Query 042415
Match_columns 151
No_of_seqs 181 out of 1524
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 05:58:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042415.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042415hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1515 Arylacetamide deacetyl 100.0 2.2E-29 4.7E-34 199.8 12.6 130 12-150 30-170 (336)
2 COG2272 PnbA Carboxylesterase 99.9 1.3E-21 2.9E-26 159.6 11.3 133 6-150 3-184 (491)
3 COG0657 Aes Esterase/lipase [L 99.8 2.8E-21 6.1E-26 152.1 8.8 81 58-150 76-156 (312)
4 PF07859 Abhydrolase_3: alpha/ 99.8 1.5E-20 3.3E-25 139.5 5.5 75 64-150 1-75 (211)
5 PRK10162 acetyl esterase; Prov 99.8 3.2E-19 6.8E-24 141.3 10.8 95 43-150 56-158 (318)
6 PF00135 COesterase: Carboxyle 99.8 1.5E-19 3.2E-24 150.3 4.5 96 43-150 104-212 (535)
7 cd00312 Esterase_lipase Estera 99.7 3.1E-17 6.8E-22 136.3 10.7 93 44-150 75-180 (493)
8 KOG4389 Acetylcholinesterase/B 99.7 1.4E-16 3E-21 130.0 6.1 98 41-150 114-222 (601)
9 KOG1516 Carboxylesterase and r 99.5 1.3E-14 2.9E-19 122.0 6.6 97 43-150 92-199 (545)
10 KOG4388 Hormone-sensitive lipa 99.4 5E-13 1.1E-17 111.3 6.7 72 59-134 394-465 (880)
11 PF10340 DUF2424: Protein of u 98.9 5.9E-09 1.3E-13 84.1 7.8 67 59-127 120-191 (374)
12 KOG4627 Kynurenine formamidase 98.4 4.7E-07 1E-11 67.6 5.7 68 59-129 65-133 (270)
13 PLN00021 chlorophyllase 98.3 6.6E-06 1.4E-10 65.4 10.3 84 55-150 46-130 (313)
14 COG1506 DAP2 Dipeptidyl aminop 98.3 6.7E-06 1.5E-10 70.9 10.9 75 59-150 392-477 (620)
15 TIGR01840 esterase_phb esteras 98.0 1.3E-05 2.8E-10 59.8 6.0 80 55-150 6-99 (212)
16 PRK10115 protease 2; Provision 98.0 0.00017 3.7E-09 63.0 12.5 92 42-150 414-528 (686)
17 PRK10566 esterase; Provisional 97.9 0.00021 4.6E-09 53.9 11.0 63 59-127 25-101 (249)
18 PF12740 Chlorophyllase2: Chlo 97.9 9.5E-05 2.1E-09 57.2 8.2 84 55-150 11-95 (259)
19 TIGR03101 hydr2_PEP hydrolase, 97.4 0.0017 3.7E-08 50.5 9.4 71 55-127 19-96 (266)
20 PF10503 Esterase_phd: Esteras 97.4 0.00035 7.6E-09 53.0 5.2 41 59-102 14-54 (220)
21 PF12695 Abhydrolase_5: Alpha/ 97.2 0.0028 6.1E-08 43.4 8.2 54 63-125 1-54 (145)
22 PF07224 Chlorophyllase: Chlor 97.0 0.0025 5.5E-08 49.5 6.6 68 55-129 40-108 (307)
23 PF00326 Peptidase_S9: Prolyl 97.0 0.0014 3.1E-08 48.4 4.9 52 85-150 6-68 (213)
24 PLN02298 hydrolase, alpha/beta 97.0 0.0067 1.5E-07 47.8 8.8 64 59-127 57-128 (330)
25 COG0412 Dienelactone hydrolase 96.9 0.015 3.1E-07 44.5 10.0 68 55-128 21-107 (236)
26 TIGR03100 hydr1_PEP hydrolase, 96.9 0.007 1.5E-07 46.9 8.3 69 55-127 21-95 (274)
27 PLN02385 hydrolase; alpha/beta 96.8 0.019 4.1E-07 45.8 10.6 68 55-127 81-156 (349)
28 PRK05077 frsA fermentation/res 96.8 0.016 3.6E-07 47.7 10.4 68 55-127 188-259 (414)
29 COG3509 LpqC Poly(3-hydroxybut 96.8 0.0029 6.3E-08 49.8 5.3 83 55-150 54-148 (312)
30 TIGR02821 fghA_ester_D S-formy 96.6 0.019 4E-07 44.5 8.9 42 59-103 40-81 (275)
31 PRK10985 putative hydrolase; P 96.6 0.013 2.9E-07 46.4 8.2 65 59-127 56-127 (324)
32 PF03403 PAF-AH_p_II: Platelet 96.6 0.0034 7.4E-08 51.3 4.8 40 59-104 98-137 (379)
33 COG2945 Predicted hydrolase of 96.5 0.028 6.2E-07 41.8 8.6 74 55-129 22-100 (210)
34 PF05448 AXE1: Acetyl xylan es 96.5 0.0043 9.4E-08 49.5 4.6 91 40-150 52-179 (320)
35 cd00707 Pancreat_lipase_like P 96.5 0.019 4.2E-07 44.7 8.1 66 59-127 34-106 (275)
36 PRK13604 luxD acyl transferase 96.2 0.05 1.1E-06 43.3 8.8 63 59-127 35-105 (307)
37 KOG2281 Dipeptidyl aminopeptid 96.1 0.011 2.5E-07 51.0 5.2 93 45-150 623-731 (867)
38 TIGR00976 /NonD putative hydro 96.0 0.02 4.2E-07 48.9 6.5 71 55-127 16-92 (550)
39 KOG1552 Predicted alpha/beta h 95.7 0.05 1.1E-06 42.1 6.9 64 60-128 59-126 (258)
40 PF01738 DLH: Dienelactone hyd 95.5 0.067 1.4E-06 39.7 7.0 68 55-128 8-93 (218)
41 PLN02652 hydrolase; alpha/beta 95.4 0.09 2E-06 43.2 7.8 67 55-127 130-204 (395)
42 PLN02511 hydrolase 95.2 0.11 2.3E-06 42.4 7.7 65 59-127 98-169 (388)
43 PHA02857 monoglyceride lipase; 95.1 0.12 2.6E-06 39.4 7.3 62 59-126 23-92 (276)
44 TIGR03695 menH_SHCHC 2-succiny 95.0 0.13 2.9E-06 37.2 7.0 37 62-105 2-38 (251)
45 KOG3847 Phospholipase A2 (plat 95.0 0.046 9.9E-07 43.7 4.6 40 59-104 116-155 (399)
46 PRK10673 acyl-CoA esterase; Pr 94.8 0.11 2.5E-06 38.7 6.4 63 55-124 10-78 (255)
47 KOG2100 Dipeptidyl aminopeptid 94.7 0.096 2.1E-06 46.6 6.5 78 59-150 524-612 (755)
48 PF12146 Hydrolase_4: Putative 94.6 0.066 1.4E-06 33.9 4.0 43 55-104 11-53 (79)
49 PRK11460 putative hydrolase; P 94.1 0.29 6.4E-06 37.0 7.3 38 59-101 14-52 (232)
50 PF03991 Prion_octapep: Copper 94.0 0.021 4.5E-07 20.5 0.3 6 68-73 2-7 (8)
51 PF12697 Abhydrolase_6: Alpha/ 93.6 0.48 1E-05 33.7 7.4 58 64-128 1-63 (228)
52 KOG4391 Predicted alpha/beta h 93.6 0.33 7.1E-06 37.2 6.4 66 59-129 76-145 (300)
53 PF00151 Lipase: Lipase; Inte 93.5 0.13 2.9E-06 41.3 4.6 58 59-118 69-128 (331)
54 TIGR01250 pro_imino_pep_2 prol 93.4 0.53 1.1E-05 35.0 7.6 40 60-104 24-63 (288)
55 PF07082 DUF1350: Protein of u 92.8 0.44 9.6E-06 36.8 6.3 45 62-108 17-61 (250)
56 PLN02211 methyl indole-3-aceta 92.6 0.85 1.8E-05 35.2 7.8 39 60-104 17-55 (273)
57 TIGR03611 RutD pyrimidine util 92.5 0.55 1.2E-05 34.4 6.5 39 59-104 11-49 (257)
58 PF02129 Peptidase_S15: X-Pro 92.5 0.35 7.7E-06 37.2 5.5 71 56-127 15-96 (272)
59 COG1647 Esterase/lipase [Gener 92.4 0.68 1.5E-05 35.4 6.7 86 59-150 13-113 (243)
60 TIGR03230 lipo_lipase lipoprot 92.4 1.2 2.7E-05 37.2 8.9 67 59-127 39-113 (442)
61 TIGR02427 protocat_pcaD 3-oxoa 92.3 0.48 1E-05 34.4 5.8 38 60-104 12-49 (251)
62 PRK00870 haloalkane dehalogena 92.2 0.7 1.5E-05 35.8 7.0 38 61-104 46-83 (302)
63 PLN02442 S-formylglutathione h 91.8 0.24 5.2E-06 38.6 4.0 42 59-103 45-86 (283)
64 TIGR03056 bchO_mg_che_rel puta 91.6 0.93 2E-05 34.0 6.9 61 60-127 27-91 (278)
65 PRK03204 haloalkane dehalogena 91.5 0.95 2.1E-05 35.0 6.9 61 61-128 34-98 (286)
66 PRK14875 acetoin dehydrogenase 91.4 0.73 1.6E-05 36.5 6.4 62 59-127 129-193 (371)
67 PRK11126 2-succinyl-6-hydroxy- 90.9 0.91 2E-05 33.5 6.2 36 61-104 2-37 (242)
68 PRK10749 lysophospholipase L2; 90.5 2.2 4.7E-05 33.8 8.2 38 60-103 53-90 (330)
69 PLN02894 hydrolase, alpha/beta 89.2 1 2.3E-05 36.9 5.7 39 60-105 104-142 (402)
70 COG0429 Predicted hydrolase of 89.0 2 4.3E-05 34.7 6.8 65 59-127 73-144 (345)
71 KOG2564 Predicted acetyltransf 88.9 0.83 1.8E-05 36.2 4.5 62 59-125 72-141 (343)
72 PLN02872 triacylglycerol lipas 88.5 0.97 2.1E-05 37.2 5.0 68 59-127 72-157 (395)
73 PLN02965 Probable pheophorbida 88.2 4 8.6E-05 30.7 8.0 38 62-105 4-41 (255)
74 COG4099 Predicted peptidase [G 88.2 0.82 1.8E-05 36.6 4.1 18 55-72 181-202 (387)
75 TIGR03343 biphenyl_bphD 2-hydr 87.2 0.9 2E-05 34.4 3.9 42 61-105 30-71 (282)
76 TIGR01836 PHA_synth_III_C poly 87.2 2.3 4.9E-05 33.9 6.3 62 63-128 64-133 (350)
77 TIGR01738 bioH putative pimelo 87.1 1 2.2E-05 32.6 3.9 37 61-104 4-40 (245)
78 COG3458 Acetyl esterase (deace 86.5 1.9 4.2E-05 34.0 5.2 58 39-103 51-118 (321)
79 PLN02824 hydrolase, alpha/beta 86.4 5.8 0.00013 30.4 8.1 37 61-104 29-65 (294)
80 PF02230 Abhydrolase_2: Phosph 86.0 3.9 8.4E-05 30.2 6.6 13 59-71 12-24 (216)
81 KOG1455 Lysophospholipase [Lip 85.8 13 0.00027 29.8 9.5 70 55-129 47-125 (313)
82 PF12715 Abhydrolase_7: Abhydr 85.2 3.1 6.7E-05 34.3 6.1 48 55-103 108-169 (390)
83 KOG1838 Alpha/beta hydrolase [ 84.3 5.3 0.00011 33.2 7.1 67 59-129 123-196 (409)
84 PRK10349 carboxylesterase BioH 84.3 1.9 4.2E-05 32.3 4.4 37 61-104 13-49 (256)
85 COG2936 Predicted acyl esteras 84.1 2.2 4.8E-05 36.8 5.0 73 55-128 39-120 (563)
86 PRK03592 haloalkane dehalogena 83.8 4.1 9E-05 31.2 6.2 37 60-103 26-62 (295)
87 PRK05855 short chain dehydroge 83.3 3.3 7.2E-05 34.8 5.8 58 60-124 24-90 (582)
88 TIGR02240 PHA_depoly_arom poly 83.0 3.7 8E-05 31.2 5.5 57 61-124 25-88 (276)
89 PF05577 Peptidase_S28: Serine 82.6 1.8 4E-05 35.7 3.9 66 60-128 28-107 (434)
90 TIGR03502 lipase_Pla1_cef extr 81.0 2.6 5.6E-05 37.9 4.4 39 60-104 448-486 (792)
91 PRK10439 enterobactin/ferric e 78.6 21 0.00045 29.6 8.8 40 59-102 207-249 (411)
92 PLN03084 alpha/beta hydrolase 78.4 11 0.00025 30.8 7.2 38 60-104 126-163 (383)
93 KOG2382 Predicted alpha/beta h 78.0 6.5 0.00014 31.5 5.4 67 55-126 46-118 (315)
94 PLN02679 hydrolase, alpha/beta 77.5 4.2 9.1E-05 32.7 4.4 36 61-103 88-123 (360)
95 COG0400 Predicted esterase [Ge 77.1 7.9 0.00017 29.1 5.5 75 59-150 16-103 (207)
96 COG2267 PldB Lysophospholipase 77.0 10 0.00022 29.9 6.3 62 62-129 35-101 (298)
97 COG4188 Predicted dienelactone 75.5 17 0.00038 29.7 7.3 80 59-150 69-163 (365)
98 PRK06489 hypothetical protein; 72.8 5.1 0.00011 32.0 3.8 40 61-104 69-115 (360)
99 PF00975 Thioesterase: Thioest 71.5 8.6 0.00019 28.2 4.5 54 62-121 1-55 (229)
100 PF02879 PGM_PMM_II: Phosphogl 71.2 25 0.00054 22.7 6.7 75 59-150 20-99 (104)
101 PRK11071 esterase YqiA; Provis 69.6 19 0.00041 26.2 5.9 37 62-103 2-41 (190)
102 PF11144 DUF2920: Protein of u 68.9 9.7 0.00021 31.6 4.5 43 60-104 33-75 (403)
103 PF10142 PhoPQ_related: PhoPQ- 67.9 37 0.0008 27.9 7.7 45 55-101 57-105 (367)
104 TIGR01249 pro_imino_pep_1 prol 67.4 22 0.00047 27.6 6.2 59 62-127 28-91 (306)
105 PLN03087 BODYGUARD 1 domain co 66.6 12 0.00026 31.7 4.8 45 55-104 195-242 (481)
106 PF06500 DUF1100: Alpha/beta h 66.0 13 0.00027 31.0 4.7 77 55-150 184-265 (411)
107 PLN02578 hydrolase 65.0 26 0.00056 28.0 6.3 36 62-104 87-122 (354)
108 COG3571 Predicted hydrolase of 63.7 17 0.00037 26.7 4.4 38 62-103 15-52 (213)
109 KOG3967 Uncharacterized conser 62.4 14 0.00031 28.3 4.0 42 59-101 99-151 (297)
110 KOG4178 Soluble epoxide hydrol 60.5 71 0.0015 25.8 7.8 59 41-105 21-82 (322)
111 PF07819 PGAP1: PGAP1-like pro 60.3 33 0.00073 25.8 5.8 63 61-128 4-77 (225)
112 PF05677 DUF818: Chlamydia CHL 60.2 55 0.0012 26.8 7.2 70 59-128 135-209 (365)
113 COG4757 Predicted alpha/beta h 57.5 29 0.00062 27.0 4.9 47 82-129 46-103 (281)
114 PF10686 DUF2493: Protein of u 57.4 20 0.00044 22.0 3.5 33 59-98 29-61 (71)
115 KOG2872 Uroporphyrinogen decar 52.1 21 0.00046 28.5 3.6 35 59-106 250-284 (359)
116 PF00756 Esterase: Putative es 52.0 10 0.00022 28.3 1.8 40 59-102 22-65 (251)
117 KOG4127 Renal dipeptidase [Pos 52.0 76 0.0016 26.2 6.7 69 59-129 265-333 (419)
118 PF03583 LIP: Secretory lipase 51.8 35 0.00077 26.7 4.9 40 84-125 17-59 (290)
119 PF01674 Lipase_2: Lipase (cla 50.7 44 0.00095 25.3 5.0 41 64-109 4-47 (219)
120 TIGR01838 PHA_synth_I poly(R)- 50.5 1.2E+02 0.0025 26.3 8.1 70 55-127 181-258 (532)
121 PLN02980 2-oxoglutarate decarb 49.9 63 0.0014 31.9 7.0 38 60-104 1370-1407(1655)
122 TIGR01607 PST-A Plasmodium sub 48.7 30 0.00065 27.5 4.1 66 60-126 20-117 (332)
123 PHA01735 hypothetical protein 48.4 17 0.00036 22.5 2.0 17 111-127 29-45 (76)
124 PRK07868 acyl-CoA synthetase; 47.1 64 0.0014 29.8 6.4 43 60-105 66-110 (994)
125 KOG4667 Predicted esterase [Li 46.4 1.2E+02 0.0026 23.5 6.7 64 59-126 31-101 (269)
126 KOG3101 Esterase D [General fu 44.3 45 0.00097 25.7 4.1 42 59-103 42-83 (283)
127 PF11288 DUF3089: Protein of u 44.2 45 0.00097 25.1 4.2 35 95-129 46-92 (207)
128 KOG2624 Triglyceride lipase-ch 43.6 63 0.0014 26.9 5.3 68 55-127 67-157 (403)
129 PRK07581 hypothetical protein; 43.2 48 0.001 26.0 4.5 40 60-105 40-82 (339)
130 KOG1454 Predicted hydrolase/ac 43.1 20 0.00043 28.7 2.3 39 59-102 56-94 (326)
131 TIGR00632 vsr DNA mismatch end 42.8 45 0.00097 22.8 3.6 15 59-73 54-68 (117)
132 PRK08775 homoserine O-acetyltr 40.8 47 0.001 26.2 4.1 10 94-103 99-108 (343)
133 PRK05371 x-prolyl-dipeptidyl a 40.0 71 0.0015 28.8 5.4 43 85-128 271-319 (767)
134 PF06342 DUF1057: Alpha/beta h 39.5 75 0.0016 25.3 4.9 41 59-105 33-73 (297)
135 cd03015 PRX_Typ2cys Peroxiredo 35.4 56 0.0012 23.1 3.5 43 59-102 28-71 (173)
136 cd03084 phosphohexomutase The 35.0 2E+02 0.0044 22.9 7.0 76 59-150 111-190 (355)
137 KOG2182 Hydrolytic enzymes of 32.6 3.3E+02 0.0071 23.5 7.8 81 59-143 84-179 (514)
138 PLN02371 phosphoglucosamine mu 32.6 78 0.0017 27.5 4.4 75 59-150 262-342 (583)
139 cd00218 GlcAT-I Beta1,3-glucur 32.3 1.3E+02 0.0028 23.0 5.0 45 84-128 45-91 (223)
140 PF03959 FSH1: Serine hydrolas 31.9 19 0.0004 26.7 0.4 12 60-71 3-14 (212)
141 COG3150 Predicted esterase [Ge 31.7 1.1E+02 0.0023 22.7 4.3 55 64-125 2-57 (191)
142 TIGR01392 homoserO_Ac_trn homo 30.9 64 0.0014 25.6 3.4 12 93-104 71-82 (351)
143 PRK00175 metX homoserine O-ace 29.3 1.3E+02 0.0028 24.3 4.9 44 60-104 47-101 (379)
144 PF10021 DUF2263: Uncharacteri 29.2 40 0.00086 23.8 1.7 20 60-79 76-100 (148)
145 cd04251 AAK_NAGK-UC AAK_NAGK-U 28.9 1.8E+02 0.0039 22.3 5.5 49 64-128 27-81 (257)
146 PRK15000 peroxidase; Provision 28.8 80 0.0017 23.3 3.4 43 59-102 33-76 (200)
147 PRK10964 ADP-heptose:LPS hepto 28.2 1.1E+02 0.0025 23.8 4.4 37 60-99 177-215 (322)
148 TIGR02964 xanthine_xdhC xanthi 28.2 1.4E+02 0.0031 22.8 4.8 31 64-103 102-132 (246)
149 cd03078 GST_N_Metaxin1_like GS 27.9 1.5E+02 0.0032 18.0 4.4 62 64-127 2-72 (73)
150 PF10959 DUF2761: Protein of u 27.5 20 0.00043 22.8 -0.1 21 123-145 34-55 (95)
151 PF05990 DUF900: Alpha/beta hy 27.1 45 0.00098 25.2 1.8 41 59-104 16-58 (233)
152 TIGR02193 heptsyl_trn_I lipopo 26.8 1.2E+02 0.0027 23.5 4.3 40 60-100 178-217 (319)
153 PF05728 UPF0227: Uncharacteri 26.2 89 0.0019 22.9 3.2 11 64-76 2-12 (187)
154 KOG2237 Predicted serine prote 25.8 81 0.0017 28.1 3.3 65 59-127 468-543 (712)
155 PF04317 DUF463: YcjX-like fam 25.6 1.5E+02 0.0033 25.1 4.7 53 85-141 248-300 (443)
156 PRK09437 bcp thioredoxin-depen 25.5 1E+02 0.0022 21.1 3.3 43 59-102 29-72 (154)
157 COG1505 Serine proteases of th 25.4 3.3E+02 0.0073 24.2 6.8 65 59-127 419-494 (648)
158 cd04252 AAK_NAGK-fArgBP AAK_NA 25.0 2.6E+02 0.0055 21.3 5.7 47 65-127 32-79 (248)
159 TIGR02806 clostrip clostripain 25.0 44 0.00096 28.3 1.5 16 59-74 113-128 (476)
160 cd05805 MPG1_transferase GTP-m 24.6 2.3E+02 0.005 23.4 5.8 60 85-150 183-244 (441)
161 cd00423 Pterin_binding Pterin 24.2 2.2E+02 0.0048 21.8 5.2 43 87-129 113-160 (258)
162 COG4286 Uncharacterized conser 24.0 45 0.00098 26.4 1.3 20 59-78 274-293 (306)
163 PF08373 RAP: RAP domain; Int 23.2 1.4E+02 0.0029 16.9 3.1 19 85-103 22-40 (58)
164 PF14041 Lipoprotein_21: LppP/ 23.2 52 0.0011 21.0 1.3 41 60-104 24-64 (89)
165 PF07449 HyaE: Hydrogenase-1 e 23.0 64 0.0014 21.6 1.7 16 59-74 81-96 (107)
166 cd02952 TRP14_like Human TRX-r 22.9 1.6E+02 0.0035 19.9 3.8 44 59-105 20-71 (119)
167 PRK06852 aldolase; Validated 22.5 3.5E+02 0.0077 21.6 6.1 46 59-104 166-211 (304)
168 PTZ00445 p36-lilke protein; Pr 22.5 70 0.0015 24.3 2.0 40 63-104 53-101 (219)
169 cd03010 TlpA_like_DsbE TlpA-li 22.4 1.3E+02 0.0028 19.7 3.2 41 59-103 24-64 (127)
170 PF04083 Abhydro_lipase: Parti 22.4 62 0.0013 19.4 1.5 11 59-69 41-51 (63)
171 PF08538 DUF1749: Protein of u 22.2 3.8E+02 0.0082 21.5 6.2 65 60-127 32-100 (303)
172 PLN02200 adenylate kinase fami 21.8 2.1E+02 0.0046 21.6 4.7 36 59-101 40-75 (234)
173 PF10516 SHNi-TPR: SHNi-TPR; 21.5 1.1E+02 0.0023 16.4 2.2 21 108-128 15-35 (38)
174 PF01112 Asparaginase_2: Aspar 21.4 36 0.00079 27.3 0.4 55 64-128 4-62 (319)
175 TIGR02740 TraF-like TraF-like 21.4 2.2E+02 0.0048 22.1 4.8 51 59-113 165-215 (271)
176 COG0596 MhpC Predicted hydrola 20.9 1.8E+02 0.004 20.1 4.0 42 61-108 21-63 (282)
177 PRK14320 glmM phosphoglucosami 20.9 2.6E+02 0.0055 23.3 5.3 58 84-150 186-247 (443)
178 PF06309 Torsin: Torsin; Inte 20.7 3E+02 0.0065 19.0 5.1 13 59-71 50-62 (127)
179 COG1225 Bcp Peroxiredoxin [Pos 20.5 1.7E+02 0.0037 21.0 3.6 42 59-101 29-71 (157)
180 PTZ00472 serine carboxypeptida 20.3 64 0.0014 27.2 1.6 12 59-70 75-86 (462)
181 KOG3043 Predicted hydrolase re 20.1 2.5E+02 0.0054 21.7 4.6 45 83-128 57-117 (242)
182 PRK14058 acetylglutamate/acety 20.0 2.9E+02 0.0064 21.2 5.2 47 64-126 31-83 (268)
No 1
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=99.96 E-value=2.2e-29 Score=199.82 Aligned_cols=130 Identities=46% Similarity=0.757 Sum_probs=118.8
Q ss_pred cceEEEecCCceeeeccC-CcCCCCCCCCCceeeeeEEeCCCCC-------CCCC---CCceEEEEEeCCccccCCCCCc
Q 042415 12 FFHIFVHTDGHGEGFFGT-EKVSASMDSPNVVFSKDVVIVPEKD-------PPLK---QTKSSLFYYHGGGLFMGSPFCS 80 (151)
Q Consensus 12 ~~~~~~~~~g~~~r~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~-------P~~~---~~~Pvvv~iHGGg~~~g~~~~~ 80 (151)
.+.++.+.+|+++|.+.. +..++..++..++...|+++..... |... ++.|+|||||||||+.|+....
