Query 042418
Match_columns 121
No_of_seqs 106 out of 174
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 06:01:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042418.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042418hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07059 DUF1336: Protein of u 100.0 5.8E-43 1.3E-47 277.9 7.6 89 1-89 138-227 (227)
2 PLN00188 enhanced disease resi 100.0 2.8E-42 6.2E-47 308.8 9.9 101 1-101 617-717 (719)
3 PF09926 DUF2158: Uncharacteri 37.8 34 0.00074 21.9 2.3 29 3-31 13-41 (53)
4 PF04308 DUF458: Protein of un 36.9 20 0.00043 27.4 1.3 36 30-69 93-128 (144)
5 PF11765 Hyphal_reg_CWP: Hypha 32.6 67 0.0015 27.4 3.9 79 28-107 236-329 (331)
6 PF06348 DUF1059: Protein of u 29.6 8.2 0.00018 24.7 -1.6 25 58-82 8-32 (57)
7 PHA02095 hypothetical protein 25.2 2E+02 0.0044 20.2 4.6 46 12-78 9-57 (84)
8 PF09272 Hepsin-SRCR: Hepsin, 24.8 27 0.00059 25.8 0.3 35 71-106 72-108 (110)
9 KOG1909 Ran GTPase-activating 24.5 44 0.00095 29.5 1.5 66 29-94 29-103 (382)
10 PF08918 PhoQ_Sensor: PhoQ Sen 23.7 22 0.00047 28.4 -0.5 25 20-44 98-122 (180)
11 COG5584 Predicted small secret 23.1 44 0.00096 24.5 1.1 9 1-9 49-57 (103)
12 PF03622 IBV_3B: IBV 3B protei 22.7 91 0.002 21.0 2.4 16 22-37 37-52 (64)
13 PF15540 Toxin_62: Putative to 21.9 67 0.0014 23.9 1.8 25 17-42 49-73 (113)
No 1
>PF07059 DUF1336: Protein of unknown function (DUF1336); InterPro: IPR009769 This entry represents the C terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function.
Probab=100.00 E-value=5.8e-43 Score=277.93 Aligned_cols=89 Identities=49% Similarity=0.882 Sum_probs=87.6
Q ss_pred CccceeEEecc-CCceeEeeceeeeeEeeCCCeEEEEEEecchHHHHHHHhhhhccceeEEEeeEEEeecCCCCccccce
Q 042418 1 MQGSWIVRHSV-GSTTCLLGKAVDCNYLHGPKYLEIDVDIGSSTVANGVLGLVNGVITTLVVDMAFLVQANTTDELPERL 79 (121)
Q Consensus 1 ~~GpwiVr~aV-G~kP~LlGk~l~~~Y~~G~~YlEiDvDI~sS~iAr~il~l~~g~~k~lvvD~gFvIEG~~eeELPE~L 79 (121)
++||||||++| |+|||||||+++|+||+|+||+|+|||||||++||+++++|+||+|+|+|||||+|||+++|||||||
T Consensus 138 v~gpwivr~~v~~~kP~lig~~~~~~y~~g~~y~E~dvdi~ss~~a~~~~~~~~~~~~~lvvd~gf~ieg~~~~ELPE~l 217 (227)
T PF07059_consen 138 VNGPWIVRKAVYNGKPVLIGKKLQHRYFRGPNYLEIDVDIHSSYIARKVLHLVRGYLKKLVVDMGFVIEGQTEEELPERL 217 (227)
T ss_pred cCCchhhhhhhcCCCceeecCccceEEeeCCCeEEEEEEeccHHHHHHHHHHHHhhhceEEEEEEEEecCCChhhCchhe
Confidence 57999999999 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eceEEeCccc
Q 042418 80 IGVVRVSSLL 89 (121)
Q Consensus 80 LG~vRl~~lD 89 (121)
|||+|++|+|
T Consensus 218 Lg~~Rl~~id 227 (227)
T PF07059_consen 218 LGCVRLNHID 227 (227)
