Query 042417
Match_columns 249
No_of_seqs 193 out of 1484
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 06:00:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02188 polygalacturonase/gly 100.0 1.1E-57 2.5E-62 415.7 29.3 243 1-249 36-404 (404)
2 PLN02155 polygalacturonase 100.0 5.7E-57 1.2E-61 409.6 28.0 241 1-249 27-392 (394)
3 PLN03003 Probable polygalactur 100.0 1.6E-56 3.5E-61 410.3 29.6 244 1-249 23-389 (456)
4 PLN03010 polygalacturonase 100.0 4.2E-56 9E-61 404.9 30.8 242 1-249 46-403 (409)
5 PLN02793 Probable polygalactur 100.0 2.7E-56 5.9E-61 410.9 29.1 241 1-249 52-423 (443)
6 PLN02218 polygalacturonase ADP 100.0 5E-55 1.1E-59 400.9 29.4 235 1-249 67-431 (431)
7 PF00295 Glyco_hydro_28: Glyco 100.0 1.6E-38 3.5E-43 284.5 18.9 183 47-239 94-324 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 1.8E-29 3.8E-34 235.1 17.7 146 1-153 82-369 (542)
9 PF12708 Pectate_lyase_3: Pect 99.7 3.4E-16 7.3E-21 131.9 19.0 120 1-122 1-140 (225)
10 TIGR03808 RR_plus_rpt_1 twin-a 99.7 1.1E-15 2.4E-20 139.2 14.4 118 2-122 38-208 (455)
11 PF00295 Glyco_hydro_28: Glyco 99.4 8.7E-12 1.9E-16 111.9 14.8 140 47-206 117-319 (326)
12 PLN02793 Probable polygalactur 99.4 3.3E-11 7.1E-16 112.0 18.3 99 47-153 202-330 (443)
13 PLN02218 polygalacturonase ADP 99.4 5.9E-11 1.3E-15 109.8 18.5 99 47-153 217-345 (431)
14 PLN02155 polygalacturonase 99.3 7.2E-11 1.6E-15 108.1 17.1 100 47-153 170-299 (394)
15 PLN02188 polygalacturonase/gly 99.3 8.8E-11 1.9E-15 107.9 17.4 101 47-153 180-310 (404)
16 PF03718 Glyco_hydro_49: Glyco 99.3 3.4E-11 7.4E-16 111.3 13.6 158 53-219 328-517 (582)
17 PLN03003 Probable polygalactur 99.2 5.8E-10 1.3E-14 103.4 17.5 99 47-153 163-291 (456)
18 TIGR03805 beta_helix_1 paralle 99.2 3E-10 6.4E-15 101.5 13.8 115 21-153 1-151 (314)
19 PLN03010 polygalacturonase 99.1 5.2E-09 1.1E-13 96.2 17.8 99 47-153 182-310 (409)
20 COG5434 PGU1 Endopygalactoruna 98.5 5E-07 1.1E-11 85.3 10.6 105 47-153 263-398 (542)
21 PF12541 DUF3737: Protein of u 97.9 0.0001 2.2E-09 63.3 10.5 55 50-114 35-89 (277)
22 PRK10123 wcaM putative colanic 97.9 0.00014 3E-09 63.4 10.4 31 2-44 35-65 (464)
23 PF12541 DUF3737: Protein of u 97.8 0.00047 1E-08 59.3 12.9 146 50-215 54-223 (277)
24 TIGR03805 beta_helix_1 paralle 97.7 0.0017 3.8E-08 58.1 15.7 72 47-122 79-157 (314)
25 COG3866 PelB Pectate lyase [Ca 97.7 0.0023 5.1E-08 56.1 14.6 104 8-115 51-165 (345)
26 PF05048 NosD: Periplasmic cop 97.6 0.0015 3.2E-08 55.7 12.2 82 35-122 7-106 (236)
27 PF13229 Beta_helix: Right han 97.5 0.00051 1.1E-08 53.8 7.9 65 48-117 3-67 (158)
28 smart00656 Amb_all Amb_all dom 97.2 0.0021 4.6E-08 53.4 8.4 48 69-116 32-81 (190)
29 PF07602 DUF1565: Protein of u 97.1 0.0082 1.8E-07 51.8 11.5 99 18-122 15-141 (246)
30 PF14592 Chondroitinas_B: Chon 97.0 0.0094 2E-07 55.1 11.3 93 17-115 3-142 (425)
31 smart00656 Amb_all Amb_all dom 96.6 0.19 4.1E-06 41.7 15.4 100 47-153 33-144 (190)
32 PF00544 Pec_lyase_C: Pectate 96.5 0.0081 1.8E-07 50.3 6.7 47 70-116 38-96 (200)
33 PLN02480 Probable pectinestera 96.5 0.086 1.9E-06 47.7 13.3 121 16-153 58-198 (343)
34 PF13229 Beta_helix: Right han 96.4 0.016 3.5E-07 45.1 7.6 64 47-116 25-88 (158)
35 PF00544 Pec_lyase_C: Pectate 96.4 0.035 7.6E-07 46.5 9.8 99 48-153 39-158 (200)
36 PF05048 NosD: Periplasmic cop 96.1 0.085 1.8E-06 44.9 10.7 70 47-122 15-84 (236)
37 PLN02432 putative pectinestera 95.9 0.29 6.3E-06 43.4 13.5 119 17-153 22-154 (293)
38 PLN02773 pectinesterase 95.7 0.44 9.5E-06 42.7 14.0 104 17-122 16-148 (317)
39 TIGR03808 RR_plus_rpt_1 twin-a 95.6 0.076 1.7E-06 49.4 8.9 76 47-122 137-267 (455)
40 PF12218 End_N_terminal: N ter 95.5 0.021 4.6E-07 38.2 3.7 18 9-26 1-18 (67)
41 PF12708 Pectate_lyase_3: Pect 95.2 0.17 3.6E-06 42.0 9.2 40 58-101 96-141 (225)
42 PF03718 Glyco_hydro_49: Glyco 95.2 0.24 5.2E-06 47.0 10.7 61 47-115 345-412 (582)
43 PLN02304 probable pectinestera 95.0 0.8 1.7E-05 42.0 13.5 119 17-153 86-228 (379)
44 PLN02682 pectinesterase family 94.8 0.73 1.6E-05 42.2 12.7 119 17-153 81-229 (369)
45 PLN02176 putative pectinestera 94.8 1 2.2E-05 40.9 13.4 119 17-153 50-189 (340)
46 PF01095 Pectinesterase: Pecti 94.7 0.13 2.8E-06 45.8 7.3 119 17-153 11-148 (298)
47 PLN02170 probable pectinestera 94.7 0.82 1.8E-05 43.8 13.1 119 17-153 236-374 (529)
48 PRK10531 acyl-CoA thioesterase 94.6 1.1 2.4E-05 41.7 13.4 74 74-153 203-283 (422)
49 COG3866 PelB Pectate lyase [Ca 94.6 0.35 7.5E-06 42.8 9.5 101 47-153 118-229 (345)
50 PLN02713 Probable pectinestera 94.5 0.86 1.9E-05 44.1 13.0 118 17-153 261-401 (566)
51 PLN02416 probable pectinestera 94.3 0.86 1.9E-05 43.9 12.4 119 17-153 241-378 (541)
52 PLN02506 putative pectinestera 94.2 0.97 2.1E-05 43.5 12.5 118 17-153 243-380 (537)
53 PLN02201 probable pectinestera 94.2 1.6 3.5E-05 41.8 13.9 118 17-153 217-354 (520)
54 PLN02916 pectinesterase family 94.2 1.2 2.5E-05 42.5 12.8 118 17-153 198-338 (502)
55 PLN02301 pectinesterase/pectin 94.1 1.1 2.4E-05 43.1 12.8 119 17-153 247-384 (548)
56 PLN02745 Putative pectinestera 93.9 1.4 3.1E-05 42.9 13.1 118 17-153 296-433 (596)
57 PLN02634 probable pectinestera 93.8 2.1 4.5E-05 39.1 13.4 119 17-153 67-215 (359)
58 PLN02671 pectinesterase 93.7 1.9 4E-05 39.4 12.8 119 17-153 70-219 (359)
59 PLN02488 probable pectinestera 93.7 2.1 4.6E-05 40.8 13.6 118 17-153 208-345 (509)
60 COG3420 NosD Nitrous oxidase a 93.7 1.2 2.7E-05 40.0 11.3 70 53-122 76-177 (408)
61 PLN02708 Probable pectinestera 93.7 2 4.4E-05 41.5 13.7 118 17-153 252-391 (553)
62 PLN02217 probable pectinestera 93.5 1.4 3E-05 43.4 12.4 103 17-122 261-383 (670)
63 PLN02933 Probable pectinestera 93.5 1.7 3.7E-05 41.7 12.8 119 17-153 229-366 (530)
64 PLN02468 putative pectinestera 93.4 1.5 3.3E-05 42.5 12.4 118 17-153 269-406 (565)
65 PLN02990 Probable pectinestera 93.4 1.6 3.5E-05 42.4 12.6 118 17-153 270-408 (572)
66 PLN02313 Pectinesterase/pectin 93.1 1.8 3.9E-05 42.2 12.5 119 17-153 286-423 (587)
67 PLN02197 pectinesterase 93.1 2.4 5.2E-05 41.3 13.2 119 17-153 286-425 (588)
68 PLN02314 pectinesterase 93.1 2.1 4.5E-05 41.8 12.8 118 17-153 289-426 (586)
69 PLN02497 probable pectinestera 92.9 3.6 7.7E-05 37.2 13.3 119 17-153 43-183 (331)
70 PLN02665 pectinesterase family 92.7 1.9 4E-05 39.5 11.4 119 17-153 79-220 (366)
71 PLN03043 Probable pectinestera 92.3 1.7 3.6E-05 42.0 11.0 119 17-153 234-374 (538)
72 COG4677 PemB Pectin methyleste 91.6 1.8 4E-05 38.8 9.5 48 76-123 188-240 (405)
73 PLN02484 probable pectinestera 90.5 5.9 0.00013 38.6 12.7 118 17-153 283-421 (587)
74 PLN02995 Probable pectinestera 90.3 2.9 6.2E-05 40.3 10.3 118 17-153 234-373 (539)
75 PF01696 Adeno_E1B_55K: Adenov 89.5 4.9 0.00011 37.0 10.7 38 75-115 119-156 (386)
76 TIGR03804 para_beta_helix para 89.2 0.72 1.6E-05 28.4 3.7 39 71-114 2-40 (44)
77 TIGR03804 para_beta_helix para 75.2 8.8 0.00019 23.3 4.5 40 48-88 2-41 (44)
78 PLN02480 Probable pectinestera 74.4 42 0.00091 30.5 10.4 59 52-116 130-198 (343)
79 PRK10123 wcaM putative colanic 69.3 21 0.00045 31.8 6.9 100 47-153 261-374 (464)
80 PRK10531 acyl-CoA thioesterase 64.4 1.1E+02 0.0024 28.7 11.1 73 48-120 200-287 (422)
81 PF09251 PhageP22-tail: Salmon 63.2 28 0.00062 32.5 6.8 39 105-153 312-350 (549)
82 PF03211 Pectate_lyase: Pectat 61.5 1E+02 0.0022 26.2 13.4 78 36-122 20-101 (215)
83 PF07602 DUF1565: Protein of u 60.8 62 0.0013 28.0 8.2 51 48-103 91-144 (246)
84 PF08480 Disaggr_assoc: Disagg 60.6 97 0.0021 25.7 9.3 94 55-153 3-109 (198)
85 PLN02682 pectinesterase family 57.8 1.6E+02 0.0034 27.2 10.7 62 51-118 160-231 (369)
86 PF14592 Chondroitinas_B: Chon 56.1 1.2E+02 0.0026 28.4 9.8 96 55-153 224-322 (425)
87 PLN02698 Probable pectinestera 51.0 1.3E+02 0.0027 28.9 9.4 73 17-89 225-310 (497)
88 PLN02773 pectinesterase 49.2 1.4E+02 0.0031 26.8 8.9 63 52-120 100-167 (317)
89 smart00710 PbH1 Parallel beta- 46.4 28 0.00061 17.5 2.6 14 104-117 2-15 (26)
90 PLN02708 Probable pectinestera 42.4 2.6E+02 0.0057 27.2 10.2 62 52-119 328-394 (553)
91 COG3420 NosD Nitrous oxidase a 37.9 1.6E+02 0.0034 27.0 7.2 65 47-112 152-233 (408)
92 PF03211 Pectate_lyase: Pectat 36.8 2.6E+02 0.0057 23.7 10.6 62 53-120 60-122 (215)
93 PF13345 DUF4098: Domain of un 35.0 1.3E+02 0.0028 19.6 6.9 37 184-220 35-72 (76)
94 PLN02176 putative pectinestera 35.0 3.5E+02 0.0076 24.6 10.0 59 52-116 120-189 (340)
95 PF03079 ARD: ARD/ARD' family; 34.9 42 0.0009 26.9 3.0 34 35-70 122-156 (157)
96 PF01095 Pectinesterase: Pecti 33.8 1.4E+02 0.003 26.5 6.4 62 52-120 85-152 (298)
97 COG0336 TrmD tRNA-(guanine-N1) 33.4 32 0.00069 29.5 2.1 42 1-44 35-90 (240)
98 PLN02665 pectinesterase family 31.1 2.4E+02 0.0051 26.0 7.5 11 143-153 189-199 (366)
99 PLN02432 putative pectinestera 29.0 2.9E+02 0.0063 24.6 7.5 63 52-120 92-158 (293)
100 PLN02713 Probable pectinestera 27.9 3.9E+02 0.0084 26.2 8.7 12 104-115 340-351 (566)
101 PF11429 Colicin_D: Colicin D; 27.2 75 0.0016 23.2 2.9 37 5-46 10-47 (92)
102 PLN02506 putative pectinestera 27.0 3.6E+02 0.0077 26.2 8.3 11 143-153 349-359 (537)
103 PLN02304 probable pectinestera 27.0 4.6E+02 0.0099 24.3 8.6 62 53-120 161-232 (379)
104 smart00722 CASH Domain present 26.7 2.6E+02 0.0057 20.5 6.5 66 47-114 39-112 (146)
105 PF01186 Lysyl_oxidase: Lysyl 26.6 1.1E+02 0.0024 25.7 4.2 11 40-51 157-167 (205)
106 PLN02671 pectinesterase 26.5 3.1E+02 0.0066 25.2 7.4 60 53-118 153-221 (359)
107 PF07157 DNA_circ_N: DNA circu 25.4 1.2E+02 0.0027 22.1 3.8 18 23-41 67-84 (93)
108 PLN02416 probable pectinestera 25.4 3.5E+02 0.0075 26.3 7.9 11 143-153 347-357 (541)
109 PLN02634 probable pectinestera 24.4 4.2E+02 0.009 24.4 7.8 62 53-120 148-219 (359)
110 PLN02916 pectinesterase family 23.8 6.4E+02 0.014 24.3 9.2 10 144-153 308-317 (502)
111 PLN02170 probable pectinestera 23.3 5.4E+02 0.012 25.0 8.6 11 143-153 343-353 (529)
112 PLN02301 pectinesterase/pectin 23.1 5.7E+02 0.012 25.0 8.9 13 76-88 350-362 (548)
113 PLN02468 putative pectinestera 23.1 4.8E+02 0.01 25.5 8.4 10 144-153 376-385 (565)
114 PLN02197 pectinesterase 22.3 7E+02 0.015 24.6 9.4 12 142-153 393-404 (588)
115 PLN03043 Probable pectinestera 21.7 5.8E+02 0.013 24.8 8.6 42 103-153 312-353 (538)
116 PF02741 FTR_C: FTR, proximal 21.5 86 0.0019 24.9 2.4 25 18-45 112-136 (150)
117 PRK15018 1-acyl-sn-glycerol-3- 21.4 1E+02 0.0022 26.4 3.2 26 18-45 125-150 (245)
118 PLN02745 Putative pectinestera 21.4 5.4E+02 0.012 25.4 8.4 12 142-153 401-412 (596)
119 PLN02497 probable pectinestera 21.0 5.9E+02 0.013 23.1 8.1 59 52-116 113-183 (331)
120 COG0033 Pgm Phosphoglucomutase 20.5 1.2E+02 0.0025 28.8 3.5 34 11-46 61-94 (524)
121 PLN02201 probable pectinestera 20.4 7.9E+02 0.017 23.8 9.3 10 144-153 324-333 (520)
122 PLN02217 probable pectinestera 20.0 4.9E+02 0.011 26.1 7.8 11 143-153 388-398 (670)
No 1
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=1.1e-57 Score=415.67 Aligned_cols=243 Identities=52% Similarity=0.937 Sum_probs=221.8
Q ss_pred CeeeeecCccCCCccchHHHHHHHHHHHhhcCCCCcEEEecCCeEE----------------------------------
Q 042417 1 VFNVKDFGAVADGIKDDSKAFETAWREACNWDGIKSAVLVPPGKYL---------------------------------- 46 (249)
Q Consensus 1 ~~~v~dfGA~gdg~~ddt~Aiq~Ai~~a~~~~g~g~~v~iP~G~y~---------------------------------- 46 (249)
++||+||||+|||.+|||+|||+||++||+..| |++|+||+|+|+
T Consensus 36 ~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~G-gg~V~vP~G~yl~g~i~lkgpc~~~s~v~l~L~~s~d~~~y~~~~~ 114 (404)
T PLN02188 36 LFDVRSFGARANGHTDDSKAFMAAWKAACASTG-AVTLLIPPGTYYIGPVQFHGPCTNVSSLTFTLKAATDLSRYGSGND 114 (404)
T ss_pred EEehhhcCcCCCCCeeCHHHHHHHHHHHhccCC-CeEEEECCCeEEEEeEEeCCCcCcceeEEEEEEcCCCHHHCCCccc
Confidence 489999999999999999999999987898888 899999999998
Q ss_pred ------------------------------------------EEEEEecCCCceeceeEecccCeEEEEEceeeEEEEee
Q 042417 47 ------------------------------------------SIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDL 84 (249)
Q Consensus 47 ------------------------------------------~i~~~~~~nv~i~gi~i~ns~~~~i~~~~s~nv~I~n~ 84 (249)
+|.|.+|+++.|++++++|||+|++++..|++|+|+++
T Consensus 115 ~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~w~i~~~~~~~v~i~~v 194 (404)
T PLN02188 115 WIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVECRNFKGSGL 194 (404)
T ss_pred eEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCCeEEEEEccccEEEEEE
Confidence 67888999999999999999999999999999999999
Q ss_pred EEecCCCCCCCcceEecCcccEEEEeeEEecCCCeeEe----------------CcceEEccCCCCCCCCceEeEEEEee
Q 042417 85 KITAHADSPNTEGIHIGSSNGSEISHSVIATGDDCVSL----------------GHGISVGSLGKGINDEEVVGLTVRNC 148 (249)
Q Consensus 85 ~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD~i~i----------------g~Gi~iGs~g~~~~~~~v~ni~v~n~ 148 (249)
+|+++.++||+||||+.+|+||+|+||+|.+|||||++ ||||+|||+|++.+.+.|+||+|+||
T Consensus 195 ~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~ 274 (404)
T PLN02188 195 KISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDC 274 (404)
T ss_pred EEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEee
Confidence 99999889999999999999999999999999999999 89999999998877788999999999
Q ss_pred EEEcc------------------------ceEEecCCccEEEEeeeCCCCCCCcCCCCceeEEeEEEEeEEEEccCC---
Q 042417 149 TFTGT------------------------NIVTNNVENPIVIDQLYCPYNKCNIKVPSQVKTSNVRFNNIRGTSANK--- 201 (249)
Q Consensus 149 ~~~~~------------------------nI~~~nv~~~i~i~~~y~~~~~~~~~~~~~~~i~nI~~~ni~g~~~~~--- 201 (249)
+|.++ ||+|+|+++||.|+++|++...|....++.+.|+||+|+||+++....
T Consensus 275 ~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~~~~~a~ 354 (404)
T PLN02188 275 TFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSSQVAV 354 (404)
T ss_pred EEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEEecCceEE
Confidence 99998 777777889999999998765554334567899999999999988643
Q ss_pred -------CceecEEEEeEEEEEcCceeecCCCCCcceeecccCccCCcccCCCCC
Q 042417 202 -------IPCQNIGIGNINWVYNGVNVKVEGPETTSLCSNVKPTLFGKQIPATCV 249 (249)
Q Consensus 202 -------~~~~~i~~~nv~i~~~~g~~~~~~~~~~~~c~n~~~~~~~~~~~~~c~ 249 (249)
.||++|+|+||+|+.++|. ++ ..+.|.|++|.+.|.++|.||+
T Consensus 355 ~l~cs~~~pc~ni~~~nV~i~~~~g~----~~-~~~~C~nv~g~~~g~~~p~~C~ 404 (404)
T PLN02188 355 LLKCSRGVPCQGVYLQDVHLDLSSGE----GG-TSSSCENVRAKYIGTQIPPPCP 404 (404)
T ss_pred EEEECCCCCEeeEEEEeeEEEecCCC----CC-cCceeEcceeEEcccCcCCCCC
Confidence 7899999999999988664 23 5799999999999999999997
No 2
>PLN02155 polygalacturonase
Probab=100.00 E-value=5.7e-57 Score=409.57 Aligned_cols=241 Identities=44% Similarity=0.804 Sum_probs=219.8
Q ss_pred CeeeeecCccCCCccchHHHHHHHHHHHhhcCCCCcEEEecCCeEE----------------------------------
Q 042417 1 VFNVKDFGAVADGIKDDSKAFETAWREACNWDGIKSAVLVPPGKYL---------------------------------- 46 (249)
Q Consensus 1 ~~~v~dfGA~gdg~~ddt~Aiq~Ai~~a~~~~g~g~~v~iP~G~y~---------------------------------- 46 (249)
+|||+||||+|||++|||+|||+||++||++.| |++|+||+|+|+
T Consensus 27 ~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~g-Gg~v~vP~G~yl~g~i~l~gpcksnv~l~l~G~l~~~~d~~~~~~~ 105 (394)
T PLN02155 27 VFNVVSFGAKPDGVTDSTAAFLKAWQGACGSAS-SATVVVPTGTFLLKVITFGGPCKSKITFQVAGTVVAPEDYRTFGNS 105 (394)
T ss_pred EEEhhhcCcCCCCccccHHHHHHHHHHHcccCC-CeEEEECCCcEEEEEEEEcccCCCCceEEEeeEEECcccccccccc
Confidence 489999999999999999999999977898888 899999999999
Q ss_pred -----------------------------------------EEEEEecCCCceeceeEecccCeEEEEEceeeEEEEeeE
Q 042417 47 -----------------------------------------SIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLK 85 (249)
Q Consensus 47 -----------------------------------------~i~~~~~~nv~i~gi~i~ns~~~~i~~~~s~nv~I~n~~ 85 (249)
+|+|.+|++++|++++++|||+|++++..|+||+|++++
T Consensus 106 ~~wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w~i~~~~~~nv~i~~v~ 185 (394)
T PLN02155 106 GYWILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVVVRNVK 185 (394)
T ss_pred ceeEEEECcCCCEEEccEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCCeEEEEECeeeEEEEEEE
Confidence 588899999999999999999999999999999999999
Q ss_pred EecCCCCCCCcceEecCcccEEEEeeEEecCCCeeEe----------------CcceEEccCCCCCCCCceEeEEEEeeE
Q 042417 86 ITAHADSPNTEGIHIGSSNGSEISHSVIATGDDCVSL----------------GHGISVGSLGKGINDEEVVGLTVRNCT 149 (249)
Q Consensus 86 i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD~i~i----------------g~Gi~iGs~g~~~~~~~v~ni~v~n~~ 149 (249)
|+++.++||+||||+.+|+||+|+||+|.+|||||++ |||++|||+|++.+.+.|+||+|+||+
T Consensus 186 I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~ 265 (394)
T PLN02155 186 LVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSV 265 (394)
T ss_pred EECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccccccCCCCcEEEEEEEeeE
Confidence 9999889999999999999999999999999999999 899999999987656889999999999
Q ss_pred EEcc-----------------------ceEEecCCccEEEEeeeCCCCC-CCcCCCCceeEEeEEEEeEEEEccCC----
Q 042417 150 FTGT-----------------------NIVTNNVENPIVIDQLYCPYNK-CNIKVPSQVKTSNVRFNNIRGTSANK---- 201 (249)
Q Consensus 150 ~~~~-----------------------nI~~~nv~~~i~i~~~y~~~~~-~~~~~~~~~~i~nI~~~ni~g~~~~~---- 201 (249)
|.++ ||+|+|+++||.|+++|++... |+ ..++.+.|+||+|+||+++....
T Consensus 266 ~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~-~~~s~v~i~~It~~ni~gt~~~~~a~~ 344 (394)
T PLN02155 266 FTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCP-NEYSGVKISQVTYKNIQGTSATQEAMK 344 (394)
T ss_pred EeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCc-CCCCCeEEEEEEEEeeEEEecCCceEE
Confidence 9987 7778888899999999987543 33 33566899999999999987633
Q ss_pred ------CceecEEEEeEEEEEcCceeecCCCCCcceeecccCccCCcccCCCCC
Q 042417 202 ------IPCQNIGIGNINWVYNGVNVKVEGPETTSLCSNVKPTLFGKQIPATCV 249 (249)
Q Consensus 202 ------~~~~~i~~~nv~i~~~~g~~~~~~~~~~~~c~n~~~~~~~~~~~~~c~ 249 (249)
.||++|+|+||+|+.+++. + ..+.|.|++|...+.++|.||+
T Consensus 345 l~c~~~~pc~~I~l~nv~i~~~~~~-----~-~~~~C~n~~G~~~~~~~p~~c~ 392 (394)
T PLN02155 345 LVCSKSSPCTGITLQDIKLTYNKGT-----P-ATSFCFNAVGKSLGVIQPTSCL 392 (394)
T ss_pred EEeCCCCCEEEEEEEeeEEEecCCC-----c-cCcEEeccEeEEcccCCccccc
Confidence 7899999999999998764 5 6899999999999977999996
No 3
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=1.6e-56 Score=410.27 Aligned_cols=244 Identities=37% Similarity=0.674 Sum_probs=217.6
Q ss_pred CeeeeecCccCCCccchHHHHHHHHHHHhhcCCCCcEEEecCCe-EE---------------------------------
Q 042417 1 VFNVKDFGAVADGIKDDSKAFETAWREACNWDGIKSAVLVPPGK-YL--------------------------------- 46 (249)
Q Consensus 1 ~~~v~dfGA~gdg~~ddt~Aiq~Ai~~a~~~~g~g~~v~iP~G~-y~--------------------------------- 46 (249)
++||+||||+|||.+|||+|||+||++||++.| +++|+||+|+ |+
T Consensus 23 ~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~g-gg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~~~~w~~ 101 (456)
T PLN03003 23 ALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTG-DGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSKGNWKG 101 (456)
T ss_pred EEehhhcCCCCCCCcccHHHHHHHHHHhhhccC-CCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCccccccC
Confidence 489999999999999999999999988898777 8999999995 75
Q ss_pred --------------------------------------EEEEEecCCCceeceeEecccCeEEEEEceeeEEEEeeEEec
Q 042417 47 --------------------------------------SIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITA 88 (249)
Q Consensus 47 --------------------------------------~i~~~~~~nv~i~gi~i~ns~~~~i~~~~s~nv~I~n~~i~~ 88 (249)
+++|.+|+|+.|+|++++|||+|++++..|++|+|++++|++
T Consensus 102 ~~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i~~c~nV~i~~l~I~a 181 (456)
T PLN03003 102 DKDQWILFTDIEGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINA 181 (456)
T ss_pred CCcceEEEEcccceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCcEEEEEeccccEEEEEEEEeC
Confidence 789999999999999999999999999999999999999999
Q ss_pred CCCCCCCcceEecCcccEEEEeeEEecCCCeeEe----------------CcceEEccCCCCCCCCceEeEEEEeeEEEc
Q 042417 89 HADSPNTEGIHIGSSNGSEISHSVIATGDDCVSL----------------GHGISVGSLGKGINDEEVVGLTVRNCTFTG 152 (249)
Q Consensus 89 ~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD~i~i----------------g~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~ 152 (249)
+.++||+||||+.+|+||+|+||+|.+|||||++ ||||+|||+|+++..+.|+||+|+||+|.+
T Consensus 182 p~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSlg~~g~~~~V~NV~v~n~~~~~ 261 (456)
T PLN03003 182 PESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNCNFRG 261 (456)
T ss_pred CCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeeccCCCCcceEEEEEEEeeEEEC
Confidence 9889999999999999999999999999999999 899999999987766789999999999999
Q ss_pred c----------------------ceEEecCCccEEEEeeeCCCCC---CCcCCCCceeEEeEEEEeEEEEccCC------
Q 042417 153 T----------------------NIVTNNVENPIVIDQLYCPYNK---CNIKVPSQVKTSNVRFNNIRGTSANK------ 201 (249)
Q Consensus 153 ~----------------------nI~~~nv~~~i~i~~~y~~~~~---~~~~~~~~~~i~nI~~~ni~g~~~~~------ 201 (249)
+ ||+|+|+++||.|+++|+.... |. ..++.+.|+||+|+||+|+....
