Query 042421
Match_columns 154
No_of_seqs 187 out of 1126
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 10:07:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042421.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042421hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hst_B Protein RV2228C/MT2287; 100.0 2.4E-31 8.1E-36 177.9 15.0 128 25-153 3-132 (141)
2 3u3g_D Ribonuclease H, RNAse H 100.0 1.9E-31 6.5E-36 178.0 13.9 129 24-153 2-136 (140)
3 2ehg_A Ribonuclease HI; RNAse 100.0 2.6E-30 8.9E-35 174.6 13.7 127 25-153 1-133 (149)
4 2qkb_A Ribonuclease H1, HS-RNA 100.0 7.5E-28 2.6E-32 163.3 14.3 131 20-154 2-151 (154)
5 3qio_A GAG-POL polyprotein; RN 99.9 2.2E-26 7.7E-31 155.2 13.5 125 20-154 7-147 (150)
6 1ril_A Ribonuclease H; hydrola 99.9 5E-27 1.7E-31 161.0 9.1 129 19-153 2-147 (166)
7 3h08_A RNH (ribonuclease H); R 99.9 1.1E-25 3.7E-30 151.4 9.9 124 24-153 3-143 (146)
8 1jl1_A Ribonuclease HI; RNAse 99.9 3E-25 1E-29 150.6 10.6 123 25-153 4-142 (155)
9 2e4l_A Ribonuclease HI, RNAse 99.9 6.4E-25 2.2E-29 149.4 11.1 124 24-153 5-144 (158)
10 3p1g_A Xenotropic murine leuke 99.9 7.6E-24 2.6E-28 144.7 15.5 131 17-153 15-155 (165)
11 2kq2_A Ribonuclease H-related 99.9 1.2E-24 4E-29 146.5 5.9 125 22-153 3-136 (147)
12 2lsn_A Reverse transcriptase; 99.9 6E-23 2E-27 140.2 13.1 128 24-153 6-162 (165)
13 1zbf_A Ribonuclease H-related 99.8 6.7E-21 2.3E-25 126.9 9.5 86 19-108 5-90 (142)
14 1mu2_A HIV-2 RT; HIV-2 reverse 99.8 4.8E-20 1.7E-24 147.2 12.8 121 20-152 431-555 (555)
15 2zd1_A Reverse transcriptase/r 99.8 5.2E-20 1.8E-24 147.1 8.6 120 20-151 434-557 (557)
16 4htu_A Ribonuclease H, RNAse H 99.8 4.4E-18 1.5E-22 111.5 10.1 80 24-107 4-83 (134)
17 1uwz_A Cytidine deaminase; CDD 92.3 0.24 8.3E-06 32.0 4.8 57 39-96 22-78 (136)
18 2fr5_A Cytidine deaminase; tet 91.4 0.27 9.3E-06 32.2 4.3 58 39-97 34-91 (146)
19 2zd1_B P51 RT; P51/P66, hetero 91.4 0.96 3.3E-05 34.8 8.0 81 21-106 320-405 (428)
20 1rw3_A POL polyprotein; RNA an 89.9 0.058 2E-06 41.8 -0.1 78 23-107 344-428 (455)
21 1r5t_A Cytidine deaminase; zin 86.0 1.2 4E-05 29.0 4.3 58 40-97 31-88 (142)
22 2z3g_A Blasticidin-S deaminase 85.6 0.98 3.4E-05 28.9 3.8 56 39-97 25-80 (130)
23 2d30_A Cytidine deaminase; pur 84.2 1.5 5.2E-05 28.4 4.2 57 40-97 32-88 (141)
24 2b3j_A TRNA adenosine deaminas 82.2 1.4 4.7E-05 29.1 3.5 55 40-95 26-81 (159)
25 2a8n_A Cytidine and deoxycytid 81.7 1.2 4.1E-05 28.9 3.1 54 40-94 23-77 (144)
26 1wwr_A TRNA adenosine deaminas 80.8 1.6 5.5E-05 29.3 3.5 56 39-95 41-97 (171)
27 2nx8_A TRNA-specific adenosine 80.5 1.7 5.8E-05 29.4 3.5 55 40-95 35-90 (179)
28 4h8e_A Undecaprenyl pyrophosph 80.2 3.6 0.00012 29.5 5.3 89 42-140 27-121 (256)
29 3r2n_A Cytidine deaminase; str 79.4 2.2 7.6E-05 27.6 3.7 56 40-96 30-85 (138)
30 3mpz_A Cytidine deaminase; ssg 78.7 2.4 8.2E-05 27.8 3.7 56 40-96 45-100 (150)
31 3dh1_A TRNA-specific adenosine 77.5 2.3 7.8E-05 29.0 3.5 42 41-83 46-88 (189)
32 2g84_A Cytidine and deoxycytid 77.2 4 0.00014 27.9 4.7 42 41-82 48-91 (197)
33 1wkq_A Guanine deaminase; doma 76.9 1.9 6.5E-05 28.7 2.9 54 41-95 32-86 (164)
34 1z3a_A TRNA-specific adenosine 74.8 2.3 8E-05 28.3 2.9 43 40-83 28-71 (168)
35 2w4l_A DCMP deaminse, deoxycyt 74.2 2.3 7.8E-05 28.7 2.7 41 40-80 31-91 (178)
