~~~~l~~l-P~~i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~ 332 (350)
+++|++|++++|.++.+ |..++.+++|++|++++|.+..+|. .+..+++|++|++++|.....
T Consensus 174 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 88888888888888866 5677888888888888887777765 677788888888888866554
No 52
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.34 E-value=3e-12 Score=120.05 Aligned_cols=131 Identities=15% Similarity=0.101 Sum_probs=108.1
Q ss_pred CCCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCC
Q 042413 196 LANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLY 271 (350)
Q Consensus 196 ~~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~ 271 (350)
...++++.+..+.. .++. ...++ +|+.|.+.++.. ....+..|..+++|++|+|++|.++.+| ..++.++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~--~L~~L~L~~n~i----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFR--QVELLNLNDLQI----EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCC--CCSEEECTTSCC----CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCceEEEecCCchhhCChhHhcccc--cCcEEECCCCcc----cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 36788999988877 4444 23566 999999998876 4566668899999999999999998765 5688999
Q ss_pred CCCeeeeeCCCCcccchhh-hcCcCCCEEEccCCcCcccch-hccccccCcEEEeeccCCCCC
Q 042413 272 LLKYLKLNIPSLKCLHSLL-CTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 272 ~L~~L~l~~~~l~~lP~~i-~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~ 332 (350)
+|++|++++|.++.+|..+ +.+++|++|++++|.+..+|. .++.+++|++|++++|.....
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 9999999999999998875 889999999999998877754 688999999999998866544
No 53
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.34 E-value=2.5e-12 Score=126.53 Aligned_cols=123 Identities=15% Similarity=0.058 Sum_probs=93.9
Q ss_pred eEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCCCCCCeee
Q 042413 200 KRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENLYLLKYLK 277 (350)
Q Consensus 200 r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~ 277 (350)
+++.+.++.. .+|.... + +++.|.+.++.. ....+..|.++++|++|+|++|.++.+ |..++++++|++|+
T Consensus 34 ~~l~ls~~~L~~ip~~~~-~--~L~~L~Ls~N~i----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP-P--RTKALSLSQNSI----SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp CEEECTTSCCCSCCTTSC-T--TCCEEECCSSCC----CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cEEEcCCCCCccCCCCCC-C--CcCEEECCCCCc----cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 5666666655 4443322 4 888888888876 455667788888888888888888865 56788888888888
Q ss_pred eeCCCCcccchhhhcCcCCCEEEccCCcCcccc--hhccccccCcEEEeeccCCCC
Q 042413 278 LNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSP--HDIWMMQKLMHLYFYCISPCT 331 (350)
Q Consensus 278 l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP--~~i~~L~~L~~L~l~~~~~~~ 331 (350)
+++|.++.+|.. .+++|++|++++|.+..+| ..++++++|++|++++|....
T Consensus 107 Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 107 VSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 888888888876 7888888888888777654 688888888888888876544
No 54
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.34 E-value=1.6e-12 Score=128.77 Aligned_cols=123 Identities=15% Similarity=0.074 Sum_probs=104.8
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCCCCCCeeeeeCCCCccc-chhhhcCcCCCE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENLYLLKYLKLNIPSLKCL-HSLLCTLLNLET 298 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~l~~l-P~~i~~l~~L~~ 298 (350)
+++.|.+.++.. ....+..|.++++|++|+|++|.++.+ |..++++++|++|++++|.++.+ |..++++++|++
T Consensus 33 ~l~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 33 STKNIDLSFNPL----KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp TCCEEECTTSCC----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred CcCEEECCCCCc----CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCE
Confidence 999999999987 556667899999999999999999966 56789999999999999999977 788999999999
Q ss_pred EEccCCcCcccc-hhccccccCcEEEeeccCCCCCCCCccccccccccccc
Q 042413 299 LEMPSSYIDQSP-HDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISAL 348 (350)
Q Consensus 299 L~l~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L 348 (350)
|++++|.+..+| ..++++++|++|++++|..... ..|..++++++|++|
T Consensus 109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L 158 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC-KLPAYFSNLTNLVHV 158 (606)
T ss_dssp EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCC-CCCGGGGTCTTCCEE
T ss_pred EEccCCccccccccccCCCCCCCEEeCCCCcccce-echHhHhhcCCCCEE
Confidence 999999888887 6899999999999999876542 235555556655544
No 55
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.34 E-value=6.1e-13 Score=107.51 Aligned_cols=122 Identities=16% Similarity=0.084 Sum_probs=103.7
Q ss_pred CCCeeEEEEecCccc---hhhc-cCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCc-CccccCCC
Q 042413 196 LANVKRCFILKDLID---FFSS-LKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQ-YPSGLENL 270 (350)
Q Consensus 196 ~~~~r~L~l~~~~~~---~~~~-~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~i~~l 270 (350)
+..++++.+..+... .+.. ..++ +|+.|.+.++... .. ..+..+++|++|++++|.++. +|..++.+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~--~L~~L~l~~n~l~----~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 87 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFE--ELEFLSTINVGLT----SI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKC 87 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCT--TCCEEECTTSCCC----CC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcC--CCcEEECcCCCCC----Cc--hhhhcCCCCCEEECCCCcccchHHHHhhhC
Confidence 467888998888764 3333 3455 9999999999873 22 678899999999999999996 88888889
Q ss_pred CCCCeeeeeCCCCcccc--hhhhcCcCCCEEEccCCcCcccch----hccccccCcEEEee
Q 042413 271 YLLKYLKLNIPSLKCLH--SLLCTLLNLETLEMPSSYIDQSPH----DIWMMQKLMHLYFY 325 (350)
Q Consensus 271 ~~L~~L~l~~~~l~~lP--~~i~~l~~L~~L~l~~~~l~~lP~----~i~~L~~L~~L~l~ 325 (350)
++|++|++++|.++.+| ..++.+++|++|++++|.+..+|. .++.+++|++|+++
T Consensus 88 ~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 88 PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99999999999999875 789999999999999999888886 78899999999885
No 56
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.34 E-value=2.1e-12 Score=131.72 Aligned_cols=76 Identities=12% Similarity=0.122 Sum_probs=43.6
Q ss_pred CCCCCeeeeeCCCCc-ccchhhhcCcCCCEEEccCCcCc-ccchhccccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413 270 LYLLKYLKLNIPSLK-CLHSLLCTLLNLETLEMPSSYID-QSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA 347 (350)
Q Consensus 270 l~~L~~L~l~~~~l~-~lP~~i~~l~~L~~L~l~~~~l~-~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~ 347 (350)
+.+|++|++++|.++ .+|.+++.+++|++|++++|.+. .+|..++++++|+.|++++|...+. .|..+.+|+.|+.
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~--ip~~l~~l~~L~~ 708 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR--IPQAMSALTMLTE 708 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEC--CCGGGGGCCCCSE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCc--CChHHhCCCCCCE
Confidence 345555666666554 55666666666666666666433 5666666666666666666655544 4444444444443
No 57
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.33 E-value=1.1e-12 Score=128.50 Aligned_cols=143 Identities=24% Similarity=0.175 Sum_probs=110.3
Q ss_pred CCCeeEEEEecCcc-chh--hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccc-cCCCC
Q 042413 196 LANVKRCFILKDLI-DFF--SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSG-LENLY 271 (350)
Q Consensus 196 ~~~~r~L~l~~~~~-~~~--~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~ 271 (350)
+..+++|.+..+.. ..+ ....++ +|++|.+.++.. ....+..|.++++|++|+|++|.++.+|.. ++.++
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACA--NLQVLILKSSRI----NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCT--TCCEEECTTSCC----CEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred CCCccEEECcCCccCccChhhhhcCC--cccEEECCCCCc----CccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 46789999988877 222 234566 999999998876 456667788999999999999998877754 88999
Q ss_pred CCCeeeeeCCCCcc--cchhhhcCcCCCEEEccCCc-Ccccch-hccccccCcEEEeeccCCCCCCCCccccccccccc
Q 042413 272 LLKYLKLNIPSLKC--LHSLLCTLLNLETLEMPSSY-IDQSPH-DIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFIS 346 (350)
Q Consensus 272 ~L~~L~l~~~~l~~--lP~~i~~l~~L~~L~l~~~~-l~~lP~-~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 346 (350)
+|++|++++|.++. .|..++++++|++|++++|. +..+|. .++.+++|++|++++|...+. .+..++++++|+
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~ 175 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY--QSQSLKSIRDIH 175 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE--CTTTTTTCSEEE
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc--ChhhhhccccCc
Confidence 99999999998874 46778899999999999984 788874 788899999999988876553 333444444433
No 58
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=1.1e-12 Score=109.31 Aligned_cols=126 Identities=17% Similarity=0.090 Sum_probs=107.0
Q ss_pred CCCCeeEEEEecCcc-chhhcc-CCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcccc-CCCC
Q 042413 195 SLANVKRCFILKDLI-DFFSSL-KHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGL-ENLY 271 (350)
Q Consensus 195 ~~~~~r~L~l~~~~~-~~~~~~-~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i-~~l~ 271 (350)
....++.|.+.++.. .++... ..+ +|+.|.+.++... .. ..+..+++|++|++++|.++.+|..+ +.++
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~--~L~~L~Ls~N~l~----~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLD--QFDAIDFSDNEIR----KL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTT--CCSEEECCSSCCC----EE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCC--CCCEEECCCCCCC----cc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 356789999988877 333222 233 8999999999873 23 57889999999999999999888665 8899
Q ss_pred CCCeeeeeCCCCcccch--hhhcCcCCCEEEccCCcCcccchh----ccccccCcEEEeeccC
Q 042413 272 LLKYLKLNIPSLKCLHS--LLCTLLNLETLEMPSSYIDQSPHD----IWMMQKLMHLYFYCIS 328 (350)
Q Consensus 272 ~L~~L~l~~~~l~~lP~--~i~~l~~L~~L~l~~~~l~~lP~~----i~~L~~L~~L~l~~~~ 328 (350)
+|++|++++|.++.+|. .++.+++|++|++++|.+..+|.. ++.+++|+.|++++|.
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99999999999999997 889999999999999999999985 9999999999998874
No 59
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.32 E-value=2.6e-12 Score=120.45 Aligned_cols=122 Identities=12% Similarity=0.129 Sum_probs=101.9
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCcccch-hhhcCcCCCE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLET 298 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~~ 298 (350)
+++.+.+.++.. ...++..+..+++|++|++++|.++.+| ..++.+++|++|++++|.++.+|+ .++.+++|++
T Consensus 46 ~l~~l~l~~~~l----~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 46 NQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp CCSEEEEESCEE----SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CceEEEecCCch----hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 999999998876 5567778899999999999999999776 589999999999999999998765 5799999999
Q ss_pred EEccCCcCcccchh-ccccccCcEEEeeccCCCCCCCCccccccccccccc
Q 042413 299 LEMPSSYIDQSPHD-IWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISAL 348 (350)
Q Consensus 299 L~l~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L 348 (350)
|++++|.+..+|.. ++++++|++|++++|..... .+..+.++++|+.|
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L 170 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI--EDDTFQATTSLQNL 170 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC--CTTTTSSCTTCCEE
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc--ChhhccCCCCCCEE
Confidence 99999999999987 48999999999999877655 22334444444433
No 60
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.32 E-value=3.8e-12 Score=111.21 Aligned_cols=124 Identities=16% Similarity=0.168 Sum_probs=57.8
Q ss_pred CCeeEEEEecCc-c-chhh--ccCCCCCCeeEEEEec-CCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCC
Q 042413 197 ANVKRCFILKDL-I-DFFS--SLKHSDMYLQSFLNHS-SKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLY 271 (350)
Q Consensus 197 ~~~r~L~l~~~~-~-~~~~--~~~~~~~~Lr~L~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~ 271 (350)
.+++.|.+..+. . .++. ...++ +|+.|.+.+ +.. ....+..|..+++|+.|++++|.++.+|. ++.+.
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~--~L~~L~l~~~n~l----~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~ 127 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLS--KVTHIEIRNTRNL----TYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVY 127 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCT--TCCEEEEEEETTC----CEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCC
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCc--CCcEEECCCCCCe----eEcCHHHhCCCCCCCEEeCCCCCCccccc-ccccc
Confidence 445555555553 3 2221 22334 555555554 443 23333444555555555555555554444 44444
Q ss_pred CCC---eeeeeCC-CCcccchh-hhcCcCCC-EEEccCCcCcccchhccccccCcEEEeecc
Q 042413 272 LLK---YLKLNIP-SLKCLHSL-LCTLLNLE-TLEMPSSYIDQSPHDIWMMQKLMHLYFYCI 327 (350)
Q Consensus 272 ~L~---~L~l~~~-~l~~lP~~-i~~l~~L~-~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~ 327 (350)
+|+ +|++++| .++.+|.. +..+++|+ +|++++|.+..+|......++|+.|++++|
T Consensus 128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence 444 5555554 44444432 34455555 555555544444443333344444444444
No 61
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.32 E-value=6.2e-12 Score=104.62 Aligned_cols=107 Identities=18% Similarity=0.213 Sum_probs=92.8
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccc-cCCCCCCCeeeeeCCCCcccchh-hhcCcCCCE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSG-LENLYLLKYLKLNIPSLKCLHSL-LCTLLNLET 298 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~l~~lP~~-i~~l~~L~~ 298 (350)
+++.|.+.++.. ....+..+..+++|++|++++|.++.+|.. ++.+++|++|++++|.++.+|.. ++.+++|++
T Consensus 29 ~l~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 104 (177)
T 2o6r_A 29 SATRLELESNKL----QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKE 104 (177)
T ss_dssp TCSEEECCSSCC----CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCcEEEeCCCcc----cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCE
Confidence 899999999886 445666788999999999999999988755 68999999999999999988875 588999999
Q ss_pred EEccCCcCcccchh-ccccccCcEEEeeccCCCC
Q 042413 299 LEMPSSYIDQSPHD-IWMMQKLMHLYFYCISPCT 331 (350)
Q Consensus 299 L~l~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~ 331 (350)
|++++|.+..+|.. +..+++|++|++++|....
T Consensus 105 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 105 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 99999999999886 4779999999999986544
No 62
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.32 E-value=4.4e-12 Score=110.76 Aligned_cols=131 Identities=14% Similarity=0.136 Sum_probs=110.4
Q ss_pred CCCCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCC-CCCCCccchHHHhcCCceeeEEEccC-CCCCcCc-cccC
Q 042413 195 SLANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSK-NNHLNSKDYENFFKRFKYLRVLNLGS-AVLDQYP-SGLE 268 (350)
Q Consensus 195 ~~~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~-~~~~~~~~~~~~~~~l~~L~~L~L~~-~~l~~lp-~~i~ 268 (350)
.+..++.|.+..+.. .++. ...++ +|++|.+.++. . ..+.+..|.++++|++|++++ |.++.+| ..+.
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~--~L~~L~l~~n~~l----~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~ 102 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLP--NISRIYVSIDVTL----QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK 102 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCT--TCCEEEEECCSSC----CEECTTTEESCTTCCEEEEEEETTCCEECTTSEE
T ss_pred CCCcccEEEEeCCcceEECHHHccCCC--CCcEEeCCCCCCc----ceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC
Confidence 456899999999887 3333 33566 99999999996 5 456666889999999999998 9999877 5678
Q ss_pred CCCCCCeeeeeCCCCcccchhhhcCcCCC---EEEccCC-cCcccch-hccccccCc-EEEeeccCCCCC
Q 042413 269 NLYLLKYLKLNIPSLKCLHSLLCTLLNLE---TLEMPSS-YIDQSPH-DIWMMQKLM-HLYFYCISPCTS 332 (350)
Q Consensus 269 ~l~~L~~L~l~~~~l~~lP~~i~~l~~L~---~L~l~~~-~l~~lP~-~i~~L~~L~-~L~l~~~~~~~~ 332 (350)
.+++|++|++++|.++.+|. ++.+.+|+ +|++++| .+..+|. .+..+++|+ .|++++|.....
T Consensus 103 ~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i 171 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV 171 (239)
T ss_dssp CCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE
T ss_pred CCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc
Confidence 99999999999999999997 88888888 9999999 9999987 488999999 999998866543
No 63
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=3.1e-12 Score=108.16 Aligned_cols=106 Identities=19% Similarity=0.190 Sum_probs=88.2
Q ss_pred CeeEEEEecCCCCCCCccchH-HHhcCCceeeEEEccCCCCCcC-ccccCCCCCCCeeeeeCCCCcccchh-hhcCcCCC
Q 042413 221 YLQSFLNHSSKNNHLNSKDYE-NFFKRFKYLRVLNLGSAVLDQY-PSGLENLYLLKYLKLNIPSLKCLHSL-LCTLLNLE 297 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~l~~lP~~-i~~l~~L~ 297 (350)
+++.|.+.++.. ....+ ..|..+++|++|+|++|.++.+ |..++.+++|++|+|++|.++.+|+. ++.+++|+
T Consensus 30 ~l~~L~l~~n~i----~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 105 (192)
T 1w8a_A 30 HTTELLLNDNEL----GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLK 105 (192)
T ss_dssp TCSEEECCSCCC----CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCC
T ss_pred CCCEEECCCCcC----CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence 888999988876 33333 2478899999999999999866 67899999999999999999977654 78899999
Q ss_pred EEEccCCcCccc-chhccccccCcEEEeeccCCC
Q 042413 298 TLEMPSSYIDQS-PHDIWMMQKLMHLYFYCISPC 330 (350)
Q Consensus 298 ~L~l~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~ 330 (350)
+|++++|.+..+ |..+..+++|++|++++|...
T Consensus 106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp EEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred EEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999999977766 668889999999999888543
No 64
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.31 E-value=2.2e-12 Score=132.50 Aligned_cols=127 Identities=12% Similarity=0.090 Sum_probs=79.3
Q ss_pred CCeeEEEEecCcc-c------------------hhhcc---CCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEE
Q 042413 197 ANVKRCFILKDLI-D------------------FFSSL---KHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLN 254 (350)
Q Consensus 197 ~~~r~L~l~~~~~-~------------------~~~~~---~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 254 (350)
.+++.|.+..+.. . +|... .++ +|+.|.+.++.. ....|..+.++++|+.|+
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~--~L~~L~Ls~N~l----~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK--DLTDVELYNCPN----MTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT--TCCEEEEESCTT----CCSCCGGGGGCSSCCEEE
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC--CCCEEECcCCCC----CccChHHHhCCCCCCEEE
Confidence 5677777777766 2 34433 344 777777777765 233445666666666666
Q ss_pred ccCCC-CCc--CccccCCCC-------CCCeeeeeCCCCcccch--hhhcCcCCCEEEccCCcCcccchhccccccCcEE
Q 042413 255 LGSAV-LDQ--YPSGLENLY-------LLKYLKLNIPSLKCLHS--LLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHL 322 (350)
Q Consensus 255 L~~~~-l~~--lp~~i~~l~-------~L~~L~l~~~~l~~lP~--~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L 322 (350)
|++|. ++. +|..++.+. +|++|++++|.+..+|. .++++++|++|++++|.+..+| .++.+++|+.|
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L 600 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDL 600 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEE
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEE
Confidence 66665 553 565554444 66666666666666666 6666666666666666555666 56666666666
Q ss_pred EeeccCCC
Q 042413 323 YFYCISPC 330 (350)
Q Consensus 323 ~l~~~~~~ 330 (350)
++++|...
T Consensus 601 ~Ls~N~l~ 608 (876)
T 4ecn_A 601 KLDYNQIE 608 (876)
T ss_dssp ECCSSCCS
T ss_pred ECcCCccc
Confidence 66666544
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.31 E-value=1.7e-12 Score=118.51 Aligned_cols=127 Identities=13% Similarity=-0.004 Sum_probs=81.6
Q ss_pred CCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCccchHHH-hcCCceeeEEEccCCCCCcCccccCCCCC
Q 042413 197 ANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENF-FKRFKYLRVLNLGSAVLDQYPSGLENLYL 272 (350)
Q Consensus 197 ~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~~~l~~lp~~i~~l~~ 272 (350)
..++.|.+..+.. ..+. ...++ +|+.|.+.++.. ....+.. +..+++|++|+|++|.++.+|.. ..+++
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~--~L~~L~Ls~N~l----~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~ 192 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRS--RVQYLDLKLNEI----DTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAK 192 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGS--SEEEEECTTSCC----CEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTT
T ss_pred CCCCEEECCCCCCCCccchhhhccC--CCCEEECCCCCC----CcccHHHHhhccCcCCEEECCCCcCcccccc-ccccc
Confidence 3456666666655 2211 12334 677777766665 2232333 34567777777777777766533 34777
Q ss_pred CCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCC
Q 042413 273 LKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPC 330 (350)
Q Consensus 273 L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~ 330 (350)
|++|++++|.++.+|+.+..+++|+.|++++|.+..+|..+..+++|+.|++++|...
T Consensus 193 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 193 LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred CCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 7777777777777777777777777777777777777777777777777777776554
No 66
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.31 E-value=6.3e-12 Score=129.55 Aligned_cols=133 Identities=20% Similarity=0.159 Sum_probs=108.9
Q ss_pred CCCCeeEEEEecCcc-ch--hhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCC
Q 042413 195 SLANVKRCFILKDLI-DF--FSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENL 270 (350)
Q Consensus 195 ~~~~~r~L~l~~~~~-~~--~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l 270 (350)
.+..+++|.+..+.+ .. .....++ +|+.|.+.++.. ...+.+..|.++++|++|+|++|.+..+ |..++++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~--~L~~LdLs~n~~---~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l 96 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLE--QLQLLELGSQYT---PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCC--SCSEEEECTTCC---CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccc--cCeEEeCCCCCC---ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence 467899999999887 22 2234566 999999998855 2455577899999999999999998855 8899999
Q ss_pred CCCCeeeeeCCCCcc-cchh--hhcCcCCCEEEccCCcCcccc--hhccccccCcEEEeeccCCCCC
Q 042413 271 YLLKYLKLNIPSLKC-LHSL--LCTLLNLETLEMPSSYIDQSP--HDIWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 271 ~~L~~L~l~~~~l~~-lP~~--i~~l~~L~~L~l~~~~l~~lP--~~i~~L~~L~~L~l~~~~~~~~ 332 (350)
++|++|+|++|.+.. +|.. ++++++|++|++++|.+..++ ..++++++|++|++++|.....
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 999999999999874 5665 889999999999999777663 5799999999999999876554
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.31 E-value=3.4e-12 Score=116.48 Aligned_cols=141 Identities=11% Similarity=0.002 Sum_probs=108.8
Q ss_pred CCeeEEEEecCccchhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-cccc-CCCCCCC
Q 042413 197 ANVKRCFILKDLIDFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGL-ENLYLLK 274 (350)
Q Consensus 197 ~~~r~L~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i-~~l~~L~ 274 (350)
..++.|.+..+.+.......++ +|+.|.+.++.. ....+..+..+++|++|++++|.++.+ |..+ ..+++|+
T Consensus 99 ~~L~~L~l~~n~l~~~~~~~~~--~L~~L~l~~N~l----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCSRGQ--GKKNIYLANNKI----TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (317)
T ss_dssp TTCCEEECCSSCCSEEEECCCS--SCEEEECCSSCC----CSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred CCcCEEECCCCccCCcCccccC--CCCEEECCCCCC----CCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCC
Confidence 4566666666665222233455 899999988887 445556788899999999999999865 4555 4789999
Q ss_pred eeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413 275 YLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA 347 (350)
Q Consensus 275 ~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~ 347 (350)
+|++++|.++.+|.. ..+++|++|++++|.+..+|..+..+++|++|++++|.....+ ..+..+++|+.
