Query 042418
Match_columns 121
No_of_seqs 106 out of 174
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 10:04:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042418.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042418hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4day_C Fanconi anemia group M 53.1 3.8 0.00013 24.2 0.5 20 56-75 13-32 (37)
2 3bqa_A Sensor protein PHOQ; hi 22.4 13 0.00044 27.8 -0.8 25 20-44 65-89 (148)
3 2zou_A Spondin-1; beta-sandwic 17.5 63 0.0022 22.9 2.0 24 63-86 54-80 (149)
4 3ulj_A LIN28B, DNA-binding pro 16.9 78 0.0027 21.0 2.2 35 12-46 1-50 (90)
5 3hm0_A Probable thioesterase; 15.0 1.6E+02 0.0054 20.4 3.5 60 14-83 103-165 (167)
6 3coo_A Spondin-1; reelin-N dom 13.0 62 0.0021 24.1 0.9 24 63-86 69-95 (180)
7 3tig_A TTL protein; ATP-grAsp, 12.9 1.1E+02 0.0039 25.2 2.6 24 3-27 181-207 (380)
8 2dgb_A Hypothetical protein PU 12.9 87 0.003 20.1 1.5 25 28-52 39-64 (84)
9 4akm_A Lysosome-associated mem 12.3 1.1E+02 0.0039 21.6 2.2 17 2-20 4-20 (166)
10 4dov_A ORC1, origin recognitio 12.2 2.6E+02 0.009 20.7 4.2 35 75-115 117-151 (163)
No 1
>4day_C Fanconi anemia group M protein; OB fold, protein binding-hydrolase complex; 3.30A {Homo sapiens}
Probab=53.13 E-value=3.8 Score=24.17 Aligned_cols=20 Identities=15% Similarity=0.350 Sum_probs=15.7
Q ss_pred ceeEEEeeEEEeecCCCCcc
Q 042418 56 ITTLVVDMAFLVQANTTDEL 75 (121)
Q Consensus 56 ~k~lvvD~gFvIEG~~eeEL 75 (121)
+=++..|+||.++..++|.+
T Consensus 13 LFSVnFDLGf~~~dSDde~~ 32 (37)
T 4day_C 13 LFSVTFDLGFCSPDSDDEIL 32 (37)
T ss_pred eEEEEeccccccCCcchhhh
Confidence 44789999999998776654
No 2
>3bqa_A Sensor protein PHOQ; histidine kinase sensor domain, ATP-binding, inner membrane, magnesium, membrane, metal-binding, nucleotide-binding; 2.00A {Escherichia coli} PDB: 3bq8_A 1yax_A
Probab=22.44 E-value=13 Score=27.77 Aligned_cols=25 Identities=20% Similarity=0.531 Sum_probs=19.1
Q ss_pred ceeeeeEeeCCCeEEEEEEecchHH
Q 042418 20 KAVDCNYLHGPKYLEIDVDIGSSTV 44 (121)
Q Consensus 20 k~l~~~Y~~G~~YlEiDvDI~sS~i 44 (121)
|+++-.+-..++|+|||.|+..|..
T Consensus 65 ~~I~~eWLkk~gf~Eidtd~~~s~~ 89 (148)
T 3bqa_A 65 KMIQPDWLKSNGFHEIEADVNDTSL 89 (148)
T ss_dssp HHSCGGGSSSCEEEEEEEEHHHHHH
T ss_pred hhcCHHHhcCCCcEEEecCcchHHH
Confidence 4455556667899999999998763
No 3
>2zou_A Spondin-1; beta-sandwich, extracellular protein, cell adhesion, extrace matrix, glycoprotein, secreted; 1.45A {Homo sapiens}
Probab=17.46 E-value=63 Score=22.91 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=19.2
Q ss_pred eEEEeecCCCCcc---ccceeceEEeC
Q 042418 63 MAFLVQANTTDEL---PERLIGVVRVS 86 (121)
Q Consensus 63 ~gFvIEG~~eeEL---PE~LLG~vRl~ 86 (121)
.||+||++.++.. +...+|...+.