36 3dmo_A Cytidine deaminase; str 69.4 7.4 0.00025 25.1 4.2 57 40-97 31-89 (138)
37 3ugs_B Undecaprenyl pyrophosph 67.4 29 0.00099 24.3 7.4 87 45-140 11-103 (225)
38 3b8f_A Putative blasticidin S 66.6 6.9 0.00023 25.3 3.7 54 42-96 24-77 (142)
39 1p6o_A Cytosine deaminase; hyd 63.9 4 0.00014 27.0 2.2 42 40-81 33-76 (161)
40 2hvw_A Deoxycytidylate deamina 58.1 14 0.00049 24.9 4.2 54 40-96 60-129 (184)
41 2vg0_A Short-chain Z-isoprenyl 56.0 41 0.0014 23.4 6.4 86 46-140 8-98 (227)
42 1ctt_A Cytidine deaminase; hyd 53.8 12 0.00042 27.3 3.5 58 40-97 208-266 (294)
43 3tue_A Tryparedoxin peroxidase 53.6 39 0.0013 23.4 5.9 50 36-87 141-190 (219)
44 2vg3_A Undecaprenyl pyrophosph 53.3 31 0.001 25.1 5.5 52 42-97 58-109 (284)
45 3sbc_A Peroxiredoxin TSA1; alp 50.6 52 0.0018 22.7 6.1 48 38-87 139-186 (216)
46 3oj6_A Blasticidin-S deaminase 49.4 23 0.00078 23.3 3.9 53 41-96 51-103 (158)
47 3gg7_A Uncharacterized metallo 48.7 7.2 0.00025 27.7 1.5 21 80-100 180-200 (254)
48 2d2r_A Undecaprenyl pyrophosph 48.6 48 0.0016 23.5 5.8 49 46-97 21-69 (245)
49 2zd1_A Reverse transcriptase/r 45.1 34 0.0012 27.0 5.0 80 22-106 323-407 (557)
50 3sgv_B Undecaprenyl pyrophosph 37.1 32 0.0011 24.5 3.4 52 42-97 20-71 (253)
51 2hxv_A Diaminohydroxyphosphori 34.6 28 0.00094 26.0 2.9 35 42-80 37-71 (360)
52 1sn9_A BBAT, tetrameric beta-B 34.6 21 0.0007 15.3 1.3 10 142-151 8-17 (26)
53 1vq2_A DCMP deaminase, deoxycy 34.4 33 0.0011 23.1 3.0 14 68-81 102-115 (193)
54 2b3z_A Riboflavin biosynthesis 32.6 33 0.0011 25.7 3.1 37 41-81 36-72 (373)
55 3msh_A Hepatitis B virus X-int 30.6 91 0.0031 18.8 5.6 53 40-99 16-73 (99)
56 3qb8_A A654L protein; GNAT N-a 29.7 83 0.0028 19.8 4.4 33 75-107 128-160 (197)
57 2g6v_A Riboflavin biosynthesis 29.3 38 0.0013 25.7 2.9 36 41-80 52-87 (402)
58 1ctt_A Cytidine deaminase; hyd 28.0 65 0.0022 23.4 3.8 53 40-93 70-124 (294)
59 3qas_B Undecaprenyl pyrophosph 27.8 51 0.0017 23.5 3.1 52 42-97 20-71 (253)
60 3rcm_A TATD family hydrolase; 26.8 19 0.00063 26.0 0.7 19 82-100 195-213 (287)
61 1f75_A Undecaprenyl pyrophosph 26.7 42 0.0014 23.8 2.5 53 42-98 23-75 (249)
62 2vqe_K 30S ribosomal protein S 25.9 1.3E+02 0.0044 19.0 5.8 50 45-95 30-84 (129)
63 3mxt_A Pantothenate synthetase 25.7 1.9E+02 0.0066 20.9 6.0 37 46-85 177-213 (285)
64 3r8n_K 30S ribosomal protein S 25.6 1.2E+02 0.0042 18.7 4.9 50 45-95 20-74 (117)
65 2xzm_K RPS14E; ribosome, trans 25.5 1.4E+02 0.0049 19.4 5.9 63 25-94 28-96 (151)
66 2g3a_A Acetyltransferase; stru 24.9 1.2E+02 0.004 18.2 4.4 31 76-106 97-127 (152)
67 3flk_A Tartrate dehydrogenase/ 24.2 2.3E+02 0.0078 21.3 6.5 51 76-136 172-222 (364)
68 3e2v_A 3'-5'-exonuclease; stru 23.8 1.1E+02 0.0038 23.3 4.5 20 80-99 287-306 (401)
69 1xcc_A 1-Cys peroxiredoxin; un 23.8 1.7E+02 0.0059 19.7 5.4 42 44-87 130-171 (220)
70 4eg2_A Cytidine deaminase; UMP 23.1 1E+02 0.0036 22.4 4.1 57 40-96 212-269 (298)
71 2zzj_A Glucuronan lyase A; bet 22.7 29 0.00097 24.5 1.0 22 15-36 157-178 (238)
72 3blx_B Isocitrate dehydrogenas 22.7 2.4E+02 0.0083 21.0 6.6 52 76-137 169-220 (354)
73 3a2v_A Probable peroxiredoxin; 22.0 1.8E+02 0.0063 20.2 5.2 42 44-87 126-167 (249)
74 2v2g_A Peroxiredoxin 6; oxidor 21.5 2E+02 0.0069 19.7 5.4 42 44-87 129-170 (233)