T Consensus 173 ~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~---~~~~~l~~L~~ 241 (317)
T 3o53_A 173 HLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE---KALRFSQNLEH 241 (317)
T ss_dssp EEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEEC---TTCCCCTTCCE
T ss_pred EEECCCCcCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchh---hHhhcCCCCCE
Confidence 999999999988754 4599999999999999999999999999999999999776543 34444444443
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.31 E-value=6.5e-12 Score=119.81 Aligned_cols=130 Identities=22% Similarity=0.173 Sum_probs=92.6
Q ss_pred CCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCC
Q 042413 197 ANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLL 273 (350)
Q Consensus 197 ~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L 273 (350)
.+++.|.+..+.+ ..+. ...++ +|+.|.+.++.. .....+..|.++++|+.|+|++|.++.+| .+..+++|
T Consensus 136 ~~L~~L~L~~N~i~~~~~~~~~~l~--~L~~L~l~~~~~---l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L 209 (440)
T 3zyj_A 136 SKLKELWLRNNPIESIPSYAFNRIP--SLRRLDLGELKR---LSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKL 209 (440)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCT--TCCEEECCCCTT---CCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSC
T ss_pred ccCceeeCCCCcccccCHHHhhhCc--ccCEeCCCCCCC---cceeCcchhhcccccCeecCCCCcCcccc-ccCCCccc
Confidence 4566666666555 2222 22334 666666665433 23444556778888888888888888887 47788888
Q ss_pred CeeeeeCCCCccc-chhhhcCcCCCEEEccCCcCcccc-hhccccccCcEEEeeccCCCCC
Q 042413 274 KYLKLNIPSLKCL-HSLLCTLLNLETLEMPSSYIDQSP-HDIWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 274 ~~L~l~~~~l~~l-P~~i~~l~~L~~L~l~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~ 332 (350)
++|+|++|.++.+ |..+..+++|+.|++++|.+..++ ..+..+++|++|++++|.....
T Consensus 210 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 270 (440)
T 3zyj_A 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270 (440)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred CEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence 8888888888866 667788888888888888777764 4678888899999988876655
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.31 E-value=2.2e-12 Score=116.85 Aligned_cols=130 Identities=18% Similarity=0.148 Sum_probs=96.3
Q ss_pred CCeeEEEEecCcc-chhh-ccCCCCCCeeEEEEecCCCCCCCccchH-HHhcCCceeeEEEccCCCCC-cCccccCCCCC
Q 042413 197 ANVKRCFILKDLI-DFFS-SLKHSDMYLQSFLNHSSKNNHLNSKDYE-NFFKRFKYLRVLNLGSAVLD-QYPSGLENLYL 272 (350)
Q Consensus 197 ~~~r~L~l~~~~~-~~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~ 272 (350)
..+++|.+..+.. ..+. ...++ +|+.|.+.++.. ..... ..+..+++|++|++++|.+. ..|..++.+++
T Consensus 78 ~~L~~L~Ls~n~i~~l~~~~~~l~--~L~~L~l~~n~l----~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 151 (306)
T 2z66_A 78 TSLKYLDLSFNGVITMSSNFLGLE--QLEHLDFQHSNL----KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151 (306)
T ss_dssp SCCCEEECCSCSEEEEEEEEETCT--TCCEEECTTSEE----ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTT
T ss_pred cccCEEECCCCccccChhhcCCCC--CCCEEECCCCcc----cccccchhhhhccCCCEEECCCCcCCccchhhcccCcC
Confidence 4566666666655 2222 23455 777777777665 22222 46778888999999988877 44566788899
Q ss_pred CCeeeeeCCCCcc--cchhhhcCcCCCEEEccCCcCccc-chhccccccCcEEEeeccCCCCC
Q 042413 273 LKYLKLNIPSLKC--LHSLLCTLLNLETLEMPSSYIDQS-PHDIWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 273 L~~L~l~~~~l~~--lP~~i~~l~~L~~L~l~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~ 332 (350)
|++|++++|.+.. +|..++.+++|++|++++|.+..+ |..+..+++|++|++++|.....
T Consensus 152 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 214 (306)
T 2z66_A 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214 (306)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC
T ss_pred CCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc
Confidence 9999999988874 788888999999999999987777 56788899999999988876654
No 70
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.31 E-value=4.4e-12 Score=121.40 Aligned_cols=88 Identities=19% Similarity=0.186 Sum_probs=44.9
Q ss_pred hcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCccc-chhhhcCcCCCEEEccCCcCccc-chhccccccCcE
Q 042413 244 FKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCL-HSLLCTLLNLETLEMPSSYIDQS-PHDIWMMQKLMH 321 (350)
Q Consensus 244 ~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~l-P~~i~~l~~L~~L~l~~~~l~~l-P~~i~~L~~L~~ 321 (350)
|..+++|+.|+|++|.++.+| .+..+++|++|++++|.++.+ |..+..+++|+.|++++|.+..+ |..+..+++|+.
T Consensus 192 ~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 270 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270 (452)
T ss_dssp TTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCE
Confidence 334444444444444444443 244455555555555555533 44455555555555555544444 334555666666
Q ss_pred EEeeccCCCCC
Q 042413 322 LYFYCISPCTS 332 (350)
Q Consensus 322 L~l~~~~~~~~ 332 (350)
|++++|.....
T Consensus 271 L~L~~N~l~~~ 281 (452)
T 3zyi_A 271 LNLAHNNLSSL 281 (452)
T ss_dssp EECCSSCCSCC
T ss_pred EECCCCcCCcc
Confidence 66666554433
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.31 E-value=3.3e-12 Score=123.54 Aligned_cols=104 Identities=13% Similarity=-0.004 Sum_probs=57.8
Q ss_pred CeeEEEEecCCCCCCCccchHHHh-cCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFF-KRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETL 299 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L 299 (350)
+|+.|.+.++.. ....+..+ ..+++|+.|+|++|.++.+|. ...+++|++|+|++|.++.+|+.++.+++|+.|
T Consensus 145 ~L~~L~Ls~N~l----~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L 219 (487)
T 3oja_A 145 RVQYLDLKLNEI----DTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWI 219 (487)
T ss_dssp SEEEEECTTSCC----CEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEE
T ss_pred CCCEEECCCCCC----CCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEE
Confidence 555555555554 22222333 245556666666666554443 224556666666666666665556666666666
Q ss_pred EccCCcCcccchhccccccCcEEEeeccCC
Q 042413 300 EMPSSYIDQSPHDIWMMQKLMHLYFYCISP 329 (350)
Q Consensus 300 ~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 329 (350)
++++|.+..+|..++.+++|+.|++++|..
T Consensus 220 ~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 220 SLRNNKLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp ECTTSCCCEECTTCCCCTTCCEEECTTCCB
T ss_pred EecCCcCcccchhhccCCCCCEEEcCCCCC
Confidence 666665555666666666666666655543
No 72
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.31 E-value=5.4e-12 Score=115.73 Aligned_cols=126 Identities=17% Similarity=0.121 Sum_probs=73.2
Q ss_pred CCeeEEEEecCcc-chh--hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCC
Q 042413 197 ANVKRCFILKDLI-DFF--SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLL 273 (350)
Q Consensus 197 ~~~r~L~l~~~~~-~~~--~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L 273 (350)
..++.|.+..+.+ ..+ ....++ +|+.|.+.++.. ....+..+.++++|++|++++|.++.+|..+. ++|
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~--~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L 125 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQ--HLYALVLVNNKI----SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSL 125 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCT--TCCEEECCSSCC----CEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCC--CCcEEECCCCcc----CccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccC
Confidence 4566666666555 221 122344 666666666654 33445556666666666666666666665554 566
Q ss_pred CeeeeeCCCCcccchh-hhcCcCCCEEEccCCcCc---ccchhccccccCcEEEeeccCCCC
Q 042413 274 KYLKLNIPSLKCLHSL-LCTLLNLETLEMPSSYID---QSPHDIWMMQKLMHLYFYCISPCT 331 (350)
Q Consensus 274 ~~L~l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~---~lP~~i~~L~~L~~L~l~~~~~~~ 331 (350)
++|++++|.+..+|.. ++.+++|++|++++|.+. ..|..+..+ +|++|++++|....
T Consensus 126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 6666666666666543 566666666666666543 334455555 66666666665444
No 73
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.31 E-value=1.2e-11 Score=126.97 Aligned_cols=122 Identities=13% Similarity=0.120 Sum_probs=87.6
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCC--------CCCCeeeeeCCCCcccchhhh-
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENL--------YLLKYLKLNIPSLKCLHSLLC- 291 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l--------~~L~~L~l~~~~l~~lP~~i~- 291 (350)
+|+.|.+.++.. ..++...+..+++|+.|+|++|.++.+|..+... ++|++|+|++|.++.+|..+.
T Consensus 674 ~L~~L~Ls~N~L----~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~ 749 (876)
T 4ecn_A 674 NASTVTLSYNEI----QKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749 (876)
T ss_dssp CEEEEECCSSCC----CSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST
T ss_pred CcCEEEccCCcC----CccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhh
Confidence 677777777665 3455556667888888888888888777765543 278888888888888888876
Q ss_pred -cCcCCCEEEccCCcCcccchhccccccCcEEEeeccC------CCCCCCCccccccccccccc
Q 042413 292 -TLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCIS------PCTSKNYSSSLKNLIFISAL 348 (350)
Q Consensus 292 -~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~------~~~~~~~~~~l~~L~~L~~L 348 (350)
.+++|+.|++++|.+..+|..++.+++|+.|++++|. ..+. .|..+.++++|+.|
T Consensus 750 ~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~--ip~~l~~L~~L~~L 811 (876)
T 4ecn_A 750 TTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ--WPTGITTCPSLIQL 811 (876)
T ss_dssp TTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCC--CCTTGGGCSSCCEE
T ss_pred ccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCccccccccc--ChHHHhcCCCCCEE
Confidence 8888888888888777788888888888888887632 2222 45555555555544
No 74
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.30 E-value=9.6e-12 Score=124.22 Aligned_cols=122 Identities=17% Similarity=0.136 Sum_probs=84.9
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCC--------CCCCeeeeeCCCCcccchhhh-
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENL--------YLLKYLKLNIPSLKCLHSLLC- 291 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l--------~~L~~L~l~~~~l~~lP~~i~- 291 (350)
+|+.|.+.++.. ..++...+..+++|+.|+|++|.++.+|..+... ++|++|++++|.++.+|..+.
T Consensus 434 ~L~~L~Ls~N~l----~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 509 (636)
T 4eco_A 434 NVSSINLSNNQI----SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA 509 (636)
T ss_dssp CEEEEECCSSCC----CSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGST
T ss_pred CCCEEECcCCcc----CcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhh
Confidence 777777777765 3455566677788888888888877777654432 278888888888888887776
Q ss_pred -cCcCCCEEEccCCcCcccchhccccccCcEEEeeccC------CCCCCCCccccccccccccc
Q 042413 292 -TLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCIS------PCTSKNYSSSLKNLIFISAL 348 (350)
Q Consensus 292 -~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~------~~~~~~~~~~l~~L~~L~~L 348 (350)
.+++|++|++++|.+..+|..++++++|+.|++++|. ..+. .|..+.++++|+.|
T Consensus 510 ~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~--~p~~l~~l~~L~~L 571 (636)
T 4eco_A 510 TTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLRE--WPEGITLCPSLTQL 571 (636)
T ss_dssp TTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCC--CCTTGGGCSSCCEE
T ss_pred ccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCccccc--ChHHHhcCCCCCEE
Confidence 7888888888888777788888888888888885432 2222 44455555555543
No 75
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.30 E-value=5.5e-12 Score=120.49 Aligned_cols=133 Identities=20% Similarity=0.118 Sum_probs=109.1
Q ss_pred CCCCeeEEEEecCcc-ch-h-hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCC
Q 042413 195 SLANVKRCFILKDLI-DF-F-SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENL 270 (350)
Q Consensus 195 ~~~~~r~L~l~~~~~-~~-~-~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l 270 (350)
.+..+++|.+..+.+ .. + ....++ +|++|.+.++.. .....+..|.++++|++|+|++|.++.+ |..++++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~L~~n~~---~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 102 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQ--DLQFLKVEQQTP---GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL 102 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCT--TCCEEECCCCST---TCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTC
T ss_pred CCCccCEEEecCCccCcCChhHhccCc--cccEEECcCCcc---cceECcccccccccCCEEeCCCCccCccChhhccCc
Confidence 357899999998887 22 2 234566 999999999876 2345567789999999999999998855 7889999
Q ss_pred CCCCeeeeeCCCCcc-cchh--hhcCcCCCEEEccCCcCccc-chh-ccccccCcEEEeeccCCCCC
Q 042413 271 YLLKYLKLNIPSLKC-LHSL--LCTLLNLETLEMPSSYIDQS-PHD-IWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 271 ~~L~~L~l~~~~l~~-lP~~--i~~l~~L~~L~l~~~~l~~l-P~~-i~~L~~L~~L~l~~~~~~~~ 332 (350)
++|++|++++|.++. +|.. ++.+++|++|++++|.+..+ |.. ++.+++|++|++++|.....
T Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 999999999999984 5555 88999999999999988777 555 88999999999999876554
No 76
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.30 E-value=4.8e-12 Score=117.11 Aligned_cols=122 Identities=18% Similarity=0.110 Sum_probs=101.4
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCCCCCCeeeeeCCCCcccchh-hhcCcCCCE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENLYLLKYLKLNIPSLKCLHSL-LCTLLNLET 298 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~l~~lP~~-i~~l~~L~~ 298 (350)
+++.|.+.++.. ....+..+.++++|+.|++++|.++.+ |..++++++|++|++++|.++.+|.. ++.+++|++
T Consensus 53 ~L~~L~l~~n~i----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 53 AVKSLDLSNNRI----TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp TCCEEECTTSCC----CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSE
T ss_pred cCcEEECCCCcC----cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCE
Confidence 899999999887 456666889999999999999999966 46799999999999999999999887 799999999
Q ss_pred EEccCCcCcccch--hccccccCcEEEeeccC-CCCCCCCccccccccccccc
Q 042413 299 LEMPSSYIDQSPH--DIWMMQKLMHLYFYCIS-PCTSKNYSSSLKNLIFISAL 348 (350)
Q Consensus 299 L~l~~~~l~~lP~--~i~~L~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~~L 348 (350)
|++++|.+..+|. .+..+++|++|++++|. .... .+..+.++++|+.|
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~l~~L~~L 179 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI--QRKDFAGLTFLEEL 179 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE--CTTTTTTCCEEEEE
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCcccccc--CHHHccCCCCCCEE
Confidence 9999999999987 78899999999999984 3332 22334444444443
No 77
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.29 E-value=6.6e-12 Score=120.87 Aligned_cols=129 Identities=18% Similarity=0.105 Sum_probs=75.3
Q ss_pred CCCeeEEEEecCcc-chh--hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcc-ccCCCC
Q 042413 196 LANVKRCFILKDLI-DFF--SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPS-GLENLY 271 (350)
Q Consensus 196 ~~~~r~L~l~~~~~-~~~--~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~ 271 (350)
+..++.|.+..+.+ ..+ ....++ +|+.|.+.++.. ....+..|.++++|++|+|++|.++.+|. .+++++
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~i----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 104 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFP--HLEELELNENIV----SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS 104 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCT--TCCEEECTTSCC----CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT
T ss_pred CCCCcEEECCCCccceECHhHccCCC--CCCEEECCCCcc----CEeChhhhhCCccCCEEECCCCcCCccCcccccCCC
Confidence 45667777766665 221 223444 677777766654 33445566666667777776666666654 345666
Q ss_pred CCCeeeeeCCCCccc-chhhhcCcCCCEEEccCCcCcccc-hhccccccCcEEEeeccCCC
Q 042413 272 LLKYLKLNIPSLKCL-HSLLCTLLNLETLEMPSSYIDQSP-HDIWMMQKLMHLYFYCISPC 330 (350)
Q Consensus 272 ~L~~L~l~~~~l~~l-P~~i~~l~~L~~L~l~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~ 330 (350)
+|++|++++|.+..+ |..+..+++|++|++++|.+..++ ..+..+++|++|++++|...
T Consensus 105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence 666666666666544 345566666666666666554442 35555666666666555443
No 78
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.29 E-value=6.1e-12 Score=115.26 Aligned_cols=129 Identities=15% Similarity=0.102 Sum_probs=98.5
Q ss_pred CCCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCC
Q 042413 196 LANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYL 272 (350)
Q Consensus 196 ~~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~ 272 (350)
+..++.|.+..+.+ ..+. ...++ +|++|.+.++.. ....+..+..+++|++|++++|.++.+|..+. ++
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~--~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~ 122 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLK--NLHTLILINNKI----SKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KT 122 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCT--TCCEEECCSSCC----CCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TT
T ss_pred CCCCeEEECCCCcCCEeChhhhccCC--CCCEEECCCCcC----CeeCHHHhcCCCCCCEEECCCCcCCccChhhc--cc
Confidence 46778888887776 3322 33455 888888888776 44556778888889999998888888887665 68
Q ss_pred CCeeeeeCCCCcccch-hhhcCcCCCEEEccCCcCc---ccchhccccccCcEEEeeccCCCCC
Q 042413 273 LKYLKLNIPSLKCLHS-LLCTLLNLETLEMPSSYID---QSPHDIWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 273 L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~~~l~---~lP~~i~~L~~L~~L~l~~~~~~~~ 332 (350)
|++|++++|.+..+|. .++.+++|++|++++|.+. ..|..+..+++|++|++++|.....
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 8888998888887765 4688889999999888664 4566788888999999988866554
No 79
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.29 E-value=1.7e-12 Score=129.61 Aligned_cols=106 Identities=15% Similarity=0.212 Sum_probs=66.3
Q ss_pred CeeEEEEecCC-CCCCCcc-chHHHhcCC------ceeeEEEccCCCCCcCcc--ccCCCCCCCeeeeeCCCCc-ccchh
Q 042413 221 YLQSFLNHSSK-NNHLNSK-DYENFFKRF------KYLRVLNLGSAVLDQYPS--GLENLYLLKYLKLNIPSLK-CLHSL 289 (350)
Q Consensus 221 ~Lr~L~~~~~~-~~~~~~~-~~~~~~~~l------~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~l~-~lP~~ 289 (350)
+|+.|.+.++. . .. ..|..+..+ ++|++|++++|.++.+|. .++.+++|++|++++|.+. .+| .
T Consensus 274 ~L~~L~Ls~n~~l----~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 274 EMQLINVACNRGI----SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp SCCEEECTTCTTS----CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred CCCEEECcCCCCC----ccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 55555555554 2 22 334444443 666666666666666666 6666666666666666666 666 6
Q ss_pred hhcCcCCCEEEccCCcCcccchhcccccc-CcEEEeeccCCCC
Q 042413 290 LCTLLNLETLEMPSSYIDQSPHDIWMMQK-LMHLYFYCISPCT 331 (350)
Q Consensus 290 i~~l~~L~~L~l~~~~l~~lP~~i~~L~~-L~~L~l~~~~~~~ 331 (350)
++.+++|++|++++|.+..+|..++.+++ |++|++++|....
T Consensus 349 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~ 391 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391 (636)
T ss_dssp CEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS
T ss_pred hCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc
Confidence 66666677777766666667766777776 7777777665553
No 80
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.29 E-value=7.9e-12 Score=123.80 Aligned_cols=137 Identities=22% Similarity=0.245 Sum_probs=107.6
Q ss_pred CCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCC
Q 042413 196 LANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLK 274 (350)
Q Consensus 196 ~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~ 274 (350)
...++.|.+..+.+ ..+....++ +|+.|.+.++... . + +.+..+++|+.|+|++|.+..+| .+..+++|+
T Consensus 64 l~~L~~L~Ls~N~l~~~~~l~~l~--~L~~L~Ls~N~l~----~-l-~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~ 134 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKPLTNLK--NLGWLFLDENKIK----D-L-SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLE 134 (605)
T ss_dssp CTTCCEEECTTSCCCCCGGGGGCT--TCCEEECCSSCCC----C-C-TTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCS
T ss_pred CCCCCEEEeeCCCCCCChhhccCC--CCCEEECcCCCCC----C-C-hhhccCCCCCEEEecCCCCCCCc-cccCCCccC
Confidence 46788888888877 444455666 9999999888763 2 2 36788999999999999988775 588899999
Q ss_pred eeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413 275 YLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA 347 (350)
Q Consensus 275 ~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~ 347 (350)
.|+|++|.+..+ +.++.+++|+.|+|++|.+..++. +..+++|++|++++|.+... +.+.+|++|+.
T Consensus 135 ~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l----~~l~~l~~L~~ 201 (605)
T 1m9s_A 135 SLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL----RALAGLKNLDV 201 (605)
T ss_dssp EEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC----GGGTTCTTCSE
T ss_pred EEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC----hHHccCCCCCE
Confidence 999999999888 568899999999999998888877 88999999999998866553 23444444443
No 81
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.29 E-value=1.3e-11 Score=104.43 Aligned_cols=104 Identities=16% Similarity=0.212 Sum_probs=91.3
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCcccch-hhhcCcCCCE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLET 298 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~~ 298 (350)
+++.|.+.++... . ++..|.++++|+.|+|++|.++.++ ..+..+++|++|+|++|.++.+|+ .++.+++|++
T Consensus 32 ~l~~L~L~~n~i~----~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~ 106 (193)
T 2wfh_A 32 DVTELYLDGNQFT----L-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRL 106 (193)
T ss_dssp TCCEEECCSSCCC----S-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred CCCEEECCCCcCc----h-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCE
Confidence 8999999998873 2 3368899999999999999999776 568999999999999999998865 6899999999
Q ss_pred EEccCCcCcccch-hccccccCcEEEeeccCC
Q 042413 299 LEMPSSYIDQSPH-DIWMMQKLMHLYFYCISP 329 (350)
Q Consensus 299 L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~ 329 (350)
|++++|.+..+|. .+..+++|++|++++|..
T Consensus 107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 107 LSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred EECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 9999999999988 478899999999998753
No 82
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.28 E-value=3.7e-12 Score=107.63 Aligned_cols=98 Identities=17% Similarity=0.166 Sum_probs=82.4
Q ss_pred eeeEEEccCCCCCcCccc--cCCCCCCCeeeeeCCCCccc-chhhhcCcCCCEEEccCCcCcccch-hccccccCcEEEe
Q 042413 249 YLRVLNLGSAVLDQYPSG--LENLYLLKYLKLNIPSLKCL-HSLLCTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYF 324 (350)
Q Consensus 249 ~L~~L~L~~~~l~~lp~~--i~~l~~L~~L~l~~~~l~~l-P~~i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l 324 (350)
.|+.|++++|.++.+|.. ++.+++|++|+|++|.++.+ |..++.+++|++|++++|.+..+|. .+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 899999999999988764 88999999999999999977 7789999999999999998888876 4889999999999
Q ss_pred eccCCCCCCCCccccccccccccc
Q 042413 325 YCISPCTSKNYSSSLKNLIFISAL 348 (350)
Q Consensus 325 ~~~~~~~~~~~~~~l~~L~~L~~L 348 (350)
++|...+. .+..+..+++|+.|
T Consensus 110 ~~N~l~~~--~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 110 YDNQISCV--MPGSFEHLNSLTSL 131 (192)
T ss_dssp CSSCCCEE--CTTSSTTCTTCCEE
T ss_pred CCCcCCee--CHHHhhcCCCCCEE
Confidence 99987665 34444555555443
No 83
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.28 E-value=5.2e-12 Score=128.84 Aligned_cols=143 Identities=17% Similarity=0.111 Sum_probs=87.8
Q ss_pred CCeeEEEEecCcc--chhh-ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC-cCccccCCCCC
Q 042413 197 ANVKRCFILKDLI--DFFS-SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD-QYPSGLENLYL 272 (350)
Q Consensus 197 ~~~r~L~l~~~~~--~~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~ 272 (350)
..++.|.+..+.. ..+. ...++ +|+.|.+.++.. ....+..+..+++|+.|++++|.+. .+|..++.+++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~Ls~N~l----~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 467 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCS--ELVSLHLSFNYL----SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCT--TCCEEECCSSEE----ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred CCccEEECCCCccccccCHHHhcCC--CCCEEECcCCcc----cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence 3466666665554 2222 22444 677776666654 3344556666777777777777766 56666777777
Q ss_pred CCeeeeeCCCCc-ccchhhhcCcCCCEEEccCCcCc-ccchhccccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413 273 LKYLKLNIPSLK-CLHSLLCTLLNLETLEMPSSYID-QSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA 347 (350)
Q Consensus 273 L~~L~l~~~~l~-~lP~~i~~l~~L~~L~l~~~~l~-~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~ 347 (350)
|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..++.+++|++|++++|...+. .|..+.++++|+.