T Consensus 30 ~~~i~i~~~~~~~r~~~~~~~~p~~~~p~~~v~~~dv~~~~~~~l~vRly~P~~~~~~~~~p~lvyfHGGGf~~~S~~~~ 109 (336)
T KOG1515|consen 30 FENIRIFKDGSFERFFGRFDKVPPSSDPVNGVTSKDVTIDPFTNLPVRLYRPTSSSSETKLPVLVYFHGGGFCLGSANSP 109 (336)
T ss_pred hhhceeecCCceeeeecccccCCCCCCcccCceeeeeEecCCCCeEEEEEcCCCCCcccCceEEEEEeCCccEeCCCCCc
Confidence 467899999999999986 8888888888899999999888775 5544 5899999999999999998888
Q ss_pred chHHHHHHHHhcCCcEEEEEcCCCCCCCCCchHHHHHHHHHHHHHhhhcccCCCCCccccCCCCCCceee
Q 042415 81 TYHNYIGSLSAKANVIVVSIDYRLAPEHLVAAAYEDSWAALKWVASHFKISAHGYETWLNTRANFTCVFT 150 (151)
Q Consensus 81 ~~~~~~~~la~~~g~~vv~v~YRlap~~~~p~~l~D~~~al~wl~~~~~~~~~ggd~~~~~~~D~~rv~l 150 (151)
.|+.+|+++|.+++++||+|||||+|||+||++++|+++|+.|+.+|. |+.+++|++||||
T Consensus 110 ~y~~~~~~~a~~~~~vvvSVdYRLAPEh~~Pa~y~D~~~Al~w~~~~~---------~~~~~~D~~rv~l 170 (336)
T KOG1515|consen 110 AYDSFCTRLAAELNCVVVSVDYRLAPEHPFPAAYDDGWAALKWVLKNS---------WLKLGADPSRVFL 170 (336)
T ss_pred hhHHHHHHHHHHcCeEEEecCcccCCCCCCCccchHHHHHHHHHHHhH---------HHHhCCCcccEEE
Confidence 899999999999999999999999999999999999999999999984 6789999999998
No 2
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=99.87 E-value=1.3e-21 Score=159.61 Aligned_cols=133 Identities=23% Similarity=0.298 Sum_probs=101.8
Q ss_pred ceeEeecceEEEecCCceeeeccCCcCCCC----------------------------CCC-------CCceeeeeEEeC
Q 042415 6 EHLHMSFFHIFVHTDGHGEGFFGTEKVSAS----------------------------MDS-------PNVVFSKDVVIV 50 (151)
Q Consensus 6 ~~~~~~~~~~~~~~~g~~~r~~~~~~~~~~----------------------------~~~-------~~~~~~~d~~~~ 50 (151)
+.+.+..+.+..+....+.+++++++..++ ..+ .....++||.+-
T Consensus 3 ~~~~t~~G~~~g~~~~~v~~w~GIpYA~pPvG~~Rfr~p~~~~~w~~~rda~~~gp~~~Q~~~~~~~~~~~~~sEDCL~L 82 (491)
T COG2272 3 PVAETTTGKVEGITVNGVHSWLGIPYAAPPVGELRFRRPVPPEPWSGVRDATQFGPACPQPFNRMGSGEDFTGSEDCLYL 82 (491)
T ss_pred ceeecccceeecccccceeEEeecccCCCCCCcccccCCCCCcCCCcccchhccCCCCCCccccccccccCCccccceeE
Confidence 345556677888888888888877665532 000 012456888888
Q ss_pred CCCCCC-CCCCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCCC-------------CchHHHH
Q 042415 51 PEKDPP-LKQTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEHL-------------VAAAYED 116 (151)
Q Consensus 51 ~~~~P~-~~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~~-------------~p~~l~D 116 (151)
++..|. ..++.|||||||||||..|+...+.|+. ..||++.+++||++||||++..- -+-++.|
T Consensus 83 NIwaP~~~a~~~PVmV~IHGG~y~~Gs~s~~~ydg--s~La~~g~vVvVSvNYRLG~lGfL~~~~~~~~~~~~~n~Gl~D 160 (491)
T COG2272 83 NIWAPEVPAEKLPVMVYIHGGGYIMGSGSEPLYDG--SALAARGDVVVVSVNYRLGALGFLDLSSLDTEDAFASNLGLLD 160 (491)
T ss_pred EeeccCCCCCCCcEEEEEeccccccCCCcccccCh--HHHHhcCCEEEEEeCcccccceeeehhhccccccccccccHHH
Confidence 888888 5588999999999999999998777776 78999866999999999995331 1359999
Q ss_pred HHHHHHHHHhhhcccCCCCCccccCCCCCCceee
Q 042415 117 SWAALKWVASHFKISAHGYETWLNTRANFTCVFT 150 (151)
Q Consensus 117 ~~~al~wl~~~~~~~~~ggd~~~~~~~D~~rv~l 150 (151)
+..||+|+++||+ + +++||++|+|
T Consensus 161 qilALkWV~~NIe--~--------FGGDp~NVTl 184 (491)
T COG2272 161 QILALKWVRDNIE--A--------FGGDPQNVTL 184 (491)
T ss_pred HHHHHHHHHHHHH--H--------hCCCccceEE
Confidence 9999999999999 4 4556667765
No 3
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.85 E-value=2.8e-21 Score=152.12 Aligned_cols=81 Identities=37% Similarity=0.613 Sum_probs=74.8
Q ss_pred CCCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCCCCchHHHHHHHHHHHHHhhhcccCCCCCc
Q 042415 58 KQTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEHLVAAAYEDSWAALKWVASHFKISAHGYET 137 (151)
Q Consensus 58 ~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~~~p~~l~D~~~al~wl~~~~~~~~~ggd~ 137 (151)
..+.|+|||+|||||+.|+.. .++..++.++...|++|+++||||+||++||++++|+.+|++|+.+|++
T Consensus 76 ~~~~p~vly~HGGg~~~g~~~--~~~~~~~~~~~~~g~~vv~vdYrlaPe~~~p~~~~d~~~a~~~l~~~~~-------- 145 (312)
T COG0657 76 AATAPVVLYLHGGGWVLGSLR--THDALVARLAAAAGAVVVSVDYRLAPEHPFPAALEDAYAAYRWLRANAA-------- 145 (312)
T ss_pred CCCCcEEEEEeCCeeeecChh--hhHHHHHHHHHHcCCEEEecCCCCCCCCCCCchHHHHHHHHHHHHhhhH--------
Confidence 367999999999999999997 4678999999999999999999999999999999999999999999998
Q ss_pred cccCCCCCCceee
Q 042415 138 WLNTRANFTCVFT 150 (151)
Q Consensus 138 ~~~~~~D~~rv~l 150 (151)
.+++|++||+|
T Consensus 146 --~~g~dp~~i~v 156 (312)
T COG0657 146 --ELGIDPSRIAV 156 (312)
T ss_pred --hhCCCccceEE
Confidence 46888888886
No 4
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.82 E-value=1.5e-20 Score=139.53 Aligned_cols=75 Identities=37% Similarity=0.563 Sum_probs=64.3
Q ss_pred EEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCCCCchHHHHHHHHHHHHHhhhcccCCCCCccccCCC
Q 042415 64 LFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEHLVAAAYEDSWAALKWVASHFKISAHGYETWLNTRA 143 (151)
Q Consensus 64 vv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~~~p~~l~D~~~al~wl~~~~~~~~~ggd~~~~~~~ 143 (151)
|||||||||+.|+... +..+++.++.+.|++|++++|||+|+++||++++|+.+|++|+.+|+. .++.
T Consensus 1 v~~~HGGg~~~g~~~~--~~~~~~~la~~~g~~v~~~~Yrl~p~~~~p~~~~D~~~a~~~l~~~~~----------~~~~ 68 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKES--HWPFAARLAAERGFVVVSIDYRLAPEAPFPAALEDVKAAYRWLLKNAD----------KLGI 68 (211)
T ss_dssp EEEE--STTTSCGTTT--HHHHHHHHHHHHTSEEEEEE---TTTSSTTHHHHHHHHHHHHHHHTHH----------HHTE
T ss_pred CEEECCcccccCChHH--HHHHHHHHHhhccEEEEEeeccccccccccccccccccceeeeccccc----------cccc
Confidence 7999999999999974 678899999877999999999999999999999999999999999987 5688
Q ss_pred CCCceee
Q 042415 144 NFTCVFT 150 (151)
Q Consensus 144 D~~rv~l 150 (151)
|++||+|
T Consensus 69 d~~~i~l 75 (211)
T PF07859_consen 69 DPERIVL 75 (211)
T ss_dssp EEEEEEE
T ss_pred cccceEE
Confidence 8899887
No 5
>PRK10162 acetyl esterase; Provisional
Probab=99.80 E-value=3.2e-19 Score=141.33 Aligned_cols=95 Identities=24% Similarity=0.402 Sum_probs=79.4
Q ss_pred eeeeEEeCCCCC--------CCCCCCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCCCCchHH
Q 042415 43 FSKDVVIVPEKD--------PPLKQTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEHLVAAAY 114 (151)
Q Consensus 43 ~~~d~~~~~~~~--------P~~~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~~~p~~l 114 (151)
..+++.+....+ |+. +..|+|||+|||||+.|+.. .+..+++.|+.+.|+.|++++||++|+++||.++
T Consensus 56 ~~~~~~i~~~~g~i~~~~y~P~~-~~~p~vv~~HGGg~~~g~~~--~~~~~~~~la~~~g~~Vv~vdYrlape~~~p~~~ 132 (318)
T PRK10162 56 ATRAYMVPTPYGQVETRLYYPQP-DSQATLFYLHGGGFILGNLD--THDRIMRLLASYSGCTVIGIDYTLSPEARFPQAI 132 (318)
T ss_pred eEEEEEEecCCCceEEEEECCCC-CCCCEEEEEeCCcccCCCch--hhhHHHHHHHHHcCCEEEEecCCCCCCCCCCCcH
Confidence 355565554332 643 35699999999999999987 4677899999988999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCCCccccCCCCCCceee
Q 042415 115 EDSWAALKWVASHFKISAHGYETWLNTRANFTCVFT 150 (151)
Q Consensus 115 ~D~~~al~wl~~~~~~~~~ggd~~~~~~~D~~rv~l 150 (151)
+|+.++++|+.+|++ .+++|++||+|
T Consensus 133 ~D~~~a~~~l~~~~~----------~~~~d~~~i~l 158 (318)
T PRK10162 133 EEIVAVCCYFHQHAE----------DYGINMSRIGF 158 (318)
T ss_pred HHHHHHHHHHHHhHH----------HhCCChhHEEE
Confidence 999999999999988 45678888876
No 6
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=99.77 E-value=1.5e-19 Score=150.34 Aligned_cols=96 Identities=29% Similarity=0.427 Sum_probs=66.5
Q ss_pred eeeeEEeCCCCCCCCC---CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCC-------C--CC-
Q 042415 43 FSKDVVIVPEKDPPLK---QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAP-------E--HL- 109 (151)
Q Consensus 43 ~~~d~~~~~~~~P~~~---~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap-------~--~~- 109 (151)
..+||.+-++..|+.. .++|||||||||||..|+.....+.. ..++.+.+++||+++|||++ + .+
T Consensus 104 ~sEDCL~LnI~~P~~~~~~~~lPV~v~ihGG~f~~G~~~~~~~~~--~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~~~~ 181 (535)
T PF00135_consen 104 QSEDCLYLNIYTPSNASSNSKLPVMVWIHGGGFMFGSGSFPPYDG--ASLAASKDVIVVTINYRLGAFGFLSLGDLDAPS 181 (535)
T ss_dssp BES---EEEEEEETSSSSTTSEEEEEEE--STTTSSCTTSGGGHT--HHHHHHHTSEEEEE----HHHHH-BSSSTTSHB
T ss_pred CCchHHHHhhhhccccccccccceEEEeecccccCCCcccccccc--cccccCCCEEEEEecccccccccccccccccCc
Confidence 3778888777777766 26899999999999999984323332 34555559999999999983 2 23
Q ss_pred CchHHHHHHHHHHHHHhhhcccCCCCCccccCCCCCCceee
Q 042415 110 VAAAYEDSWAALKWVASHFKISAHGYETWLNTRANFTCVFT 150 (151)
Q Consensus 110 ~p~~l~D~~~al~wl~~~~~~~~~ggd~~~~~~~D~~rv~l 150 (151)
.+.++.|+++||+||++||+ .+++||+||+|
T Consensus 182 gN~Gl~Dq~~AL~WV~~nI~----------~FGGDp~~VTl 212 (535)
T PF00135_consen 182 GNYGLLDQRLALKWVQDNIA----------AFGGDPDNVTL 212 (535)
T ss_dssp STHHHHHHHHHHHHHHHHGG----------GGTEEEEEEEE
T ss_pred hhhhhhhhHHHHHHHHhhhh----------hcccCCcceee
Confidence 78999999999999999999 45666677776
No 7
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=99.72 E-value=3.1e-17 Score=136.25 Aligned_cols=93 Identities=28% Similarity=0.368 Sum_probs=72.3
Q ss_pred eeeEEeCCCCCCCC---CCCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCC-cEEEEEcCCCCCC---------CCC
Q 042415 44 SKDVVIVPEKDPPL---KQTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKAN-VIVVSIDYRLAPE---------HLV 110 (151)
Q Consensus 44 ~~d~~~~~~~~P~~---~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g-~~vv~v~YRlap~---------~~~ 110 (151)
++||.+-++..|.. .++.|||||||||||..|+.... ....++.+.+ ++||+++|||++. .+.
T Consensus 75 sEdcl~l~i~~p~~~~~~~~~pv~v~ihGG~~~~g~~~~~----~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~~~~~ 150 (493)
T cd00312 75 SEDCLYLNVYTPKNTKPGNSLPVMVWIHGGGFMFGSGSLY----PGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPG 150 (493)
T ss_pred CCcCCeEEEEeCCCCCCCCCCCEEEEEcCCccccCCCCCC----ChHHHHhcCCCEEEEEecccccccccccCCCCCCCc
Confidence 46666555555754 36789999999999999998642 2246666655 9999999999873 355
Q ss_pred chHHHHHHHHHHHHHhhhcccCCCCCccccCCCCCCceee
Q 042415 111 AAAYEDSWAALKWVASHFKISAHGYETWLNTRANFTCVFT 150 (151)
Q Consensus 111 p~~l~D~~~al~wl~~~~~~~~~ggd~~~~~~~D~~rv~l 150 (151)
+.++.|+.+|++|+++||+ .+++|++||+|
T Consensus 151 n~g~~D~~~al~wv~~~i~----------~fggd~~~v~~ 180 (493)
T cd00312 151 NYGLKDQRLALKWVQDNIA----------AFGGDPDSVTI 180 (493)
T ss_pred chhHHHHHHHHHHHHHHHH----------HhCCCcceEEE
Confidence 7899999999999999999 35667788876
No 8
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=99.66 E-value=1.4e-16 Score=129.98 Aligned_cols=98 Identities=30% Similarity=0.423 Sum_probs=80.2
Q ss_pred ceeeeeEEeCCCCCCC-CCCCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCC----------CCCC
Q 042415 41 VVFSKDVVIVPEKDPP-LKQTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLA----------PEHL 109 (151)
Q Consensus 41 ~~~~~d~~~~~~~~P~-~~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla----------p~~~ 109 (151)
.-.++||.|-++..|. ...+.-|+|||.||||..|+..-..|+. +.||...+++||+++||++ ||.+
T Consensus 114 t~lSEDCLYlNVW~P~~~p~n~tVlVWiyGGGF~sGt~SLdvYdG--k~la~~envIvVs~NYRvG~FGFL~l~~~~eaP 191 (601)
T KOG4389|consen 114 TELSEDCLYLNVWAPAADPYNLTVLVWIYGGGFYSGTPSLDVYDG--KFLAAVENVIVVSMNYRVGAFGFLYLPGHPEAP 191 (601)
T ss_pred CCcChhceEEEEeccCCCCCCceEEEEEEcCccccCCcceeeecc--ceeeeeccEEEEEeeeeeccceEEecCCCCCCC
Confidence 3355777777776674 3355569999999999999998767766 6788888999999999998 6788
Q ss_pred CchHHHHHHHHHHHHHhhhcccCCCCCccccCCCCCCceee
Q 042415 110 VAAAYEDSWAALKWVASHFKISAHGYETWLNTRANFTCVFT 150 (151)
Q Consensus 110 ~p~~l~D~~~al~wl~~~~~~~~~ggd~~~~~~~D~~rv~l 150 (151)
.+.++.|++.||+|+++||. ++++||+||.|
T Consensus 192 GNmGl~DQqLAl~WV~~Ni~----------aFGGnp~~vTL 222 (601)
T KOG4389|consen 192 GNMGLLDQQLALQWVQENIA----------AFGGNPSRVTL 222 (601)
T ss_pred CccchHHHHHHHHHHHHhHH----------HhCCCcceEEE
Confidence 99999999999999999999 45666677766
No 9
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=99.53 E-value=1.3e-14 Score=122.04 Aligned_cols=97 Identities=25% Similarity=0.299 Sum_probs=71.9
Q ss_pred eeeeEEeCCCCCCCCCCC--ceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCC---------CCCCc
Q 042415 43 FSKDVVIVPEKDPPLKQT--KSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAP---------EHLVA 111 (151)
Q Consensus 43 ~~~d~~~~~~~~P~~~~~--~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap---------~~~~p 111 (151)
..+||.+-++..|+.... .||+||||||||..|+..... ......++...+++||+++|||++ ..+.+
T Consensus 92 ~sEDCLylNV~tp~~~~~~~~pV~V~iHGG~~~~gs~~~~~-~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~~gN 170 (545)
T KOG1516|consen 92 GSEDCLYLNVYTPQGCSESKLPVMVYIHGGGFQFGSASSFE-IISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAAPGN 170 (545)
T ss_pred CcCCCceEEEeccCCCccCCCCEEEEEeCCceeeccccchh-hcCchhccccCCEEEEEecccceeceeeecCCCCCCCc
Confidence 347777766665766532 899999999999999964310 111134445558999999999983 33678
Q ss_pred hHHHHHHHHHHHHHhhhcccCCCCCccccCCCCCCceee
Q 042415 112 AAYEDSWAALKWVASHFKISAHGYETWLNTRANFTCVFT 150 (151)
Q Consensus 112 ~~l~D~~~al~wl~~~~~~~~~ggd~~~~~~~D~~rv~l 150 (151)
.++.|+..||+|+++||+ .+++|+++|+|
T Consensus 171 ~gl~Dq~~AL~wv~~~I~----------~FGGdp~~vTl 199 (545)
T KOG1516|consen 171 LGLFDQLLALRWVKDNIP----------SFGGDPKNVTL 199 (545)
T ss_pred ccHHHHHHHHHHHHHHHH----------hcCCCCCeEEE
Confidence 899999999999999999 45566677765
No 10
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=99.40 E-value=5e-13 Score=111.26 Aligned_cols=72 Identities=28% Similarity=0.478 Sum_probs=65.6
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCCCCchHHHHHHHHHHHHHhhhcccCCC
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEHLVAAAYEDSWAALKWVASHFKISAHG 134 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~~~p~~l~D~~~al~wl~~~~~~~~~g 134 (151)
..+-.|+++|||||+..+.. .|..+++.+|.++|+.+++|+|.|+||++||.++++|.-|+.|+.+|-+ ..|
T Consensus 394 ~S~sli~HcHGGGfVAqsSk--SHE~YLr~Wa~aL~cPiiSVdYSLAPEaPFPRaleEv~fAYcW~inn~a--llG 465 (880)
T KOG4388|consen 394 RSRSLIVHCHGGGFVAQSSK--SHEPYLRSWAQALGCPIISVDYSLAPEAPFPRALEEVFFAYCWAINNCA--LLG 465 (880)
T ss_pred CCceEEEEecCCceeeeccc--cccHHHHHHHHHhCCCeEEeeeccCCCCCCCcHHHHHHHHHHHHhcCHH--HhC
Confidence 34568899999999998876 4889999999999999999999999999999999999999999999987 554
No 11
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=98.89 E-value=5.9e-09 Score=84.08 Aligned_cols=67 Identities=21% Similarity=0.455 Sum_probs=52.8
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhc-CCcEEEEEcCCCCC----CCCCchHHHHHHHHHHHHHhh
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAK-ANVIVVSIDYRLAP----EHLVAAAYEDSWAALKWVASH 127 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~-~g~~vv~v~YRlap----~~~~p~~l~D~~~al~wl~~~ 127 (151)
+..|||||+|||||..+.... .-.++..+... -...++.+||.|++ .+.||.|+.++.+++++|.+.
T Consensus 120 k~DpVlIYlHGGGY~l~~~p~--qi~~L~~i~~~l~~~SILvLDYsLt~~~~~~~~yPtQL~qlv~~Y~~Lv~~ 191 (374)
T PF10340_consen 120 KSDPVLIYLHGGGYFLGTTPS--QIEFLLNIYKLLPEVSILVLDYSLTSSDEHGHKYPTQLRQLVATYDYLVES 191 (374)
T ss_pred CCCcEEEEEcCCeeEecCCHH--HHHHHHHHHHHcCCCeEEEEeccccccccCCCcCchHHHHHHHHHHHHHhc
Confidence 457999999999999999863 22333222221 15789999999999 889999999999999999943
No 12
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=98.44 E-value=4.7e-07 Score=67.61 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=55.7
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCC-CCchHHHHHHHHHHHHHhhhc
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEH-LVAAAYEDSWAALKWVASHFK 129 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~-~~p~~l~D~~~al~wl~~~~~ 129 (151)
...|+.||||||.|..|+... .- .+..-|.+.|+.|++++|-|+|+. ....-+.|....+.|+.+--+
T Consensus 65 ~~~klfIfIHGGYW~~g~rk~--cl-siv~~a~~~gY~vasvgY~l~~q~htL~qt~~~~~~gv~filk~~~ 133 (270)
T KOG4627|consen 65 NQAKLFIFIHGGYWQEGDRKM--CL-SIVGPAVRRGYRVASVGYNLCPQVHTLEQTMTQFTHGVNFILKYTE 133 (270)
T ss_pred CCccEEEEEecchhhcCchhc--cc-chhhhhhhcCeEEEEeccCcCcccccHHHHHHHHHHHHHHHHHhcc
Confidence 366899999999999999863 12 234556667999999999999987 788999999999999987544
No 13
>PLN00021 chlorophyllase
Probab=98.33 E-value=6.6e-06 Score=65.40 Aligned_cols=84 Identities=24% Similarity=0.354 Sum_probs=59.2
Q ss_pred CCCCCCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEc-CCCCCCCCCchHHHHHHHHHHHHHhhhcccCC
Q 042415 55 PPLKQTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSID-YRLAPEHLVAAAYEDSWAALKWVASHFKISAH 133 (151)
Q Consensus 55 P~~~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~-YRlap~~~~p~~l~D~~~al~wl~~~~~~~~~ 133 (151)
|...++.|+|||+||+++. .. .|...++.|++. |+.|+.+| |++++.. ....++|+.+++.|+.++.+ .+
T Consensus 46 P~~~g~~PvVv~lHG~~~~---~~--~y~~l~~~Las~-G~~VvapD~~g~~~~~-~~~~i~d~~~~~~~l~~~l~--~~ 116 (313)
T PLN00021 46 PSEAGTYPVLLFLHGYLLY---NS--FYSQLLQHIASH-GFIVVAPQLYTLAGPD-GTDEIKDAAAVINWLSSGLA--AV 116 (313)
T ss_pred CCCCCCCCEEEEECCCCCC---cc--cHHHHHHHHHhC-CCEEEEecCCCcCCCC-chhhHHHHHHHHHHHHhhhh--hh
Confidence 6655788999999998853 22 467788888887 99999999 5555543 45678899999999997654 11
Q ss_pred CCCccccCCCCCCceee
Q 042415 134 GYETWLNTRANFTCVFT 150 (151)
Q Consensus 134 ggd~~~~~~~D~~rv~l 150 (151)
.=+ ....|++|++|
T Consensus 117 l~~---~~~~d~~~v~l 130 (313)
T PLN00021 117 LPE---GVRPDLSKLAL 130 (313)
T ss_pred ccc---ccccChhheEE
Confidence 000 13466777765
No 14
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=98.32 E-value=6.7e-06 Score=70.85 Aligned_cols=75 Identities=17% Similarity=0.140 Sum_probs=55.8
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCC-----------CCCchHHHHHHHHHHHHHhh
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPE-----------HLVAAAYEDSWAALKWVASH 127 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~-----------~~~p~~l~D~~~al~wl~~~ 127 (151)
++.|+|||+|||-...-.. .+....+.++.+ |++|+.+|||=+-. ...-..++|+.++++|+.+.
T Consensus 392 k~yP~i~~~hGGP~~~~~~---~~~~~~q~~~~~-G~~V~~~n~RGS~GyG~~F~~~~~~~~g~~~~~D~~~~~~~l~~~ 467 (620)
T COG1506 392 KKYPLIVYIHGGPSAQVGY---SFNPEIQVLASA-GYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVDALVKL 467 (620)
T ss_pred CCCCEEEEeCCCCcccccc---ccchhhHHHhcC-CeEEEEeCCCCCCccHHHHHHhhhhccCCccHHHHHHHHHHHHhC
Confidence 4579999999997433331 355666777777 99999999996543 22345799999999988766
Q ss_pred hcccCCCCCccccCCCCCCceee
Q 042415 128 FKISAHGYETWLNTRANFTCVFT 150 (151)
Q Consensus 128 ~~~~~~ggd~~~~~~~D~~rv~l 150 (151)
- .+|++||.|
T Consensus 468 ~-------------~~d~~ri~i 477 (620)
T COG1506 468 P-------------LVDPERIGI 477 (620)
T ss_pred C-------------CcChHHeEE
Confidence 4 388888876
No 15
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=98.03 E-value=1.3e-05 Score=59.79 Aligned_cols=80 Identities=10% Similarity=0.040 Sum_probs=51.9
Q ss_pred CCCC-CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCC-------------CCCchHHHHHHHH
Q 042415 55 PPLK-QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPE-------------HLVAAAYEDSWAA 120 (151)
Q Consensus 55 P~~~-~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~-------------~~~p~~l~D~~~a 120 (151)
|++. ++.|+||++||++........ ......++.+.|+.|+.++|+-.-. ........|+...
T Consensus 6 P~~~~~~~P~vv~lHG~~~~~~~~~~---~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (212)
T TIGR01840 6 PAGLTGPRALVLALHGCGQTASAYVI---DWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVESLHQL 82 (212)
T ss_pred CCCCCCCCCEEEEeCCCCCCHHHHhh---hcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccHHHHHHH
Confidence 4443 678999999999865332210 0113466777799999999975310 1122346677777
Q ss_pred HHHHHhhhcccCCCCCccccCCCCCCceee
Q 042415 121 LKWVASHFKISAHGYETWLNTRANFTCVFT 150 (151)
Q Consensus 121 l~wl~~~~~~~~~ggd~~~~~~~D~~rv~l 150 (151)
+.++.++ +.+|++||+|
T Consensus 83 i~~~~~~-------------~~id~~~i~l 99 (212)
T TIGR01840 83 IDAVKAN-------------YSIDPNRVYV 99 (212)
T ss_pred HHHHHHh-------------cCcChhheEE
Confidence 7777764 3588899887
No 16
>PRK10115 protease 2; Provisional
Probab=97.96 E-value=0.00017 Score=63.02 Aligned_cols=92 Identities=13% Similarity=-0.008 Sum_probs=64.4
Q ss_pred eeeeeEEeCCCCC----------CCC--CCCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCC-
Q 042415 42 VFSKDVVIVPEKD----------PPL--KQTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEH- 108 (151)
Q Consensus 42 ~~~~d~~~~~~~~----------P~~--~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~- 108 (151)
...+.+.+...++ |.. .++.|+|||+|||-...-.. .+......|+.+ |++|+.++||=+.+.
T Consensus 414 ~~~e~v~~~s~DG~~Ip~~l~~~~~~~~~~~~P~ll~~hGg~~~~~~p---~f~~~~~~l~~r-G~~v~~~n~RGs~g~G 489 (686)
T PRK10115 414 YRSEHLWITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDA---DFSFSRLSLLDR-GFVYAIVHVRGGGELG 489 (686)
T ss_pred cEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCC---CccHHHHHHHHC-CcEEEEEEcCCCCccC
Confidence 3556666655554 321 25679999999976443333 355555677776 999999999987543
Q ss_pred ----------CCchHHHHHHHHHHHHHhhhcccCCCCCccccCCCCCCceee
Q 042415 109 ----------LVAAAYEDSWAALKWVASHFKISAHGYETWLNTRANFTCVFT 150 (151)
Q Consensus 109 ----------~~p~~l~D~~~al~wl~~~~~~~~~ggd~~~~~~~D~~rv~l 150 (151)
.-...++|+.+|.+||.++.- .|++|+.+
T Consensus 490 ~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~-------------~d~~rl~i 528 (686)
T PRK10115 490 QQWYEDGKFLKKKNTFNDYLDACDALLKLGY-------------GSPSLCYG 528 (686)
T ss_pred HHHHHhhhhhcCCCcHHHHHHHHHHHHHcCC-------------CChHHeEE
Confidence 123679999999999987743 77777765
No 17
>PRK10566 esterase; Provisional
Probab=97.92 E-value=0.00021 Score=53.91 Aligned_cols=63 Identities=14% Similarity=0.206 Sum_probs=43.5
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCC-------CCC-------chHHHHHHHHHHHH
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPE-------HLV-------AAAYEDSWAALKWV 124 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~-------~~~-------p~~l~D~~~al~wl 124 (151)
++.|+||++||++ ++.. .+..+++.|+.+ |+.|+.++||-... .++ ...++|+.+++.|+
T Consensus 25 ~~~p~vv~~HG~~---~~~~--~~~~~~~~l~~~-G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 98 (249)
T PRK10566 25 TPLPTVFFYHGFT---SSKL--VYSYFAVALAQA-GFRVIMPDAPMHGARFSGDEARRLNHFWQILLQNMQEFPTLRAAI 98 (249)
T ss_pred CCCCEEEEeCCCC---cccc--hHHHHHHHHHhC-CCEEEEecCCcccccCCCccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 4679999999964 3333 355667777776 99999999996321 111 13467777888888
Q ss_pred Hhh
Q 042415 125 ASH 127 (151)
Q Consensus 125 ~~~ 127 (151)
.+.
