BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>042421
VIKSTKPMREEDGKEDQWQSPPIGWLKINVDVVVDVQKQVVGLEVVIRDEKDNCIAAAVN
TTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESDCLEVVELVNNRCSSMAEISWMISE
ILEMNNSFQNFRAQHTARIYNSAAHALGFRVCKR

High Scoring Gene Products

Symbol, full name Information P value
AT1G04625 protein from Arabidopsis thaliana 7.4e-10
AT2G46460 protein from Arabidopsis thaliana 4.3e-06
AT2G34320 protein from Arabidopsis thaliana 1.5e-05
AT2G02650 protein from Arabidopsis thaliana 6.1e-05
AT3G23320 protein from Arabidopsis thaliana 0.00034

The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  042421
        (154 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:1006230762 - symbol:AT1G04625 species:3702 "Ar...   144  7.4e-10   1
TAIR|locus:2058379 - symbol:AT2G04420 species:3702 "Arabi...   123  1.1e-07   1
TAIR|locus:2039129 - symbol:AT2G46460 species:3702 "Arabi...   106  4.3e-06   1
TAIR|locus:2040899 - symbol:AT2G34320 species:3702 "Arabi...   107  1.5e-05   1
TAIR|locus:2065330 - symbol:AT2G02650 species:3702 "Arabi...   103  6.1e-05   1
TAIR|locus:2090950 - symbol:AT3G23320 species:3702 "Arabi...    97  0.00034   1


>TAIR|locus:1006230762 [details] [associations]
            symbol:AT1G04625 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR012337 EMBL:CP002684 GO:GO:0003676
            SUPFAM:SSF53098 UniGene:At.20547 IPI:IPI00938819
            RefSeq:NP_001154303.1 UniGene:At.74715 ProteinModelPortal:F4I5Q9
            EnsemblPlants:AT1G04625.1 GeneID:3766658 KEGG:ath:AT1G04625
            Uniprot:F4I5Q9
        Length = 257

 Score = 144 (55.7 bits), Expect = 7.4e-10, P = 7.4e-10
 Identities = 42/146 (28%), Positives = 62/146 (42%)

Query:     4 STKPMR--EEDGKEDQWQSPPIGWLKINXXXXXXXXXXXXXXXXXIRDEKDNCIAAAVNT 61
             S+KP R   ++   + W +PPIGW K N                 +RD++   + AA   
Sbjct:    66 SSKPDRVTSQEPTANLWTTPPIGWTKCNYDGTYHSNAPSKAGWL-LRDDRGTFLGAAHAI 124

Query:    62 TKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESDCLEVVELVNNRCSSMAEISWMISEI 121
                  N   +E  A+   M+     G   +  E D  EV E+VN R S+ A  +W I +I
Sbjct:   125 GSITTNPMESELQALVMAMQHCWSRGYRKIYFEGDNKEVSEIVNGRSSNFAVFNW-IRDI 183

Query:   122 LEMNNSFQNFRAQHTARIYNSAAHAL 147
                 + F+  +   T R  N AA AL
Sbjct:   184 SAWRSKFEECKFTWTRRFSNMAADAL 209


>TAIR|locus:2058379 [details] [associations]
            symbol:AT2G04420 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004523
            "ribonuclease H activity" evidence=IEA] InterPro:IPR012337
            EMBL:CP002685 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0003964
            EMBL:AC006951 EMBL:AY649241 IPI:IPI00543252 PIR:D84457
            RefSeq:NP_178523.1 UniGene:At.41314 ProteinModelPortal:Q9SJC7
            EnsemblPlants:AT2G04420.1 GeneID:814982 KEGG:ath:AT2G04420
            TAIR:At2g04420 InParanoid:Q9SJC7 PhylomeDB:Q9SJC7
            ArrayExpress:Q9SJC7 Genevestigator:Q9SJC7 Uniprot:Q9SJC7
        Length = 221

 Score = 123 (48.4 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 34/136 (25%), Positives = 50/136 (36%)

Query:    12 DGKEDQWQSPPIGWLKINXXXXXXXXXXXXXXXXXIRDEKDNCIAAAVNTTKYFGNVAMA 71
             +    +W+ PP+GW+K N                 IRD+K     AA        N   +
Sbjct:    57 ESTHQKWEQPPMGWIKCNYDGSFNYRTQQTNSGWLIRDDKGFYKGAAQAVGGTMNNALES 116