T Consensus 262 T~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~-~~~s~v~IsnI~f~NI~GTs~~~~ai~l~ 340 (456)
T PLN03003 262 TMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKD-RKSSAVEVSKVVFSNFIGTSKSEYGVDFR 340 (456)
T ss_pred CCcEEEEEEeCCCCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCccc-CCCCCcEEEeEEEEeEEEEeCccceEEEE
Confidence 8 7778888899999999986432 22 34567899999999999986554
Q ss_pred ----CceecEEEEeEEEEEcCceeecCCCCCcceeecccCccCCcccCCCCC
Q 042417 202 ----IPCQNIGIGNINWVYNGVNVKVEGPETTSLCSNVKPTLFGKQIPATCV 249 (249)
Q Consensus 202 ----~~~~~i~~~nv~i~~~~g~~~~~~~~~~~~c~n~~~~~~~~~~~~~c~ 249 (249)
.||++|+|+||+|+.+.++. +++ ..+.|+|++|.+.+.++|.||+
T Consensus 341 Cs~~~PC~nI~l~ni~l~~~~~g~--~~~-~~~~C~Nv~G~~~~~~~~~~C~ 389 (456)
T PLN03003 341 CSERVPCTEIFLRDMKIETASSGS--GQV-AQGQCLNVRGASTIAVPGLECL 389 (456)
T ss_pred eCCCCCeeeEEEEEEEEEecCCCC--CCc-cCcEEeccccccCceECCCCcc
Confidence 79999999999999874210 024 6799999999999877778996
No 4
>PLN03010 polygalacturonase
Probab=100.00 E-value=4.2e-56 Score=404.90 Aligned_cols=242 Identities=38% Similarity=0.634 Sum_probs=218.3
Q ss_pred CeeeeecCccCCCccchHHHHHHHHHHHhhcCCCCcEEEecCC-eEE---------------------------------
Q 042417 1 VFNVKDFGAVADGIKDDSKAFETAWREACNWDGIKSAVLVPPG-KYL--------------------------------- 46 (249)
Q Consensus 1 ~~~v~dfGA~gdg~~ddt~Aiq~Ai~~a~~~~g~g~~v~iP~G-~y~--------------------------------- 46 (249)
+|||+||||+|||++|||+|||+||+++|...|.+++|+||+| +|+
T Consensus 46 ~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~~d~~~w~ 125 (409)
T PLN03010 46 NYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAPSNIVAWS 125 (409)
T ss_pred EEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEccCChhhcc
Confidence 4899999999999999999999999777853320279999999 687
Q ss_pred ---------------------------------EEEEEecCCCceeceeEecccCeEEEEEceeeEEEEeeEEecCCCCC
Q 042417 47 ---------------------------------SIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADSP 93 (249)
Q Consensus 47 ---------------------------------~i~~~~~~nv~i~gi~i~ns~~~~i~~~~s~nv~I~n~~i~~~~~~~ 93 (249)
+++|.+|+|++|++++++|+|+|++++..|++++|++++|+++..++
T Consensus 126 ~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~ 205 (409)
T PLN03010 126 NPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWEALHISKCDNLTINGITSIDSPKNHISIKTCNYVAISKINILAPETSP 205 (409)
T ss_pred CCCCcceEEEecccccEEeeceEEeCCCccccceEEEEeecCeEEeeeEEEcCCceEEEEeccccEEEEEEEEeCCCCCC
Confidence 68899999999999999999999999999999999999999998889
Q ss_pred CCcceEecCcccEEEEeeEEecCCCeeEe----------------CcceEEccCCCCCCCCceEeEEEEeeEEEcc----
Q 042417 94 NTEGIHIGSSNGSEISHSVIATGDDCVSL----------------GHGISVGSLGKGINDEEVVGLTVRNCTFTGT---- 153 (249)
Q Consensus 94 n~DGi~~~~s~nv~I~n~~i~~gDD~i~i----------------g~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~---- 153 (249)
|+||||+.+|+||+|+||+|.+|||||++ ||||+|||+|+.+....|+||+|+||+|.++
T Consensus 206 NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~Gi 285 (409)
T PLN03010 206 NTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGA 285 (409)
T ss_pred CCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcce
Confidence 99999999999999999999999999999 8999999999877667899999999999998
Q ss_pred ------------------ceEEecCCccEEEEeeeCCCCC-CCcCCCCceeEEeEEEEeEEEEccCC----------Cce
Q 042417 154 ------------------NIVTNNVENPIVIDQLYCPYNK-CNIKVPSQVKTSNVRFNNIRGTSANK----------IPC 204 (249)
Q Consensus 154 ------------------nI~~~nv~~~i~i~~~y~~~~~-~~~~~~~~~~i~nI~~~ni~g~~~~~----------~~~ 204 (249)
||+|+|+++||.|+++|+.... |. .+++++.|+||+|+||+|+.... .||
T Consensus 286 rIKt~~G~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~-~~~s~v~Isdi~~~ni~GT~~~~~~i~l~Cs~~~pC 364 (409)
T PLN03010 286 RIKTWQGGQGYARNISFENITLINTKNPIIIDQQYIDKGKLDA-TKDSAVAISNVKYVGFRGTTSNENAITLKCSAITHC 364 (409)
T ss_pred EEEEecCCCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCC-CCCCceEEEeEEEEeeEEEeCCCccEEEEeCCCCCE
Confidence 7778888899999999987543 33 45678999999999999986553 789
Q ss_pred ecEEEEeEEEEEcCceeecCCCCCcceeecccCccCCcccCCCCC
Q 042417 205 QNIGIGNINWVYNGVNVKVEGPETTSLCSNVKPTLFGKQIPATCV 249 (249)
Q Consensus 205 ~~i~~~nv~i~~~~g~~~~~~~~~~~~c~n~~~~~~~~~~~~~c~ 249 (249)
++|+|+||+|+.+.|. + +.+.|.|+++...+.++|.+||
T Consensus 365 ~ni~~~~v~l~~~~g~-----~-~~~~C~nv~g~~~~~~~~~~C~ 403 (409)
T PLN03010 365 KDVVMDDIDVTMENGE-----K-PKVECQNVEGESSDTDLMRDCF 403 (409)
T ss_pred eceEEEEEEEEecCCC-----c-cceEeeCccccccCCCCCCccc
Confidence 9999999999998764 4 6899999999999999999997
No 5
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=2.7e-56 Score=410.87 Aligned_cols=241 Identities=40% Similarity=0.726 Sum_probs=219.8
Q ss_pred CeeeeecCccCCCccchHHHHHHHHHHHhhcCCCCcEEEecCCe-EE---------------------------------
Q 042417 1 VFNVKDFGAVADGIKDDSKAFETAWREACNWDGIKSAVLVPPGK-YL--------------------------------- 46 (249)
Q Consensus 1 ~~~v~dfGA~gdg~~ddt~Aiq~Ai~~a~~~~g~g~~v~iP~G~-y~--------------------------------- 46 (249)
++||+||||+|||.+|||+|||+||++||+..| |++|+||+|+ |+
T Consensus 52 ~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~g-gg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~g~l~~~~d~~~w~~ 130 (443)
T PLN02793 52 VLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKV-KTRIVIPAGYTFLVRPIDLGGPCKAKLTLQISGTIIAPKDPDVWKG 130 (443)
T ss_pred EEEhhhcccCCCCCCccHHHHHHHHHHHhccCC-CCEEEECCCceEEEEEEEECCccCCCeEEEEEEEEEccCChHHccC
Confidence 589999999999999999999999977898888 8999999995 86
Q ss_pred ------------------------------------------------EEEEEecCCCceeceeEecccCeEEEEEceee
Q 042417 47 ------------------------------------------------SIRFNFLNDSTITGIKSVDSRYFHINILGCYN 78 (249)
Q Consensus 47 ------------------------------------------------~i~~~~~~nv~i~gi~i~ns~~~~i~~~~s~n 78 (249)
+|.|.+|+|++|++++++|+|+|++++..|+|
T Consensus 131 ~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~~~~~~n 210 (443)
T PLN02793 131 LNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNCRR 210 (443)
T ss_pred CCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEEEEEccCc
Confidence 58889999999999999999999999999999
Q ss_pred EEEEeeEEecCCCCCCCcceEecCcccEEEEeeEEecCCCeeEe----------------CcceEEccCCCCCCCCceEe
Q 042417 79 LKLNDLKITAHADSPNTEGIHIGSSNGSEISHSVIATGDDCVSL----------------GHGISVGSLGKGINDEEVVG 142 (249)
Q Consensus 79 v~I~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD~i~i----------------g~Gi~iGs~g~~~~~~~v~n 142 (249)
|+|++++|+++..+||+||||+.+|+||+|+||+|.+|||||++ |||++|||+|++.+.+.|+|
T Consensus 211 v~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~~~~V~n 290 (443)
T PLN02793 211 VTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSEVRD 290 (443)
T ss_pred EEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCCCCcEEE
Confidence 99999999999889999999999999999999999999999999 89999999998877788999
Q ss_pred EEEEeeEEEcc----------------------ceEEecCCccEEEEeeeCCCC-CCCcCCCCceeEEeEEEEeEEEEcc
Q 042417 143 LTVRNCTFTGT----------------------NIVTNNVENPIVIDQLYCPYN-KCNIKVPSQVKTSNVRFNNIRGTSA 199 (249)
Q Consensus 143 i~v~n~~~~~~----------------------nI~~~nv~~~i~i~~~y~~~~-~~~~~~~~~~~i~nI~~~ni~g~~~ 199 (249)
|+|+||+|.++ ||+|+|+.+||.|+++|+... .|. ..++.+.|+||+|+||+++..
T Consensus 291 V~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~-~~ts~v~I~nI~~~nI~Gt~~ 369 (443)
T PLN02793 291 ITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCA-NQTSAVKVENISFVHIKGTSA 369 (443)
T ss_pred EEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCC-CCCCCeEEEeEEEEEEEEEEc
Confidence 99999999988 777888889999999998743 343 456678999999999999974
Q ss_pred CC----------CceecEEEEeEEEEEcCceeecCCCCCcceeecccCccCCcccCCCCC
Q 042417 200 NK----------IPCQNIGIGNINWVYNGVNVKVEGPETTSLCSNVKPTLFGKQIPATCV 249 (249)
Q Consensus 200 ~~----------~~~~~i~~~nv~i~~~~g~~~~~~~~~~~~c~n~~~~~~~~~~~~~c~ 249 (249)
.. .||+||+|+||+|+...|+ . ..+.|+|++|...+.+.|.||+
T Consensus 370 ~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~-----~-~~~~C~n~~g~~~~~~~p~~C~ 423 (443)
T PLN02793 370 TEEAIKFACSDSSPCEGLYLEDVQLLSSTGD-----F-TESFCWEAYGSSSGQVYPPPCF 423 (443)
T ss_pred ccccEEEEeCCCCCEeeEEEEeeEEEecCCC-----C-CCcEEEccEEeECCeEcCCccc
Confidence 32 7999999999999988764 4 6789999999999999999996
No 6
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=5e-55 Score=400.94 Aligned_cols=235 Identities=42% Similarity=0.735 Sum_probs=213.1
Q ss_pred CeeeeecCccCCCccchHHHHHHHHHHHhhcCCCCcEEEecCC-eEE---------------------------------
Q 042417 1 VFNVKDFGAVADGIKDDSKAFETAWREACNWDGIKSAVLVPPG-KYL--------------------------------- 46 (249)
Q Consensus 1 ~~~v~dfGA~gdg~~ddt~Aiq~Ai~~a~~~~g~g~~v~iP~G-~y~--------------------------------- 46 (249)
++||+||||+|||.+|||+|||+||++||+..| +++|+||+| +|+
T Consensus 67 ~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~G-gg~v~vP~G~tyl~~~i~l~gp~ks~~~l~l~g~L~~s~d~~~y~~ 145 (431)
T PLN02218 67 TVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNG-AVNLLVPKGNTYLLKSIQLTGPCKSIRTVQIFGTLSASQKRSDYKD 145 (431)
T ss_pred EEEeeecccCCCCCcccHHHHHHHHHHhhhcCC-CcEEEECCCCeEEEeeeEecCccCCceEEEEEEEEEeCCChhhccc
Confidence 589999999999999999999999988998888 889999999 586
Q ss_pred ------------------------------------------------EEEEEecCCCceeceeEecccCeEEEEEceee
Q 042417 47 ------------------------------------------------SIRFNFLNDSTITGIKSVDSRYFHINILGCYN 78 (249)
Q Consensus 47 ------------------------------------------------~i~~~~~~nv~i~gi~i~ns~~~~i~~~~s~n 78 (249)
+|.|.+|+|++|++++++|+|+|++++..|+|
T Consensus 146 ~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w~i~~~~~~n 225 (431)
T PLN02218 146 ISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQIQISIEKCSN 225 (431)
T ss_pred cccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCEEEEEEceee
Confidence 57889999999999999999999999999999
Q ss_pred EEEEeeEEecCCCCCCCcceEecCcccEEEEeeEEecCCCeeEe----------------CcceEEccCCCCCCCCceEe
Q 042417 79 LKLNDLKITAHADSPNTEGIHIGSSNGSEISHSVIATGDDCVSL----------------GHGISVGSLGKGINDEEVVG 142 (249)
Q Consensus 79 v~I~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD~i~i----------------g~Gi~iGs~g~~~~~~~v~n 142 (249)
|+|+|++|+++.++||+||||+.+|+||+|+||+|.+|||||+| |||++|||+|++...+.|+|
T Consensus 226 V~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~g~~~~~~~V~n 305 (431)
T PLN02218 226 VQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDDNSKAFVSG 305 (431)
T ss_pred EEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcCCCCCCCceEEE
Confidence 99999999999889999999999999999999999999999999 89999999997765678999
Q ss_pred EEEEeeEEEcc----------------------ceEEecCCccEEEEeeeCCCCCCCcCCCCceeEEeEEEEeEEEEccC
Q 042417 143 LTVRNCTFTGT----------------------NIVTNNVENPIVIDQLYCPYNKCNIKVPSQVKTSNVRFNNIRGTSAN 200 (249)
Q Consensus 143 i~v~n~~~~~~----------------------nI~~~nv~~~i~i~~~y~~~~~~~~~~~~~~~i~nI~~~ni~g~~~~ 200 (249)
|+|+||+|.++ ||+|+|+++||.|++.|+....|. .+++.+.|+||+|+||+++...
T Consensus 306 V~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~-~~~s~v~I~nI~~~NI~gtsa~ 384 (431)
T PLN02218 306 VTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCT-SQQSAVQVKNVVYRNISGTSAS 384 (431)
T ss_pred EEEEccEEecCCcceEEeecCCCCeEEEEEEEEeEEEEcccccEEEEeeccCCCCCC-CCCCCeEEEEEEEEeEEEEecC
Confidence 99999999998 778888889999999998866554 4457789999999999998764
Q ss_pred C----------CceecEEEEeEEEEEcCceeecCCCCCcceeecccCccCCcccCCCCC
Q 042417 201 K----------IPCQNIGIGNINWVYNGVNVKVEGPETTSLCSNVKPTLFGKQIPATCV 249 (249)
Q Consensus 201 ~----------~~~~~i~~~nv~i~~~~g~~~~~~~~~~~~c~n~~~~~~~~~~~~~c~ 249 (249)
. .||++|+|+||+|+. ....|+|+++...|.++| +|.
T Consensus 385 ~~ai~l~cs~~~pc~nI~l~nV~i~~-----------~~~~c~n~~~~~~~~~~p-~c~ 431 (431)
T PLN02218 385 DVAITFNCSKNYPCQGIVLDNVNIKG-----------GKATCTNANVVDKGAVSP-QCN 431 (431)
T ss_pred CcEEEEEECCCCCEeeEEEEeEEEEC-----------CeeeEEEeeEEEcccCCC-CCC
Confidence 3 789999999999973 236799999999996666 883
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=1.6e-38 Score=284.50 Aligned_cols=183 Identities=43% Similarity=0.705 Sum_probs=158.7
Q ss_pred EEEEEecCCCceeceeEecccCeEEEEEceeeEEEEeeEEecCCCCCCCcceEecCcccEEEEeeEEecCCCeeEe----
Q 042417 47 SIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADSPNTEGIHIGSSNGSEISHSVIATGDDCVSL---- 122 (249)
Q Consensus 47 ~i~~~~~~nv~i~gi~i~ns~~~~i~~~~s~nv~I~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD~i~i---- 122 (249)
+|.|.+|++++|++++++++|+|++++..|+|++|++++|.++...+|+||||+.+|+||+|+||++.++||||++
T Consensus 94 ~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~gDD~Iaiks~~ 173 (326)
T PF00295_consen 94 LIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFIDNGDDCIAIKSGS 173 (326)
T ss_dssp SEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEEESSSESEEESSEE
T ss_pred eeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeecccccCcccccccc
Confidence 7999999999999999999999999999999999999999998878999999999999999999999999999999
Q ss_pred ------------CcceEEccCCCCCCCCceEeEEEEeeEEEcc----------------------ceEEecCCccEEEEe
Q 042417 123 ------------GHGISVGSLGKGINDEEVVGLTVRNCTFTGT----------------------NIVTNNVENPIVIDQ 168 (249)
Q Consensus 123 ------------g~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~----------------------nI~~~nv~~~i~i~~ 168 (249)
+||++|||++..+....|+||+|+||+|.++ ||+|+|+.+||.|++
T Consensus 174 ~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~~~G~v~nI~f~ni~~~~v~~pi~i~~ 253 (326)
T PF00295_consen 174 GNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPGGGGYVSNITFENITMENVKYPIFIDQ 253 (326)
T ss_dssp CEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETTTSEEEEEEEEEEEEEEEESEEEEEEE
T ss_pred cceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEecccceEEeceEEEEEEecCCceEEEEEe
Confidence 8999999997655445799999999999998 667777789999999
Q ss_pred eeCCCCCCCcCCCCceeEEeEEEEeEEEEccCC----------CceecEEEEeEEEEEcCceeecCCCCCcceeecccCc
Q 042417 169 LYCPYNKCNIKVPSQVKTSNVRFNNIRGTSANK----------IPCQNIGIGNINWVYNGVNVKVEGPETTSLCSNVKPT 238 (249)
Q Consensus 169 ~y~~~~~~~~~~~~~~~i~nI~~~ni~g~~~~~----------~~~~~i~~~nv~i~~~~g~~~~~~~~~~~~c~n~~~~ 238 (249)
.|.....+. .++..+.|+||+|+||+++.... .||++|+|+||+|+. |. ..+.|+|++..
T Consensus 254 ~y~~~~~~~-~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~--g~-------~~~~c~nv~~~ 323 (326)
T PF00295_consen 254 DYRDGGPCG-KPPSGVSISNITFRNITGTSAGSSAISIDCSPGSPCSNITFENVNITG--GK-------KPAQCKNVPSG 323 (326)
T ss_dssp EECTTEESS-CSSSSSEEEEEEEEEEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEES--SB-------SESEEBSCCTT
T ss_pred ccccccccC-cccCCceEEEEEEEeeEEEeccceEEEEEECCcCcEEeEEEEeEEEEc--CC-------cCeEEECCCCC
Confidence 998854443 23456799999999999999872 789999999999998 33 67999998765
Q ss_pred c
Q 042417 239 L 239 (249)
Q Consensus 239 ~ 239 (249)
.
T Consensus 324 ~ 324 (326)
T PF00295_consen 324 I 324 (326)
T ss_dssp -
T ss_pred C
Confidence 4
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=1.8e-29 Score=235.14 Aligned_cols=146 Identities=34% Similarity=0.606 Sum_probs=133.7
Q ss_pred CeeeeecCccCCCccchHHHHHHHHHHHhhcCCCCcEEEecCCeEE----------------------------------
Q 042417 1 VFNVKDFGAVADGIKDDSKAFETAWREACNWDGIKSAVLVPPGKYL---------------------------------- 46 (249)
Q Consensus 1 ~~~v~dfGA~gdg~~ddt~Aiq~Ai~~a~~~~g~g~~v~iP~G~y~---------------------------------- 46 (249)
.++|++|||+|||.+++++|||+|| ++|+..| |++|+||+|+|+
T Consensus 82 ~~sv~~~ga~gDG~t~~~~aiq~AI-~~ca~a~-Gg~V~lPaGtylsg~l~LKS~~~L~l~egatl~~~~~p~~y~~~~~ 159 (542)
T COG5434 82 AFSVSDDGAVGDGATDNTAAIQAAI-DACASAG-GGTVLLPAGTYLSGPLFLKSNVTLHLAEGATLLASSNPKDYPSFTS 159 (542)
T ss_pred eeeeccccccccCCccCHHHHHHHH-Hhhhhhc-CceEEECCceeEeeeEEEecccEEEecCCceeeCCCChhhcccccc
Confidence 3799999999999999999999999 7887677 899999999999
Q ss_pred --------------------------------------------------------------------------------
Q 042417 47 -------------------------------------------------------------------------------- 46 (249)
Q Consensus 47 -------------------------------------------------------------------------------- 46 (249)
T Consensus 160 ~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g~~~~~i~~~~~rp~ 239 (542)
T COG5434 160 RFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGAVETRIGGKGVRPR 239 (542)
T ss_pred ccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcccchhhcccccCcCCc
Confidence
Q ss_pred EEEEEecCCCceeceeEecccCeEEEEEceeeEEEEeeEEecCCCCCCCcceEecCcccEEEEeeEEecCCCeeEe----
Q 042417 47 SIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADSPNTEGIHIGSSNGSEISHSVIATGDDCVSL---- 122 (249)
Q Consensus 47 ~i~~~~~~nv~i~gi~i~ns~~~~i~~~~s~nv~I~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD~i~i---- 122 (249)
++.|..|.|++++|++|.+++.|.+|+..|+|++++|++|++.... |+|||++.+|+||+|++|+|.+|||||++
T Consensus 240 ~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtgDD~I~iksg~ 318 (542)
T COG5434 240 TVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGDDCIAIKSGA 318 (542)
T ss_pred eEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecCCceEEeeccc
Confidence 4667789999999999999999999999999999999999997655 99999999999999999999999999999
Q ss_pred -----------------------Ccc-eEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 123 -----------------------GHG-ISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 123 -----------------------g~G-i~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
||| +.+||| +.++|+||++|||.|.++
T Consensus 319 ~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse----~~ggv~ni~ved~~~~~~ 369 (542)
T COG5434 319 GLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE----MGGGVQNITVEDCVMDNT 369 (542)
T ss_pred CCcccccccccccEEEecceecccccceEeeee----cCCceeEEEEEeeeeccC
Confidence 676 677888 778899999999988863
No 9
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.74 E-value=3.4e-16 Score=131.89 Aligned_cols=120 Identities=30% Similarity=0.497 Sum_probs=77.8
Q ss_pred CeeeeecCccCCCccchHHHHHHHHHHHhhcCCCCcEEEecCCeEEEEE-EEecCCCceec-----eeEe---cccCe--
Q 042417 1 VFNVKDFGAVADGIKDDSKAFETAWREACNWDGIKSAVLVPPGKYLSIR-FNFLNDSTITG-----IKSV---DSRYF-- 69 (249)
Q Consensus 1 ~~~v~dfGA~gdg~~ddt~Aiq~Ai~~a~~~~g~g~~v~iP~G~y~~i~-~~~~~nv~i~g-----i~i~---ns~~~-- 69 (249)
++||+||||++||++|||+|||+||++ .+..+ +++|+||+|+|+.-. +.-.+++++++ ..+. ..+..
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~-~~~~~-g~~v~~P~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~~ 78 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDA-AAAAG-GGVVYFPPGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFSV 78 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHH-HCSTT-SEEEEE-SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSCC
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhh-cccCC-CeEEEEcCcEEEEeCCeEcCCCeEEEccCCCeeEEEecCccccccc
Confidence 479999999999999999999999943 34456 899999999997211 22235666665 2222 11111
Q ss_pred --EEEEEce--ee--EEEEeeEEecCCCCC--CCcceEecCcccEEEEeeEEec-CCCeeEe
Q 042417 70 --HINILGC--YN--LKLNDLKITAHADSP--NTEGIHIGSSNGSEISHSVIAT-GDDCVSL 122 (249)
Q Consensus 70 --~i~~~~s--~n--v~I~n~~i~~~~~~~--n~DGi~~~~s~nv~I~n~~i~~-gDD~i~i 122 (249)
....... .+ +.|+|++|+.....+ ...|+++..+++++|+|+.+.+ +.+++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~ 140 (225)
T PF12708_consen 79 VPGIGVFDSGNSNIGIQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENSGGDGIYF 140 (225)
T ss_dssp EEEEEECCSCSCCEEEEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-SS-SEEE
T ss_pred ccceeeeecCCCCceEEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEccCccEEEE
Confidence 1112111 22 459999999876443 3588999999999999999987 3444444
No 10
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.67 E-value=1.1e-15 Score=139.16 Aligned_cols=118 Identities=15% Similarity=0.258 Sum_probs=87.6
Q ss_pred eeeeecCccCCCccchHHHHHHHHHHHhhcCCCCcEEEecCCeEE----------------------------EEEEEec
Q 042417 2 FNVKDFGAVADGIKDDSKAFETAWREACNWDGIKSAVLVPPGKYL----------------------------SIRFNFL 53 (249)
Q Consensus 2 ~~v~dfGA~gdg~~ddt~Aiq~Ai~~a~~~~g~g~~v~iP~G~y~----------------------------~i~~~~~ 53 (249)
+|+++|||++||.+|+|+|||+||+ +|+. + +++|++|+|+|+ ++.-...
T Consensus 38 ~dv~~fGa~~dG~td~T~ALQaAId-aAa~-g-G~tV~Lp~G~Y~~G~L~L~spltL~G~~gAt~~vIdG~~~lIiai~A 114 (455)
T TIGR03808 38 RDATQYGVRPNSPDDQTRALQRAID-EAAR-A-QTPLALPPGVYRTGPLRLPSGAQLIGVRGATRLVFTGGPSLLSSEGA 114 (455)
T ss_pred CCHHHcCcCCCCcchHHHHHHHHHH-Hhhc-C-CCEEEECCCceecccEEECCCcEEEecCCcEEEEEcCCceEEEEecC
Confidence 6889999999999999999999995 4443 3 579999999996 1222346
Q ss_pred CCCceeceeEecccC------eEEEEEceeeEEEEeeEEecCC-C-----------------CCCCcceEecCcccEEEE
Q 042417 54 NDSTITGIKSVDSRY------FHINILGCYNLKLNDLKITAHA-D-----------------SPNTEGIHIGSSNGSEIS 109 (249)
Q Consensus 54 ~nv~i~gi~i~ns~~------~~i~~~~s~nv~I~n~~i~~~~-~-----------------~~n~DGi~~~~s~nv~I~ 109 (249)
++++|+|++|+++.. ..|.+..|++++|++++|.... . .....+|+++.+++.+|+
T Consensus 115 ~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~I~lw~S~g~~V~ 194 (455)
T TIGR03808 115 DGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVTAIVSFDALGLIVA 194 (455)
T ss_pred CCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecceEeccccceEEEeccCCCEEE
Confidence 788888888877652 3477777888888888887642 1 012344666666699999
Q ss_pred eeEEec-CCCeeEe
Q 042417 110 HSVIAT-GDDCVSL 122 (249)
Q Consensus 110 n~~i~~-gDD~i~i 122 (249)
+.+|.. .|++|.+
T Consensus 195 ~N~I~g~RD~gi~i 208 (455)
T TIGR03808 195 RNTIIGANDNGIEI 208 (455)
T ss_pred CCEEEccCCCCeEE
Confidence 999887 6777777
No 11
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.39 E-value=8.7e-12 Score=111.95 Aligned_cols=140 Identities=24% Similarity=0.310 Sum_probs=104.2
Q ss_pred EEEEEecCCCceeceeEecccC----eEEEEEceeeEEEEeeEEecCCCCCCCcceEecCcc-cEEEEeeEEecCCCeeE
Q 042417 47 SIRFNFLNDSTITGIKSVDSRY----FHINILGCYNLKLNDLKITAHADSPNTEGIHIGSSN-GSEISHSVIATGDDCVS 121 (249)
Q Consensus 47 ~i~~~~~~nv~i~gi~i~ns~~----~~i~~~~s~nv~I~n~~i~~~~~~~n~DGi~~~~s~-nv~I~n~~i~~gDD~i~ 121 (249)
.+++.+|+|+.+++++|.++.. ..+++..|+||+|+|+.|++ ..|+|.+.+.+ ||+|+||++..+.. ++
T Consensus 117 ~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~-----gDD~Iaiks~~~ni~v~n~~~~~ghG-is 190 (326)
T PF00295_consen 117 HIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFIDN-----GDDCIAIKSGSGNILVENCTCSGGHG-IS 190 (326)
T ss_dssp SEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEEES-----SSESEEESSEECEEEEESEEEESSSE-EE
T ss_pred EEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeeccc-----ccCcccccccccceEEEeEEEecccc-ce
Confidence 6888899999999999998654 46999999999999999998 46899888765 99999999987653 66
Q ss_pred e-------------------------CcceEEccCCCCCCCCceEeEEEEeeEEEcc-----------------------
Q 042417 122 L-------------------------GHGISVGSLGKGINDEEVVGLTVRNCTFTGT----------------------- 153 (249)
Q Consensus 122 i-------------------------g~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~----------------------- 153 (249)
+ ..|+.|.+.- +..+.|+||+|+|++|.+.