T Consensus 99 ~~~ 101 (249)
T PRK10566 99 REE 101 (249)
T ss_pred Hhc
Confidence 764
No 18
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=97.86 E-value=9.5e-05 Score=57.23 Aligned_cols=84 Identities=17% Similarity=0.252 Sum_probs=62.3
Q ss_pred CCCCCCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEc-CCCCCCCCCchHHHHHHHHHHHHHhhhcccCC
Q 042415 55 PPLKQTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSID-YRLAPEHLVAAAYEDSWAALKWVASHFKISAH 133 (151)
Q Consensus 55 P~~~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~-YRlap~~~~p~~l~D~~~al~wl~~~~~~~~~ 133 (151)
|+.....||+||+||=. ...+ .|..+++++|+. |++||.++ |.+.. ..-...+++....+.|+.++.+. .+
T Consensus 11 P~~~g~yPVv~f~~G~~----~~~s-~Ys~ll~hvASh-GyIVV~~d~~~~~~-~~~~~~~~~~~~vi~Wl~~~L~~-~l 82 (259)
T PF12740_consen 11 PSSAGTYPVVLFLHGFL----LINS-WYSQLLEHVASH-GYIVVAPDLYSIGG-PDDTDEVASAAEVIDWLAKGLES-KL 82 (259)
T ss_pred cCCCCCcCEEEEeCCcC----CCHH-HHHHHHHHHHhC-ceEEEEecccccCC-CCcchhHHHHHHHHHHHHhcchh-hc
Confidence 77778899999999955 2222 488999999998 99999999 55444 34456788888999999987761 12
Q ss_pred CCCccccCCCCCCceee
Q 042415 134 GYETWLNTRANFTCVFT 150 (151)
Q Consensus 134 ggd~~~~~~~D~~rv~l 150 (151)
. +.-..|++|+.|
T Consensus 83 ~----~~v~~D~s~l~l 95 (259)
T PF12740_consen 83 P----LGVKPDFSKLAL 95 (259)
T ss_pred c----ccccccccceEE
Confidence 2 223579999876
No 19
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=97.41 E-value=0.0017 Score=50.54 Aligned_cols=71 Identities=17% Similarity=0.087 Sum_probs=46.4
Q ss_pred CCCCCCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCC-------CCCCchHHHHHHHHHHHHHhh
Q 042415 55 PPLKQTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAP-------EHLVAAAYEDSWAALKWVASH 127 (151)
Q Consensus 55 P~~~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap-------~~~~p~~l~D~~~al~wl~~~ 127 (151)
|...++.|+||++||-|-...... ..+...++.|+.. |+.|+.+|||=.- ...+...++|+..+++|++++
T Consensus 19 p~~~~~~~~VlllHG~g~~~~~~~-~~~~~la~~La~~-Gy~Vl~~Dl~G~G~S~g~~~~~~~~~~~~Dv~~ai~~L~~~ 96 (266)
T TIGR03101 19 PVAVGPRGVVIYLPPFAEEMNKSR-RMVALQARAFAAG-GFGVLQIDLYGCGDSAGDFAAARWDVWKEDVAAAYRWLIEQ 96 (266)
T ss_pred CCCCCCceEEEEECCCcccccchh-HHHHHHHHHHHHC-CCEEEEECCCCCCCCCCccccCCHHHHHHHHHHHHHHHHhc
Confidence 433345799999999553222111 1233455677765 9999999999532 123445679999999999765
No 20
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=97.39 E-value=0.00035 Score=52.95 Aligned_cols=41 Identities=17% Similarity=0.072 Sum_probs=27.3
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcC
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDY 102 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~Y 102 (151)
++.|+||.+||.+-. ........-...+|.+.|++|+-++=
T Consensus 14 ~~~PLVv~LHG~~~~---a~~~~~~s~~~~lAd~~GfivvyP~~ 54 (220)
T PF10503_consen 14 GPVPLVVVLHGCGQS---AEDFAAGSGWNALADREGFIVVYPEQ 54 (220)
T ss_pred CCCCEEEEeCCCCCC---HHHHHhhcCHHHHhhcCCeEEEcccc
Confidence 468999999999742 22100111235789999999988773
No 21
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=97.25 E-value=0.0028 Score=43.39 Aligned_cols=54 Identities=20% Similarity=0.213 Sum_probs=39.2
Q ss_pred EEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCCCCchHHHHHHHHHHHHH
Q 042415 63 SLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEHLVAAAYEDSWAALKWVA 125 (151)
Q Consensus 63 vvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~~~p~~l~D~~~al~wl~ 125 (151)
+||++||++. +.. .+..+++.++++ |+.|+.++||..... ....+...++.++.
T Consensus 1 ~vv~~HG~~~---~~~--~~~~~~~~l~~~-G~~v~~~~~~~~~~~---~~~~~~~~~~~~~~ 54 (145)
T PF12695_consen 1 VVVLLHGWGG---SRR--DYQPLAEALAEQ-GYAVVAFDYPGHGDS---DGADAVERVLADIR 54 (145)
T ss_dssp EEEEECTTTT---TTH--HHHHHHHHHHHT-TEEEEEESCTTSTTS---HHSHHHHHHHHHHH
T ss_pred CEEEECCCCC---CHH--HHHHHHHHHHHC-CCEEEEEecCCCCcc---chhHHHHHHHHHHH
Confidence 5899999985 332 467788888888 999999999876554 34445555566654
No 22
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=97.03 E-value=0.0025 Score=49.53 Aligned_cols=68 Identities=18% Similarity=0.396 Sum_probs=52.9
Q ss_pred CCCCCCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEc-CCCCCCCCCchHHHHHHHHHHHHHhhhc
Q 042415 55 PPLKQTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSID-YRLAPEHLVAAAYEDSWAALKWVASHFK 129 (151)
Q Consensus 55 P~~~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~-YRlap~~~~p~~l~D~~~al~wl~~~~~ 129 (151)
|......|+|+|+|| |..-+. .|..+++++++. |++||.++ |.+.+ -.-..-+++......|+.+...
T Consensus 40 P~~~G~yPVilF~HG--~~l~ns---~Ys~lL~HIASH-GfIVVAPQl~~~~~-p~~~~Ei~~aa~V~~WL~~gL~ 108 (307)
T PF07224_consen 40 PSEAGTYPVILFLHG--FNLYNS---FYSQLLAHIASH-GFIVVAPQLYTLFP-PDGQDEIKSAASVINWLPEGLQ 108 (307)
T ss_pred CCcCCCccEEEEeec--hhhhhH---HHHHHHHHHhhc-CeEEEechhhcccC-CCchHHHHHHHHHHHHHHhhhh
Confidence 666789999999998 443332 588899999998 99999998 55555 2345677888889999998765
No 23
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=96.98 E-value=0.0014 Score=48.44 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=38.0
Q ss_pred HHHHHHhcCCcEEEEEcCCCCCCC-----------CCchHHHHHHHHHHHHHhhhcccCCCCCccccCCCCCCceee
Q 042415 85 YIGSLSAKANVIVVSIDYRLAPEH-----------LVAAAYEDSWAALKWVASHFKISAHGYETWLNTRANFTCVFT 150 (151)
Q Consensus 85 ~~~~la~~~g~~vv~v~YRlap~~-----------~~p~~l~D~~~al~wl~~~~~~~~~ggd~~~~~~~D~~rv~l 150 (151)
....||.+ |++|+.++||-+... .-...++|+.++++|+.++.. +|++||.|
T Consensus 6 ~~~~la~~-Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~-------------iD~~ri~i 68 (213)
T PF00326_consen 6 NAQLLASQ-GYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYY-------------IDPDRIGI 68 (213)
T ss_dssp HHHHHHTT-T-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTS-------------EEEEEEEE
T ss_pred HHHHHHhC-CEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhcccc-------------ccceeEEE
Confidence 33455565 999999999988642 223579999999999987754 89999876
No 24
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=96.96 E-value=0.0067 Score=47.85 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=44.5
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCC---CC-----CCCCchHHHHHHHHHHHHHhh
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRL---AP-----EHLVAAAYEDSWAALKWVASH 127 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl---ap-----~~~~p~~l~D~~~al~wl~~~ 127 (151)
...++||++||.+ ++.. ..+..++..|+.+ |+.|+.+|||= ++ ...+...++|+.++++++...
T Consensus 57 ~~~~~VvllHG~~---~~~~-~~~~~~~~~L~~~-Gy~V~~~D~rGhG~S~~~~~~~~~~~~~~~D~~~~i~~l~~~ 128 (330)
T PLN02298 57 PPRALIFMVHGYG---NDIS-WTFQSTAIFLAQM-GFACFALDLEGHGRSEGLRAYVPNVDLVVEDCLSFFNSVKQR 128 (330)
T ss_pred CCceEEEEEcCCC---CCcc-eehhHHHHHHHhC-CCEEEEecCCCCCCCCCccccCCCHHHHHHHHHHHHHHHHhc
Confidence 4678999999976 2221 1244556677766 99999999992 22 113455788999999998764
No 25
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.91 E-value=0.015 Score=44.50 Aligned_cols=68 Identities=19% Similarity=0.144 Sum_probs=49.3
Q ss_pred CCCCCCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEc--CCCCCCCC-----------------CchHHH
Q 042415 55 PPLKQTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSID--YRLAPEHL-----------------VAAAYE 115 (151)
Q Consensus 55 P~~~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~--YRlap~~~-----------------~p~~l~ 115 (151)
|+...+.|+||.+|+ +.|-.. .....+++||.+ |++|+.++ +|..+... ....+.
T Consensus 21 P~~~~~~P~VIv~he---i~Gl~~--~i~~~a~rlA~~-Gy~v~~Pdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (236)
T COG0412 21 PAGAGGFPGVIVLHE---IFGLNP--HIRDVARRLAKA-GYVVLAPDLYGRQGDPTDIEDEPAELETGLVERVDPAEVLA 94 (236)
T ss_pred CCcCCCCCEEEEEec---ccCCch--HHHHHHHHHHhC-CcEEEechhhccCCCCCcccccHHHHhhhhhccCCHHHHHH
Confidence 776655599999998 334443 467889999998 99999988 33332111 136788
Q ss_pred HHHHHHHHHHhhh
Q 042415 116 DSWAALKWVASHF 128 (151)
Q Consensus 116 D~~~al~wl~~~~ 128 (151)
|+.+++.||..+-
T Consensus 95 d~~a~~~~L~~~~ 107 (236)
T COG0412 95 DIDAALDYLARQP 107 (236)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999998775
No 26
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=96.90 E-value=0.007 Score=46.87 Aligned_cols=69 Identities=20% Similarity=0.190 Sum_probs=44.8
Q ss_pred CCCCCCceEEEEEeCC-ccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCC-----CCCchHHHHHHHHHHHHHhh
Q 042415 55 PPLKQTKSSLFYYHGG-GLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPE-----HLVAAAYEDSWAALKWVASH 127 (151)
Q Consensus 55 P~~~~~~Pvvv~iHGG-g~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~-----~~~p~~l~D~~~al~wl~~~ 127 (151)
|.+.++ +.||++||| ++..|+.. .+..+++.|+++ |+.|+.+|+|=--+ ..+....+|+.+++++++++
T Consensus 21 p~~~~~-~~vv~i~gg~~~~~g~~~--~~~~la~~l~~~-G~~v~~~Dl~G~G~S~~~~~~~~~~~~d~~~~~~~l~~~ 95 (274)
T TIGR03100 21 PGASHT-TGVLIVVGGPQYRVGSHR--QFVLLARRLAEA-GFPVLRFDYRGMGDSEGENLGFEGIDADIAAAIDAFREA 95 (274)
T ss_pred CCCCCC-CeEEEEeCCccccCCchh--HHHHHHHHHHHC-CCEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 443333 345555554 46666643 345567778776 99999999983211 23445678999999999865
No 27
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=96.84 E-value=0.019 Score=45.85 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=44.6
Q ss_pred CCCCCCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCC-----C---CCCchHHHHHHHHHHHHHh
Q 042415 55 PPLKQTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAP-----E---HLVAAAYEDSWAALKWVAS 126 (151)
Q Consensus 55 P~~~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap-----~---~~~p~~l~D~~~al~wl~~ 126 (151)
|.+.+..|+||++||.|- +.. ..+..++..|+.. |+.|+.+|||=-- . ..+...++|+.+.+.++..
T Consensus 81 p~~~~~~~~iv~lHG~~~---~~~-~~~~~~~~~l~~~-g~~v~~~D~~G~G~S~~~~~~~~~~~~~~~dv~~~l~~l~~ 155 (349)
T PLN02385 81 PENSRPKAAVCFCHGYGD---TCT-FFFEGIARKIASS-GYGVFAMDYPGFGLSEGLHGYIPSFDDLVDDVIEHYSKIKG 155 (349)
T ss_pred cCCCCCCeEEEEECCCCC---ccc-hHHHHHHHHHHhC-CCEEEEecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 544456799999999653 221 1234566777765 9999999998321 1 1344567778878877764
Q ss_pred h
Q 042415 127 H 127 (151)
Q Consensus 127 ~ 127 (151)
+
T Consensus 156 ~ 156 (349)
T PLN02385 156 N 156 (349)
T ss_pred c
Confidence 3
No 28
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=96.83 E-value=0.016 Score=47.74 Aligned_cols=68 Identities=12% Similarity=0.048 Sum_probs=39.2
Q ss_pred CCCCCCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCC-CC---chHHHHHHHHHHHHHhh
Q 042415 55 PPLKQTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEH-LV---AAAYEDSWAALKWVASH 127 (151)
Q Consensus 55 P~~~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~-~~---p~~l~D~~~al~wl~~~ 127 (151)
|+..++.|+||.+||.+ +... ..+..++..++.+ |+.|+.+|||=.-+. .+ ...-....+++.|+.+.
T Consensus 188 P~~~~~~P~Vli~gG~~---~~~~-~~~~~~~~~La~~-Gy~vl~~D~pG~G~s~~~~~~~d~~~~~~avld~l~~~ 259 (414)
T PRK05077 188 PKGDGPFPTVLVCGGLD---SLQT-DYYRLFRDYLAPR-GIAMLTIDMPSVGFSSKWKLTQDSSLLHQAVLNALPNV 259 (414)
T ss_pred CCCCCCccEEEEeCCcc---cchh-hhHHHHHHHHHhC-CCEEEEECCCCCCCCCCCCccccHHHHHHHHHHHHHhC
Confidence 66446789888655533 2222 1344556677766 999999999943222 11 12222234667777654
No 29
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.79 E-value=0.0029 Score=49.79 Aligned_cols=83 Identities=18% Similarity=0.139 Sum_probs=49.2
Q ss_pred CCCC-CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEE-cCCCC--CCCCC--------chHHHHHHHHHH
Q 042415 55 PPLK-QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSI-DYRLA--PEHLV--------AAAYEDSWAALK 122 (151)
Q Consensus 55 P~~~-~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v-~YRla--p~~~~--------p~~l~D~~~al~ 122 (151)
|... ++.|+||++||++ ++.....+..-...+|.+.|+.|+-+ .|.-. +.+.+ ...++|+-.-.+
T Consensus 54 P~g~~~~apLvv~LHG~~---~sgag~~~~sg~d~lAd~~gFlV~yPdg~~~~wn~~~~~~~~~p~~~~~g~ddVgflr~ 130 (312)
T COG3509 54 PPGLPSGAPLVVVLHGSG---GSGAGQLHGTGWDALADREGFLVAYPDGYDRAWNANGCGNWFGPADRRRGVDDVGFLRA 130 (312)
T ss_pred CCCCCCCCCEEEEEecCC---CChHHhhcccchhhhhcccCcEEECcCccccccCCCcccccCCcccccCCccHHHHHHH
Confidence 4443 5569999999997 34321112222368899999999888 45543 22211 335556543333
Q ss_pred HHHhhhcccCCCCCccccCCCCCCceee
Q 042415 123 WVASHFKISAHGYETWLNTRANFTCVFT 150 (151)
Q Consensus 123 wl~~~~~~~~~ggd~~~~~~~D~~rv~l 150 (151)
-+.+-+. .|++|+.||||
T Consensus 131 lva~l~~----------~~gidp~RVyv 148 (312)
T COG3509 131 LVAKLVN----------EYGIDPARVYV 148 (312)
T ss_pred HHHHHHH----------hcCcCcceEEE
Confidence 3333333 47899999997
No 30
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=96.64 E-value=0.019 Score=44.52 Aligned_cols=42 Identities=14% Similarity=0.078 Sum_probs=28.5
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCC
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYR 103 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YR 103 (151)
++.|+|+++||++ ++.........+..++.+.|+.||.+++.
T Consensus 40 ~~~P~vvllHG~~---~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~ 81 (275)
T TIGR02821 40 GPVPVLWYLSGLT---CTHENFMIKAGAQRFAAEHGLALVAPDTS 81 (275)
T ss_pred CCCCEEEEccCCC---CCccHHHhhhHHHHHHhhcCcEEEEeCCC
Confidence 5689999999987 33321111223456777779999999983
No 31
>PRK10985 putative hydrolase; Provisional
Probab=96.62 E-value=0.013 Score=46.37 Aligned_cols=65 Identities=20% Similarity=0.330 Sum_probs=44.1
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCC--CC-----chHHHHHHHHHHHHHhh
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEH--LV-----AAAYEDSWAALKWVASH 127 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~--~~-----p~~l~D~~~al~wl~~~ 127 (151)
...|+||++||.+ |+........++..++.+ |+.|+.+|||=.-.. .. ...++|+..+++|++++
T Consensus 56 ~~~p~vll~HG~~---g~~~~~~~~~~~~~l~~~-G~~v~~~d~rG~g~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 127 (324)
T PRK10985 56 RHKPRLVLFHGLE---GSFNSPYAHGLLEAAQKR-GWLGVVMHFRGCSGEPNRLHRIYHSGETEDARFFLRWLQRE 127 (324)
T ss_pred CCCCEEEEeCCCC---CCCcCHHHHHHHHHHHHC-CCEEEEEeCCCCCCCccCCcceECCCchHHHHHHHHHHHHh
Confidence 4679999999864 333321234466666665 999999999953111 11 23579999999999875
No 32
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=96.61 E-value=0.0034 Score=51.26 Aligned_cols=40 Identities=28% Similarity=0.455 Sum_probs=27.5
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCC
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRL 104 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 104 (151)
++.|||||=||=| |+.. .|..+|..||+. |++|++++.|=
T Consensus 98 ~~~PvvIFSHGlg---g~R~--~yS~~~~eLAS~-GyVV~aieHrD 137 (379)
T PF03403_consen 98 GKFPVVIFSHGLG---GSRT--SYSAICGELASH-GYVVAAIEHRD 137 (379)
T ss_dssp S-EEEEEEE--TT-----TT--TTHHHHHHHHHT-T-EEEEE---S
T ss_pred CCCCEEEEeCCCC---cchh--hHHHHHHHHHhC-CeEEEEeccCC
Confidence 6899999999966 6666 588899999999 99999999884
No 33
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=96.51 E-value=0.028 Score=41.80 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=53.0
Q ss_pred CCCCCCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCC--CCCCC---chHHHHHHHHHHHHHhhhc
Q 042415 55 PPLKQTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLA--PEHLV---AAAYEDSWAALKWVASHFK 129 (151)
Q Consensus 55 P~~~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla--p~~~~---p~~l~D~~~al~wl~~~~~ 129 (151)
|...+..|+.|-.|==-...|+.+........+.+ .+.|+.++-.|||-- .+..| --.++|+.+|+.|++.+-.
T Consensus 22 ~~~~~~~~iAli~HPHPl~gGtm~nkvv~~la~~l-~~~G~atlRfNfRgVG~S~G~fD~GiGE~~Da~aaldW~~~~hp 100 (210)
T COG2945 22 PAKTPAAPIALICHPHPLFGGTMNNKVVQTLARAL-VKRGFATLRFNFRGVGRSQGEFDNGIGELEDAAAALDWLQARHP 100 (210)
T ss_pred CCCCCCCceEEecCCCccccCccCCHHHHHHHHHH-HhCCceEEeecccccccccCcccCCcchHHHHHHHHHHHHhhCC
Confidence 44456788888888777777777654444444444 455999999999963 33344 4569999999999998755
No 34
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=96.49 E-value=0.0043 Score=49.54 Aligned_cols=91 Identities=20% Similarity=0.158 Sum_probs=56.5
Q ss_pred CceeeeeEEeCCCCC---------CC-CCCCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCC---
Q 042415 40 NVVFSKDVVIVPEKD---------PP-LKQTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAP--- 106 (151)
Q Consensus 40 ~~~~~~d~~~~~~~~---------P~-~~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap--- 106 (151)
..+...|+.+.+..+ |+ ..++.|+||.+||-|-..+. ... ...++.. |++|++++-|=-+
T Consensus 52 ~~~~vy~v~f~s~~g~~V~g~l~~P~~~~~~~Pavv~~hGyg~~~~~-----~~~-~~~~a~~-G~~vl~~d~rGqg~~~ 124 (320)
T PF05448_consen 52 PGVEVYDVSFESFDGSRVYGWLYRPKNAKGKLPAVVQFHGYGGRSGD-----PFD-LLPWAAA-GYAVLAMDVRGQGGRS 124 (320)
T ss_dssp SSEEEEEEEEEEGGGEEEEEEEEEES-SSSSEEEEEEE--TT--GGG-----HHH-HHHHHHT-T-EEEEE--TTTSSSS
T ss_pred CCEEEEEEEEEccCCCEEEEEEEecCCCCCCcCEEEEecCCCCCCCC-----ccc-ccccccC-CeEEEEecCCCCCCCC
Confidence 457778888877655 88 44899999999998743221 122 2345665 9999999976211
Q ss_pred ---------C---C------------CCchHHHHHHHHHHHHHhhhcccCCCCCccccCCCCCCceee
Q 042415 107 ---------E---H------------LVAAAYEDSWAALKWVASHFKISAHGYETWLNTRANFTCVFT 150 (151)
Q Consensus 107 ---------~---~------------~~p~~l~D~~~al~wl~~~~~~~~~ggd~~~~~~~D~~rv~l 150 (151)
. + -|-..+.|+..|+.++.+.-+ +|.+||.+
T Consensus 125 ~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpe-------------vD~~rI~v 179 (320)
T PF05448_consen 125 PDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPE-------------VDGKRIGV 179 (320)
T ss_dssp -B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTT-------------EEEEEEEE
T ss_pred CCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCC-------------cCcceEEE
Confidence 0 0 012467999999999997654 77777765
No 35
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=96.48 E-value=0.019 Score=44.73 Aligned_cols=66 Identities=14% Similarity=0.150 Sum_probs=40.1
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCCCCchHH-------HHHHHHHHHHHhh
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEHLVAAAY-------EDSWAALKWVASH 127 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~~~p~~l-------~D~~~al~wl~~~ 127 (151)
...|++|++|| |. ++........+...+..+.++.|+.+||+-.....++... +++...++++.++
T Consensus 34 ~~~p~vilIHG--~~-~~~~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~~y~~a~~~~~~v~~~la~~l~~L~~~ 106 (275)
T cd00707 34 PSRPTRFIIHG--WT-SSGEESWISDLRKAYLSRGDYNVIVVDWGRGANPNYPQAVNNTRVVGAELAKFLDFLVDN 106 (275)
T ss_pred CCCCcEEEEcC--CC-CCCCCcHHHHHHHHHHhcCCCEEEEEECccccccChHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 56789999999 33 2332212333444555555899999999876555555443 3445555665543
No 36
>PRK13604 luxD acyl transferase; Provisional
Probab=96.15 E-value=0.05 Score=43.29 Aligned_cols=63 Identities=10% Similarity=0.161 Sum_probs=46.4
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCC-C-C-CCC-----CCchHHHHHHHHHHHHHhh
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYR-L-A-PEH-----LVAAAYEDSWAALKWVASH 127 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YR-l-a-p~~-----~~p~~l~D~~~al~wl~~~ 127 (151)
++.++||..||=+ +.+. .+..+++.|+.+ |+.|+..|+| - + .+. .+-.+..|+.+|+.|++++
T Consensus 35 ~~~~~vIi~HGf~---~~~~--~~~~~A~~La~~-G~~vLrfD~rg~~GeS~G~~~~~t~s~g~~Dl~aaid~lk~~ 105 (307)
T PRK13604 35 KKNNTILIASGFA---RRMD--HFAGLAEYLSSN-GFHVIRYDSLHHVGLSSGTIDEFTMSIGKNSLLTVVDWLNTR 105 (307)
T ss_pred CCCCEEEEeCCCC---CChH--HHHHHHHHHHHC-CCEEEEecCCCCCCCCCCccccCcccccHHHHHHHHHHHHhc
Confidence 6778999999933 3332 366777888876 9999999975 3 3 122 2456789999999999875
No 37
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.011 Score=51.03 Aligned_cols=93 Identities=15% Similarity=-0.002 Sum_probs=61.6
Q ss_pred eeEEeCCCCCCCCC---CCceEEEEEeCCccccCCCCCcchHH--HHHHHHhcCCcEEEEEcCCCCCCC--CC-------
Q 042415 45 KDVVIVPEKDPPLK---QTKSSLFYYHGGGLFMGSPFCSTYHN--YIGSLSAKANVIVVSIDYRLAPEH--LV------- 110 (151)
Q Consensus 45 ~d~~~~~~~~P~~~---~~~Pvvv~iHGGg~~~g~~~~~~~~~--~~~~la~~~g~~vv~v~YRlap~~--~~------- 110 (151)
....|+-+..|.+- ++.|+++|+.||-=+.--.++..... -...||+. |++||.+|=|=+-.. +|
T Consensus 623 g~~lYgmiyKPhn~~pgkkYptvl~VYGGP~VQlVnnsfkgi~ylR~~~Lasl-Gy~Vv~IDnRGS~hRGlkFE~~ik~k 701 (867)
T KOG2281|consen 623 GLTLYGMIYKPHNFQPGKKYPTVLNVYGGPGVQLVNNSFKGIQYLRFCRLASL-GYVVVFIDNRGSAHRGLKFESHIKKK 701 (867)
T ss_pred CcEEEEEEEccccCCCCCCCceEEEEcCCCceEEeeccccceehhhhhhhhhc-ceEEEEEcCCCccccchhhHHHHhhc
Confidence 34444444446654 78999999999976554443211111 22456666 999999999865321 22
Q ss_pred --chHHHHHHHHHHHHHhhhcccCCCCCccccCCCCCCceee
Q 042415 111 --AAAYEDSWAALKWVASHFKISAHGYETWLNTRANFTCVFT 150 (151)
Q Consensus 111 --p~~l~D~~~al~wl~~~~~~~~~ggd~~~~~~~D~~rv~l 150 (151)
---++|+..+++||.++.. -.|++||-|
T Consensus 702 mGqVE~eDQVeglq~Laeq~g------------fidmdrV~v 731 (867)
T KOG2281|consen 702 MGQVEVEDQVEGLQMLAEQTG------------FIDMDRVGV 731 (867)
T ss_pred cCeeeehhhHHHHHHHHHhcC------------cccchheeE
Confidence 2358999999999998864 378888765
No 38
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=96.04 E-value=0.02 Score=48.86 Aligned_cols=71 Identities=18% Similarity=0.165 Sum_probs=47.5
Q ss_pred CCCCCCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCC--CCC---CC-chHHHHHHHHHHHHHhh
Q 042415 55 PPLKQTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLA--PEH---LV-AAAYEDSWAALKWVASH 127 (151)
Q Consensus 55 P~~~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla--p~~---~~-p~~l~D~~~al~wl~~~ 127 (151)
|++.++.|+||++||-|...+.... ........++.+ |+.|+.+|+|=. .+. .+ ....+|+.++++|+.++
T Consensus 16 P~~~~~~P~Il~~~gyg~~~~~~~~-~~~~~~~~l~~~-Gy~vv~~D~RG~g~S~g~~~~~~~~~~~D~~~~i~~l~~q 92 (550)
T TIGR00976 16 PAGGGPVPVILSRTPYGKDAGLRWG-LDKTEPAWFVAQ-GYAVVIQDTRGRGASEGEFDLLGSDEAADGYDLVDWIAKQ 92 (550)
T ss_pred cCCCCCCCEEEEecCCCCchhhccc-cccccHHHHHhC-CcEEEEEeccccccCCCceEecCcccchHHHHHHHHHHhC
Confidence 5555688999999987643321000 111233456666 999999999943 222 22 67899999999999876
No 39
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=95.71 E-value=0.05 Score=42.07 Aligned_cols=64 Identities=27% Similarity=0.378 Sum_probs=48.9
Q ss_pred CceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCC----CCchHHHHHHHHHHHHHhhh
Q 042415 60 TKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEH----LVAAAYEDSWAALKWVASHF 128 (151)
Q Consensus 60 ~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~----~~p~~l~D~~~al~wl~~~~ 128 (151)
..++++|.||=+.-.| ....++..+....++.+++.||+=.-.. .=-..++|+.+|++|+++.-
T Consensus 59 ~~~~lly~hGNa~Dlg-----q~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~psE~n~y~Di~avye~Lr~~~ 126 (258)
T KOG1552|consen 59 AHPTLLYSHGNAADLG-----QMVELFKELSIFLNCNVVSYDYSGYGRSSGKPSERNLYADIKAVYEWLRNRY 126 (258)
T ss_pred cceEEEEcCCcccchH-----HHHHHHHHHhhcccceEEEEecccccccCCCcccccchhhHHHHHHHHHhhc
Confidence 5689999999876665 2355677888888999999999954111 11268999999999999764
No 40
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=95.54 E-value=0.067 Score=39.70 Aligned_cols=68 Identities=13% Similarity=0.089 Sum_probs=43.7
Q ss_pred CCCCCCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCC--CCC----------------chHHHH
Q 042415 55 PPLKQTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPE--HLV----------------AAAYED 116 (151)
Q Consensus 55 P~~~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~--~~~----------------p~~l~D 116 (151)
|++.++.|+||.+|+-. |-. .....++..||.+ |+.|+.+|+--... ... .....|
T Consensus 8 P~~~~~~~~Vvv~~d~~---G~~--~~~~~~ad~lA~~-Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (218)
T PF01738_consen 8 PEGGGPRPAVVVIHDIF---GLN--PNIRDLADRLAEE-GYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPRPEQVAAD 81 (218)
T ss_dssp ETTSSSEEEEEEE-BTT---BS---HHHHHHHHHHHHT-T-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHSHHHHHHH
T ss_pred CCCCCCCCEEEEEcCCC---CCc--hHHHHHHHHHHhc-CCCEEecccccCCCCCccchhhHHHHHHHHHhhhHHHHHHH
Confidence 55546889999999843 333 2456788899887 99999999744322 110 124577
Q ss_pred HHHHHHHHHhhh
Q 042415 117 SWAALKWVASHF 128 (151)
Q Consensus 117 ~~~al~wl~~~~ 128 (151)
+.+++.|++++.