T Consensus 468 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~l~~l~~L~~ 542 (768)
T 3rgz_A 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN--IPAELGDCRSLIW 542 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE--CCGGGGGCTTCCE
T ss_pred ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc--CCHHHcCCCCCCE
Confidence 777777777765 56666777777777777777444 6666777777777777776655433 3444444444443
No 84
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.28 E-value=7.2e-12 Score=116.44 Aligned_cols=109 Identities=21% Similarity=0.177 Sum_probs=95.7
Q ss_pred CeeEEEEecCCCCCCCccchHHHhc-CCceeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCcccch-hhhcCcCCC
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFK-RFKYLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLE 297 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~ 297 (350)
.++.|.+.++.+ ....+..+. .+++|+.|+|++|.++.++ ..+..+++|++|+|++|.++.+|. .+..+.+|+
T Consensus 40 ~l~~L~Ls~N~l----~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 40 YTALLDLSHNNL----SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115 (361)
T ss_dssp TCSEEECCSSCC----CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCEEECCCCCC----CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence 789999999987 456666676 8999999999999999776 568999999999999999998876 578999999
Q ss_pred EEEccCCcCccc-chhccccccCcEEEeeccCCCCCC
Q 042413 298 TLEMPSSYIDQS-PHDIWMMQKLMHLYFYCISPCTSK 333 (350)
Q Consensus 298 ~L~l~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~ 333 (350)
+|+|++|.+..+ |..+..+++|++|++++|.....+
T Consensus 116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence 999999988887 568999999999999999777654
No 85
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.28 E-value=5.7e-12 Score=124.95 Aligned_cols=141 Identities=15% Similarity=0.100 Sum_probs=112.2
Q ss_pred CCeeEEEEecCcc-chhhc--cCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcc-ccCCCCC
Q 042413 197 ANVKRCFILKDLI-DFFSS--LKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPS-GLENLYL 272 (350)
Q Consensus 197 ~~~r~L~l~~~~~-~~~~~--~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~ 272 (350)
..++.+.+..+.. .++.. ..++ +|++|.+.++.. ....+..|..+++|++|+|++|.++.+|. .++.+++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~--~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFR--QVELLNLNDLQI----EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCC--CCSEEECTTSCC----CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCceEEEeeCCCCCCcCHHHHccCC--CCcEEECCCCCC----CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 5678888888776 44432 3466 999999998886 55666788999999999999999987764 5689999
Q ss_pred CCeeeeeCCCCcccchhh-hcCcCCCEEEccCCcCcccch-hccccccCcEEEeeccCCCCCCCCcccccccccc
Q 042413 273 LKYLKLNIPSLKCLHSLL-CTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFI 345 (350)
Q Consensus 273 L~~L~l~~~~l~~lP~~i-~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 345 (350)
|++|+|++|.++.+|+.+ +.+++|++|++++|.+..+|+ .++.+++|++|++++|..... .+..+++|+.|
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~L 197 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHA 197 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTTCSEE
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--Chhhhhhhhhh
Confidence 999999999999998875 899999999999997777765 689999999999999876654 23444444443
No 86
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.27 E-value=7.7e-12 Score=105.83 Aligned_cols=98 Identities=16% Similarity=0.138 Sum_probs=83.2
Q ss_pred ceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccch-hhhcCcCCCEEEccCCcCcccch-hccccccCcEEEee
Q 042413 248 KYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFY 325 (350)
Q Consensus 248 ~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~ 325 (350)
+.|+.|+|++|.++.+|..+..+++|++|+|++|.++.+|. .+..+++|++|++++|.+..+|. .+..+++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 57999999999999999999999999999999999998865 58999999999999999988876 68999999999999
Q ss_pred ccCCCCCCC-Ccccccccccc
Q 042413 326 CISPCTSKN-YSSSLKNLIFI 345 (350)
Q Consensus 326 ~~~~~~~~~-~~~~l~~L~~L 345 (350)
+|.....+. .+..+.+|+.|
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L 131 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHL 131 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCCeeChhhhhcCccccEE
Confidence 998776532 23334444443
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.27 E-value=1.3e-11 Score=110.11 Aligned_cols=108 Identities=18% Similarity=0.119 Sum_probs=60.5
Q ss_pred CCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcc-ccCCCCC
Q 042413 197 ANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPS-GLENLYL 272 (350)
Q Consensus 197 ~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~ 272 (350)
..++.|.+..+.. ..+. ...++ +|++|.+.++.. ....+..+.++++|+.|++++|.+..++. .++.+++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 125 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLS--HLSTLILTGNPI----QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCT--TCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred cCCcEEECCCCcCCccCHHHccCCc--CCCEEECCCCcc----CccChhhhcCCccccEEECCCCCccccCchhcccCCC
Confidence 4566666666554 2221 22334 666666666654 33444455666666666666666554443 4556666
Q ss_pred CCeeeeeCCCCcc--cchhhhcCcCCCEEEccCCcCcccc
Q 042413 273 LKYLKLNIPSLKC--LHSLLCTLLNLETLEMPSSYIDQSP 310 (350)
Q Consensus 273 L~~L~l~~~~l~~--lP~~i~~l~~L~~L~l~~~~l~~lP 310 (350)
|++|++++|.+.. +|..++.+++|++|++++|.+..+|
T Consensus 126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 6666666666553 4556666666666666666555443
No 88
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.27 E-value=9.5e-12 Score=123.33 Aligned_cols=125 Identities=16% Similarity=0.129 Sum_probs=80.5
Q ss_pred CCeeEEEEecCcc-chh--hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccc-cCCCCC
Q 042413 197 ANVKRCFILKDLI-DFF--SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSG-LENLYL 272 (350)
Q Consensus 197 ~~~r~L~l~~~~~-~~~--~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~ 272 (350)
..++.|.+..+.+ ..+ ....++ +|++|.+.++.. ...++..|.++++|++|+|++|.++.+|.. ++.+++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 148 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAH--TIQKLYMGFNAI----RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 148 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCT--TCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCcEEECCCCCCCCCChHHhcCCC--CCCEEECCCCcC----CCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCC
Confidence 4567777766665 222 223444 777777777665 345555667777777777777777766655 367777
Q ss_pred CCeeeeeCCCCcccch-hhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCC
Q 042413 273 LKYLKLNIPSLKCLHS-LLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISP 329 (350)
Q Consensus 273 L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 329 (350)
|++|++++|.+..+|+ .++.+++|++|++++|.+..+| ++.+++|++|++++|..
T Consensus 149 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCC
T ss_pred CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcc
Confidence 7777777777765543 4677777777777777666664 44566677777766543
No 89
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.27 E-value=1.4e-11 Score=121.96 Aligned_cols=126 Identities=20% Similarity=0.170 Sum_probs=105.0
Q ss_pred CCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCC
Q 042413 196 LANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLK 274 (350)
Q Consensus 196 ~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~ 274 (350)
...+++|.+..+.+ .++....++ +|+.|.+.++... .. +.+..+++|+.|+|++|.++.+ ..++.+++|+
T Consensus 86 l~~L~~L~Ls~N~l~~l~~l~~l~--~L~~L~Ls~N~l~----~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~ 156 (605)
T 1m9s_A 86 LKNLGWLFLDENKIKDLSSLKDLK--KLKSLSLEHNGIS----DI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLD 156 (605)
T ss_dssp CTTCCEEECCSSCCCCCTTSTTCT--TCCEEECTTSCCC----CC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCS
T ss_pred CCCCCEEECcCCCCCCChhhccCC--CCCEEEecCCCCC----CC--ccccCCCccCEEECCCCccCCc-hhhcccCCCC
Confidence 46789999998887 455555666 9999999988873 22 4578899999999999999887 5788999999
Q ss_pred eeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCC
Q 042413 275 YLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 275 ~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~ 332 (350)
.|+|++|.+..+++ +..+++|+.|+|++|.+..+| .+..+++|+.|++++|.....
T Consensus 157 ~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 157 TLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECC
T ss_pred EEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCC
Confidence 99999999998877 899999999999999888886 588999999999998865543
No 90
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.27 E-value=2.7e-11 Score=111.55 Aligned_cols=124 Identities=18% Similarity=0.112 Sum_probs=68.1
Q ss_pred CCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCe
Q 042413 197 ANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKY 275 (350)
Q Consensus 197 ~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~ 275 (350)
..+++|.+..+.. ..+....++ +|++|.+.++... .. +.+..+++|++|++++|.++.+|. +..+++|++
T Consensus 66 ~~L~~L~l~~n~i~~~~~~~~l~--~L~~L~L~~n~i~----~~--~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDISPLSNLV--KLTNLYIGTNKIT----DI--SALQNLTNLRELYLNEDNISDISP-LANLTKMYS 136 (347)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCT--TCCEEECCSSCCC----CC--GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred CCccEEEccCCccccchhhhcCC--cCCEEEccCCccc----Cc--hHHcCCCcCCEEECcCCcccCchh-hccCCceeE
Confidence 4555566555544 333333444 6666666555442 11 235556666666666666655554 555666666
Q ss_pred eeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCC
Q 042413 276 LKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPC 330 (350)
Q Consensus 276 L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~ 330 (350)
|++++|.....++.++.+++|++|++++|.+..++. +..+++|++|++++|...
T Consensus 137 L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp EECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCC
T ss_pred EECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccc
Confidence 666665433223335666666666666665555554 566666666666665443
No 91
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.27 E-value=1.9e-11 Score=119.66 Aligned_cols=142 Identities=11% Similarity=0.151 Sum_probs=102.4
Q ss_pred CCeeEEEEecCccc--hhh----ccCCCCCCeeEEEEecCCCCCCCccch--HHHhcCCceeeEEEccCCCCCcCccccC
Q 042413 197 ANVKRCFILKDLID--FFS----SLKHSDMYLQSFLNHSSKNNHLNSKDY--ENFFKRFKYLRVLNLGSAVLDQYPSGLE 268 (350)
Q Consensus 197 ~~~r~L~l~~~~~~--~~~----~~~~~~~~Lr~L~~~~~~~~~~~~~~~--~~~~~~l~~L~~L~L~~~~l~~lp~~i~ 268 (350)
..++.|.+..+... .+. ...++ +|+.|.+.++.. .... ...+..+++|++|++++|.++.+|..++
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~--~L~~L~Ls~N~l----~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 407 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKNSACKGAWP--SLQTLVLSQNHL----RSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQ 407 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHHHTCTTSST--TCCEEECTTSCC----CCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCC
T ss_pred ccccEEEccCCccccccccchhhhhccc--cCcEEEccCCcc----cccccchhhhhcCCCCCEEECCCCCCccCChhhc
Confidence 45667777666652 211 22445 888888888776 2232 2568889999999999999999999888
Q ss_pred CCCCCCeeeeeCCCCcccchhhh------------------cCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCC
Q 042413 269 NLYLLKYLKLNIPSLKCLHSLLC------------------TLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPC 330 (350)
Q Consensus 269 ~l~~L~~L~l~~~~l~~lP~~i~------------------~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~ 330 (350)
.+++|++|++++|.++.+|..+. .+++|++|++++|.+..+|. .+.+++|+.|++++|...
T Consensus 408 ~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~ 486 (549)
T 2z81_A 408 WPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLK 486 (549)
T ss_dssp CCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCC
T ss_pred ccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccC
Confidence 89999999999988877765432 57788888888888888887 567888999999888776
Q ss_pred CCCCCcccccccccccc
Q 042413 331 TSKNYSSSLKNLIFISA 347 (350)
Q Consensus 331 ~~~~~~~~l~~L~~L~~ 347 (350)
+.+ +..+.++++|+.
T Consensus 487 ~~~--~~~~~~l~~L~~ 501 (549)
T 2z81_A 487 SVP--DGIFDRLTSLQK 501 (549)
T ss_dssp CCC--TTGGGGCTTCCE
T ss_pred CcC--HHHHhcCcccCE
Confidence 652 233444444443
No 92
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.25 E-value=1.9e-11 Score=111.97 Aligned_cols=144 Identities=15% Similarity=0.065 Sum_probs=83.7
Q ss_pred CCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCCCCC
Q 042413 197 ANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLK 274 (350)
Q Consensus 197 ~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~ 274 (350)
.+++.|.+..+.. .++... .+ +|+.|.+.++.. ....+..+..+++|+.|++++|.++.++ ..+..+++|+
T Consensus 171 ~~L~~L~l~~n~l~~l~~~~-~~--~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 243 (330)
T 1xku_A 171 KKLSYIRIADTNITTIPQGL-PP--SLTELHLDGNKI----TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243 (330)
T ss_dssp TTCCEEECCSSCCCSCCSSC-CT--TCSEEECTTSCC----CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCC
T ss_pred CCcCEEECCCCccccCCccc-cc--cCCEEECCCCcC----CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCC
Confidence 4455555555554 222211 13 666666666654 3344456667777777777777766544 3566677777
Q ss_pred eeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchh-cc------ccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413 275 YLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHD-IW------MMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA 347 (350)
Q Consensus 275 ~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~-i~------~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~ 347 (350)
+|++++|.+..+|..+..+++|++|++++|.+..+|.. +. ...+|+.|++++|........+..+..+.+|+.
T Consensus 244 ~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~ 323 (330)
T 1xku_A 244 ELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323 (330)
T ss_dssp EEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred EEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeE
Confidence 77777777777777777777777777777766666652 21 235666777766654332122334444444443
No 93
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.25 E-value=1.1e-11 Score=119.17 Aligned_cols=108 Identities=19% Similarity=0.119 Sum_probs=95.8
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCCCCCCeeeeeCCCCcccchh-hhcCcCCCE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENLYLLKYLKLNIPSLKCLHSL-LCTLLNLET 298 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~l~~lP~~-i~~l~~L~~ 298 (350)
+++.|.+.++.. ....+..|.++++|++|+|++|.++.+ |..++++++|++|+|++|.++.+|.. ++.+++|++
T Consensus 33 ~l~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 33 ETRLLDLGKNRI----KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp TCSEEECCSSCC----CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred CCcEEECCCCcc----ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence 899999999987 556677899999999999999999965 78899999999999999999999875 589999999
Q ss_pred EEccCCcCccc-chhccccccCcEEEeeccCCCCC
Q 042413 299 LEMPSSYIDQS-PHDIWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 299 L~l~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~ 332 (350)
|++++|.+..+ |..+..+++|++|++++|.....
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 143 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI 143 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE
T ss_pred EECCCCccccCChhHccccccCCEEECCCCcccee
Confidence 99999977776 55899999999999999876544
No 94
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.24 E-value=5.6e-12 Score=121.95 Aligned_cols=141 Identities=11% Similarity=-0.004 Sum_probs=112.8
Q ss_pred CCeeEEEEecCccchhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCc-CccccC-CCCCCC
Q 042413 197 ANVKRCFILKDLIDFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQ-YPSGLE-NLYLLK 274 (350)
Q Consensus 197 ~~~r~L~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~i~-~l~~L~ 274 (350)
..++.|.+..+.+.......++ +|+.|.+.++.. ....+..+..+++|+.|+|++|.++. .|..+. .+++|+
T Consensus 99 ~~L~~L~L~~N~l~~~~~~~l~--~L~~L~L~~N~l----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCSRGQ--GKKNIYLANNKI----TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (487)
T ss_dssp TTCCEEECCSSCCCCEEECCCS--SCEEEECCSSCC----CSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred CCcCEEECcCCcCCCCCccccC--CCCEEECCCCCC----CCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence 5678888888777333333456 999999999987 45666778889999999999999985 566665 799999
Q ss_pred eeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCccccccccc
Q 042413 275 YLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIF 344 (350)
Q Consensus 275 ~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 344 (350)
+|+|++|.++.+|. ...+++|++|++++|.+..+|+.++.+++|+.|++++|.....+..+..+++|+.
T Consensus 173 ~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~ 241 (487)
T 3oja_A 173 HLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241 (487)
T ss_dssp EEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCE
T ss_pred EEecCCCccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCE
Confidence 99999999998876 4469999999999999999999999999999999999977754433333333433
No 95
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.24 E-value=1.7e-11 Score=117.05 Aligned_cols=107 Identities=18% Similarity=0.138 Sum_probs=59.5
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCCCCCCeeeeeCCCCccc-chhhhcCcCCCE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENLYLLKYLKLNIPSLKCL-HSLLCTLLNLET 298 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~l~~l-P~~i~~l~~L~~ 298 (350)
+++.|.+.++.. ....+..+..+++|+.|++++|.++.+ |..++.+++|++|++++|.++.+ |..++.+++|++
T Consensus 276 ~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 351 (455)
T 3v47_A 276 GVKTCDLSKSKI----FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV 351 (455)
T ss_dssp CCCEEECCSSCC----CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred CceEEEecCccc----cccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCE
Confidence 455555555443 233444555566666666666665533 34555666666666666665544 344555666666
Q ss_pred EEccCCcCccc-chhccccccCcEEEeeccCCCC
Q 042413 299 LEMPSSYIDQS-PHDIWMMQKLMHLYFYCISPCT 331 (350)
Q Consensus 299 L~l~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~ 331 (350)
|++++|.+..+ |..++.+++|++|++++|....
T Consensus 352 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred EECCCCcccccChhhccccccccEEECCCCcccc
Confidence 66666655544 4455566666666666555444
No 96
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.24 E-value=1.2e-11 Score=124.29 Aligned_cols=132 Identities=17% Similarity=0.100 Sum_probs=110.8
Q ss_pred CCCCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcc-ccCCC
Q 042413 195 SLANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPS-GLENL 270 (350)
Q Consensus 195 ~~~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l 270 (350)
.+.++++|.+..+.. ..+. ...++ +|++|.+.++.. ....+..|.++++|++|+|++|.++.+|. .++++
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 96 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYS--QLTSLDVGFNTI----SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC 96 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGT--TCSEEECCSSCC----CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCC--cCcEEECCCCcc----CccCHHHHhcccCcCEEECCCCccCccChhhhccC
Confidence 357899999998877 3332 34566 999999998876 45667888999999999999999998886 58999
Q ss_pred CCCCeeeeeCCCCcccc-hhhhcCcCCCEEEccCCcCccc-chhccccccCcEEEeeccCCCCC
Q 042413 271 YLLKYLKLNIPSLKCLH-SLLCTLLNLETLEMPSSYIDQS-PHDIWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 271 ~~L~~L~l~~~~l~~lP-~~i~~l~~L~~L~l~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~ 332 (350)
++|++|++++|.+..+| ..++++++|++|++++|.+... |..++++++|++|++++|.....
T Consensus 97 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 97 TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred CCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence 99999999999999886 5789999999999999976655 55788999999999999876554
No 97
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.24 E-value=1.1e-11 Score=124.43 Aligned_cols=130 Identities=15% Similarity=0.068 Sum_probs=86.4
Q ss_pred CCeeEEEEecCcc-ch-hh-ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCCC
Q 042413 197 ANVKRCFILKDLI-DF-FS-SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYL 272 (350)
Q Consensus 197 ~~~r~L~l~~~~~-~~-~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~ 272 (350)
..+++|.+..+.. .. +. ...++ +|++|.+.++.. ...++..|.++++|++|+|++|.++.+| ..++++++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l----~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 122 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLP--MLKVLNLQHNEL----SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCT--TCCEEECCSSCC----CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred CcCcEEECCCCccCccCHHHHhccc--CcCEEECCCCcc----CccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence 5677777776655 21 11 22455 777777777765 3444456777778888888877777665 56777778
Q ss_pred CCeeeeeCCCCccc-chhhhcCcCCCEEEccCCcCcccchh-c--cccccCcEEEeeccCCCCC
Q 042413 273 LKYLKLNIPSLKCL-HSLLCTLLNLETLEMPSSYIDQSPHD-I--WMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 273 L~~L~l~~~~l~~l-P~~i~~l~~L~~L~l~~~~l~~lP~~-i--~~L~~L~~L~l~~~~~~~~ 332 (350)
|++|++++|.+..+ |..++++++|++|++++|.+..+|.. + ..+++|++|++++|.....
T Consensus 123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 186 (680)
T 1ziw_A 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF 186 (680)
T ss_dssp CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCB
T ss_pred CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccccc
Confidence 88888887777644 45567777888888877776666542 2 3456777888777755444
No 98
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.24 E-value=9.4e-12 Score=123.30 Aligned_cols=132 Identities=16% Similarity=-0.004 Sum_probs=104.5
Q ss_pred CCCCeeEEEEecCcc-chh--hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCC
Q 042413 195 SLANVKRCFILKDLI-DFF--SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENL 270 (350)
Q Consensus 195 ~~~~~r~L~l~~~~~-~~~--~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l 270 (350)
.+..+++|.+..+.+ ..+ ....++ +|++|.+.++.. ....+..|.++++|++|+|++|.++.+ |..++++
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 104 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLI--NLTFLDLTRCQI----YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP 104 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCT--TCSEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred CCCcCcEEEccCCccCcCChhHhccCc--cceEEECCCCcc----ceeChhhccCccccCeeeCCCCcccccChhhhccc
Confidence 456789999998887 332 233556 999999998876 456677889999999999999998754 6788999
Q ss_pred CCCCeeeeeCCCCccc-chhhhcCcCCCEEEccCCcCcccc-hhccccccCcEEEeeccCCCCC
Q 042413 271 YLLKYLKLNIPSLKCL-HSLLCTLLNLETLEMPSSYIDQSP-HDIWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 271 ~~L~~L~l~~~~l~~l-P~~i~~l~~L~~L~l~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~ 332 (350)
++|++|++++|.++.+ |..++.+++|++|++++|.+..++ +.+..+++|++|++++|.....
T Consensus 105 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168 (606)
T ss_dssp TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEE
T ss_pred ccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccccc
Confidence 9999999999999877 567889999999999999877763 3344588999999988866544
No 99
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.24 E-value=1.2e-11 Score=121.69 Aligned_cols=97 Identities=24% Similarity=0.231 Sum_probs=84.4
Q ss_pred eeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccC
Q 042413 249 YLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCIS 328 (350)
Q Consensus 249 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~ 328 (350)
.|++|+|++|.++.+|. ++.+++|++|+|++|.++.+|..++.+++|++|+|++|.+..+| .++.+++|+.|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 47789999999999997 99999999999999999999999999999999999999999999 89999999999999998
Q ss_pred CCCCCCCccccccccccccc
Q 042413 329 PCTSKNYSSSLKNLIFISAL 348 (350)
Q Consensus 329 ~~~~~~~~~~l~~L~~L~~L 348 (350)
..... .|..+.+|++|+.|
T Consensus 520 l~~~~-~p~~l~~l~~L~~L 538 (567)
T 1dce_A 520 LQQSA-AIQPLVSCPRLVLL 538 (567)
T ss_dssp CCSSS-TTGGGGGCTTCCEE
T ss_pred CCCCC-CcHHHhcCCCCCEE
Confidence 76651 14555555555544
No 100
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.23 E-value=1.8e-11 Score=120.15 Aligned_cols=123 Identities=16% Similarity=0.096 Sum_probs=103.1
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCcccc-hhhhcCcCCCE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCLH-SLLCTLLNLET 298 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP-~~i~~l~~L~~ 298 (350)
+++.|.+.++.. ....+..|.++++|++|+|++|.++.++ ..++++++|++|++++|.++.+| ..++.+++|++
T Consensus 29 ~l~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 29 STKNLDLSFNPL----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (570)
T ss_dssp SCCEEECCSCCC----CEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred cccEEEccCCcc----CccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence 899999999987 4566678999999999999999999775 67899999999999999999776 67899999999
Q ss_pred EEccCCcCcccch-hccccccCcEEEeeccCCCCCCCCccccccccccccc
Q 042413 299 LEMPSSYIDQSPH-DIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISAL 348 (350)
Q Consensus 299 L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L 348 (350)
|++++|.+..+|. .++++++|++|++++|..... ..|..++++++|++|
T Consensus 105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L 154 (570)
T 2z63_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHL 154 (570)
T ss_dssp EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCC-CCCGGGGGCTTCCEE
T ss_pred ccccccccccCCCccccccccccEEecCCCcccee-cChhhhcccCCCCEE
Confidence 9999999999887 799999999999999866542 234455555555544
No 101
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.22 E-value=6e-11 Score=115.36 Aligned_cols=144 Identities=13% Similarity=0.135 Sum_probs=107.5
Q ss_pred CCCeeEEEEecCccc--hhh-ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCc-Cccc-cCCC
Q 042413 196 LANVKRCFILKDLID--FFS-SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQ-YPSG-LENL 270 (350)
Q Consensus 196 ~~~~r~L~l~~~~~~--~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~-i~~l 270 (350)
...+++|.+..+... .+. ...++ +|+.|.+.++.... ....+..+..+++|+.|++++|.++. +|.. +..+
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~N~l~~--l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l 398 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLT--ELETLILQMNQLKE--LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCS--SCCEEECCSSCCCB--HHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC
T ss_pred CCcccEEEeECCccChhhhhhhccCC--CCCEEEccCCccCc--cccchHHHhhCCCCCEEECCCCcCCcccccchhccC
Confidence 456788888887762 233 23555 89999998888731 11344678899999999999999886 8865 7788
Q ss_pred CCCCeeeeeCCCCc-ccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413 271 YLLKYLKLNIPSLK-CLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA 347 (350)
Q Consensus 271 ~~L~~L~l~~~~l~-~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~ 347 (350)
++|++|++++|.++ .+|..+. ++|++|++++|.+..+|..+..+++|++|++++|.....+.. .+.++++|+.
