Query 042418
Match_columns 121
No_of_seqs 106 out of 174
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 10:04:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042418.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042418hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vpma_ d.38.1.1 (A:) Acyl-CoA 22.9 57 0.0041 21.3 4.5 39 4-42 51-96 (155)
2 d2gvha2 d.38.1.1 (A:147-262) P 20.4 18 0.0013 22.7 1.3 35 7-41 45-86 (116)
3 d1cr2a_ c.37.1.11 (A:) Gene 4 13.9 34 0.0024 23.2 1.5 50 61-110 226-277 (277)
4 d1y7ua1 d.38.1.1 (A:8-171) Acy 11.8 70 0.0051 21.0 2.7 37 6-42 52-95 (164)
5 d1h3ga1 b.1.18.2 (A:3-95) Cycl 11.6 75 0.0055 19.7 2.6 20 26-45 49-68 (93)
6 d2fsra1 d.108.1.1 (A:4-167) Pr 11.2 35 0.0025 20.6 0.8 72 3-79 61-158 (164)
7 d2gy9s1 d.28.1.1 (S:2-80) Ribo 11.1 43 0.0031 20.5 1.2 21 15-37 40-60 (79)
8 d1p5dx4 d.129.2.1 (X:368-463) 10.0 66 0.0048 19.5 1.8 14 5-18 50-63 (96)
9 d2dita1 d.58.7.1 (A:8-106) HIV 9.1 53 0.0039 19.6 1.1 15 16-30 81-95 (99)
10 d1xxaa_ d.74.2.1 (A:) C-termin 8.9 63 0.0046 19.0 1.3 11 73-83 34-44 (71)
No 1
>d1vpma_ d.38.1.1 (A:) Acyl-CoA hydrolase BH0798 {Bacillus halodurans [TaxId: 86665]}
Probab=22.92 E-value=57 Score=21.28 Aligned_cols=39 Identities=26% Similarity=0.355 Sum_probs=31.2
Q ss_pred ceeEEeccCC----ceeEeeceeeeeE---eeCCCeEEEEEEecch
Q 042418 4 SWIVRHSVGS----TTCLLGKAVDCNY---LHGPKYLEIDVDIGSS 42 (121)
Q Consensus 4 pwiVr~aVG~----kP~LlGk~l~~~Y---~~G~~YlEiDvDI~sS 42 (121)
..+|-.+|.+ +|+-+|..+.++- |.|...+||.+++.+.
T Consensus 51 ~~~vt~~vd~i~F~~Pv~~Gd~l~~~a~V~~~G~sS~~V~v~v~~~ 96 (155)
T d1vpma_ 51 SAVVTASIDSVDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHSN 96 (155)
T ss_dssp SEEEEEEECCCCCCSCCBTTEEEEEEEEEEEECSSEEEEEEEEEEE
T ss_pred CCceEEEEeeEEEeecccCCcEEEEEEEEEEeccceEEEEEEEEEe
Confidence 4567777775 7999999888873 5789999999999764
No 2
>d2gvha2 d.38.1.1 (A:147-262) Probable acyl-CoA hydrolase AGR_L_2016 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=20.42 E-value=18 Score=22.68 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=25.4
Q ss_pred EEeccCC----ceeEeeceeeee---EeeCCCeEEEEEEecc
Q 042418 7 VRHSVGS----TTCLLGKAVDCN---YLHGPKYLEIDVDIGS 41 (121)
Q Consensus 7 Vr~aVG~----kP~LlGk~l~~~---Y~~G~~YlEiDvDI~s 41 (121)
|-.++.+ +|+-+|..+.++ -+.|...+|+.+++-.