T Consensus 82 ~~aa~~~l~~~~ 93 (218)
T PF01738_consen 82 LQAAVDYLRAQP 93 (218)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHHHhcc
Confidence 778899998876
No 41
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=95.40 E-value=0.09 Score=43.16 Aligned_cols=67 Identities=19% Similarity=0.189 Sum_probs=46.3
Q ss_pred CCCCCCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCC---CC-----CCCchHHHHHHHHHHHHHh
Q 042415 55 PPLKQTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLA---PE-----HLVAAAYEDSWAALKWVAS 126 (151)
Q Consensus 55 P~~~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla---p~-----~~~p~~l~D~~~al~wl~~ 126 (151)
|...+..++||++||.+ ++.. .+..++..|+.+ |+.|+.+|||=- +. ..+....+|+..+++++..
T Consensus 130 p~~~~~~~~Vl~lHG~~---~~~~--~~~~~a~~L~~~-Gy~V~~~D~rGhG~S~~~~~~~~~~~~~~~Dl~~~l~~l~~ 203 (395)
T PLN02652 130 PAAGEMRGILIIIHGLN---EHSG--RYLHFAKQLTSC-GFGVYAMDWIGHGGSDGLHGYVPSLDYVVEDTEAFLEKIRS 203 (395)
T ss_pred CCCCCCceEEEEECCch---HHHH--HHHHHHHHHHHC-CCEEEEeCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 44445678999999965 2222 356677888766 999999999832 11 1233457888888888875
Q ss_pred h
Q 042415 127 H 127 (151)
Q Consensus 127 ~ 127 (151)
.
T Consensus 204 ~ 204 (395)
T PLN02652 204 E 204 (395)
T ss_pred h
Confidence 4
No 42
>PLN02511 hydrolase
Probab=95.22 E-value=0.11 Score=42.44 Aligned_cols=65 Identities=18% Similarity=0.084 Sum_probs=42.3
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCCC-------CchHHHHHHHHHHHHHhh
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEHL-------VAAAYEDSWAALKWVASH 127 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~~-------~p~~l~D~~~al~wl~~~ 127 (151)
...|+||++||.+ |+........++..+..+ |+.|+.+|||=--..+ .....+|+..+++++...
T Consensus 98 ~~~p~vvllHG~~---g~s~~~y~~~~~~~~~~~-g~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~i~~l~~~ 169 (388)
T PLN02511 98 ADAPVLILLPGLT---GGSDDSYVRHMLLRARSK-GWRVVVFNSRGCADSPVTTPQFYSASFTGDLRQVVDHVAGR 169 (388)
T ss_pred CCCCEEEEECCCC---CCCCCHHHHHHHHHHHHC-CCEEEEEecCCCCCCCCCCcCEEcCCchHHHHHHHHHHHHH
Confidence 4578999999964 333221123344455444 9999999999532211 124588999999998874
No 43
>PHA02857 monoglyceride lipase; Provisional
Probab=95.11 E-value=0.12 Score=39.40 Aligned_cols=62 Identities=19% Similarity=0.162 Sum_probs=42.9
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCC---CCC-----CCchHHHHHHHHHHHHHh
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLA---PEH-----LVAAAYEDSWAALKWVAS 126 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla---p~~-----~~p~~l~D~~~al~wl~~ 126 (151)
.+.++|+++||.+- +.. .+..++..|+.+ |+.|+++|+|=- +.. .+-..++|+..++.++++
T Consensus 23 ~~~~~v~llHG~~~---~~~--~~~~~~~~l~~~-g~~via~D~~G~G~S~~~~~~~~~~~~~~~d~~~~l~~~~~ 92 (276)
T PHA02857 23 YPKALVFISHGAGE---HSG--RYEELAENISSL-GILVFSHDHIGHGRSNGEKMMIDDFGVYVRDVVQHVVTIKS 92 (276)
T ss_pred CCCEEEEEeCCCcc---ccc--hHHHHHHHHHhC-CCEEEEccCCCCCCCCCccCCcCCHHHHHHHHHHHHHHHHh
Confidence 35589999999652 222 467778888776 999999999932 211 233457888888887764
No 44
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=94.98 E-value=0.13 Score=37.20 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=27.4
Q ss_pred eEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCC
Q 042415 62 SSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLA 105 (151)
Q Consensus 62 Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla 105 (151)
|+||++||.+ ++.. .+..++..|+ + ++.|+.+|+|-.
T Consensus 2 ~~vv~~hG~~---~~~~--~~~~~~~~L~-~-~~~v~~~d~~g~ 38 (251)
T TIGR03695 2 PVLVFLHGFL---GSGA--DWQALIELLG-P-HFRCLAIDLPGH 38 (251)
T ss_pred CEEEEEcCCC---Cchh--hHHHHHHHhc-c-cCeEEEEcCCCC
Confidence 7899999965 3333 4667777776 4 899999998843
No 45
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=94.96 E-value=0.046 Score=43.73 Aligned_cols=40 Identities=28% Similarity=0.476 Sum_probs=34.6
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCC
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRL 104 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 104 (151)
.+.|++||-||=| |+.. .|..+|..||+. |++|.+++-|=
T Consensus 116 ~k~PvvvFSHGLg---gsRt--~YSa~c~~LASh-G~VVaavEHRD 155 (399)
T KOG3847|consen 116 DKYPVVVFSHGLG---GSRT--LYSAYCTSLASH-GFVVAAVEHRD 155 (399)
T ss_pred CCccEEEEecccc---cchh--hHHHHhhhHhhC-ceEEEEeeccc
Confidence 7899999999944 6665 688999999998 99999999774
No 46
>PRK10673 acyl-CoA esterase; Provisional
Probab=94.83 E-value=0.11 Score=38.74 Aligned_cols=63 Identities=19% Similarity=0.133 Sum_probs=41.9
Q ss_pred CCCCCCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCC------CCCCCchHHHHHHHHHHHH
Q 042415 55 PPLKQTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLA------PEHLVAAAYEDSWAALKWV 124 (151)
Q Consensus 55 P~~~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla------p~~~~p~~l~D~~~al~wl 124 (151)
|++....|.||++||.+ ++.. .+..++..|+. ++.|+.+|.|-- +...+....+|+.+.+.++
T Consensus 10 ~~~~~~~~~iv~lhG~~---~~~~--~~~~~~~~l~~--~~~vi~~D~~G~G~s~~~~~~~~~~~~~d~~~~l~~l 78 (255)
T PRK10673 10 AQNPHNNSPIVLVHGLF---GSLD--NLGVLARDLVN--DHDIIQVDMRNHGLSPRDPVMNYPAMAQDLLDTLDAL 78 (255)
T ss_pred CCCCCCCCCEEEECCCC---Cchh--HHHHHHHHHhh--CCeEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHc
Confidence 44445678999999964 3333 45666677754 689999999853 2234556667777766654
No 47
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.096 Score=46.58 Aligned_cols=78 Identities=17% Similarity=0.013 Sum_probs=53.1
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCC-----------CCchHHHHHHHHHHHHHhh
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEH-----------LVAAAYEDSWAALKWVASH 127 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~-----------~~p~~l~D~~~al~wl~~~ 127 (151)
++.|+++.+|||-- .........-.+...++...|++|+.+|||=++.. -.-.-+.|+..|.+++.++
T Consensus 524 ~kyPllv~~yGGP~-sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~ 602 (755)
T KOG2100|consen 524 KKYPLLVVVYGGPG-SQSVTSKFSVDWNEVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKL 602 (755)
T ss_pred CCCCEEEEecCCCC-cceeeeeEEecHHHHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhc
Confidence 78999999999984 11111111123344577788999999999976422 1124688999999998887
Q ss_pred hcccCCCCCccccCCCCCCceee
Q 042415 128 FKISAHGYETWLNTRANFTCVFT 150 (151)
Q Consensus 128 ~~~~~~ggd~~~~~~~D~~rv~l 150 (151)
- .+|.+||-|
T Consensus 603 ~-------------~iD~~ri~i 612 (755)
T KOG2100|consen 603 P-------------FIDRSRVAI 612 (755)
T ss_pred c-------------cccHHHeEE
Confidence 4 377777654
No 48
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=94.62 E-value=0.066 Score=33.89 Aligned_cols=43 Identities=26% Similarity=0.301 Sum_probs=33.6
Q ss_pred CCCCCCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCC
Q 042415 55 PPLKQTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRL 104 (151)
Q Consensus 55 P~~~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 104 (151)
|+.. .+.+|+++||=+=.++ .|..++..|+.. |+.|+..|+|=
T Consensus 11 p~~~-~k~~v~i~HG~~eh~~-----ry~~~a~~L~~~-G~~V~~~D~rG 53 (79)
T PF12146_consen 11 PENP-PKAVVVIVHGFGEHSG-----RYAHLAEFLAEQ-GYAVFAYDHRG 53 (79)
T ss_pred CCCC-CCEEEEEeCCcHHHHH-----HHHHHHHHHHhC-CCEEEEECCCc
Confidence 4443 6889999999764333 477888899887 99999999993
No 49
>PRK11460 putative hydrolase; Provisional
Probab=94.12 E-value=0.29 Score=36.97 Aligned_cols=38 Identities=21% Similarity=0.400 Sum_probs=24.9
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcC-CcEEEEEc
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKA-NVIVVSID 101 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~-g~~vv~v~ 101 (151)
+..|+||++||-| ++.. .+..++..++... .+.+++++
T Consensus 14 ~~~~~vIlLHG~G---~~~~--~~~~l~~~l~~~~~~~~~i~~~ 52 (232)
T PRK11460 14 PAQQLLLLFHGVG---DNPV--AMGEIGSWFAPAFPDALVVSVG 52 (232)
T ss_pred CCCcEEEEEeCCC---CChH--HHHHHHHHHHHHCCCCEEECCC
Confidence 5678999999977 4443 3556667776552 35566555
No 50
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=93.95 E-value=0.021 Score=20.49 Aligned_cols=6 Identities=67% Similarity=1.104 Sum_probs=5.0
Q ss_pred eCCccc
Q 042415 68 HGGGLF 73 (151)
Q Consensus 68 HGGg~~ 73 (151)
|||+|-
T Consensus 2 hgG~Wg 7 (8)
T PF03991_consen 2 HGGGWG 7 (8)
T ss_pred CCCcCC
Confidence 899984
No 51
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=93.60 E-value=0.48 Score=33.66 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=35.7
Q ss_pred EEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCCC-----CchHHHHHHHHHHHHHhhh
Q 042415 64 LFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEHL-----VAAAYEDSWAALKWVASHF 128 (151)
Q Consensus 64 vv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~~-----~p~~l~D~~~al~wl~~~~ 128 (151)
||++||.+- +.. .+..++..|+ + |+.|+.+|+|=-.... -+..+++....+..+.+++
T Consensus 1 vv~~hG~~~---~~~--~~~~~~~~l~-~-~~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~ 63 (228)
T PF12697_consen 1 VVFLHGFGG---SSE--SWDPLAEALA-R-GYRVIAFDLPGHGRSDPPPDYSPYSIEDYAEDLAELLDAL 63 (228)
T ss_dssp EEEE-STTT---TGG--GGHHHHHHHH-T-TSEEEEEECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHHT
T ss_pred eEEECCCCC---CHH--HHHHHHHHHh-C-CCEEEEEecCCccccccccccCCcchhhhhhhhhhccccc
Confidence 799999873 332 4677788884 4 9999999999432221 1344555555555544444
No 52
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=93.57 E-value=0.33 Score=37.17 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=47.0
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCC---CCCCCchH-HHHHHHHHHHHHhhhc
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLA---PEHLVAAA-YEDSWAALKWVASHFK 129 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla---p~~~~p~~-l~D~~~al~wl~~~~~ 129 (151)
...|+++|||+-+=-+|..- +.++-+-..+++.|+.++||=- ...+-..+ .-|..+|+.++..+-.
T Consensus 76 ~S~pTlLyfh~NAGNmGhr~-----~i~~~fy~~l~mnv~ivsYRGYG~S~GspsE~GL~lDs~avldyl~t~~~ 145 (300)
T KOG4391|consen 76 SSRPTLLYFHANAGNMGHRL-----PIARVFYVNLKMNVLIVSYRGYGKSEGSPSEEGLKLDSEAVLDYLMTRPD 145 (300)
T ss_pred CCCceEEEEccCCCcccchh-----hHHHHHHHHcCceEEEEEeeccccCCCCccccceeccHHHHHHHHhcCcc
Confidence 58899999999874444432 3456666778999999999943 22232333 5699999999987654
No 53
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=93.47 E-value=0.13 Score=41.25 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=35.6
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhc--CCcEEEEEcCCCCCCCCCchHHHHHH
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAK--ANVIVVSIDYRLAPEHLVAAAYEDSW 118 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~--~g~~vv~v~YRlap~~~~p~~l~D~~ 118 (151)
..+|++|++|| |............+...+... .++.|+.|||.-.-...|..+.....
T Consensus 69 ~~~pt~iiiHG--w~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~~Y~~a~~n~~ 128 (331)
T PF00151_consen 69 PSKPTVIIIHG--WTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGASNNYPQAVANTR 128 (331)
T ss_dssp TTSEEEEEE----TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS-HHHHHHHHH
T ss_pred CCCCeEEEEcC--cCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhccccccchhhhHH
Confidence 68899999999 765552333455566666666 58999999999765556766655443
No 54
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=93.40 E-value=0.53 Score=35.04 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=26.7
Q ss_pred CceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCC
Q 042415 60 TKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRL 104 (151)
Q Consensus 60 ~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 104 (151)
..|.||++|||+. +.. .+......++.+.|+.|+.+|+|=
T Consensus 24 ~~~~vl~~hG~~g---~~~--~~~~~~~~~l~~~g~~vi~~d~~G 63 (288)
T TIGR01250 24 EKIKLLLLHGGPG---MSH--EYLENLRELLKEEGREVIMYDQLG 63 (288)
T ss_pred CCCeEEEEcCCCC---ccH--HHHHHHHHHHHhcCCEEEEEcCCC
Confidence 3578899999752 222 234444555555599999999984
No 55
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=92.80 E-value=0.44 Score=36.80 Aligned_cols=45 Identities=20% Similarity=0.429 Sum_probs=37.1
Q ss_pred eEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCC
Q 042415 62 SSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEH 108 (151)
Q Consensus 62 Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~ 108 (151)
-.||+|-||+|+.-... -+|..+++.|+.+ |++|++.-|..+=.|
T Consensus 17 ~gvihFiGGaf~ga~P~-itYr~lLe~La~~-Gy~ViAtPy~~tfDH 61 (250)
T PF07082_consen 17 KGVIHFIGGAFVGAAPQ-ITYRYLLERLADR-GYAVIATPYVVTFDH 61 (250)
T ss_pred CEEEEEcCcceeccCcH-HHHHHHHHHHHhC-CcEEEEEecCCCCcH
Confidence 37899999999865544 5899999999987 999999999876444
No 56
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=92.57 E-value=0.85 Score=35.22 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=29.0
Q ss_pred CceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCC
Q 042415 60 TKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRL 104 (151)
Q Consensus 60 ~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 104 (151)
..|.||++||.+. +.. .+..++..|..+ |+.|+.+++|-
T Consensus 17 ~~p~vvliHG~~~---~~~--~w~~~~~~L~~~-g~~vi~~dl~g 55 (273)
T PLN02211 17 QPPHFVLIHGISG---GSW--CWYKIRCLMENS-GYKVTCIDLKS 55 (273)
T ss_pred CCCeEEEECCCCC---CcC--cHHHHHHHHHhC-CCEEEEecccC
Confidence 5688999999663 222 356666777665 99999999985
No 57
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=92.54 E-value=0.55 Score=34.44 Aligned_cols=39 Identities=23% Similarity=0.242 Sum_probs=26.5
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCC
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRL 104 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 104 (151)
.+.|+||++||.+ ++.. .+...+..+. + ++.|+.+|+|=
T Consensus 11 ~~~~~iv~lhG~~---~~~~--~~~~~~~~l~-~-~~~vi~~D~~G 49 (257)
T TIGR03611 11 ADAPVVVLSSGLG---GSGS--YWAPQLDVLT-Q-RFHVVTYDHRG 49 (257)
T ss_pred CCCCEEEEEcCCC---cchh--HHHHHHHHHH-h-ccEEEEEcCCC
Confidence 3568999999976 3332 2444554444 3 79999999983
No 58
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=92.46 E-value=0.35 Score=37.23 Aligned_cols=71 Identities=13% Similarity=0.059 Sum_probs=43.1
Q ss_pred CCCCCceEEEEEeCCccccCCCCCc-chHH----HHHHHHhcCCcEEEEEcCCCC--CCC---C-CchHHHHHHHHHHHH
Q 042415 56 PLKQTKSSLFYYHGGGLFMGSPFCS-TYHN----YIGSLSAKANVIVVSIDYRLA--PEH---L-VAAAYEDSWAALKWV 124 (151)
Q Consensus 56 ~~~~~~Pvvv~iHGGg~~~g~~~~~-~~~~----~~~~la~~~g~~vv~v~YRla--p~~---~-~p~~l~D~~~al~wl 124 (151)
...++.|+||..|+=|--....... .... ....++++ ||+||.+|-|=. .+. . .+...+|..+++.|+
T Consensus 15 ~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~-GY~vV~~D~RG~g~S~G~~~~~~~~e~~D~~d~I~W~ 93 (272)
T PF02129_consen 15 DGGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAER-GYAVVVQDVRGTGGSEGEFDPMSPNEAQDGYDTIEWI 93 (272)
T ss_dssp TTSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHT-T-EEEEEE-TTSTTS-S-B-TTSHHHHHHHHHHHHHH
T ss_pred CCCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhC-CCEEEEECCcccccCCCccccCChhHHHHHHHHHHHH
Confidence 4458999999999866211000000 0000 00126665 999999999854 121 2 778999999999999
Q ss_pred Hhh
Q 042415 125 ASH 127 (151)
Q Consensus 125 ~~~ 127 (151)
.++
T Consensus 94 ~~Q 96 (272)
T PF02129_consen 94 AAQ 96 (272)
T ss_dssp HHC
T ss_pred HhC
Confidence 987
No 59
>COG1647 Esterase/lipase [General function prediction only]
Probab=92.41 E-value=0.68 Score=35.37 Aligned_cols=86 Identities=15% Similarity=0.039 Sum_probs=58.9
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCC---CCCC----CCchHHHHHHHHHHHHHhhhcc-
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRL---APEH----LVAAAYEDSWAALKWVASHFKI- 130 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl---ap~~----~~p~~l~D~~~al~wl~~~~~~- 130 (151)
+....|+.+|| |. |+..+ ...+.+.|... |+.|..++|+= .||. ..-.=++|+.++++.|.+.+-+
T Consensus 13 ~G~~AVLllHG--FT-Gt~~D--vr~Lgr~L~e~-GyTv~aP~ypGHG~~~e~fl~t~~~DW~~~v~d~Y~~L~~~gy~e 86 (243)
T COG1647 13 GGNRAVLLLHG--FT-GTPRD--VRMLGRYLNEN-GYTVYAPRYPGHGTLPEDFLKTTPRDWWEDVEDGYRDLKEAGYDE 86 (243)
T ss_pred cCCEEEEEEec--cC-CCcHH--HHHHHHHHHHC-CceEecCCCCCCCCCHHHHhcCCHHHHHHHHHHHHHHHHHcCCCe
Confidence 34589999999 44 66542 34455666655 99999999982 1221 2234578899999999966443
Q ss_pred -----cCCCCC--ccccCCCCCCceee
Q 042415 131 -----SAHGYE--TWLNTRANFTCVFT 150 (151)
Q Consensus 131 -----~~~ggd--~~~~~~~D~~rv~l 150 (151)
=++||. -|++++..+.+|+.
T Consensus 87 I~v~GlSmGGv~alkla~~~p~K~iv~ 113 (243)
T COG1647 87 IAVVGLSMGGVFALKLAYHYPPKKIVP 113 (243)
T ss_pred EEEEeecchhHHHHHHHhhCCccceee
Confidence 125776 48888888888874
No 60
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=92.41 E-value=1.2 Score=37.21 Aligned_cols=67 Identities=13% Similarity=0.219 Sum_probs=36.9
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhc-CCcEEEEEcCCCCCCCCCchH-------HHHHHHHHHHHHhh
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAK-ANVIVVSIDYRLAPEHLVAAA-------YEDSWAALKWVASH 127 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~-~g~~vv~v~YRlap~~~~p~~-------l~D~~~al~wl~~~ 127 (151)
...|.+|++||-+- .+... .....++..+..+ ..+.|+++|++-.-...++.+ -.++...++++.++
T Consensus 39 ~~~ptvIlIHG~~~-s~~~~-~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~y~~a~~~t~~vg~~la~lI~~L~~~ 113 (442)
T TIGR03230 39 HETKTFIVIHGWTV-TGMFE-SWVPKLVAALYEREPSANVIVVDWLSRAQQHYPTSAAYTKLVGKDVAKFVNWMQEE 113 (442)
T ss_pred CCCCeEEEECCCCc-CCcch-hhHHHHHHHHHhccCCCEEEEEECCCcCCCCCccccccHHHHHHHHHHHHHHHHHh
Confidence 46789999999552 12111 1122344444433 369999999985434444432 23445556666543
No 61
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=92.30 E-value=0.48 Score=34.37 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=26.3
Q ss_pred CceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCC
Q 042415 60 TKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRL 104 (151)
Q Consensus 60 ~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 104 (151)
..|+||++||-|- +.. .+..++..|. + ++.|+.+|+|=
T Consensus 12 ~~~~li~~hg~~~---~~~--~~~~~~~~l~-~-~~~v~~~d~~G 49 (251)
T TIGR02427 12 GAPVLVFINSLGT---DLR--MWDPVLPALT-P-DFRVLRYDKRG 49 (251)
T ss_pred CCCeEEEEcCccc---chh--hHHHHHHHhh-c-ccEEEEecCCC
Confidence 5689999998652 222 3455665554 3 89999999974
No 62
>PRK00870 haloalkane dehalogenase; Provisional
Probab=92.24 E-value=0.7 Score=35.81 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=27.9
Q ss_pred ceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCC
Q 042415 61 KSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRL 104 (151)
Q Consensus 61 ~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 104 (151)
.|.||++||.+ ++.. .+..++..|+.. |+.|+++|.|=
T Consensus 46 ~~~lvliHG~~---~~~~--~w~~~~~~L~~~-gy~vi~~Dl~G 83 (302)
T PRK00870 46 GPPVLLLHGEP---SWSY--LYRKMIPILAAA-GHRVIAPDLIG 83 (302)
T ss_pred CCEEEEECCCC---Cchh--hHHHHHHHHHhC-CCEEEEECCCC
Confidence 57899999964 2222 456677777655 99999999984
No 63
>PLN02442 S-formylglutathione hydrolase
Probab=91.85 E-value=0.24 Score=38.58 Aligned_cols=42 Identities=12% Similarity=0.040 Sum_probs=26.2
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCC
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYR 103 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YR 103 (151)
++.|+|+++||++ ++........-+..++...|+.||.++..
T Consensus 45 ~~~Pvv~~lHG~~---~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~ 86 (283)
T PLN02442 45 GKVPVLYWLSGLT---CTDENFIQKSGAQRAAAARGIALVAPDTS 86 (283)
T ss_pred CCCCEEEEecCCC---cChHHHHHhhhHHHHHhhcCeEEEecCCC
Confidence 5789999999866 33221011111234555569999999864
No 64
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=91.61 E-value=0.93 Score=33.97 Aligned_cols=61 Identities=16% Similarity=0.160 Sum_probs=36.9
Q ss_pred CceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCC----CCchHHHHHHHHHHHHHhh
Q 042415 60 TKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEH----LVAAAYEDSWAALKWVASH 127 (151)
Q Consensus 60 ~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~----~~p~~l~D~~~al~wl~~~ 127 (151)
..|+||++||.+ ++.. .+...+..|+. ++.|+.+|+|=-.+. ..+..+++..+.+..+.++
T Consensus 27 ~~~~vv~~hG~~---~~~~--~~~~~~~~l~~--~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l~~~i~~ 91 (278)
T TIGR03056 27 AGPLLLLLHGTG---ASTH--SWRDLMPPLAR--SFRVVAPDLPGHGFTRAPFRFRFTLPSMAEDLSALCAA 91 (278)
T ss_pred CCCeEEEEcCCC---CCHH--HHHHHHHHHhh--CcEEEeecCCCCCCCCCccccCCCHHHHHHHHHHHHHH
Confidence 358899999965 3332 35666667654 699999999933211 1123455555555554443
No 65
>PRK03204 haloalkane dehalogenase; Provisional
Probab=91.47 E-value=0.95 Score=35.03 Aligned_cols=61 Identities=15% Similarity=0.121 Sum_probs=39.1
Q ss_pred ceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCC----CCchHHHHHHHHHHHHHhhh
Q 042415 61 KSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEH----LVAAAYEDSWAALKWVASHF 128 (151)
Q Consensus 61 ~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~----~~p~~l~D~~~al~wl~~~~ 128 (151)
.|.||++||.+ .+. ..+..++..|.. ++.|+.+|+|---.. .+...+++..+.+.++.++.
T Consensus 34 ~~~iv~lHG~~---~~~--~~~~~~~~~l~~--~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~ 98 (286)
T PRK03204 34 GPPILLCHGNP---TWS--FLYRDIIVALRD--RFRCVAPDYLGFGLSERPSGFGYQIDEHARVIGEFVDHL 98 (286)
T ss_pred CCEEEEECCCC---ccH--HHHHHHHHHHhC--CcEEEEECCCCCCCCCCCCccccCHHHHHHHHHHHHHHh
Confidence 47899999975 121 134455555543 699999999953222 22345778888888777654
No 66
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=91.43 E-value=0.73 Score=36.50 Aligned_cols=62 Identities=18% Similarity=0.145 Sum_probs=35.9
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCC---CCchHHHHHHHHHHHHHhh
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEH---LVAAAYEDSWAALKWVASH 127 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~---~~p~~l~D~~~al~wl~~~ 127 (151)
+..|.||++||.+ ++.. .+......|.. ++.|+.+|+|-.... .-...+++..+.+..+.++
T Consensus 129 ~~~~~vl~~HG~~---~~~~--~~~~~~~~l~~--~~~v~~~d~~g~G~s~~~~~~~~~~~~~~~~~~~~~~ 193 (371)
T PRK14875 129 GDGTPVVLIHGFG---GDLN--NWLFNHAALAA--GRPVIALDLPGHGASSKAVGAGSLDELAAAVLAFLDA 193 (371)
T ss_pred CCCCeEEEECCCC---Cccc--hHHHHHHHHhc--CCEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 3457899999854 3333 34555566654 499999999854222 1223455555555444433
No 67
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=90.91 E-value=0.91 Score=33.55 Aligned_cols=36 Identities=19% Similarity=0.038 Sum_probs=25.5
Q ss_pred ceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCC
Q 042415 61 KSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRL 104 (151)
Q Consensus 61 ~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 104 (151)
.|.||++||.+. +.. .+...+..+ + ++.|+++|+|=
T Consensus 2 ~p~vvllHG~~~---~~~--~w~~~~~~l--~-~~~vi~~D~~G 37 (242)
T PRK11126 2 LPWLVFLHGLLG---SGQ--DWQPVGEAL--P-DYPRLYIDLPG 37 (242)
T ss_pred CCEEEEECCCCC---ChH--HHHHHHHHc--C-CCCEEEecCCC
Confidence 478999999863 322 355555555 3 79999999983
No 68
>PRK10749 lysophospholipase L2; Provisional
Probab=90.47 E-value=2.2 Score=33.78 Aligned_cols=38 Identities=21% Similarity=0.092 Sum_probs=28.2
Q ss_pred CceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCC
Q 042415 60 TKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYR 103 (151)
Q Consensus 60 ~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YR 103 (151)
+.++||++||-+ ++.. .|..++..++.+ |+.|+.+|+|
T Consensus 53 ~~~~vll~HG~~---~~~~--~y~~~~~~l~~~-g~~v~~~D~~ 90 (330)
T PRK10749 53 HDRVVVICPGRI---ESYV--KYAELAYDLFHL-GYDVLIIDHR 90 (330)
T ss_pred CCcEEEEECCcc---chHH--HHHHHHHHHHHC-CCeEEEEcCC
Confidence 456899999953 3322 466677777765 9999999999
No 69
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=89.23 E-value=1 Score=36.91 Aligned_cols=39 Identities=21% Similarity=0.195 Sum_probs=27.6
Q ss_pred CceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCC
Q 042415 60 TKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLA 105 (151)
Q Consensus 60 ~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla 105 (151)
..|+||++||.|.. .. .+...+..|+. ++.|+.+|+|--
T Consensus 104 ~~p~vvllHG~~~~---~~--~~~~~~~~L~~--~~~vi~~D~rG~ 142 (402)
T PLN02894 104 DAPTLVMVHGYGAS---QG--FFFRNFDALAS--RFRVIAIDQLGW 142 (402)
T ss_pred CCCEEEEECCCCcc---hh--HHHHHHHHHHh--CCEEEEECCCCC
Confidence 45899999998742 22 24455566654 699999999954
No 70
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=89.00 E-value=2 Score=34.69 Aligned_cols=65 Identities=23% Similarity=0.386 Sum_probs=43.8
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCC-------CCCCCchHHHHHHHHHHHHHhh
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLA-------PEHLVAAAYEDSWAALKWVASH 127 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla-------p~~~~p~~l~D~~~al~wl~~~ 127 (151)
.+.|.+|-+|| ..|+..+.-...+.+.+.++ |+.||..+.|=. |.--.---.+|+...+.|+++.