T ss_pred EeEEEeeecC
Confidence 9999999998
No 2
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=100.00 E-value=2.8e-42 Score=308.83 Aligned_cols=101 Identities=78% Similarity=1.144 Sum_probs=97.8
Q ss_pred CccceeEEeccCCceeEeeceeeeeEeeCCCeEEEEEEecchHHHHHHHhhhhccceeEEEeeEEEeecCCCCcccccee
Q 042418 1 MQGSWIVRHSVGSTTCLLGKAVDCNYLHGPKYLEIDVDIGSSTVANGVLGLVNGVITTLVVDMAFLVQANTTDELPERLI 80 (121)
Q Consensus 1 ~~GpwiVr~aVG~kP~LlGk~l~~~Y~~G~~YlEiDvDI~sS~iAr~il~l~~g~~k~lvvD~gFvIEG~~eeELPE~LL 80 (121)
+|||||||+|||+||||+||+|+|+||+|+|||||||||+||++|++++++++||+++|+|||||+|||+++||||||||
T Consensus 617 v~GpWiVk~aVG~~p~llGk~l~~~Y~~g~nylEvdvDi~ss~va~~v~~l~~g~~~~lvvD~af~ie~~~~eELPE~ll 696 (719)
T PLN00188 617 PKGSWIVRQSVGSTPCLLGKAVDCNYIRGPKYLEIDVDIGSSTVANGVLGLVIGVITTLVVDMAFLVQANTYEELPERLI 696 (719)
T ss_pred cCCceEEEeccCCcceEeeeecceeEecCCCeEEEEEeeccHHHHHHHHHHHHhhhhheEEEEEEEEecCChhhCchhhe
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeCccccCccccCCCCCC
Q 042418 81 GVVRVSSLLLSQSWNQRHHHD 101 (121)
Q Consensus 81 G~vRl~~lD~~~A~~~~~~~~ 101 (121)
||+|++++|+++|+.+.+.++
T Consensus 697 G~~Rl~~i~~~~A~~~~~~~~ 717 (719)
T PLN00188 697 GAVRVSHVELSSAIVPKLDPD 717 (719)
T ss_pred eeEEecccchhhccccCCCCC
Confidence 999999999999998876544
No 3
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=37.75 E-value=34 Score=21.89 Aligned_cols=29 Identities=24% Similarity=0.496 Sum_probs=24.5
Q ss_pred cceeEEeccCCceeEeeceeeeeEeeCCC
Q 042418 3 GSWIVRHSVGSTTCLLGKAVDCNYLHGPK 31 (121)
Q Consensus 3 GpwiVr~aVG~kP~LlGk~l~~~Y~~G~~ 31 (121)
||.|.=..||..+...+..+.|.+|.+.+
T Consensus 13 Gp~MTV~~v~~~~~~~~~~v~C~WFd~~~ 41 (53)
T PF09926_consen 13 GPRMTVTEVGPNAGASGGWVECQWFDGHG 41 (53)
T ss_pred CCCeEEEEccccccCCCCeEEEEeCCCCC
Confidence 88888888888877888899999998754
No 4
>PF04308 DUF458: Protein of unknown function (DUF458) ; InterPro: IPR007405 This entry is represented by Bacteriophage KVP40, Orf299. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of uncharacterised, mainly bacterial, proteins. While the functions of these proteins are unknown, an analysis has suggested that they may form a novel family within the RNASE H-like superfamily []. These proteins appear to contain all the core secondary structural elements of the RNase H-like fold and share several conserved, possible active site, residues. It was suggested, therefore, that they function as nucleases. From the taxonomic distibution of these proteins it was further inferred that they may play a role in DNA repair under stressful conditions.