T Consensus 54 ~GFllqAr~~~~~~~~~~~~vG~F~~~ 80 (149)
T 2zou_A 54 RGFTLIALRENREGDKEEDHAGTFQII 80 (149)
T ss_dssp SEEEEEEEETTCCSCSGGGBCSEEEES
T ss_pred EEEEEEEEecCCccCCCCcceEEEEeC
Confidence 6999999887764 56789999875
No 4
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=16.87 E-value=78 Score=21.03 Aligned_cols=35 Identities=23% Similarity=0.411 Sum_probs=23.8
Q ss_pred CCceeEeeceeeeeEe---eCCCeEEE------------EEEecchHHHH
Q 042418 12 GSTTCLLGKAVDCNYL---HGPKYLEI------------DVDIGSSTVAN 46 (121)
Q Consensus 12 G~kP~LlGk~l~~~Y~---~G~~YlEi------------DvDI~sS~iAr 46 (121)
|+.|-++-..-++.|| +|.+|++. ||=+|.|.|..
T Consensus 1 g~~p~~~r~tG~VKWFn~~KGfGFI~~~~~~~~p~dgg~DvFVH~s~i~~ 50 (90)
T 3ulj_A 1 GSDPQVLRGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYM 50 (90)
T ss_dssp ---CCCEEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCC
T ss_pred CCCccccccceEEEEeeCCCCeEEeEecCcCcCCCCCCccEEEEeehhcc
Confidence 4567777666788998 46688874 67789888743
No 5
>3hm0_A Probable thioesterase; niaid, ssgcid, decode, UW, SBRI, infectious disease, rhizobiales, bacteremia, endocarditis, bacillary angiomatosis; 2.50A {Bartonella henselae}
Probab=15.00 E-value=1.6e+02 Score=20.35 Aligned_cols=60 Identities=10% Similarity=0.117 Sum_probs=24.7
Q ss_pred ceeEeeceeeeeEe---eCCCeEEEEEEecchHHHHHHHhhhhccceeEEEeeEEEeecCCCCccccceeceE
Q 042418 14 TTCLLGKAVDCNYL---HGPKYLEIDVDIGSSTVANGVLGLVNGVITTLVVDMAFLVQANTTDELPERLIGVV 83 (121)
Q Consensus 14 kP~LlGk~l~~~Y~---~G~~YlEiDvDI~sS~iAr~il~l~~g~~k~lvvD~gFvIEG~~eeELPE~LLG~v 83 (121)
+|+..|..++.+-. -|...+.++..|.+. .--.+.+.+.-+.+| .++ .+-.+|+.+.-.+
T Consensus 103 ~p~~~gd~i~V~t~v~~~~~~s~~~~~~i~~~-----g~~~a~a~~~~V~vD----~~~-rp~~iP~~~r~~l 165 (167)
T 3hm0_A 103 RPAQIDNLLTIKTRISRLQGARFFMEQYILHG-----ESMLVTAKVEIALIN----EEG-KPRRLPKELFSTI 165 (167)
T ss_dssp SCCCTTCEEEEEEEEEEECSSEEEEEEEEEET-----TEEEEEEEEEEEEEE----TTS-CBCCCCC------
T ss_pred cCCCCCCEEEEEEEEEEeCCeEEEEEEEEEEC-----CEEEEEEEEEEEEEC----CCC-CEecCCHHHHHHh
Confidence 45555555544422 234445555444431 112344444444444 245 5666666665443
No 6
>3coo_A Spondin-1; reelin-N domain, cell adhesion, extracellular MAT glycoprotein, secreted; 2.00A {Homo sapiens} PDB: 2zot_A
Probab=13.03 E-value=62 Score=24.08 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=19.2
Q ss_pred eEEEeecCCCCcc---ccceeceEEeC
Q 042418 63 MAFLVQANTTDEL---PERLIGVVRVS 86 (121)
Q Consensus 63 ~gFvIEG~~eeEL---PE~LLG~vRl~ 86 (121)
.||+||++.++.. +...+|..++.