T Consensus 191 iGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~--~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~ 268 (326)
T PF00295_consen 191 IGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWP--GGGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGV 268 (326)
T ss_dssp EEEESSSSE--EEEEEEEEEEEEESESEEEEEEEET--TTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSS
T ss_pred eeeccCCccccEEEeEEEEEEEeeccceEEEEEEec--ccceEEeceEEEEEEecCCceEEEEEeccccccccCcccCCc
Confidence 6 3455565532 2346799999999999887
Q ss_pred ---ceEEecCC------ccEEEEeeeCCCCCCCcCCCCceeEEeEEEEeEEEEcc-CCCceec
Q 042417 154 ---NIVTNNVE------NPIVIDQLYCPYNKCNIKVPSQVKTSNVRFNNIRGTSA-NKIPCQN 206 (249)
Q Consensus 154 ---nI~~~nv~------~~i~i~~~y~~~~~~~~~~~~~~~i~nI~~~ni~g~~~-~~~~~~~ 206 (249)
||+|+|+. .++.+.. . +..+++||+|+||..+.. ....|++
T Consensus 269 ~i~nI~~~nitg~~~~~~~i~i~~-----------~-~~~~~~ni~f~nv~i~~g~~~~~c~n 319 (326)
T PF00295_consen 269 SISNITFRNITGTSAGSSAISIDC-----------S-PGSPCSNITFENVNITGGKKPAQCKN 319 (326)
T ss_dssp EEEEEEEEEEEEEESTSEEEEEE------------B-TTSSEEEEEEEEEEEESSBSESEEBS
T ss_pred eEEEEEEEeeEEEeccceEEEEEE-----------C-CcCcEEeEEEEeEEEEcCCcCeEEEC
Confidence 66666652 1333321 1 223699999999999882 2244554
No 12
>PLN02793 Probable polygalacturonase
Probab=99.38 E-value=3.3e-11 Score=111.95 Aligned_cols=99 Identities=18% Similarity=0.256 Sum_probs=79.8
Q ss_pred EEEEEecCCCceeceeEeccc----CeEEEEEceeeEEEEeeEEecCCCCCCCcceEec-CcccEEEEeeEEecCCCeeE
Q 042417 47 SIRFNFLNDSTITGIKSVDSR----YFHINILGCYNLKLNDLKITAHADSPNTEGIHIG-SSNGSEISHSVIATGDDCVS 121 (249)
Q Consensus 47 ~i~~~~~~nv~i~gi~i~ns~----~~~i~~~~s~nv~I~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gDD~i~ 121 (249)
.+++.+|+|++|++++|.++. ..+|++.+|+||+|+|++|++. .|.|.+. .|+||+|+||....|+ +|+
T Consensus 202 ~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~g-----DDcIaik~~s~nI~I~n~~c~~Gh-Gis 275 (443)
T PLN02793 202 HIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTG-----DDCISIVGNSSRIKIRNIACGPGH-GIS 275 (443)
T ss_pred EEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCC-----CCeEEecCCcCCEEEEEeEEeCCc-cEE
Confidence 688999999999999998743 3669999999999999999984 6788885 5789999998886665 366
Q ss_pred e-------------------------CcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 122 L-------------------------GHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 122 i-------------------------g~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
| ..|+.|.+... ..+.|+||+|+|++|.+.
T Consensus 276 IGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g--~~G~v~nItf~ni~m~nv 330 (443)
T PLN02793 276 IGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQG--GSGNASKITFQNIFMENV 330 (443)
T ss_pred EecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCC--CCEEEEEEEEEeEEEecC
Confidence 6 34566666422 235799999999999998
No 13
>PLN02218 polygalacturonase ADPG
Probab=99.36 E-value=5.9e-11 Score=109.80 Aligned_cols=99 Identities=14% Similarity=0.233 Sum_probs=79.6
Q ss_pred EEEEEecCCCceeceeEeccc----CeEEEEEceeeEEEEeeEEecCCCCCCCcceEecC-cccEEEEeeEEecCCCeeE
Q 042417 47 SIRFNFLNDSTITGIKSVDSR----YFHINILGCYNLKLNDLKITAHADSPNTEGIHIGS-SNGSEISHSVIATGDDCVS 121 (249)
Q Consensus 47 ~i~~~~~~nv~i~gi~i~ns~----~~~i~~~~s~nv~I~n~~i~~~~~~~n~DGi~~~~-s~nv~I~n~~i~~gDD~i~ 121 (249)
.+++.+|+|++|++++|.++. ..+|++.+|+||+|+|++|.+. .|.|.+.+ |+||+|+||+...|+ +|+
T Consensus 217 ~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tG-----DDcIaIksgs~nI~I~n~~c~~GH-Gis 290 (431)
T PLN02218 217 QISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTG-----DDCISIESGSQNVQINDITCGPGH-GIS 290 (431)
T ss_pred EEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecC-----CceEEecCCCceEEEEeEEEECCC-CEE
Confidence 788899999999999998742 3569999999999999999984 67888874 789999999987665 466
Q ss_pred e-------------------------CcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 122 L-------------------------GHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 122 i-------------------------g~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
| ..|+.|.+... ..+.|+||+|+|++|.+.
T Consensus 291 IGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~G--g~G~v~nI~f~ni~m~~V 345 (431)
T PLN02218 291 IGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQG--GSGTASNIIFQNIQMENV 345 (431)
T ss_pred ECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCC--CCeEEEEEEEEeEEEEcc
Confidence 6 23555555422 236899999999999997
No 14
>PLN02155 polygalacturonase
Probab=99.33 E-value=7.2e-11 Score=108.08 Aligned_cols=100 Identities=12% Similarity=0.170 Sum_probs=77.7
Q ss_pred EEEEEecCCCceeceeEeccc----CeEEEEEceeeEEEEeeEEecCCCCCCCcceEecC-cccEEEEeeEEecCCCeeE
Q 042417 47 SIRFNFLNDSTITGIKSVDSR----YFHINILGCYNLKLNDLKITAHADSPNTEGIHIGS-SNGSEISHSVIATGDDCVS 121 (249)
Q Consensus 47 ~i~~~~~~nv~i~gi~i~ns~----~~~i~~~~s~nv~I~n~~i~~~~~~~n~DGi~~~~-s~nv~I~n~~i~~gDD~i~ 121 (249)
.+++.+|+|++|++++|.++. ..++++.+|+||+|+|+.|++. .|+|-+.+ |+||+|+||....|+ +|+
T Consensus 170 ~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~g-----DDcIaik~gs~nI~I~n~~c~~Gh-Gis 243 (394)
T PLN02155 170 HMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTG-----DDCVAIGPGTRNFLITKLACGPGH-GVS 243 (394)
T ss_pred EEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecC-----CceEEcCCCCceEEEEEEEEECCc-eEE
Confidence 788899999999999999843 2669999999999999999984 56777764 578888888777654 455
Q ss_pred e-------------------------CcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 122 L-------------------------GHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 122 i-------------------------g~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
| ..|+.|.+... +..+.|+||+|+|++|.+.
T Consensus 244 IGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~-~~gG~v~nI~f~ni~m~~v 299 (394)
T PLN02155 244 IGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWAR-PSTGFVRNVFFQDLVMKNV 299 (394)
T ss_pred eccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecC-CCCEEEEEEEEEeEEEcCc
Confidence 5 23566666311 1236799999999999998
No 15
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.33 E-value=8.8e-11 Score=107.91 Aligned_cols=101 Identities=17% Similarity=0.217 Sum_probs=77.1
Q ss_pred EEEEEecCCCceeceeEeccc----CeEEEEEceeeEEEEeeEEecCCCCCCCcceEec-CcccEEEEeeEEecCCCeeE
Q 042417 47 SIRFNFLNDSTITGIKSVDSR----YFHINILGCYNLKLNDLKITAHADSPNTEGIHIG-SSNGSEISHSVIATGDDCVS 121 (249)
Q Consensus 47 ~i~~~~~~nv~i~gi~i~ns~----~~~i~~~~s~nv~I~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gDD~i~ 121 (249)
.+++.+|++++|++++|.++. ...+++.+|+||+|+|++|++. .|+|.+. .++||+|+|+....|+ +|+
T Consensus 180 ~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~G-----DDcIaiksg~~nI~I~n~~c~~gh-Gis 253 (404)
T PLN02188 180 HIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTG-----DDCISIGQGNSQVTITRIRCGPGH-GIS 253 (404)
T ss_pred EEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCC-----CcEEEEccCCccEEEEEEEEcCCC-cEE
Confidence 788899999999999998743 3569999999999999999984 5677775 4567788777776554 355
Q ss_pred e-------------------------CcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 122 L-------------------------GHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 122 i-------------------------g~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
+ ..|+.|.+....+..+.++||+|+|++|.+.
T Consensus 254 iGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v 310 (404)
T PLN02188 254 VGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNV 310 (404)
T ss_pred eCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCc
Confidence 5 2466666642222236799999999999987
No 16
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.31 E-value=3.4e-11 Score=111.30 Aligned_cols=158 Identities=20% Similarity=0.254 Sum_probs=90.4
Q ss_pred cCCCceeceeEecccCeEEEEEcee----eEEEEeeEEecCCCCCCCcceEecCcccEEEEeeEEecCCCeeEe------
Q 042417 53 LNDSTITGIKSVDSRYFHINILGCY----NLKLNDLKITAHADSPNTEGIHIGSSNGSEISHSVIATGDDCVSL------ 122 (249)
Q Consensus 53 ~~nv~i~gi~i~ns~~~~i~~~~s~----nv~I~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD~i~i------ 122 (249)
++++.++|++|.++|+|.+.+...+ +..|+|.++-+.. -.++|||.+. ++-+|+||+++..||+|.+
T Consensus 328 ~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW-~~qtDGi~ly--~nS~i~dcF~h~nDD~iKlYhS~v~ 404 (582)
T PF03718_consen 328 GQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAW-YFQTDGIELY--PNSTIRDCFIHVNDDAIKLYHSNVS 404 (582)
T ss_dssp SEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE----CTT----B----TT-EEEEEEEEESS-SEE--STTEE
T ss_pred cceEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeE-EeccCCcccc--CCCeeeeeEEEecCchhheeecCcc
Confidence 4578899999999999999998555 5899999988743 3689999886 7888999999999999977
Q ss_pred -----------CcceEEccCCCCCCCCceEeEEEEeeEEEccceEEecCC--ccEEE-EeeeCCCCCCCcCCCCceeEEe
Q 042417 123 -----------GHGISVGSLGKGINDEEVVGLTVRNCTFTGTNIVTNNVE--NPIVI-DQLYCPYNKCNIKVPSQVKTSN 188 (249)
Q Consensus 123 -----------g~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~nI~~~nv~--~~i~i-~~~y~~~~~~~~~~~~~~~i~n 188 (249)
|.=+.+|.. +..++||+|+|+.+........+.. .+|.- ..+|.......... +..+|++
T Consensus 405 v~~~ViWk~~Ngpiiq~GW~-----pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~~~ad-p~~ti~~ 478 (582)
T PF03718_consen 405 VSNTVIWKNENGPIIQWGWT-----PRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMASTKTAD-PSTTIRN 478 (582)
T ss_dssp EEEEEEEE-SSS-SEE--CS--------EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS--BE-EEEEEEE
T ss_pred eeeeEEEecCCCCeEEeecc-----ccccCceEEeeeEEEeeeeecccCCCCceeEecccccccccCCCCCC-cccceee
Confidence 111333332 4568899999998886643444442 23333 34563322211112 3458999
Q ss_pred EEEEeEEEEccCC-----Cc---eecEEEEeEEEEEcCc
Q 042417 189 VRFNNIRGTSANK-----IP---CQNIGIGNINWVYNGV 219 (249)
Q Consensus 189 I~~~ni~g~~~~~-----~~---~~~i~~~nv~i~~~~g 219 (249)
++|+|+++.+... .| -+++.++|+++..-.+
T Consensus 479 ~~~~nv~~EG~~~~l~ri~plqn~~nl~ikN~~~~~w~~ 517 (582)
T PF03718_consen 479 MTFSNVRCEGMCPCLFRIYPLQNYDNLVIKNVHFESWNG 517 (582)
T ss_dssp EEEEEEEEECCE-ECEEE--SEEEEEEEEEEEEECEET-
T ss_pred EEEEeEEEecccceeEEEeecCCCcceEEEEeecccccC
Confidence 9999999887554 44 4567799999985443
No 17
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.23 E-value=5.8e-10 Score=103.35 Aligned_cols=99 Identities=18% Similarity=0.170 Sum_probs=79.5
Q ss_pred EEEEEecCCCceeceeEeccc----CeEEEEEceeeEEEEeeEEecCCCCCCCcceEecC-cccEEEEeeEEecCCCeeE
Q 042417 47 SIRFNFLNDSTITGIKSVDSR----YFHINILGCYNLKLNDLKITAHADSPNTEGIHIGS-SNGSEISHSVIATGDDCVS 121 (249)
Q Consensus 47 ~i~~~~~~nv~i~gi~i~ns~----~~~i~~~~s~nv~I~n~~i~~~~~~~n~DGi~~~~-s~nv~I~n~~i~~gDD~i~ 121 (249)
.+++.+|++++|++++|.++. ..++++.+|+||+|+|+.|.+. .|+|.+.+ |+||+|+||+...|+ +|+
T Consensus 163 ~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tG-----DDCIaiksgs~NI~I~n~~c~~GH-GIS 236 (456)
T PLN03003 163 HIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATG-----DDCIAINSGTSNIHISGIDCGPGH-GIS 236 (456)
T ss_pred EEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecC-----CCeEEeCCCCccEEEEeeEEECCC-CeE
Confidence 788999999999999999743 3569999999999999999984 57888764 679999999887665 577
Q ss_pred e-------------------------CcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 122 L-------------------------GHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 122 i-------------------------g~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
| ..|+.|.+... ..+.++||+|+|++|.+.
T Consensus 237 IGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~G--g~G~v~nItf~nI~m~nV 291 (456)
T PLN03003 237 IGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQG--GSGYARMITFNGITLDNV 291 (456)
T ss_pred EeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCC--CCeEEEEEEEEeEEecCc
Confidence 7 23666666522 235799999999999988
No 18
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.21 E-value=3e-10 Score=101.48 Aligned_cols=115 Identities=18% Similarity=0.261 Sum_probs=85.4
Q ss_pred HHHHHHHHhhcCCCCcEEEecCCeEE----------------------EE-----------EEEecCCCceeceeEeccc
Q 042417 21 FETAWREACNWDGIKSAVLVPPGKYL----------------------SI-----------RFNFLNDSTITGIKSVDSR 67 (249)
Q Consensus 21 iq~Ai~~a~~~~g~g~~v~iP~G~y~----------------------~i-----------~~~~~~nv~i~gi~i~ns~ 67 (249)
||+|+++| + + |.+|+||+|+|. .| .+..+++++|++++++++.
T Consensus 1 iQ~Ai~~A-~-~--GDtI~l~~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v~a~~VtI~~ltI~~~~ 76 (314)
T TIGR03805 1 LQEALIAA-Q-P--GDTIVLPEGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLVTSDDVTLSDLAVENTK 76 (314)
T ss_pred CHhHHhhC-C-C--CCEEEECCCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEEEeCCeEEEeeEEEcCC
Confidence 69999544 2 3 689999999996 11 1224788999999999999
Q ss_pred CeEEEEEceeeEEEEeeEEecCCC---CCCCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEE
Q 042417 68 YFHINILGCYNLKLNDLKITAHAD---SPNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLT 144 (249)
Q Consensus 68 ~~~i~~~~s~nv~I~n~~i~~~~~---~~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~ 144 (249)
.+.+.+..|++++|+++++..... ....+||.+..|++++|++|+++...| .||.++. -+++.
T Consensus 77 ~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d-----~GIyv~~---------s~~~~ 142 (314)
T TIGR03805 77 GDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASD-----AGIYVGQ---------SQNIV 142 (314)
T ss_pred CCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCc-----ccEEECC---------CCCeE
Confidence 999999999999999999974322 135789999999999999999988544 2443321 23566
Q ss_pred EEeeEEEcc
Q 042417 145 VRNCTFTGT 153 (249)
Q Consensus 145 v~n~~~~~~ 153 (249)
|+|+++.+.
T Consensus 143 v~nN~~~~n 151 (314)
T TIGR03805 143 VRNNVAEEN 151 (314)
T ss_pred EECCEEccC
Confidence 666666554
No 19
>PLN03010 polygalacturonase
Probab=99.12 E-value=5.2e-09 Score=96.25 Aligned_cols=99 Identities=19% Similarity=0.247 Sum_probs=70.6
Q ss_pred EEEEEecCCCceeceeEeccc----CeEEEEEceeeEEEEeeEEecCCCC----C-------------CCcceEecC---
Q 042417 47 SIRFNFLNDSTITGIKSVDSR----YFHINILGCYNLKLNDLKITAHADS----P-------------NTEGIHIGS--- 102 (249)
Q Consensus 47 ~i~~~~~~nv~i~gi~i~ns~----~~~i~~~~s~nv~I~n~~i~~~~~~----~-------------n~DGi~~~~--- 102 (249)
.+++.+|++++|++++|.++. ..++++..|+||+|+|+.|.+.++. . ..-||.+.+
T Consensus 182 ~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g~ 261 (409)
T PLN03010 182 HISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGA 261 (409)
T ss_pred EEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCCC
Confidence 788999999999999999853 2569999999999999999986541 0 112333322
Q ss_pred ------cccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 103 ------SNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 103 ------s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
-+||+|+||++...+ .|+.|.+... ..+.|+||+|+|++|.+.
T Consensus 262 ~~~~~~V~nV~v~n~~i~~t~------~GirIKt~~G--~~G~v~nItf~nI~m~~v 310 (409)
T PLN03010 262 DGANAKVSDVHVTHCTFNQTT------NGARIKTWQG--GQGYARNISFENITLINT 310 (409)
T ss_pred CCCCCeeEEEEEEeeEEeCCC------cceEEEEecC--CCEEEEEeEEEeEEEecC
Confidence 145555555555433 4666666522 235799999999999987
No 20
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=98.55 E-value=5e-07 Score=85.34 Aligned_cols=105 Identities=12% Similarity=0.190 Sum_probs=80.9
Q ss_pred EEEEEecCCCceeceeEecccC---eEEEEEceeeEEEEeeEEecCCCC------CCCcc-eEecCcccEEEEeeEEecC
Q 042417 47 SIRFNFLNDSTITGIKSVDSRY---FHINILGCYNLKLNDLKITAHADS------PNTEG-IHIGSSNGSEISHSVIATG 116 (249)
Q Consensus 47 ~i~~~~~~nv~i~gi~i~ns~~---~~i~~~~s~nv~I~n~~i~~~~~~------~n~DG-i~~~~s~nv~I~n~~i~~g 116 (249)
.+++..|+++++++++|.+... ..+.+..|+|+.|++++|+..++. ...|+ =....++++.|+||++..|
T Consensus 263 ~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~g 342 (542)
T COG5434 263 TVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSG 342 (542)
T ss_pred EEeeecccCceecceEEECCCCCCCCccccccceeEEEeccEEecCCceEEeecccCCcccccccccccEEEecceeccc
Confidence 8899999999999999986543 479999999999999999986542 22222 1233579999999999999
Q ss_pred CCeeEe---------------------CcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 117 DDCVSL---------------------GHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 117 DD~i~i---------------------g~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
+..+.+ ..||.|++.-.++ +.++||+|++..|.+.
T Consensus 343 hG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~g--G~v~nI~~~~~~~~nv 398 (542)
T COG5434 343 HGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRG--GGVRNIVFEDNKMRNV 398 (542)
T ss_pred ccceEeeeecCCceeEEEEEeeeeccCcceeeeeeecccc--eeEEEEEEecccccCc
Confidence 877777 4567777753332 6799999998887765
No 21
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=97.94 E-value=0.0001 Score=63.33 Aligned_cols=55 Identities=18% Similarity=0.157 Sum_probs=28.5
Q ss_pred EEecCCCceeceeEecccCeEEEEEceeeEEEEeeEEecCCCCCCCcceEecCcccEEEEeeEEe
Q 042417 50 FNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADSPNTEGIHIGSSNGSEISHSVIA 114 (249)
Q Consensus 50 ~~~~~nv~i~gi~i~ns~~~~i~~~~s~nv~I~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~ 114 (249)
+..|+|+.+.+..|. |---+-+++++.|+++.+.... .-|| +-++++.|+||.++
T Consensus 35 LKes~nI~~~~~~F~----~KYP~Wh~~~~~i~~~~f~~~a----Ra~i--WYs~~i~m~d~~i~ 89 (277)
T PF12541_consen 35 LKESRNIELKNCIFK----WKYPLWHSDNIKIENCYFTEMA----RAAI--WYSNNITMKDSVIQ 89 (277)
T ss_pred cccccceEEECCEEe----eECceEEECCeEEEeeEEeecc----eeee--eEeCCEEEEeeecc
Confidence 344555555555443 2222334567777777766532 1232 33466666666664
No 22
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=97.88 E-value=0.00014 Score=63.36 Aligned_cols=31 Identities=32% Similarity=0.571 Sum_probs=18.0
Q ss_pred eeeeecCccCCCccchHHHHHHHHHHHhhcCCCCcEEEecCCe
Q 042417 2 FNVKDFGAVADGIKDDSKAFETAWREACNWDGIKSAVLVPPGK 44 (249)
Q Consensus 2 ~~v~dfGA~gdg~~ddt~Aiq~Ai~~a~~~~g~g~~v~iP~G~ 44 (249)
+||.||-.. |=-++|.+|+.+ +.||++|+|-
T Consensus 35 vni~dy~~~-----dwiasfkqaf~e-------~qtvvvpagl 65 (464)
T PRK10123 35 VNINDYNPH-----DWIASFKQAFSE-------GQTVVVPAGL 65 (464)
T ss_pred eehhhcCcc-----cHHHHHHHHhcc-------CcEEEecCcc
Confidence 566676432 345678888843 3455555553
No 23
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=97.84 E-value=0.00047 Score=59.27 Aligned_cols=146 Identities=15% Similarity=0.162 Sum_probs=79.9
Q ss_pred EEecCCCceeceeEecccCeEEEEEceeeEEEEeeEEecCCCCCCCcceE------------ecCcccEEEEeeEEecCC
Q 042417 50 FNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADSPNTEGIH------------IGSSNGSEISHSVIATGD 117 (249)
Q Consensus 50 ~~~~~nv~i~gi~i~ns~~~~i~~~~s~nv~I~n~~i~~~~~~~n~DGi~------------~~~s~nv~I~n~~i~~gD 117 (249)
|++++++.+++.++.....-. +-+++++.++|+.|++|..-+..++|. ++.|++|.++|+.+ .||
T Consensus 54 ~Wh~~~~~i~~~~f~~~aRa~--iWYs~~i~m~d~~i~apK~fR~~~~i~L~nv~~~~A~Et~W~c~~i~l~nv~~-~gd 130 (277)
T PF12541_consen 54 LWHSDNIKIENCYFTEMARAA--IWYSNNITMKDSVIQAPKMFRECSNITLENVDIPDADETLWNCRGIKLKNVQA-NGD 130 (277)
T ss_pred eEEECCeEEEeeEEeecceee--eeEeCCEEEEeeeccCchHhhcccCcEEEeeEeCCCcccCEEeCCeEEEeEEE-ece
Confidence 456788888887776533222 234667777777777765333222222 23578888888887 343
Q ss_pred CeeEe-CcceEEc---cCCCCCCCCceEeEEEEeeEEEcc-------ceEEecCCccEEEEeeeCCCCCCCcCCCCceeE
Q 042417 118 DCVSL-GHGISVG---SLGKGINDEEVVGLTVRNCTFTGT-------NIVTNNVENPIVIDQLYCPYNKCNIKVPSQVKT 186 (249)
Q Consensus 118 D~i~i-g~Gi~iG---s~g~~~~~~~v~ni~v~n~~~~~~-------nI~~~nv~~~i~i~~~y~~~~~~~~~~~~~~~i 186 (249)
-+.+ +..|.+- +.|.|. -.+++||.|+|+++..- ||++.+- .|+..|-. =.=
T Consensus 131 -Yf~m~s~ni~id~l~~~GnY~-Fq~~kNvei~ns~l~sKDAFWn~eNVtVyDS----~i~GEYLg-----------W~S 193 (277)
T PF12541_consen 131 -YFFMNSENIYIDNLVLDGNYS-FQYCKNVEIHNSKLDSKDAFWNCENVTVYDS----VINGEYLG-----------WNS 193 (277)
T ss_pred -EeeeeccceEEeceEEeCCEE-eeceeeEEEEccEEecccccccCCceEEEcc----eEeeeEEE-----------EEc
Confidence 3333 2222221 123331 24677888888776644 6666553 23333321 133
Q ss_pred EeEEEEeEEEEccCC-CceecEEEEeEEEE
Q 042417 187 SNVRFNNIRGTSANK-IPCQNIGIGNINWV 215 (249)
Q Consensus 187 ~nI~~~ni~g~~~~~-~~~~~i~~~nv~i~ 215 (249)
+||+|.|-++.+..+ =-|++++|+|.++.
T Consensus 194 kNltliNC~I~g~QpLCY~~~L~l~nC~~~ 223 (277)
T PF12541_consen 194 KNLTLINCTIEGTQPLCYCDNLVLENCTMI 223 (277)
T ss_pred CCeEEEEeEEeccCccEeecceEEeCcEee
Confidence 567777766666544 33566666666665
No 24
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=97.75 E-value=0.0017 Score=58.10 Aligned_cols=72 Identities=13% Similarity=0.175 Sum_probs=59.7
Q ss_pred EEEEEecCCCceeceeEec-------ccCeEEEEEceeeEEEEeeEEecCCCCCCCcceEecCcccEEEEeeEEecCCCe
Q 042417 47 SIRFNFLNDSTITGIKSVD-------SRYFHINILGCYNLKLNDLKITAHADSPNTEGIHIGSSNGSEISHSVIATGDDC 119 (249)
Q Consensus 47 ~i~~~~~~nv~i~gi~i~n-------s~~~~i~~~~s~nv~I~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD~ 119 (249)
.|.+..+++++|+++++.. ...+.+.+..|++++|+++++... ..+||.+..|++++|+++++.....+
T Consensus 79 GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~----~d~GIyv~~s~~~~v~nN~~~~n~~G 154 (314)
T TIGR03805 79 GVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGA----SDAGIYVGQSQNIVVRNNVAEENVAG 154 (314)
T ss_pred eEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECC----CcccEEECCCCCeEEECCEEccCcce
Confidence 6777889999999999862 346889999999999999999874 23589998889999999999877766
Q ss_pred eEe
Q 042417 120 VSL 122 (249)
Q Consensus 120 i~i 122 (249)
|-+
T Consensus 155 I~i 157 (314)
T TIGR03805 155 IEI 157 (314)
T ss_pred EEE
Confidence 666
No 25
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=97.67 E-value=0.0023 Score=56.10 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=64.9
Q ss_pred CccCCCccchHHHHHHHHHHHhhcCCCCcE-EEecCCeEE-------EEEEEecCCCceeceeEe-cccCeEEEEEceee
Q 042417 8 GAVADGIKDDSKAFETAWREACNWDGIKSA-VLVPPGKYL-------SIRFNFLNDSTITGIKSV-DSRYFHINILGCYN 78 (249)
Q Consensus 8 GA~gdg~~ddt~Aiq~Ai~~a~~~~g~g~~-v~iP~G~y~-------~i~~~~~~nv~i~gi~i~-ns~~~~i~~~~s~n 78 (249)
|+.||.++--|++...-... +.| .-+ ++.-+|+=. .+.+.-+.|.+|.|+--. ---.|.+.+..++|
T Consensus 51 G~~g~~v~v~ta~~l~~~~s---a~~-~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~g~gl~i~~a~N 126 (345)
T COG3866 51 GSGGDIVTVRTANDLETYLS---ASG-KYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLVGGGLKIRDAGN 126 (345)
T ss_pred CCCCcEEEEeeHHHHHHHhh---ccC-ceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEEeceEEEEeCCc
Confidence 45566666666554332212 233 222 333445411 245555666666654211 12258889988999
Q ss_pred EEEEeeEEecCC-CCCCCcceEe-cCcccEEEEeeEEec
Q 042417 79 LKLNDLKITAHA-DSPNTEGIHI-GSSNGSEISHSVIAT 115 (249)
Q Consensus 79 v~I~n~~i~~~~-~~~n~DGi~~-~~s~nv~I~n~~i~~ 115 (249)
|.|+|++|..-. ..|+-|+|.+ ..++||+|++|+|..
