BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042421
(154 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q489N3|AROB_COLP3 3-dehydroquinate synthase OS=Colwellia psychrerythraea (strain 34H
/ ATCC BAA-681) GN=aroB PE=3 SV=1
Length = 354
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 18/88 (20%)
Query: 25 WLKINVDVVVDVQKQVVG----------LEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAA 74
WL+ N+ + +KQV+ ++V DEK++ + A +N FG+ AE
Sbjct: 197 WLEDNISAIKAGEKQVLAQMIEKCCQCKADIVASDEKESGVRALLNLGHTFGHAIEAEQG 256
Query: 75 AIKW--------GMKVALRAGLASVLLE 94
KW GM +A + LA LLE
Sbjct: 257 YGKWLHGEAVATGMVLAAKLALAMNLLE 284
>sp|P57909|ARLY_PASMU Argininosuccinate lyase OS=Pasteurella multocida (strain Pm70)
GN=argH PE=3 SV=1
Length = 457
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 72 EAAAIKWGMKVALRAGLASVLLESDCLEVVELVNNRCSSMAEISWMISEILEMNNSFQNF 131
E A+ G VA R L SV SD +VEL++ SMA +S +++ N+ NF
Sbjct: 210 EQLALDLGFDVATRNSLDSV---SDRDHIVELLSTASLSMAHLSRFAEDMIIFNSGESNF 266
>sp|Q54WG6|H2AX_DICDI Histone H2A.x OS=Dictyostelium discoideum GN=H2AX PE=1 SV=1
Length = 154
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 88 LASVLLESDCLEVVELVNNRCS-------SMAEISWMISEILEMNNSFQN 130
LA+VL E E++EL +N CS + I+W + LE+N+ FQ+
Sbjct: 71 LAAVL-EYLVFEILELAHNTCSISKKTRITPQHINWAVGNDLELNSLFQH 119
>sp|A1SRB7|AROB_PSYIN 3-dehydroquinate synthase OS=Psychromonas ingrahamii (strain 37)
GN=aroB PE=3 SV=1
Length = 356
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 18/98 (18%)
Query: 25 WLKINVDVVVDVQKQVVGL----------EVVIRDEKDNCIAAAVNTTKYFGNVAMAEAA 74
WL+ NV + +Q + E+V DEK+ I A +N FG+ AE
Sbjct: 197 WLEENVTAIKTLQPAAITYMIKRCCEIKAEIVSLDEKEGGIRALLNLGHTFGHAIEAEQG 256
Query: 75 AIKW--------GMKVALRAGLASVLLESDCLEVVELV 104
W GM +A + L L+ES +E + L+
Sbjct: 257 YGNWLHGEAVASGMVLAAKTALNLGLIESAQIEQIILL 294
>sp|Q7MH84|AROB_VIBVY 3-dehydroquinate synthase OS=Vibrio vulnificus (strain YJ016)
GN=aroB PE=3 SV=1
Length = 368
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 25 WLKINVDVVVDVQKQVVGL----------EVVIRDEKDNCIAAAVNTTKYFGNVAMAEAA 74
WL ++D + + +Q + EVV +DEK++ I A +N FG+ AE
Sbjct: 204 WLDEHLDALYSLDEQALTYAIARCCEIKAEVVAQDEKESGIRALLNLGHTFGHAIEAELG 263
Query: 75 AIKWGMKVALRAG 87
W A+ AG
Sbjct: 264 YGNWLHGEAVAAG 276
>sp|B0TL76|AROB_SHEHH 3-dehydroquinate synthase OS=Shewanella halifaxensis (strain
HAW-EB4) GN=aroB PE=3 SV=1
Length = 359
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 18 WQSPPIGWLKINVDVVVDVQKQV----------VGLEVVIRDEKDNCIAAAVNTTKYFGN 67
W + WL+ NV+ + + Q + EVV +DE + + A +N FG+
Sbjct: 192 WDAEFFQWLENNVEALKSLDTQALEYAISRCCEIKAEVVEKDETEQAVRALLNLGHTFGH 251
Query: 68 VAMAEAAAIKWGMKVALRAGLASVLLESDCLEVVE 102
AE W A+ AG + S+ L +V+
Sbjct: 252 AIEAEMGYGVWLHGEAVSAGTVLAAMTSNKLGLVD 286
>sp|Q088S6|AROB_SHEFN 3-dehydroquinate synthase OS=Shewanella frigidimarina (strain NCIMB
400) GN=aroB PE=3 SV=1
Length = 358
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 18 WQSPPIGWLKINVDVVVDVQKQVVGL----------EVVIRDEKDNCIAAAVNTTKYFGN 67
W + WL+ NVD + +Q + +VV +DE + + A +N FG+
Sbjct: 191 WDADFFQWLEANVDALKSLQTDALNYAIAKCCQIKADVVAQDETEQGVRALLNLGHTFGH 250
Query: 68 VAMAEAAAIKWGMKVALRAG 87
AE W A+ AG
Sbjct: 251 AIEAEMGYGVWLHGEAVSAG 270
>sp|Q8DCM0|AROB_VIBVU 3-dehydroquinate synthase OS=Vibrio vulnificus (strain CMCP6)
GN=aroB PE=3 SV=1
Length = 363
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 25 WLKINVDVVVDVQKQVVGL----------EVVIRDEKDNCIAAAVNTTKYFGNVAMAEAA 74
WL ++D + + +Q + EVV +DEK++ I A +N FG+ AE
Sbjct: 199 WLDEHLDALYSLDEQALTYAIARCCEIKAEVVAQDEKESGIRALLNLGHTFGHAIEAELG 258
Query: 75 AIKWGMKVALRAG 87
W A+ AG
Sbjct: 259 YGNWLHGEAVAAG 271
>sp|A8GZ30|AROB_SHEPA 3-dehydroquinate synthase OS=Shewanella pealeana (strain ATCC
700345 / ANG-SQ1) GN=aroB PE=3 SV=1
Length = 359
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 18 WQSPPIGWLKINVDVVVDVQKQV----------VGLEVVIRDEKDNCIAAAVNTTKYFGN 67
W + WL+ NV+ + + Q + EVV +DE + + A +N FG+
Sbjct: 192 WDAEFFQWLENNVEALKSLDTQALEYAISRCCEIKAEVVEKDETEQAVRALLNLGHTFGH 251
Query: 68 VAMAEAAAIKWGMKVALRAGLASVLLESDCLEVVE 102
AE W A+ AG + S+ L +V+
Sbjct: 252 AIEAEMGYGVWLHGEAVSAGTVLAAITSNKLGLVD 286
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.130 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,864,075
Number of Sequences: 539616
Number of extensions: 1755358
Number of successful extensions: 4690
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 4687
Number of HSP's gapped (non-prelim): 31
length of query: 154
length of database: 191,569,459
effective HSP length: 107
effective length of query: 47
effective length of database: 133,830,547
effective search space: 6290035709
effective search space used: 6290035709
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)