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~--~~~~l~~L~~ 472 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDG--IFDRLTSLQK 472 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTT--TTTTCTTCCE
T ss_pred ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHH--HhccCCcccE
Confidence 99999999999885 5666554 789999999998889999888999999999999877654332 1444444443
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.22 E-value=2e-11 Score=110.86 Aligned_cols=132 Identities=8% Similarity=-0.050 Sum_probs=96.6
Q ss_pred CCCeeEEEEecCccch-------hhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCc---Cc-
Q 042413 196 LANVKRCFILKDLIDF-------FSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQ---YP- 264 (350)
Q Consensus 196 ~~~~r~L~l~~~~~~~-------~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~---lp- 264 (350)
...++.|.+..+.... .....++ +|+.|.+.++.. ...++..+..+++|++|+|++|.+.. ++
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~--~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 189 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAELQQWLKP--GLKVLSIAQAHS----PAFSCEQVRAFPALTSLDLSDNPGLGERGLMA 189 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHHHTTBCS--CCCEEEEECCSS----CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT
T ss_pred CCCCCEEEeecccccchhhhhHHHHhhhcc--CCCEEEeeCCCc----chhhHHHhccCCCCCEEECCCCCCccchhhhH
Confidence 3567778888777621 1112355 888888888876 44566777888889999999888652 33
Q ss_pred -cccCCCCCCCeeeeeCCCCcccchh----hhcCcCCCEEEccCCcCccc-chhcccc---ccCcEEEeeccCCCCCC
Q 042413 265 -SGLENLYLLKYLKLNIPSLKCLHSL----LCTLLNLETLEMPSSYIDQS-PHDIWMM---QKLMHLYFYCISPCTSK 333 (350)
Q Consensus 265 -~~i~~l~~L~~L~l~~~~l~~lP~~----i~~l~~L~~L~l~~~~l~~l-P~~i~~L---~~L~~L~l~~~~~~~~~ 333 (350)
..++.+++|++|++++|.++.+|.. ++.+++|++|++++|.+..+ |..++.+ ++|++|++++|.....+
T Consensus 190 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp 267 (310)
T 4glp_A 190 ALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVP 267 (310)
T ss_dssp TSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCC
T ss_pred HHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchh
Confidence 3346788899999999888776653 46788999999999977776 7777776 58999999888776543
No 103
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.22 E-value=2.6e-11 Score=124.94 Aligned_cols=130 Identities=16% Similarity=0.093 Sum_probs=104.8
Q ss_pred chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCC-CCcC-ccccCCCCCCCeeeeeCCCCccc-
Q 042413 210 DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAV-LDQY-PSGLENLYLLKYLKLNIPSLKCL- 286 (350)
Q Consensus 210 ~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~l-p~~i~~l~~L~~L~l~~~~l~~l- 286 (350)
.+|. ..+ +++.|.+.++.. ....+..|.++++|++|+|++|. +..+ |..++++++|++|+|++|.+..+
T Consensus 18 ~vP~--lp~--~l~~LdLs~N~i----~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 18 QVPQ--VLN--TTERLLLSFNYI----RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH 89 (844)
T ss_dssp CCCS--SCT--TCCEEEEESCCC----CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred CCCC--CCC--CcCEEECCCCcC----CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence 4554 345 999999999987 55667789999999999999996 4466 78899999999999999999866
Q ss_pred chhhhcCcCCCEEEccCCcCcc-cchh--ccccccCcEEEeeccCCCCCCCCccccccccccccc
Q 042413 287 HSLLCTLLNLETLEMPSSYIDQ-SPHD--IWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISAL 348 (350)
Q Consensus 287 P~~i~~l~~L~~L~l~~~~l~~-lP~~--i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L 348 (350)
|..++.+++|++|++++|.+.. +|.. ++++++|++|++++|...... .+..+++|++|++|
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-LHPSFGKLNSLKSI 153 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC-CCGGGGTCSSCCEE
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc-cchhHhhCCCCCEE
Confidence 8889999999999999997765 5665 999999999999999776542 12345555555544
No 104
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.22 E-value=5.8e-11 Score=108.81 Aligned_cols=103 Identities=15% Similarity=0.055 Sum_probs=55.3
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETL 299 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L 299 (350)
+++.|.+.++.. ....+..|.++++|++|++++|.++.+ |..++.+++|++|++++|.++.+|..+. ++|++|
T Consensus 55 ~l~~L~l~~n~i----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L 128 (332)
T 2ft3_A 55 DTTLLDLQNNDI----SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVEL 128 (332)
T ss_dssp TCCEEECCSSCC----CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEE
T ss_pred CCeEEECCCCcC----CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEE
Confidence 555555555544 233334455555555555555555533 4455555555555555555555555444 455555
Q ss_pred EccCCcCcccch-hccccccCcEEEeeccCC
Q 042413 300 EMPSSYIDQSPH-DIWMMQKLMHLYFYCISP 329 (350)
Q Consensus 300 ~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~ 329 (350)
++++|.+..+|. .+..+++|++|++++|..
T Consensus 129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp ECCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred ECCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence 555555555544 245555555555555543
No 105
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.22 E-value=2.2e-11 Score=101.25 Aligned_cols=81 Identities=20% Similarity=0.302 Sum_probs=40.8
Q ss_pred ceeeEEEccCCCCCcC-ccccCCCCCCCeeeeeCCCCcccchhh-hcCcCCCEEEccCCcCcccchh-ccccccCcEEEe
Q 042413 248 KYLRVLNLGSAVLDQY-PSGLENLYLLKYLKLNIPSLKCLHSLL-CTLLNLETLEMPSSYIDQSPHD-IWMMQKLMHLYF 324 (350)
Q Consensus 248 ~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~l~~lP~~i-~~l~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l 324 (350)
+.|++|+|++|.++.+ |..++.+++|++|+|++|+++.+|..+ +.+++|++|++++|.+..+|.. +..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 4455555555555544 334455555555555555555554432 4455555555555555555443 445555555555
Q ss_pred eccC
Q 042413 325 YCIS 328 (350)
Q Consensus 325 ~~~~ 328 (350)
++|.
T Consensus 113 ~~N~ 116 (174)
T 2r9u_A 113 YNNP 116 (174)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 5543
No 106
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.22 E-value=2.7e-11 Score=110.21 Aligned_cols=86 Identities=22% Similarity=0.136 Sum_probs=40.6
Q ss_pred cCCceeeEEEccCCCCCcCc---cc-cCCCCCCCeeeeeCCCCcccc--hhhhcCcCCCEEEccCCcCcccchhcccccc
Q 042413 245 KRFKYLRVLNLGSAVLDQYP---SG-LENLYLLKYLKLNIPSLKCLH--SLLCTLLNLETLEMPSSYIDQSPHDIWMMQK 318 (350)
Q Consensus 245 ~~l~~L~~L~L~~~~l~~lp---~~-i~~l~~L~~L~l~~~~l~~lP--~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~ 318 (350)
..+++|+.|+|++|.++.+| .. +..+++|++|++++|.++..+ ..+..+++|++|++++|.+..+|..+. ++
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~ 275 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AK 275 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SE
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CC
Confidence 44445555555555444221 11 123445555555555554332 223344555555555555555555444 45
Q ss_pred CcEEEeeccCCCCC
Q 042413 319 LMHLYFYCISPCTS 332 (350)
Q Consensus 319 L~~L~l~~~~~~~~ 332 (350)
|++|++++|.....
T Consensus 276 L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 276 LSVLDLSYNRLDRN 289 (312)
T ss_dssp EEEEECCSSCCCSC
T ss_pred ceEEECCCCCCCCC
Confidence 55555555544433
No 107
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.21 E-value=1.7e-11 Score=111.33 Aligned_cols=143 Identities=14% Similarity=0.035 Sum_probs=99.5
Q ss_pred CCCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCcc-ch-HHHhcCCceeeEEEccCCCCCcCccc----
Q 042413 196 LANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSK-DY-ENFFKRFKYLRVLNLGSAVLDQYPSG---- 266 (350)
Q Consensus 196 ~~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~-~~-~~~~~~l~~L~~L~L~~~~l~~lp~~---- 266 (350)
..++++|.+..+.. ..+. ...++ +|++|.+.++.... .. .. ...+..+++|++|+|++|.++.+|..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~--~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l 219 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFP--ALTSLDLSDNPGLG--ERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL 219 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCT--TCCEEECCSCTTCH--HHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCC--CCCEEECCCCCCcc--chhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH
Confidence 45788888888877 2222 22455 88888888887520 00 11 12235788888889988888766542
Q ss_pred cCCCCCCCeeeeeCCCCccc-chhhhcC---cCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCccccccc
Q 042413 267 LENLYLLKYLKLNIPSLKCL-HSLLCTL---LNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNL 342 (350)
Q Consensus 267 i~~l~~L~~L~l~~~~l~~l-P~~i~~l---~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L 342 (350)
++.+++|++|++++|.+..+ |+.++.+ ++|++|++++|.+..+|..+. ++|++|++++|...+.+ .+..+++|
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~-~~~~l~~L 296 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAP-QPDELPEV 296 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCC-CTTSCCCC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCc-hhhhCCCc
Confidence 46778888999988888865 7777776 588899998888888888775 68888998888766542 24445555
Q ss_pred ccc
Q 042413 343 IFI 345 (350)
Q Consensus 343 ~~L 345 (350)
+.|
T Consensus 297 ~~L 299 (310)
T 4glp_A 297 DNL 299 (310)
T ss_dssp SCE
T ss_pred cEE
Confidence 444
No 108
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.19 E-value=3.6e-11 Score=109.33 Aligned_cols=106 Identities=15% Similarity=0.072 Sum_probs=53.5
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCc---Ccccc--CCCCCCCeeeeeCCCCcccc---hhh-h
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQ---YPSGL--ENLYLLKYLKLNIPSLKCLH---SLL-C 291 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~---lp~~i--~~l~~L~~L~l~~~~l~~lP---~~i-~ 291 (350)
+|+.|.+.++.. ....+..+..+++|+.|+|++|.+.. +|..+ +.+++|++|++++|.++.+| ..+ .
T Consensus 150 ~L~~L~L~~N~l----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 225 (312)
T 1wwl_A 150 GLKVLSIAQAHS----LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225 (312)
T ss_dssp TCCEEEEESCSC----CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH
T ss_pred CCcEEEeeCCCC----ccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh
Confidence 555555555554 23333455555555555555555431 23333 55555555555555555332 222 3
Q ss_pred cCcCCCEEEccCCcCcccc--hhccccccCcEEEeeccCCC
Q 042413 292 TLLNLETLEMPSSYIDQSP--HDIWMMQKLMHLYFYCISPC 330 (350)
Q Consensus 292 ~l~~L~~L~l~~~~l~~lP--~~i~~L~~L~~L~l~~~~~~ 330 (350)
.+++|++|++++|.+...+ ..+..+++|++|++++|...
T Consensus 226 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 4455666666655554433 23444555666666555444
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.19 E-value=4.4e-11 Score=106.18 Aligned_cols=105 Identities=19% Similarity=0.174 Sum_probs=91.3
Q ss_pred CCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcC
Q 042413 216 KHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLN 295 (350)
Q Consensus 216 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~ 295 (350)
.++ +|+.|.+.++... .. + .+..+++|+.|+|++|.++.+|. ++.+++|++|++++|.++.+|.... .+
T Consensus 39 ~l~--~L~~L~l~~n~i~----~l-~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~ 107 (263)
T 1xeu_A 39 ELS--GVQNFNGDNSNIQ----SL-A-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--AC 107 (263)
T ss_dssp HHT--TCSEEECTTSCCC----CC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SS
T ss_pred hcC--cCcEEECcCCCcc----cc-h-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--Cc
Confidence 455 9999999998763 22 2 57889999999999999999887 9999999999999999999887444 99
Q ss_pred CCEEEccCCcCcccchhccccccCcEEEeeccCCCCC
Q 042413 296 LETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 296 L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~ 332 (350)
|++|++++|.+..+| .++.+++|++|++++|.....
T Consensus 108 L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~ 143 (263)
T 1xeu_A 108 LSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI 143 (263)
T ss_dssp CCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC
T ss_pred ccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC
Confidence 999999999999886 599999999999999876654
No 110
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.18 E-value=3.7e-11 Score=99.42 Aligned_cols=81 Identities=20% Similarity=0.268 Sum_probs=47.7
Q ss_pred ceeeEEEccCCCCCcC-ccccCCCCCCCeeeeeCCCCcccchhh-hcCcCCCEEEccCCcCcccchh-ccccccCcEEEe
Q 042413 248 KYLRVLNLGSAVLDQY-PSGLENLYLLKYLKLNIPSLKCLHSLL-CTLLNLETLEMPSSYIDQSPHD-IWMMQKLMHLYF 324 (350)
Q Consensus 248 ~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~l~~lP~~i-~~l~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l 324 (350)
+.|++|+|++|.++.+ |..++.+++|++|+|++|.++.+|+.. ..+++|++|++++|.+..+|.. +..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 4556666666666654 344556666666666666666555543 5566666666666666555553 555666666666
Q ss_pred eccC
Q 042413 325 YCIS 328 (350)
Q Consensus 325 ~~~~ 328 (350)
++|.
T Consensus 110 ~~N~ 113 (170)
T 3g39_A 110 LNNP 113 (170)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6554
No 111
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.18 E-value=3.8e-11 Score=118.89 Aligned_cols=108 Identities=15% Similarity=0.044 Sum_probs=96.8
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCCCCCCeeeeeCCCCccc-chhhhcCcCCCE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENLYLLKYLKLNIPSLKCL-HSLLCTLLNLET 298 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~l~~l-P~~i~~l~~L~~ 298 (350)
.++.|.+.++.. ....+..|.++++|++|+|++|.++.+ |..++++++|++|++++|.+..+ |..++.+++|++
T Consensus 34 ~l~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (606)
T 3t6q_A 34 STECLEFSFNVL----PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH 109 (606)
T ss_dssp TCCEEECTTCCC----SEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred cCcEEEccCCcc----CcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccE
Confidence 899999999987 556678899999999999999998854 78899999999999999999866 778999999999
Q ss_pred EEccCCcCccc-chhccccccCcEEEeeccCCCCC
Q 042413 299 LEMPSSYIDQS-PHDIWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 299 L~l~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~ 332 (350)
|++++|.+..+ |..++++++|++|++++|.....
T Consensus 110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~ 144 (606)
T 3t6q_A 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144 (606)
T ss_dssp EECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCC
T ss_pred eeccccCcccCCcchhccCCcccEEECCCCccccc
Confidence 99999988887 56899999999999999877653
No 112
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.18 E-value=1.2e-10 Score=111.75 Aligned_cols=81 Identities=26% Similarity=0.355 Sum_probs=35.3
Q ss_pred hcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEE
Q 042413 244 FKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLY 323 (350)
Q Consensus 244 ~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~ 323 (350)
+..+++|+.|++++|.++.+|. +..+++|++|++++|.+..+|+ ++.+++|+.|++++|.+..++. ++.+++|+.|+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~ 337 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLF 337 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEE
T ss_pred hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeE
Confidence 4444444444444444444433 4444444444444444444433 3444444444444443333332 33344444444
Q ss_pred eecc
Q 042413 324 FYCI 327 (350)
Q Consensus 324 l~~~ 327 (350)
+++|
T Consensus 338 l~~n 341 (466)
T 1o6v_A 338 FYNN 341 (466)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 4433
No 113
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.17 E-value=1.4e-10 Score=113.91 Aligned_cols=144 Identities=13% Similarity=0.084 Sum_probs=104.6
Q ss_pred CCCeeEEEEecCccc--hhh-ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCc-Cccc-cCCC
Q 042413 196 LANVKRCFILKDLID--FFS-SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQ-YPSG-LENL 270 (350)
Q Consensus 196 ~~~~r~L~l~~~~~~--~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~-i~~l 270 (350)
...+++|.+..+... .+. ...++ +|+.|.+.++.... ....+..+..+++|+.|++++|.++. +|.. +..+
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~N~l~~--~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l 427 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLK--RLQTLILQRNGLKN--FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCS--SCCEEECCSSCCCB--TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC
T ss_pred CCCceEEECCCCccccchhhhhcccC--CCCEEECCCCCcCC--cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc
Confidence 456788888887762 232 33555 89999988887631 11334567889999999999999885 7754 6778
Q ss_pred CCCCeeeeeCCCCc-ccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413 271 YLLKYLKLNIPSLK-CLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA 347 (350)
Q Consensus 271 ~~L~~L~l~~~~l~-~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~ 347 (350)
++|++|++++|.++ .+|..+. ++|++|++++|.+..+|.+++.+++|+.|++++|.....+.. .+..+++|+.
T Consensus 428 ~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~--~~~~l~~L~~ 501 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDG--VFDRLTSLQY 501 (562)
T ss_dssp TTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTT--STTTCTTCCC
T ss_pred ccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHH--HHhcCCCCCE
Confidence 88999999988885 4555443 689999999998899999888999999999999877654332 1444444443
No 114
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.16 E-value=9.4e-11 Score=97.39 Aligned_cols=87 Identities=18% Similarity=0.152 Sum_probs=76.7
Q ss_pred CceeeEEEccCCCCCcCcc-ccCCCCCCCeeeeeCCCCcccchh-hhcCcCCCEEEccCCcCcccchh-ccccccCcEEE
Q 042413 247 FKYLRVLNLGSAVLDQYPS-GLENLYLLKYLKLNIPSLKCLHSL-LCTLLNLETLEMPSSYIDQSPHD-IWMMQKLMHLY 323 (350)
Q Consensus 247 l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~ 323 (350)
.++|+.|++++|.++.+|. .++.+++|++|++++|.++.+|.. ++.+++|++|++++|.+..+|.. +..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 3689999999999998875 468999999999999999998876 58999999999999999998875 68899999999
Q ss_pred eeccCCCCCC
Q 042413 324 FYCISPCTSK 333 (350)
Q Consensus 324 l~~~~~~~~~ 333 (350)
+++|.....+
T Consensus 107 l~~N~l~~~~ 116 (177)
T 2o6r_A 107 LDTNQLKSVP 116 (177)
T ss_dssp CCSSCCSCCC
T ss_pred CcCCcceEeC
Confidence 9999776553
No 115
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.16 E-value=1.3e-10 Score=111.40 Aligned_cols=120 Identities=16% Similarity=0.105 Sum_probs=59.7
Q ss_pred CCeeEEEEecCccchhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCee
Q 042413 197 ANVKRCFILKDLIDFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYL 276 (350)
Q Consensus 197 ~~~r~L~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L 276 (350)
..+++|.+..+.........++ +|+.|.+.++... .. .+..+++|++|++++|.++.+| ++.+++|++|
T Consensus 64 ~~L~~L~Ls~n~l~~~~~~~l~--~L~~L~Ls~N~l~----~~---~~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L 132 (457)
T 3bz5_A 64 TGLTKLICTSNNITTLDLSQNT--NLTYLACDSNKLT----NL---DVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYL 132 (457)
T ss_dssp TTCSEEECCSSCCSCCCCTTCT--TCSEEECCSSCCS----CC---CCTTCTTCCEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred CCCCEEEccCCcCCeEccccCC--CCCEEECcCCCCc----ee---ecCCCCcCCEEECCCCcCCeec--CCCCCcCCEE
Confidence 3444555544444111122333 5555555554442 11 1445555555555555555443 4555555555
Q ss_pred eeeCCCCcccchhhhcCcCCCEEEccCC-cCcccchhccccccCcEEEeeccCCCC
Q 042413 277 KLNIPSLKCLHSLLCTLLNLETLEMPSS-YIDQSPHDIWMMQKLMHLYFYCISPCT 331 (350)
Q Consensus 277 ~l~~~~l~~lP~~i~~l~~L~~L~l~~~-~l~~lP~~i~~L~~L~~L~l~~~~~~~ 331 (350)
++++|.++.+| ++.+++|++|++++| .++.+ .++.+++|++|++++|....
T Consensus 133 ~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 133 NCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp ECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred ECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence 55555555543 455555555555555 44444 25556666666666665444
No 116
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.16 E-value=1.9e-10 Score=105.86 Aligned_cols=138 Identities=15% Similarity=0.149 Sum_probs=98.3
Q ss_pred CCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCe
Q 042413 197 ANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKY 275 (350)
Q Consensus 197 ~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~ 275 (350)
..++.+.+..+.. ..+....++ +|+.|.+.++... ...+ +..+++|+.|++++|.++.++ .+..+++|++
T Consensus 199 ~~L~~L~l~~n~l~~~~~~~~~~--~L~~L~l~~n~l~----~~~~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~ 269 (347)
T 4fmz_A 199 TSLHYFTAYVNQITDITPVANMT--RLNSLKIGNNKIT----DLSP--LANLSQLTWLEIGTNQISDIN-AVKDLTKLKM 269 (347)
T ss_dssp TTCCEEECCSSCCCCCGGGGGCT--TCCEEECCSSCCC----CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCE
T ss_pred CccceeecccCCCCCCchhhcCC--cCCEEEccCCccC----CCcc--hhcCCCCCEEECCCCccCCCh-hHhcCCCcCE
Confidence 4556666665555 222234555 8888888877762 2222 778888899999988888764 5788889999
Q ss_pred eeeeCCCCcccchhhhcCcCCCEEEccCCcCccc-chhccccccCcEEEeeccCCCCCCCCcccccccccc
Q 042413 276 LKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQS-PHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFI 345 (350)
Q Consensus 276 L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 345 (350)
|++++|.++.+| .+..+++|+.|++++|.+... |..++.+++|++|++++|.....+. ...+++|+.|
T Consensus 270 L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 338 (347)
T 4fmz_A 270 LNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSA 338 (347)
T ss_dssp EECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEE
T ss_pred EEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhcccee
Confidence 999999888875 478889999999999976654 4578889999999999887665433 2334444433
No 117
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.16 E-value=8.8e-11 Score=97.14 Aligned_cols=95 Identities=17% Similarity=0.157 Sum_probs=78.4
Q ss_pred eeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCccc-chhhhcCcCCCEEEccCCcCcccchh-ccccccCcEEEeec
Q 042413 249 YLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCL-HSLLCTLLNLETLEMPSSYIDQSPHD-IWMMQKLMHLYFYC 326 (350)
Q Consensus 249 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~l-P~~i~~l~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~ 326 (350)
..+.+++++|.++.+|..+. .+|++|+|++|.++.+ |..++.+++|++|++++|.+..+|.. +..+++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 35789999999999998774 8899999999999988 56689999999999999999999885 58999999999999
Q ss_pred cCCCCCCC-Ccccccccccc
Q 042413 327 ISPCTSKN-YSSSLKNLIFI 345 (350)
Q Consensus 327 ~~~~~~~~-~~~~l~~L~~L 345 (350)
|.+...+. .+..+.+|+.|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEE
T ss_pred CccCEeCHHHhcCCCCCCEE
Confidence 98776532 23344444433
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.15 E-value=2.6e-11 Score=119.10 Aligned_cols=116 Identities=13% Similarity=0.068 Sum_probs=73.2
Q ss_pred CeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCee
Q 042413 198 NVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYL 276 (350)
Q Consensus 198 ~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L 276 (350)
++++|.+..+.+ .++. .++ +|+.|.+.+|... .++ . .+++|+.|+|++|.++.+|. ++ ++|++|
T Consensus 121 ~L~~L~Ls~N~l~~lp~--~l~--~L~~L~Ls~N~l~----~lp-~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L 185 (571)
T 3cvr_A 121 SLKHLDVDNNQLTMLPE--LPA--LLEYINADNNQLT----MLP-E---LPTSLEVLSVRNNQLTFLPE-LP--ESLEAL 185 (571)
T ss_dssp TCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCCS----CCC-C---CCTTCCEEECCSSCCSCCCC-CC--TTCCEE
T ss_pred CCCEEECCCCcCCCCCC--cCc--cccEEeCCCCccC----cCC-C---cCCCcCEEECCCCCCCCcch-hh--CCCCEE
Confidence 455555555544 2222 333 6666666666552 122 1 45667777777777777766 55 677777
Q ss_pred eeeCCCCcccchhhhcCcCC-------CEEEccCCcCcccchhccccccCcEEEeeccCCCC
Q 042413 277 KLNIPSLKCLHSLLCTLLNL-------ETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCT 331 (350)
Q Consensus 277 ~l~~~~l~~lP~~i~~l~~L-------~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~ 331 (350)
+|++|.|+.+|. +.. +| ++|++++|.+..+|..++++++|+.|++++|...+
T Consensus 186 ~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 186 DVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp ECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred ECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 777777777776 544 56 77777777777777777777777777777776544
No 119
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.14 E-value=1.1e-10 Score=96.92 Aligned_cols=93 Identities=19% Similarity=0.194 Sum_probs=77.7
Q ss_pred eEEEccCCCCCcCccccCCCCCCCeeeeeCCCCccc-chhhhcCcCCCEEEccCCcCcccchh-ccccccCcEEEeeccC
Q 042413 251 RVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCL-HSLLCTLLNLETLEMPSSYIDQSPHD-IWMMQKLMHLYFYCIS 328 (350)
Q Consensus 251 ~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~l-P~~i~~l~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~~~ 328 (350)
+.+++++|.++.+|..+. .+|++|+|++|.++.+ |..++.+++|++|+|++|.+..+|.. +..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 689999999999998876 8999999999999988 56789999999999999999999986 5899999999999998
Q ss_pred CCCCCCCcccccccccccc
Q 042413 329 PCTSKNYSSSLKNLIFISA 347 (350)
Q Consensus 329 ~~~~~~~~~~l~~L~~L~~ 347 (350)
+...+. ..+.++++|+.