T Consensus 127 VIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~ 165 (345)
T COG3866 127 VIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSG 165 (345)
T ss_pred EEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEecc
Confidence 999999998632 3355699999 788999999999987
No 26
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.57 E-value=0.0015 Score=55.74 Aligned_cols=82 Identities=23% Similarity=0.358 Sum_probs=52.6
Q ss_pred CcEEEecCCeEE------------------EEEEEecCCCceeceeEecccCeEEEEEceeeEEEEeeEEecCCCCCCCc
Q 042417 35 KSAVLVPPGKYL------------------SIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADSPNTE 96 (249)
Q Consensus 35 g~~v~iP~G~y~------------------~i~~~~~~nv~i~gi~i~ns~~~~i~~~~s~nv~I~n~~i~~~~~~~n~D 96 (249)
|.++++..|.|+ .+.+..+.+++|++.++.+. .+.+++..+.+++|++..+.. +..
T Consensus 7 G~~i~~~~Gi~l~~~~~~~i~~n~i~~~~~gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~-----n~~ 80 (236)
T PF05048_consen 7 GDTIFVSNGIYLWNSSNNSIENNTISNSRDGIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISN-----NGY 80 (236)
T ss_pred CCeEEEcCcEEEEeCCCCEEEcCEEEeCCCEEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEc-----cCC
Confidence 578888888765 44556666666666666665 566666666666666666665 235
Q ss_pred ceEecCcccEEEEeeEEecCCCeeEe
Q 042417 97 GIHIGSSNGSEISHSVIATGDDCVSL 122 (249)
Q Consensus 97 Gi~~~~s~nv~I~n~~i~~gDD~i~i 122 (249)
||.+..+.+..|+++.|.....+|.+
T Consensus 81 Gi~l~~s~~~~I~~N~i~~n~~GI~l 106 (236)
T PF05048_consen 81 GIYLMGSSNNTISNNTISNNGYGIYL 106 (236)
T ss_pred CEEEEcCCCcEEECCEecCCCceEEE
Confidence 66666666556666666655444433
No 27
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.51 E-value=0.00051 Score=53.82 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=51.1
Q ss_pred EEEEecCCCceeceeEecccCeEEEEEceeeEEEEeeEEecCCCCCCCcceEecCcccEEEEeeEEecCC
Q 042417 48 IRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADSPNTEGIHIGSSNGSEISHSVIATGD 117 (249)
Q Consensus 48 i~~~~~~nv~i~gi~i~ns~~~~i~~~~s~nv~I~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gD 117 (249)
|.+....+++|++.+|.+...+.+.+..+..++|++++|.. ...|+.+....++.+++|.+....
T Consensus 3 i~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~ 67 (158)
T PF13229_consen 3 ISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNG 67 (158)
T ss_dssp EEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-S
T ss_pred EEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEcc
Confidence 56777788999999999999999999999899999999987 466888888889999999998765
No 28
>smart00656 Amb_all Amb_all domain.
Probab=97.19 E-value=0.0021 Score=53.37 Aligned_cols=48 Identities=19% Similarity=0.215 Sum_probs=36.1
Q ss_pred eEEEEEceeeEEEEeeEEecCCCC--CCCcceEecCcccEEEEeeEEecC
Q 042417 69 FHINILGCYNLKLNDLKITAHADS--PNTEGIHIGSSNGSEISHSVIATG 116 (249)
Q Consensus 69 ~~i~~~~s~nv~I~n~~i~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~g 116 (249)
+.+.+..++||.|+|++|...... .+.|+|.+..+++|+|.+|.|..+
T Consensus 32 ~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~ 81 (190)
T smart00656 32 GGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGC 81 (190)
T ss_pred eEEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcc
Confidence 455666677888888888875331 367888888888888888888875
No 29
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=97.13 E-value=0.0082 Score=51.77 Aligned_cols=99 Identities=21% Similarity=0.240 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEecCCeEE-------EEEE------EecCC------Cceec----eeEec-cc---CeE
Q 042417 18 SKAFETAWREACNWDGIKSAVLVPPGKYL-------SIRF------NFLND------STITG----IKSVD-SR---YFH 70 (249)
Q Consensus 18 t~Aiq~Ai~~a~~~~g~g~~v~iP~G~y~-------~i~~------~~~~n------v~i~g----i~i~n-s~---~~~ 70 (249)
-+.|++|++.|. . |.+|++-+|+|. .|.+ .+-+. +.+.+ ..+.- ++ .-.
T Consensus 15 ~~Ti~~A~~~a~--~--g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn 90 (246)
T PF07602_consen 15 FKTITKALQAAQ--P--GDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQN 90 (246)
T ss_pred HHHHHHHHHhCC--C--CCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCcccccee
Confidence 356999995442 3 679999999997 2222 21111 11111 11111 11 122
Q ss_pred EEEEceeeEEEEeeEEecCCCCCCCcceEecCcccEEEEeeEEec-CCCeeEe
Q 042417 71 INILGCYNLKLNDLKITAHADSPNTEGIHIGSSNGSEISHSVIAT-GDDCVSL 122 (249)
Q Consensus 71 i~~~~s~nv~I~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-gDD~i~i 122 (249)
+.+....+..|++++|.++.. .-.-|+.+.++ +.+|+||+|.. +.++|.+
T Consensus 91 ~tI~~~~~~~i~GvtItN~n~-~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v 141 (246)
T PF07602_consen 91 VTIILANNATISGVTITNPNI-ARGTGIWIESS-SPTIANNTFTNNGREGIFV 141 (246)
T ss_pred EEEEecCCCEEEEEEEEcCCC-CcceEEEEecC-CcEEEeeEEECCccccEEE
Confidence 444556788899999998632 13457888876 99999999987 3445544
No 30
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=96.99 E-value=0.0094 Score=55.09 Aligned_cols=93 Identities=13% Similarity=0.170 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHhhcCCCCcEEEecCCeEE--------------------------------EEEEEecCCCceeceeEe
Q 042417 17 DSKAFETAWREACNWDGIKSAVLVPPGKYL--------------------------------SIRFNFLNDSTITGIKSV 64 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~~g~g~~v~iP~G~y~--------------------------------~i~~~~~~nv~i~gi~i~ 64 (249)
+.++||+|++.|. + |.+|+++.|+|. .|.+. .+.++|+|+.|+
T Consensus 3 s~~~lq~Ai~~a~--p--GD~I~L~~Gty~~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i~-G~yl~v~GL~F~ 77 (425)
T PF14592_consen 3 SVAELQSAIDNAK--P--GDTIVLADGTYKDVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRIS-GSYLVVSGLKFK 77 (425)
T ss_dssp SHHHHHHHHHH----T--T-EEEE-SEEEET-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES-EEE
T ss_pred CHHHHHHHHHhCC--C--CCEEEECCceeecceEEEEecccCCCCEEEEecCCCeEEEecceeEEEE-eeeEEEeCeEEe
Confidence 5689999996543 3 689999999998 33443 578888888888
Q ss_pred cc--cC--e---EEEE--EceeeEEEEeeEEecCCCCCCCcceEec------CcccEEEEeeEEec
Q 042417 65 DS--RY--F---HINI--LGCYNLKLNDLKITAHADSPNTEGIHIG------SSNGSEISHSVIAT 115 (249)
Q Consensus 65 ns--~~--~---~i~~--~~s~nv~I~n~~i~~~~~~~n~DGi~~~------~s~nv~I~n~~i~~ 115 (249)
+. |. | .... ..+.+.++.++.|+.-. .+..+.-+.+ ..++-+|++|+|..
T Consensus 78 ng~~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn-~~~~~~~~~wv~~~~l~G~~NrvDhn~F~g 142 (425)
T PF14592_consen 78 NGYTPTGAVISFRNGGDASYANHCRLTNCVIDDFN-NPDREESDNWVTIYSLYGKHNRVDHNYFQG 142 (425)
T ss_dssp EE---TTT--TTS--SEEE-SSS-EEES-EEES---SS-S-SEEE---TT-----S-EEES-EEE-
T ss_pred cCCCCCCceEEeecCCCcceecceEEEeEEeeccC-CcccccCceEEEEEEeeccCceEEccEeec
Confidence 63 21 1 1111 24667888888887522 1222221111 24677777777755
No 31
>smart00656 Amb_all Amb_all domain.
Probab=96.61 E-value=0.19 Score=41.68 Aligned_cols=100 Identities=15% Similarity=0.204 Sum_probs=68.7
Q ss_pred EEEEEecCCCceeceeEecccC------eEEEEEceeeEEEEeeEEecCCC----CCCCcce-Eec-CcccEEEEeeEEe
Q 042417 47 SIRFNFLNDSTITGIKSVDSRY------FHINILGCYNLKLNDLKITAHAD----SPNTEGI-HIG-SSNGSEISHSVIA 114 (249)
Q Consensus 47 ~i~~~~~~nv~i~gi~i~ns~~------~~i~~~~s~nv~I~n~~i~~~~~----~~n~DGi-~~~-~s~nv~I~n~~i~ 114 (249)
.|.+..++|+.|++|+|++... ..+.+..+++|-|++|++..... ....||+ ++. .+.+++|.+|.|.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 4777779999999999998543 57888999999999999987411 1124564 554 4789999999997
Q ss_pred cCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 115 TGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 115 ~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
..+- ++-+|+.-.. +.....+|++.++.|.+.
T Consensus 113 ~h~~------~~liG~~d~~-~~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 113 NHWK------VMLLGHSDSD-TDDGKMRVTIAHNYFGNL 144 (190)
T ss_pred cCCE------EEEEccCCCc-cccccceEEEECcEEcCc
Confidence 5432 3444542111 112255788888877754
No 32
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=96.52 E-value=0.0081 Score=50.30 Aligned_cols=47 Identities=26% Similarity=0.438 Sum_probs=26.6
Q ss_pred EEEEE-ceeeEEEEeeEEecC-----------CCCCCCcceEecCcccEEEEeeEEecC
Q 042417 70 HINIL-GCYNLKLNDLKITAH-----------ADSPNTEGIHIGSSNGSEISHSVIATG 116 (249)
Q Consensus 70 ~i~~~-~s~nv~I~n~~i~~~-----------~~~~n~DGi~~~~s~nv~I~n~~i~~g 116 (249)
.+.+. .++||.|+|++|... ......|+|.+..++||+|.+|.|..+
T Consensus 38 G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~ 96 (200)
T PF00544_consen 38 GLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWG 96 (200)
T ss_dssp EEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEET
T ss_pred eEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEecc
Confidence 33443 667777777777651 112356777777777777777777665
No 33
>PLN02480 Probable pectinesterase
Probab=96.47 E-value=0.086 Score=47.75 Aligned_cols=121 Identities=12% Similarity=0.049 Sum_probs=71.0
Q ss_pred chHHHHHHHHHHHhhcCCC-CcEEEecCCeEE-EEEEE-ecCCCceec-----eeEeccc------CeEEEEEceeeEEE
Q 042417 16 DDSKAFETAWREACNWDGI-KSAVLVPPGKYL-SIRFN-FLNDSTITG-----IKSVDSR------YFHINILGCYNLKL 81 (249)
Q Consensus 16 ddt~Aiq~Ai~~a~~~~g~-g~~v~iP~G~y~-~i~~~-~~~nv~i~g-----i~i~ns~------~~~i~~~~s~nv~I 81 (249)
.|-..||+||+ +...... .-+|+|.+|+|. .+.+. ...++++.| ..|.... .-......++++++
T Consensus 58 g~f~TIQ~AId-aap~~~~~~~~I~Ik~GvY~E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV~a~~f~a 136 (343)
T PLN02480 58 GDFTSVQSAID-AVPVGNSEWIIVHLRKGVYREKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTVEAPHFVA 136 (343)
T ss_pred CCcccHHHHHh-hCccCCCceEEEEEcCcEEEEEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEEECCCEEE
Confidence 46789999995 4433210 124789999998 33332 233455542 2222111 11222345678999
Q ss_pred EeeEEecCCCC-----CCCcceEe-cCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 82 NDLKITAHADS-----PNTEGIHI-GSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 82 ~n~~i~~~~~~-----~n~DGi~~-~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
+|++|.+.... ...-++-+ ..++++.+++|.|....|-+-... -.-+++||.++++
T Consensus 137 ~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~----------------gR~yf~~C~IeG~ 198 (343)
T PLN02480 137 FGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK----------------GRHYYHSCYIQGS 198 (343)
T ss_pred EeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC----------------CCEEEEeCEEEee
Confidence 99999886321 12234444 235899999999998877765311 1246777887776
No 34
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=96.41 E-value=0.016 Score=45.12 Aligned_cols=64 Identities=19% Similarity=0.257 Sum_probs=39.6
Q ss_pred EEEEEecCCCceeceeEecccCeEEEEEceeeEEEEeeEEecCCCCCCCcceEecCcccEEEEeeEEecC
Q 042417 47 SIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADSPNTEGIHIGSSNGSEISHSVIATG 116 (249)
Q Consensus 47 ~i~~~~~~nv~i~gi~i~ns~~~~i~~~~s~nv~I~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~g 116 (249)
.|.+..+..++|++.+|.+ ....+.+....++.++++.+.... .|+.+..+..++|++|.+...
T Consensus 25 gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~~-----~~i~~~~~~~~~i~~~~i~~~ 88 (158)
T PF13229_consen 25 GIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDNG-----SGIYVSGSSNITIENNRIENN 88 (158)
T ss_dssp CEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES-S-----EEEECCS-CS-EEES-EEECS
T ss_pred EEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEcc-----ceEEEEecCCceecCcEEEcC
Confidence 5677777777777777777 556677777777788888777632 566666667777777777664
No 35
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=96.39 E-value=0.035 Score=46.47 Aligned_cols=99 Identities=17% Similarity=0.227 Sum_probs=64.1
Q ss_pred EEE-EecCCCceeceeEecc---------------cCeEEEEEceeeEEEEeeEEecCCCC---CCCcc-eEec-CcccE
Q 042417 48 IRF-NFLNDSTITGIKSVDS---------------RYFHINILGCYNLKLNDLKITAHADS---PNTEG-IHIG-SSNGS 106 (249)
Q Consensus 48 i~~-~~~~nv~i~gi~i~ns---------------~~~~i~~~~s~nv~I~n~~i~~~~~~---~n~DG-i~~~-~s~nv 106 (249)
+.+ .+++|+.|++++|+.. ....+.+..++||-|++|++...... ...|| +|+. .+.+|
T Consensus 39 ~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~v 118 (200)
T PF00544_consen 39 LRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNV 118 (200)
T ss_dssp EEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEE
T ss_pred EEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceE
Confidence 344 4899999999999982 33458888999999999999875211 12555 6775 57999
Q ss_pred EEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 107 EISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 107 ~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
+|.+|.|...+.+ .-+|+......... .++++-.+.|.++
T Consensus 119 TiS~n~f~~~~k~------~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 119 TISNNIFDNHNKT------MLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp EEES-EEEEEEET------CEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred EEEchhccccccc------cccCCCCCccccCC-ceEEEEeEEECch
Confidence 9999999865433 33444211112234 8899998888765
No 36
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=96.06 E-value=0.085 Score=44.85 Aligned_cols=70 Identities=20% Similarity=0.196 Sum_probs=60.7
Q ss_pred EEEEEecCCCceeceeEecccCeEEEEEceeeEEEEeeEEecCCCCCCCcceEecCcccEEEEeeEEecCCCeeEe
Q 042417 47 SIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADSPNTEGIHIGSSNGSEISHSVIATGDDCVSL 122 (249)
Q Consensus 47 ~i~~~~~~nv~i~gi~i~ns~~~~i~~~~s~nv~I~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD~i~i 122 (249)
.|.+.++++..|++.++.+. ...+.+..+.+++|++.+|.. +..||++..+++.+|+++.+.....+|.+
T Consensus 15 Gi~l~~~~~~~i~~n~i~~~-~~gi~~~~s~~~~I~~n~i~~-----~~~GI~~~~s~~~~i~~n~i~~n~~Gi~l 84 (236)
T PF05048_consen 15 GIYLWNSSNNSIENNTISNS-RDGIYVENSDNNTISNNTISN-----NRYGIHLMGSSNNTIENNTISNNGYGIYL 84 (236)
T ss_pred cEEEEeCCCCEEEcCEEEeC-CCEEEEEEcCCeEEEeeEEEC-----CCeEEEEEccCCCEEEeEEEEccCCCEEE
Confidence 67888999999999999866 456688899999999999987 47799999999999999999987677776
No 37
>PLN02432 putative pectinesterase
Probab=95.91 E-value=0.29 Score=43.39 Aligned_cols=119 Identities=16% Similarity=0.082 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHhhcCC-CCcEEEecCCeEE-EEEE-EecCCCceec-----eeEecccCe-----EEEEEceeeEEEEe
Q 042417 17 DSKAFETAWREACNWDG-IKSAVLVPPGKYL-SIRF-NFLNDSTITG-----IKSVDSRYF-----HINILGCYNLKLND 83 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~~g-~g~~v~iP~G~y~-~i~~-~~~~nv~i~g-----i~i~ns~~~-----~i~~~~s~nv~I~n 83 (249)
|-..||+||+ ++.... ..-+|+|.+|+|. .+.+ ....++++.| ..|.-...+ ......++++..+|
T Consensus 22 ~f~TIq~Aid-a~p~~~~~~~~I~I~~G~Y~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v~a~~f~a~n 100 (293)
T PLN02432 22 DFRKIQDAID-AVPSNNSQLVFIWVKPGIYREKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSVLASDFVGRF 100 (293)
T ss_pred CccCHHHHHh-hccccCCceEEEEEeCceeEEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEEECCCeEEEe
Confidence 5788999995 544321 0347889999998 2222 1234444443 112111111 12234567899999
Q ss_pred eEEecCCCC-CCCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 84 LKITAHADS-PNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 84 ~~i~~~~~~-~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
++|.+.... ..+-++.+. .....+.+|.|....|.+-...| .-+++||.++++
T Consensus 101 lt~~Nt~g~~~QAvAl~v~-gDr~~f~~c~~~G~QDTLy~~~g----------------r~yf~~c~I~G~ 154 (293)
T PLN02432 101 LTIQNTFGSSGKAVALRVA-GDRAAFYGCRILSYQDTLLDDTG----------------RHYYRNCYIEGA 154 (293)
T ss_pred eEEEeCCCCCCceEEEEEc-CCcEEEEcceEecccceeEECCC----------------CEEEEeCEEEec
Confidence 999875421 234455554 48999999999987777654111 246777777777
No 38
>PLN02773 pectinesterase
Probab=95.71 E-value=0.44 Score=42.75 Aligned_cols=104 Identities=14% Similarity=0.144 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHhhc-CCCCcEEEecCCeEE-EEEEEe-cCCCceec-----eeEe-c-c---------c---Ce-----
Q 042417 17 DSKAFETAWREACNW-DGIKSAVLVPPGKYL-SIRFNF-LNDSTITG-----IKSV-D-S---------R---YF----- 69 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~-~g~g~~v~iP~G~y~-~i~~~~-~~nv~i~g-----i~i~-n-s---------~---~~----- 69 (249)
|-..||+||+ +... +...-+|+|.+|+|. .+.+.. ..++++.| ..|. + . . .+
T Consensus 16 df~TIq~Aid-a~P~~~~~~~~I~Ik~G~Y~E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~S 94 (317)
T PLN02773 16 DYCTVQDAID-AVPLCNRCRTVIRVAPGVYRQPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGC 94 (317)
T ss_pred CccCHHHHHh-hchhcCCceEEEEEeCceEEEEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCc
Confidence 4778999995 4433 210347889999998 223322 23444433 1111 1 0 0 01
Q ss_pred EEEEEceeeEEEEeeEEecCCCC--CCCcceEecCcccEEEEeeEEecCCCeeEe
Q 042417 70 HINILGCYNLKLNDLKITAHADS--PNTEGIHIGSSNGSEISHSVIATGDDCVSL 122 (249)
Q Consensus 70 ~i~~~~s~nv~I~n~~i~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~i~i 122 (249)
......++++..+|++|.+.... ..+-++.+. +..+.+.+|.|....|.+..
T Consensus 95 aTv~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~-gDr~~f~~c~~~G~QDTL~~ 148 (317)
T PLN02773 95 GTVIVEGEDFIAENITFENSAPEGSGQAVAIRVT-ADRCAFYNCRFLGWQDTLYL 148 (317)
T ss_pred eEEEEECCCeEEEeeEEEeCCCCCCCcEEEEEec-CccEEEEccEeecccceeEe
Confidence 12334578999999999986432 244556665 48899999999988887765
No 39
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=95.60 E-value=0.076 Score=49.43 Aligned_cols=76 Identities=17% Similarity=0.015 Sum_probs=64.5
Q ss_pred EEEEEecCCCceeceeEecccCeEEEEEcee----------------------eEEEEeeEEecCCC-------------
Q 042417 47 SIRFNFLNDSTITGIKSVDSRYFHINILGCY----------------------NLKLNDLKITAHAD------------- 91 (249)
Q Consensus 47 ~i~~~~~~nv~i~gi~i~ns~~~~i~~~~s~----------------------nv~I~n~~i~~~~~------------- 91 (249)
.|++..|++++|++++|+++..|.+.+..|+ +..|++-+|....+
T Consensus 137 gI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~d 216 (455)
T TIGR03808 137 LIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDD 216 (455)
T ss_pred EEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecceEeccccceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCC
Confidence 5777899999999999999998999999998 88888877765443
Q ss_pred -------------------CCCCcceEecCcccEEEEeeEEecCC-CeeEe
Q 042417 92 -------------------SPNTEGIHIGSSNGSEISHSVIATGD-DCVSL 122 (249)
Q Consensus 92 -------------------~~n~DGi~~~~s~nv~I~n~~i~~gD-D~i~i 122 (249)
....+||+++.+.+++|++.+|+..+ |+|-+
T Consensus 217 g~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~ 267 (455)
T TIGR03808 217 GTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRG 267 (455)
T ss_pred cceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEE
Confidence 23468999999999999999999988 88876
No 40
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=95.53 E-value=0.021 Score=38.15 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=13.3
Q ss_pred ccCCCccchHHHHHHHHH
Q 042417 9 AVADGIKDDSKAFETAWR 26 (249)
Q Consensus 9 A~gdg~~ddt~Aiq~Ai~ 26 (249)
|+|||++|||+||.+|+.
T Consensus 1 A~GDGvtdDt~A~~a~l~ 18 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALE 18 (67)
T ss_dssp ---CCCCE-HHHHHHHHH
T ss_pred CCCccccCcHHHHHHHHh
Confidence 799999999999999994
No 41
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=95.20 E-value=0.17 Score=42.03 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=28.5
Q ss_pred eeceeEecccC------eEEEEEceeeEEEEeeEEecCCCCCCCcceEec
Q 042417 58 ITGIKSVDSRY------FHINILGCYNLKLNDLKITAHADSPNTEGIHIG 101 (249)
Q Consensus 58 i~gi~i~ns~~------~~i~~~~s~nv~I~n~~i~~~~~~~n~DGi~~~ 101 (249)
+++++|..... -.+++..++++.|+++++... +.+|+.+.
T Consensus 96 i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~----~~~~i~~~ 141 (225)
T PF12708_consen 96 IRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENS----GGDGIYFN 141 (225)
T ss_dssp EEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEE
T ss_pred EEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEcc----CccEEEEE
Confidence 88888876432 458888899999999999863 34555554
No 42
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=95.17 E-value=0.24 Score=47.01 Aligned_cols=61 Identities=25% Similarity=0.340 Sum_probs=34.1
Q ss_pred EEEEEecCC----CceeceeEecccCeE---EEEEceeeEEEEeeEEecCCCCCCCcceEecCcccEEEEeeEEec
Q 042417 47 SIRFNFLND----STITGIKSVDSRYFH---INILGCYNLKLNDLKITAHADSPNTEGIHIGSSNGSEISHSVIAT 115 (249)
Q Consensus 47 ~i~~~~~~n----v~i~gi~i~ns~~~~---i~~~~s~nv~I~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~ 115 (249)
.+.+.+.++ ..|++.++..+-+|. +.+ +.+-+|+||.+.+ |.|+|.+.. .++.|++|.+..
T Consensus 345 Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~l--y~nS~i~dcF~h~-----nDD~iKlYh-S~v~v~~~ViWk 412 (582)
T PF03718_consen 345 SMDLYGNENDKFSMNISNYKQVGAWYFQTDGIEL--YPNSTIRDCFIHV-----NDDAIKLYH-SNVSVSNTVIWK 412 (582)
T ss_dssp SEEEESSSGGGEEEEEEEEEEE---CTT----B----TT-EEEEEEEEE-----SS-SEE--S-TTEEEEEEEEEE
T ss_pred eEEecCCccccccceeeceeeeeeEEeccCCccc--cCCCeeeeeEEEe-----cCchhheee-cCcceeeeEEEe
Confidence 567775553 567787777654433 333 3566788888887 567776665 567777776654
No 43
>PLN02304 probable pectinesterase
Probab=95.03 E-value=0.8 Score=42.01 Aligned_cols=119 Identities=13% Similarity=0.158 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHhhc-CCCCcEEEecCCeEE-EEEEE-ecCCCceec-----eeEe--ccc-----Ce--EEEEEceeeE
Q 042417 17 DSKAFETAWREACNW-DGIKSAVLVPPGKYL-SIRFN-FLNDSTITG-----IKSV--DSR-----YF--HINILGCYNL 79 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~-~g~g~~v~iP~G~y~-~i~~~-~~~nv~i~g-----i~i~--ns~-----~~--~i~~~~s~nv 79 (249)
|-..||+||+ +... +...-+|+|.+|+|. .+.+. ...++++.| ..|. ++. -+ .......+++
T Consensus 86 df~TIQ~AId-avP~~~~~r~vI~Ik~GvY~EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v~a~~F 164 (379)
T PLN02304 86 NFTTVQSAVD-AVGNFSQKRNVIWINSGIYYEKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQVFASNF 164 (379)
T ss_pred CccCHHHHHh-hCcccCCCcEEEEEeCeEeEEEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEEECCCe
Confidence 4678999995 4432 110347889999997 22222 334555543 1121 111 01 1223456788
Q ss_pred EEEeeEEecCCCC-------CCCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEc
Q 042417 80 KLNDLKITAHADS-------PNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTG 152 (249)
Q Consensus 80 ~I~n~~i~~~~~~-------~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~ 152 (249)
..+|++|.+.... ..+-++.+. +....+.+|.|....|.+-... + .-+++||.+++
T Consensus 165 ~a~nITf~Nta~~~~~g~~~~QAVAL~v~-gDra~fy~C~f~G~QDTLy~~~-------------g---R~Yf~~CyIeG 227 (379)
T PLN02304 165 IAKNISFMNVAPIPKPGDVGAQAVAIRIA-GDQAAFWGCGFFGAQDTLHDDR-------------G---RHYFKDCYIQG 227 (379)
T ss_pred EEEeeEEEecCCCCCCCCCCccEEEEEec-CCcEEEEeceEecccceeEeCC-------------C---CEEEEeeEEcc
Confidence 9999999875421 123445555 4899999999998877765311 1 34678888888
Q ss_pred c
Q 042417 153 T 153 (249)
Q Consensus 153 ~ 153 (249)
+
T Consensus 228 ~ 228 (379)
T PLN02304 228 S 228 (379)
T ss_pred c
Confidence 7
No 44
>PLN02682 pectinesterase family protein
Probab=94.83 E-value=0.73 Score=42.16 Aligned_cols=119 Identities=12% Similarity=0.149 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHhhcC-CCCcEEEecCCeEE-EEEEE-ecCCCceec-----eeEe--cccC--------e-----EEEE
Q 042417 17 DSKAFETAWREACNWD-GIKSAVLVPPGKYL-SIRFN-FLNDSTITG-----IKSV--DSRY--------F-----HINI 73 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~~-g~g~~v~iP~G~y~-~i~~~-~~~nv~i~g-----i~i~--ns~~--------~-----~i~~ 73 (249)
|-..||+||+ +.... ...-+|+|.+|+|. .+.+. ...++++.| ..|. ++.. + ....