T Consensus 45 vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~sS~~V~v~v~~ 86 (116)
T d2gvha2 45 VLASSERIDFARAIEIGEIVEAQAHVERVGRSSMSIQTKLWS 86 (116)
T ss_dssp EEEEECCEEBSSCCBTTEEEEEEEEEEEECSSEEEEEEEEEE
T ss_pred eEEEEeEEEEEeeecCCCEEEEEEEEEEccceeEEEEEEEEE
Confidence 4445543 788888888776 3468899999988864
No 3
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}
Probab=13.85 E-value=34 Score=23.21 Aligned_cols=50 Identities=10% Similarity=0.261 Sum_probs=26.6
Q ss_pred EeeEEEeecCCCCccccce-eceEEeCc-cccCccccCCCCCCccccCceeE
Q 042418 61 VDMAFLVQANTTDELPERL-IGVVRVSS-LLLSQSWNQRHHHDCGFISPQLF 110 (121)
Q Consensus 61 vD~gFvIEG~~eeELPE~L-LG~vRl~~-lD~~~A~~~~~~~~~~~~~~~~~ 110 (121)
.|+.+.|+-+.+++-|..+ |-.+.-.+ =....+..+..++++++++|+.|
T Consensus 226 ad~vl~l~r~~~~~~~~~~~l~v~KnR~~G~~G~~~~l~~d~~tgr~~~~~~ 277 (277)
T d1cr2a_ 226 SDTIIALERNQQGDMPNLVLVRILKCRFTGDTGIAGYMEYNKETGWLEPSSY 277 (277)
T ss_dssp CSEEEEEECC------CEEEEEEEEETTTCCCEEEEEEEECTTTCCEEECCC
T ss_pred CcEEEEEEecCccCCCCeEEEEEEccCCCCCCCCEEEEEEeCCCCeEcCCCC
Confidence 6888888877777766654 33333321 12334445666788999888754
No 4
>d1y7ua1 d.38.1.1 (A:8-171) Acyl-coa hydrolase BC2038 {Bacillus cereus [TaxId: 1396]}
Probab=11.84 E-value=70 Score=21.05 Aligned_cols=37 Identities=19% Similarity=0.150 Sum_probs=27.9
Q ss_pred eEEeccCC----ceeEeeceeeee---EeeCCCeEEEEEEecch
Q 042418 6 IVRHSVGS----TTCLLGKAVDCN---YLHGPKYLEIDVDIGSS 42 (121)
Q Consensus 6 iVr~aVG~----kP~LlGk~l~~~---Y~~G~~YlEiDvDI~sS 42 (121)
+|-.++.+ +|+-+|..+.++ -|.|...+|+.|++-+.
T Consensus 52 ~vtasvd~i~F~~Pv~~Gd~l~~~a~V~~~G~tS~~V~v~v~~~ 95 (164)
T d1y7ua1 52 CVTASMDWVDFLHPVRSSDCVSYESFVIWTGRTSMEVFVKVVSE 95 (164)
T ss_dssp EEEEEECCCCCCSCCCTTCEEEEEEEEEEECSSEEEEEEEEEEE
T ss_pred CceEEEeeEEEeeccCCCceEEEEEEEeecCCceEEEEEEEEEE
Confidence 34456654 799999887776 35789999999999753
No 5
>d1h3ga1 b.1.18.2 (A:3-95) Cyclomaltodextrinase, N-terminal domain {Flavobacterium sp. 92 [TaxId: 197856]}
Probab=11.56 E-value=75 Score=19.69 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=15.0
Q ss_pred EeeCCCeEEEEEEecchHHH
Q 042418 26 YLHGPKYLEIDVDIGSSTVA 45 (121)
Q Consensus 26 Y~~G~~YlEiDvDI~sS~iA 45 (121)
-...+||+=||+||+..+.|
T Consensus 49 ~~eNpNYLFv~L~i~~~a~~ 68 (93)
T d1h3ga1 49 RVPNANYLFVDLEIGPEAQP 68 (93)
T ss_dssp ECSSTTEEEEEEEECTTCCS
T ss_pred cCCCCCEEEEEEEeCCCCCC
Confidence 34568999999999755444
No 6
>d2fsra1 d.108.1.1 (A:4-167) Probable acetyltranferase Atu2435 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=11.17 E-value=35 Score=20.56 Aligned_cols=72 Identities=15% Similarity=0.080 Sum_probs=41.2
Q ss_pred cceeEEeccCCceeEeeceeeeeEee--CCCeEEEEEEecchH----HHHHHHhhhhcc------ceeEEEe--------
Q 042418 3 GSWIVRHSVGSTTCLLGKAVDCNYLH--GPKYLEIDVDIGSST----VANGVLGLVNGV------ITTLVVD-------- 62 (121)
Q Consensus 3 GpwiVr~aVG~kP~LlGk~l~~~Y~~--G~~YlEiDvDI~sS~----iAr~il~l~~g~------~k~lvvD-------- 62 (121)