T Consensus 93 l~~l~~--~~~~~l~~L~~ 109 (174)
T 2r9u_A 93 LKSIPR--GAFDNLKSLTH 109 (174)
T ss_dssp CCCCCT--TTTTTCTTCSE
T ss_pred cceeCH--HHhccccCCCE
Confidence 776533 22444444443
No 120
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.14 E-value=1.6e-12 Score=110.29 Aligned_cols=125 Identities=14% Similarity=0.108 Sum_probs=94.8
Q ss_pred CeeEEEEecCcc---chh-hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCC
Q 042413 198 NVKRCFILKDLI---DFF-SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLL 273 (350)
Q Consensus 198 ~~r~L~l~~~~~---~~~-~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L 273 (350)
.++...+.+... .++ ....++ +|+.|.+.++... . ++ .+..+++|+.|++++|.++.+|..+..+++|
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~--~L~~L~ls~n~l~----~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L 95 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLK--ACKHLALSTNNIE----K-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTL 95 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTT--TCSEEECSEEEES----C-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHC
T ss_pred chheeEeccccCcHhhhhHHHhcCC--CCCEEECCCCCCc----c-cc-ccccCCCCCEEECCCCCcccccchhhcCCcC
Confidence 455555554321 222 233456 8999998887763 2 23 6777888999999999988888877778899
Q ss_pred CeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccch--hccccccCcEEEeeccCCCC
Q 042413 274 KYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPH--DIWMMQKLMHLYFYCISPCT 331 (350)
Q Consensus 274 ~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~--~i~~L~~L~~L~l~~~~~~~ 331 (350)
++|++++|.++.+| .++.+++|++|++++|.+..+|. .+..+++|++|++++|....
T Consensus 96 ~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 96 EELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp SEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 99999999988887 58888999999999998888765 78889999999998875433
No 121
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.13 E-value=2.8e-10 Score=109.29 Aligned_cols=125 Identities=14% Similarity=0.124 Sum_probs=87.9
Q ss_pred CCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCe
Q 042413 197 ANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKY 275 (350)
Q Consensus 197 ~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~ 275 (350)
..++.|.+..+.. ..+....++ +|+.|.+.++... ...+ +..+++|+.|++++|.++.++. ++.+++|++
T Consensus 243 ~~L~~L~l~~n~l~~~~~~~~l~--~L~~L~l~~n~l~----~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 313 (466)
T 1o6v_A 243 TNLTDLDLANNQISNLAPLSGLT--KLTELKLGANQIS----NISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTY 313 (466)
T ss_dssp TTCSEEECCSSCCCCCGGGTTCT--TCSEEECCSSCCC----CCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSE
T ss_pred CCCCEEECCCCccccchhhhcCC--CCCEEECCCCccC----cccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCE
Confidence 4555666655554 222233444 7777777776652 2222 7778888888888888887665 777888888
Q ss_pred eeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCC
Q 042413 276 LKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 276 L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~ 332 (350)
|++++|.+..+++ ++.+++|+.|++++|.+..+| .+..+++|+.|++++|.....
T Consensus 314 L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~ 368 (466)
T 1o6v_A 314 LTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDL 368 (466)
T ss_dssp EECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBC
T ss_pred EECcCCcCCCchh-hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCcc
Confidence 8888888877665 678888888888888777764 577888888888887766554
No 122
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.12 E-value=4.6e-13 Score=113.77 Aligned_cols=85 Identities=20% Similarity=0.178 Sum_probs=43.1
Q ss_pred HhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEE
Q 042413 243 FFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHL 322 (350)
Q Consensus 243 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L 322 (350)
.+..+++|++|++++|.++.+| .++.+++|++|++++|.++.+|..++.+++|++|++++|.+..+| .++.+++|++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 4445555555555555555444 444455555555555555555544444455555555555444444 34455555555
Q ss_pred EeeccCC
Q 042413 323 YFYCISP 329 (350)
Q Consensus 323 ~l~~~~~ 329 (350)
++++|..
T Consensus 121 ~l~~N~i 127 (198)
T 1ds9_A 121 YMSNNKI 127 (198)
T ss_dssp EESEEEC
T ss_pred ECCCCcC
Confidence 5554433
No 123
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.12 E-value=2.1e-10 Score=113.78 Aligned_cols=123 Identities=15% Similarity=-0.010 Sum_probs=89.0
Q ss_pred CCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCC
Q 042413 196 LANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLK 274 (350)
Q Consensus 196 ~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~ 274 (350)
+..++.|.+..+.+ .++. .++ +|++|.+.++... .++. .+++|++|+|++|.++.+|. .+.+|+
T Consensus 60 ~~~L~~L~L~~N~l~~lp~--~l~--~L~~L~Ls~N~l~----~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~ 124 (622)
T 3g06_A 60 PAHITTLVIPDNNLTSLPA--LPP--ELRTLEVSGNQLT----SLPV----LPPGLLELSIFSNPLTHLPA---LPSGLC 124 (622)
T ss_dssp CTTCSEEEECSCCCSCCCC--CCT--TCCEEEECSCCCS----CCCC----CCTTCCEEEECSCCCCCCCC---CCTTCC
T ss_pred CCCCcEEEecCCCCCCCCC--cCC--CCCEEEcCCCcCC----cCCC----CCCCCCEEECcCCcCCCCCC---CCCCcC
Confidence 46788999988877 4443 445 8999999888763 2222 67889999999999888887 567888
Q ss_pred eeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhcccc-----------------ccCcEEEeeccCCCCCCCCc
Q 042413 275 YLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMM-----------------QKLMHLYFYCISPCTSKNYS 336 (350)
Q Consensus 275 ~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L-----------------~~L~~L~l~~~~~~~~~~~~ 336 (350)
+|++++|.++.+|.. +++|++|++++|.+..+|..+.+| ++|+.|++++|.....+..+
T Consensus 125 ~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~ 200 (622)
T 3g06_A 125 KLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLP 200 (622)
T ss_dssp EEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCC
T ss_pred EEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCcc
Confidence 888988888888874 478888888888777766533322 56677777776655543333
No 124
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.09 E-value=2.5e-10 Score=109.38 Aligned_cols=121 Identities=18% Similarity=0.103 Sum_probs=102.8
Q ss_pred CCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCC
Q 042413 196 LANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLK 274 (350)
Q Consensus 196 ~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~ 274 (350)
...+++|.+..+.. ..+....++ +|+.|.+.++... .. + +..+++|++|++++|.++.+| ++.+++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~--~L~~L~Ls~n~l~----~~-~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLT--GLTKLICTSNNIT----TL-D--LSQNTNLTYLACDSNKLTNLD--VTPLTKLT 109 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCT--TCSEEECCSSCCS----CC-C--CTTCTTCSEEECCSSCCSCCC--CTTCTTCC
T ss_pred cCCCCEEEccCCCcccChhhcccC--CCCEEEccCCcCC----eE-c--cccCCCCCEEECcCCCCceee--cCCCCcCC
Confidence 36789999988877 455555667 9999999999874 22 2 788999999999999999886 88999999
Q ss_pred eeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCC
Q 042413 275 YLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCT 331 (350)
Q Consensus 275 ~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~ 331 (350)
+|++++|.++.+| ++.+++|++|++++|.+..+| ++.+++|+.|++++|...+
T Consensus 110 ~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~ 162 (457)
T 3bz5_A 110 YLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKIT 162 (457)
T ss_dssp EEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCC
T ss_pred EEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccc
Confidence 9999999999886 889999999999999888885 8899999999999885443
No 125
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.08 E-value=6.1e-11 Score=108.59 Aligned_cols=127 Identities=15% Similarity=0.130 Sum_probs=78.5
Q ss_pred CCeeEEEEecCcc--chhh-ccCCCCCCeeEEEEecC-CCCCCCccchHHHhcCCceeeEEEccCC-CCCc--CccccCC
Q 042413 197 ANVKRCFILKDLI--DFFS-SLKHSDMYLQSFLNHSS-KNNHLNSKDYENFFKRFKYLRVLNLGSA-VLDQ--YPSGLEN 269 (350)
Q Consensus 197 ~~~r~L~l~~~~~--~~~~-~~~~~~~~Lr~L~~~~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~--lp~~i~~ 269 (350)
.++++|.+..+.. ..+. ...++ +|+.|.+.++ ... ....+..+..+++|+.|++++| .++. ++..+..
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~~~--~L~~L~L~~~~~l~---~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 192 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAKNS--NLVRLNLSGCSGFS---EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH 192 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTTCT--TCSEEECTTCBSCC---HHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred CCCCEEeCcCcccCHHHHHHHhcCC--CCCEEECCCCCCCC---HHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh
Confidence 3456666655544 1121 22344 6777776666 231 1124455666777777777777 6662 5666666
Q ss_pred CC-CCCeeeeeCCC--C--cccchhhhcCcCCCEEEccCCc-Cc-ccchhccccccCcEEEeeccC
Q 042413 270 LY-LLKYLKLNIPS--L--KCLHSLLCTLLNLETLEMPSSY-ID-QSPHDIWMMQKLMHLYFYCIS 328 (350)
Q Consensus 270 l~-~L~~L~l~~~~--l--~~lP~~i~~l~~L~~L~l~~~~-l~-~lP~~i~~L~~L~~L~l~~~~ 328 (350)
++ +|++|++++|. + ..+|..+..+++|++|++++|. +. ..|..++++++|++|++++|.
T Consensus 193 l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 77 77777777773 3 3566666777777777777774 43 456667777777777777764
No 126
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.08 E-value=3.7e-11 Score=110.06 Aligned_cols=127 Identities=15% Similarity=0.103 Sum_probs=105.3
Q ss_pred CCCeeEEEEecCccc---hhh-ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCC-CCC--cCccccC
Q 042413 196 LANVKRCFILKDLID---FFS-SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSA-VLD--QYPSGLE 268 (350)
Q Consensus 196 ~~~~r~L~l~~~~~~---~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~--~lp~~i~ 268 (350)
..++++|.+..+... .+. ...++ +|++|.+.++.. ....+..+..+++|++|++++| .++ .+|..+.
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~--~L~~L~L~~~~l----~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~ 165 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCS--KLQNLSLEGLRL----SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 165 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBC--CCSEEECTTCBC----CHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCC--CCCEEeCcCccc----CHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh
Confidence 467899999888762 333 33566 999999998875 4455677888999999999999 577 4777788
Q ss_pred CCCCCCeeeeeCC-CCcc--cchhhhcCc-CCCEEEccCCc--C--cccchhccccccCcEEEeeccC
Q 042413 269 NLYLLKYLKLNIP-SLKC--LHSLLCTLL-NLETLEMPSSY--I--DQSPHDIWMMQKLMHLYFYCIS 328 (350)
Q Consensus 269 ~l~~L~~L~l~~~-~l~~--lP~~i~~l~-~L~~L~l~~~~--l--~~lP~~i~~L~~L~~L~l~~~~ 328 (350)
.+++|++|++++| .++. +|..++.++ +|++|++++|. + ..+|..+.++++|++|++++|.
T Consensus 166 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 166 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 8999999999999 8874 788889999 99999999994 4 5678888899999999999986
No 127
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.05 E-value=4.5e-10 Score=110.25 Aligned_cols=127 Identities=13% Similarity=0.058 Sum_probs=76.3
Q ss_pred CCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCe
Q 042413 197 ANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKY 275 (350)
Q Consensus 197 ~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~ 275 (350)
.+++.|.+..+.+ .++. -.. +|+.|.+.+|... .++ . .+++|+.|+|++|.++.+|. .+++|++
T Consensus 100 ~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l~----~lp-~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~ 164 (571)
T 3cvr_A 100 ASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQLT----MLP-E---LPALLEYINADNNQLTMLPE---LPTSLEV 164 (571)
T ss_dssp TTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCCS----CCC-C---CCTTCCEEECCSSCCSCCCC---CCTTCCE
T ss_pred CCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcCC----CCC-C---cCccccEEeCCCCccCcCCC---cCCCcCE
Confidence 4555555555544 2222 112 5666666665542 222 2 46667777777777776665 4567777
Q ss_pred eeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccC-------cEEEeeccCCCCCCCCcccccccccccc
Q 042413 276 LKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKL-------MHLYFYCISPCTSKNYSSSLKNLIFISA 347 (350)
Q Consensus 276 L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L-------~~L~l~~~~~~~~~~~~~~l~~L~~L~~ 347 (350)
|++++|.++.+|. ++ .+|++|++++|.+..+|. +.. +| +.|++++|.+... |..+.++++|+.
T Consensus 165 L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~l---p~~l~~l~~L~~ 234 (571)
T 3cvr_A 165 LSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHI---PENILSLDPTCT 234 (571)
T ss_dssp EECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCC---CGGGGGSCTTEE
T ss_pred EECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceec---CHHHhcCCCCCE
Confidence 7777777777777 55 778888888887777777 554 66 8888887766543 333444444443
No 128
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.04 E-value=7.6e-10 Score=109.83 Aligned_cols=116 Identities=16% Similarity=0.033 Sum_probs=82.8
Q ss_pred CCCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCC
Q 042413 195 SLANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLL 273 (350)
Q Consensus 195 ~~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L 273 (350)
...+++.|.+..+.+ .++. .++ +|+.|.+.++... .++. .+++|+.|++++|.++.+|.. +++|
T Consensus 79 ~l~~L~~L~Ls~N~l~~lp~--~l~--~L~~L~Ls~N~l~----~l~~----~l~~L~~L~L~~N~l~~lp~~---l~~L 143 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSLPV--LPP--GLLELSIFSNPLT----HLPA----LPSGLCKLWIFGNQLTSLPVL---PPGL 143 (622)
T ss_dssp CCTTCCEEEECSCCCSCCCC--CCT--TCCEEEECSCCCC----CCCC----CCTTCCEEECCSSCCSCCCCC---CTTC
T ss_pred cCCCCCEEEcCCCcCCcCCC--CCC--CCCEEECcCCcCC----CCCC----CCCCcCEEECCCCCCCcCCCC---CCCC
Confidence 347899999998887 4443 455 9999999998873 2222 567888899999988888864 3778
Q ss_pred CeeeeeCCCCcccchhhh---cC--------------cCCCEEEccCCcCcccchhccccccCcEEEeeccC
Q 042413 274 KYLKLNIPSLKCLHSLLC---TL--------------LNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCIS 328 (350)
Q Consensus 274 ~~L~l~~~~l~~lP~~i~---~l--------------~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~ 328 (350)
++|++++|.++.+|..+. .| ++|+.|++++|.+..+|..+ ++|+.|++++|.
T Consensus 144 ~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~---~~L~~L~L~~N~ 212 (622)
T 3g06_A 144 QELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLP---SELYKLWAYNNR 212 (622)
T ss_dssp CEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSC
T ss_pred CEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCcc---chhhEEECcCCc
Confidence 888888888776654333 33 78899999999888887643 344444444443
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.03 E-value=6.6e-10 Score=106.41 Aligned_cols=97 Identities=13% Similarity=0.079 Sum_probs=51.4
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLE 300 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~ 300 (350)
+|++|.+.++... .. + .+.++++|++|++++|.++.+|..+ .+|++|++++|.++.+| .++.+++|++|+
T Consensus 132 ~L~~L~L~~n~l~----~l-p-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 132 LLEYLGVSNNQLE----KL-P-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIY 201 (454)
T ss_dssp TCCEEECCSSCCS----SC-C-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEE
T ss_pred CCCEEECcCCCCC----CC-c-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEE
Confidence 5555555555441 11 1 2555555555555555555555432 25555555555555555 355566666666
Q ss_pred ccCCcCcccchhccccccCcEEEeeccCCC
Q 042413 301 MPSSYIDQSPHDIWMMQKLMHLYFYCISPC 330 (350)
Q Consensus 301 l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~ 330 (350)
+++|.+..+|... ++|++|++++|...
T Consensus 202 l~~N~l~~l~~~~---~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 202 ADNNSLKKLPDLP---LSLESIVAGNNILE 228 (454)
T ss_dssp CCSSCCSSCCCCC---TTCCEEECCSSCCS
T ss_pred CCCCcCCcCCCCc---CcccEEECcCCcCC
Confidence 6666555555432 35666666665444
No 130
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.00 E-value=1.3e-09 Score=100.60 Aligned_cols=95 Identities=14% Similarity=0.131 Sum_probs=67.3
Q ss_pred cchHHHhcCCceeeEEEccCCCCCcCccc--------------------------cCCC-CCCCeeeeeCCCCcccchhh
Q 042413 238 KDYENFFKRFKYLRVLNLGSAVLDQYPSG--------------------------LENL-YLLKYLKLNIPSLKCLHSLL 290 (350)
Q Consensus 238 ~~~~~~~~~l~~L~~L~L~~~~l~~lp~~--------------------------i~~l-~~L~~L~l~~~~l~~lP~~i 290 (350)
.+.+..|..+++|++|++++|.++.+|.. +..+ ..+++|++++|+|+.+|..+
T Consensus 94 ~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~ 173 (350)
T 4ay9_X 94 YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA 173 (350)
T ss_dssp EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS
T ss_pred ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh
Confidence 34456677788888888887766544321 1122 24667778888888888777
Q ss_pred hcCcCCCEEEccCC-cCcccch-hccccccCcEEEeeccCCCCC
Q 042413 291 CTLLNLETLEMPSS-YIDQSPH-DIWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 291 ~~l~~L~~L~l~~~-~l~~lP~-~i~~L~~L~~L~l~~~~~~~~ 332 (350)
....+|+.|+++++ .++.+|. .+..+++|+.|++++|.....
T Consensus 174 f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 174 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217 (350)
T ss_dssp STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC
T ss_pred ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc
Confidence 77778888888764 8888886 467888999999988876654
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.98 E-value=1.6e-09 Score=103.67 Aligned_cols=120 Identities=19% Similarity=0.183 Sum_probs=78.3
Q ss_pred CCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCe
Q 042413 197 ANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKY 275 (350)
Q Consensus 197 ~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~ 275 (350)
..++.|.+..+.. .++....++ +|+.|.+.++... .. +. ...+|++|++++|.++.+| .++.+++|++
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~--~L~~L~l~~N~l~----~l-p~---~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~ 199 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSS--FLKIIDVDNNSLK----KL-PD---LPPSLEFIAAGNNQLEELP-ELQNLPFLTA 199 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCT--TCCEEECCSSCCS----CC-CC---CCTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred CCCCEEECcCCCCCCCcccCCCC--CCCEEECCCCcCc----cc-CC---CcccccEEECcCCcCCcCc-cccCCCCCCE
Confidence 5677777777766 444444555 8888888887663 11 11 2346777777777777776 5777777777
Q ss_pred eeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCC
Q 042413 276 LKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCT 331 (350)
Q Consensus 276 L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~ 331 (350)
|++++|.++.+|... .+|++|++++|.+..+|. ++.+++|++|++++|....
T Consensus 200 L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 200 IYADNNSLKKLPDLP---LSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp EECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS
T ss_pred EECCCCcCCcCCCCc---CcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc
Confidence 777777776666532 466777777776666663 6666677777776665544
No 132
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.96 E-value=1.2e-10 Score=109.09 Aligned_cols=86 Identities=21% Similarity=0.157 Sum_probs=38.6
Q ss_pred HhcCCceeeEEEccCCCC-----CcCccccCCCCCCCeeeeeCCCCcc-----cchhh--hcCcCCCEEEccCCcCcc--
Q 042413 243 FFKRFKYLRVLNLGSAVL-----DQYPSGLENLYLLKYLKLNIPSLKC-----LHSLL--CTLLNLETLEMPSSYIDQ-- 308 (350)
Q Consensus 243 ~~~~l~~L~~L~L~~~~l-----~~lp~~i~~l~~L~~L~l~~~~l~~-----lP~~i--~~l~~L~~L~l~~~~l~~-- 308 (350)
.+..+++|++|+|++|.+ ..+|..+..+++|++|+|++|.++. +|..+ +++++|++|++++|.+..
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g 290 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH
Confidence 334444444444444444 2344444444445555554444432 23333 224445555555444443
Q ss_pred ---cchhc-cccccCcEEEeeccC
Q 042413 309 ---SPHDI-WMMQKLMHLYFYCIS 328 (350)
Q Consensus 309 ---lP~~i-~~L~~L~~L~l~~~~ 328 (350)
+|..+ .++++|++|++++|.
T Consensus 291 ~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 291 VRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHHHhcCCCceEEEccCCc
Confidence 44444 334445555554443
No 133
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.94 E-value=1.4e-09 Score=100.04 Aligned_cols=86 Identities=14% Similarity=0.091 Sum_probs=66.5
Q ss_pred hcCCceeeEEEccC-CCCCcCc-cccCCCCCCCeeeeeCCCCcccch-hhhcCcCCCEEEccCCcCcccchhccccccCc
Q 042413 244 FKRFKYLRVLNLGS-AVLDQYP-SGLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLETLEMPSSYIDQSPHDIWMMQKLM 320 (350)
Q Consensus 244 ~~~l~~L~~L~L~~-~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~ 320 (350)
+..+++|+.|+|++ |.++.+| ..++.|.+|++|+|++|.|+.+|+ .++.|++|+.|+|++|.+..+|..+....+|+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~ 106 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence 77788888888886 7888766 567888888888888888887654 56888888888888888888887655544588
Q ss_pred EEEeeccCC
Q 042413 321 HLYFYCISP 329 (350)
Q Consensus 321 ~L~l~~~~~ 329 (350)
.|++.+|..