Probab=36.92 E-value=20 Score=27.43 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=25.0
Q ss_pred CCeEEEEEEecchHHHHHHHhhhhccceeEEEeeEEEeec
Q 042418 30 PKYLEIDVDIGSSTVANGVLGLVNGVITTLVVDMAFLVQA 69 (121)
Q Consensus 30 ~~YlEiDvDI~sS~iAr~il~l~~g~~k~lvvD~gFvIEG 69 (121)
.-=+||.+||+...-.+..+.-+-||+.. |||.-.-
T Consensus 93 ~~~~EiHiDIg~~g~T~~~i~E~vG~v~~----~G~~~ki 128 (144)
T PF04308_consen 93 DVDLEIHIDIGTNGKTRELIKEVVGYVEG----MGFEAKI 128 (144)
T ss_pred CccEEEEEEcCCCCchHHHHHHHHHHHHH----CCceEEE
Confidence 34589999999976667677666676665 5655443
No 5
>PF11765 Hyphal_reg_CWP: Hyphally regulated cell wall protein N-terminal; InterPro: IPR021031 This entry represents a conserved domain found at the N terminus of a number of fungal proteins. These proteins are largely annotated as being hyphally-regulated cell wall proteins that are induced in response to hyphal development. Several are listed with a specific enzyme activity 3.2.1.18 from EC, though it is not clear if there is any experimental evidence for this.
Probab=32.56 E-value=67 Score=27.39 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=53.7
Q ss_pred eCCCeEEEEEEecc-------hHHH-HHHHhhhhccceeEEEeeE-------EEeecCCCCccccceeceEEeCccccCc
Q 042418 28 HGPKYLEIDVDIGS-------STVA-NGVLGLVNGVITTLVVDMA-------FLVQANTTDELPERLIGVVRVSSLLLSQ 92 (121)
Q Consensus 28 ~G~~YlEiDvDI~s-------S~iA-r~il~l~~g~~k~lvvD~g-------FvIEG~~eeELPE~LLG~vRl~~lD~~~ 92 (121)
-.-|-+-++.-+-+ |+=+ .+||-+-.--.-.--+|+| |-|....-.-+|.-.+|+++-+..=|+.
T Consensus 236 GngNkIgl~~pl~~~~~~~~~sYd~~tGILTl~~~~~~~~~F~IG~GYd~s~F~i~td~~~G~~~~~~gav~Y~gp~P~~ 315 (331)
T PF11765_consen 236 GNGNKIGLTIPLVSNPGISAWSYDSSTGILTLRGNGLLSQNFDIGTGYDSSKFSIVTDSSSGLPSVINGAVQYNGPPPNP 315 (331)
T ss_pred CCCCEEEEeeecccCCCCCcceEcCCCeEEEEEecCcEEEEEEeECCcCcCeEEEEecCCcceeeeecCeEEECCCCcCC
Confidence 33477776665432 3323 3444443122234456665 6788878888999999999999999998
Q ss_pred cccCCCCCCccccCc
Q 042418 93 SWNQRHHHDCGFISP 107 (121)
Q Consensus 93 A~~~~~~~~~~~~~~ 107 (121)
..+-.| |.|+++.+
T Consensus 316 ~~Ps~C-~~C~~~P~ 329 (331)
T PF11765_consen 316 SRPSVC-QPCKPIPS 329 (331)
T ss_pred CCCccc-cCCCCCCC
Confidence 888888 79998753
No 6
>PF06348 DUF1059: Protein of unknown function (DUF1059); InterPro: IPR009409 This entry consists of short hypothetical archaeal and bacterial proteins of unknown function.