T Consensus 81 df~TIQ~AId-avP~~~~~r~vI~Ik~G~Y~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~ 159 (369)
T PLN02682 81 DFTTIQAAID-SLPVINLVRVVIKVNAGTYREKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFA 159 (369)
T ss_pred CccCHHHHHh-hccccCCceEEEEEeCceeeEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEE
Confidence 5678999995 54332 10347889999998 23332 234555543 2221 0000 1 1233
Q ss_pred EceeeEEEEeeEEecCCCC-------CCCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEE
Q 042417 74 LGCYNLKLNDLKITAHADS-------PNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVR 146 (249)
Q Consensus 74 ~~s~nv~I~n~~i~~~~~~-------~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~ 146 (249)
..++++..+|++|.+.... ..+-++.+. .++..+.+|.|....|-+-. | .-.-+++
T Consensus 160 v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~-gDr~~fy~C~f~G~QDTLy~-~---------------~gRqyf~ 222 (369)
T PLN02682 160 VNSPYFIAKNITFKNTAPVPPPGALGKQAVALRIS-ADTAAFYGCKFLGAQDTLYD-H---------------LGRHYFK 222 (369)
T ss_pred EECCCeEEEeeEEEcccccCCCCCCcccEEEEEec-CCcEEEEcceEeccccceEE-C---------------CCCEEEE
Confidence 4567899999999875421 134445555 48999999999988776653 1 0134678
Q ss_pred eeEEEcc
Q 042417 147 NCTFTGT 153 (249)
Q Consensus 147 n~~~~~~ 153 (249)
||.++++
T Consensus 223 ~C~IeG~ 229 (369)
T PLN02682 223 DCYIEGS 229 (369)
T ss_pred eeEEccc
Confidence 8888887
No 45
>PLN02176 putative pectinesterase
Probab=94.78 E-value=1 Score=40.87 Aligned_cols=119 Identities=12% Similarity=0.073 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHhhcCC-CCcEEEecCCeEE-EEEEE-ecCCCceec-----eeEe-cccC----eEEEEEceeeEEEEe
Q 042417 17 DSKAFETAWREACNWDG-IKSAVLVPPGKYL-SIRFN-FLNDSTITG-----IKSV-DSRY----FHINILGCYNLKLND 83 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~~g-~g~~v~iP~G~y~-~i~~~-~~~nv~i~g-----i~i~-ns~~----~~i~~~~s~nv~I~n 83 (249)
|-..||+||+ +..... ..-+|+|.+|+|. .+.+. ...++++.| ..|. +... .......++++..+|
T Consensus 50 df~TIq~AId-avP~~~~~~~~I~Ik~GvY~EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v~a~~F~a~n 128 (340)
T PLN02176 50 YFKTVQSAID-SIPLQNQNWIRILIQNGIYREKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTSYASNIIITG 128 (340)
T ss_pred CccCHHHHHh-hchhcCCceEEEEECCcEEEEEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEEECCCEEEEe
Confidence 5778999995 443321 0237889999998 22332 234555543 1221 1111 112233578899999
Q ss_pred eEEecCCCC--------CCCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 84 LKITAHADS--------PNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 84 ~~i~~~~~~--------~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
++|.+.... ..+-++.+. .+...+.+|.|....|-+-...| .-+++||.++++
T Consensus 129 lT~~Nt~~~~~~~~~~~~QAVAl~v~-gDr~~f~~C~f~G~QDTLy~~~g----------------Rqyf~~CyIeG~ 189 (340)
T PLN02176 129 ITFKNTYNIASNSSRPTKPAVAARML-GDKYAIIDSSFDGFQDTLFDGKG----------------RHYYKRCVISGG 189 (340)
T ss_pred eEEEeCCCccCCCCCCccceEEEEec-CccEEEEccEEecccceeEeCCc----------------CEEEEecEEEec
Confidence 999875421 133445555 48899999999988887654111 346788888877
No 46
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=94.66 E-value=0.13 Score=45.81 Aligned_cols=119 Identities=10% Similarity=0.170 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHhhcCC-CCcEEEecCCeEE-EEEEEe-cCCCceec-----eeEeccc---------CeEEEEEceeeE
Q 042417 17 DSKAFETAWREACNWDG-IKSAVLVPPGKYL-SIRFNF-LNDSTITG-----IKSVDSR---------YFHINILGCYNL 79 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~~g-~g~~v~iP~G~y~-~i~~~~-~~nv~i~g-----i~i~ns~---------~~~i~~~~s~nv 79 (249)
|=..||+||+. ..... ..-+|+|.+|+|. .+.+.. ..++++.| ..|.... .-.......+++
T Consensus 11 df~TIq~Aida-~p~~~~~~~~I~I~~G~Y~E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v~a~~f 89 (298)
T PF01095_consen 11 DFTTIQAAIDA-APDNNTSRYTIFIKPGTYREKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSVNADDF 89 (298)
T ss_dssp SBSSHHHHHHH-S-SSSSS-EEEEE-SEEEE--EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE-STT-
T ss_pred CccCHHHHHHh-chhcCCceEEEEEeCeeEccccEeccccceEEEEecCCCceEEEEeccccccccccccccccccccce
Confidence 55779999954 43321 0348999999998 333332 23444443 1222110 001223356799
Q ss_pred EEEeeEEecCCC--CCCCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 80 KLNDLKITAHAD--SPNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 80 ~I~n~~i~~~~~--~~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
.++|++|.+... ...+-++.+.+ +++.+.+|.|....|-+-... + ...++||.+++.
T Consensus 90 ~~~nit~~Nt~g~~~~qAvAl~~~~-d~~~f~~c~~~g~QDTL~~~~-------------~---r~y~~~c~IeG~ 148 (298)
T PF01095_consen 90 TAENITFENTAGPSGGQAVALRVSG-DRAAFYNCRFLGYQDTLYANG-------------G---RQYFKNCYIEGN 148 (298)
T ss_dssp EEEEEEEEEHCSGSG----SEEET--TSEEEEEEEEE-STT-EEE-S-------------S---EEEEES-EEEES
T ss_pred eeeeeEEecCCCCcccceeeeeecC-CcEEEEEeEEccccceeeecc-------------c---eeEEEeeEEEec
Confidence 999999987532 13455666654 889999999999888775411 1 457788888887
No 47
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=94.66 E-value=0.82 Score=43.75 Aligned_cols=119 Identities=15% Similarity=0.184 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHhhc--CCCCcEEEecCCeEE-EEEEE-ecCCCceec-----eeEec----ccCe-----EEEEEceee
Q 042417 17 DSKAFETAWREACNW--DGIKSAVLVPPGKYL-SIRFN-FLNDSTITG-----IKSVD----SRYF-----HINILGCYN 78 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~--~g~g~~v~iP~G~y~-~i~~~-~~~nv~i~g-----i~i~n----s~~~-----~i~~~~s~n 78 (249)
|-..||+||+.+... .. .-+|+|.+|+|. .+.+. ...++++.| ..|.. ...| .......++
T Consensus 236 ~f~TIq~AI~a~~~~~~~~-r~vI~Ik~GvY~E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaTv~v~~~~ 314 (529)
T PLN02170 236 THKTIGEALLSTSLESGGG-RTVIYLKAGTYHENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTATVAAMGDG 314 (529)
T ss_pred chhhHHHHHHhcccccCCc-eEEEEEeCCeeEEEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceEEEEEcCC
Confidence 578899999643221 22 358899999997 12221 223444332 22211 1112 133445678
Q ss_pred EEEEeeEEecCCCC--CCCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 79 LKLNDLKITAHADS--PNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 79 v~I~n~~i~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
+..+|++|.+.... ..+-++.+. +....+.+|.|....|-+-. |. ..-.++||.+.++
T Consensus 315 F~a~nitf~Ntag~~~~QAVALrv~-gDr~~fy~C~f~GyQDTLy~-~~---------------~Rqyy~~C~I~Gt 374 (529)
T PLN02170 315 FIARDITFVNSAGPNSEQAVALRVG-SDKSVVYRCSVEGYQDSLYT-HS---------------KRQFYRETDITGT 374 (529)
T ss_pred eEEEeeEEEecCCCCCCceEEEEec-CCcEEEEeeeEeccCCccee-CC---------------CCEEEEeeEEccc
Confidence 89999999876432 245556665 48899999999988776654 10 1246788888887
No 48
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=94.58 E-value=1.1 Score=41.68 Aligned_cols=74 Identities=14% Similarity=0.146 Sum_probs=46.8
Q ss_pred EceeeEEEEeeEEecCCCC------CCCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCC-CCCceEeEEEE
Q 042417 74 LGCYNLKLNDLKITAHADS------PNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGI-NDEEVVGLTVR 146 (249)
Q Consensus 74 ~~s~nv~I~n~~i~~~~~~------~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~-~~~~v~ni~v~ 146 (249)
..++++..+|++|.+.... ..+-++.+. ...+.+.+|.|....|-+-.+.. . .+++ .......-+++
T Consensus 203 v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~-GDra~fy~C~flG~QDTLy~~~~-~----~~~~~~~~~~gRqYf~ 276 (422)
T PRK10531 203 SQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTD-GDKVQIENVNILGRQDTFFVTNS-G----VQNRLETDRQPRTYVK 276 (422)
T ss_pred EECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEc-CCcEEEEeeEEecccceeeeccc-c----ccccccccccccEEEE
Confidence 4668899999999876421 234445555 48999999999988887765110 0 0000 00122356889
Q ss_pred eeEEEcc
Q 042417 147 NCTFTGT 153 (249)
Q Consensus 147 n~~~~~~ 153 (249)
||.+++.
T Consensus 277 ~CyIeG~ 283 (422)
T PRK10531 277 NSYIEGD 283 (422)
T ss_pred eCEEeec
Confidence 9999987
No 49
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=94.55 E-value=0.35 Score=42.81 Aligned_cols=101 Identities=16% Similarity=0.162 Sum_probs=72.5
Q ss_pred EEEEEecCCCceeceeEeccc-----CeEEEE-EceeeEEEEeeEEecCCCC---CCCcc-eEec-CcccEEEEeeEEec
Q 042417 47 SIRFNFLNDSTITGIKSVDSR-----YFHINI-LGCYNLKLNDLKITAHADS---PNTEG-IHIG-SSNGSEISHSVIAT 115 (249)
Q Consensus 47 ~i~~~~~~nv~i~gi~i~ns~-----~~~i~~-~~s~nv~I~n~~i~~~~~~---~n~DG-i~~~-~s~nv~I~n~~i~~ 115 (249)
.|.+....|+.|++|+|+..+ +..|.+ ..+.|+=|+++++...... .-.|| +|+. .+.+|+|..++|..
T Consensus 118 gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhd 197 (345)
T COG3866 118 GLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHD 197 (345)
T ss_pred eEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeec
Confidence 567777999999999999877 456788 7889999999999874321 13455 4554 46799999999987
Q ss_pred CCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 116 GDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 116 gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
.|-. +-+|+.-......+-.+|++.++.|.+.
T Consensus 198 h~Ks------sl~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 198 HDKS------SLLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred CCee------eeeccCCcccccCCceeEEEeccccccc
Confidence 6543 4445432111124567788888888887
No 50
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=94.51 E-value=0.86 Score=44.12 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHhhcC-----CCCcEEEecCCeEE-EEEEE-ecCCCceec-----eeEecc----cCeE-----EEEEc
Q 042417 17 DSKAFETAWREACNWD-----GIKSAVLVPPGKYL-SIRFN-FLNDSTITG-----IKSVDS----RYFH-----INILG 75 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~~-----g~g~~v~iP~G~y~-~i~~~-~~~nv~i~g-----i~i~ns----~~~~-----i~~~~ 75 (249)
|-..||+||+ +.... + .-+|+|.+|+|. -+.+. ...++++.| ..|... ..|. .....
T Consensus 261 ~f~TIq~Av~-a~p~~~~~~~~-~~vI~Ik~G~Y~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SaT~~v~ 338 (566)
T PLN02713 261 NFTTINDAVA-AAPNNTDGSNG-YFVIYVTAGVYEEYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAVV 338 (566)
T ss_pred CCCCHHHHHH-hhhcccCCCCc-eEEEEEcCcEEEEEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccceeEEEE
Confidence 4678999995 44332 2 247999999998 22221 223333332 122111 1121 23345
Q ss_pred eeeEEEEeeEEecCCCC--CCCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 76 CYNLKLNDLKITAHADS--PNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 76 s~nv~I~n~~i~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
.+++..+|++|.+.... ..+-++.+. +....+.+|.|....|-+-. |. + .-+++||.++++
T Consensus 339 ~~~F~a~nitf~Ntag~~~~QAVAlrv~-~D~~~fy~C~~~G~QDTLy~-~~------------~---Rqyy~~C~I~Gt 401 (566)
T PLN02713 339 GQNFVAVNITFRNTAGPAKHQAVALRSG-ADLSTFYSCSFEAYQDTLYT-HS------------L---RQFYRECDIYGT 401 (566)
T ss_pred CCCeEEEeeEEEeCCCCCCCceEEEEec-CCcEEEEeeeeccCCcceEE-CC------------C---CEEEEeeEEecc
Confidence 68999999999886432 234445554 48889999999988877654 11 0 247888888887
No 51
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=94.25 E-value=0.86 Score=43.87 Aligned_cols=119 Identities=13% Similarity=0.188 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHhhcCC-CCcEEEecCCeEE-EEEE-EecCCCceec-----eeEeccc----Ce-----EEEEEceeeE
Q 042417 17 DSKAFETAWREACNWDG-IKSAVLVPPGKYL-SIRF-NFLNDSTITG-----IKSVDSR----YF-----HINILGCYNL 79 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~~g-~g~~v~iP~G~y~-~i~~-~~~~nv~i~g-----i~i~ns~----~~-----~i~~~~s~nv 79 (249)
|-..||+||+ +..... ..-+|+|.+|+|. -+.+ ....++++.| ..|.... .| .......+++
T Consensus 241 ~f~TIq~Ai~-a~p~~~~~r~vI~Ik~GvY~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v~~~~F 319 (541)
T PLN02416 241 NFSTITDAIN-FAPNNSNDRIIIYVREGVYEENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATLAVSGEGF 319 (541)
T ss_pred CccCHHHHHH-hhhhcCCceEEEEEeCceeEEEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEEEEECCCe
Confidence 5678999995 443321 0347889999997 2222 1233444432 2222111 12 1233456889
Q ss_pred EEEeeEEecCCCC--CCCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 80 KLNDLKITAHADS--PNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 80 ~I~n~~i~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
..+|++|.+.... ..+-++.+. +..+.+.+|.|....|-+.. |+ ..-.++||.++++
T Consensus 320 ~a~nitf~Ntag~~~~QAVAl~v~-~D~~~fy~c~~~G~QDTLy~-~~---------------~Rqyy~~C~I~Gt 378 (541)
T PLN02416 320 LARDITIENTAGPEKHQAVALRVN-ADLVALYRCTINGYQDTLYV-HS---------------FRQFYRECDIYGT 378 (541)
T ss_pred EEEeeEEEECCCCCCCceEEEEEc-CccEEEEcceEecccchhcc-CC---------------CceEEEeeEEeec
Confidence 9999999876432 244555555 48899999999987776643 11 1347888888887
No 52
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=94.19 E-value=0.97 Score=43.49 Aligned_cols=118 Identities=14% Similarity=0.198 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHhhc--CCCCcEEEecCCeEE-EEEEE-ecCCCceec-----eeEecc----cCe-----EEEEEceee
Q 042417 17 DSKAFETAWREACNW--DGIKSAVLVPPGKYL-SIRFN-FLNDSTITG-----IKSVDS----RYF-----HINILGCYN 78 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~--~g~g~~v~iP~G~y~-~i~~~-~~~nv~i~g-----i~i~ns----~~~-----~i~~~~s~n 78 (249)
|-..||+||+ +... .+ .-+|+|.+|+|. .+.+. ...++++.| ..|... ..| ......+++
T Consensus 243 ~f~TIq~Av~-a~p~~~~~-r~vI~Vk~GvY~E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v~~~~ 320 (537)
T PLN02506 243 HYRTITEAIN-EAPNHSNR-RYIIYVKKGVYKENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAVSGRG 320 (537)
T ss_pred CccCHHHHHH-hchhcCCC-cEEEEEeCCeeeEEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEEEcCC
Confidence 4678999995 4432 22 358999999997 22221 123333322 111111 111 123456778
Q ss_pred EEEEeeEEecCCCC--CCCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 79 LKLNDLKITAHADS--PNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 79 v~I~n~~i~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
+..+|++|.+.... ..+-++.+. +.++.+.+|.|....|-+-. |. ..-+++||.+.++
T Consensus 321 F~a~nit~~Ntag~~~~QAVAl~v~-~D~~~fy~C~~~G~QDTLy~-~~---------------~rqyy~~C~I~Gt 380 (537)
T PLN02506 321 FIARDITFRNTAGPQNHQAVALRVD-SDQSAFYRCSMEGYQDTLYA-HS---------------LRQFYRECEIYGT 380 (537)
T ss_pred eEEEeeEEEeCCCCCCCceEEEEec-CCcEEEEcceeeccccccee-cC---------------CceEEEeeEEecc
Confidence 99999999876432 245555555 48999999999988776654 11 1236788888887
No 53
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=94.17 E-value=1.6 Score=41.81 Aligned_cols=118 Identities=15% Similarity=0.145 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHhhcC--CCCcEEEecCCeEE-EEEEE-ecCCCceec-----eeEeccc----Ce-----EEEEEceee
Q 042417 17 DSKAFETAWREACNWD--GIKSAVLVPPGKYL-SIRFN-FLNDSTITG-----IKSVDSR----YF-----HINILGCYN 78 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~~--g~g~~v~iP~G~y~-~i~~~-~~~nv~i~g-----i~i~ns~----~~-----~i~~~~s~n 78 (249)
|-..||+||+ +.... . .-+|+|.+|+|. .+.+. ...++++.| ..|.... .| .......++
T Consensus 217 ~f~TIq~Ai~-a~P~~~~~-r~vI~Ik~GvY~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v~~~~ 294 (520)
T PLN02201 217 NFTTIMDAVL-AAPDYSTK-RYVIYIKKGVYLENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFAVSGRG 294 (520)
T ss_pred CccCHHHHHH-hchhcCCC-cEEEEEeCceeEEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEEEEECCC
Confidence 5778999995 44332 2 458999999998 22221 223444432 2222111 11 123345678
Q ss_pred EEEEeeEEecCCCC--CCCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 79 LKLNDLKITAHADS--PNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 79 v~I~n~~i~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
+..+|++|.+.... ..+-++.+. +....+.+|.|....|-+-. |. + .-+++||.++++
T Consensus 295 F~a~nitf~Ntag~~~~QAVAlrv~-~D~~~fy~C~f~G~QDTLy~-~~------------~---Rqyy~~C~I~Gt 354 (520)
T PLN02201 295 FIARDITFQNTAGPEKHQAVALRSD-SDLSVFYRCAMRGYQDTLYT-HT------------M---RQFYRECRITGT 354 (520)
T ss_pred eEEEeeEEEECCCCCCCceEEEEEc-CCcEEEEeeeeeccCCeeEe-CC------------C---CEEEEeeEEeec
Confidence 89999999876432 244455555 48899999999988887654 11 0 236788888887
No 54
>PLN02916 pectinesterase family protein
Probab=94.17 E-value=1.2 Score=42.52 Aligned_cols=118 Identities=14% Similarity=0.212 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHhhc-----CCCCcEEEecCCeEE-EEEEE-ecCCCceec-----eeEeccc----C---eE--EEEEc
Q 042417 17 DSKAFETAWREACNW-----DGIKSAVLVPPGKYL-SIRFN-FLNDSTITG-----IKSVDSR----Y---FH--INILG 75 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~-----~g~g~~v~iP~G~y~-~i~~~-~~~nv~i~g-----i~i~ns~----~---~~--i~~~~ 75 (249)
|-..||+||+ +... .. .-+|+|.+|+|. .+.+. ...++++.| ..|.... . +. .....
T Consensus 198 ~f~TIq~AI~-a~P~~~~~~~~-r~vI~Ik~GvY~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v~ 275 (502)
T PLN02916 198 THRTINQALA-ALSRMGKSRTN-RVIIYVKAGVYNEKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGVS 275 (502)
T ss_pred CccCHHHHHH-hcccccCCCCc-eEEEEEeCceeeEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEEE
Confidence 5678999995 4432 12 347999999998 22221 223444433 2221110 1 11 22345
Q ss_pred eeeEEEEeeEEecCCCC--CCCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 76 CYNLKLNDLKITAHADS--PNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 76 s~nv~I~n~~i~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
.+++..+|++|.+.... ..+-++.+. +....+.+|.|....|-+-. |. + .-+++||.++++
T Consensus 276 ~~~F~A~nitf~Ntag~~~~QAVALrv~-~D~a~fy~C~f~G~QDTLy~-~~------------~---Rqyy~~C~I~Gt 338 (502)
T PLN02916 276 GDGFWARDITFENTAGPHKHQAVALRVS-SDLSVFYRCSFKGYQDTLFV-HS------------L---RQFYRDCHIYGT 338 (502)
T ss_pred CCCEEEEeeEEEeCCCCCCCceEEEEEc-CCcEEEEeeeEeccCceeEe-CC------------C---CEEEEecEEecc
Confidence 67888999999876433 234455555 48899999999998887654 11 0 246888888888
No 55
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=94.09 E-value=1.1 Score=43.15 Aligned_cols=119 Identities=15% Similarity=0.154 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHhhcCCC-CcEEEecCCeEE-EEEEE-ecCCCceec-----eeEeccc----C---e--EEEEEceeeE
Q 042417 17 DSKAFETAWREACNWDGI-KSAVLVPPGKYL-SIRFN-FLNDSTITG-----IKSVDSR----Y---F--HINILGCYNL 79 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~~g~-g~~v~iP~G~y~-~i~~~-~~~nv~i~g-----i~i~ns~----~---~--~i~~~~s~nv 79 (249)
|-..||+||+ +...... .-+|+|.+|+|. .+.+. ...++++.| ..|.... . + .......+++
T Consensus 247 ~f~TIq~Ai~-a~P~~~~~r~vI~Ik~G~Y~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v~~~~F 325 (548)
T PLN02301 247 KYKTVKEAVA-SAPDNSKTRYVIYVKKGTYKENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATVAAVGDGF 325 (548)
T ss_pred CcccHHHHHH-hhhhcCCceEEEEEeCceeeEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEEEEECCce
Confidence 5678999995 4433220 247899999997 22221 123443322 1121111 1 1 1233456789
Q ss_pred EEEeeEEecCCCC--CCCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 80 KLNDLKITAHADS--PNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 80 ~I~n~~i~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
..+|++|.+.... ..+-++.+. +....+.+|.|....|-+-. |. - .-.++||.+.++
T Consensus 326 ~a~nitf~Ntag~~~~QAVAlrv~-~D~~~fy~C~~~G~QDTLy~-~~--------------~-Rqyy~~C~I~Gt 384 (548)
T PLN02301 326 IAQDIWFQNTAGPEKHQAVALRVS-ADQAVINRCRIDAYQDTLYA-HS--------------L-RQFYRDSYITGT 384 (548)
T ss_pred EEEeeEEEECCCCCCCceEEEEec-CCcEEEEeeeeeecccccee-cC--------------C-cEEEEeeEEEec
Confidence 9999999875432 244455555 48999999999988776654 11 0 237888888887
No 56
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=93.87 E-value=1.4 Score=42.88 Aligned_cols=118 Identities=15% Similarity=0.160 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHhhcC--CCCcEEEecCCeEE-EEEEE-ecCCCceec-----eeEeccc----Ce-----EEEEEceee
Q 042417 17 DSKAFETAWREACNWD--GIKSAVLVPPGKYL-SIRFN-FLNDSTITG-----IKSVDSR----YF-----HINILGCYN 78 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~~--g~g~~v~iP~G~y~-~i~~~-~~~nv~i~g-----i~i~ns~----~~-----~i~~~~s~n 78 (249)
|-..||+||+ +.... . .-+|+|.+|+|. .+.+. ...++++.| ..|.... .| .......++
T Consensus 296 ~f~TIq~Ai~-a~P~~~~~-r~vI~Ik~GvY~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v~~~~ 373 (596)
T PLN02745 296 NFTTISDALA-AMPAKYEG-RYVIYVKQGIYDETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATFVALGEG 373 (596)
T ss_pred CcccHHHHHH-hccccCCc-eEEEEEeCCeeEEEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEEEEEcCC
Confidence 5678999995 44332 2 347889999997 22221 223444432 1221111 11 122346678
Q ss_pred EEEEeeEEecCCCC--CCCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 79 LKLNDLKITAHADS--PNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 79 v~I~n~~i~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
+..+|++|.+.... ..+-++.+. +....+.+|.|....|-+-. | -..-+++||.+.++
T Consensus 374 F~a~nitf~Ntag~~~~QAVAl~v~-~Dr~~f~~c~~~G~QDTLy~-~---------------~~Rqyy~~C~I~Gt 433 (596)
T PLN02745 374 FMAKSMGFRNTAGPEKHQAVAIRVQ-SDRSIFLNCRFEGYQDTLYA-Q---------------THRQFYRSCVITGT 433 (596)
T ss_pred EEEEeeEEEECCCCCCCceEEEEEc-CCcEEEEeeEEeeccccccc-C---------------CCcEEEEeeEEEee
Confidence 99999999875432 244556655 48999999999987776643 1 01347888888887
No 57
>PLN02634 probable pectinesterase
Probab=93.82 E-value=2.1 Score=39.07 Aligned_cols=119 Identities=11% Similarity=0.140 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHhhcC-CCCcEEEecCCeEE-EEEEE-ecCCCceec----eeEe---ccc--------Ce-----EEEE
Q 042417 17 DSKAFETAWREACNWD-GIKSAVLVPPGKYL-SIRFN-FLNDSTITG----IKSV---DSR--------YF-----HINI 73 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~~-g~g~~v~iP~G~y~-~i~~~-~~~nv~i~g----i~i~---ns~--------~~-----~i~~ 73 (249)
|=..||+||+ ++... ...-+|+|-+|+|. .+.+. ...++++.| -+++ +.. .+ ....
T Consensus 67 df~TIQaAId-a~P~~~~~r~vI~Ik~GvY~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~ 145 (359)
T PLN02634 67 DFRSVQDAVD-SVPKNNTMSVTIKINAGFYREKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVT 145 (359)
T ss_pred CccCHHHHHh-hCcccCCccEEEEEeCceEEEEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEE
Confidence 5778999995 44332 10347889999998 22332 234454443 1221 100 01 1223
Q ss_pred EceeeEEEEeeEEecCCCC-------CCCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEE
Q 042417 74 LGCYNLKLNDLKITAHADS-------PNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVR 146 (249)
Q Consensus 74 ~~s~nv~I~n~~i~~~~~~-------~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~ 146 (249)
..++++..+|++|.+.... ..+-++.+. ++...+.+|.|....|.+....| .-+++
T Consensus 146 V~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~-gDra~f~~C~f~G~QDTL~~~~g----------------R~yf~ 208 (359)
T PLN02634 146 VYANYFTARNISFKNTAPAPMPGMQGWQAVAFRIS-GDKAFFFGCGFYGAQDTLCDDAG----------------RHYFK 208 (359)
T ss_pred EECCCeEEEeCeEEeCCccCCCCCCCCceEEEEec-CCcEEEEEeEEecccceeeeCCC----------------CEEEE
Confidence 3567888899988875321 234445555 47899999999988887654111 34677
Q ss_pred eeEEEcc
Q 042417 147 NCTFTGT 153 (249)
Q Consensus 147 n~~~~~~ 153 (249)
||.++++
T Consensus 209 ~CyIeG~ 215 (359)
T PLN02634 209 ECYIEGS 215 (359)
T ss_pred eeEEccc
Confidence 7777776
No 58
>PLN02671 pectinesterase
Probab=93.70 E-value=1.9 Score=39.42 Aligned_cols=119 Identities=11% Similarity=0.096 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHhhc-CCCCcEEEecCCeEE-EEEEE-ecCCCceec-------eeEe--ccc--------Ce-----EE
Q 042417 17 DSKAFETAWREACNW-DGIKSAVLVPPGKYL-SIRFN-FLNDSTITG-------IKSV--DSR--------YF-----HI 71 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~-~g~g~~v~iP~G~y~-~i~~~-~~~nv~i~g-------i~i~--ns~--------~~-----~i 71 (249)
|-..||+||+ +... +...-+|+|-+|+|. .+.+. ...++++.| ..|. +.. .| ..