T Consensus 107 ~l~l~~N~~ 115 (347)
T 2ifg_A 107 ELVLSGNPL 115 (347)
T ss_dssp EEECCSSCC
T ss_pred EEEeeCCCc
Confidence 888877754
No 134
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.89 E-value=4.2e-09 Score=97.19 Aligned_cols=132 Identities=16% Similarity=0.032 Sum_probs=91.4
Q ss_pred CCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCc-eeeEEEccCCCCCcCccccCCCCCC
Q 042413 196 LANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFK-YLRVLNLGSAVLDQYPSGLENLYLL 273 (350)
Q Consensus 196 ~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~l~~lp~~i~~l~~L 273 (350)
..+++++.+..+.. ..+........++..+.+.++.. ...+....|..+. .++.|+|++|.++.+|..+....+|
T Consensus 103 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~---i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L 179 (350)
T 4ay9_X 103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN---IHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL 179 (350)
T ss_dssp CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTT---CCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEE
T ss_pred ccccccccccccccccCCchhhcccchhhhhhhccccc---cccccccchhhcchhhhhhccccccccCCChhhccccch
Confidence 45677888877766 33332222222666666655433 2344445566654 6889999999999998888888889
Q ss_pred CeeeeeC-CCCcccchh-hhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCC
Q 042413 274 KYLKLNI-PSLKCLHSL-LCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTS 332 (350)
Q Consensus 274 ~~L~l~~-~~l~~lP~~-i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~ 332 (350)
+.|++++ |.++.+|+. +..+++|++|++++|.+..+|... +.+|++|.+.++...+.
T Consensus 180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--~~~L~~L~~l~~~~l~~ 238 (350)
T 4ay9_X 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRARSTYNLKK 238 (350)
T ss_dssp EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS--CTTCCEEECTTCTTCCC
T ss_pred hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh--hccchHhhhccCCCcCc
Confidence 9999975 678899875 488999999999999999998742 45666666655443333
No 135
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.85 E-value=5.3e-09 Score=96.21 Aligned_cols=81 Identities=19% Similarity=0.080 Sum_probs=72.5
Q ss_pred EEEccCC-CCCcCccccCCCCCCCeeeeeC-CCCcccc-hhhhcCcCCCEEEccCCcCcccch-hccccccCcEEEeecc
Q 042413 252 VLNLGSA-VLDQYPSGLENLYLLKYLKLNI-PSLKCLH-SLLCTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFYCI 327 (350)
Q Consensus 252 ~L~L~~~-~l~~lp~~i~~l~~L~~L~l~~-~~l~~lP-~~i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~ 327 (350)
.++++++ .++.+|. ++.+.+|++|+|++ |.++.+| ..++.|.+|+.|+|++|.+..+|+ .|++|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4588888 8999999 99999999999996 9999887 568999999999999998888876 6799999999999999
Q ss_pred CCCCCC
Q 042413 328 SPCTSK 333 (350)
Q Consensus 328 ~~~~~~ 333 (350)
.+...+
T Consensus 91 ~l~~~~ 96 (347)
T 2ifg_A 91 ALESLS 96 (347)
T ss_dssp CCSCCC
T ss_pred ccceeC
Confidence 877654
No 136
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.83 E-value=1.1e-09 Score=102.40 Aligned_cols=130 Identities=13% Similarity=0.123 Sum_probs=101.3
Q ss_pred CCeeEEEEecCcc------chhhc-cCC---------CCCCeeEEEEecCCCCCCCccchH---HHhcCCceeeEEEccC
Q 042413 197 ANVKRCFILKDLI------DFFSS-LKH---------SDMYLQSFLNHSSKNNHLNSKDYE---NFFKRFKYLRVLNLGS 257 (350)
Q Consensus 197 ~~~r~L~l~~~~~------~~~~~-~~~---------~~~~Lr~L~~~~~~~~~~~~~~~~---~~~~~l~~L~~L~L~~ 257 (350)
..+++|.+..+.+ .+... ... + +|++|.+.++... ....+ ..+..+++|+.|+|++
T Consensus 122 ~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~--~L~~L~L~~n~l~---~~~~~~l~~~l~~~~~L~~L~L~~ 196 (386)
T 2ca6_A 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP--PLRSIICGRNRLE---NGSMKEWAKTFQSHRLLHTVKMVQ 196 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCC--CCCEEECCSSCCT---GGGHHHHHHHHHHCTTCCEEECCS
T ss_pred CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCC--CCcEEECCCCCCC---cHHHHHHHHHHHhCCCcCEEECcC
Confidence 5688888888776 12221 122 5 9999999998873 22333 5677899999999999
Q ss_pred CCCC------cCccccCCCCCCCeeeeeCCCC-----cccchhhhcCcCCCEEEccCCcCcc-----cchhc--cccccC
Q 042413 258 AVLD------QYPSGLENLYLLKYLKLNIPSL-----KCLHSLLCTLLNLETLEMPSSYIDQ-----SPHDI--WMMQKL 319 (350)
Q Consensus 258 ~~l~------~lp~~i~~l~~L~~L~l~~~~l-----~~lP~~i~~l~~L~~L~l~~~~l~~-----lP~~i--~~L~~L 319 (350)
|.+. -.|..+..+++|++|+|++|.+ ..+|..+..+++|++|++++|.+.. +|..+ +++++|
T Consensus 197 n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L 276 (386)
T 2ca6_A 197 NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL 276 (386)
T ss_dssp SCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCC
T ss_pred CCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCe
Confidence 9987 2344788899999999999998 6789999999999999999997765 46776 448999
Q ss_pred cEEEeeccCCCC
Q 042413 320 MHLYFYCISPCT 331 (350)
Q Consensus 320 ~~L~l~~~~~~~ 331 (350)
++|++++|....
T Consensus 277 ~~L~L~~n~i~~ 288 (386)
T 2ca6_A 277 QTLRLQYNEIEL 288 (386)
T ss_dssp CEEECCSSCCBH
T ss_pred EEEECcCCcCCH
Confidence 999999987655
No 137
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.74 E-value=4.5e-09 Score=97.44 Aligned_cols=108 Identities=13% Similarity=0.090 Sum_probs=54.7
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCc-eeeEEEccCCCCCcCc-c----ccCCC-CCCCeeeeeCCCCcc-----cch
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFK-YLRVLNLGSAVLDQYP-S----GLENL-YLLKYLKLNIPSLKC-----LHS 288 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~l~~lp-~----~i~~l-~~L~~L~l~~~~l~~-----lP~ 288 (350)
+|+.|.+.++.........+...+..++ .|+.|+|++|.++..+ . .+... ++|++|+|++|.+.. +|.
T Consensus 139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~ 218 (362)
T 3goz_A 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY 218 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence 5666666555542111122333344443 5666666666655322 2 22233 366666666666554 555
Q ss_pred hhhcC-cCCCEEEccCCcCcccch-----hccccccCcEEEeeccC
Q 042413 289 LLCTL-LNLETLEMPSSYIDQSPH-----DIWMMQKLMHLYFYCIS 328 (350)
Q Consensus 289 ~i~~l-~~L~~L~l~~~~l~~lP~-----~i~~L~~L~~L~l~~~~ 328 (350)
.+..+ ++|++|++++|.+...+. .+..+++|+.|++++|.
T Consensus 219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 55443 366666666665544332 23455666666666654
No 138
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.69 E-value=6.6e-09 Score=96.34 Aligned_cols=110 Identities=12% Similarity=0.089 Sum_probs=53.0
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcC-CceeeEEEccCCCCC-----cCccccCCCC-CCCeeeeeCCCCccc-chhh--
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKR-FKYLRVLNLGSAVLD-----QYPSGLENLY-LLKYLKLNIPSLKCL-HSLL-- 290 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~L~~~~l~-----~lp~~i~~l~-~L~~L~l~~~~l~~l-P~~i-- 290 (350)
+|++|.+.++.........+...+.. .+.|+.|+|++|.++ .++..+..+. +|++|++++|.++.. +..+
T Consensus 110 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 189 (362)
T 3goz_A 110 TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAK 189 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHH
Confidence 56666666555421111111222333 245666666666555 2333334443 566666666655433 2222
Q ss_pred --hcC-cCCCEEEccCCcCcc-----cchhcccc-ccCcEEEeeccCCC
Q 042413 291 --CTL-LNLETLEMPSSYIDQ-----SPHDIWMM-QKLMHLYFYCISPC 330 (350)
Q Consensus 291 --~~l-~~L~~L~l~~~~l~~-----lP~~i~~L-~~L~~L~l~~~~~~ 330 (350)
..+ ++|++|++++|.+.. +|..+..+ ++|++|++++|...
T Consensus 190 ~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 190 FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 223 356666666665554 45555443 35666666655443
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.57 E-value=1e-08 Score=97.80 Aligned_cols=128 Identities=16% Similarity=0.084 Sum_probs=73.5
Q ss_pred CCeeEEEEecCccc------hhh-ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCc----eeeEEEccCCCCC----
Q 042413 197 ANVKRCFILKDLID------FFS-SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFK----YLRVLNLGSAVLD---- 261 (350)
Q Consensus 197 ~~~r~L~l~~~~~~------~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~----~L~~L~L~~~~l~---- 261 (350)
..+++|.+..+... ++. ...++ +|++|.+.++... .......+..++ +|+.|+|++|.++
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~--~L~~L~Ls~n~l~---~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNP--ALAELNLRSNELG---DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCT--TCCEEECTTCCCH---HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCC--CcCEEeCCCCcCC---hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 34666666666551 111 22345 6777777666541 112223333444 5777777777766
Q ss_pred -cCccccCCCCCCCeeeeeCCCCccc-chhhhc-----CcCCCEEEccCCcCcc-----cchhccccccCcEEEeeccCC
Q 042413 262 -QYPSGLENLYLLKYLKLNIPSLKCL-HSLLCT-----LLNLETLEMPSSYIDQ-----SPHDIWMMQKLMHLYFYCISP 329 (350)
Q Consensus 262 -~lp~~i~~l~~L~~L~l~~~~l~~l-P~~i~~-----l~~L~~L~l~~~~l~~-----lP~~i~~L~~L~~L~l~~~~~ 329 (350)
.+|..+..+++|++|++++|.+... +..+.. ..+|++|++++|.+.. ++..+..+++|++|++++|..
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 3466667777777777777766522 222222 4467777777775543 455566667777777777653
No 140
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.48 E-value=1.3e-07 Score=90.01 Aligned_cols=135 Identities=15% Similarity=0.137 Sum_probs=92.8
Q ss_pred CCeeEEEEecCccch--h----hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-cc----
Q 042413 197 ANVKRCFILKDLIDF--F----SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PS---- 265 (350)
Q Consensus 197 ~~~r~L~l~~~~~~~--~----~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~---- 265 (350)
..+++|.+..+.... + ........+|++|.+.++.........++..+..+++|+.|++++|.++.. +.
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 135 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE 135 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence 678899998887611 1 111111115999999988873211135677888999999999999987621 22
Q ss_pred c-cCCCCCCCeeeeeCCCCcc-----cchhhhcCcCCCEEEccCCcCcccc-hhcc-----ccccCcEEEeeccCCCC
Q 042413 266 G-LENLYLLKYLKLNIPSLKC-----LHSLLCTLLNLETLEMPSSYIDQSP-HDIW-----MMQKLMHLYFYCISPCT 331 (350)
Q Consensus 266 ~-i~~l~~L~~L~l~~~~l~~-----lP~~i~~l~~L~~L~l~~~~l~~lP-~~i~-----~L~~L~~L~l~~~~~~~ 331 (350)
. .....+|++|++++|.++. ++..+..+++|++|++++|.+...+ ..+. .+++|++|++++|....
T Consensus 136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 2 2235679999999998863 5677788899999999999765432 2232 35689999998886554
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.45 E-value=3.6e-08 Score=91.78 Aligned_cols=132 Identities=14% Similarity=0.037 Sum_probs=84.2
Q ss_pred CCeeEEEEecCccch---hhcc-CCCCCCeeEEEEecCCCCCCCccchHHHh-cCCceeeEEEccCCCCC-----cCccc
Q 042413 197 ANVKRCFILKDLIDF---FSSL-KHSDMYLQSFLNHSSKNNHLNSKDYENFF-KRFKYLRVLNLGSAVLD-----QYPSG 266 (350)
Q Consensus 197 ~~~r~L~l~~~~~~~---~~~~-~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~L~~~~l~-----~lp~~ 266 (350)
..++.|.+..+.+.. .... .++ +++.|.+.+|.........+...+ ...+.|+.|+|++|.++ .++..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~--~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 178 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFL--RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG 178 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHH--TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHH--hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH
Confidence 467778877776621 1111 234 778888877766310011111222 34677888888888875 24555
Q ss_pred cCCCCCCCeeeeeCCCCc-----ccchhhhcCcCCCEEEccCCcCcc-----cchhccccccCcEEEeeccCCC
Q 042413 267 LENLYLLKYLKLNIPSLK-----CLHSLLCTLLNLETLEMPSSYIDQ-----SPHDIWMMQKLMHLYFYCISPC 330 (350)
Q Consensus 267 i~~l~~L~~L~l~~~~l~-----~lP~~i~~l~~L~~L~l~~~~l~~-----lP~~i~~L~~L~~L~l~~~~~~ 330 (350)
+..+++|++|+|++|.+. .++..+...++|++|++++|.++. ++..+...++|++|++++|.+.
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 567778888888888775 245566677788888888886653 4445566678888888887543
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.39 E-value=7e-08 Score=89.83 Aligned_cols=106 Identities=15% Similarity=0.083 Sum_probs=55.1
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-----cccc-CCCCCCCeeeeeCCCCcc-----cchh
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-----PSGL-ENLYLLKYLKLNIPSLKC-----LHSL 289 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-----p~~i-~~l~~L~~L~l~~~~l~~-----lP~~ 289 (350)
+|+.|.+.++... ..........+++|+.|+|++|.++.. ...+ ....+|++|+|++|.++. ++..
T Consensus 102 ~L~~L~Ls~n~l~---~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 178 (372)
T 3un9_A 102 ALDEVNLASCQLD---PAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG 178 (372)
T ss_dssp CEEEEECTTCCCC---HHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH
T ss_pred CceEEEecCCCCC---HHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH
Confidence 6666666666542 111222233344566666666665421 1111 234556666666666542 4444
Q ss_pred hhcCcCCCEEEccCCcCcc-----cchhccccccCcEEEeeccCC
Q 042413 290 LCTLLNLETLEMPSSYIDQ-----SPHDIWMMQKLMHLYFYCISP 329 (350)
Q Consensus 290 i~~l~~L~~L~l~~~~l~~-----lP~~i~~L~~L~~L~l~~~~~ 329 (350)
+..+++|++|+|++|.++. ++..+...++|+.|++++|.+
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 4556666666666665442 234455555666666666543
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.33 E-value=3.2e-07 Score=90.22 Aligned_cols=108 Identities=15% Similarity=0.044 Sum_probs=54.3
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC-----cCccccCCCCCCCeeeeeCCCCcccchhhhcCcC
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD-----QYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLN 295 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~ 295 (350)
+|+.|.+.++.........++..+..+++|+.|++++|.++ .++..+..+++|++|++++|.+..+|..++.+++
T Consensus 165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~ 244 (592)
T 3ogk_B 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAAN 244 (592)
T ss_dssp TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTT
T ss_pred CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhH
Confidence 55555555543211000112333444555555555555543 2222333445555555555555445444444444
Q ss_pred CCEEEc---------------------------cCCcCcccchhccccccCcEEEeeccC
Q 042413 296 LETLEM---------------------------PSSYIDQSPHDIWMMQKLMHLYFYCIS 328 (350)
Q Consensus 296 L~~L~l---------------------------~~~~l~~lP~~i~~L~~L~~L~l~~~~ 328 (350)
|+.|++ +++....+|..+..+++|++|++++|.
T Consensus 245 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 245 LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp CCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred HHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence 444444 444445566667777788888887765
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.29 E-value=2.3e-07 Score=91.20 Aligned_cols=129 Identities=12% Similarity=0.081 Sum_probs=79.2
Q ss_pred CCeeEEEEecCccc------hhh-ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcc----
Q 042413 197 ANVKRCFILKDLID------FFS-SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPS---- 265 (350)
Q Consensus 197 ~~~r~L~l~~~~~~------~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~---- 265 (350)
..+++|.+..+... +.. ...++ +|++|.+..+..........+..+.++++|+.|++++|.+..+|.
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~--~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNT--SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCC--CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCC--CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 45666666655431 111 12344 677776666655211123344455566667777766665544443
Q ss_pred -----------------------ccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcc--cchhccccccCc
Q 042413 266 -----------------------GLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQ--SPHDIWMMQKLM 320 (350)
Q Consensus 266 -----------------------~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~--lP~~i~~L~~L~ 320 (350)
.++.+++|+.|+++++....+|..+..+++|++|++++|.+.. ++..+..+++|+
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 4445555555555555556778888899999999999996532 334468899999
Q ss_pred EEEeecc
Q 042413 321 HLYFYCI 327 (350)
Q Consensus 321 ~L~l~~~ 327 (350)
+|+++++
T Consensus 322 ~L~L~~~ 328 (592)
T 3ogk_B 322 VLETRNV 328 (592)
T ss_dssp EEEEEGG
T ss_pred EEeccCc
Confidence 9999844
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.27 E-value=3.6e-07 Score=76.29 Aligned_cols=109 Identities=13% Similarity=0.052 Sum_probs=80.0
Q ss_pred CeeEEEEecC-CCCCCCccchHHHhcCCceeeEEEccCCCCC-----cCccccCCCCCCCeeeeeCCCCcc-----cchh
Q 042413 221 YLQSFLNHSS-KNNHLNSKDYENFFKRFKYLRVLNLGSAVLD-----QYPSGLENLYLLKYLKLNIPSLKC-----LHSL 289 (350)
Q Consensus 221 ~Lr~L~~~~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~l~~-----lP~~ 289 (350)
.|++|.+.++ .........+...+...+.|++|+|++|.+. .+...+...++|++|+|++|.|.. +...
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~ 116 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence 8888888887 6532112234456777888999999999886 244555566789999999998863 5667
Q ss_pred hhcCcCCCEEEc--cCCcCcc-----cchhccccccCcEEEeeccCC
Q 042413 290 LCTLLNLETLEM--PSSYIDQ-----SPHDIWMMQKLMHLYFYCISP 329 (350)
Q Consensus 290 i~~l~~L~~L~l--~~~~l~~-----lP~~i~~L~~L~~L~l~~~~~ 329 (350)
+...++|++|++ ++|.++. +...+...++|++|++++|..
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 777888999999 7786654 445666778899999987743
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.12 E-value=7.6e-07 Score=87.51 Aligned_cols=127 Identities=12% Similarity=0.126 Sum_probs=91.0
Q ss_pred CCeeEEEEecCcc--chhhcc--CCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCc-----Ccccc
Q 042413 197 ANVKRCFILKDLI--DFFSSL--KHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQ-----YPSGL 267 (350)
Q Consensus 197 ~~~r~L~l~~~~~--~~~~~~--~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-----lp~~i 267 (350)
..+++|.+..+.. ..+... .++ +|++|.+.++..- ....++..+.++++|++|+|++|.++. ++...
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~--~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFK--NFKVLVLSSCEGF--STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCT--TCCEEEEESCEEE--EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCC--CCcEEeCCCcCCC--CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 4688899988766 222222 466 9999999887431 122245566689999999999998652 33344
Q ss_pred CCCCCCCeeeeeCCC--Cc--ccchhhhcCcCCCEEEccCC-cCcccchhccccccCcEEEeecc
Q 042413 268 ENLYLLKYLKLNIPS--LK--CLHSLLCTLLNLETLEMPSS-YIDQSPHDIWMMQKLMHLYFYCI 327 (350)
Q Consensus 268 ~~l~~L~~L~l~~~~--l~--~lP~~i~~l~~L~~L~l~~~-~l~~lP~~i~~L~~L~~L~l~~~ 327 (350)
..+++|++|++++|. +. .++.-+..+++|++|++++| .+..+|..+.++++|++|+++.+
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 467899999999886 32 34444466899999999999 77778888888889999986544
No 147
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.10 E-value=1.9e-06 Score=76.10 Aligned_cols=79 Identities=24% Similarity=0.100 Sum_probs=54.7
Q ss_pred cCCceeeEEEccCCCCCcCc---cccCCCCCCCeeeeeCCCCcccchhhhcCc--CCCEEEccCCcCc-ccch-------
Q 042413 245 KRFKYLRVLNLGSAVLDQYP---SGLENLYLLKYLKLNIPSLKCLHSLLCTLL--NLETLEMPSSYID-QSPH------- 311 (350)
Q Consensus 245 ~~l~~L~~L~L~~~~l~~lp---~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~--~L~~L~l~~~~l~-~lP~------- 311 (350)
.+++.|+.|+|++|.++.++ ..++.+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.+. .+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 56778888888888877543 4556778888888888887766 3355555 7888888888554 3442
Q ss_pred hccccccCcEEEe
Q 042413 312 DIWMMQKLMHLYF 324 (350)
Q Consensus 312 ~i~~L~~L~~L~l 324 (350)
.+..+++|+.||-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 3567777777765
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.10 E-value=4.1e-06 Score=76.26 Aligned_cols=100 Identities=16% Similarity=0.097 Sum_probs=78.3
Q ss_pred CCceeeEEEccCCCCCcCcc-ccCCCCCCCeeeeeCCCCcccch-hhhcCcCCC-EEEccCCcCcccch-hccccccCcE
Q 042413 246 RFKYLRVLNLGSAVLDQYPS-GLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLE-TLEMPSSYIDQSPH-DIWMMQKLMH 321 (350)
Q Consensus 246 ~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~-~L~l~~~~l~~lP~-~i~~L~~L~~ 321 (350)
.+++|+.|+|++|.++.+|. .+.++.+|+.+++.+| ++.+++ .+..+.+|+ .+++.+ .+..+++ .|..+++|+.
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 48899999999999998884 5788999999999987 888875 458899999 999988 7777764 7888999999
Q ss_pred EEeeccCCCCCCCCcccccccccccccC
Q 042413 322 LYFYCISPCTSKNYSSSLKNLIFISALH 349 (350)
Q Consensus 322 L~l~~~~~~~~~~~~~~l~~L~~L~~L~ 349 (350)
|+++++...... ...+.++.+|+.++
T Consensus 302 l~l~~n~i~~I~--~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKITTLG--DELFGNGVPSKLIY 327 (329)
T ss_dssp EEECSSCCCEEC--TTTTCTTCCCCEEE
T ss_pred EEeCCCccCccc--hhhhcCCcchhhhc
Confidence 999777665542 23345555555443
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.03 E-value=1.3e-05 Score=74.02 Aligned_cols=128 Identities=13% Similarity=0.067 Sum_probs=84.8
Q ss_pred CCCeeEEEEecCc-cchhhccCCCCCCeeEEEEecCCCCCCCccchHHH-hcCCceeeEEEccCC--C------CCcCcc
Q 042413 196 LANVKRCFILKDL-IDFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENF-FKRFKYLRVLNLGSA--V------LDQYPS 265 (350)
Q Consensus 196 ~~~~r~L~l~~~~-~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~~--~------l~~lp~ 265 (350)
...++.|.+.++. ...+. ...+ +|+.|.+..+... ....... ...+++|+.|+|+.+ . +..+..