+.|++.....+.+ +|- ..++. ..+..|+.+.+..+. .+...+..+..+ +.++.++
T Consensus 61 ~~~~i~~~~~~~~--ig~---~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~v~~~v~~~N~~S 135 (164)
T d2fsra1 61 GALMIDLGETGEC--IGQ---IGINHGPLFPEKELGWLLYEGHEGRGYAAEAAVALRDWAFETLNLPTLVSYVSPQNRKS 135 (164)
T ss_dssp CEEEEEETTTTEE--EEE---EEEECSTTCSSCEEEEEECTTCTTSSHHHHHHHHHHHHHHHHSCCSCEEEEECTTCHHH
T ss_pred ceEEEEEcCCCeE--EEE---EEeeccCccccceEeeEeeeeeccccccccceeEEEeeccccccceeEEEEECcCCHHH
Confidence 5666665444333 331 22222 346778888877752 343333333322 3445554
Q ss_pred ------eEEEeecCCCCccccce
Q 042418 63 ------MAFLVQANTTDELPERL 79 (121)
Q Consensus 63 ------~gFvIEG~~eeELPE~L 79 (121)
+||..||..+..-|+.+
T Consensus 136 ~rl~ek~GF~~eg~~~~~~~~~~ 158 (164)
T d2fsra1 136 AAVAERIGGTLDPLAPRSDPEDL 158 (164)
T ss_dssp HHHHHHTTCEECTTSCCSSTTCE
T ss_pred HHHHHHCCCEEeeeEcccCCCce
Confidence 69999999988888776
No 7
>d2gy9s1 d.28.1.1 (S:2-80) Ribosomal protein S19 {Escherichia coli [TaxId: 562]}
Probab=11.07 E-value=43 Score=20.52 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=16.7
Q ss_pred eeEeeceeeeeEeeCCCeEEEEE
Q 042418 15 TCLLGKAVDCNYLHGPKYLEIDV 37 (121)
Q Consensus 15 P~LlGk~l~~~Y~~G~~YlEiDv 37 (121)
|-++|. +..-|.|.+|++|.|
T Consensus 40 P~~VG~--~i~VyNGk~fv~v~I 60 (79)
T d2gy9s1 40 PNMIGL--TIAVHNGRQHVPVFV 60 (79)
T ss_dssp GGGTTC--EEEEECSSSEEEEEC
T ss_pred hHHhCc--EEEEEeCCeeEEEEe
Confidence 778885 477899999999654
No 8
>d1p5dx4 d.129.2.1 (X:368-463) Phosphomannomutase/phosphoglucomutase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.99 E-value=66 Score=19.50 Aligned_cols=14 Identities=21% Similarity=0.489 Sum_probs=12.7
Q ss_pred eeEEeccCCceeEe
Q 042418 5 WIVRHSVGSTTCLL 18 (121)
Q Consensus 5 wiVr~aVG~kP~Ll 18 (121)
|++=++-|+.|+|-
T Consensus 50 W~liR~SnTEP~lr 63 (96)
T d1p5dx4 50 WGLVRASNTTPVLV 63 (96)
T ss_dssp EEEEEECSSSSEEE
T ss_pred EEEEEeCCCCCEEE
Confidence 99999999999886
No 9
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.11 E-value=53 Score=19.64 Aligned_cols=15 Identities=13% Similarity=0.317 Sum_probs=12.1
Q ss_pred eEeeceeeeeEeeCC
Q 042418 16 CLLGKAVDCNYLHGP 30 (121)
Q Consensus 16 ~LlGk~l~~~Y~~G~ 30 (121)
-+-|+.+.+.||+|.
T Consensus 81 ~~~gr~i~v~~~~g~ 95 (99)
T d2dita1 81 WFGGRQITAQAWDGT 95 (99)
T ss_dssp EETTEECEEEECCSC
T ss_pred EECCEEEEEEEeCCc
Confidence 467899999999874
No 10
>d1xxaa_ d.74.2.1 (A:) C-terminal domain of arginine repressor {Escherichia coli [TaxId: 562]}
Probab=8.86 E-value=63 Score=19.00 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=9.0
Q ss_pred CccccceeceE
Q 042418 73 DELPERLIGVV 83 (121)
Q Consensus 73 eELPE~LLG~v 83 (121)
.++||.++|++
T Consensus 34 ~~~~e~I~GTi 44 (71)
T d1xxaa_ 34 LGKAEGILGTI 44 (71)
T ss_dssp TTTTTTEEEEE
T ss_pred CCCCCcEEEEE
Confidence 46899999986
Done!