T Consensus 70 df~TIQ~AId-avP~~~~~~~~I~Ik~GvY~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaT 148 (359)
T PLN02671 70 DSLTVQGAVD-MVPDYNSQRVKIYILPGIYREKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTAS 148 (359)
T ss_pred CccCHHHHHH-hchhcCCccEEEEEeCceEEEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEE
Confidence 5778999995 4433 210348899999998 22221 223333322 1121 000 01 12
Q ss_pred EEEceeeEEEEeeEEecCCC------CCCCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEE
Q 042417 72 NILGCYNLKLNDLKITAHAD------SPNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTV 145 (249)
Q Consensus 72 ~~~~s~nv~I~n~~i~~~~~------~~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v 145 (249)
....++++..+|++|.+... ...+-++.+.+ +++.+.+|.|....|.+-...| .-++
T Consensus 149 v~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~g-Dra~f~~c~f~G~QDTLy~~~g----------------R~yf 211 (359)
T PLN02671 149 VTIESDYFCATGITFENTVVAEPGGQGMQAVALRISG-DKAFFYKVRVLGAQDTLLDETG----------------SHYF 211 (359)
T ss_pred EEEECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcC-ccEEEEcceEeccccccEeCCC----------------cEEE
Confidence 23456778888888877521 12345566654 8999999999988776643111 2367
Q ss_pred EeeEEEcc
Q 042417 146 RNCTFTGT 153 (249)
Q Consensus 146 ~n~~~~~~ 153 (249)
+||.++++
T Consensus 212 ~~CyIeG~ 219 (359)
T PLN02671 212 YQCYIQGS 219 (359)
T ss_pred EecEEEEe
Confidence 77777776
No 59
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=93.69 E-value=2.1 Score=40.76 Aligned_cols=118 Identities=16% Similarity=0.097 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHhhcC--CCCcEEEecCCeEE-EEEEE-ecCCCceec-----eeEeccc----Ce-----EEEEEceee
Q 042417 17 DSKAFETAWREACNWD--GIKSAVLVPPGKYL-SIRFN-FLNDSTITG-----IKSVDSR----YF-----HINILGCYN 78 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~~--g~g~~v~iP~G~y~-~i~~~-~~~nv~i~g-----i~i~ns~----~~-----~i~~~~s~n 78 (249)
|-..||+||+ +.... . .-+|+|.+|+|. -+.+. ...++++.| ..|.... .+ .......++
T Consensus 208 ~f~TIq~AI~-a~P~~~~~-r~vI~Ik~GvY~E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv~v~g~g 285 (509)
T PLN02488 208 KYNTVNAAIA-AAPEHSRK-RFVIYIKTGVYDEIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATVASNGDG 285 (509)
T ss_pred CccCHHHHHH-hchhcCCC-cEEEEEeCCeeEEEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEEEEEcCC
Confidence 5677999995 44332 2 348999999997 22222 233444433 1121110 11 122235678
Q ss_pred EEEEeeEEecCCCC--CCCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 79 LKLNDLKITAHADS--PNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 79 v~I~n~~i~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
+..+|++|.+.... ..+-++.+. +....+.+|.|....|-+-. |. ..-.++||.+.++
T Consensus 286 F~A~nitf~Ntag~~~~QAVALrv~-~Dra~Fy~C~f~GyQDTLy~-~~---------------~RqyyrdC~I~Gt 345 (509)
T PLN02488 286 FIGIDMCFRNTAGPAKGPAVALRVS-GDMSVIYRCRIEGYQDALYP-HR---------------DRQFYRECFITGT 345 (509)
T ss_pred eEEEeeEEEECCCCCCCceEEEEec-CCcEEEEcceeeccCcceee-CC---------------CCEEEEeeEEeec
Confidence 88899999875432 234445554 48899999999988776654 11 1346788888887
No 60
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=93.68 E-value=1.2 Score=40.02 Aligned_cols=70 Identities=21% Similarity=0.296 Sum_probs=52.4
Q ss_pred cCCCceeceeEecccC-----------------------------eEEEEEceeeEEEEeeEEecCCCC---CCCcceEe
Q 042417 53 LNDSTITGIKSVDSRY-----------------------------FHINILGCYNLKLNDLKITAHADS---PNTEGIHI 100 (249)
Q Consensus 53 ~~nv~i~gi~i~ns~~-----------------------------~~i~~~~s~nv~I~n~~i~~~~~~---~n~DGi~~ 100 (249)
.+++.++|++++++.. +.+.+..+.++.|++.+|.+..+- .-..||.+
T Consensus 76 aP~~~v~Gl~vr~sg~~lp~m~agI~v~~~at~A~Vr~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~v 155 (408)
T COG3420 76 APDVIVEGLTVRGSGRSLPAMDAGIFVGRTATGAVVRHNDLIGNSFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYV 155 (408)
T ss_pred CCCceeeeEEEecCCCCcccccceEEeccCcccceEEcccccccceEEEEeccCceEEEeeEEeeccccchhhccCceEE
Confidence 6788888888886542 346677777888888888775443 25678888
Q ss_pred cCcccEEEEeeEEecCCCeeEe
Q 042417 101 GSSNGSEISHSVIATGDDCVSL 122 (249)
Q Consensus 101 ~~s~nv~I~n~~i~~gDD~i~i 122 (249)
..++.++|....+.-+.|||-.
T Consensus 156 yNa~~a~V~~ndisy~rDgIy~ 177 (408)
T COG3420 156 YNAPGALVVGNDISYGRDGIYS 177 (408)
T ss_pred EcCCCcEEEcCccccccceEEE
Confidence 8888888888888888888876
No 61
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=93.67 E-value=2 Score=41.53 Aligned_cols=118 Identities=17% Similarity=0.125 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHhhc---CCCCcEEEecCCeEE-EEEEE-ecCCCceec-----eeEec--c---cCe-----EEEEEce
Q 042417 17 DSKAFETAWREACNW---DGIKSAVLVPPGKYL-SIRFN-FLNDSTITG-----IKSVD--S---RYF-----HINILGC 76 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~---~g~g~~v~iP~G~y~-~i~~~-~~~nv~i~g-----i~i~n--s---~~~-----~i~~~~s 76 (249)
|-..||+||+.+ .. .+ .-+|+|.+|+|. .+.+. ...++++.| ..|.. + +.| .......
T Consensus 252 ~f~TIq~Av~a~-p~~~~~~-r~vI~vk~GvY~E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~saT~~v~~ 329 (553)
T PLN02708 252 CYKTVQEAVNAA-PDNNGDR-KFVIRIKEGVYEETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVGVLG 329 (553)
T ss_pred CccCHHHHHHhh-hhccCCc-cEEEEEeCceEEeeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceEEEEEEc
Confidence 467899999544 33 22 348999999997 22221 233444432 22211 1 111 1233466
Q ss_pred eeEEEEeeEEecCCCC--CCCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 77 YNLKLNDLKITAHADS--PNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 77 ~nv~I~n~~i~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
+++..+|++|.+.... ..+-++.+. +..+.+.+|.|....|-+-. |+ + .-.++||.+.++
T Consensus 330 ~~f~a~~it~~Ntag~~~~QAVAlrv~-~D~~~f~~c~~~G~QDTLy~-~~------------~---rq~y~~C~I~Gt 391 (553)
T PLN02708 330 DGFMARDLTIQNTAGPDAHQAVAFRSD-SDLSVIENCEFLGNQDTLYA-HS------------L---RQFYKSCRIQGN 391 (553)
T ss_pred CCeEEEeeEEEcCCCCCCCceEEEEec-CCcEEEEeeeeeecccccee-CC------------C---ceEEEeeEEeec
Confidence 7999999999886532 345555555 48999999999988776654 11 0 236788888887
No 62
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=93.49 E-value=1.4 Score=43.45 Aligned_cols=103 Identities=13% Similarity=0.075 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHhhcC--CCCcEEEecCCeEE-EEEEE-ecCCCceec-----eeEeccc----Ce-----EEEEEceee
Q 042417 17 DSKAFETAWREACNWD--GIKSAVLVPPGKYL-SIRFN-FLNDSTITG-----IKSVDSR----YF-----HINILGCYN 78 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~~--g~g~~v~iP~G~y~-~i~~~-~~~nv~i~g-----i~i~ns~----~~-----~i~~~~s~n 78 (249)
|-..||+||+ +.... . .-+|+|-+|+|. -+.+. ...++.+.| ..|.... .| .......++
T Consensus 261 ~f~TIq~Av~-a~P~~~~~-r~vI~Ik~GvY~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~~v~g~~ 338 (670)
T PLN02217 261 QYKTINEALN-FVPKKKNT-TFVVHIKAGIYKEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVAIVGDH 338 (670)
T ss_pred CccCHHHHHH-hccccCCc-eEEEEEeCCceEEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEEEEECCC
Confidence 5678999995 44332 2 347889999998 22221 112333222 1111100 11 122235678
Q ss_pred EEEEeeEEecCCCC--CCCcceEecCcccEEEEeeEEecCCCeeEe
Q 042417 79 LKLNDLKITAHADS--PNTEGIHIGSSNGSEISHSVIATGDDCVSL 122 (249)
Q Consensus 79 v~I~n~~i~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~i~i 122 (249)
+..+|++|.+.... ..+-++.+. +....+.+|.|....|-+..
T Consensus 339 F~a~nitf~Ntag~~~~QAVAlrv~-~Dra~fy~C~f~G~QDTLy~ 383 (670)
T PLN02217 339 FIAKNIGFENTAGAIKHQAVAIRVL-SDESIFYNCKFDGYQDTLYA 383 (670)
T ss_pred eEEEeeEEEeCCCCCCCceEEEEec-CCcEEEEcceeeeccchhcc
Confidence 88888888875432 234444444 47888888888877665543
No 63
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=93.49 E-value=1.7 Score=41.66 Aligned_cols=119 Identities=13% Similarity=0.144 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHhhcCC-CCcEEEecCCeEE-EEEEE-ecCCCceec-----eeEec----ccCeE-----EEEEceeeE
Q 042417 17 DSKAFETAWREACNWDG-IKSAVLVPPGKYL-SIRFN-FLNDSTITG-----IKSVD----SRYFH-----INILGCYNL 79 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~~g-~g~~v~iP~G~y~-~i~~~-~~~nv~i~g-----i~i~n----s~~~~-----i~~~~s~nv 79 (249)
|-..||+||+ +..... ..-+|+|-+|+|. -+.+. ...++++.| ..|.. ...|. ......+++
T Consensus 229 ~f~TIq~Ai~-a~P~~~~~r~vI~Ik~GvY~E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v~a~~F 307 (530)
T PLN02933 229 NFTTINEAVS-AAPNSSETRFIIYIKGGEYFENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATVGVKGKGF 307 (530)
T ss_pred CccCHHHHHH-hchhcCCCcEEEEEcCceEEEEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceEEEEECCCE
Confidence 4678999995 443321 0348899999997 22221 122333322 11211 11121 223456788
Q ss_pred EEEeeEEecCCCC--CCCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 80 KLNDLKITAHADS--PNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 80 ~I~n~~i~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
..+|++|.+.... ..+-++.+. +....+.+|.|....|-+-. |. + .-+++||.++++
T Consensus 308 ~a~nitf~Ntag~~~~QAVAlrv~-~Dra~fy~C~f~G~QDTLy~-~~------------~---Rqyy~~C~IeGt 366 (530)
T PLN02933 308 IAKDISFVNYAGPAKHQAVALRSG-SDHSAFYRCEFDGYQDTLYV-HS------------A---KQFYRECDIYGT 366 (530)
T ss_pred EEEeeEEEECCCCCCCceEEEEEc-CCcEEEEEeEEEeccccccc-CC------------C---ceEEEeeEEecc
Confidence 9999999876432 234445544 48899999999988776653 10 1 237888888888
No 64
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=93.43 E-value=1.5 Score=42.48 Aligned_cols=118 Identities=14% Similarity=0.173 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHhhc--CCCCcEEEecCCeEE-EEEEE-ecCCCceec-----eeEe-------cccCe--EEEEEceee
Q 042417 17 DSKAFETAWREACNW--DGIKSAVLVPPGKYL-SIRFN-FLNDSTITG-----IKSV-------DSRYF--HINILGCYN 78 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~--~g~g~~v~iP~G~y~-~i~~~-~~~nv~i~g-----i~i~-------ns~~~--~i~~~~s~n 78 (249)
+-..||+|++ +... .+ .-+|+|.+|+|. .+.+. ...|+++.| ..|. ..+-| .......++
T Consensus 269 ~f~tI~~Av~-a~p~~~~~-~~vI~ik~GvY~E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v~~~~ 346 (565)
T PLN02468 269 KYKTISEALK-DVPEKSEK-RTIIYVKKGVYFENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAVFGKG 346 (565)
T ss_pred CccCHHHHHH-hchhcCCC-cEEEEEeCCceEEEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeEECCC
Confidence 4578999995 4432 22 458999999997 11121 122333321 1111 11111 123345678
Q ss_pred EEEEeeEEecCCCC--CCCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 79 LKLNDLKITAHADS--PNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 79 v~I~n~~i~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
+..+|++|.+.... +.+-++.+. +....+.+|.|....|-+-. |. ..-.++||.+.++
T Consensus 347 f~a~~itf~Ntag~~~~QAVAl~v~-~D~~~fy~c~~~G~QDTLy~-~~---------------~rq~y~~C~I~Gt 406 (565)
T PLN02468 347 FMARDMGFRNTAGPIKHQAVALMSS-ADLSVFYRCTMDAFQDTLYA-HA---------------QRQFYRECNIYGT 406 (565)
T ss_pred eEEEEEEEEeCCCCCCCceEEEEEc-CCcEEEEEeEEEeccchhcc-CC---------------CceEEEeeEEecc
Confidence 99999999876432 244455554 48899999999987776643 11 1246888888888
No 65
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=93.39 E-value=1.6 Score=42.36 Aligned_cols=118 Identities=15% Similarity=0.207 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHhhcC--CCCcEEEecCCeEE-EEEEE-ecCCCceec-----eeEecc-----cCeE-----EEEEcee
Q 042417 17 DSKAFETAWREACNWD--GIKSAVLVPPGKYL-SIRFN-FLNDSTITG-----IKSVDS-----RYFH-----INILGCY 77 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~~--g~g~~v~iP~G~y~-~i~~~-~~~nv~i~g-----i~i~ns-----~~~~-----i~~~~s~ 77 (249)
|-..||+||+ +.... . .-+|+|.+|+|. -+.+. ...++++.| ..|..+ ..|. ......+
T Consensus 270 ~f~TIq~Av~-a~p~~~~~-r~vI~Ik~GvY~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT~~v~~~ 347 (572)
T PLN02990 270 QYKTINEALN-AVPKANQK-PFVIYIKQGVYNEKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTATVAINGD 347 (572)
T ss_pred CCcCHHHHHh-hCcccCCc-eEEEEEeCceeEEEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeEEEEEcC
Confidence 5678999995 44332 2 347899999998 22221 223444432 222211 0011 2234567
Q ss_pred eEEEEeeEEecCCCC--CCCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 78 NLKLNDLKITAHADS--PNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 78 nv~I~n~~i~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
++..+|++|.+.... ..+-++.+. +....+.+|.|....|-+-. |. ..-+++||.+.++
T Consensus 348 ~F~a~nitf~Ntag~~~~QAVAlrv~-~D~~~f~~c~~~G~QDTLy~-~~---------------~Rqyy~~C~I~Gt 408 (572)
T PLN02990 348 HFTAKNIGFENTAGPEGHQAVALRVS-ADYAVFYNCQIDGYQDTLYV-HS---------------HRQFFRDCTVSGT 408 (572)
T ss_pred CEEEEeeEEEeCCCCCCCceEEEEEc-CCcEEEEeeeEecccchhcc-CC---------------CcEEEEeeEEecc
Confidence 889999999876432 234445555 48899999999987776654 11 1246788888888
No 66
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=93.12 E-value=1.8 Score=42.18 Aligned_cols=119 Identities=16% Similarity=0.158 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHhhcCC-CCcEEEecCCeEE-EEEEE-ecCCCceec-----eeEecc-------cCe--EEEEEceeeE
Q 042417 17 DSKAFETAWREACNWDG-IKSAVLVPPGKYL-SIRFN-FLNDSTITG-----IKSVDS-------RYF--HINILGCYNL 79 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~~g-~g~~v~iP~G~y~-~i~~~-~~~nv~i~g-----i~i~ns-------~~~--~i~~~~s~nv 79 (249)
|-..||+||+ +..... ..-+|+|.+|+|. -+.+. ...|+.+.| ..|..+ .-+ .......+++
T Consensus 286 ~f~TI~~Av~-a~p~~~~~r~vI~ik~GvY~E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~v~~~~F 364 (587)
T PLN02313 286 DFTTVAAAVA-AAPEKSNKRFVIHIKAGVYRENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVAAVGERF 364 (587)
T ss_pred CCccHHHHHH-hccccCCceEEEEEeCceeEEEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEEEECCCe
Confidence 5678999995 443321 0348899999997 11111 122333221 111110 111 1223456788
Q ss_pred EEEeeEEecCCCC--CCCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 80 KLNDLKITAHADS--PNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 80 ~I~n~~i~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
..+|++|.+.... ..+-++.+. +....+.+|.|....|-+-. |. ..-.++||.+.++
T Consensus 365 ~a~~itf~Ntag~~~~QAvAlrv~-~D~~~fy~C~~~g~QDTLy~-~~---------------~rq~y~~c~I~Gt 423 (587)
T PLN02313 365 LARDITFQNTAGPSKHQAVALRVG-SDFSAFYQCDMFAYQDTLYV-HS---------------NRQFFVKCHITGT 423 (587)
T ss_pred EEEeeEEEeCCCCCCCceEEEEec-CCcEEEEeeeEecccchhcc-CC---------------CcEEEEeeEEeec
Confidence 9999999876432 244555555 48899999999987776653 11 0236788888887
No 67
>PLN02197 pectinesterase
Probab=93.10 E-value=2.4 Score=41.26 Aligned_cols=119 Identities=14% Similarity=0.101 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHhhcCCC-CcEEEecCCeEE-EEEEE-ecCCCceec-----eeEe--cc----cCe-----EEEEEcee
Q 042417 17 DSKAFETAWREACNWDGI-KSAVLVPPGKYL-SIRFN-FLNDSTITG-----IKSV--DS----RYF-----HINILGCY 77 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~~g~-g~~v~iP~G~y~-~i~~~-~~~nv~i~g-----i~i~--ns----~~~-----~i~~~~s~ 77 (249)
|-..||+||+ +...... .-+|+|.+|+|. -+.+. ...++++.| ..|. ++ +.+ .......+
T Consensus 286 ~f~TIq~Ai~-a~P~~~~~r~vI~Ik~GvY~E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~v~~~ 364 (588)
T PLN02197 286 QFKTISQAVM-ACPDKNPGRCIIHIKAGIYNEQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQVESE 364 (588)
T ss_pred CcCCHHHHHH-hccccCCceEEEEEeCceEEEEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccceeEEEEECC
Confidence 5678999995 4433210 247889999998 12221 123333332 1111 11 111 12334678
Q ss_pred eEEEEeeEEecCCCC--CCCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 78 NLKLNDLKITAHADS--PNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 78 nv~I~n~~i~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
++..+|++|.+.... ..+-++.+. +....+.+|.|....|-+-. |. + .-+++||.+.++
T Consensus 365 ~F~a~nitf~Ntag~~~~QAVAlrv~-~D~~~fy~C~f~GyQDTLy~-~~------------~---Rqyy~~C~I~Gt 425 (588)
T PLN02197 365 GFMAKWIGFKNTAGPMGHQAVAIRVN-GDRAVIFNCRFDGYQDTLYV-NN------------G---RQFYRNIVVSGT 425 (588)
T ss_pred cEEEEEeEEEeCCCCCCCceEEEEec-CCcEEEEEeEEEecCcceEe-cC------------C---CEEEEeeEEEec
Confidence 899999999885432 345555555 48999999999998887654 10 0 236888888887
No 68
>PLN02314 pectinesterase
Probab=93.05 E-value=2.1 Score=41.77 Aligned_cols=118 Identities=17% Similarity=0.178 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHhhcC--CCCcEEEecCCeEE-EEEEE-ecCCCceec-----eeEec-------ccC--eEEEEEceee
Q 042417 17 DSKAFETAWREACNWD--GIKSAVLVPPGKYL-SIRFN-FLNDSTITG-----IKSVD-------SRY--FHINILGCYN 78 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~~--g~g~~v~iP~G~y~-~i~~~-~~~nv~i~g-----i~i~n-------s~~--~~i~~~~s~n 78 (249)
|-..||+|++ +.... . .-+|+|.+|+|. .+.+. ...|+++.| ..|.. .+- -.......++
T Consensus 289 ~f~TI~~Av~-a~p~~~~~-r~vI~ik~G~Y~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~v~~~~ 366 (586)
T PLN02314 289 DVKTINEAVA-SIPKKSKS-RFVIYVKEGTYVENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFAAAGKG 366 (586)
T ss_pred CccCHHHHHh-hccccCCc-eEEEEEcCceEEEEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEEEEcCC
Confidence 5678999995 44332 2 347899999997 22221 223343332 11111 011 1123346678
Q ss_pred EEEEeeEEecCCCC--CCCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 79 LKLNDLKITAHADS--PNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 79 v~I~n~~i~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
+..+|++|.+.... ..+-++.+. +....+.+|.|....|-+-. |+ + .-+++||.+.++
T Consensus 367 F~a~~itf~Ntag~~~~QAvAlrv~-~D~~~f~~c~~~G~QDTLy~-~~------------~---rq~y~~C~I~Gt 426 (586)
T PLN02314 367 FIAKDMGFINTAGAAKHQAVAFRSG-SDMSVFYQCSFDAFQDTLYA-HS------------N---RQFYRDCDITGT 426 (586)
T ss_pred eEEEeeEEEECCCCCCCceEEEEec-CCcEEEEeeEEEeccchhee-CC------------C---CEEEEeeEEEec
Confidence 99999999876432 234445554 47889999999987776653 11 1 247888888888
No 69
>PLN02497 probable pectinesterase
Probab=92.94 E-value=3.6 Score=37.20 Aligned_cols=119 Identities=14% Similarity=0.113 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHhhcCC-CCcEEEecCCeEE-EEEE-EecCCCceec-----eeEe--ccc---CeEEEEEceeeEEEEe
Q 042417 17 DSKAFETAWREACNWDG-IKSAVLVPPGKYL-SIRF-NFLNDSTITG-----IKSV--DSR---YFHINILGCYNLKLND 83 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~~g-~g~~v~iP~G~y~-~i~~-~~~~nv~i~g-----i~i~--ns~---~~~i~~~~s~nv~I~n 83 (249)
|-..||+||+ +..... ..-+++|-+|+|. .+.+ ....++++.| ..|. +.. .-......++++..+|
T Consensus 43 df~TIq~AId-avP~~~~~~~~I~Ik~G~Y~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v~a~~f~a~n 121 (331)
T PLN02497 43 NFTTIQSAID-SVPSNNKHWFCINVKAGLYREKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFSTLADNTVVKS 121 (331)
T ss_pred CccCHHHHHh-hccccCCceEEEEEeCcEEEEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEEecCCeEEEc
Confidence 5778999995 544322 0236889999998 2233 1234555443 1221 111 0112234567899999
Q ss_pred eEEecCCCCC---------CCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 84 LKITAHADSP---------NTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 84 ~~i~~~~~~~---------n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
++|.+....+ .+-++.+. .+...+.+|.|....|-+-...| .-+++||.++++
T Consensus 122 lT~~Nt~~~~~~~~~~~~~QAVAl~v~-gDr~~fy~C~f~G~QDTLy~~~g----------------Rqyf~~C~IeG~ 183 (331)
T PLN02497 122 ITFANSYNFPSKGNKNPRVPAVAAMIG-GDKSAFYSCGFAGVQDTLWDSDG----------------RHYFKRCTIQGA 183 (331)
T ss_pred cEEEeCCCCccccCCCCCcceEEEEec-CCcEEEEeeEEeccccceeeCCC----------------cEEEEeCEEEec
Confidence 9998754211 23344444 48899999999988877643111 246777777777
No 70
>PLN02665 pectinesterase family protein
Probab=92.74 E-value=1.9 Score=39.54 Aligned_cols=119 Identities=15% Similarity=0.167 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHhhcCC-CCcEEEecCCeEE-EEEEE-ecCCCceec-----eeEe--ccc-C-----eEEEEEceeeEE
Q 042417 17 DSKAFETAWREACNWDG-IKSAVLVPPGKYL-SIRFN-FLNDSTITG-----IKSV--DSR-Y-----FHINILGCYNLK 80 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~~g-~g~~v~iP~G~y~-~i~~~-~~~nv~i~g-----i~i~--ns~-~-----~~i~~~~s~nv~ 80 (249)
|-..||+||+ +..... ..-+|+|.+|+|. -+.+. ...++++.| ..|. +.. . -......++++.
T Consensus 79 df~TIq~AId-aiP~~~~~r~vI~Ik~GvY~EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v~a~~F~ 157 (366)
T PLN02665 79 DFKTITDAIK-SIPAGNTQRVIIDIGPGEYNEKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIVESDYFM 157 (366)
T ss_pred CccCHHHHHh-hCcccCCceEEEEEeCcEEEEEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEEECCCeE
Confidence 5778999995 443321 0246789999998 22221 223344333 1121 111 1 123345678999
Q ss_pred EEeeEEecCCCC-------CCCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 81 LNDLKITAHADS-------PNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 81 I~n~~i~~~~~~-------~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
.+|++|.+.... ..+-++.+.+ ....+.+|.|....|-+....| .-+++||.++++
T Consensus 158 a~nitf~Nta~~~~~~~~g~QAVAl~v~g-Dka~f~~C~f~G~QDTL~~~~g----------------r~yf~~CyIeG~ 220 (366)
T PLN02665 158 AANIIIKNSAPRPDGKRKGAQAVAMRISG-DKAAFYNCRFIGFQDTLCDDKG----------------RHFFKDCYIEGT 220 (366)
T ss_pred EEeeEEEeCCCCcCCCCCCcceEEEEEcC-CcEEEEcceeccccceeEeCCC----------------CEEEEeeEEeec
Confidence 999999885421 1344566554 8899999999998887754111 246788888877
No 71
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=92.33 E-value=1.7 Score=41.96 Aligned_cols=119 Identities=12% Similarity=0.086 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHhhcCCC----CcEEEecCCeEE-EEEEE-ecCCCceec-----eeEecc----cCe-----EEEEEce
Q 042417 17 DSKAFETAWREACNWDGI----KSAVLVPPGKYL-SIRFN-FLNDSTITG-----IKSVDS----RYF-----HINILGC 76 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~~g~----g~~v~iP~G~y~-~i~~~-~~~nv~i~g-----i~i~ns----~~~-----~i~~~~s 76 (249)
+-..||+||+ +...... .-+|+|.+|+|. -+.+. ...++++.| ..|... ..| .......