Query:    72 EAAAIKWGMKVALRAGLASVLLESDCLEVVELVNNRCSSMAEISWMISEILEMNNSFQNF 131
             E  A+   M+     G   V+ E D  +V EL+N +       +W I E    +  F+  
Sbjct:   117 ELQALVMAMQHTWSQGYRKVIFEGDSKQVEELLNRKQMHFGAFNW-IREAWSWSKRFEEV 175

Query:   132 RAQHTARIYNSAAHAL 147
                 T R  N  A  L
Sbjct:   176 IFSWTPRTNNQPADML 191


>TAIR|locus:2039129 [details] [associations]
            symbol:AT2G46460 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR012337 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0003676 SUPFAM:SSF53098
            EMBL:AC006526 ProtClustDB:CLSN2683462 HOGENOM:HOG000131738
            IPI:IPI00522492 PIR:B84903 RefSeq:NP_182169.1 UniGene:At.53138
            ProteinModelPortal:Q9SKD4 EnsemblPlants:AT2G46460.1 GeneID:819255
            KEGG:ath:AT2G46460 TAIR:At2g46460 InParanoid:Q9SKD4 OMA:CNYDGSY
            PhylomeDB:Q9SKD4 Genevestigator:Q9SKD4 Uniprot:Q9SKD4
        Length = 160

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 35/130 (26%), Positives = 48/130 (36%)

Query:    18 WQSPPIGWLKINXXXXXXXXXXXXXXXXXIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIK 77
             W  PP GW K N                 IRDE    ++A   T  +  N   +E  A+ 
Sbjct:     3 WTRPPHGWKKCNYDGSYNREMPSKAGWI-IRDESGQFVSAGQATGNHTSNALESEFQALL 61

Query:    78 WGMKVALRAGLASVLLESDCLEVVELVNNRCSSMAEISWMISEILEMNNSFQNFRAQHTA 137
               M+     G   +  E D  EV+E++N R S     +W I ++      FQ  R     
Sbjct:    62 ITMQSCWSHGHRKIWFEGDNREVMEILNRRKSRFDIFNW-IRDVQAWKQRFQECRFTWIN 120

Query:   138 RIYNSAAHAL 147
             R  N  A  L
Sbjct:   121 RKQNKPADIL 130


>TAIR|locus:2040899 [details] [associations]
            symbol:AT2G34320 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR012337 EMBL:CP002685 GO:GO:0003676
            SUPFAM:SSF53098 GO:GO:0003964 EMBL:AC004481 EMBL:DQ446597
            IPI:IPI00534878 PIR:T02320 RefSeq:NP_180979.1 UniGene:At.66309
            ProteinModelPortal:O80781 EnsemblPlants:AT2G34320.1 GeneID:817994
            KEGG:ath:AT2G34320 TAIR:At2g34320 InParanoid:O80781 OMA:WILDISG
            PhylomeDB:O80781 ProtClustDB:CLSN2683532 ArrayExpress:O80781
            Genevestigator:O80781 Uniprot:O80781
        Length = 292

 Score = 107 (42.7 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 35/145 (24%), Positives = 62/145 (42%)

Query:     3 KSTKPMREEDGKEDQWQSPPIGWLKINXXXXXXXXXXXXXXXXXIRDEKDNCI---AAAV 59
             K++ P  E +    QW++PP  W+K N                 +R+E    +   A A+
Sbjct:   123 KASGPQVERN-LSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARAL 181

Query:    60 NTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESDCLEVVELVNNRCSSMAEISWMIS 119
               TK   NV  AE  A++W +    R     ++ ESD   +V L+N+       +   + 
Sbjct:   182 PRTK---NVLEAELEALRWAVLTMSRFNYKRIIFESDAQALVNLLNSD-DFWPTLQPALE 237

Query:   120 EILEMNNSFQNFRAQHTARIYNSAA 144
             +I ++ + F+  + + T R  N  A
Sbjct:   238 DIQQLLHHFEEVKFEFTPRGGNKVA 262