Probab=29.58 E-value=8.2 Score=24.74 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=19.9
Q ss_pred eEEEeeEEEeecCCCCccccceece
Q 042418 58 TLVVDMAFLVQANTTDELPERLIGV 82 (121)
Q Consensus 58 ~lvvD~gFvIEG~~eeELPE~LLG~ 82 (121)
.+..|-+|.+.|.+++||-+++---
T Consensus 8 d~g~~C~~~~~a~tedEll~~~~~H 32 (57)
T PF06348_consen 8 DVGPDCGFVIRAETEDELLEAVVEH 32 (57)
T ss_pred ccCCCCCeEEeeCCHHHHHHHHHHH
Confidence 3456788999999999998887543
No 7
>PHA02095 hypothetical protein
Probab=25.22 E-value=2e+02 Score=20.19 Aligned_cols=46 Identities=24% Similarity=0.382 Sum_probs=30.7
Q ss_pred CCceeEeeceeeeeEeeCC---CeEEEEEEecchHHHHHHHhhhhccceeEEEeeEEEeecCCCCccccc
Q 042418 12 GSTTCLLGKAVDCNYLHGP---KYLEIDVDIGSSTVANGVLGLVNGVITTLVVDMAFLVQANTTDELPER 78 (121)
Q Consensus 12 G~kP~LlGk~l~~~Y~~G~---~YlEiDvDI~sS~iAr~il~l~~g~~k~lvvD~gFvIEG~~eeELPE~ 78 (121)
|++|.|+.- .+++.|. .|+| .|...---||=-+.|||..+.-+||-
T Consensus 9 ~~~p~ll~~---~s~~~g~iq~~yv~------------------ng~wefsrvdgilciegd~~~pm~~f 57 (84)
T PHA02095 9 GTNPVLLNF---FSMTEGVIQNGYVE------------------NGSWEFSRVDGILCIEGDKEHPMPDF 57 (84)
T ss_pred CCCceEEEE---EEeecceeeeeEEe------------------cCcEEEEeccEEEEecCCCCCCchhh
Confidence 458999863 4555553 5654 23333344677788999999999984
No 8
>PF09272 Hepsin-SRCR: Hepsin, SRCR; InterPro: IPR015352 This entry represents the extracellular domain of the serine protease hepsin. The domain is formed primarily by three elements of regular secondary structure: a 12-residue alpha helix, a twisted five-stranded antiparallel beta sheet, and a second, two-stranded, antiparallel sheet. The two beta-sheets lie at roughly right angles to each other, with the helix nestled between the two, adopting an SRCR fold. The exact function of this domain has not been identified, though it probably may serve to orient the protease domain or place it in the vicinity of its substrate []. ; GO: 0004252 serine-type endopeptidase activity, 0070008 serine-type exopeptidase activity; PDB: 3T2N_B 1Z8G_A 1P57_A 1O5E_L 1O5F_L.
Probab=24.83 E-value=27 Score=25.85 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=12.9
Q ss_pred CCCccc--cceeceEEeCccccCccccCCCCCCccccC
Q 042418 71 TTDELP--ERLIGVVRVSSLLLSQSWNQRHHHDCGFIS 106 (121)
Q Consensus 71 ~eeELP--E~LLG~vRl~~lD~~~A~~~~~~~~~~~~~ 106 (121)
++.+|| -+|+-..-++.-.=..-...-| ||||++.
T Consensus 72 ~~~~L~~a~~L~~v~~vCdCp~G~fLat~C-QDCGRRk 108 (110)
T PF09272_consen 72 DEGRLPYARRLLEVLSVCDCPRGRFLATIC-QDCGRRK 108 (110)
T ss_dssp -TTTGGG-S-GGGGEEEE--TT-EEEEEEE----S---
T ss_pred CcccCcHhHhhhhheeeeeCCCCceeehhh-hhhCccc
Confidence 456777 6666555554443333333444 9999874
No 9
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=24.47 E-value=44 Score=29.49 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=48.4
Q ss_pred CCCeEEEEEEecchH--HHHHHHhhhhccceeEEEeeEEEeecCCCCccccc-------eeceEEeCccccCccc
Q 042418 29 GPKYLEIDVDIGSST--VANGVLGLVNGVITTLVVDMAFLVQANTTDELPER-------LIGVVRVSSLLLSQSW 94 (121)
Q Consensus 29 G~~YlEiDvDI~sS~--iAr~il~l~~g~~k~lvvD~gFvIEG~~eeELPE~-------LLG~vRl~~lD~~~A~ 94 (121)
.+.|-++|++=.+.. .||.+-......-.--.+|+.=..-|+-.+|+||. |+||-++..+|+++-.