75 3ipw_A Hydrolase TATD family p 21.1 33 0.0011 25.3 1.2 21 80-100 231-251 (325)
76 1prx_A HORF6; peroxiredoxin, h 20.9 2E+02 0.0069 19.4 5.5 42 44-87 133-174 (224)
77 2db2_A KIAA0890 protein; DSRM 20.8 1E+02 0.0034 19.1 3.1 22 67-88 71-92 (119)
No 1
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.98 E-value=2.4e-31 Score=177.90 Aligned_cols=128 Identities=16% Similarity=0.142 Sum_probs=113.6
Q ss_pred cEEEEeceeEecCCCeeeEEEEEecCC-CceEeeccccccccchhHHHHHHHHHHHHHHHHHhCCceEEEeccHHHHHHH
Q 042421 25 WLKINVDVVVDVQKQVVGLEVVIRDEK-DNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESDCLEVVEL 103 (154)
Q Consensus 25 ~~k~n~Dgs~~~~~~~~g~G~vird~~-g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesDs~~vi~~ 103 (154)
.+++|||||+..+++.+|+|++++++. |.++...+..+ +..|+++||+.|++.||+.+.++|..+|.|+|||++++++
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~ 81 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAI-GRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQ 81 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccC-CCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHH
Confidence 489999999999999999999999987 66655555444 3679999999999999999999999999999999999999
Q ss_pred HhcCCCC-chhHHHHHHHHHHHhhcCCceEEEEeCCCCcHHHHHHHHhhhc
Q 042421 104 VNNRCSS-MAEISWMISEILEMNNSFQNFRAQHTARIYNSAAHALGFRVCK 153 (154)
Q Consensus 104 i~~~~~~-~~~~~~li~~i~~l~~~~~~~~~~~i~r~~N~~Ad~LA~~a~~ 153 (154)
+++.+.. ...+..++.+++.++.+|..++|.||+|++|+.||.||+.|+.
T Consensus 82 i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~~~N~~AD~LA~~a~~ 132 (141)
T 3hst_B 82 MSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADRLANDAMD 132 (141)
T ss_dssp HTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCGGGCHHHHHHHHHHHH
T ss_pred HhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCCcccHHHHHHHHHHHH
Confidence 9997543 3467788999999999999999999999999999999999975
No 2
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.98 E-value=1.9e-31 Score=177.98 Aligned_cols=129 Identities=19% Similarity=0.105 Sum_probs=115.6
Q ss_pred CcEEEEeceeEecCCCeeeEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhCCc----eEEEeccHHH
Q 042421 24 GWLKINVDVVVDVQKQVVGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLA----SVLLESDCLE 99 (154)
Q Consensus 24 g~~k~n~Dgs~~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~----~v~iesDs~~ 99 (154)
..+++|||||+..+++.+|+|+++++++|..+...+..+. ..|+++||+.|++.||+.+.+.+++ +|.|+|||++
T Consensus 2 ~~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~ 80 (140)
T 3u3g_D 2 NKIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIG-ETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSEL 80 (140)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEE-EECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHH
T ss_pred ceEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCC-CCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHH
Confidence 3589999999999999999999999999988766565554 4699999999999999999999999 9999999999
Q ss_pred HHHHHhcCCCC-chhHHHHHHHHHHH-hhcCCceEEEEeCCCCcHHHHHHHHhhhc
Q 042421 100 VVELVNNRCSS-MAEISWMISEILEM-NNSFQNFRAQHTARIYNSAAHALGFRVCK 153 (154)
Q Consensus 100 vi~~i~~~~~~-~~~~~~li~~i~~l-~~~~~~~~~~~i~r~~N~~Ad~LA~~a~~ 153 (154)
+++.+++.+.. ...+..++.+++.+ +..|..++|.||+|++|+.||.||+.|+.