T Consensus 171 ~P~L~~L~L~g~~~l~l~~-~~~~--~L~~L~L~~~~l~---~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLSIGK-KPRP--NLKSLEIISGGLP---DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp CTTCCEEEEECCBTCBCCS-CBCT--TCSEEEEECSBCC---HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred CCCCcEEEEeCCCCceecc-ccCC--CCcEEEEecCCCC---hHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 4578999998763 23333 2345 9999999877652 2222111 237889999998632 1 222222
Q ss_pred cc--CCCCCCCeeeeeCCCCc-ccchhh---hcCcCCCEEEccCCcCcc-----cchhccccccCcEEEeeccCC
Q 042413 266 GL--ENLYLLKYLKLNIPSLK-CLHSLL---CTLLNLETLEMPSSYIDQ-----SPHDIWMMQKLMHLYFYCISP 329 (350)
Q Consensus 266 ~i--~~l~~L~~L~l~~~~l~-~lP~~i---~~l~~L~~L~l~~~~l~~-----lP~~i~~L~~L~~L~l~~~~~ 329 (350)
.+ ..+++|++|+|++|.+. ..+..+ ..+++|++|+|+.|.++. ++..+.++++|+.|+++.|.+
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 23 35789999999998876 233333 357899999999987665 566667889999999988753
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.98 E-value=9.5e-07 Score=77.99 Aligned_cols=87 Identities=20% Similarity=0.184 Sum_probs=63.7
Q ss_pred hcCCceeeE--EEccCCCCCcCccc----cCCCCCCCeeeeeCCCCccc---chhhhcCcCCCEEEccCCcCcccchhcc
Q 042413 244 FKRFKYLRV--LNLGSAVLDQYPSG----LENLYLLKYLKLNIPSLKCL---HSLLCTLLNLETLEMPSSYIDQSPHDIW 314 (350)
Q Consensus 244 ~~~l~~L~~--L~L~~~~l~~lp~~----i~~l~~L~~L~l~~~~l~~l---P~~i~~l~~L~~L~l~~~~l~~lP~~i~ 314 (350)
+...+.|.. ++++.|....++.. ..++++|+.|+|++|.|..+ |..++.+++|+.|+|++|.+..+ ..+.
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~ 215 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELD 215 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhh
Confidence 333444444 56666654333321 24688999999999998765 46678999999999999988887 3466
Q ss_pred ccc--cCcEEEeeccCCCC
Q 042413 315 MMQ--KLMHLYFYCISPCT 331 (350)
Q Consensus 315 ~L~--~L~~L~l~~~~~~~ 331 (350)
.+. +|+.|++++|..+.
T Consensus 216 ~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp GGTTSCCSEEECTTSTTGG
T ss_pred hcccCCcceEEccCCcCcc
Confidence 666 99999999998775
No 151
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.94 E-value=9.6e-07 Score=86.78 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=17.7
Q ss_pred hcCcCCCEEEccCCcCcc--cchhccccccCcEEEeecc
Q 042413 291 CTLLNLETLEMPSSYIDQ--SPHDIWMMQKLMHLYFYCI 327 (350)
Q Consensus 291 ~~l~~L~~L~l~~~~l~~--lP~~i~~L~~L~~L~l~~~ 327 (350)
..+++|++|++++|.+.. ++..+.++++|++|++++|
T Consensus 286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 344555555555554321 1222345555555555544
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.92 E-value=1.4e-05 Score=72.73 Aligned_cols=100 Identities=17% Similarity=0.042 Sum_probs=86.2
Q ss_pred CCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCCCCC-eeeeeCCCCcccc-hhhhcC
Q 042413 217 HSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLK-YLKLNIPSLKCLH-SLLCTL 293 (350)
Q Consensus 217 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~-~L~l~~~~l~~lP-~~i~~l 293 (350)
++ +|+++.+..+.. ..+....|.++++|+.|+|..| ++.++ ..+.++.+|+ .+.+.+ .++.++ ..+..+
T Consensus 225 ~~--~L~~l~L~~n~i----~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c 296 (329)
T 3sb4_A 225 MP--NLVSLDISKTNA----TTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGC 296 (329)
T ss_dssp CT--TCCEEECTTBCC----CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTC
T ss_pred cC--CCeEEECCCCCc----ceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCC
Confidence 56 999999988766 5677788999999999999998 88776 5678999999 999998 788886 567899
Q ss_pred cCCCEEEccCCcCcccch-hccccccCcEEEe
Q 042413 294 LNLETLEMPSSYIDQSPH-DIWMMQKLMHLYF 324 (350)
Q Consensus 294 ~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l 324 (350)
.+|+.+++++|.+..++. .|..+++|+.++.
T Consensus 297 ~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 297 DNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999999999999999987 7888999998864
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.91 E-value=9.5e-06 Score=67.56 Aligned_cols=93 Identities=14% Similarity=0.109 Sum_probs=75.4
Q ss_pred cchHHHhcCCceeeEEEccCC-CCC-----cCccccCCCCCCCeeeeeCCCCc-----ccchhhhcCcCCCEEEccCCcC
Q 042413 238 KDYENFFKRFKYLRVLNLGSA-VLD-----QYPSGLENLYLLKYLKLNIPSLK-----CLHSLLCTLLNLETLEMPSSYI 306 (350)
Q Consensus 238 ~~~~~~~~~l~~L~~L~L~~~-~l~-----~lp~~i~~l~~L~~L~l~~~~l~-----~lP~~i~~l~~L~~L~l~~~~l 306 (350)
..+...+...+.|+.|+|++| .+. .+...+...++|++|+|++|.+. .+...+...++|++|+|++|.+
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 345567888999999999999 876 35566777899999999999986 3556667778999999999977
Q ss_pred cc-----cchhccccccCcEEEe--eccCCC
Q 042413 307 DQ-----SPHDIWMMQKLMHLYF--YCISPC 330 (350)
Q Consensus 307 ~~-----lP~~i~~L~~L~~L~l--~~~~~~ 330 (350)
+. +...+...++|++|++ ++|.+.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 65 5667888889999999 666543
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.78 E-value=3.7e-05 Score=63.16 Aligned_cols=80 Identities=11% Similarity=0.143 Sum_probs=39.1
Q ss_pred eeeEEEccCCCCCc-CccccCCCCCCCeeeeeCCC-Ccc-cchhhhcC----cCCCEEEccCC-cCcccc-hhccccccC
Q 042413 249 YLRVLNLGSAVLDQ-YPSGLENLYLLKYLKLNIPS-LKC-LHSLLCTL----LNLETLEMPSS-YIDQSP-HDIWMMQKL 319 (350)
Q Consensus 249 ~L~~L~L~~~~l~~-lp~~i~~l~~L~~L~l~~~~-l~~-lP~~i~~l----~~L~~L~l~~~-~l~~lP-~~i~~L~~L 319 (350)
.|+.||++++.++. =-..+..+++|+.|+|++|. ++. --..++.+ ++|+.|++++| .++.-- ..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 35555666555441 11334555666666666653 431 11223332 24666666666 444310 134455666
Q ss_pred cEEEeeccC
Q 042413 320 MHLYFYCIS 328 (350)
Q Consensus 320 ~~L~l~~~~ 328 (350)
++|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666666553
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.31 E-value=0.00027 Score=57.97 Aligned_cols=84 Identities=13% Similarity=0.151 Sum_probs=62.6
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCC-CCc-CccccCCC----CCCCeeeeeCCC-Cc--ccchhhh
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAV-LDQ-YPSGLENL----YLLKYLKLNIPS-LK--CLHSLLC 291 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~-lp~~i~~l----~~L~~L~l~~~~-l~--~lP~~i~ 291 (350)
+|+.|.+.++... ..-+ ..+..+++|+.|+|++|. ++. --..+..+ ++|++|+|++|. ++ .+ ..+.
T Consensus 62 ~L~~LDLs~~~It---d~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSCIM---SIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALH 136 (176)
T ss_dssp CEEEEEEESCCCC---GGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGG
T ss_pred eEeEEeCcCCCcc---HHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHh
Confidence 7999999998863 2222 446789999999999996 762 22345554 479999999985 76 23 4567
Q ss_pred cCcCCCEEEccCC-cCccc
Q 042413 292 TLLNLETLEMPSS-YIDQS 309 (350)
Q Consensus 292 ~l~~L~~L~l~~~-~l~~l 309 (350)
++++|+.|++++| .++..
T Consensus 137 ~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp GCTTCCEEEEESCTTCCCH
T ss_pred cCCCCCEEECCCCCCCCch
Confidence 8999999999999 67653
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.15 E-value=0.0016 Score=60.02 Aligned_cols=83 Identities=16% Similarity=0.085 Sum_probs=41.0
Q ss_pred CceeeEEEccCCCCC-cCccccC--CCCCCCeeeeeCC--C------Ccccchhh--hcCcCCCEEEccCCcCcc-cchh
Q 042413 247 FKYLRVLNLGSAVLD-QYPSGLE--NLYLLKYLKLNIP--S------LKCLHSLL--CTLLNLETLEMPSSYIDQ-SPHD 312 (350)
Q Consensus 247 l~~L~~L~L~~~~l~-~lp~~i~--~l~~L~~L~l~~~--~------l~~lP~~i--~~l~~L~~L~l~~~~l~~-lP~~ 312 (350)
+++|+.|+|..+.+. .....+. .+++|+.|+|+.+ . +..+.+.+ +.+++|++|++++|.+.. .+..
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 556666666655544 1111222 4666676666421 1 21222222 245677777777664432 1222
Q ss_pred c---cccccCcEEEeeccCC
Q 042413 313 I---WMMQKLMHLYFYCISP 329 (350)
Q Consensus 313 i---~~L~~L~~L~l~~~~~ 329 (350)
+ ..+++|++|+++.|..
T Consensus 272 la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCC
T ss_pred HHhCccCCCCCEEECCCCCC
Confidence 2 2466777777766543
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.76 E-value=0.0046 Score=57.72 Aligned_cols=91 Identities=14% Similarity=0.079 Sum_probs=59.8
Q ss_pred cchHHHhcCCceeeEEEccCCCCC-----cCc-cccCCCCCCCeeeeeCCCCcccch-hhhcCcCCCEEEccCCcCcccc
Q 042413 238 KDYENFFKRFKYLRVLNLGSAVLD-----QYP-SGLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLETLEMPSSYIDQSP 310 (350)
Q Consensus 238 ~~~~~~~~~l~~L~~L~L~~~~l~-----~lp-~~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~~~l~~lP 310 (350)
.+....|.++++|+.+++.++.+. .++ ..+.++.+|+.+.+.+ .++.++. .+..+.+|+.+.+..+ +..++
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 344567777778888887776654 333 4566777788887773 4666654 3466778888887544 55554
Q ss_pred h-hccccccCcEEEeeccCCCC
Q 042413 311 H-DIWMMQKLMHLYFYCISPCT 331 (350)
Q Consensus 311 ~-~i~~L~~L~~L~l~~~~~~~ 331 (350)
. .|..+ +|+.+++.++....
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCCB
T ss_pred HHhCCCC-CCCEEEEcCCCCcc
Confidence 4 56666 78888887764433
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.71 E-value=0.0035 Score=58.54 Aligned_cols=102 Identities=17% Similarity=0.190 Sum_probs=55.1
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccch-hhhcCcCCCEE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLETL 299 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~~L 299 (350)
+|+++.+.. . ...+....|.++++|+.++++.|.++.+|...-...+|+.+.+..+ ++.++. .+..+.+|+.+
T Consensus 158 ~L~~i~lp~-~----l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l 231 (401)
T 4fdw_A 158 TVQEIVFPS-T----LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTI 231 (401)
T ss_dssp CCCEEECCT-T----CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCE
T ss_pred CceEEEeCC-C----ccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEE
Confidence 556655543 1 1334445677777777777777666665544333455555555432 444432 22344444444
Q ss_pred EccCC---------------------cCcccch-hccccccCcEEEeeccC
Q 042413 300 EMPSS---------------------YIDQSPH-DIWMMQKLMHLYFYCIS 328 (350)
Q Consensus 300 ~l~~~---------------------~l~~lP~-~i~~L~~L~~L~l~~~~ 328 (350)
++..+ .+..++. .|..+++|+.+.+.++.
T Consensus 232 ~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 232 EIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGST 282 (401)
T ss_dssp ECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSC
T ss_pred ecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCcc
Confidence 44332 3444433 56667777777776654
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.52 E-value=0.0037 Score=48.55 Aligned_cols=53 Identities=21% Similarity=0.176 Sum_probs=42.7
Q ss_pred eEEEccCCCCC--cCccccCCCCCCCeeeeeCCCCcccchhh-hcCcCCCEEEccCCc
Q 042413 251 RVLNLGSAVLD--QYPSGLENLYLLKYLKLNIPSLKCLHSLL-CTLLNLETLEMPSSY 305 (350)
Q Consensus 251 ~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~l~~lP~~i-~~l~~L~~L~l~~~~ 305 (350)
..++.++++++ .+|..+. .+|++|+|++|.|+.+|... ..+.+|++|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 36788888888 8887654 46889999999999888754 778899999999884
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.13 E-value=0.0069 Score=46.97 Aligned_cols=54 Identities=9% Similarity=0.052 Sum_probs=44.8
Q ss_pred CeeeeeCCCCc--ccchhhhcCcCCCEEEccCCcCcccchh-ccccccCcEEEeeccCC
Q 042413 274 KYLKLNIPSLK--CLHSLLCTLLNLETLEMPSSYIDQSPHD-IWMMQKLMHLYFYCISP 329 (350)
Q Consensus 274 ~~L~l~~~~l~--~lP~~i~~l~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~~~~ 329 (350)
..++.++++++ .+|..+. .+|++|+|++|.+..+|.+ |..+++|+.|++++|..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 46778888888 8997643 4799999999999999884 67799999999998743
No 161
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.39 E-value=0.15 Score=45.80 Aligned_cols=144 Identities=15% Similarity=0.113 Sum_probs=86.8
Q ss_pred CCcEEEEEeCChHHHhhc----ccccCCCCC-CCceEEcCCCCCChhhhhhccc--ccc-----------------CCch
Q 042413 18 NGSRVLITVTDPELLLSL----EMENGEKIR-PDSVLNGGPMIRLKHESWQFFI--LHY-----------------GSMP 73 (350)
Q Consensus 18 ~GSrIivTTR~~~v~~~~----~~~~~~~~~-~~~~~~l~~L~~~~~~s~~Lf~--f~~-----------------~GlP 73 (350)
++.++|+|++...+.... .... +-+| ....+++.+|+ .+|+.+++. |+. +|.|
T Consensus 163 ~~~~~il~g~~~~~l~~~l~~~~~~~-~l~~~~~~~i~l~pl~--~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P 239 (350)
T 2qen_A 163 PNLKIILTGSEVGLLHDFLKITDYES-PLYGRIAGEVLVKPFD--KDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIP 239 (350)
T ss_dssp TTEEEEEEESSHHHHHHHHCTTCTTS-TTTTCCCEEEECCCCC--HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCH
T ss_pred CCeEEEEECCcHHHHHHHHhhcCCCC-ccccCccceeeCCCCC--HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCH
Confidence 478899999987653321 1100 0011 12579999999 999999987 421 9999
Q ss_pred hHHHHHHHHHH---HHHHh---hhc---------cCCC---ChhhHHHHhhhhcCCCCceeeHHHHHHHHHHcCCCCCCC
Q 042413 74 LENYFLGEAFL---TVWRQ---IYT---------VMEL---PFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNG 135 (350)
Q Consensus 74 Lai~~lg~~L~---~~W~~---~l~---------y~~L---~~~lk~cfl~~a~Fp~~~~i~~~~li~~w~a~g~i~~~~ 135 (350)
+++..++..+. ..|.. +.+ +..+ ++..+..+..+|+ + .++...+.....+.. ... +
T Consensus 240 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~~~~~~l~~~~~~~~-~~~-~ 313 (350)
T 2qen_A 240 GWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIAL---G-YNRWSLIRDYLAVKG-TKI-P 313 (350)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-CCSHHHHHHHHHHTT-CCC-C
T ss_pred HHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-CCCHHHHHHHHHHHh-CCC-C
Confidence 99999887543 11110 000 2233 6778888888887 2 234455555433221 000 1
Q ss_pred hhHHHHHHHHHHHcCcceeeecCCCCCeeEEEeCHHHHHHH
Q 042413 136 EETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSL 176 (350)
Q Consensus 136 e~~~~~~~~~Lv~r~li~~~~~~~~g~~~~~~mhdli~dl~ 176 (350)
......+++.|++.++|.... + .+.-.|.++++..
T Consensus 314 ~~~~~~~l~~L~~~gli~~~~----~--~y~~~~p~~~~~~ 348 (350)
T 2qen_A 314 EPRLYALLENLKKMNWIVEED----N--TYKIADPVVATVL 348 (350)
T ss_dssp HHHHHHHHHHHHHTTSEEEET----T--EEEESSHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEecC----C--EEEEecHHHHHHH
Confidence 456778999999999997652 2 2234567777654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.26 E-value=0.01 Score=49.45 Aligned_cols=107 Identities=9% Similarity=-0.002 Sum_probs=62.9
Q ss_pred CeeEEEEecC-CCCCCCccchHHHhcCCceeeEEEccCCCCC-----cCccccCCCCCCCeeeeeCCCCc-----ccchh
Q 042413 221 YLQSFLNHSS-KNNHLNSKDYENFFKRFKYLRVLNLGSAVLD-----QYPSGLENLYLLKYLKLNIPSLK-----CLHSL 289 (350)
Q Consensus 221 ~Lr~L~~~~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~l~-----~lP~~ 289 (350)
.|+.|.+..+ .+...-...+...+..-+.|+.|+|++|.+. .+-+.+..=+.|+.|+|++|.|. .|-+.
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 6777777653 3321011234455666777888888888776 23333444466888888888775 23334
Q ss_pred hhcCcCCCEEEccCCc---Cc-----ccchhccccccCcEEEeecc
Q 042413 290 LCTLLNLETLEMPSSY---ID-----QSPHDIWMMQKLMHLYFYCI 327 (350)
Q Consensus 290 i~~l~~L~~L~l~~~~---l~-----~lP~~i~~L~~L~~L~l~~~ 327 (350)
+..=..|++|+|++|. ++ .+-+.+..-++|+.|+++.+
T Consensus 122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 4444568888887552 22 23334555567777777544
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.81 E-value=0.034 Score=46.27 Aligned_cols=89 Identities=12% Similarity=0.091 Sum_probs=67.7
Q ss_pred chHHHhcCCceeeEEEccCC-CCC-----cCccccCCCCCCCeeeeeCCCCc-----ccchhhhcCcCCCEEEccCCcCc
Q 042413 239 DYENFFKRFKYLRVLNLGSA-VLD-----QYPSGLENLYLLKYLKLNIPSLK-----CLHSLLCTLLNLETLEMPSSYID 307 (350)
Q Consensus 239 ~~~~~~~~l~~L~~L~L~~~-~l~-----~lp~~i~~l~~L~~L~l~~~~l~-----~lP~~i~~l~~L~~L~l~~~~l~ 307 (350)
.+...+.+-+.|+.|+|+++ .+. .+-+.+..-..|+.|+|++|.|. .|-+.+..=+.|++|+|++|.++
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 44556677889999999986 665 34556666788999999999885 44555656688999999999775
Q ss_pred c-----cchhccccccCcEEEeecc
Q 042413 308 Q-----SPHDIWMMQKLMHLYFYCI 327 (350)
Q Consensus 308 ~-----lP~~i~~L~~L~~L~l~~~ 327 (350)
. +-+.+..-+.|+.|+++++
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCC
Confidence 3 3345666678999999865
No 164
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.40 E-value=0.65 Score=42.64 Aligned_cols=133 Identities=14% Similarity=0.078 Sum_probs=79.5
Q ss_pred CcEEEEEeCChHHHhhcc---cccCCCCCCCceEEcCCCCCChhhhhhccc------ccc---------------C----
Q 042413 19 GSRVLITVTDPELLLSLE---MENGEKIRPDSVLNGGPMIRLKHESWQFFI------LHY---------------G---- 70 (350)
Q Consensus 19 GSrIivTTR~~~v~~~~~---~~~~~~~~~~~~~~l~~L~~~~~~s~~Lf~------f~~---------------~---- 70 (350)
.-.||+||++..+..... ... .......+++.+++ .++++++|. |.. +
T Consensus 179 ~v~lI~~~~~~~~~~~l~~~~~~~--~~~~~~~i~l~~l~--~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 179 RIGFLLVASDVRALSYMREKIPQV--ESQIGFKLHLPAYK--SRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKG 254 (412)
T ss_dssp BEEEEEEEEETHHHHHHHHHCHHH--HTTCSEEEECCCCC--HHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGT
T ss_pred eEEEEEEeccccHHHHHhhhcchh--hhhcCCeeeeCCCC--HHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhcc
Confidence 345888998766543222 000 00011349999999 999999995 221 6
Q ss_pred --CchhHHHHHHHH-HH------------HHHHhhh-----c------cCCCChhhHHHHhhhhcCC--CCceeeHHHHH
Q 042413 71 --SMPLENYFLGEA-FL------------TVWRQIY-----T------VMELPFHLKVCCIYLCVFP--PSIEISTRQLY 122 (350)
Q Consensus 71 --GlPLai~~lg~~-L~------------~~W~~~l-----~------y~~L~~~lk~cfl~~a~Fp--~~~~i~~~~li 122 (350)
|.|..+..+... .. +.+..+. . ++.||.+.+.++..+|.+. .+..++..++.
T Consensus 255 ~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~ 334 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLR 334 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHH
Confidence 999765554432 21 1222111 1 6889999999998888764 23356666655
Q ss_pred HHHH--H---cCCCCCCChhHHHHHHHHHHHcCcceeee
Q 042413 123 QLWV--A---EGFIPYNGEETAEHYLKELIHRGFIKVSK 156 (350)
Q Consensus 123 ~~w~--a---~g~i~~~~e~~~~~~~~~Lv~r~li~~~~ 156 (350)
..+. + .|. ...+......+++.|++.++|....
T Consensus 335 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 335 QRYEDASLTMYNV-KPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHHHHHHHSCC-CCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHhhcCC-CCCCHHHHHHHHHHHHhCCCEEeec
Confidence 5442 2 121 1102455678999999999998754
No 165
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.10 E-value=0.43 Score=42.70 Aligned_cols=140 Identities=15% Similarity=0.146 Sum_probs=87.9
Q ss_pred CCcEEEEEeCChHHHhhc----ccccCCCCC-CCceEEcCCCCCChhhhhhccc--ccc---------------CCchhH
Q 042413 18 NGSRVLITVTDPELLLSL----EMENGEKIR-PDSVLNGGPMIRLKHESWQFFI--LHY---------------GSMPLE 75 (350)
Q Consensus 18 ~GSrIivTTR~~~v~~~~----~~~~~~~~~-~~~~~~l~~L~~~~~~s~~Lf~--f~~---------------~GlPLa 75 (350)
++.++|+|+|........ .... +-++ ....+++.+|+ .+++.+++. |+. +|.|++
T Consensus 169 ~~~~~i~~g~~~~~l~~~l~~~~~~~-~l~~r~~~~i~l~~l~--~~e~~~~l~~~~~~~~~~~~~~~~i~~~t~G~P~~ 245 (357)
T 2fna_A 169 KRIKFIMSGSEMGLLYDYLRVEDPES-PLFGRAFSTVELKPFS--REEAIEFLRRGFQEADIDFKDYEVVYEKIGGIPGW 245 (357)
T ss_dssp TTEEEEEEESSHHHHHHHTTTTCTTS-TTTTCCCEEEEECCCC--HHHHHHHHHHHHHHHTCCCCCHHHHHHHHCSCHHH
T ss_pred CCeEEEEEcCchHHHHHHHhccCCCC-ccccCccceeecCCCC--HHHHHHHHHHHHHHcCCCCCcHHHHHHHhCCCHHH
Confidence 477999999987653321 1100 0111 12679999999 999999997 431 999999
Q ss_pred HHHHHHHHH-----HHHH-h----h---hc-------cC--CCChhhHHHHhhhhcCCCCceeeHHHHHHHHH-HcCC-C
Q 042413 76 NYFLGEAFL-----TVWR-Q----I---YT-------VM--ELPFHLKVCCIYLCVFPPSIEISTRQLYQLWV-AEGF-I 131 (350)
Q Consensus 76 i~~lg~~L~-----~~W~-~----~---l~-------y~--~L~~~lk~cfl~~a~Fp~~~~i~~~~li~~w~-a~g~-i 131 (350)
+..++..+. ..|- . + +. ++ .|++..+..+..+|+ +. +...+..... ..|. +
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g~--~~~~l~~~~~~~~g~~~ 320 (357)
T 2fna_A 246 LTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSK---CG--KWSDVKRALELEEGIEI 320 (357)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---CB--CHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc---CC--CHHHHHHHHHHhcCCCC
Confidence 999987764 1221 0 1 10 11 578888999998887 32 4444443221 1231 1
Q ss_pred CCCChhHHHHHHHHHHHcCcceeeecCCCCCeeEEE-eCHHHHHH
Q 042413 132 PYNGEETAEHYLKELIHRGFIKVSKRRARDTIKSCY-VPSFIYTS 175 (350)
Q Consensus 132 ~~~~e~~~~~~~~~Lv~r~li~~~~~~~~g~~~~~~-mhdli~dl 175 (350)
.......+++.|++.++|.... + .|+ .|.++++.