T Consensus 234 ~f~TI~~Av~-a~p~~~~~~~~r~vI~vk~G~Y~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~v~~ 312 (538)
T PLN03043 234 NFTTITDAIA-AAPNNSKPEDGYFVIYAREGYYEEYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFAVSG 312 (538)
T ss_pred CCcCHHHHHH-hccccCCCCcceEEEEEcCeeeEEEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEEEEC
Confidence 4678999994 5433210 238999999997 22221 233444432 122110 112 2334466
Q ss_pred eeEEEEeeEEecCCCC--CCCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 77 YNLKLNDLKITAHADS--PNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 77 ~nv~I~n~~i~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
+++..+|++|.+.... ..+-++.+. +....+.+|.|....|-+-. |. + .-+++||.+.++
T Consensus 313 ~~F~a~~it~~Ntag~~~~QAvAlrv~-~D~~~f~~C~~~gyQDTLy~-~~------------~---rq~y~~c~I~Gt 374 (538)
T PLN03043 313 ERFVAVDVTFRNTAGPEKHQAVALRNN-ADLSTFYRCSFEGYQDTLYV-HS------------L---RQFYRECDIYGT 374 (538)
T ss_pred CCEEEEeeEEEECCCCCCCceEEEEEc-CCcEEEEeeEEeccCccccc-CC------------C---cEEEEeeEEeec
Confidence 8899999999886432 234445444 47899999999998876654 11 0 247888888887
No 72
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=91.59 E-value=1.8 Score=38.76 Aligned_cols=48 Identities=13% Similarity=0.253 Sum_probs=28.7
Q ss_pred eeeEEEEeeEEecCCC-C---CCCcceEec-CcccEEEEeeEEecCCCeeEeC
Q 042417 76 CYNLKLNDLKITAHAD-S---PNTEGIHIG-SSNGSEISHSVIATGDDCVSLG 123 (249)
Q Consensus 76 s~nv~I~n~~i~~~~~-~---~n~DGi~~~-~s~nv~I~n~~i~~gDD~i~ig 123 (249)
.++..++|+++.+... + .|.-++-+. -+..+.+++|.+....|-+.++
T Consensus 188 ~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~QdTlFv~ 240 (405)
T COG4677 188 NNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQDTLFVG 240 (405)
T ss_pred cCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeeccceEEec
Confidence 3466677777766421 1 122232221 2478899999998877777663
No 73
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=90.48 E-value=5.9 Score=38.64 Aligned_cols=118 Identities=14% Similarity=0.199 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHhhcC--CCCcEEEecCCeEEE--EEEE-ecCCCceec-----eeEecccC----e-----EEEEEcee
Q 042417 17 DSKAFETAWREACNWD--GIKSAVLVPPGKYLS--IRFN-FLNDSTITG-----IKSVDSRY----F-----HINILGCY 77 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~~--g~g~~v~iP~G~y~~--i~~~-~~~nv~i~g-----i~i~ns~~----~-----~i~~~~s~ 77 (249)
|-..||+||+ +.... . .-+|+|.+|+|.- +.+. ...|+++.| ..|..... + .......+
T Consensus 283 ~f~TIq~Ai~-a~P~~~~~-r~vI~Ik~G~Y~E~~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v~~~ 360 (587)
T PLN02484 283 TFKTISEAIK-KAPEHSSR-RTIIYVKAGRYEENNLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAATGA 360 (587)
T ss_pred CcccHHHHHH-hccccCCC-cEEEEEeCCEEEEEEEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEEEcC
Confidence 4678999994 54332 2 3578999999973 3332 234555543 22222111 1 12334567
Q ss_pred eEEEEeeEEecCCCC--CCCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 78 NLKLNDLKITAHADS--PNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 78 nv~I~n~~i~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
++..+|++|.+.... ..+-++.+. +....+.+|.|....|-+-. |. ..-+++||.+.++
T Consensus 361 ~F~a~~itf~Ntag~~~~QAvAlrv~-~D~~~fy~C~~~G~QDTLy~-~~---------------~Rqyy~~C~I~Gt 421 (587)
T PLN02484 361 GFIARDMTFENWAGPAKHQAVALRVG-ADHAVVYRCNIIGYQDTLYV-HS---------------NRQFFRECDIYGT 421 (587)
T ss_pred CEEEEeeEEEECCCCCCCceEEEEec-CCcEEEEeeeEeccCccccc-CC---------------CcEEEEecEEEec
Confidence 889999999876432 244555555 48899999999988776654 11 1236788888887
No 74
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=90.29 E-value=2.9 Score=40.34 Aligned_cols=118 Identities=16% Similarity=0.192 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHhhc----CCCCcEEEecCCeEE-EEEEE-ecCCCceec-----eeEeccc----CeE-----EEEEce
Q 042417 17 DSKAFETAWREACNW----DGIKSAVLVPPGKYL-SIRFN-FLNDSTITG-----IKSVDSR----YFH-----INILGC 76 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~----~g~g~~v~iP~G~y~-~i~~~-~~~nv~i~g-----i~i~ns~----~~~-----i~~~~s 76 (249)
|-..||+||+ +... .+ .-+|+|.+|+|. .+.+. ...++++.| ..|.... .|. ......
T Consensus 234 ~f~TIq~Ai~-a~p~~~~~~~-r~vI~Ik~G~Y~E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~SaT~~v~~ 311 (539)
T PLN02995 234 HFNTVQAAID-VAGRRKVTSG-RFVIYVKRGIYQENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSATAGIEG 311 (539)
T ss_pred CccCHHHHHH-hcccccCCCc-eEEEEEeCCEeEEEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceEEEEEEC
Confidence 5678999995 4431 23 457889999997 22222 234555443 2222111 111 223456
Q ss_pred eeEEEEeeEEecCCCC--CCCcceEecCcccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 77 YNLKLNDLKITAHADS--PNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 77 ~nv~I~n~~i~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
+++..+|++|.+.... ..+-++.+. +....+.+|.|....|-+-. |+ ..-+++||.+.++
T Consensus 312 ~~F~a~nitf~Ntag~~~~QAVAlrv~-~Dr~~f~~c~~~G~QDTLy~-~~---------------~Rqyy~~C~I~Gt 373 (539)
T PLN02995 312 LHFIAKGITFRNTAGPAKGQAVALRSS-SDLSIFYKCSIEGYQDTLMV-HS---------------QRQFYRECYIYGT 373 (539)
T ss_pred CCeEEEeeEEEeCCCCCCCceEEEEEc-CCceeEEcceEecccchhcc-CC---------------CceEEEeeEEeec
Confidence 7888999999875432 234455555 48999999999998776653 11 1237888888887
No 75
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=89.52 E-value=4.9 Score=36.99 Aligned_cols=38 Identities=5% Similarity=0.160 Sum_probs=26.1
Q ss_pred ceeeEEEEeeEEecCCCCCCCcceEecCcccEEEEeeEEec
Q 042417 75 GCYNLKLNDLKITAHADSPNTEGIHIGSSNGSEISHSVIAT 115 (249)
Q Consensus 75 ~s~nv~I~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~ 115 (249)
.=.+|++.|+.+...+ ..-|+-+.+..++++.+|.|.+
T Consensus 119 gM~~VtF~ni~F~~~~---~~~g~~f~~~t~~~~hgC~F~g 156 (386)
T PF01696_consen 119 GMEGVTFVNIRFEGRD---TFSGVVFHANTNTLFHGCSFFG 156 (386)
T ss_pred eeeeeEEEEEEEecCC---ccceeEEEecceEEEEeeEEec
Confidence 3457788888887643 2446666666788888888775
No 76
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=89.16 E-value=0.72 Score=28.39 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=22.9
Q ss_pred EEEEceeeEEEEeeEEecCCCCCCCcceEecCcccEEEEeeEEe
Q 042417 71 INILGCYNLKLNDLKITAHADSPNTEGIHIGSSNGSEISHSVIA 114 (249)
Q Consensus 71 i~~~~s~nv~I~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~ 114 (249)
|.+..+.+.+|++-++.. +.|||.+..+.+-+|++..+.
T Consensus 2 I~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~ 40 (44)
T TIGR03804 2 IYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTAS 40 (44)
T ss_pred EEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEE
Confidence 344445555566666654 455777766666666666554
No 77
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=75.24 E-value=8.8 Score=23.33 Aligned_cols=40 Identities=15% Similarity=0.217 Sum_probs=35.0
Q ss_pred EEEEecCCCceeceeEecccCeEEEEEceeeEEEEeeEEec
Q 042417 48 IRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITA 88 (249)
Q Consensus 48 i~~~~~~nv~i~gi~i~ns~~~~i~~~~s~nv~I~n~~i~~ 88 (249)
|.+..+.+.+|++-++.+... +|++..+.+-+|++-++..
T Consensus 2 I~l~~s~~~~i~~N~i~~~~~-GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 2 IYLESSSNNTLENNTASNNSY-GIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred EEEEecCCCEEECcEEeCCCC-EEEEEeCCCCEeECCEEEc
Confidence 678889999999999999877 9999999888888877764
No 78
>PLN02480 Probable pectinesterase
Probab=74.38 E-value=42 Score=30.55 Aligned_cols=59 Identities=7% Similarity=-0.008 Sum_probs=38.0
Q ss_pred ecCCCceeceeEeccc---------CeEEEE-EceeeEEEEeeEEecCCCCCCCcceEecCcccEEEEeeEEecC
Q 042417 52 FLNDSTITGIKSVDSR---------YFHINI-LGCYNLKLNDLKITAHADSPNTEGIHIGSSNGSEISHSVIATG 116 (249)
Q Consensus 52 ~~~nv~i~gi~i~ns~---------~~~i~~-~~s~nv~I~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~g 116 (249)
..+++++++|+|+|+. .-.+-+ ..++.+.+++|+|.+..|. +... ...-..++|+|+..
T Consensus 130 ~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDT-----Ly~~-~gR~yf~~C~IeG~ 198 (343)
T PLN02480 130 EAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNT-----LFDY-KGRHYYHSCYIQGS 198 (343)
T ss_pred ECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccce-----eEeC-CCCEEEEeCEEEee
Confidence 3678999999999982 123444 4678999999999985542 2211 12445566665543
No 79
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=69.29 E-value=21 Score=31.77 Aligned_cols=100 Identities=16% Similarity=0.227 Sum_probs=54.2
Q ss_pred EEEEEecCCCceeceeEec-cc---------CeEEEEEceeeEEEEeeEEecCCCCC----CCcceEecCcccEEEEeeE
Q 042417 47 SIRFNFLNDSTITGIKSVD-SR---------YFHINILGCYNLKLNDLKITAHADSP----NTEGIHIGSSNGSEISHSV 112 (249)
Q Consensus 47 ~i~~~~~~nv~i~gi~i~n-s~---------~~~i~~~~s~nv~I~n~~i~~~~~~~----n~DGi~~~~s~nv~I~n~~ 112 (249)
+++..+.+++.|++++-+| .| .-++.++.|+|..|+|+...+....- ---|=.+.--+|....+..
T Consensus 261 lvhvengkhfvirnvkaknitpdfskkagidnatvaiygcdnfvidni~mvnsagmligygvikg~ylsipqnfkln~i~ 340 (464)
T PRK10123 261 LIHVENGKHFVIRNIKAKNITPDFSKKAGIDNATVAIYGCDNFVIDNIEMINSAGMLIGYGVIKGKYLSIPQNFKLNNIQ 340 (464)
T ss_pred eEEecCCcEEEEEeeeccccCCCchhhcCCCcceEEEEcccceEEeccccccccccEEEeeeeeccEecccccceeceEe
Confidence 6666777777777776665 22 23477888888888888776533110 0112223334666666666
Q ss_pred EecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 113 IATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 113 i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
+.+..=.-.+ .||.|-|- . -.+=|.+.|+.|...
T Consensus 341 ldn~~l~ykl-rgiqissg----n--atsfvaitn~~mkra 374 (464)
T PRK10123 341 LDNTHLAYKL-RGIQISAG----N--AVSFVALTNIEMKRA 374 (464)
T ss_pred ecccccceee-eeeEeccC----C--cceEEEEeeeehhhh
Confidence 6554333333 56665432 1 123345566666554
No 80
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=64.42 E-value=1.1e+02 Score=28.70 Aligned_cols=73 Identities=10% Similarity=0.109 Sum_probs=45.8
Q ss_pred EEEEecCCCceeceeEecccC--------eEEEE-EceeeEEEEeeEEecCCCCCCC------cceEecCcccEEEEeeE
Q 042417 48 IRFNFLNDSTITGIKSVDSRY--------FHINI-LGCYNLKLNDLKITAHADSPNT------EGIHIGSSNGSEISHSV 112 (249)
Q Consensus 48 i~~~~~~nv~i~gi~i~ns~~--------~~i~~-~~s~nv~I~n~~i~~~~~~~n~------DGi~~~~s~nv~I~n~~ 112 (249)
-.....+++..++|+|+|+.. -.+-+ ...+.+.+.+|+|.+..|.--. .+...........++|+
T Consensus 200 Tv~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~Cy 279 (422)
T PRK10531 200 VFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSY 279 (422)
T ss_pred EEEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCE
Confidence 344568999999999999743 12222 3578999999999986542111 11111122357788999
Q ss_pred EecCCCee
Q 042417 113 IATGDDCV 120 (249)
Q Consensus 113 i~~gDD~i 120 (249)
|+..=|=|
T Consensus 280 IeG~VDFI 287 (422)
T PRK10531 280 IEGDVDFV 287 (422)
T ss_pred EeecccEE
Confidence 88654443
No 81
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=63.17 E-value=28 Score=32.52 Aligned_cols=39 Identities=26% Similarity=0.451 Sum_probs=20.0
Q ss_pred cEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 105 GSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 105 nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
|-.|+|...+. .+|+-+|.-|+ .+.|+||++++|.=.+.
T Consensus 312 nHiidNi~~~~-------~lGVG~~~DG~---~~yvsni~~~d~~g~G~ 350 (549)
T PF09251_consen 312 NHIIDNILVRG-------SLGVGIGMDGK---GGYVSNITVQDCAGAGI 350 (549)
T ss_dssp --EEEEEEEES--------SSESCEEECC---S-EEEEEEEES-SSESE
T ss_pred hhhhhhhheec-------cceeeeeecCC---CceEeeEEeecccCCce
Confidence 44556655553 34555554442 35788888888754443
No 82
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=61.48 E-value=1e+02 Score=26.17 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=43.8
Q ss_pred cEEEecCC-eEE--EEEEEecCCCceeceeEecccCeEEEEEceeeEEEEeeEEecCCCCCCCcceEecCcccEEEEeeE
Q 042417 36 SAVLVPPG-KYL--SIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADSPNTEGIHIGSSNGSEISHSV 112 (249)
Q Consensus 36 ~~v~iP~G-~y~--~i~~~~~~nv~i~gi~i~ns~~~~i~~~~s~nv~I~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~ 112 (249)
.++.+++| +|. +.+|.+.+...=.+- .+..+.-.|.--+..+|+|+.|-. +..||||..+ +-+|+|+.
T Consensus 20 ~~i~V~aG~~fDG~~k~~~~~~~~~~~~~---q~e~q~~vF~le~GatlkNvIiG~----~~~dGIHC~G--~Ctl~NVw 90 (215)
T PF03211_consen 20 STIVVKAGEVFDGGMKRYDRGPSACGDGG---QSEDQDPVFILEDGATLKNVIIGA----NQADGIHCKG--SCTLENVW 90 (215)
T ss_dssp S-EEE-TTEEEEEEEEEEEECCCTT--SS---SGSC---SEEEETTEEEEEEEETS----S-TT-EEEES--CEEEEEEE
T ss_pred cCeEECCCceEeCCeeEEccCCCccCCCC---cCCccceEEEecCCCEEEEEEEcC----CCcCceEEcC--CEEEEEEE
Confidence 36677788 574 566665422221111 111111112222468899998864 3679999987 67889988
Q ss_pred Eec-CCCeeEe
Q 042417 113 IAT-GDDCVSL 122 (249)
Q Consensus 113 i~~-gDD~i~i 122 (249)
++. +.|++.+
T Consensus 91 wedVcEDA~T~ 101 (215)
T PF03211_consen 91 WEDVCEDAATF 101 (215)
T ss_dssp ESS-SSESEEE
T ss_pred ecccceeeeEE
Confidence 877 8888888
No 83
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=60.79 E-value=62 Score=28.03 Aligned_cols=51 Identities=22% Similarity=0.328 Sum_probs=38.5
Q ss_pred EEEEecCCCceeceeEecc---cCeEEEEEceeeEEEEeeEEecCCCCCCCcceEecCc
Q 042417 48 IRFNFLNDSTITGIKSVDS---RYFHINILGCYNLKLNDLKITAHADSPNTEGIHIGSS 103 (249)
Q Consensus 48 i~~~~~~nv~i~gi~i~ns---~~~~i~~~~s~nv~I~n~~i~~~~~~~n~DGi~~~~s 103 (249)
+.+....+..|+|++|+|+ ....+.+.++ +.+|+|++|... ..+||.+...
T Consensus 91 ~tI~~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~~----~~~GI~v~g~ 144 (246)
T PF07602_consen 91 VTIILANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTNN----GREGIFVTGT 144 (246)
T ss_pred EEEEecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEECC----ccccEEEEee
Confidence 5556688999999999998 3456777776 999999999873 2467765443
No 84
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=60.64 E-value=97 Score=25.71 Aligned_cols=94 Identities=15% Similarity=0.019 Sum_probs=54.0
Q ss_pred CCceeceeEecccCeEEEEE---------ceeeEEEEeeEEecCCCCC---CCcceEecCcccEEEEeeEEecCCCeeEe
Q 042417 55 DSTITGIKSVDSRYFHINIL---------GCYNLKLNDLKITAHADSP---NTEGIHIGSSNGSEISHSVIATGDDCVSL 122 (249)
Q Consensus 55 nv~i~gi~i~ns~~~~i~~~---------~s~nv~I~n~~i~~~~~~~---n~DGi~~~~s~nv~I~n~~i~~gDD~i~i 122 (249)
++.|=+-+|.+...|.|.+. ..++|.|++-.|.....++ ...||-..+=.|.+|||..|..--
T Consensus 3 dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y----- 77 (198)
T PF08480_consen 3 DIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVY----- 77 (198)
T ss_pred ceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccc-----
Confidence 44555556666555554443 3358899988887654433 466777777779999999997522
Q ss_pred CcceE-EccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 123 GHGIS-VGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 123 g~Gi~-iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
+.|+. +-..+..+..+.-.-.++||..+.++
T Consensus 78 ~aai~~~y~~~~~sp~gsgyttivRNNII~NT 109 (198)
T PF08480_consen 78 HAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNT 109 (198)
T ss_pred cceEEEEecccccCCCCCceEEEEEcceEeee
Confidence 11221 11111111223334477888777754
No 85
>PLN02682 pectinesterase family protein
Probab=57.81 E-value=1.6e+02 Score=27.20 Aligned_cols=62 Identities=8% Similarity=-0.051 Sum_probs=39.9
Q ss_pred EecCCCceeceeEecccCe---------EEEE-EceeeEEEEeeEEecCCCCCCCcceEecCcccEEEEeeEEecCCC
Q 042417 51 NFLNDSTITGIKSVDSRYF---------HINI-LGCYNLKLNDLKITAHADSPNTEGIHIGSSNGSEISHSVIATGDD 118 (249)
Q Consensus 51 ~~~~nv~i~gi~i~ns~~~---------~i~~-~~s~nv~I~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD 118 (249)
...+++..++|+|+|+..+ .+-+ ..++...+.+|+|.+..| =+... .-.-..++|+|+..=|
T Consensus 160 v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QD-----TLy~~-~gRqyf~~C~IeG~VD 231 (369)
T PLN02682 160 VNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQD-----TLYDH-LGRHYFKDCYIEGSVD 231 (369)
T ss_pred EECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEecccc-----ceEEC-CCCEEEEeeEEccccc
Confidence 3467889999999996421 2323 357899999999998544 22222 1345667777765434
No 86
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=56.14 E-value=1.2e+02 Score=28.44 Aligned_cols=96 Identities=18% Similarity=0.180 Sum_probs=44.5
Q ss_pred CCceeceeEecccCeEEEEEceeeEEEEeeEEecCCCCCCCcceEecCcccEEEEeeEEecCCCeeEeCcceEE--ccCC
Q 042417 55 DSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADSPNTEGIHIGSSNGSEISHSVIATGDDCVSLGHGISV--GSLG 132 (249)
Q Consensus 55 nv~i~gi~i~ns~~~~i~~~~s~nv~I~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD~i~ig~Gi~i--Gs~g 132 (249)
.-++++-+|++|.. .+.+.+..+-+|++-.|.+.....++-||.+.. ++-+|.|.+|..-. +..+..++.+ |..+
T Consensus 224 ~N~ir~Ntf~es~G-~ltlRHGn~n~V~gN~FiGng~~~~tGGIRIi~-~~H~I~nNY~~gl~-g~~~~~~~~v~ng~p~ 300 (425)
T PF14592_consen 224 DNTIRNNTFRESQG-SLTLRHGNRNTVEGNVFIGNGVKEGTGGIRIIG-EGHTIYNNYFEGLT-GTRFRGALAVMNGVPN 300 (425)
T ss_dssp T-EEES-EEES-SS-EEEEEE-SS-EEES-EEEE-SSSS-B--EEE-S-BS-EEES-EEEESS-B-TTTTSEE-EEE--B
T ss_pred CceEeccEEEeccc-eEEEecCCCceEeccEEecCCCcCCCCceEEec-CCcEEEcceeeccc-cceeecceeeccCCCC
Confidence 44566667777643 455666666677776666644334677999987 77788888887632 1111222321 1111
Q ss_pred CCCC-CCceEeEEEEeeEEEcc
Q 042417 133 KGIN-DEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 133 ~~~~-~~~v~ni~v~n~~~~~~ 153 (249)
.... ...+.|+.|.+.+|.++
T Consensus 301 s~ln~y~qv~nv~I~~NT~In~ 322 (425)
T PF14592_consen 301 SPLNRYDQVKNVLIANNTFINC 322 (425)
T ss_dssp STTSTT---BSEEEES-EEES-
T ss_pred CCcccccccceeEEecceEEcc
Confidence 1111 23589999999999976
No 87
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=51.03 E-value=1.3e+02 Score=28.95 Aligned_cols=73 Identities=14% Similarity=-0.056 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHhhcCCCCcEEEec-----C--CeEE-EEEEEecCCCceeceeEecccCe----EEEE-EceeeEEEEe
Q 042417 17 DSKAFETAWREACNWDGIKSAVLVP-----P--GKYL-SIRFNFLNDSTITGIKSVDSRYF----HINI-LGCYNLKLND 83 (249)
Q Consensus 17 dt~Aiq~Ai~~a~~~~g~g~~v~iP-----~--G~y~-~i~~~~~~nv~i~gi~i~ns~~~----~i~~-~~s~nv~I~n 83 (249)
|-..||+||+.+-..+|+..||+-= . ++|. .-.....+++..++++|+|.... .+-+ ..++...+.+
T Consensus 225 ~f~tiq~Ai~a~p~~~g~~~TiIt~~~~~~~g~~t~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~ 304 (497)
T PLN02698 225 NYETVSEAITAAHGNHGKYSTVIVGDDSVTGGTSVPDTATFTITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYR 304 (497)
T ss_pred CcccHHHHHHhhhhcCCCCceEEEeCCcccCCCccccceeEEEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEc
Confidence 5678999995432222323344320 1 1222 11222356666666666665321 1222 2345666666
Q ss_pred eEEecC
Q 042417 84 LKITAH 89 (249)
Q Consensus 84 ~~i~~~ 89 (249)
|.|.+.
T Consensus 305 c~~~G~ 310 (497)
T PLN02698 305 CSIAGY 310 (497)
T ss_pred ceeecc
Confidence 666653
No 88
>PLN02773 pectinesterase
Probab=49.23 E-value=1.4e+02 Score=26.84 Aligned_cols=63 Identities=10% Similarity=0.028 Sum_probs=38.9
Q ss_pred ecCCCceeceeEecccC----eEEEE-EceeeEEEEeeEEecCCCCCCCcceEecCcccEEEEeeEEecCCCee
Q 042417 52 FLNDSTITGIKSVDSRY----FHINI-LGCYNLKLNDLKITAHADSPNTEGIHIGSSNGSEISHSVIATGDDCV 120 (249)
Q Consensus 52 ~~~nv~i~gi~i~ns~~----~~i~~-~~s~nv~I~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD~i 120 (249)
.++++.+++|+|+|+.. -.+-+ ..++.+.+.+|+|.+.. |-+.... -....++|+|...=|-|
T Consensus 100 ~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~Q-----DTL~~~~-gr~yf~~c~IeG~VDFI 167 (317)
T PLN02773 100 EGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQ-----DTLYLHY-GKQYLRDCYIEGSVDFI 167 (317)
T ss_pred ECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeeccc-----ceeEeCC-CCEEEEeeEEeecccEE
Confidence 46788888888888632 11222 24678888888888743 3333332 35678888887554443
No 89
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=46.45 E-value=28 Score=17.51 Aligned_cols=14 Identities=14% Similarity=0.261 Sum_probs=9.0
Q ss_pred ccEEEEeeEEecCC
Q 042417 104 NGSEISHSVIATGD 117 (249)
Q Consensus 104 ~nv~I~n~~i~~gD 117 (249)
.+++|+++.|....
T Consensus 2 ~~~~i~~n~i~~~~ 15 (26)
T smart00710 2 SNVTIENNTIRNNG 15 (26)
T ss_pred CCEEEECCEEEeCC
Confidence 46677777776644
No 90
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=42.40 E-value=2.6e+02 Score=27.21 Aligned_cols=62 Identities=6% Similarity=-0.062 Sum_probs=41.3
Q ss_pred ecCCCceeceeEecccC----eEEEE-EceeeEEEEeeEEecCCCCCCCcceEecCcccEEEEeeEEecCCCe
Q 042417 52 FLNDSTITGIKSVDSRY----FHINI-LGCYNLKLNDLKITAHADSPNTEGIHIGSSNGSEISHSVIATGDDC 119 (249)
Q Consensus 52 ~~~nv~i~gi~i~ns~~----~~i~~-~~s~nv~I~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD~ 119 (249)
..+++..++++|+|... -.+-+ ..++.+.+.+|.|.+..| =+...+ .....++|+|...=|-
T Consensus 328 ~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QD-----TLy~~~-~rq~y~~C~I~GtVDF 394 (553)
T PLN02708 328 LGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQD-----TLYAHS-LRQFYKSCRIQGNVDF 394 (553)
T ss_pred EcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccc-----cceeCC-CceEEEeeEEeecCCE
Confidence 46799999999999653 22333 357899999999998654 333222 3445677777754443
No 91
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=37.92 E-value=1.6e+02 Score=27.01 Aligned_cols=65 Identities=11% Similarity=-0.011 Sum_probs=32.1
Q ss_pred EEEEEecCCCceeceeEecccCeEEEEEceeeEEEEeeEEec-----------------CCCCCCCcceEecCcccEEEE
Q 042417 47 SIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITA-----------------HADSPNTEGIHIGSSNGSEIS 109 (249)
Q Consensus 47 ~i~~~~~~nv~i~gi~i~ns~~~~i~~~~s~nv~I~n~~i~~-----------------~~~~~n~DGi~~~~s~nv~I~ 109 (249)
.|+++++++..|.+-.|.-. ..+|....|++-.|++-++.- .....|.-|.-+.-|+.++|.
T Consensus 152 GI~vyNa~~a~V~~ndisy~-rDgIy~~~S~~~~~~gnr~~~~RygvHyM~t~~s~i~dn~s~~N~vG~ALMys~~l~V~ 230 (408)
T COG3420 152 GIYVYNAPGALVVGNDISYG-RDGIYSDTSQHNVFKGNRFRDLRYGVHYMYTNDSRISDNSSRDNRVGYALMYSDRLKVS 230 (408)
T ss_pred ceEEEcCCCcEEEcCccccc-cceEEEcccccceecccchhheeeeEEEEeccCcEeecccccCCcceEEEEEeccEEEE
Confidence 56666666666665444321 233444444444444333221 111125556666666777776
Q ss_pred eeE
Q 042417 110 HSV 112 (249)
Q Consensus 110 n~~ 112 (249)
+..