T Consensus 73 ~~~P~vVl~HG---L~G~s~s~y~r~L~~~~~~r-g~~~Vv~~~Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l~~~ 144 (345)
T COG0429 73 AKKPLVVLFHG---LEGSSNSPYARGLMRALSRR-GWLVVVFHFRGCSGEANTSPRLYHSGETEDIRFFLDWLKAR 144 (345)
T ss_pred cCCceEEEEec---cCCCCcCHHHHHHHHHHHhc-CCeEEEEecccccCCcccCcceecccchhHHHHHHHHHHHh
Confidence 56699999999 55666553333444555555 999999999954 1111122358999999999874
No 71
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=88.89 E-value=0.83 Score=36.21 Aligned_cols=62 Identities=24% Similarity=0.254 Sum_probs=46.2
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCCCC--------chHHHHHHHHHHHHH
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEHLV--------AAAYEDSWAALKWVA 125 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~~~--------p~~l~D~~~al~wl~ 125 (151)
+..|++++.||||+-.-+ +..++..+..+....++++|-|=--+.++ -....|+.+.++.+-
T Consensus 72 t~gpil~l~HG~G~S~LS-----fA~~a~el~s~~~~r~~a~DlRgHGeTk~~~e~dlS~eT~~KD~~~~i~~~f 141 (343)
T KOG2564|consen 72 TEGPILLLLHGGGSSALS-----FAIFASELKSKIRCRCLALDLRGHGETKVENEDDLSLETMSKDFGAVIKELF 141 (343)
T ss_pred CCccEEEEeecCcccchh-----HHHHHHHHHhhcceeEEEeeccccCccccCChhhcCHHHHHHHHHHHHHHHh
Confidence 578999999999975444 56688899999899999999995433332 356777777666554
No 72
>PLN02872 triacylglycerol lipase
Probab=88.53 E-value=0.97 Score=37.21 Aligned_cols=68 Identities=18% Similarity=-0.013 Sum_probs=40.3
Q ss_pred CCceEEEEEeCCccccCCCCC-cchHHHHHHHHhcCCcEEEEEcCCCCC----------CC------CCc-hHHHHHHHH
Q 042415 59 QTKSSLFYYHGGGLFMGSPFC-STYHNYIGSLSAKANVIVVSIDYRLAP----------EH------LVA-AAYEDSWAA 120 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~-~~~~~~~~~la~~~g~~vv~v~YRlap----------~~------~~p-~~l~D~~~a 120 (151)
.+.|+|+++||.+.-...-.. .....+...|+.+ |+.|+.+|.|=.. .. .+. .+..|+.++
T Consensus 72 ~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~-GydV~l~n~RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~ 150 (395)
T PLN02872 72 QRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADH-GFDVWVGNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEM 150 (395)
T ss_pred CCCCeEEEeCcccccccceeecCcccchHHHHHhC-CCCcccccccccccccCCCCCCccchhccCCcHHHHHHHHHHHH
Confidence 346889999997532221100 0012334456655 9999999988531 11 111 235799999
Q ss_pred HHHHHhh
Q 042415 121 LKWVASH 127 (151)
Q Consensus 121 l~wl~~~ 127 (151)
++++.+.
T Consensus 151 id~i~~~ 157 (395)
T PLN02872 151 IHYVYSI 157 (395)
T ss_pred HHHHHhc
Confidence 9998753
No 73
>PLN02965 Probable pheophorbidase
Probab=88.24 E-value=4 Score=30.71 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=27.4
Q ss_pred eEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCC
Q 042415 62 SSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLA 105 (151)
Q Consensus 62 Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla 105 (151)
-.||++||.+ ++.. .+...+..|+.. ++.|+.+|+|=-
T Consensus 4 ~~vvllHG~~---~~~~--~w~~~~~~L~~~-~~~via~Dl~G~ 41 (255)
T PLN02965 4 IHFVFVHGAS---HGAW--CWYKLATLLDAA-GFKSTCVDLTGA 41 (255)
T ss_pred eEEEEECCCC---CCcC--cHHHHHHHHhhC-CceEEEecCCcC
Confidence 3599999987 2332 356666777655 899999999753
No 74
>COG4099 Predicted peptidase [General function prediction only]
Probab=88.15 E-value=0.82 Score=36.58 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=13.7
Q ss_pred CCCC---CCc-eEEEEEeCCcc
Q 042415 55 PPLK---QTK-SSLFYYHGGGL 72 (151)
Q Consensus 55 P~~~---~~~-Pvvv~iHGGg~ 72 (151)
|+.- ++. |.+||+||+|=
T Consensus 181 Pkdy~pdkky~PLvlfLHgagq 202 (387)
T COG4099 181 PKDYAPDKKYYPLVLFLHGAGQ 202 (387)
T ss_pred ccccCCCCccccEEEEEecCCC
Confidence 6543 444 99999999994
No 75
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=87.21 E-value=0.9 Score=34.40 Aligned_cols=42 Identities=24% Similarity=0.242 Sum_probs=24.9
Q ss_pred ceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCC
Q 042415 61 KSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLA 105 (151)
Q Consensus 61 ~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla 105 (151)
.|.||++||.+.-...-. .+...+..++.+ |+.|+.+|+|=-
T Consensus 30 ~~~ivllHG~~~~~~~~~--~~~~~~~~l~~~-~~~vi~~D~~G~ 71 (282)
T TIGR03343 30 GEAVIMLHGGGPGAGGWS--NYYRNIGPFVDA-GYRVILKDSPGF 71 (282)
T ss_pred CCeEEEECCCCCchhhHH--HHHHHHHHHHhC-CCEEEEECCCCC
Confidence 367999999652211110 111234455554 899999999843
No 76
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=87.16 E-value=2.3 Score=33.95 Aligned_cols=62 Identities=8% Similarity=0.044 Sum_probs=38.4
Q ss_pred EEEEEeC---CccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCC----CCchHH-HHHHHHHHHHHhhh
Q 042415 63 SLFYYHG---GGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEH----LVAAAY-EDSWAALKWVASHF 128 (151)
Q Consensus 63 vvv~iHG---Gg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~----~~p~~l-~D~~~al~wl~~~~ 128 (151)
.||.+|| .+|+.... ....+++.|+.+ |+.|+.+|||-.... .+..-. .|+.+++.+++++.
T Consensus 64 pvl~v~~~~~~~~~~d~~---~~~~~~~~L~~~-G~~V~~~D~~g~g~s~~~~~~~d~~~~~~~~~v~~l~~~~ 133 (350)
T TIGR01836 64 PLLIVYALVNRPYMLDLQ---EDRSLVRGLLER-GQDVYLIDWGYPDRADRYLTLDDYINGYIDKCVDYICRTS 133 (350)
T ss_pred cEEEeccccccceeccCC---CCchHHHHHHHC-CCeEEEEeCCCCCHHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4788887 34433222 124677788776 999999999854321 111222 34777888888764
No 77
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=87.06 E-value=1 Score=32.55 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=25.5
Q ss_pred ceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCC
Q 042415 61 KSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRL 104 (151)
Q Consensus 61 ~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 104 (151)
.|.||++||.| ++.. .+..+...|+. ++.|+.+|+|=
T Consensus 4 ~~~iv~~HG~~---~~~~--~~~~~~~~l~~--~~~vi~~d~~G 40 (245)
T TIGR01738 4 NVHLVLIHGWG---MNAE--VFRCLDEELSA--HFTLHLVDLPG 40 (245)
T ss_pred CceEEEEcCCC---Cchh--hHHHHHHhhcc--CeEEEEecCCc
Confidence 37899999854 3332 35556666653 69999999983
No 78
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.52 E-value=1.9 Score=34.04 Aligned_cols=58 Identities=17% Similarity=0.083 Sum_probs=40.6
Q ss_pred CCceeeeeEEeCCCCC---------CCCC-CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCC
Q 042415 39 PNVVFSKDVVIVPEKD---------PPLK-QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYR 103 (151)
Q Consensus 39 ~~~~~~~d~~~~~~~~---------P~~~-~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YR 103 (151)
...++.-|+++.+..+ |+.. ++.|.||.+||=+ .+... .+ .+ -.++.. |+.|+..+-|
T Consensus 51 ~~~ve~ydvTf~g~~g~rI~gwlvlP~~~~~~~P~vV~fhGY~--g~~g~--~~-~~-l~wa~~-Gyavf~MdvR 118 (321)
T COG3458 51 LPRVEVYDVTFTGYGGARIKGWLVLPRHEKGKLPAVVQFHGYG--GRGGE--WH-DM-LHWAVA-GYAVFVMDVR 118 (321)
T ss_pred CCceEEEEEEEeccCCceEEEEEEeecccCCccceEEEEeecc--CCCCC--cc-cc-cccccc-ceeEEEEecc
Confidence 3578889999988876 8877 8999999999833 22211 11 11 234554 9999999877
No 79
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=86.44 E-value=5.8 Score=30.38 Aligned_cols=37 Identities=22% Similarity=0.148 Sum_probs=26.3
Q ss_pred ceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCC
Q 042415 61 KSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRL 104 (151)
Q Consensus 61 ~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 104 (151)
.|.||++||.+. +.. .+...+..|+.+ +.|+.+|.|=
T Consensus 29 ~~~vlllHG~~~---~~~--~w~~~~~~L~~~--~~vi~~DlpG 65 (294)
T PLN02824 29 GPALVLVHGFGG---NAD--HWRKNTPVLAKS--HRVYAIDLLG 65 (294)
T ss_pred CCeEEEECCCCC---Chh--HHHHHHHHHHhC--CeEEEEcCCC
Confidence 378999999653 332 456667777754 5999999883
No 80
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=85.96 E-value=3.9 Score=30.23 Aligned_cols=13 Identities=31% Similarity=0.554 Sum_probs=8.6
Q ss_pred CCceEEEEEeCCc
Q 042415 59 QTKSSLFYYHGGG 71 (151)
Q Consensus 59 ~~~Pvvv~iHGGg 71 (151)
+..|+||++||=|
T Consensus 12 ~~~~lvi~LHG~G 24 (216)
T PF02230_consen 12 KAKPLVILLHGYG 24 (216)
T ss_dssp T-SEEEEEE--TT
T ss_pred CCceEEEEECCCC
Confidence 6789999999965
No 81
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=85.83 E-value=13 Score=29.81 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=49.3
Q ss_pred CCCC-CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCC----C----CCchHHHHHHHHHHHHH
Q 042415 55 PPLK-QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPE----H----LVAAAYEDSWAALKWVA 125 (151)
Q Consensus 55 P~~~-~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~----~----~~p~~l~D~~~al~wl~ 125 (151)
|... +++-.|+++||.|=... ..+..++..|+.. |+.|+.+||+=--. + .|-..++||..-+..++
T Consensus 47 p~~~~~pr~lv~~~HG~g~~~s----~~~~~~a~~l~~~-g~~v~a~D~~GhG~SdGl~~yi~~~d~~v~D~~~~~~~i~ 121 (313)
T KOG1455|consen 47 PLSGTEPRGLVFLCHGYGEHSS----WRYQSTAKRLAKS-GFAVYAIDYEGHGRSDGLHAYVPSFDLVVDDVISFFDSIK 121 (313)
T ss_pred cCCCCCCceEEEEEcCCcccch----hhHHHHHHHHHhC-CCeEEEeeccCCCcCCCCcccCCcHHHHHHHHHHHHHHHh
Confidence 6553 78889999999773321 1467788888887 99999999984311 1 35567888877777766
Q ss_pred hhhc
Q 042415 126 SHFK 129 (151)
Q Consensus 126 ~~~~ 129 (151)
.+.+
T Consensus 122 ~~~e 125 (313)
T KOG1455|consen 122 EREE 125 (313)
T ss_pred hccc
Confidence 6654
No 82
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=85.19 E-value=3.1 Score=34.26 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=25.8
Q ss_pred CCCC-CCceEEEEEeCCccc----cCCCC---------CcchHHHHHHHHhcCCcEEEEEcCC
Q 042415 55 PPLK-QTKSSLFYYHGGGLF----MGSPF---------CSTYHNYIGSLSAKANVIVVSIDYR 103 (151)
Q Consensus 55 P~~~-~~~Pvvv~iHGGg~~----~g~~~---------~~~~~~~~~~la~~~g~~vv~v~YR 103 (151)
|++. ++.|+||++||=|-. .|... ......+...||++ |++|+++|-.
T Consensus 108 Pd~~~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~-GYVvla~D~~ 169 (390)
T PF12715_consen 108 PDGAKGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKR-GYVVLAPDAL 169 (390)
T ss_dssp ETT--S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTT-TSEEEEE--T
T ss_pred cCCCCCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhC-CCEEEEEccc
Confidence 8874 899999999875532 12111 00112356788887 9999999954
No 83
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=84.34 E-value=5.3 Score=33.17 Aligned_cols=67 Identities=19% Similarity=0.160 Sum_probs=45.5
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCC------CCCCch-HHHHHHHHHHHHHhhhc
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAP------EHLVAA-AYEDSWAALKWVASHFK 129 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap------~~~~p~-~l~D~~~al~wl~~~~~ 129 (151)
...|+||.+|| ...|+.+ .|-.-+...|.+.|+.+|..|-|=-. ..-|++ -.+|...++.++++.--
T Consensus 123 ~~~P~vvilpG--ltg~S~~--~YVr~lv~~a~~~G~r~VVfN~RG~~g~~LtTpr~f~ag~t~Dl~~~v~~i~~~~P 196 (409)
T KOG1838|consen 123 GTDPIVVILPG--LTGGSHE--SYVRHLVHEAQRKGYRVVVFNHRGLGGSKLTTPRLFTAGWTEDLREVVNHIKKRYP 196 (409)
T ss_pred CCCcEEEEecC--CCCCChh--HHHHHHHHHHHhCCcEEEEECCCCCCCCccCCCceeecCCHHHHHHHHHHHHHhCC
Confidence 57799999999 3334443 23333334456669999999998532 223444 48999999999998744
No 84
>PRK10349 carboxylesterase BioH; Provisional
Probab=84.25 E-value=1.9 Score=32.28 Aligned_cols=37 Identities=19% Similarity=0.162 Sum_probs=25.4
Q ss_pred ceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCC
Q 042415 61 KSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRL 104 (151)
Q Consensus 61 ~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 104 (151)
.|.||++||.| ++.. .+...+..|.. .+.|+.+|+|=
T Consensus 13 ~~~ivllHG~~---~~~~--~w~~~~~~L~~--~~~vi~~Dl~G 49 (256)
T PRK10349 13 NVHLVLLHGWG---LNAE--VWRCIDEELSS--HFTLHLVDLPG 49 (256)
T ss_pred CCeEEEECCCC---CChh--HHHHHHHHHhc--CCEEEEecCCC
Confidence 35699999954 2332 35566666653 59999999984
No 85
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=84.07 E-value=2.2 Score=36.78 Aligned_cols=73 Identities=16% Similarity=0.135 Sum_probs=46.4
Q ss_pred CCCCCCceEEEEEeCCccccCCCCCcchHHHHH---HHHhcCCcEEEEEcCCCC--CCCCC----chHHHHHHHHHHHHH
Q 042415 55 PPLKQTKSSLFYYHGGGLFMGSPFCSTYHNYIG---SLSAKANVIVVSIDYRLA--PEHLV----AAAYEDSWAALKWVA 125 (151)
Q Consensus 55 P~~~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~---~la~~~g~~vv~v~YRla--p~~~~----p~~l~D~~~al~wl~ 125 (151)
|++.++.||++-.+=.-|-...........+.. .+|+. ||+||.+|-|=. .|..| ....+|.++.+.|+.
T Consensus 39 Pa~~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~-GYavV~qDvRG~~~SeG~~~~~~~~E~~Dg~D~I~Wia 117 (563)
T COG2936 39 PAGAGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQ-GYAVVNQDVRGRGGSEGVFDPESSREAEDGYDTIEWLA 117 (563)
T ss_pred cCCCCCCceeEEeeccccccccccCcchhhcccccceeecC-ceEEEEecccccccCCcccceeccccccchhHHHHHHH
Confidence 988899999999993333333111000111222 34555 999999998854 22211 258899999999999
Q ss_pred hhh
Q 042415 126 SHF 128 (151)
Q Consensus 126 ~~~ 128 (151)
++.
T Consensus 118 ~Qp 120 (563)
T COG2936 118 KQP 120 (563)
T ss_pred hCC
Confidence 863
No 86
>PRK03592 haloalkane dehalogenase; Provisional
Probab=83.81 E-value=4.1 Score=31.24 Aligned_cols=37 Identities=19% Similarity=0.348 Sum_probs=26.6
Q ss_pred CceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCC
Q 042415 60 TKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYR 103 (151)
Q Consensus 60 ~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YR 103 (151)
..|.||++||.+ ++.. .+..++..|+.. + .|+++|.|
T Consensus 26 ~g~~vvllHG~~---~~~~--~w~~~~~~L~~~-~-~via~D~~ 62 (295)
T PRK03592 26 EGDPIVFLHGNP---TSSY--LWRNIIPHLAGL-G-RCLAPDLI 62 (295)
T ss_pred CCCEEEEECCCC---CCHH--HHHHHHHHHhhC-C-EEEEEcCC
Confidence 347899999965 3332 456677777765 4 99999987
No 87
>PRK05855 short chain dehydrogenase; Validated
Probab=83.32 E-value=3.3 Score=34.77 Aligned_cols=58 Identities=22% Similarity=0.164 Sum_probs=36.6
Q ss_pred CceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCC---------CCCchHHHHHHHHHHHH
Q 042415 60 TKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPE---------HLVAAAYEDSWAALKWV 124 (151)
Q Consensus 60 ~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~---------~~~p~~l~D~~~al~wl 124 (151)
..|.||++||.+ ++.. .+...+..| .+ ++.|+.+|+|=--. ..+....+|+..+++.+
T Consensus 24 ~~~~ivllHG~~---~~~~--~w~~~~~~L-~~-~~~Vi~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~i~~l 90 (582)
T PRK05855 24 DRPTVVLVHGYP---DNHE--VWDGVAPLL-AD-RFRVVAYDVRGAGRSSAPKRTAAYTLARLADDFAAVIDAV 90 (582)
T ss_pred CCCeEEEEcCCC---chHH--HHHHHHHHh-hc-ceEEEEecCCCCCCCCCCCcccccCHHHHHHHHHHHHHHh
Confidence 357999999986 2222 355666666 33 89999999983211 12345566666666654
No 88
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=83.00 E-value=3.7 Score=31.24 Aligned_cols=57 Identities=14% Similarity=0.171 Sum_probs=33.7
Q ss_pred ceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCC-------CCCchHHHHHHHHHHHH
Q 042415 61 KSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPE-------HLVAAAYEDSWAALKWV 124 (151)
Q Consensus 61 ~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~-------~~~p~~l~D~~~al~wl 124 (151)
.+.||++||-+ ++.. .+..++..|.. ++.|+.+|+|=--. ..+....+|+.+.+..+
T Consensus 25 ~~plvllHG~~---~~~~--~w~~~~~~L~~--~~~vi~~Dl~G~G~S~~~~~~~~~~~~~~~~~~~i~~l 88 (276)
T TIGR02240 25 LTPLLIFNGIG---ANLE--LVFPFIEALDP--DLEVIAFDVPGVGGSSTPRHPYRFPGLAKLAARMLDYL 88 (276)
T ss_pred CCcEEEEeCCC---cchH--HHHHHHHHhcc--CceEEEECCCCCCCCCCCCCcCcHHHHHHHHHHHHHHh
Confidence 36789999943 2332 35566666643 68999999983211 12344455555555554
No 89
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=82.56 E-value=1.8 Score=35.66 Aligned_cols=66 Identities=15% Similarity=0.269 Sum_probs=42.1
Q ss_pred CceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCC-CC-------------chHHHHHHHHHHHHH
Q 042415 60 TKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEH-LV-------------AAAYEDSWAALKWVA 125 (151)
Q Consensus 60 ~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~-~~-------------p~~l~D~~~al~wl~ 125 (151)
+.|++||+=|=| -..... ....+...||++.|+.+|.++-|---+. |+ .++|.|+..-+++++
T Consensus 28 ~gpifl~~ggE~-~~~~~~--~~~~~~~~lA~~~~a~~v~lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~ 104 (434)
T PF05577_consen 28 GGPIFLYIGGEG-PIEPFW--INNGFMWELAKEFGALVVALEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVK 104 (434)
T ss_dssp TSEEEEEE--SS--HHHHH--HH-HHHHHHHHHHTEEEEEE--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCC-ccchhh--hcCChHHHHHHHcCCcEEEeehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHH
Confidence 379988884433 221111 1234778999999999999999964221 22 469999999999998
Q ss_pred hhh
Q 042415 126 SHF 128 (151)
Q Consensus 126 ~~~ 128 (151)
++.
T Consensus 105 ~~~ 107 (434)
T PF05577_consen 105 KKY 107 (434)
T ss_dssp HHT
T ss_pred Hhh
Confidence 654
No 90
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=80.95 E-value=2.6 Score=37.90 Aligned_cols=39 Identities=28% Similarity=0.397 Sum_probs=29.3
Q ss_pred CceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCC
Q 042415 60 TKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRL 104 (151)
Q Consensus 60 ~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 104 (151)
..|+||++||=+ +... .+..++..|+.+ |+.|+.+|||.
T Consensus 448 g~P~VVllHG~~---g~~~--~~~~lA~~La~~-Gy~VIaiDlpG 486 (792)
T TIGR03502 448 GWPVVIYQHGIT---GAKE--NALAFAGTLAAA-GVATIAIDHPL 486 (792)
T ss_pred CCcEEEEeCCCC---CCHH--HHHHHHHHHHhC-CcEEEEeCCCC
Confidence 468999999944 3333 356777788766 99999999964
No 91
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=78.63 E-value=21 Score=29.60 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=27.0
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCC---cEEEEEcC
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKAN---VIVVSIDY 102 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g---~~vv~v~Y 102 (151)
++.|||+++||+.|..... ....+..+..+.. +++|.++-
T Consensus 207 ~~~PvlyllDG~~w~~~~~----~~~~ld~li~~g~i~P~ivV~id~ 249 (411)
T PRK10439 207 EERPLAILLDGQFWAESMP----VWPALDSLTHRGQLPPAVYLLIDA 249 (411)
T ss_pred CCCCEEEEEECHHhhhcCC----HHHHHHHHHHcCCCCceEEEEECC
Confidence 6789999999999864322 3445556665522 56788874
No 92
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=78.44 E-value=11 Score=30.78 Aligned_cols=38 Identities=21% Similarity=0.367 Sum_probs=26.9
Q ss_pred CceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCC
Q 042415 60 TKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRL 104 (151)
Q Consensus 60 ~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 104 (151)
..|.||++||.+. +.. .+...+..|+ + ++.|+.+|++=
T Consensus 126 ~~~~ivllHG~~~---~~~--~w~~~~~~L~-~-~~~Via~DlpG 163 (383)
T PLN03084 126 NNPPVLLIHGFPS---QAY--SYRKVLPVLS-K-NYHAIAFDWLG 163 (383)
T ss_pred CCCeEEEECCCCC---CHH--HHHHHHHHHh-c-CCEEEEECCCC
Confidence 4578999999762 222 3566666665 3 79999999983
No 93
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=77.95 E-value=6.5 Score=31.52 Aligned_cols=67 Identities=24% Similarity=0.244 Sum_probs=52.8
Q ss_pred CCCCCCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCC---CC---CCCchHHHHHHHHHHHHHh
Q 042415 55 PPLKQTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLA---PE---HLVAAAYEDSWAALKWVAS 126 (151)
Q Consensus 55 P~~~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla---p~---~~~p~~l~D~~~al~wl~~ 126 (151)
..+.++.|.++.+|| ..|++. .+..+.+.|+.+.+..|+++|-|-= |. +.+-++.+|+..-+.++..
T Consensus 46 ~~~~~~~Pp~i~lHG---l~GS~~--Nw~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~~~h~~~~ma~dv~~Fi~~v~~ 118 (315)
T KOG2382|consen 46 SENLERAPPAIILHG---LLGSKE--NWRSVAKNLSRKLGRDVYAVDVRNHGSSPKITVHNYEAMAEDVKLFIDGVGG 118 (315)
T ss_pred ccccCCCCceEEecc---cccCCC--CHHHHHHHhcccccCceEEEecccCCCCccccccCHHHHHHHHHHHHHHccc
Confidence 444578899999999 778885 5788999999999999999998852 32 3466778888887777764
No 94
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=77.45 E-value=4.2 Score=32.66 Aligned_cols=36 Identities=33% Similarity=0.426 Sum_probs=25.8
Q ss_pred ceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCC
Q 042415 61 KSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYR 103 (151)
Q Consensus 61 ~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YR 103 (151)
.|.||++||.+ ++.. .+...+..|+ + ++.|+.+|+|
T Consensus 88 gp~lvllHG~~---~~~~--~w~~~~~~L~-~-~~~via~Dl~ 123 (360)
T PLN02679 88 GPPVLLVHGFG---ASIP--HWRRNIGVLA-K-NYTVYAIDLL 123 (360)
T ss_pred CCeEEEECCCC---CCHH--HHHHHHHHHh-c-CCEEEEECCC
Confidence 47899999976 2322 3556666664 3 7999999998
No 95
>COG0400 Predicted esterase [General function prediction only]
Probab=77.10 E-value=7.9 Score=29.05 Aligned_cols=75 Identities=13% Similarity=0.069 Sum_probs=42.2
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCC-----------CCCCCch--HHHHHHHHHHHHH
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLA-----------PEHLVAA--AYEDSWAALKWVA 125 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla-----------p~~~~p~--~l~D~~~al~wl~ 125 (151)
...|+||++||=| |+..+ +-++.+.+.- ++.++++.=+.. .+..|.. ...+...-.+++.
T Consensus 16 p~~~~iilLHG~G---gde~~--~~~~~~~~~P--~~~~is~rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~ 88 (207)
T COG0400 16 PAAPLLILLHGLG---GDELD--LVPLPELILP--NATLVSPRGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLE 88 (207)
T ss_pred CCCcEEEEEecCC---CChhh--hhhhhhhcCC--CCeEEcCCCCccccCcccceeecCCCccchhhHHHHHHHHHHHHH
Confidence 5678999999988 44432 2232233322 477777663332 3334441 2222333345555
Q ss_pred hhhcccCCCCCccccCCCCCCceee
Q 042415 126 SHFKISAHGYETWLNTRANFTCVFT 150 (151)
Q Consensus 126 ~~~~~~~~ggd~~~~~~~D~~rv~l 150 (151)
..+. .+++|.+|+++
T Consensus 89 ~~~~----------~~gi~~~~ii~ 103 (207)
T COG0400 89 ELAE----------EYGIDSSRIIL 103 (207)
T ss_pred HHHH----------HhCCChhheEE
Confidence 5665 57899999886
No 96
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=77.04 E-value=10 Score=29.89 Aligned_cols=62 Identities=21% Similarity=0.314 Sum_probs=43.8
Q ss_pred eEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCC---CCC--CCCCchHHHHHHHHHHHHHhhhc
Q 042415 62 SSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYR---LAP--EHLVAAAYEDSWAALKWVASHFK 129 (151)
Q Consensus 62 Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YR---lap--~~~~p~~l~D~~~al~wl~~~~~ 129 (151)
.+||.+||.+=..+ .|..++..|+.+ |+.|+..|-| .++ +........|..+.++-+.+.+.