T Consensus 321 ---~~~~~~~~L~~L~~~gli~~~~----~---~y~f~~~~~~~~ 355 (357)
T 2fna_A 321 ---SDSEIYNYLTQLTKHSWIIKEG----E---KYCPSEPLISLA 355 (357)
T ss_dssp ---CHHHHHHHHHHHHHTTSEEESS----S---CEEESSHHHHHH
T ss_pred ---CHHHHHHHHHHHHhCCCEEecC----C---EEEecCHHHHHh
Confidence 1456778999999999997642 2 244 57787765
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.51 E-value=0.24 Score=45.59 Aligned_cols=84 Identities=13% Similarity=0.059 Sum_probs=60.4
Q ss_pred HHHhcCCceeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCcccch-hhhcCcCCCEEEccCCcCcccch-hccccc
Q 042413 241 ENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLETLEMPSSYIDQSPH-DIWMMQ 317 (350)
Q Consensus 241 ~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~~~l~~lP~-~i~~L~ 317 (350)
...|..+.+|+.+.+..+ ++.++ ..+.++.+|+.+.+..+ ++.++. .+..+.+|+.+++..+ +..++. .|..+.
T Consensus 290 ~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 290 EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI 366 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence 355667777888877654 55554 45667888888888644 777754 4577889999988765 666655 677888
Q ss_pred cCcEEEeecc
Q 042413 318 KLMHLYFYCI 327 (350)
Q Consensus 318 ~L~~L~l~~~ 327 (350)
+|+.+++..+
T Consensus 367 ~L~~i~lp~~ 376 (394)
T 4fs7_A 367 NLKKVELPKR 376 (394)
T ss_dssp TCCEEEEEGG
T ss_pred CCCEEEECCC
Confidence 8999988764
No 167
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.46 E-value=0.13 Score=47.31 Aligned_cols=99 Identities=17% Similarity=0.186 Sum_probs=68.2
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCcccch-hhhcCcCCCE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLET 298 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~~ 298 (350)
.|+++.+.... ..+....|.+++.|+.+.+. +.++.++ ..+.++.+|+.+.+..+ ++.+.. .+..+.+|+.
T Consensus 266 ~L~~i~lp~~~-----~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 266 YLASVKMPDSV-----VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER 338 (394)
T ss_dssp SCCEEECCTTC-----CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred cccEEeccccc-----ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence 66666654332 23444667778888888875 3466665 45667888888888754 666654 4577888999
Q ss_pred EEccCCcCcccch-hccccccCcEEEeecc
Q 042413 299 LEMPSSYIDQSPH-DIWMMQKLMHLYFYCI 327 (350)
Q Consensus 299 L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~ 327 (350)
+.+..+ +..++. .|.++.+|+.+++.++
T Consensus 339 i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 339 IAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp EEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred EEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 888654 666654 6778888999988765
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.17 E-value=0.5 Score=43.03 Aligned_cols=99 Identities=10% Similarity=0.122 Sum_probs=65.4
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCcccch-hhhcCcCCCE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLET 298 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~~ 298 (350)
.|+.+.+...- ..+....|.++..|+.+.+..+ ++.++ ..+.++.+|+.+.+.++.++.+++ .+..+.+|+.
T Consensus 241 ~L~~i~lp~~v-----~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~ 314 (379)
T 4h09_A 241 ALDEIAIPKNV-----TSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS 314 (379)
T ss_dssp SCCEEEECTTC-----CEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred cceEEEcCCCc-----cEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence 66666664432 2344456777777777777543 55554 345677888888888777877764 4567788888
Q ss_pred EEccCCcCcccch-hccccccCcEEEeec
Q 042413 299 LEMPSSYIDQSPH-DIWMMQKLMHLYFYC 326 (350)
Q Consensus 299 L~l~~~~l~~lP~-~i~~L~~L~~L~l~~ 326 (350)
+.+..+ ++.++. .|.+.++|+.+.+..
T Consensus 315 i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 315 VTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred EEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 888653 556654 566777788777754
No 169
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=91.74 E-value=0.47 Score=43.59 Aligned_cols=85 Identities=14% Similarity=0.217 Sum_probs=62.7
Q ss_pred HHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchh-hhcCcCCCEEEccCCcCcccch-hcccccc
Q 042413 241 ENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSL-LCTLLNLETLEMPSSYIDQSPH-DIWMMQK 318 (350)
Q Consensus 241 ~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~ 318 (350)
...|.++..|+.+.+..+...--...+.++..|+.+.+. +.++.++.. +..+.+|+.+++..+ ++.+++ .|..+.+
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred cceeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 456788888998888665433223456778899999886 457777754 467899999999764 666655 6788899
Q ss_pred CcEEEeecc
Q 042413 319 LMHLYFYCI 327 (350)
Q Consensus 319 L~~L~l~~~ 327 (350)
|+.+.+..+
T Consensus 336 L~~i~ip~s 344 (394)
T 4gt6_A 336 LERIAIPSS 344 (394)
T ss_dssp CCEEEECTT
T ss_pred CCEEEECcc
Confidence 999999654
No 170
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.48 E-value=0.54 Score=42.81 Aligned_cols=87 Identities=20% Similarity=0.088 Sum_probs=64.5
Q ss_pred chHHHhcCCceeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCcccch-hhhcCcCCCEEEccCCcCcccch-hccc
Q 042413 239 DYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLETLEMPSSYIDQSPH-DIWM 315 (350)
Q Consensus 239 ~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~~~l~~lP~-~i~~ 315 (350)
+....|.++..|+.+.+..+ ++.+. ..+.++.+|+.+.+..+ +..++. .+..+.+|+.+.+.++.+..+++ .|..
T Consensus 231 i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~ 308 (379)
T 4h09_A 231 LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD 308 (379)
T ss_dssp ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTT
T ss_pred EccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcC
Confidence 34456777788888887655 55444 34566788888888653 666665 35778999999998888888876 6778
Q ss_pred cccCcEEEeecc
Q 042413 316 MQKLMHLYFYCI 327 (350)
Q Consensus 316 L~~L~~L~l~~~ 327 (350)
..+|+.+.+..+
T Consensus 309 c~~L~~i~lp~~ 320 (379)
T 4h09_A 309 CVKLSSVTLPTA 320 (379)
T ss_dssp CTTCCEEECCTT
T ss_pred CCCCCEEEcCcc
Confidence 899999999653
No 171
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=90.87 E-value=0.5 Score=43.38 Aligned_cols=94 Identities=16% Similarity=0.168 Sum_probs=68.4
Q ss_pred CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCcccch-hhhcCcCCCE
Q 042413 221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLET 298 (350)
Q Consensus 221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~~ 298 (350)
+|+.+.+..+- ..+....|.++.+|+.+++..+ ++.++ ..+.++.+|+.+.+..+ ++.++. .+..+.+|+.
T Consensus 298 ~L~~i~l~~~i-----~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 370 (394)
T 4fs7_A 298 SLTEVKLLDSV-----KFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKK 370 (394)
T ss_dssp TCCEEEECTTC-----CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCE
T ss_pred ccccccccccc-----ceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCE
Confidence 77777775432 3455678999999999999754 77665 56788999999999776 777754 5678899999
Q ss_pred EEccCCcCcccchhccccccCcEE
Q 042413 299 LEMPSSYIDQSPHDIWMMQKLMHL 322 (350)
Q Consensus 299 L~l~~~~l~~lP~~i~~L~~L~~L 322 (350)
+++..+ +..+...+.+.++|+.+
T Consensus 371 i~lp~~-~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 371 VELPKR-LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp EEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred EEECCC-CEEhhheecCCCCCcEE
Confidence 998765 33344566666666653
No 172
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=80.98 E-value=2.1 Score=35.44 Aligned_cols=56 Identities=13% Similarity=0.166 Sum_probs=39.6
Q ss_pred ChhhHHHHHhhcCCCCCCcEEEEEeCChHHH-hhcccccCCCCCCCceEEcCCCCCChhhhhhccc
Q 042413 2 TFQQWDNLEQVLPDNQNGSRVLITVTDPELL-LSLEMENGEKIRPDSVLNGGPMIRLKHESWQFFI 66 (350)
Q Consensus 2 ~~~~w~~l~~~l~~~~~GSrIivTTR~~~v~-~~~~~~~~~~~~~~~~~~l~~L~~~~~~s~~Lf~ 66 (350)
+.+.++.+...+.....+.+||+||+..... ...... ...+++.+++ .++..+++.
T Consensus 139 ~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r-------~~~i~l~~l~--~~e~~~~l~ 195 (250)
T 1njg_A 139 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR-------CLQFHLKALD--VEQIRHQLE 195 (250)
T ss_dssp CHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-------SEEEECCCCC--HHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHH-------hhhccCCCCC--HHHHHHHHH
Confidence 3456777777776656688999999875432 111111 1689999999 999999998
No 173
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=60.99 E-value=6.4 Score=34.51 Aligned_cols=129 Identities=12% Similarity=-0.073 Sum_probs=65.9
Q ss_pred CcEEEEEeCChHHHhhcccccCCCCCCCceEEcCCCCCChhhhhhccc--ccc-----------------CCchhHHHHH
Q 042413 19 GSRVLITVTDPELLLSLEMENGEKIRPDSVLNGGPMIRLKHESWQFFI--LHY-----------------GSMPLENYFL 79 (350)
Q Consensus 19 GSrIivTTR~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~s~~Lf~--f~~-----------------~GlPLai~~l 79 (350)
+.++|.||........ . ..+..+.++++.+++ .++..+++. ... +|.|-.+..+
T Consensus 138 ~~~~i~~t~~~~~~~~---~--l~~R~~~~i~l~~~~--~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~ 210 (324)
T 1hqc_A 138 RFTLIGATTRPGLITA---P--LLSRFGIVEHLEYYT--PEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRL 210 (324)
T ss_dssp CCEEEEEESCCSSCSC---S--TTTTCSCEEECCCCC--HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHH
T ss_pred CEEEEEeCCCcccCCH---H--HHhcccEEEecCCCC--HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHH
Confidence 4567777765432110 0 011233689999999 999888887 221 6677655444
Q ss_pred HHHHH-------------HHHHhhhc-----cCCCChhhHHHHhhhhcCCCCce-----------eeHHHHHH----HHH
Q 042413 80 GEAFL-------------TVWRQIYT-----VMELPFHLKVCCIYLCVFPPSIE-----------ISTRQLYQ----LWV 126 (350)
Q Consensus 80 g~~L~-------------~~W~~~l~-----y~~L~~~lk~cfl~~a~Fp~~~~-----------i~~~~li~----~w~ 126 (350)
...+. +....++. +..++...+..+........+.. +++..+.+ +-+
T Consensus 211 l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i 290 (324)
T 1hqc_A 211 FRRVRDFAQVAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLI 290 (324)
T ss_dssp HHHHTTTSTTTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHH
Confidence 33321 11222211 45566666666665543322221 23333322 345
Q ss_pred HcCCCCCC--C---hhHHHHHHH-HHHHcCccee
Q 042413 127 AEGFIPYN--G---EETAEHYLK-ELIHRGFIKV 154 (350)
Q Consensus 127 a~g~i~~~--~---e~~~~~~~~-~Lv~r~li~~ 154 (350)
..|++... | .+.|..|++ ++.+|++||+
T Consensus 291 ~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 291 RQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 56777554 3 777888887 7788887764
No 174
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=59.25 E-value=93 Score=27.34 Aligned_cols=135 Identities=15% Similarity=0.058 Sum_probs=76.0
Q ss_pred CCCcEEEEEeCChHHHhhcccccCCCCCCC-ceEEcCCCCCChhhhhhccc--c----cc---------------C---C
Q 042413 17 QNGSRVLITVTDPELLLSLEMENGEKIRPD-SVLNGGPMIRLKHESWQFFI--L----HY---------------G---S 71 (350)
Q Consensus 17 ~~GSrIivTTR~~~v~~~~~~~~~~~~~~~-~~~~l~~L~~~~~~s~~Lf~--f----~~---------------~---G 71 (350)
..+..+|.||+.......+.... ..... ..+++.+++ .++..+++. + .. + |
T Consensus 165 ~~~~~~I~~t~~~~~~~~l~~~l--~~r~~~~~i~l~~l~--~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G 240 (387)
T 2v1u_A 165 RVWVSLVGITNSLGFVENLEPRV--KSSLGEVELVFPPYT--APQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHG 240 (387)
T ss_dssp ---CEEEEECSCSTTSSSSCHHH--HTTTTSEECCBCCCC--HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSC
T ss_pred CceEEEEEEECCCchHhhhCHHH--HhcCCCeEEeeCCCC--HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcc
Confidence 34667888887763211111000 00011 478999999 999999997 2 21 4 8
Q ss_pred ch-hHHHHHHHHHH------------HHHHhhhc----------cCCCChhhHHHHhhhhcCCCC-ceeeHHHHHHHH--
Q 042413 72 MP-LENYFLGEAFL------------TVWRQIYT----------VMELPFHLKVCCIYLCVFPPS-IEISTRQLYQLW-- 125 (350)
Q Consensus 72 lP-Lai~~lg~~L~------------~~W~~~l~----------y~~L~~~lk~cfl~~a~Fp~~-~~i~~~~li~~w-- 125 (350)
.| .|+.++..+.. +.++.+++ +..|+.+.+..++.++....+ ..+...++.+..
T Consensus 241 ~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
T 2v1u_A 241 DARRALDLLRVAGEIAERRREERVRREHVYSARAEIERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKE 320 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 88 33333333322 33333333 578999888777666633222 356666444432
Q ss_pred --HHcCCCCCCChhHHHHHHHHHHHcCcceeee
Q 042413 126 --VAEGFIPYNGEETAEHYLKELIHRGFIKVSK 156 (350)
Q Consensus 126 --~a~g~i~~~~e~~~~~~~~~Lv~r~li~~~~ 156 (350)
...| +.+.....+..+++.|...++++...
T Consensus 321 ~~~~~~-~~~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 321 LTSTLG-LEHVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHHTT-CCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhcC-CCCCCHHHHHHHHHHHHhCCCeEEEe
Confidence 2223 11113567888999999999998854
No 175
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=58.24 E-value=98 Score=27.29 Aligned_cols=89 Identities=13% Similarity=0.152 Sum_probs=52.0
Q ss_pred cCCCChhhHHHHhhhhcCC---CCceeeHHHHHHHHHH----cCCCCCCChhHHHHHHHHHHHcCcceeeec----CCCC
Q 042413 93 VMELPFHLKVCCIYLCVFP---PSIEISTRQLYQLWVA----EGFIPYNGEETAEHYLKELIHRGFIKVSKR----RARD 161 (350)
Q Consensus 93 y~~L~~~lk~cfl~~a~Fp---~~~~i~~~~li~~w~a----~g~i~~~~e~~~~~~~~~Lv~r~li~~~~~----~~~g 161 (350)
+..|+.+.|.++..++.+. .+..+...++...+.. .|.... +......++++|.+.++|..... +..|
T Consensus 283 l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g 361 (389)
T 1fnn_A 283 LIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPR-VHSQLWSYLNDLREKGIVETRQNKRGEGVRG 361 (389)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCC-CHHHHHHHHHHHHHTTSSEEEEC--------
T ss_pred HHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhCCCeEEeeeccCCCCCC
Confidence 6778888887777677654 2325666666665443 232111 24567789999999999988654 2234
Q ss_pred CeeEEE----eCHHHHHHHHHHhhh
Q 042413 162 TIKSCY----VPSFIYTSLALVAEK 182 (350)
Q Consensus 162 ~~~~~~----mhdli~dl~~~i~~~ 182 (350)
+...++ .++++..+...+..+
T Consensus 362 ~~~~~~l~~~~~~v~~~~~~~~~~~ 386 (389)
T 1fnn_A 362 RTTLISIGTEPLDTLEAVITKLIKE 386 (389)
T ss_dssp -CEEEECCSSCHHHHHHHHHHHHHH
T ss_pred ceeEEEeCCCHHHHHHHHHHHHHHH
Confidence 433343 346666665554443
No 176
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=57.78 E-value=95 Score=27.41 Aligned_cols=134 Identities=13% Similarity=-0.018 Sum_probs=73.2
Q ss_pred CCcEEEEEeCChHHHhhcccccCCCCCCCceEEcCCCCCChhhhhhccc--c----cc---------------C---Cch
Q 042413 18 NGSRVLITVTDPELLLSLEMENGEKIRPDSVLNGGPMIRLKHESWQFFI--L----HY---------------G---SMP 73 (350)
Q Consensus 18 ~GSrIivTTR~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~s~~Lf~--f----~~---------------~---GlP 73 (350)
.+.+||+||+.......+.... .......+++.+++ .++..+++. + .. + |.|
T Consensus 163 ~~~~iI~~t~~~~~~~~l~~~l--~sr~~~~i~l~~l~--~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~ 238 (384)
T 2qby_B 163 ANISVIMISNDINVRDYMEPRV--LSSLGPSVIFKPYD--AEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDA 238 (384)
T ss_dssp SCEEEEEECSSTTTTTTSCHHH--HHTCCCEEEECCCC--HHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCH
T ss_pred cceEEEEEECCCchHhhhCHHH--HhcCCCeEEECCCC--HHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCH
Confidence 6788999998763221111100 00012589999999 999999998 2 21 3 655
Q ss_pred h-HHHHHHHHHH----------HHHHhhhc----------cCCCChhhHHHHhhhhcCCCCceeeHHHHHHHHHHcCCCC
Q 042413 74 L-ENYFLGEAFL----------TVWRQIYT----------VMELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIP 132 (350)
Q Consensus 74 L-ai~~lg~~L~----------~~W~~~l~----------y~~L~~~lk~cfl~~a~Fp~~~~i~~~~li~~w~a~g~i~ 132 (350)
. |+..+-.+.. +.++.+++ ++.|+.+.|..+.-++....+-.+. +.....-...| +.
T Consensus 239 r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~ 316 (384)
T 2qby_B 239 RKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK 316 (384)
T ss_dssp HHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC
T ss_pred HHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhcchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC
Confidence 5 4444433321 33443333 5788887777666566511101110 11111111223 11
Q ss_pred CCChhHHHHHHHHHHHcCcceeeec
Q 042413 133 YNGEETAEHYLKELIHRGFIKVSKR 157 (350)
Q Consensus 133 ~~~e~~~~~~~~~Lv~r~li~~~~~ 157 (350)
.........++..|...++++....
T Consensus 317 ~~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 317 PLSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEec
Confidence 1125667789999999999987654
No 177
>2gkw_B Tumor necrosis factor receptor superfamily member; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens}
Probab=45.16 E-value=13 Score=18.93 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=14.1
Q ss_pred hcCCCCCCcEEEEEeCCh
Q 042413 12 VLPDNQNGSRVLITVTDP 29 (350)
Q Consensus 12 ~l~~~~~GSrIivTTR~~ 29 (350)
++|.-..|+.|+|||...
T Consensus 3 PlPa~eeGaT~lVtTKT~ 20 (26)
T 2gkw_B 3 PVPATELGSTELVTTKTA 20 (26)
T ss_pred cccccccCceEEEEeccC
Confidence 466667899999999753
No 178
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=36.63 E-value=41 Score=26.78 Aligned_cols=54 Identities=9% Similarity=0.123 Sum_probs=36.0
Q ss_pred hhHHHHHhhcCCCCCCcEEEEEeCChHHH-hhcccccCCCCCCCceEEcCCCCCChhhhhhccc
Q 042413 4 QQWDNLEQVLPDNQNGSRVLITVTDPELL-LSLEMENGEKIRPDSVLNGGPMIRLKHESWQFFI 66 (350)
Q Consensus 4 ~~w~~l~~~l~~~~~GSrIivTTR~~~v~-~~~~~~~~~~~~~~~~~~l~~L~~~~~~s~~Lf~ 66 (350)
+.++.+...+.....+.++|+||+..... ....... ..+++.+++ .++..+++.
T Consensus 117 ~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~-------~~i~~~~~~--~~~~~~~l~ 171 (226)
T 2chg_A 117 DAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC-------AVFRFKPVP--KEAMKKRLL 171 (226)
T ss_dssp HHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS-------EEEECCCCC--HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC-------ceeecCCCC--HHHHHHHHH
Confidence 34455655555555678999999876422 1111111 578999999 999999988
No 179
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=27.84 E-value=3e+02 Score=23.84 Aligned_cols=134 Identities=13% Similarity=0.095 Sum_probs=72.4
Q ss_pred CCcEEEEEeCChHHHhhcccccCCCCCC-CceEEcCCCCCChhhhhhccc--cc----c---------------C---Cc
Q 042413 18 NGSRVLITVTDPELLLSLEMENGEKIRP-DSVLNGGPMIRLKHESWQFFI--LH----Y---------------G---SM 72 (350)
Q Consensus 18 ~GSrIivTTR~~~v~~~~~~~~~~~~~~-~~~~~l~~L~~~~~~s~~Lf~--f~----~---------------~---Gl 72 (350)
.+..+|+||++......+.... .... ...+++++++ .++..+++. +. . + |.
T Consensus 162 ~~~~~I~~~~~~~~~~~~~~~~--~~r~~~~~i~l~~l~--~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~ 237 (386)
T 2qby_A 162 SKISFIGITNDVKFVDLLDPRV--KSSLSEEEIIFPPYN--AEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGD 237 (386)
T ss_dssp --EEEEEEESCGGGGGGCTTHH--HHTTTTEEEEECCCC--HHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCC
T ss_pred CeEEEEEEECCCChHhhhCHHH--hccCCCeeEEeCCCC--HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 4567888888775433321100 0001 1479999999 999999987 21 1 4 87
Q ss_pred hhHH-HHHHHHHH------------HHHHhhhc----------cCCCChhhHHHHhhhhcCCC-C-ceeeHHHHHHHH--
Q 042413 73 PLEN-YFLGEAFL------------TVWRQIYT----------VMELPFHLKVCCIYLCVFPP-S-IEISTRQLYQLW-- 125 (350)
Q Consensus 73 PLai-~~lg~~L~------------~~W~~~l~----------y~~L~~~lk~cfl~~a~Fp~-~-~~i~~~~li~~w-- 125 (350)
|..+ ..+..+.. +..+.+++ +..+|.+.+..+..++...+ + ..+...++.+..
T Consensus 238 ~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~ 317 (386)
T 2qby_A 238 ARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLN 317 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHH
Confidence 7743 33332222 12222221 56888887777766664332 2 234454443322
Q ss_pred --HHcCCCCCCChhHHHHHHHHHHHcCcceeee
Q 042413 126 --VAEGFIPYNGEETAEHYLKELIHRGFIKVSK 156 (350)
Q Consensus 126 --~a~g~i~~~~e~~~~~~~~~Lv~r~li~~~~ 156 (350)
-..|. ..........+++.|...++++...
T Consensus 318 ~~~~~g~-~~~~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 318 ICKKLGV-EAVTQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp HHHHHTC-CCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHhcCC-CCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 11231 1112356678999999999998753
No 180
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=20.66 E-value=37 Score=17.42 Aligned_cols=14 Identities=14% Similarity=0.226 Sum_probs=11.1
Q ss_pred CCchhHHHHHHHHH
Q 042413 70 GSMPLENYFLGEAF 83 (350)
Q Consensus 70 ~GlPLai~~lg~~L 83 (350)
.-+|||+.+.++.+
T Consensus 9 rklplavav~agv~ 22 (28)
T 2vda_B 9 RKLPLAVAVAAGVM 22 (28)
T ss_dssp CCCTHHHHHHHHTT
T ss_pred ccCchHHHHHHHHh
Confidence 46899999988754
Done!