T Consensus 231 ~nr 233 (408)
T COG3420 231 DNR 233 (408)
T ss_pred cCc
Confidence 655
No 92
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=36.83 E-value=2.6e+02 Score=23.68 Aligned_cols=62 Identities=11% Similarity=0.046 Sum_probs=44.7
Q ss_pred cCCCceeceeEecccCeEEEEEceeeEEEEeeEEecCCCCCCCcceEecCcc-cEEEEeeEEecCCCee
Q 042417 53 LNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADSPNTEGIHIGSSN-GSEISHSVIATGDDCV 120 (249)
Q Consensus 53 ~~nv~i~gi~i~ns~~~~i~~~~s~nv~I~n~~i~~~~~~~n~DGi~~~~s~-nv~I~n~~i~~gDD~i 120 (249)
.+..+++++.|-.+....||... +.+|+|+.++.- -.|++.+.+.. .+.|.+.-.++.+|=|
T Consensus 60 e~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwedV----cEDA~T~kg~~~~~~I~ggga~~A~DKV 122 (215)
T PF03211_consen 60 EDGATLKNVIIGANQADGIHCKG--SCTLENVWWEDV----CEDAATFKGDGGTVTIIGGGARNASDKV 122 (215)
T ss_dssp ETTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEE
T ss_pred cCCCEEEEEEEcCCCcCceEEcC--CEEEEEEEeccc----ceeeeEEcCCCceEEEeCCcccCCCccE
Confidence 36777888888777778899887 689999988763 46888888766 7778777777665544
No 93
>PF13345 DUF4098: Domain of unknown function (DUF4098)
Probab=35.03 E-value=1.3e+02 Score=19.65 Aligned_cols=37 Identities=16% Similarity=0.282 Sum_probs=19.4
Q ss_pred eeEEeEEEEeEEEEccCC-CceecEEEEeEEEEEcCce
Q 042417 184 VKTSNVRFNNIRGTSANK-IPCQNIGIGNINWVYNGVN 220 (249)
Q Consensus 184 ~~i~nI~~~ni~g~~~~~-~~~~~i~~~nv~i~~~~g~ 220 (249)
..++++....++.....+ ..++.....++.++...|+
T Consensus 35 i~i~~~~~~~~~~~~~~G~i~~~~~~~~~~~i~t~~G~ 72 (76)
T PF13345_consen 35 IDIQNVESSSIKVSTSSGDISLEGTEAGNVDISTSSGD 72 (76)
T ss_pred EEEEEeeeeeeeeeccccCEEEeccceEEEEEEeccee
Confidence 455555555555544443 3444445556666665554
No 94
>PLN02176 putative pectinesterase
Probab=34.95 E-value=3.5e+02 Score=24.60 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=37.1
Q ss_pred ecCCCceeceeEecccC----------eEEEE-EceeeEEEEeeEEecCCCCCCCcceEecCcccEEEEeeEEecC
Q 042417 52 FLNDSTITGIKSVDSRY----------FHINI-LGCYNLKLNDLKITAHADSPNTEGIHIGSSNGSEISHSVIATG 116 (249)
Q Consensus 52 ~~~nv~i~gi~i~ns~~----------~~i~~-~~s~nv~I~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~g 116 (249)
.++++..++|+|+|... -.+-+ ...+...+.+|+|.+..| -+... ...-..++|+|+..
T Consensus 120 ~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QD-----TLy~~-~gRqyf~~CyIeG~ 189 (340)
T PLN02176 120 YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQD-----TLFDG-KGRHYYKRCVISGG 189 (340)
T ss_pred ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccc-----eeEeC-CcCEEEEecEEEec
Confidence 47889999999999632 22222 356889999999998543 22222 13445566665543
No 95
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=34.91 E-value=42 Score=26.95 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=16.4
Q ss_pred CcEEEecCCeEEEEEEEecCCCceeceeEe-cccCeE
Q 042417 35 KSAVLVPPGKYLSIRFNFLNDSTITGIKSV-DSRYFH 70 (249)
Q Consensus 35 g~~v~iP~G~y~~i~~~~~~nv~i~gi~i~-ns~~~~ 70 (249)
|.-+.+|+|+|+-+.+. +.-.|.-+++. +.+.|.
T Consensus 122 GDli~vP~g~~HrF~~~--~~~~i~aiRlF~~~~gWv 156 (157)
T PF03079_consen 122 GDLIVVPAGTYHRFTLG--ESPYIKAIRLFKDEPGWV 156 (157)
T ss_dssp TCEEEE-TT--EEEEES--TTSSEEEEEEESSCGGEE
T ss_pred CCEEecCCCCceeEEcC--CCCcEEEEEeecCCCCcc
Confidence 57888899988544443 33334444433 455553
No 96
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=33.84 E-value=1.4e+02 Score=26.53 Aligned_cols=62 Identities=8% Similarity=0.027 Sum_probs=36.9
Q ss_pred ecCCCceeceeEecccCe------EEEEEceeeEEEEeeEEecCCCCCCCcceEecCcccEEEEeeEEecCCCee
Q 042417 52 FLNDSTITGIKSVDSRYF------HINILGCYNLKLNDLKITAHADSPNTEGIHIGSSNGSEISHSVIATGDDCV 120 (249)
Q Consensus 52 ~~~nv~i~gi~i~ns~~~------~i~~~~s~nv~I~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD~i 120 (249)
..+++.+++|+|+|+... .+. ..++...+.+|.|.+.. |-+.... .+..++||+|+..-|-|
T Consensus 85 ~a~~f~~~nit~~Nt~g~~~~qAvAl~-~~~d~~~f~~c~~~g~Q-----DTL~~~~-~r~y~~~c~IeG~vDFI 152 (298)
T PF01095_consen 85 NADDFTAENITFENTAGPSGGQAVALR-VSGDRAAFYNCRFLGYQ-----DTLYANG-GRQYFKNCYIEGNVDFI 152 (298)
T ss_dssp -STT-EEEEEEEEEHCSGSG----SEE-ET-TSEEEEEEEEE-ST-----T-EEE-S-SEEEEES-EEEESEEEE
T ss_pred cccceeeeeeEEecCCCCcccceeeee-ecCCcEEEEEeEEcccc-----ceeeecc-ceeEEEeeEEEecCcEE
Confidence 467888889999886421 133 35678888999988743 4444443 45678888888655544
No 97
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=33.43 E-value=32 Score=29.48 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=25.7
Q ss_pred CeeeeecCccCCCccchH------------HHHHHHHHHHhhcCCCCcEEEe--cCCe
Q 042417 1 VFNVKDFGAVADGIKDDS------------KAFETAWREACNWDGIKSAVLV--PPGK 44 (249)
Q Consensus 1 ~~~v~dfGA~gdg~~ddt------------~Aiq~Ai~~a~~~~g~g~~v~i--P~G~ 44 (249)
++|++||..-.-...||+ +.|-+||+.+++... ..|++ |.|.
T Consensus 35 ~~n~Rdf~~dkh~~VDD~pyGGG~GMvmk~epi~~Al~~~~~~~~--~~vi~lsP~G~ 90 (240)
T COG0336 35 VVNPRDFATDKHKTVDDTPYGGGAGMVMKPEPLFDALDSVKAAKK--AKVILLSPQGK 90 (240)
T ss_pred eecHHHhccCcCcccCCccCCCCCccEeccHHHHHHHHHHHhccC--CeEEEECCCCC
Confidence 356677765544444554 568999977665432 34444 8887
No 98
>PLN02665 pectinesterase family protein
Probab=31.10 E-value=2.4e+02 Score=25.99 Aligned_cols=11 Identities=36% Similarity=0.715 Sum_probs=6.4
Q ss_pred EEEEeeEEEcc
Q 042417 143 LTVRNCTFTGT 153 (249)
Q Consensus 143 i~v~n~~~~~~ 153 (249)
..|.||.|.+-
T Consensus 189 a~f~~C~f~G~ 199 (366)
T PLN02665 189 AAFYNCRFIGF 199 (366)
T ss_pred EEEEcceeccc
Confidence 45666666655
No 99
>PLN02432 putative pectinesterase
Probab=28.95 E-value=2.9e+02 Score=24.56 Aligned_cols=63 Identities=6% Similarity=-0.012 Sum_probs=42.3
Q ss_pred ecCCCceeceeEecccC---eEEEE-EceeeEEEEeeEEecCCCCCCCcceEecCcccEEEEeeEEecCCCee
Q 042417 52 FLNDSTITGIKSVDSRY---FHINI-LGCYNLKLNDLKITAHADSPNTEGIHIGSSNGSEISHSVIATGDDCV 120 (249)
Q Consensus 52 ~~~nv~i~gi~i~ns~~---~~i~~-~~s~nv~I~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD~i 120 (249)
..+++.+++|+|+|... -.+-+ ...+...+.+|.|.+.. |-+.... -.-..+||+|...=|-|
T Consensus 92 ~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~Q-----DTLy~~~-gr~yf~~c~I~G~VDFI 158 (293)
T PLN02432 92 LASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQ-----DTLLDDT-GRHYYRNCYIEGATDFI 158 (293)
T ss_pred ECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEeccc-----ceeEECC-CCEEEEeCEEEecccEE
Confidence 46788899999998632 12222 35688999999999854 3443332 45688999998655544
No 100
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=27.87 E-value=3.9e+02 Score=26.16 Aligned_cols=12 Identities=0% Similarity=-0.139 Sum_probs=7.4
Q ss_pred ccEEEEeeEEec
Q 042417 104 NGSEISHSVIAT 115 (249)
Q Consensus 104 ~nv~I~n~~i~~ 115 (249)
+++..+|.+|+|
T Consensus 340 ~~F~a~nitf~N 351 (566)
T PLN02713 340 QNFVAVNITFRN 351 (566)
T ss_pred CCeEEEeeEEEe
Confidence 556666666666
No 101
>PF11429 Colicin_D: Colicin D; InterPro: IPR024440 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). This entry represents a domain found in the C terminus of colicin D, which is responsible for its catalytic activity []. The domain is also found in some S-type pyocins, which are also bacteriocins.; GO: 0004540 ribonuclease activity; PDB: 1TFO_A 1V74_A 1TFK_A.
Probab=27.16 E-value=75 Score=23.18 Aligned_cols=37 Identities=30% Similarity=0.408 Sum_probs=18.2
Q ss_pred eecCccC-CCccchHHHHHHHHHHHhhcCCCCcEEEecCCeEE
Q 042417 5 KDFGAVA-DGIKDDSKAFETAWREACNWDGIKSAVLVPPGKYL 46 (249)
Q Consensus 5 ~dfGA~g-dg~~ddt~Aiq~Ai~~a~~~~g~g~~v~iP~G~y~ 46 (249)
.|||-.+ +.....-..|+.||..-... +.+| ..|+|.
T Consensus 10 ~DFGi~~~~~N~~t~~~F~~aI~~hi~~---~~tv--~~GtYr 47 (92)
T PF11429_consen 10 GDFGITGTNWNKETLEEFEDAIKEHIKN---PDTV--EKGTYR 47 (92)
T ss_dssp GGGT------SHHHHHHHHHHHHHHHH----TT-E--E--BET
T ss_pred cccCcccCCCChhhHHHHHHHHHHHhCC---CCeE--ecccee
Confidence 4899888 44444447799999655443 3464 489985
No 102
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=27.05 E-value=3.6e+02 Score=26.23 Aligned_cols=11 Identities=18% Similarity=0.495 Sum_probs=5.8
Q ss_pred EEEEeeEEEcc
Q 042417 143 LTVRNCTFTGT 153 (249)
Q Consensus 143 i~v~n~~~~~~ 153 (249)
..|.||.|.+-
T Consensus 349 ~~fy~C~~~G~ 359 (537)
T PLN02506 349 SAFYRCSMEGY 359 (537)
T ss_pred EEEEcceeecc
Confidence 44555555554
No 103
>PLN02304 probable pectinesterase
Probab=26.97 E-value=4.6e+02 Score=24.29 Aligned_cols=62 Identities=10% Similarity=0.033 Sum_probs=37.6
Q ss_pred cCCCceeceeEecccC---------eEEEE-EceeeEEEEeeEEecCCCCCCCcceEecCcccEEEEeeEEecCCCee
Q 042417 53 LNDSTITGIKSVDSRY---------FHINI-LGCYNLKLNDLKITAHADSPNTEGIHIGSSNGSEISHSVIATGDDCV 120 (249)
Q Consensus 53 ~~nv~i~gi~i~ns~~---------~~i~~-~~s~nv~I~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD~i 120 (249)
.+++..++|+|+|+.. -.+-+ ..++...+.+|.|.+..+ -+.... -....++|+|+..=|-|
T Consensus 161 a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QD-----TLy~~~-gR~Yf~~CyIeG~VDFI 232 (379)
T PLN02304 161 ASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQD-----TLHDDR-GRHYFKDCYIQGSIDFI 232 (379)
T ss_pred CCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccc-----eeEeCC-CCEEEEeeEEcccccEE
Confidence 5677788888887631 12222 346788888888887443 333222 35667888887544433
No 104
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=26.71 E-value=2.6e+02 Score=20.55 Aligned_cols=66 Identities=18% Similarity=0.127 Sum_probs=35.9
Q ss_pred EEEEEecCCCceeceeEecccCeEEEE--------EceeeEEEEeeEEecCCCCCCCcceEecCcccEEEEeeEEe
Q 042417 47 SIRFNFLNDSTITGIKSVDSRYFHINI--------LGCYNLKLNDLKITAHADSPNTEGIHIGSSNGSEISHSVIA 114 (249)
Q Consensus 47 ~i~~~~~~nv~i~gi~i~ns~~~~i~~--------~~s~nv~I~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~ 114 (249)
.+.+. .+++.++|+++.++..+...+ ..+.+..+.+-.+..... .+..|+.+..+.+..+++..+.
T Consensus 39 ~~~i~-~~~~~~~G~~~~~~~~~G~~~~~~~~~~~~~~~~~~i~~N~~~~~~~-~~~~Gi~~~~~~~~~~~~N~i~ 112 (146)
T smart00722 39 NITIN-SNDVRVDGITIGGSTVTGIYVSASGDGVIQNTGKNLIIDNVTINGTE-GSGAGIVVTAGSEGLFIGNRII 112 (146)
T ss_pred EEEEe-CCCCEEECeEEEeEEeeCcccccCCceEecCccccEEEcceecCCCc-cceEEEEEECCccceEecCeEE
Confidence 44444 567789999888731111111 233455555555443211 3477888876665555555554
No 105
>PF01186 Lysyl_oxidase: Lysyl oxidase ; InterPro: IPR001695 Lysyl oxidase (1.4.3.13 from EC) (LOX) [] is an extracellular copper-dependent enzyme that catalyses the oxidative deamination of peptidyl lysine residues in precursors of various collagens and elastins, yielding alpha-aminoadipic-delta-semialdehyde. The deaminated lysines are then able to form semialdehyde cross-links, resulting in the formation of insoluble collagen and elastin fibres in the extracellular matrix []. The active site of LOX resides towards the C terminus: this region also binds a single copper atom in an octahedral coordination complex involving at least 3 His residues []. Four histidine residues are clustered in a central region of the enzyme. This region is thought to be involved in cooper-binding and is called the 'copper-talon' [].; GO: 0005507 copper ion binding, 0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor, 0055114 oxidation-reduction process
Probab=26.63 E-value=1.1e+02 Score=25.71 Aligned_cols=11 Identities=45% Similarity=1.096 Sum_probs=6.3
Q ss_pred ecCCeEEEEEEE
Q 042417 40 VPPGKYLSIRFN 51 (249)
Q Consensus 40 iP~G~y~~i~~~ 51 (249)
+|+|+| .|.+.
T Consensus 157 vp~G~Y-~l~V~ 167 (205)
T PF01186_consen 157 VPPGTY-ILQVT 167 (205)
T ss_pred CCCccE-EEEEe
Confidence 677776 44443
No 106
>PLN02671 pectinesterase
Probab=26.50 E-value=3.1e+02 Score=25.21 Aligned_cols=60 Identities=10% Similarity=0.056 Sum_probs=28.6
Q ss_pred cCCCceeceeEecccC--------eEEEE-EceeeEEEEeeEEecCCCCCCCcceEecCcccEEEEeeEEecCCC
Q 042417 53 LNDSTITGIKSVDSRY--------FHINI-LGCYNLKLNDLKITAHADSPNTEGIHIGSSNGSEISHSVIATGDD 118 (249)
Q Consensus 53 ~~nv~i~gi~i~ns~~--------~~i~~-~~s~nv~I~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD 118 (249)
.+++..++|+|+|... -.+-+ ..++.+.+.+|+|.+..+ -+.... -.-..++|+|+..=|
T Consensus 153 a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~QD-----TLy~~~-gR~yf~~CyIeG~VD 221 (359)
T PLN02671 153 SDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQD-----TLLDET-GSHYFYQCYIQGSVD 221 (359)
T ss_pred CCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEecccc-----ccEeCC-CcEEEEecEEEEecc
Confidence 4555566666666511 11111 234566666666665332 222111 234566666664333
No 107
>PF07157 DNA_circ_N: DNA circularisation protein N-terminus; InterPro: IPR009826 This entry represents the N terminus (approximately 100 residues) of a number of phage DNA circulation proteins.
Probab=25.39 E-value=1.2e+02 Score=22.06 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=12.0
Q ss_pred HHHHHHhhcCCCCcEEEec
Q 042417 23 TAWREACNWDGIKSAVLVP 41 (249)
Q Consensus 23 ~Ai~~a~~~~g~g~~v~iP 41 (249)
+||-+||.+.| .++++-|
T Consensus 67 ~~L~~al~~~G-~G~LvHP 84 (93)
T PF07157_consen 67 DALIAALEAPG-PGELVHP 84 (93)
T ss_pred HHHHHHHcCCC-CeEEecC
Confidence 34445556677 7899888
No 108
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=25.37 E-value=3.5e+02 Score=26.33 Aligned_cols=11 Identities=27% Similarity=0.694 Sum_probs=6.2
Q ss_pred EEEEeeEEEcc
Q 042417 143 LTVRNCTFTGT 153 (249)
Q Consensus 143 i~v~n~~~~~~ 153 (249)
..|.+|.|.+-
T Consensus 347 ~~fy~c~~~G~ 357 (541)
T PLN02416 347 VALYRCTINGY 357 (541)
T ss_pred EEEEcceEecc
Confidence 45566666554
No 109
>PLN02634 probable pectinesterase
Probab=24.36 E-value=4.2e+02 Score=24.36 Aligned_cols=62 Identities=10% Similarity=-0.026 Sum_probs=35.7
Q ss_pred cCCCceeceeEecccC---------eEEEE-EceeeEEEEeeEEecCCCCCCCcceEecCcccEEEEeeEEecCCCee
Q 042417 53 LNDSTITGIKSVDSRY---------FHINI-LGCYNLKLNDLKITAHADSPNTEGIHIGSSNGSEISHSVIATGDDCV 120 (249)
Q Consensus 53 ~~nv~i~gi~i~ns~~---------~~i~~-~~s~nv~I~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD~i 120 (249)
.+++..++|+|+|+.. -.+-+ ..++...+.+|.|.+..| -+... .-.-..++|+|+..=|=|
T Consensus 148 a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QD-----TL~~~-~gR~yf~~CyIeG~VDFI 219 (359)
T PLN02634 148 ANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQD-----TLCDD-AGRHYFKECYIEGSIDFI 219 (359)
T ss_pred CCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccc-----eeeeC-CCCEEEEeeEEcccccEE
Confidence 4567777788877531 11222 245677888888877433 33322 235677888887544433
No 110
>PLN02916 pectinesterase family protein
Probab=23.81 E-value=6.4e+02 Score=24.29 Aligned_cols=10 Identities=30% Similarity=0.780 Sum_probs=5.1
Q ss_pred EEEeeEEEcc
Q 042417 144 TVRNCTFTGT 153 (249)
Q Consensus 144 ~v~n~~~~~~ 153 (249)
.|.+|.|.+-
T Consensus 308 ~fy~C~f~G~ 317 (502)
T PLN02916 308 VFYRCSFKGY 317 (502)
T ss_pred EEEeeeEecc
Confidence 4555555544
No 111
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=23.27 E-value=5.4e+02 Score=25.01 Aligned_cols=11 Identities=27% Similarity=0.531 Sum_probs=5.8
Q ss_pred EEEEeeEEEcc
Q 042417 143 LTVRNCTFTGT 153 (249)
Q Consensus 143 i~v~n~~~~~~ 153 (249)
..|.||.|.+-
T Consensus 343 ~~fy~C~f~Gy 353 (529)
T PLN02170 343 SVVYRCSVEGY 353 (529)
T ss_pred EEEEeeeEecc
Confidence 34555555554
No 112
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=23.12 E-value=5.7e+02 Score=24.95 Aligned_cols=13 Identities=23% Similarity=0.243 Sum_probs=6.1
Q ss_pred eeeEEEEeeEEec
Q 042417 76 CYNLKLNDLKITA 88 (249)
Q Consensus 76 s~nv~I~n~~i~~ 88 (249)
++...+.+|.|.+
T Consensus 350 ~D~~~fy~C~~~G 362 (548)
T PLN02301 350 ADQAVINRCRIDA 362 (548)
T ss_pred CCcEEEEeeeeee
Confidence 3444444444444
No 113
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=23.08 E-value=4.8e+02 Score=25.55 Aligned_cols=10 Identities=20% Similarity=0.418 Sum_probs=4.9
Q ss_pred EEEeeEEEcc
Q 042417 144 TVRNCTFTGT 153 (249)
Q Consensus 144 ~v~n~~~~~~ 153 (249)
.|.||.|.+-
T Consensus 376 ~fy~c~~~G~ 385 (565)
T PLN02468 376 VFYRCTMDAF 385 (565)
T ss_pred EEEEeEEEec
Confidence 4455555444
No 114
>PLN02197 pectinesterase
Probab=22.34 E-value=7e+02 Score=24.56 Aligned_cols=12 Identities=33% Similarity=0.681 Sum_probs=8.7
Q ss_pred eEEEEeeEEEcc
Q 042417 142 GLTVRNCTFTGT 153 (249)
Q Consensus 142 ni~v~n~~~~~~ 153 (249)
...|.+|.|.+-
T Consensus 393 ~~~fy~C~f~Gy 404 (588)
T PLN02197 393 RAVIFNCRFDGY 404 (588)
T ss_pred cEEEEEeEEEec
Confidence 456788888776
No 115
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=21.75 E-value=5.8e+02 Score=24.80 Aligned_cols=42 Identities=10% Similarity=0.048 Sum_probs=21.4
Q ss_pred cccEEEEeeEEecCCCeeEeCcceEEccCCCCCCCCceEeEEEEeeEEEcc
Q 042417 103 SNGSEISHSVIATGDDCVSLGHGISVGSLGKGINDEEVVGLTVRNCTFTGT 153 (249)
Q Consensus 103 s~nv~I~n~~i~~gDD~i~ig~Gi~iGs~g~~~~~~~v~ni~v~n~~~~~~ 153 (249)
.++...+|..|+|..+.- -+.++++-..+ ....|.||.|.+-
T Consensus 312 ~~~F~a~~it~~Ntag~~-~~QAvAlrv~~--------D~~~f~~C~~~gy 353 (538)
T PLN03043 312 GERFVAVDVTFRNTAGPE-KHQAVALRNNA--------DLSTFYRCSFEGY 353 (538)
T ss_pred CCCEEEEeeEEEECCCCC-CCceEEEEEcC--------CcEEEEeeEEecc
Confidence 367777777777742100 01112221111 1357888888886
No 116
>PF02741 FTR_C: FTR, proximal lobe; InterPro: IPR002770 Formylmethanofuran:tetrahyromethanopterin formyltransferase (Ftr) is involved in C1 metabolism in methanogenic archaea, sulphate-reducing archaea and methylotrophic bacteria. It catalyses the following reversible reaction: N-formylmethanofuran + 5,6,7,8-tetrahydromethanopterin = methanofuran + 5-formyl-5,6,7,8-tetrahydromethanopterin Ftr from the thermophilic methanogen Methanopyrus kandleri (optimum growth temperature 98 degrees C) is a hyperthermophilic enzyme that is absolutely dependent on the presence of lyotropic salts for activity and thermostability. The crystal structure of Ftr, determined to a reveals a homotetramer composed essentially of two dimers. Each subunit is subdivided into two tightly associated lobes both consisting of a predominantly antiparallel beta sheet flanked by alpha helices forming an alpha/beta sandwich structure. The approximate location of the active site was detected in a region close to the dimer interface []. Ftr from the mesophilic methanogen Methanosarcina barkeri and the sulphate-reducing archaeon Archaeoglobus fulgidus have a similar structure []. In the methylotrophic bacterium Methylobacterium extorquens, Ftr interacts with three other polypeptides to form an Ftr/cyclohydrolase complex which catalyses the hydrolysis of formyl-tetrahydromethanopterin to formate during growth on C1 substrates [].; GO: 0016740 transferase activity, 0006730 one-carbon metabolic process; PDB: 1M5S_B 1M5H_E 1FTR_C 2FHJ_B 2FHK_D.
Probab=21.45 E-value=86 Score=24.89 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEecCCeE
Q 042417 18 SKAFETAWREACNWDGIKSAVLVPPGKY 45 (249)
Q Consensus 18 t~Aiq~Ai~~a~~~~g~g~~v~iP~G~y 45 (249)
.+|++..|.++|.. ++.+.|-+|.|
T Consensus 112 ~~Amr~Gi~Aa~~~---~Gv~~IsAGNY 136 (150)
T PF02741_consen 112 AEAMRAGIEAACAV---PGVVRISAGNY 136 (150)
T ss_dssp HHHHHHHHHHHTTS---TTEEEEE---S
T ss_pred HHHHHHHHHHHhcC---CCeEEEecCCc
Confidence 35566677666644 46999999988
No 117
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=21.42 E-value=1e+02 Score=26.41 Aligned_cols=26 Identities=12% Similarity=0.054 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEecCCeE
Q 042417 18 SKAFETAWREACNWDGIKSAVLVPPGKY 45 (249)
Q Consensus 18 t~Aiq~Ai~~a~~~~g~g~~v~iP~G~y 45 (249)
-.++++|.+ ...+.| ...++||+||-
T Consensus 125 ~~~l~~~~~-~l~~~g-~sv~IFPEGTR 150 (245)
T PRK15018 125 HGTIAEVVN-HFKKRR-ISIWMFPEGTR 150 (245)
T ss_pred HHHHHHHHH-HHHhCC-CEEEEECCccC
Confidence 346777763 344444 45789999983
No 118
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=21.39 E-value=5.4e+02 Score=25.36 Aligned_cols=12 Identities=33% Similarity=0.581 Sum_probs=7.4
Q ss_pred eEEEEeeEEEcc
Q 042417 142 GLTVRNCTFTGT 153 (249)
Q Consensus 142 ni~v~n~~~~~~ 153 (249)
...|.||.|.+-
T Consensus 401 r~~f~~c~~~G~ 412 (596)
T PLN02745 401 RSIFLNCRFEGY 412 (596)
T ss_pred cEEEEeeEEeec
Confidence 345666666665
No 119
>PLN02497 probable pectinesterase
Probab=20.97 E-value=5.9e+02 Score=23.05 Aligned_cols=59 Identities=10% Similarity=0.167 Sum_probs=37.7
Q ss_pred ecCCCceeceeEecccCe-----------EEEE-EceeeEEEEeeEEecCCCCCCCcceEecCcccEEEEeeEEecC
Q 042417 52 FLNDSTITGIKSVDSRYF-----------HINI-LGCYNLKLNDLKITAHADSPNTEGIHIGSSNGSEISHSVIATG 116 (249)
Q Consensus 52 ~~~nv~i~gi~i~ns~~~-----------~i~~-~~s~nv~I~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~g 116 (249)
..+++..++|+|+|+..+ .+-+ ...+...+.+|.+.+..|. +... ...-..++|+|+..
T Consensus 113 ~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDT-----Ly~~-~gRqyf~~C~IeG~ 183 (331)
T PLN02497 113 LADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDT-----LWDS-DGRHYFKRCTIQGA 183 (331)
T ss_pred ecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccccc-----eeeC-CCcEEEEeCEEEec
Confidence 477899999999997431 2222 3578899999999986542 2211 12445566666543
No 120
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=20.51 E-value=1.2e+02 Score=28.80 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=27.6
Q ss_pred CCCccchHHHHHHHHHHHhhcCCCCcEEEecCCeEE
Q 042417 11 ADGIKDDSKAFETAWREACNWDGIKSAVLVPPGKYL 46 (249)
Q Consensus 11 gdg~~ddt~Aiq~Ai~~a~~~~g~g~~v~iP~G~y~ 46 (249)
+|+...+.+|||+|++- ..++| -.+|++..|.|+
T Consensus 61 ~D~~~~se~a~~~~lev-~aANg-v~~iv~~~~g~~ 94 (524)
T COG0033 61 GDTHALSEPAIQSALEV-LAANG-VEVIVQGQGGFT 94 (524)
T ss_pred CCcccccHHHHHHHHHH-HHhcC-ceEEEecCCCcc
Confidence 68888899999999954 45677 678888888887
No 121
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=20.40 E-value=7.9e+02 Score=23.80 Aligned_cols=10 Identities=20% Similarity=0.561 Sum_probs=4.8
Q ss_pred EEEeeEEEcc
Q 042417 144 TVRNCTFTGT 153 (249)
Q Consensus 144 ~v~n~~~~~~ 153 (249)
.|.||.|.+-
T Consensus 324 ~fy~C~f~G~ 333 (520)
T PLN02201 324 VFYRCAMRGY 333 (520)
T ss_pred EEEeeeeecc
Confidence 4455555444
No 122
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=20.01 E-value=4.9e+02 Score=26.10 Aligned_cols=11 Identities=45% Similarity=0.836 Sum_probs=8.0
Q ss_pred EEEEeeEEEcc
Q 042417 143 LTVRNCTFTGT 153 (249)
Q Consensus 143 i~v~n~~~~~~ 153 (249)
-+++||.+.++
T Consensus 388 qyy~~C~I~Gt 398 (670)
T PLN02217 388 QFYRDCTISGT 398 (670)
T ss_pred EEEEeCEEEEe
Confidence 46777777776
Done!