T Consensus 69 ~GFlLqAr~~~~~~~~~~~~vGtF~~~ 95 (180)
T 3coo_A 69 RGFTLIALRENREGDKEEDHAGTFQII 95 (180)
T ss_dssp SCCEEEEEETTCCSSSGGGBCSEEECS
T ss_pred eEEEEEEEcCCCCccCCCCceeEEEec
Confidence 5899999987764 56789999864
No 7
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=12.86 E-value=1.1e+02 Score=25.19 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=18.6
Q ss_pred cceeEEeccCCceeEe---eceeeeeEe
Q 042418 3 GSWIVRHSVGSTTCLL---GKAVDCNYL 27 (121)
Q Consensus 3 GpwiVr~aVG~kP~Ll---Gk~l~~~Y~ 27 (121)
.+|||.+-+ .+|.|+ |+|.+.+.|
T Consensus 181 ~~~VvQkYI-~~PlLi~~~grKFDlR~Y 207 (380)
T 3tig_A 181 QVHVIQKYL-ESPLLLEPGHRKFDIRSW 207 (380)
T ss_dssp SCEEEEECC-SSBCCBTTTTBCEEEEEE
T ss_pred CcEEEEecc-cCceeecCCCceeEEEEE
Confidence 467887777 479988 788888865
No 8
>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
Probab=12.86 E-value=87 Score=20.14 Aligned_cols=25 Identities=16% Similarity=-0.028 Sum_probs=14.8
Q ss_pred eCCCeEEEEEEecchHH-HHHHHhhh
Q 042418 28 HGPKYLEIDVDIGSSTV-ANGVLGLV 52 (121)
Q Consensus 28 ~G~~YlEiDvDI~sS~i-Ar~il~l~ 52 (121)
|--.|||+++|..+..- .+.+-.+|
T Consensus 39 R~gK~~~l~~~~~~~~~a~~~v~~~~ 64 (84)
T 2dgb_A 39 RVGKVLEIVFPAENLLEAEEKAKAMG 64 (84)
T ss_dssp EEEEEEEEEEECSSHHHHHHHHHHHH
T ss_pred EEEEEEEEEecCCCHHHHHHHHHHHH
Confidence 34578999999654333 23344444
No 9
>4akm_A Lysosome-associated membrane glycoprotein 3; membrane protein, glycosylation, beta prism; HET: NAG; 2.69A {Homo sapiens}
Probab=12.28 E-value=1.1e+02 Score=21.55 Aligned_cols=17 Identities=29% Similarity=0.601 Sum_probs=14.1
Q ss_pred ccceeEEeccCCceeEeec
Q 042418 2 QGSWIVRHSVGSTTCLLGK 20 (121)
Q Consensus 2 ~GpwiVr~aVG~kP~LlGk 20 (121)
.|.|.|+- |+++||+-+
T Consensus 4 tG~y~V~~--~n~tCila~ 20 (166)
T 4akm_A 4 TGIYQVLN--GSRLCIKAE 20 (166)
T ss_dssp CEEEEEEE--TTEEEEEEE
T ss_pred eeEEEEEC--CCcChhhhe
Confidence 48999988 678999875
No 10
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=12.24 E-value=2.6e+02 Score=20.73 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=26.6
Q ss_pred cccceeceEEeCccccCccccCCCCCCccccCceeEEEEEe
Q 042418 75 LPERLIGVVRVSSLLLSQSWNQRHHHDCGFISPQLFFFLIE 115 (121)
Q Consensus 75 LPE~LLG~vRl~~lD~~~A~~~~~~~~~~~~~~~~~~~~~~ 115 (121)
.=|.++|-|++..+.+....+.+ -.+.+|||--..
T Consensus 117 ~aeTIi~~c~V~~~~~~e~~p~~------~~~e~t~Fvkls 151 (163)
T 4dov_A 117 NVETIIGPVQVVALAPEEVIPVD------QKSEETLFVKLS 151 (163)
T ss_dssp EGGGEEEEEEEEECCTTCCCCSS------CCCCSEEEEEEE
T ss_pred cHHHeeeceEEEEcCCccccCCC------cccceEEEEEEE
Confidence 56889999999888888877764 346679987554
Done!