T Consensus 35 g~Vvl~HG~~Eh~~-----ry~~la~~l~~~-G~~V~~~D~RGhG~S~r~~rg~~~~f~~~~~dl~~~~~~~~ 101 (298)
T COG2267 35 GVVVLVHGLGEHSG-----RYEELADDLAAR-GFDVYALDLRGHGRSPRGQRGHVDSFADYVDDLDAFVETIA 101 (298)
T ss_pred cEEEEecCchHHHH-----HHHHHHHHHHhC-CCEEEEecCCCCCCCCCCCcCCchhHHHHHHHHHHHHHHHh
Confidence 89999999873322 356677888877 9999999987 332 33344457777777777666665
No 97
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=75.55 E-value=17 Score=29.72 Aligned_cols=80 Identities=15% Similarity=-0.027 Sum_probs=51.4
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCCC-----------Cc----hHHHHHHHHHHH
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEHL-----------VA----AAYEDSWAALKW 123 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~~-----------~p----~~l~D~~~al~w 123 (151)
.+.|+|++=||-|= +.. .++-....+|.. |++|..++..=..... .| .-..|+...|.+
T Consensus 69 ~~~PlvvlshG~Gs---~~~--~f~~~A~~lAs~-Gf~Va~~~hpgs~~~~~~~~~~~~~~~~p~~~~erp~dis~lLd~ 142 (365)
T COG4188 69 YLLPLVVLSHGSGS---YVT--GFAWLAEHLASY-GFVVAAPDHPGSNAGGAPAAYAGPGSYAPAEWWERPLDISALLDA 142 (365)
T ss_pred CcCCeEEecCCCCC---Ccc--chhhhHHHHhhC-ceEEEeccCCCcccccCChhhcCCcccchhhhhcccccHHHHHHH
Confidence 48999999999763 233 345456677776 9999988865432111 11 345567777777
Q ss_pred HHhhhcccCCCCCccccCCCCCCceee
Q 042415 124 VASHFKISAHGYETWLNTRANFTCVFT 150 (151)
Q Consensus 124 l~~~~~~~~~ggd~~~~~~~D~~rv~l 150 (151)
|.+.-+ .|=+..++|+.||-+
T Consensus 143 L~~~~~------sP~l~~~ld~~~Vgv 163 (365)
T COG4188 143 LLQLTA------SPALAGRLDPQRVGV 163 (365)
T ss_pred HHHhhc------CcccccccCccceEE
Confidence 776622 152277899998854
No 98
>PRK06489 hypothetical protein; Provisional
Probab=72.85 E-value=5.1 Score=32.04 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=23.8
Q ss_pred ceEEEEEeCCccccCCCCCcch-HHHHHHHHh------cCCcEEEEEcCCC
Q 042415 61 KSSLFYYHGGGLFMGSPFCSTY-HNYIGSLSA------KANVIVVSIDYRL 104 (151)
Q Consensus 61 ~Pvvv~iHGGg~~~g~~~~~~~-~~~~~~la~------~~g~~vv~v~YRl 104 (151)
.|.||++||++- +... .+ ..+...+.. ..++.|+.+|+|=
T Consensus 69 gpplvllHG~~~---~~~~-~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~G 115 (360)
T PRK06489 69 DNAVLVLHGTGG---SGKS-FLSPTFAGELFGPGQPLDASKYFIILPDGIG 115 (360)
T ss_pred CCeEEEeCCCCC---chhh-hccchhHHHhcCCCCcccccCCEEEEeCCCC
Confidence 588999999873 2221 11 123233311 2379999999983
No 99
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=71.52 E-value=8.6 Score=28.15 Aligned_cols=54 Identities=20% Similarity=0.291 Sum_probs=36.2
Q ss_pred eEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCC-CCCCCchHHHHHHHHH
Q 042415 62 SSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLA-PEHLVAAAYEDSWAAL 121 (151)
Q Consensus 62 Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla-p~~~~p~~l~D~~~al 121 (151)
+.|++||+|| |+.. .|..+++.+... .+.|+.+++.-. ...+.+..+++..+.+
T Consensus 1 ~~lf~~p~~g---G~~~--~y~~la~~l~~~-~~~v~~i~~~~~~~~~~~~~si~~la~~y 55 (229)
T PF00975_consen 1 RPLFCFPPAG---GSAS--SYRPLARALPDD-VIGVYGIEYPGRGDDEPPPDSIEELASRY 55 (229)
T ss_dssp -EEEEESSTT---CSGG--GGHHHHHHHTTT-EEEEEEECSTTSCTTSHEESSHHHHHHHH
T ss_pred CeEEEEcCCc---cCHH--HHHHHHHhCCCC-eEEEEEEecCCCCCCCCCCCCHHHHHHHH
Confidence 3578999988 5554 577888887765 588889988865 2334455566655433
No 100
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=71.21 E-value=25 Score=22.73 Aligned_cols=75 Identities=9% Similarity=0.030 Sum_probs=45.6
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCC-----CCchHHHHHHHHHHHHHhhhcccCC
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEH-----LVAAAYEDSWAALKWVASHFKISAH 133 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~-----~~p~~l~D~~~al~wl~~~~~~~~~ 133 (151)
.+..++|-.+.|. . ..++..+..++|+.++.++--..+.. +-|.. +......++++++-.
T Consensus 20 ~~~kivvD~~~G~-----~-----~~~~~~ll~~lg~~~~~~n~~~d~~f~~~~~p~p~~-~~l~~~~~~v~~~~a---- 84 (104)
T PF02879_consen 20 SGLKIVVDCMNGA-----G-----SDILPRLLERLGCDVIELNCDPDPDFPNQHAPNPEE-ESLQRLIKIVRESGA---- 84 (104)
T ss_dssp TTCEEEEE-TTST-----T-----HHHHHHHHHHTTCEEEEESSS-STTGTTTSTSSTST-TTTHHHHHHHHHSTT----
T ss_pred CCCEEEEECCCCH-----H-----HHHHHHHHHHcCCcEEEEeccccccccccccccccc-chhHHHHHHhhccCc----
Confidence 3456777654443 1 34667888889999988876655433 22333 445555666665533
Q ss_pred CCCccccCCCCCCceee
Q 042415 134 GYETWLNTRANFTCVFT 150 (151)
Q Consensus 134 ggd~~~~~~~D~~rv~l 150 (151)
|-+...-.|.+|+.+
T Consensus 85 --d~g~~~DgDaDRl~~ 99 (104)
T PF02879_consen 85 --DLGIAFDGDADRLGV 99 (104)
T ss_dssp --SEEEEE-TTSSBEEE
T ss_pred --eEEEEECCcCceeEE
Confidence 556677899999876
No 101
>PRK11071 esterase YqiA; Provisional
Probab=69.61 E-value=19 Score=26.21 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=21.7
Q ss_pred eEEEEEeCCccccCCCCCcchH-HHHHHHHhc--CCcEEEEEcCC
Q 042415 62 SSLFYYHGGGLFMGSPFCSTYH-NYIGSLSAK--ANVIVVSIDYR 103 (151)
Q Consensus 62 Pvvv~iHGGg~~~g~~~~~~~~-~~~~~la~~--~g~~vv~v~YR 103 (151)
|.|||+||-+ ++..+ +. ..+..++.+ .++.|+.++.+
T Consensus 2 p~illlHGf~---ss~~~--~~~~~~~~~l~~~~~~~~v~~~dl~ 41 (190)
T PRK11071 2 STLLYLHGFN---SSPRS--AKATLLKNWLAQHHPDIEMIVPQLP 41 (190)
T ss_pred CeEEEECCCC---CCcch--HHHHHHHHHHHHhCCCCeEEeCCCC
Confidence 6899999954 33332 22 223333332 36888888877
No 102
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=68.92 E-value=9.7 Score=31.59 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=27.9
Q ss_pred CceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCC
Q 042415 60 TKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRL 104 (151)
Q Consensus 60 ~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 104 (151)
.-..||++=||- .++.+...++.+...+|.+.+++||+|+|-=
T Consensus 33 e~kaIvfiI~Gf--G~dan~~~~d~~r~~iA~~fnvv~I~V~YHC 75 (403)
T PF11144_consen 33 EIKAIVFIIPGF--GADANSNYLDFMREYIAKKFNVVVISVNYHC 75 (403)
T ss_pred CceEEEEEeCCc--CCCcchHHHHHHHHHHHHhCCEEEEEeeeeh
Confidence 334455554443 1555543445566788999999999999953
No 103
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=67.95 E-value=37 Score=27.86 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=33.8
Q ss_pred CCC-CCCceEEEEEeCCc---cccCCCCCcchHHHHHHHHhcCCcEEEEEc
Q 042415 55 PPL-KQTKSSLFYYHGGG---LFMGSPFCSTYHNYIGSLSAKANVIVVSID 101 (151)
Q Consensus 55 P~~-~~~~Pvvv~iHGGg---~~~g~~~~~~~~~~~~~la~~~g~~vv~v~ 101 (151)
|++ .....++|+|-||. +.....+ .....+..+|..+|.+|+.+.
T Consensus 57 P~~~~~~~~all~i~gG~~~~~~~~~~~--~~~~~~~~~A~~t~siv~~l~ 105 (367)
T PF10142_consen 57 PKNDKNPDTALLFITGGSNRNWPGPPPD--FDDELLQMIARATGSIVAILY 105 (367)
T ss_pred CCCCCCCceEEEEEECCcccCCCCCCCc--chHHHHHHHHHhcCCEEEEeC
Confidence 777 57788999999998 4333332 346678999999999888765
No 104
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=67.39 E-value=22 Score=27.62 Aligned_cols=59 Identities=15% Similarity=0.067 Sum_probs=30.9
Q ss_pred eEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCCC-----CchHHHHHHHHHHHHHhh
Q 042415 62 SSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEHL-----VAAAYEDSWAALKWVASH 127 (151)
Q Consensus 62 Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~~-----~p~~l~D~~~al~wl~~~ 127 (151)
+.||++||+.- +... ......+. ..++.|+.+|+|=--... +...++|..+.+..+.++
T Consensus 28 ~~lvllHG~~~---~~~~---~~~~~~~~-~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~dl~~l~~~ 91 (306)
T TIGR01249 28 KPVVFLHGGPG---SGTD---PGCRRFFD-PETYRIVLFDQRGCGKSTPHACLEENTTWDLVADIEKLREK 91 (306)
T ss_pred CEEEEECCCCC---CCCC---HHHHhccC-ccCCEEEEECCCCCCCCCCCCCcccCCHHHHHHHHHHHHHH
Confidence 45799999743 2211 12222232 238999999998431111 122345555555555444
No 105
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=66.65 E-value=12 Score=31.73 Aligned_cols=45 Identities=18% Similarity=0.252 Sum_probs=27.5
Q ss_pred CCCCCCceEEEEEeCCccccCCCCCcchHH-HHHHHHh--cCCcEEEEEcCCC
Q 042415 55 PPLKQTKSSLFYYHGGGLFMGSPFCSTYHN-YIGSLSA--KANVIVVSIDYRL 104 (151)
Q Consensus 55 P~~~~~~Pvvv~iHGGg~~~g~~~~~~~~~-~~~~la~--~~g~~vv~v~YRl 104 (151)
|......|.||++||.+ ++.. .+.. .+..++. +.++.|+.+|+|=
T Consensus 195 p~~~~~k~~VVLlHG~~---~s~~--~W~~~~~~~L~~~~~~~yrVia~Dl~G 242 (481)
T PLN03087 195 PKDNKAKEDVLFIHGFI---SSSA--FWTETLFPNFSDAAKSTYRLFAVDLLG 242 (481)
T ss_pred CCCCCCCCeEEEECCCC---ccHH--HHHHHHHHHHHHHhhCCCEEEEECCCC
Confidence 44434457899999986 3332 2332 2344432 3489999999975
No 106
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=66.03 E-value=13 Score=31.04 Aligned_cols=77 Identities=16% Similarity=0.209 Sum_probs=37.3
Q ss_pred CCCCCCceEEEEEeCCccccCCCCCcchHHHHHH-HHhcCCcEEEEEcCCCC---CCCCCchH-HHHHHHHHHHHHhhhc
Q 042415 55 PPLKQTKSSLFYYHGGGLFMGSPFCSTYHNYIGS-LSAKANVIVVSIDYRLA---PEHLVAAA-YEDSWAALKWVASHFK 129 (151)
Q Consensus 55 P~~~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~-la~~~g~~vv~v~YRla---p~~~~p~~-l~D~~~al~wl~~~~~ 129 (151)
|...++.|+||.+-|-- +.+. .+....+. ++.+ |+.++++|-.=. +..++..- -.-..+++.|+.+..
T Consensus 184 P~~~~p~P~VIv~gGlD---s~qe--D~~~l~~~~l~~r-GiA~LtvDmPG~G~s~~~~l~~D~~~l~~aVLd~L~~~p- 256 (411)
T PF06500_consen 184 PSGEKPYPTVIVCGGLD---SLQE--DLYRLFRDYLAPR-GIAMLTVDMPGQGESPKWPLTQDSSRLHQAVLDYLASRP- 256 (411)
T ss_dssp SSSSS-EEEEEEE--TT---S-GG--GGHHHHHCCCHHC-T-EEEEE--TTSGGGTTT-S-S-CCHHHHHHHHHHHHST-
T ss_pred CCCCCCCCEEEEeCCcc---hhHH--HHHHHHHHHHHhC-CCEEEEEccCCCcccccCCCCcCHHHHHHHHHHHHhcCC-
Confidence 77668899888754421 2222 23344444 4444 999999996633 22222111 011235567766543
Q ss_pred ccCCCCCccccCCCCCCceee
Q 042415 130 ISAHGYETWLNTRANFTCVFT 150 (151)
Q Consensus 130 ~~~~ggd~~~~~~~D~~rv~l 150 (151)
| +|.+||-+
T Consensus 257 --------~----VD~~RV~~ 265 (411)
T PF06500_consen 257 --------W----VDHTRVGA 265 (411)
T ss_dssp --------T----EEEEEEEE
T ss_pred --------c----cChhheEE
Confidence 3 88888854
No 107
>PLN02578 hydrolase
Probab=65.02 E-value=26 Score=27.95 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=24.1
Q ss_pred eEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCC
Q 042415 62 SSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRL 104 (151)
Q Consensus 62 Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 104 (151)
|.||++||-| ++.. .+...+..|+. ++.|+.+|+|=
T Consensus 87 ~~vvliHG~~---~~~~--~w~~~~~~l~~--~~~v~~~D~~G 122 (354)
T PLN02578 87 LPIVLIHGFG---ASAF--HWRYNIPELAK--KYKVYALDLLG 122 (354)
T ss_pred CeEEEECCCC---CCHH--HHHHHHHHHhc--CCEEEEECCCC
Confidence 5579999854 2322 34455566653 69999999984
No 108
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=63.68 E-value=17 Score=26.72 Aligned_cols=38 Identities=16% Similarity=0.349 Sum_probs=28.1
Q ss_pred eEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCC
Q 042415 62 SSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYR 103 (151)
Q Consensus 62 Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YR 103 (151)
-+||.-||-| ++.++..+...|..++.+ |+.|+-.++.
T Consensus 15 ~tilLaHGAG---asmdSt~m~~~a~~la~~-G~~vaRfefp 52 (213)
T COG3571 15 VTILLAHGAG---ASMDSTSMTAVAAALARR-GWLVARFEFP 52 (213)
T ss_pred EEEEEecCCC---CCCCCHHHHHHHHHHHhC-ceeEEEeecc
Confidence 4667779988 555555677788888887 9988877643
No 109
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.44 E-value=14 Score=28.31 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=24.9
Q ss_pred CCceEEEEEeCCccccCCC-----------CCcchHHHHHHHHhcCCcEEEEEc
Q 042415 59 QTKSSLFYYHGGGLFMGSP-----------FCSTYHNYIGSLSAKANVIVVSID 101 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~-----------~~~~~~~~~~~la~~~g~~vv~v~ 101 (151)
.+...+|.|||.|++.... ++.+.-+++++..+. |+.|+..+
T Consensus 99 ~~~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~-Gygviv~N 151 (297)
T KOG3967|consen 99 NPQKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVAE-GYGVIVLN 151 (297)
T ss_pred CccceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHHc-CCcEEEeC
Confidence 5667899999999876542 111223556554443 66555544
No 110
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=60.52 E-value=71 Score=25.80 Aligned_cols=59 Identities=15% Similarity=0.071 Sum_probs=36.4
Q ss_pred ceeeeeEEeCCCCC--CC-CCCCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCC
Q 042415 41 VVFSKDVVIVPEKD--PP-LKQTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLA 105 (151)
Q Consensus 41 ~~~~~d~~~~~~~~--P~-~~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla 105 (151)
.+..+-+++.++.. .. +.+..|+|+++|| |---.- .++.-+..|+.+ |+.|+++|.|=-
T Consensus 21 ~~~hk~~~~~gI~~h~~e~g~~~gP~illlHG--fPe~wy---swr~q~~~la~~-~~rviA~DlrGy 82 (322)
T KOG4178|consen 21 AISHKFVTYKGIRLHYVEGGPGDGPIVLLLHG--FPESWY---SWRHQIPGLASR-GYRVIAPDLRGY 82 (322)
T ss_pred hcceeeEEEccEEEEEEeecCCCCCEEEEEcc--CCccch---hhhhhhhhhhhc-ceEEEecCCCCC
Confidence 44444455544322 22 2367899999998 332222 234455677777 899999998854
No 111
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=60.34 E-value=33 Score=25.80 Aligned_cols=63 Identities=14% Similarity=0.219 Sum_probs=32.3
Q ss_pred ceEEEEEeCCccccCCCCCcchHHHHHHHH-------hcCCcEEEEEcCCCCCCCCCch----HHHHHHHHHHHHHhhh
Q 042415 61 KSSLFYYHGGGLFMGSPFCSTYHNYIGSLS-------AKANVIVVSIDYRLAPEHLVAA----AYEDSWAALKWVASHF 128 (151)
Q Consensus 61 ~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la-------~~~g~~vv~v~YRlap~~~~p~----~l~D~~~al~wl~~~~ 128 (151)
...||||||- .|+.. ....+...+. ....+.++++||.-..-.-... +.+-+..+++.+.+..
T Consensus 4 g~pVlFIhG~---~Gs~~--q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s~~~g~~l~~q~~~~~~~i~~i~~~~ 77 (225)
T PF07819_consen 4 GIPVLFIHGN---AGSYK--QVRSLASELQRKALLNDNSSHFDFFTVDFNEELSAFHGRTLQRQAEFLAEAIKYILELY 77 (225)
T ss_pred CCEEEEECcC---CCCHh--HHHHHHHHHhhhhhhccCccceeEEEeccCccccccccccHHHHHHHHHHHHHHHHHhh
Confidence 4568999993 35543 2233332221 1124789999988653332223 3333444555555443
No 112
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=60.18 E-value=55 Score=26.79 Aligned_cols=70 Identities=10% Similarity=0.131 Sum_probs=47.4
Q ss_pred CCceEEEEEeCCccccCCCCC-cchHHHHHHHHhcCCcEEEEEcCCCCCCC----CCchHHHHHHHHHHHHHhhh
Q 042415 59 QTKSSLFYYHGGGLFMGSPFC-STYHNYIGSLSAKANVIVVSIDYRLAPEH----LVAAAYEDSWAALKWVASHF 128 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~-~~~~~~~~~la~~~g~~vv~v~YRlap~~----~~p~~l~D~~~al~wl~~~~ 128 (151)
++..-||+.=|=|........ .........++.++++.|+..|||=--.. .....+.|-.+.+++++++.
T Consensus 135 ~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg~S~G~~s~~dLv~~~~a~v~yL~d~~ 209 (365)
T PF05677_consen 135 KPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGVGSSTGPPSRKDLVKDYQACVRYLRDEE 209 (365)
T ss_pred CCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCccccCCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 566788888777655554210 01123567889999999999999954222 23567778888889998754
No 113
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=57.54 E-value=29 Score=27.04 Aligned_cols=47 Identities=28% Similarity=0.239 Sum_probs=32.7
Q ss_pred hHHHHHHHHhcCCcEEEEEcCCCCCCC------CC-----chHHHHHHHHHHHHHhhhc
Q 042415 82 YHNYIGSLSAKANVIVVSIDYRLAPEH------LV-----AAAYEDSWAALKWVASHFK 129 (151)
Q Consensus 82 ~~~~~~~la~~~g~~vv~v~YRlap~~------~~-----p~~l~D~~~al~wl~~~~~ 129 (151)
|..++.. +.+.|+.|...+||=.-+. .+ -.+..|.-+|++|+++...
T Consensus 46 YRrfA~~-a~~~Gf~Vlt~dyRG~g~S~p~~~~~~~~~~~DwA~~D~~aal~~~~~~~~ 103 (281)
T COG4757 46 YRRFAAA-AAKAGFEVLTFDYRGIGQSRPASLSGSQWRYLDWARLDFPAALAALKKALP 103 (281)
T ss_pred hHHHHHH-hhccCceEEEEecccccCCCccccccCccchhhhhhcchHHHHHHHHhhCC
Confidence 4555544 4555999999999965332 12 3467788899999998554
No 114
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=57.39 E-value=20 Score=22.05 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=24.0
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEE
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVV 98 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv 98 (151)
...|.++.+|||.= + ..+.++...|.+.|+.++
T Consensus 29 ~~~~~~~lvhGga~----~---GaD~iA~~wA~~~gv~~~ 61 (71)
T PF10686_consen 29 ARHPDMVLVHGGAP----K---GADRIAARWARERGVPVI 61 (71)
T ss_pred HhCCCEEEEECCCC----C---CHHHHHHHHHHHCCCeeE
Confidence 45588899999862 1 346688889988887654
No 115
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=52.10 E-value=21 Score=28.51 Aligned_cols=35 Identities=20% Similarity=0.410 Sum_probs=27.9
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCC
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAP 106 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap 106 (151)
...|.|+|.-|+|+ .+.++|.. |+.||++|....|
T Consensus 250 ~~vPmi~fakG~g~------------~Le~l~~t-G~DVvgLDWTvdp 284 (359)
T KOG2872|consen 250 APVPMILFAKGSGG------------ALEELAQT-GYDVVGLDWTVDP 284 (359)
T ss_pred CCCceEEEEcCcch------------HHHHHHhc-CCcEEeecccccH
Confidence 56699999999875 34566665 9999999998875
No 116
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=52.05 E-value=10 Score=28.28 Aligned_cols=40 Identities=23% Similarity=0.393 Sum_probs=24.0
Q ss_pred CCceEEEEEeC-CccccCCCCCcchHHHHHHHHhcCC---cEEEEEcC
Q 042415 59 QTKSSLFYYHG-GGLFMGSPFCSTYHNYIGSLSAKAN---VIVVSIDY 102 (151)
Q Consensus 59 ~~~Pvvv~iHG-Gg~~~g~~~~~~~~~~~~~la~~~g---~~vv~v~Y 102 (151)
++.|||+++|| ++|..... ....+..++.+.. .++|.+.+
T Consensus 22 ~~~PvlylldG~~~~~~~~~----~~~~~~~~~~~~~~~~~iiV~i~~ 65 (251)
T PF00756_consen 22 KPYPVLYLLDGQSGWFRNGN----AQEALDRLIAEGKIPPMIIVVIPN 65 (251)
T ss_dssp TTEEEEEEESHTTHHHHHHH----HHHHHHHHHHHHTSEEEEEEEEES
T ss_pred CCCEEEEEccCCccccccch----HHHHHHHHHHhCCCCceEEEEEec
Confidence 89999999999 77764332 2334444554422 45555554
No 117
>KOG4127 consensus Renal dipeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=52.02 E-value=76 Score=26.23 Aligned_cols=69 Identities=10% Similarity=0.087 Sum_probs=45.8
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCCCCchHHHHHHHHHHHHHhhhc
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEHLVAAAYEDSWAALKWVASHFK 129 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~~~p~~l~D~~~al~wl~~~~~ 129 (151)
.+.| +||-|..++...+.....-+..++.++..-|++.|+. |+--=.+.-.+-+.|+.+.+.++++-+.
T Consensus 265 S~AP-VIFSHSsA~~vcns~rNVPDdVL~llk~NgGvVMVnf-y~~~isc~~~A~v~~v~~Hi~hIr~VaG 333 (419)
T KOG4127|consen 265 SRAP-VIFSHSSAYSVCNSSRNVPDDVLQLLKENGGVVMVNF-YPGFISCSDRATVSDVADHINHIRAVAG 333 (419)
T ss_pred hcCc-eEeecccHHHHhcCccCCcHHHHHHHhhcCCEEEEEe-ecccccCCCcccHHHHHHHHHHHHHhhc
Confidence 4445 4788999998887664344566777766544444443 4322225556679999999999998654
No 118
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=51.84 E-value=35 Score=26.70 Aligned_cols=40 Identities=15% Similarity=0.104 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCcEEEEEcCCCCCCCCCch---HHHHHHHHHHHHH
Q 042415 84 NYIGSLSAKANVIVVSIDYRLAPEHLVAA---AYEDSWAALKWVA 125 (151)
Q Consensus 84 ~~~~~la~~~g~~vv~v~YRlap~~~~p~---~l~D~~~al~wl~ 125 (151)
.++..+.++ |++|+..|| .++..+|-. .-..+++++|-.+
T Consensus 17 ~~l~~~L~~-GyaVv~pDY-~Glg~~y~~~~~~a~avLD~vRAA~ 59 (290)
T PF03583_consen 17 PFLAAWLAR-GYAVVAPDY-EGLGTPYLNGRSEAYAVLDAVRAAR 59 (290)
T ss_pred HHHHHHHHC-CCEEEecCC-CCCCCcccCcHhHHHHHHHHHHHHH
Confidence 455666666 999999999 566667743 3344444444444
No 119
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=50.71 E-value=44 Score=25.29 Aligned_cols=41 Identities=22% Similarity=0.376 Sum_probs=21.9
Q ss_pred EEEEeCCccccCCCCCcchHHHHHHHHhcCCcE---EEEEcCCCCCCCC
Q 042415 64 LFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVI---VVSIDYRLAPEHL 109 (151)
Q Consensus 64 vv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~---vv~v~YRlap~~~ 109 (151)
||++||=+ ++.. ..+..+...|.++ |+. |+..+|--.+..+
T Consensus 4 VVlVHG~~---~~~~-~~w~~~~~~l~~~-GY~~~~vya~tyg~~~~~~ 47 (219)
T PF01674_consen 4 VVLVHGTG---GNAY-SNWSTLAPYLKAA-GYCDSEVYALTYGSGNGSP 47 (219)
T ss_dssp EEEE--TT---TTTC-GGCCHHHHHHHHT-T--CCCEEEE--S-CCHHT
T ss_pred EEEECCCC---cchh-hCHHHHHHHHHHc-CCCcceeEeccCCCCCCCC
Confidence 68899966 3232 2456666777776 988 8999997665433
No 120
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=50.48 E-value=1.2e+02 Score=26.26 Aligned_cols=70 Identities=16% Similarity=0.102 Sum_probs=41.2
Q ss_pred CCCC-CCceEEEEEeCCccccCCCC--CcchHHHHHHHHhcCCcEEEEEcCCCCCCC----CCc-hHHHHHHHHHHHHHh
Q 042415 55 PPLK-QTKSSLFYYHGGGLFMGSPF--CSTYHNYIGSLSAKANVIVVSIDYRLAPEH----LVA-AAYEDSWAALKWVAS 126 (151)
Q Consensus 55 P~~~-~~~Pvvv~iHGGg~~~g~~~--~~~~~~~~~~la~~~g~~vv~v~YRlap~~----~~p-~~l~D~~~al~wl~~ 126 (151)
|... ...+-||++|| |+...-- .....++++.|+.+ |+.|+.+++|---.. .+- ...+++.+++..+.+
T Consensus 181 P~t~~~~~~PlLiVp~--~i~k~yilDL~p~~Slv~~L~~q-Gf~V~~iDwrgpg~s~~~~~~ddY~~~~i~~al~~v~~ 257 (532)
T TIGR01838 181 PTTETVHKTPLLIVPP--WINKYYILDLRPQNSLVRWLVEQ-GHTVFVISWRNPDASQADKTFDDYIRDGVIAALEVVEA 257 (532)
T ss_pred CCCCcCCCCcEEEECc--ccccceeeecccchHHHHHHHHC-CcEEEEEECCCCCcccccCChhhhHHHHHHHHHHHHHH
Confidence 5544 24556788888 3222210 00124788888887 999999999852211 111 233457777888775
Q ss_pred h
Q 042415 127 H 127 (151)
Q Consensus 127 ~ 127 (151)
.
T Consensus 258 ~ 258 (532)
T TIGR01838 258 I 258 (532)
T ss_pred h
Confidence 4
No 121
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=49.85 E-value=63 Score=31.85 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=26.9
Q ss_pred CceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCC
Q 042415 60 TKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRL 104 (151)
Q Consensus 60 ~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 104 (151)
..|.||++||.+ ++.. .+...+..|.. ++.|+.+|+|=
T Consensus 1370 ~~~~vVllHG~~---~s~~--~w~~~~~~L~~--~~rVi~~Dl~G 1407 (1655)
T PLN02980 1370 EGSVVLFLHGFL---GTGE--DWIPIMKAISG--SARCISIDLPG 1407 (1655)
T ss_pred CCCeEEEECCCC---CCHH--HHHHHHHHHhC--CCEEEEEcCCC
Confidence 457999999977 3332 35566666653 58999999884
No 122
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=48.74 E-value=30 Score=27.47 Aligned_cols=66 Identities=12% Similarity=0.165 Sum_probs=40.8
Q ss_pred CceEEEEEeCCccccCCCCC-----------------cch----HHHHHHHHhcCCcEEEEEcCCCC---CC--------
Q 042415 60 TKSSLFYYHGGGLFMGSPFC-----------------STY----HNYIGSLSAKANVIVVSIDYRLA---PE-------- 107 (151)
Q Consensus 60 ~~Pvvv~iHGGg~~~g~~~~-----------------~~~----~~~~~~la~~~g~~vv~v~YRla---p~-------- 107 (151)
++.+|+.+||=|=..+.... ..| ..++..|+.+ |+.|+.+|.|=- ..