>TAIR|locus:2065330 [details] [associations]
            symbol:AT2G02650 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR012337 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0003676 SUPFAM:SSF53098
            GO:GO:0003964 EMBL:AC004136 eggNOG:KOG1075 InterPro:IPR026960
            Pfam:PF13966 IPI:IPI00519253 PIR:T00599 RefSeq:NP_178368.1
            UniGene:At.52605 ProteinModelPortal:O64712 SMR:O64712
            EnsemblPlants:AT2G02650.1 GeneID:814794 KEGG:ath:AT2G02650
            TAIR:At2g02650 InParanoid:O64712 OMA:VWRSANI PhylomeDB:O64712
            ProtClustDB:CLSN2683699 ArrayExpress:O64712 Genevestigator:O64712
            Uniprot:O64712
        Length = 365

 Score = 103 (41.3 bits), Expect = 6.1e-05, P = 6.1e-05
 Identities = 40/152 (26%), Positives = 56/152 (36%)

Query:     4 STKPMREEDGKEDQWQSPPIGWLKINXXXXXXXXXXXXXXXXXIRDEKDNCIAAAVNTTK 63
             +T P++       QW  PP GW+K N                 IR E +  I    N   
Sbjct:   192 ATNPIQTSRRDSSQWNPPPEGWVKCNFDSGYTQGSPYTRSGWTIR-ECNGHIVLCGNAKL 250

Query:    64 YFGNVAM-AEAAAIKWGMKVALRAGLASVLLESDCLEVVELVNNRCSSMAEISWMISEIL 122
                  ++ AEA      ++V    GL  V  ESD   +V L+NN     + +  +I +I 
Sbjct:   251 QSSTCSLHAEALGFLHALQVIWAHGLRYVWFESDSKSLVTLINNG-EDHSLLGTLIYDIR 309

Query:   123 EMNNSFQNFRAQHTARIYNSAAHALGFRVCKR 154
                        +   R  NSAA AL   V  R
Sbjct:   310 HWMLKLPYCSLEFVNRERNSAADALASHVHAR 341


>TAIR|locus:2090950 [details] [associations]
            symbol:AT3G23320 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR012337 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0003676 SUPFAM:SSF53098
            eggNOG:KOG1075 EMBL:AB015474 IPI:IPI00545871 RefSeq:NP_566726.1
            UniGene:At.65135 UniGene:At.68821 ProteinModelPortal:Q9LW65
            EnsemblPlants:AT3G23320.1 GeneID:821912 KEGG:ath:AT3G23320
            TAIR:At3g23320 HOGENOM:HOG000153149 InParanoid:Q9LW65
            PhylomeDB:Q9LW65 Genevestigator:Q9LW65 Uniprot:Q9LW65
        Length = 191

 Score = 97 (39.2 bits), Expect = 0.00034, P = 0.00034
 Identities = 28/144 (19%), Positives = 53/144 (36%)

Query:     4 STKPMREEDGKEDQWQSPPIGWLKINXXXXXXXXXXXXXXXXXIRDEKDNCIAAAVNTTK 63
             + K  + +  + D+WQ P   W+K N                 IR+ +  C+       +
Sbjct:    16 NVKGGQTKSSRTDKWQKPGAEWVKCNYDVSNHAGRQDSGLRWIIRNSQGTCLDCGCGKFQ 75

Query:    64 YFGNVAMAEAAAIKWGMKVALRAGLASVLLESDCLEVVELVNNRCSSMAEISWMISEILE 123
                 +  AE  A+ W ++ A   G   V  E D + V  L+ N+  +   + + +  I +
Sbjct:    76 GRQTIKEAECTALIWAIQCAWDLGYRRVEFEGDNITVNRLIRNK-ETNPRLRYYLEFIQQ 134

Query:   124 MNNSFQNFRAQHTARIYNSAAHAL 147
              + +F   +     R  N     L
Sbjct:   135 WSKAFTTVKFTFRHREQNVCVDVL 158


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.129   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      154       137   0.00091  102 3  11 22  0.40    31
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  153 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.58u 0.13s 11.71t   Elapsed:  00:00:00
  Total cpu time:  11.58u 0.13s 11.71t   Elapsed:  00:00:00
  Start:  Fri May 10 07:15:43 2013   End:  Fri May 10 07:15:43 2013

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