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 458899999877743 44544444444444456788888899999999986 5788899999998743
No 10
>PF08918 PhoQ_Sensor: PhoQ Sensor; InterPro: IPR015014 The PhoQ Sensor is required for the virulence of various Gram-negative bacteria by allowing interaction of PhoPQ with the intracellular membrane, resulting in remodelling of the bacterial cell surface and subsequent bacterial resistance to host antimicrobial peptides. The domain contains a major flat acidic surface, which binds to at least 3 calcium ions, neutralising the domain's negative charge and allowing interaction with the negatively charged membrane []. ; GO: 0004673 protein histidine kinase activity, 0005524 ATP binding, 0046872 metal ion binding, 0000160 two-component signal transduction system (phosphorelay), 0018106 peptidyl-histidine phosphorylation, 0016020 membrane; PDB: 1YAX_D 3BQA_B 3BQ8_B.
Probab=23.67 E-value=22 Score=28.37 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=19.6
Q ss_pred ceeeeeEeeCCCeEEEEEEecchHH
Q 042418 20 KAVDCNYLHGPKYLEIDVDIGSSTV 44 (121)
Q Consensus 20 k~l~~~Y~~G~~YlEiDvDI~sS~i 44 (121)
|+++-.+-+.++|.|+|.|+..|..
T Consensus 98 ~~I~~~WL~k~gf~Eidtd~~~s~~ 122 (180)
T PF08918_consen 98 KRIQPEWLKKNGFYEIDTDVDTSSA 122 (180)
T ss_dssp CCS-GGGGGSSEEEEEEEEHHHHHC
T ss_pred HhcCHHHccCCCceEEecCcchHHH
Confidence 5566667778899999999998764
No 11
>COG5584 Predicted small secreted protein [Function unknown]
Probab=23.14 E-value=44 Score=24.48 Aligned_cols=9 Identities=56% Similarity=1.221 Sum_probs=7.6
Q ss_pred CccceeEEe
Q 042418 1 MQGSWIVRH 9 (121)
Q Consensus 1 ~~GpwiVr~ 9 (121)
|+|+||+-+
T Consensus 49 I~GSwI~~~ 57 (103)
T COG5584 49 IKGSWIVYE 57 (103)
T ss_pred cceeEEEEe
Confidence 689999974
No 12
>PF03622 IBV_3B: IBV 3B protein ; InterPro: IPR005295 These proteins are the product of ORF 3B from Infectious bronchitis virus). Currently, the function of this protein remains unknown [].
Probab=22.72 E-value=91 Score=21.05 Aligned_cols=16 Identities=25% Similarity=0.588 Sum_probs=13.4
Q ss_pred eeeeEeeCCCeEEEEE
Q 042418 22 VDCNYLHGPKYLEIDV 37 (121)
Q Consensus 22 l~~~Y~~G~~YlEiDv 37 (121)
..+-||||-+|.|++=
T Consensus 37 FE~cyyrgGsfwEieS 52 (64)
T PF03622_consen 37 FEVCYYRGGSFWEIES 52 (64)
T ss_pred eeEEEEecCcEEEeec
Confidence 4677999999999873
No 13
>PF15540 Toxin_62: Putative toxin 62
Probab=21.85 E-value=67 Score=23.91 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=20.8
Q ss_pred EeeceeeeeEeeCCCeEEEEEEecch
Q 042418 17 LLGKAVDCNYLHGPKYLEIDVDIGSS 42 (121)
Q Consensus 17 LlGk~l~~~Y~~G~~YlEiDvDI~sS 42 (121)
.-||....+| +|||=-||++|+..-
T Consensus 49 ~~gks~pvE~-~gpNGA~Vn~D~p~~ 73 (113)
T PF15540_consen 49 KNGKSFPVEW-RGPNGAEVNIDIPHL 73 (113)
T ss_pred CCCccceEEE-eCCCCceeecccccc
Confidence 4577777887 999999999999863
Done!