T Consensus 20 ~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~-G~~V~~~D~rGHG~S~~~~~~~g~~ 98 (332)
T TIGR01607 20 AIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKN-GYSVYGLDLQGHGESDGLQNLRGHI 98 (332)
T ss_pred CeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHC-CCcEEEecccccCCCccccccccch
Confidence 56799999994433331100 012 4567788777 999999998731 11
Q ss_pred CCCchHHHHHHHHHHHHHh
Q 042415 108 HLVAAAYEDSWAALKWVAS 126 (151)
Q Consensus 108 ~~~p~~l~D~~~al~wl~~ 126 (151)
..|..-++|+...++.+++
T Consensus 99 ~~~~~~v~Dl~~~i~~~~~ 117 (332)
T TIGR01607 99 NCFDDLVYDVIQYMNRIND 117 (332)
T ss_pred hhHHHHHHHHHHHHHHhhh
Confidence 1344556777777777655
No 123
>PHA01735 hypothetical protein
Probab=48.35 E-value=17 Score=22.52 Aligned_cols=17 Identities=35% Similarity=0.489 Sum_probs=14.6
Q ss_pred chHHHHHHHHHHHHHhh
Q 042415 111 AAAYEDSWAALKWVASH 127 (151)
Q Consensus 111 p~~l~D~~~al~wl~~~ 127 (151)
-+...|..+|..|+++|
T Consensus 29 eATtaDL~AA~d~Lk~N 45 (76)
T PHA01735 29 EATTADLRAACDWLKSN 45 (76)
T ss_pred cccHHHHHHHHHHHHHC
Confidence 35578999999999988
No 124
>PRK07868 acyl-CoA synthetase; Validated
Probab=47.07 E-value=64 Score=29.83 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=27.1
Q ss_pred CceEEEEEeCCccccCCCCC--cchHHHHHHHHhcCCcEEEEEcCCCC
Q 042415 60 TKSSLFYYHGGGLFMGSPFC--STYHNYIGSLSAKANVIVVSIDYRLA 105 (151)
Q Consensus 60 ~~Pvvv~iHGGg~~~g~~~~--~~~~~~~~~la~~~g~~vv~v~YRla 105 (151)
..|.||++||-+ ...... ....+++..|+.+ |+.|+.+|+...
T Consensus 66 ~~~plllvhg~~--~~~~~~d~~~~~s~v~~L~~~-g~~v~~~d~G~~ 110 (994)
T PRK07868 66 VGPPVLMVHPMM--MSADMWDVTRDDGAVGILHRA-GLDPWVIDFGSP 110 (994)
T ss_pred CCCcEEEECCCC--CCccceecCCcccHHHHHHHC-CCEEEEEcCCCC
Confidence 457899999943 222111 0112346677776 999999998753
No 125
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=46.43 E-value=1.2e+02 Score=23.46 Aligned_cols=64 Identities=11% Similarity=0.175 Sum_probs=43.7
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCC-------CCchHHHHHHHHHHHHHh
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEH-------LVAAAYEDSWAALKWVAS 126 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~-------~~p~~l~D~~~al~wl~~ 126 (151)
+..-++|..|| |. .++........+..++++ |+.++-+|++=.-+. .|..-.+|....++++.+
T Consensus 31 gs~e~vvlcHG--fr-S~Kn~~~~~~vA~~~e~~-gis~fRfDF~GnGeS~gsf~~Gn~~~eadDL~sV~q~~s~ 101 (269)
T KOG4667|consen 31 GSTEIVVLCHG--FR-SHKNAIIMKNVAKALEKE-GISAFRFDFSGNGESEGSFYYGNYNTEADDLHSVIQYFSN 101 (269)
T ss_pred CCceEEEEeec--cc-cccchHHHHHHHHHHHhc-CceEEEEEecCCCCcCCccccCcccchHHHHHHHHHHhcc
Confidence 45678899998 32 333322233444555555 999999999976432 456667999999999875
No 126
>KOG3101 consensus Esterase D [General function prediction only]
Probab=44.30 E-value=45 Score=25.70 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=28.2
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCC
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYR 103 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YR 103 (151)
++.|++.|+-| ...+.+...-.+.....|++.|.+||.+|-.
T Consensus 42 k~~P~lf~LSG---LTCT~~Nfi~Ksg~qq~As~hgl~vV~PDTS 83 (283)
T KOG3101|consen 42 KRCPVLFYLSG---LTCTHENFIEKSGFQQQASKHGLAVVAPDTS 83 (283)
T ss_pred CcCceEEEecC---CcccchhhHhhhhHHHhHhhcCeEEECCCCC
Confidence 67899999877 2233322222344567788889999998854
No 127
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=44.22 E-value=45 Score=25.12 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCCCCC------------CchHHHHHHHHHHHHHhhhc
Q 042415 95 VIVVSIDYRLAPEHL------------VAAAYEDSWAALKWVASHFK 129 (151)
Q Consensus 95 ~~vv~v~YRlap~~~------------~p~~l~D~~~al~wl~~~~~ 129 (151)
..|+++-||.+.-.. +-.++.|+.+|+++-.+|..
T Consensus 46 ~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n 92 (207)
T PF11288_consen 46 CNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYN 92 (207)
T ss_pred CccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcC
Confidence 689999999874332 33589999999999888754
No 128
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=43.58 E-value=63 Score=26.91 Aligned_cols=68 Identities=19% Similarity=0.194 Sum_probs=43.6
Q ss_pred CCCCCCceEEEEEeC-----CccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCC----------CC-CC-C------c
Q 042415 55 PPLKQTKSSLFYYHG-----GGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLA----------PE-HL-V------A 111 (151)
Q Consensus 55 P~~~~~~Pvvv~iHG-----Gg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla----------p~-~~-~------p 111 (151)
|...+++|+|+..|| ..|+.-... ..+..+....|+-|..-|-|-. |. .. | .
T Consensus 67 p~~~~~rp~Vll~HGLl~sS~~Wv~n~p~-----~sLaf~LadaGYDVWLgN~RGn~ySr~h~~l~~~~~~~FW~FS~~E 141 (403)
T KOG2624|consen 67 PRGKKKRPVVLLQHGLLASSSSWVLNGPE-----QSLAFLLADAGYDVWLGNNRGNTYSRKHKKLSPSSDKEFWDFSWHE 141 (403)
T ss_pred cCCCCCCCcEEEeeccccccccceecCcc-----ccHHHHHHHcCCceeeecCcCcccchhhcccCCcCCcceeecchhh
Confidence 666689999999998 355544432 2344555556999999998843 32 11 1 1
Q ss_pred hHHHHHHHHHHHHHhh
Q 042415 112 AAYEDSWAALKWVASH 127 (151)
Q Consensus 112 ~~l~D~~~al~wl~~~ 127 (151)
-+..|+-+.+.++.+.
T Consensus 142 m~~yDLPA~IdyIL~~ 157 (403)
T KOG2624|consen 142 MGTYDLPAMIDYILEK 157 (403)
T ss_pred hhhcCHHHHHHHHHHh
Confidence 2666777777776654
No 129
>PRK07581 hypothetical protein; Validated
Probab=43.15 E-value=48 Score=25.99 Aligned_cols=40 Identities=8% Similarity=-0.025 Sum_probs=23.0
Q ss_pred CceEEEEEeCCccccCCCCCcchHHHH---HHHHhcCCcEEEEEcCCCC
Q 042415 60 TKSSLFYYHGGGLFMGSPFCSTYHNYI---GSLSAKANVIVVSIDYRLA 105 (151)
Q Consensus 60 ~~Pvvv~iHGGg~~~g~~~~~~~~~~~---~~la~~~g~~vv~v~YRla 105 (151)
+.|+||+.||+++.... +...+ ..+.. .++.|+++|+|=.
T Consensus 40 ~~~~vll~~~~~~~~~~-----~~~~~~~~~~l~~-~~~~vi~~D~~G~ 82 (339)
T PRK07581 40 KDNAILYPTWYSGTHQD-----NEWLIGPGRALDP-EKYFIIIPNMFGN 82 (339)
T ss_pred CCCEEEEeCCCCCCccc-----chhhccCCCccCc-CceEEEEecCCCC
Confidence 44777777777753222 11111 13333 3799999999854
No 130
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=43.12 E-value=20 Score=28.68 Aligned_cols=39 Identities=26% Similarity=0.447 Sum_probs=27.6
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcC
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDY 102 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~Y 102 (151)
...|.||++|| |.. +.. .++..+..|....|+.|+++|.
T Consensus 56 ~~~~pvlllHG--F~~-~~~--~w~~~~~~L~~~~~~~v~aiDl 94 (326)
T KOG1454|consen 56 KDKPPVLLLHG--FGA-SSF--SWRRVVPLLSKAKGLRVLAIDL 94 (326)
T ss_pred CCCCcEEEecc--ccC-Ccc--cHhhhccccccccceEEEEEec
Confidence 56788999999 544 332 3566667777776788888874
No 131
>TIGR00632 vsr DNA mismatch endonuclease Vsr. All proteins in this family for which functions are known are G:T mismatch endonucleases that function in a specialized mismatch repair process used usually to repair G:T mismatches in specific sections of the genome. This family was based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Members of this family typically are found near to a DNA cytosine methyltransferase.
Probab=42.76 E-value=45 Score=22.80 Aligned_cols=15 Identities=13% Similarity=0.233 Sum_probs=13.2
Q ss_pred CCceEEEEEeCCccc
Q 042415 59 QTKSSLFYYHGGGLF 73 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~ 73 (151)
.+..++||+||+-|.
T Consensus 54 ~~~klaIfVDGcfWH 68 (117)
T TIGR00632 54 DEYRCVIFIHGCFWH 68 (117)
T ss_pred cCCCEEEEEcccccc
Confidence 677899999999887
No 132
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=40.84 E-value=47 Score=26.23 Aligned_cols=10 Identities=10% Similarity=0.371 Sum_probs=9.4
Q ss_pred CcEEEEEcCC
Q 042415 94 NVIVVSIDYR 103 (151)
Q Consensus 94 g~~vv~v~YR 103 (151)
++.|+.+|+|
T Consensus 99 ~~~Vi~~Dl~ 108 (343)
T PRK08775 99 RFRLLAFDFI 108 (343)
T ss_pred ccEEEEEeCC
Confidence 7999999999
No 133
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=40.03 E-value=71 Score=28.85 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=32.2
Q ss_pred HHHHHHhcCCcEEEEEcCCCC--CCC---C-CchHHHHHHHHHHHHHhhh
Q 042415 85 YIGSLSAKANVIVVSIDYRLA--PEH---L-VAAAYEDSWAALKWVASHF 128 (151)
Q Consensus 85 ~~~~la~~~g~~vv~v~YRla--p~~---~-~p~~l~D~~~al~wl~~~~ 128 (151)
+...++.+ |++||.++.|=. .+. . .+...+|..+++.|+..+.
T Consensus 271 ~~~~~~~r-GYaVV~~D~RGtg~SeG~~~~~~~~E~~D~~~vIeWl~~~~ 319 (767)
T PRK05371 271 LNDYFLPR-GFAVVYVSGIGTRGSDGCPTTGDYQEIESMKAVIDWLNGRA 319 (767)
T ss_pred HHHHHHhC-CeEEEEEcCCCCCCCCCcCccCCHHHHHHHHHHHHHHhhCC
Confidence 33566666 999999998854 222 2 3778899999999999753
No 134
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=39.45 E-value=75 Score=25.32 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=30.8
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCC
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLA 105 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRla 105 (151)
.+..+||=+||.- ||..+ -.+++....+.|+.++.+||.=.
T Consensus 33 s~~gTVv~~hGsP---GSH~D---FkYi~~~l~~~~iR~I~iN~PGf 73 (297)
T PF06342_consen 33 SPLGTVVAFHGSP---GSHND---FKYIRPPLDEAGIRFIGINYPGF 73 (297)
T ss_pred CCceeEEEecCCC---CCccc---hhhhhhHHHHcCeEEEEeCCCCC
Confidence 4566899999976 77764 34566666677999999999843
No 135
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=35.44 E-value=56 Score=23.13 Aligned_cols=43 Identities=9% Similarity=0.138 Sum_probs=26.0
Q ss_pred CCceEEEEEeCCccccCCCCC-cchHHHHHHHHhcCCcEEEEEcC
Q 042415 59 QTKSSLFYYHGGGLFMGSPFC-STYHNYIGSLSAKANVIVVSIDY 102 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~-~~~~~~~~~la~~~g~~vv~v~Y 102 (151)
+..++||+|+.++|....... ..+......+.. .|+.|+.|..
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~-~~v~vv~Is~ 71 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK-LNAEVLGVST 71 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEec
Confidence 457899999988887554431 122223344444 3788887753
No 136
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=35.03 E-value=2e+02 Score=22.92 Aligned_cols=76 Identities=8% Similarity=-0.039 Sum_probs=42.3
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCC--CC--chHHHHHHHHHHHHHhhhcccCCC
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEH--LV--AAAYEDSWAALKWVASHFKISAHG 134 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~--~~--p~~l~D~~~al~wl~~~~~~~~~g 134 (151)
.+.+++|-...|. ...++..+..++|+.|+.++=...|.. .. |...++.....+.++++-+
T Consensus 111 ~~~kvvvD~~~G~----------~~~~~~~ll~~lg~~v~~~n~~~d~~F~~~~p~p~~~~~l~~l~~~v~~~~a----- 175 (355)
T cd03084 111 KKFKVVVDSVNGV----------GGPIAPQLLEKLGAEVIPLNCEPDGNFGNINPDPGSETNLKQLLAVVKAEKA----- 175 (355)
T ss_pred CCCEEEEECCCch----------HHHHHHHHHHHcCCcEEEEcCcCCCCCCCCCCCCCchhhHHHHHHHHHhcCC-----
Confidence 4667777764443 133555677778988877664333321 11 2223444445556665533
Q ss_pred CCccccCCCCCCceee
Q 042415 135 YETWLNTRANFTCVFT 150 (151)
Q Consensus 135 gd~~~~~~~D~~rv~l 150 (151)
|-...+..|-+|+.+
T Consensus 176 -dlG~a~DgDgDRl~~ 190 (355)
T cd03084 176 -DFGVAFDGDADRLIV 190 (355)
T ss_pred -CEEEEEcCCCceeEE
Confidence 344566788888875
No 137
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=32.56 E-value=3.3e+02 Score=23.54 Aligned_cols=81 Identities=12% Similarity=0.087 Sum_probs=49.7
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCC-CCC-------------chHHHHHHHHHHHH
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPE-HLV-------------AAAYEDSWAALKWV 124 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~-~~~-------------p~~l~D~~~al~wl 124 (151)
...|+.|+|-|-|=....... .-......+|++.|+.|+.++.|.--+ +++ -++|.|+...++-+
T Consensus 84 ~~gPiFLmIGGEgp~~~~wv~-~~~~~~~~~AkkfgA~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~ 162 (514)
T KOG2182|consen 84 PGGPIFLMIGGEGPESDKWVG-NENLTWLQWAKKFGATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAM 162 (514)
T ss_pred CCCceEEEEcCCCCCCCCccc-cCcchHHHHHHHhCCeeEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHH
Confidence 577898888776644311110 112234678999999999999886421 122 35788888887776
Q ss_pred HhhhcccCCCC-CccccCCC
Q 042415 125 ASHFKISAHGY-ETWLNTRA 143 (151)
Q Consensus 125 ~~~~~~~~~gg-d~~~~~~~ 143 (151)
..... +.- .+|-.+++
T Consensus 163 n~k~n---~~~~~~WitFGg 179 (514)
T KOG2182|consen 163 NAKFN---FSDDSKWITFGG 179 (514)
T ss_pred HhhcC---CCCCCCeEEECC
Confidence 65432 222 26765554
No 138
>PLN02371 phosphoglucosamine mutase family protein
Probab=32.55 E-value=78 Score=27.52 Aligned_cols=75 Identities=7% Similarity=-0.069 Sum_probs=41.7
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCCCCc------hHHHHHHHHHHHHHhhhcccC
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEHLVA------AAYEDSWAALKWVASHFKISA 132 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~~~p------~~l~D~~~al~wl~~~~~~~~ 132 (151)
.+..+++..+.|. . ..++..+..++|+.++ +.-...|...|| ..-+......+.++++-+
T Consensus 262 ~~lkIvvD~~nGa-----g-----~~~~~~lL~~LG~~v~-~~~~~~pDg~Fp~~~P~P~~~~~l~~l~~~v~~~~a--- 327 (583)
T PLN02371 262 EGFKIVVDAGNGA-----G-----GFFAEKVLEPLGADTS-GSLFLEPDGMFPNHIPNPEDKAAMSATTQAVLANKA--- 327 (583)
T ss_pred CCCEEEEeCCCCc-----h-----HHHHHHHHHHcCCCeE-eeccCCCCCCCCCcCCCCCCHHHHHHHHHHHHhcCC---
Confidence 3566776654433 1 2355677788899877 444445555442 212333334445554433
Q ss_pred CCCCccccCCCCCCceee
Q 042415 133 HGYETWLNTRANFTCVFT 150 (151)
Q Consensus 133 ~ggd~~~~~~~D~~rv~l 150 (151)
|-...+..|.+|+.+
T Consensus 328 ---DlGia~DgDaDR~~v 342 (583)
T PLN02371 328 ---DLGIIFDTDVDRSAV 342 (583)
T ss_pred ---CEEEEECCCccceeE
Confidence 455567788888865
No 139
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=32.28 E-value=1.3e+02 Score=22.96 Aligned_cols=45 Identities=18% Similarity=0.427 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCcEEEEEcCCCC--CCCCCchHHHHHHHHHHHHHhhh
Q 042415 84 NYIGSLSAKANVIVVSIDYRLA--PEHLVAAAYEDSWAALKWVASHF 128 (151)
Q Consensus 84 ~~~~~la~~~g~~vv~v~YRla--p~~~~p~~l~D~~~al~wl~~~~ 128 (151)
.....+.+++|+...-+.+... |....|.+..+=..||+|+++|.
T Consensus 45 ~~va~lL~~sgl~y~HL~~~~~~~~~~~~~rg~~qRn~AL~~ir~~~ 91 (223)
T cd00218 45 PLVAELLRRSGLMYTHLNAKTPSDPTWLKPRGVEQRNLALRWIREHL 91 (223)
T ss_pred HHHHHHHHHcCCceEEeccCCCCCcccCCcccHHHHHHHHHHHHhcc
Confidence 4556777788987777777655 44556788999999999999995
No 140
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=31.85 E-value=19 Score=26.69 Aligned_cols=12 Identities=33% Similarity=0.631 Sum_probs=6.4
Q ss_pred CceEEEEEeCCc
Q 042415 60 TKSSLFYYHGGG 71 (151)
Q Consensus 60 ~~Pvvv~iHGGg 71 (151)
+++-||.+||.|
T Consensus 3 ~k~riLcLHG~~ 14 (212)
T PF03959_consen 3 RKPRILCLHGYG 14 (212)
T ss_dssp ---EEEEE--TT
T ss_pred CCceEEEeCCCC
Confidence 568899999987
No 141
>COG3150 Predicted esterase [General function prediction only]
Probab=31.70 E-value=1.1e+02 Score=22.66 Aligned_cols=55 Identities=20% Similarity=0.192 Sum_probs=28.5
Q ss_pred EEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCCCCch-HHHHHHHHHHHHH
Q 042415 64 LFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEHLVAA-AYEDSWAALKWVA 125 (151)
Q Consensus 64 vv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~~~p~-~l~D~~~al~wl~ 125 (151)
|||+|| |-+ |.. .+...+ +-...+-.+-.++|+.---.++|+ +++.+..++.-..
T Consensus 2 ilYlHG--FnS-SP~--shka~l--~~q~~~~~~~~i~y~~p~l~h~p~~a~~ele~~i~~~~ 57 (191)
T COG3150 2 ILYLHG--FNS-SPG--SHKAVL--LLQFIDEDVRDIEYSTPHLPHDPQQALKELEKAVQELG 57 (191)
T ss_pred eEEEec--CCC-Ccc--cHHHHH--HHHHHhccccceeeecCCCCCCHHHHHHHHHHHHHHcC
Confidence 899998 554 444 243322 222224456677787643445554 3444444444333
No 142
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=30.93 E-value=64 Score=25.58 Aligned_cols=12 Identities=17% Similarity=-0.011 Sum_probs=10.4
Q ss_pred CCcEEEEEcCCC
Q 042415 93 ANVIVVSIDYRL 104 (151)
Q Consensus 93 ~g~~vv~v~YRl 104 (151)
.++.|+++|+|=
T Consensus 71 ~~~~vi~~D~~G 82 (351)
T TIGR01392 71 DRYFVVCSNVLG 82 (351)
T ss_pred CceEEEEecCCC
Confidence 389999999984
No 143
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=29.29 E-value=1.3e+02 Score=24.30 Aligned_cols=44 Identities=9% Similarity=0.028 Sum_probs=23.8
Q ss_pred CceEEEEEeCCccccCCCC-------Cc-chHHHHH---HHHhcCCcEEEEEcCCC
Q 042415 60 TKSSLFYYHGGGLFMGSPF-------CS-TYHNYIG---SLSAKANVIVVSIDYRL 104 (151)
Q Consensus 60 ~~Pvvv~iHGGg~~~g~~~-------~~-~~~~~~~---~la~~~g~~vv~v~YRl 104 (151)
..|.||++||-+--.-... .. .+...+. .+.. .++.|+++|.+=
T Consensus 47 ~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~-~~~~vi~~Dl~G 101 (379)
T PRK00175 47 RSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDT-DRYFVICSNVLG 101 (379)
T ss_pred CCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCc-cceEEEeccCCC
Confidence 3589999999874322100 00 1122111 2212 389999999864
No 144
>PF10021 DUF2263: Uncharacterized protein conserved in bacteria (DUF2263); InterPro: IPR019261 This domain, found in various hypothetical bacterial and eukaryotic proteins, has no known function. ; PDB: 3SIJ_A 3SIG_A 3SII_A 3SIH_A.
Probab=29.25 E-value=40 Score=23.83 Aligned_cols=20 Identities=25% Similarity=0.539 Sum_probs=11.6
Q ss_pred CceEEEEE-----eCCccccCCCCC
Q 042415 60 TKSSLFYY-----HGGGLFMGSPFC 79 (151)
Q Consensus 60 ~~Pvvv~i-----HGGg~~~g~~~~ 79 (151)
..++||.+ -||||..|...+
T Consensus 76 ~~v~VLNfAs~~~PGGG~~~Ga~AQ 100 (148)
T PF10021_consen 76 GKVAVLNFASAKNPGGGFLNGARAQ 100 (148)
T ss_dssp S--EEEEE--SSSTTTTGGGT--SH
T ss_pred CCeEEEeccCcCCCCCCcccCcchh
Confidence 44555554 599999998764
No 145
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=28.90 E-value=1.8e+02 Score=22.28 Aligned_cols=49 Identities=18% Similarity=0.254 Sum_probs=27.0
Q ss_pred EEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEc------CCCCCCCCCchHHHHHHHHHHHHHhhh
Q 042415 64 LFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSID------YRLAPEHLVAAAYEDSWAALKWVASHF 128 (151)
Q Consensus 64 vv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~------YRlap~~~~p~~l~D~~~al~wl~~~~ 128 (151)
+|.+||||- +...++++.|+..-.++ +|..+ +..++.+..|+.-+...+
T Consensus 27 ~VlVHGgg~------------~i~~~~~~~gi~~~~~~~~~G~~~Rvt~----~~~l~~~~~a~~~ln~~i 81 (257)
T cd04251 27 LIVVHGGGN------------YVNEYLKRLGVEPKFVTSPSGIRSRYTD----KETLEVFVMVMGLINKKI 81 (257)
T ss_pred EEEECCCHH------------HHHHHHHHcCCCcEEEeCCCCCccccCC----HHHHHHHHHHHHHHHHHH
Confidence 678999984 22334555565443343 35544 456666666665444443
No 146
>PRK15000 peroxidase; Provisional
Probab=28.75 E-value=80 Score=23.26 Aligned_cols=43 Identities=12% Similarity=0.292 Sum_probs=26.9
Q ss_pred CCceEEEEEeCCccccCCCCC-cchHHHHHHHHhcCCcEEEEEcC
Q 042415 59 QTKSSLFYYHGGGLFMGSPFC-STYHNYIGSLSAKANVIVVSIDY 102 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~-~~~~~~~~~la~~~g~~vv~v~Y 102 (151)
+..++||+||-+.|...-... ..+......+..+ |+.|+.+..
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~-g~~vigvS~ 76 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR-GVEVVGVSF 76 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEC
Confidence 356999999999986555431 1223333455444 887777763
No 147
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=28.22 E-value=1.1e+02 Score=23.81 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=23.1
Q ss_pred CceEEEEEeCCccccCCCCC--cchHHHHHHHHhcCCcEEEE
Q 042415 60 TKSSLFYYHGGGLFMGSPFC--STYHNYIGSLSAKANVIVVS 99 (151)
Q Consensus 60 ~~Pvvv~iHGGg~~~g~~~~--~~~~~~~~~la~~~g~~vv~ 99 (151)
..+.++.+|||++. .+.. +.|...++.+..+ |+.++.
T Consensus 177 ~~~~i~~~~~~s~~--~k~Wp~e~~a~li~~l~~~-~~~ivl 215 (322)
T PRK10964 177 AGPYLVFLHATTRD--DKHWPEAHWRELIGLLAPS-GLRIKL 215 (322)
T ss_pred CCCeEEEEeCCCcc--cccCCHHHHHHHHHHHHHC-CCeEEE
Confidence 45678889999863 3332 2455666777654 776554
No 148
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=28.19 E-value=1.4e+02 Score=22.82 Aligned_cols=31 Identities=19% Similarity=0.105 Sum_probs=23.5
Q ss_pred EEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCC
Q 042415 64 LFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYR 103 (151)
Q Consensus 64 vv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YR 103 (151)
=|+|-|+|-+ ...+..+|..+|+.|..+|-|
T Consensus 102 ~L~IfGaG~v---------a~~la~la~~lGf~V~v~D~R 132 (246)
T TIGR02964 102 HVVLFGAGHV---------GRALVRALAPLPCRVTWVDSR 132 (246)
T ss_pred EEEEECCcHH---------HHHHHHHHhcCCCEEEEEeCC
Confidence 4666677732 346678899999999999988
No 149
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=27.87 E-value=1.5e+02 Score=17.96 Aligned_cols=62 Identities=15% Similarity=-0.009 Sum_probs=33.1
Q ss_pred EEEEeCCccccCCCCCcchHHHHHHHHhcCCc--EEE-EEcCCCCCCCCCch------HHHHHHHHHHHHHhh
Q 042415 64 LFYYHGGGLFMGSPFCSTYHNYIGSLSAKANV--IVV-SIDYRLAPEHLVAA------AYEDSWAALKWVASH 127 (151)
Q Consensus 64 vv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~--~vv-~v~YRlap~~~~p~------~l~D~~~al~wl~~~ 127 (151)
.+|..|++|-.-+.+. +.-.+..+++.+|+ .|+ +-+-..+|....|. .+.|...-++||.++
T Consensus 2 ~L~~~~~~~g~ps~sp--~clk~~~~Lr~~~~~~~v~~~~n~~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 2 ELHVWGGDWGLPSVDP--ECLAVLAYLKFAGAPLKVVPSNNPWRSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred EEEEECCCCCCCcCCH--HHHHHHHHHHcCCCCEEEEecCCCCCCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 4788899886655541 22222344444453 333 23456778777774 233555555565543
No 150
>PF10959 DUF2761: Protein of unknown function (DUF2761); InterPro: IPR024249 Members of this family of proteins are annotated as KleF [,]. Their function is known.
Probab=27.52 E-value=20 Score=22.79 Aligned_cols=21 Identities=19% Similarity=0.586 Sum_probs=14.8
Q ss_pred HHHhhhcccCCCCCcc-ccCCCCC
Q 042415 123 WVASHFKISAHGYETW-LNTRANF 145 (151)
Q Consensus 123 wl~~~~~~~~~ggd~~-~~~~~D~ 145 (151)
|...+++ ..|-||| |..++||
T Consensus 34 wysaqse--ewgldpwrlvegvdp 55 (95)
T PF10959_consen 34 WYSAQSE--EWGLDPWRLVEGVDP 55 (95)
T ss_pred eecccch--hcCCChhhhhcccCc
Confidence 5566666 7888997 4566665
No 151
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=27.06 E-value=45 Score=25.22 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=22.0
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCc--EEEEEcCCC
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANV--IVVSIDYRL 104 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~--~vv~v~YRl 104 (151)
+...++||+||=....... -.-+.++....++ .++...+.-
T Consensus 16 ~~~~vlvfVHGyn~~f~~a-----~~r~aql~~~~~~~~~~i~FsWPS 58 (233)
T PF05990_consen 16 PDKEVLVFVHGYNNSFEDA-----LRRAAQLAHDLGFPGVVILFSWPS 58 (233)
T ss_pred CCCeEEEEEeCCCCCHHHH-----HHHHHHHHHHhCCCceEEEEEcCC
Confidence 5678999999954321111 1122345555554 455555543
No 152
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=26.81 E-value=1.2e+02 Score=23.49 Aligned_cols=40 Identities=10% Similarity=-0.059 Sum_probs=25.3
Q ss_pred CceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEE
Q 042415 60 TKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSI 100 (151)
Q Consensus 60 ~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v 100 (151)
..|.|++.||+++..-.-..+.+..+++.+..+ ++.+|.+
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~-~~~~vl~ 217 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLAR-GLQIVLP 217 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHC-CCeEEEe
Confidence 468899999999743222222455666777665 7766543
No 153
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=26.19 E-value=89 Score=22.91 Aligned_cols=11 Identities=27% Similarity=0.712 Sum_probs=7.7
Q ss_pred EEEEeCCccccCC
Q 042415 64 LFYYHGGGLFMGS 76 (151)
Q Consensus 64 vv~iHGGg~~~g~ 76 (151)
|+|+|| |.+..
T Consensus 2 ilYlHG--F~Ssp 12 (187)
T PF05728_consen 2 ILYLHG--FNSSP 12 (187)
T ss_pred eEEecC--CCCCC
Confidence 799999 54433
No 154
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=25.85 E-value=81 Score=28.07 Aligned_cols=65 Identities=17% Similarity=0.121 Sum_probs=47.3
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCCC-----------CchHHHHHHHHHHHHHhh
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEHL-----------VAAAYEDSWAALKWVASH 127 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~~-----------~p~~l~D~~~al~wl~~~ 127 (151)
+..|.+||.|||-=+.-.+. +...-..|.. .|.+.+-.+-|=+-|.- --..+.|-.++.++|.++
T Consensus 468 g~~P~LLygYGay~isl~p~---f~~srl~lld-~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~AeyLve~ 543 (712)
T KOG2237|consen 468 GSKPLLLYGYGAYGISLDPS---FRASRLSLLD-RGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIACAEYLVEN 543 (712)
T ss_pred CCCceEEEEecccceeeccc---cccceeEEEe-cceEEEEEeeccCcccccchhhccchhhhcccHHHHHHHHHHHHHc
Confidence 58899999999976655553 3222223444 59999999988775542 345899999999999986
No 155
>PF04317 DUF463: YcjX-like family, DUF463; InterPro: IPR007413 Some members of this family are thought to possess an ATP-binding domain towards their N terminus.
Probab=25.55 E-value=1.5e+02 Score=25.08 Aligned_cols=53 Identities=25% Similarity=0.282 Sum_probs=39.5
Q ss_pred HHHHHHhcCCcEEEEEcCCCCCCCCCchHHHHHHHHHHHHHhhhcccCCCCCccccC
Q 042415 85 YIGSLSAKANVIVVSIDYRLAPEHLVAAAYEDSWAALKWVASHFKISAHGYETWLNT 141 (151)
Q Consensus 85 ~~~~la~~~g~~vv~v~YRlap~~~~p~~l~D~~~al~wl~~~~~~~~~ggd~~~~~ 141 (151)
|.+...++.+=.||.||- |.+-+..|++++|...|+.-|.+.. .||-+.|+..
T Consensus 248 Fyr~hFar~DRQIVLVD~-L~aLn~G~~a~~Dm~~AL~~il~sF---ryG~~~~L~r 300 (443)
T PF04317_consen 248 FYRDHFARFDRQIVLVDC-LQALNAGPAAFEDMRQALAQILQSF---RYGRSSLLRR 300 (443)
T ss_pred HHHHHHhhhCceEEEEee-chhhhcCHHHHHHHHHHHHHHHHhc---CCCcchHHHH
Confidence 334444455656666664 6788899999999999999999888 5787777653
No 156
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=25.52 E-value=1e+02 Score=21.13 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=25.3
Q ss_pred CCceEEEEEeCCccccCCCCC-cchHHHHHHHHhcCCcEEEEEcC
Q 042415 59 QTKSSLFYYHGGGLFMGSPFC-STYHNYIGSLSAKANVIVVSIDY 102 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~-~~~~~~~~~la~~~g~~vv~v~Y 102 (151)
+..++||+|..+.|....... ..+......+..+ |+.++++..
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~-~v~vi~Is~ 72 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA-GVVVLGIST 72 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcC
Confidence 556899999877665433321 1122333444444 899999975
No 157
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=25.45 E-value=3.3e+02 Score=24.17 Aligned_cols=65 Identities=15% Similarity=0.138 Sum_probs=47.7
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCC-----------CCchHHHHHHHHHHHHHhh
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEH-----------LVAAAYEDSWAALKWVASH 127 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~-----------~~p~~l~D~~~al~wl~~~ 127 (151)
.+.|++||-.||-=+.-.. .|.....-...+ |-+.|..|-|=+-|. .--...+|-.++..+|.++
T Consensus 419 d~~pTll~aYGGF~vsltP---~fs~~~~~WLer-Gg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~r 494 (648)
T COG1505 419 DENPTLLYAYGGFNISLTP---RFSGSRKLWLER-GGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKR 494 (648)
T ss_pred CCCceEEEeccccccccCC---ccchhhHHHHhc-CCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHHHHh
Confidence 4689999999987665554 455555444555 888888998977554 2345789999999998865
No 158
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=25.00 E-value=2.6e+02 Score=21.29 Aligned_cols=47 Identities=13% Similarity=0.019 Sum_probs=25.9
Q ss_pred EEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEE-EcCCCCCCCCCchHHHHHHHHHHHHHhh
Q 042415 65 FYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVS-IDYRLAPEHLVAAAYEDSWAALKWVASH 127 (151)
Q Consensus 65 v~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~-v~YRlap~~~~p~~l~D~~~al~wl~~~ 127 (151)
|.+||||- ++..++++.|...-. =.+|..+ +..++.+..|+.-+...
T Consensus 32 VlVHGgg~------------~i~~~~~~~gi~~~~~~g~RvT~----~~~l~~v~~al~~vn~~ 79 (248)
T cd04252 32 IVVHGAGP------------QLNEELEAAGVEPEYVDGLRVTD----PETLAVARKVFLEENLK 79 (248)
T ss_pred EEEeCCCH------------HHHHHHHHcCCCcEeeCCcccCC----HHHHHHHHHHHHHHHHH
Confidence 78999983 223444444543222 2455555 46666676666544443
No 159
>TIGR02806 clostrip clostripain. Clostripain is a cysteine protease characterized from Clostridium histolyticum, and also known from Clostridium perfringens. It is a heterodimer processed from a single precursor polypeptide, specific for Arg-|-Xaa peptide bonds. The older term alpha-clostripain refers to the most active, most reduced form, rather than to the product of one of several different genes. Clostripain belongs to the peptidase family C11, or clostripain family (see pfam03415).
Probab=24.97 E-value=44 Score=28.33 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=13.5
Q ss_pred CCceEEEEEeCCcccc
Q 042415 59 QTKSSLFYYHGGGLFM 74 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~ 74 (151)
.+.-.|++-||+||.-
T Consensus 113 d~Y~LIiwnHG~GW~p 128 (476)
T TIGR02806 113 DKYMLIMANHGGGAKD 128 (476)
T ss_pred cceeEEEEeCCCCCcC
Confidence 4677899999999984
No 160
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=24.58 E-value=2.3e+02 Score=23.43 Aligned_cols=60 Identities=13% Similarity=0.019 Sum_probs=33.4
Q ss_pred HHHHHHhcCCcEEEEEcCCCCCC-CCCchH-HHHHHHHHHHHHhhhcccCCCCCccccCCCCCCceee
Q 042415 85 YIGSLSAKANVIVVSIDYRLAPE-HLVAAA-YEDSWAALKWVASHFKISAHGYETWLNTRANFTCVFT 150 (151)
Q Consensus 85 ~~~~la~~~g~~vv~v~YRlap~-~~~p~~-l~D~~~al~wl~~~~~~~~~ggd~~~~~~~D~~rv~l 150 (151)
.+..+..++|+.|+.++=..-|. ++-|.. -+....+.+.++++ |.|-.+.+..|.+|+.+
T Consensus 183 ~~~~ll~~lG~~v~~i~~~~d~~~~~~~~~~~~~l~~l~~~v~~~------~adlgia~DgDaDR~~v 244 (441)
T cd05805 183 VLPGLLSRLGCDVVILNARLDEDAPRTDTERQRSLDRLGRIVKAL------GADFGVIIDPNGERLIL 244 (441)
T ss_pred HHHHHHHHcCCEEEEEecccCCccCCCCccchhHHHHHHHHHHhC------CCCEEEEEcCCCCEEEE
Confidence 55677778899888776544443 222221 12223333334433 33555677788888875
No 161
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=24.24 E-value=2.2e+02 Score=21.77 Aligned_cols=43 Identities=16% Similarity=0.099 Sum_probs=27.6
Q ss_pred HHHHhcCCcEEEEEcCCCCCC-----CCCchHHHHHHHHHHHHHhhhc
Q 042415 87 GSLSAKANVIVVSIDYRLAPE-----HLVAAAYEDSWAALKWVASHFK 129 (151)
Q Consensus 87 ~~la~~~g~~vv~v~YRlap~-----~~~p~~l~D~~~al~wl~~~~~ 129 (151)
..++++.|+.+|..--+-.|. ..|+...++....++-..+.+.
T Consensus 113 ~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 160 (258)
T cd00423 113 APLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAAT 160 (258)
T ss_pred HHHHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHH
Confidence 356777787666655443332 3467778888777777777666
No 162
>COG4286 Uncharacterized conserved protein related to MYG1 family [Function unknown]
Probab=24.04 E-value=45 Score=26.40 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=17.5
Q ss_pred CCceEEEEEeCCccccCCCC
Q 042415 59 QTKSSLFYYHGGGLFMGSPF 78 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~ 78 (151)
..-|--+|+|-|||+.+.+.
T Consensus 274 sGIpGc~F~Ha~gFig~~kt 293 (306)
T COG4286 274 SGIPGCIFCHAGGFIGGNKT 293 (306)
T ss_pred cCCCCeEEEecccceecccc
Confidence 56788899999999998886
No 163
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=23.23 E-value=1.4e+02 Score=16.91 Aligned_cols=19 Identities=21% Similarity=0.099 Sum_probs=14.5
Q ss_pred HHHHHHhcCCcEEEEEcCC
Q 042415 85 YIGSLSAKANVIVVSIDYR 103 (151)
Q Consensus 85 ~~~~la~~~g~~vv~v~YR 103 (151)
+-.++...+|+.|+.|.|-
T Consensus 22 lk~r~L~~~G~~Vi~Ip~~ 40 (58)
T PF08373_consen 22 LKHRHLKALGYKVISIPYY 40 (58)
T ss_pred HHHHHHHHCCCEEEEecHH
Confidence 3356667789999999875
No 164
>PF14041 Lipoprotein_21: LppP/LprE lipoprotein
Probab=23.22 E-value=52 Score=20.98 Aligned_cols=41 Identities=20% Similarity=0.489 Sum_probs=23.1
Q ss_pred CceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCC
Q 042415 60 TKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRL 104 (151)
Q Consensus 60 ~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 104 (151)
..--+++||.|-|+.-.... .+ ..+..+ ..+=.-|.|.|+.
T Consensus 24 ~~~~vl~Fh~G~fiGt~t~~-p~-~~~~v~--~~~~~~V~V~Y~~ 64 (89)
T PF14041_consen 24 SPQQVLFFHDGEFIGTATPD-PY-GYIDVI--RSTDDTVTVQYRW 64 (89)
T ss_pred CCeEEEEEECCEEcccCCcc-cc-CceeEE--eeCCCEEEEEEEe
Confidence 33678999999998444332 22 112121 2344567778883
No 165
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=23.00 E-value=64 Score=21.64 Aligned_cols=16 Identities=13% Similarity=0.385 Sum_probs=14.1
Q ss_pred CCceEEEEEeCCcccc
Q 042415 59 QTKSSLFYYHGGGLFM 74 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~ 74 (151)
.+.|.+||+++|-|+.
T Consensus 81 ~~~PaLvf~R~g~~lG 96 (107)
T PF07449_consen 81 RRWPALVFFRDGRYLG 96 (107)
T ss_dssp TSSSEEEEEETTEEEE
T ss_pred ccCCeEEEEECCEEEE
Confidence 6899999999998764
No 166
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=22.85 E-value=1.6e+02 Score=19.88 Aligned_cols=44 Identities=9% Similarity=0.031 Sum_probs=28.7
Q ss_pred CCceEEEEEeCC------ccccCCCCCcchHHHHHHHHhcCC--cEEEEEcCCCC
Q 042415 59 QTKSSLFYYHGG------GLFMGSPFCSTYHNYIGSLSAKAN--VIVVSIDYRLA 105 (151)
Q Consensus 59 ~~~Pvvv~iHGG------g~~~g~~~~~~~~~~~~~la~~~g--~~vv~v~YRla 105 (151)
+..|++|+|+++ -|...-.. ..+.+..++.+.. +.++.++.--.
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~---~~P~l~~l~~~~~~~v~fv~Vdvd~~ 71 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVK---AEPVVREALKAAPEDCVFIYCDVGDR 71 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHh---hchhHHHHHHHCCCCCEEEEEEcCCc
Confidence 357999999997 56533332 2455666666543 78888887543
No 167
>PRK06852 aldolase; Validated
Probab=22.49 E-value=3.5e+02 Score=21.62 Aligned_cols=46 Identities=9% Similarity=0.012 Sum_probs=29.0
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCC
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRL 104 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRl 104 (151)
-..|+|+|.+-=|-.......+..-..+.+++.++|+-+|-+.|..
T Consensus 166 ~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~ 211 (304)
T PRK06852 166 HGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPK 211 (304)
T ss_pred hCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCC
Confidence 4678887554332222222222344566799999999999999973
No 168
>PTZ00445 p36-lilke protein; Provisional
Probab=22.45 E-value=70 Score=24.34 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=25.6
Q ss_pred EEEEEeCCccccCC---------CCCcchHHHHHHHHhcCCcEEEEEcCCC
Q 042415 63 SLFYYHGGGLFMGS---------PFCSTYHNYIGSLSAKANVIVVSIDYRL 104 (151)
Q Consensus 63 vvv~iHGGg~~~g~---------~~~~~~~~~~~~la~~~g~~vv~v~YRl 104 (151)
++|=+|-|||.... .. +.+..++..+- +.|+.|+.|.|.=
T Consensus 53 TlI~~HsgG~~~~~~~~~~~~~~~t-pefk~~~~~l~-~~~I~v~VVTfSd 101 (219)
T PTZ00445 53 TMITKHSGGYIDPDNDDIRVLTSVT-PDFKILGKRLK-NSNIKISVVTFSD 101 (219)
T ss_pred hhhhhhcccccCCCcchhhhhccCC-HHHHHHHHHHH-HCCCeEEEEEccc
Confidence 45668999998886 22 12334444443 4599888888873
No 169
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=22.43 E-value=1.3e+02 Score=19.74 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=27.8
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCC
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYR 103 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YR 103 (151)
+..+++|+|. +.|...... ..+.+..+..+.++.|+.++..
T Consensus 24 ~gk~vvv~F~-a~~C~~C~~---~~~~l~~l~~~~~~~vv~v~~~ 64 (127)
T cd03010 24 KGKPYLLNVW-ASWCAPCRE---EHPVLMALARQGRVPIYGINYK 64 (127)
T ss_pred CCCEEEEEEE-cCcCHHHHH---HHHHHHHHHHhcCcEEEEEECC
Confidence 4678999998 566544432 2455667777767889988864
No 170
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=22.37 E-value=62 Score=19.37 Aligned_cols=11 Identities=27% Similarity=0.615 Sum_probs=6.1
Q ss_pred CCceEEEEEeC
Q 042415 59 QTKSSLFYYHG 69 (151)
Q Consensus 59 ~~~Pvvv~iHG 69 (151)
+++|+|+..||
T Consensus 41 ~~k~pVll~HG 51 (63)
T PF04083_consen 41 KKKPPVLLQHG 51 (63)
T ss_dssp TT--EEEEE--
T ss_pred CCCCcEEEECC
Confidence 67899999998
No 171
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=22.15 E-value=3.8e+02 Score=21.48 Aligned_cols=65 Identities=11% Similarity=0.137 Sum_probs=35.5
Q ss_pred CceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCC----CCCchHHHHHHHHHHHHHhh
Q 042415 60 TKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPE----HLVAAAYEDSWAALKWVASH 127 (151)
Q Consensus 60 ~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~----~~~p~~l~D~~~al~wl~~~ 127 (151)
..-+||||-| ..-|-... .|-.-+.......++.|+.+.-+-+=. ...-.=.+|+.++++++++.
T Consensus 32 ~~~~llfIGG--LtDGl~tv-pY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~SL~~D~~eI~~~v~ylr~~ 100 (303)
T PF08538_consen 32 APNALLFIGG--LTDGLLTV-PYLPDLAEALEETGWSLFQVQLSSSYSGWGTSSLDRDVEEIAQLVEYLRSE 100 (303)
T ss_dssp SSSEEEEE----TT--TT-S-TCHHHHHHHHT-TT-EEEEE--GGGBTTS-S--HHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECC--CCCCCCCC-chHHHHHHHhccCCeEEEEEEecCccCCcCcchhhhHHHHHHHHHHHHHHh
Confidence 4457888855 33333332 233333333455699999999886522 24456788999999999987
No 172
>PLN02200 adenylate kinase family protein
Probab=21.82 E-value=2.1e+02 Score=21.56 Aligned_cols=36 Identities=14% Similarity=0.119 Sum_probs=27.0
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEc
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSID 101 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~ 101 (151)
.+.|.+|++.|.- |+.. ...++.|+.+.|+..++.+
T Consensus 40 ~~~~~ii~I~G~P---GSGK----sT~a~~La~~~g~~his~g 75 (234)
T PLN02200 40 EKTPFITFVLGGP---GSGK----GTQCEKIVETFGFKHLSAG 75 (234)
T ss_pred CCCCEEEEEECCC---CCCH----HHHHHHHHHHhCCeEEEcc
Confidence 5678889988865 5543 3467889999999888873
No 173
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=21.52 E-value=1.1e+02 Score=16.37 Aligned_cols=21 Identities=24% Similarity=0.087 Sum_probs=17.7
Q ss_pred CCCchHHHHHHHHHHHHHhhh
Q 042415 108 HLVAAAYEDSWAALKWVASHF 128 (151)
Q Consensus 108 ~~~p~~l~D~~~al~wl~~~~ 128 (151)
..|++++.|...|+.+-.+..
T Consensus 15 e~f~qA~~D~~~aL~i~~~l~ 35 (38)
T PF10516_consen 15 ENFEQAIEDYEKALEIQEELL 35 (38)
T ss_pred ccHHHHHHHHHHHHHHHHHhc
Confidence 478999999999999877654
No 174
>PF01112 Asparaginase_2: Asparaginase; InterPro: IPR000246 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Threonine peptidases are characterised by a threonine nucleophile at the N terminus of the mature enzyme. The threonine peptidases belong to clan PB or are unassigned, clan T-. The type example for this clan is the archaean proteasome beta component of Thermoplasma acidophilum. This group of sequences have a signature that places them in MEROPS peptidase family T2 (clan PB(T)). The glycosylasparaginases (3.5.1.26 from EC) are threonine peptidases. Also in this family is L-asparaginase (3.5.1.1 from EC), which catalyses the following reaction: L-asparagine + H2O = L-aspartate + NH3 Glycosylasparaginase catalyses: N4-(beta-N-acetyl-D-glucosaminyl)-L-asparagine + H(2)O = N-acetyl-beta-glucosaminylamine + L-aspartate cleaving the GlcNAc-Asn bond that links oligosaccharides to asparagine in N-linked glycoproteins. The enzyme is composed of two non-identical alpha/beta subunits joined by strong non-covalent forces and has one glycosylation site located in the alpha subunit [] and plays a major role in the degradation of glycoproteins.; GO: 0016787 hydrolase activity; PDB: 1APY_D 1APZ_C 2GEZ_E 2GL9_B 2GAC_D 2GAW_C 1AYY_A 1P4V_C 9GAF_A 1P4K_A ....
Probab=21.38 E-value=36 Score=27.31 Aligned_cols=55 Identities=13% Similarity=0.073 Sum_probs=28.8
Q ss_pred EEEEeCCccccCCC----CCcchHHHHHHHHhcCCcEEEEEcCCCCCCCCCchHHHHHHHHHHHHHhhh
Q 042415 64 LFYYHGGGLFMGSP----FCSTYHNYIGSLSAKANVIVVSIDYRLAPEHLVAAAYEDSWAALKWVASHF 128 (151)
Q Consensus 64 vv~iHGGg~~~g~~----~~~~~~~~~~~la~~~g~~vv~v~YRlap~~~~p~~l~D~~~al~wl~~~~ 128 (151)
+|-||||++..... ....+...++..+.+ ++ ++.- .-..+++-+..|++.|.++-
T Consensus 4 ~iivHGGAg~~~~~~~~~~~~~~~~~~~~a~~~-~~-------~~L~--~g~~aldAV~~Av~~LEd~p 62 (319)
T PF01112_consen 4 AIIVHGGAGTISDSLPIERETWYREGLRDALEA-GY-------EVLK--KGGSALDAVEAAVRVLEDDP 62 (319)
T ss_dssp EEEEEEEEESE-TTTSHHCCCHHHHHHHHHHHH-HH-------HHHH--TT--HHHHHHHHHHHHHHST
T ss_pred EEEEECCCCCCccccCHHHHHHHHHHHHHHHHH-HH-------HHHH--cCCCHHHHHHHHHHHHHcCC
Confidence 34499999887773 111122344444443 22 2211 22356777778888887764
No 175
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=21.37 E-value=2.2e+02 Score=22.08 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=32.4
Q ss_pred CCceEEEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEcCCCCCCCCCchH
Q 042415 59 QTKSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSIDYRLAPEHLVAAA 113 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~YRlap~~~~p~~ 113 (151)
...++||+|..+ |..-.. ...+.+..++.+.|+.|+.|+..-.+...||..
T Consensus 165 ~~k~~Lv~F~As-wCp~C~---~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~ 215 (271)
T TIGR02740 165 AKKSGLFFFFKS-DCPYCH---QQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNA 215 (271)
T ss_pred cCCeEEEEEECC-CCccHH---HHhHHHHHHHHHcCcEEEEEeCCCCccccCCcc
Confidence 567899999886 532222 345677889988887776665543333335544
No 176
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=20.93 E-value=1.8e+02 Score=20.07 Aligned_cols=42 Identities=21% Similarity=0.080 Sum_probs=24.3
Q ss_pred ceEEEEEeCCccccCCCCCcchHHHHHHHHhcCC-cEEEEEcCCCCCCC
Q 042415 61 KSSLFYYHGGGLFMGSPFCSTYHNYIGSLSAKAN-VIVVSIDYRLAPEH 108 (151)
Q Consensus 61 ~Pvvv~iHGGg~~~g~~~~~~~~~~~~~la~~~g-~~vv~v~YRlap~~ 108 (151)
.|.++++||++...... ......+..... +.++.+|.| +-..
T Consensus 21 ~~~i~~~hg~~~~~~~~-----~~~~~~~~~~~~~~~~~~~d~~-g~g~ 63 (282)
T COG0596 21 GPPLVLLHGFPGSSSVW-----RPVFKVLPALAARYRVIAPDLR-GHGR 63 (282)
T ss_pred CCeEEEeCCCCCchhhh-----HHHHHHhhccccceEEEEeccc-CCCC
Confidence 45899999988433322 221122232211 899999999 5433
No 177
>PRK14320 glmM phosphoglucosamine mutase; Provisional
Probab=20.86 E-value=2.6e+02 Score=23.26 Aligned_cols=58 Identities=14% Similarity=0.037 Sum_probs=32.5
Q ss_pred HHHHHHHhcCCcEEEEEcCCCCCCCC----CchHHHHHHHHHHHHHhhhcccCCCCCccccCCCCCCceee
Q 042415 84 NYIGSLSAKANVIVVSIDYRLAPEHL----VAAAYEDSWAALKWVASHFKISAHGYETWLNTRANFTCVFT 150 (151)
Q Consensus 84 ~~~~~la~~~g~~vv~v~YRlap~~~----~p~~l~D~~~al~wl~~~~~~~~~ggd~~~~~~~D~~rv~l 150 (151)
..+..+..++|+.|+.++=...+.++ -|..+++.. +.++++ |.|-...+..|.+|+.+
T Consensus 186 ~~~~~ll~~lg~~v~~i~~~~dg~~~~~~~~~~~l~~l~---~~v~~~------~adlGia~DgDaDR~~~ 247 (443)
T PRK14320 186 HNFEALLDKFGINYVSIASNPDGLNINVGCGATCVSNIK---KAVKEQ------KADLGISLDGDADRIII 247 (443)
T ss_pred HHHHHHHHHcCCcEEEECCcCCCCCCCCCCchHhHHHHH---HHHHHc------CCCEEEEECCCCceEEE
Confidence 35567778889888877633222221 123333333 333333 33556677889899876
No 178
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=20.75 E-value=3e+02 Score=19.05 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=10.9
Q ss_pred CCceEEEEEeCCc
Q 042415 59 QTKSSLFYYHGGG 71 (151)
Q Consensus 59 ~~~Pvvv~iHGGg 71 (151)
.+.|.|+-|||..
T Consensus 50 p~KpLVlSfHG~t 62 (127)
T PF06309_consen 50 PRKPLVLSFHGWT 62 (127)
T ss_pred CCCCEEEEeecCC
Confidence 5789999999954
No 179
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=20.46 E-value=1.7e+02 Score=21.01 Aligned_cols=42 Identities=14% Similarity=0.333 Sum_probs=26.2
Q ss_pred CCceEEEEEeCCccccCCCCC-cchHHHHHHHHhcCCcEEEEEc
Q 042415 59 QTKSSLFYYHGGGLFMGSPFC-STYHNYIGSLSAKANVIVVSID 101 (151)
Q Consensus 59 ~~~Pvvv~iHGGg~~~g~~~~-~~~~~~~~~la~~~g~~vv~v~ 101 (151)
...+|||||+=..|.-|-... ..+......+ .+.|++|+-|.
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef-~~~~a~V~GIS 71 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEF-EKLGAVVLGIS 71 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHH-HhCCCEEEEEe
Confidence 455999999999998885432 1122222333 44588887664
No 180
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=20.31 E-value=64 Score=27.16 Aligned_cols=12 Identities=25% Similarity=0.598 Sum_probs=11.0
Q ss_pred CCceEEEEEeCC
Q 042415 59 QTKSSLFYYHGG 70 (151)
Q Consensus 59 ~~~Pvvv~iHGG 70 (151)
+..|++||++||
T Consensus 75 ~~~Pl~lwlnGG 86 (462)
T PTZ00472 75 PEAPVLLWMTGG 86 (462)
T ss_pred CCCCEEEEECCC
Confidence 678999999999
No 181
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=20.06 E-value=2.5e+02 Score=21.70 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCCcEEEEEcCCCC----CC------------CCCchHHHHHHHHHHHHHhhh
Q 042415 83 HNYIGSLSAKANVIVVSIDYRLA----PE------------HLVAAAYEDSWAALKWVASHF 128 (151)
Q Consensus 83 ~~~~~~la~~~g~~vv~v~YRla----p~------------~~~p~~l~D~~~al~wl~~~~ 128 (151)
...+..+|.. |+.|+.+||=.+ |+ +.-|....|+.+.+.||+.|.
T Consensus 57 r~~Adk~A~~-Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g 117 (242)
T KOG3043|consen 57 REGADKVALN-GYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHG 117 (242)
T ss_pred HHHHHHHhcC-CcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcC
Confidence 4455677776 999999998776 22 345678999999999999776
No 182
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=20.04 E-value=2.9e+02 Score=21.20 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=23.9
Q ss_pred EEEEeCCccccCCCCCcchHHHHHHHHhcCCcEEEEEc------CCCCCCCCCchHHHHHHHHHHHHHh
Q 042415 64 LFYYHGGGLFMGSPFCSTYHNYIGSLSAKANVIVVSID------YRLAPEHLVAAAYEDSWAALKWVAS 126 (151)
Q Consensus 64 vv~iHGGg~~~g~~~~~~~~~~~~~la~~~g~~vv~v~------YRlap~~~~p~~l~D~~~al~wl~~ 126 (151)
+|-+||||- +...++.+.|...-.++ .|..+ +..++.+..++.-+..
T Consensus 31 ~VlVHGgg~------------~i~~~~~~~gi~~~~~~~~~g~~~rvt~----~~~l~~~~~a~~~ln~ 83 (268)
T PRK14058 31 VVLVHGGSD------------EVNELLERLGIEPRFVTSPSGVTSRYTD----RETLEVFIMAMALINK 83 (268)
T ss_pred EEEEeCCHH------------HHHHHHHHcCCCceEEeCCCCCceEeCC----HHHHHHHHHHHHHHHH
Confidence 457888873 22334444454333333 55544 4555665656544333
Done!