T Consensus 81 vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~~~N~~AD~LA~~a~~ 136 (140)
T 3u3g_D 81 IVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPREKNARADELVNEAID 136 (140)
T ss_dssp HHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCGGGGHHHHHHHHHHHH
T ss_pred HHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCchhhHHHHHHHHHHHH
Confidence 99999997643 34677889999999 88999999999999999999999999975
No 3
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.97 E-value=2.6e-30 Score=174.56 Aligned_cols=127 Identities=17% Similarity=0.134 Sum_probs=110.1
Q ss_pred cEEEEeceeEe-cCCCeeeE-EEEEecCCCceEeecccccc---ccchhHHHHHHHHHHHHHHHHHhCCceEEEeccHHH
Q 042421 25 WLKINVDVVVD-VQKQVVGL-EVVIRDEKDNCIAAAVNTTK---YFGNVAMAEAAAIKWGMKVALRAGLASVLLESDCLE 99 (154)
Q Consensus 25 ~~k~n~Dgs~~-~~~~~~g~-G~vird~~g~~~~~~~~~~~---~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesDs~~ 99 (154)
++++|||||+. .+++.+|+ |+|+++ +|..+........ ...|+++||+.|++.||+.+.++|.++|.|+|||++
T Consensus 1 m~~iy~DGs~~~~n~g~~G~~G~vi~~-~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~ 79 (149)
T 2ehg_A 1 MIIGYFDGLCEPKNPGGIATFGFVIYL-DNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQL 79 (149)
T ss_dssp CCEEEEEEEEESSSSSSEEEEEEEEEC-SSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHH
T ss_pred CEEEEEeeccCCCCCChheEEEEEEEE-CCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHH
Confidence 47899999999 78899996 999999 7877644333222 367899999999999999999999999999999999
Q ss_pred HHHHHhcCCCCc-hhHHHHHHHHHHHhhcCCceEEEEeCCCCcHHHHHHHHhhhc
Q 042421 100 VVELVNNRCSSM-AEISWMISEILEMNNSFQNFRAQHTARIYNSAAHALGFRVCK 153 (154)
Q Consensus 100 vi~~i~~~~~~~-~~~~~li~~i~~l~~~~~~~~~~~i~r~~N~~Ad~LA~~a~~ 153 (154)
+++++++.+... .....++++++.++..| .++|.||+|++|..||.||+.|++
T Consensus 80 vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~~~N~~AD~LA~~a~~ 133 (149)
T 2ehg_A 80 VIKQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPREENKEADRLSRVAYE 133 (149)
T ss_dssp HHHHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCGGGCHHHHHHHHHHHH
T ss_pred HHHHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCCcccHHHHHHHHHHHH
Confidence 999999975432 46788999999999988 699999999999999999999975
No 4
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.96 E-value=7.5e-28 Score=163.35 Aligned_cols=131 Identities=11% Similarity=0.025 Sum_probs=107.6
Q ss_pred CCCCCcEEEEeceeEecCCC---eeeEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhCCceEEEecc
Q 042421 20 SPPIGWLKINVDVVVDVQKQ---VVGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESD 96 (154)
Q Consensus 20 ~p~~g~~k~n~Dgs~~~~~~---~~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesD 96 (154)
+|+.+++++|||||+..+++ .+|+|+++++..+..+. ..+.+..|++.||+.|++.||+.+.+.+..+|.|+||
T Consensus 2 ~~~~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~---~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tD 78 (154)
T 2qkb_A 2 SHMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVG---IRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTN 78 (154)
T ss_dssp CEETTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEE---EECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CCCCCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEE---eecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 57789999999999998764 59999999986554332 2344457999999999999999999999999999999
Q ss_pred HHHHHHHHhcC--------CC----CchhHHHHHHHHHHHhhcCCceEEEEeCCCC----cHHHHHHHHhhhcC
Q 042421 97 CLEVVELVNNR--------CS----SMAEISWMISEILEMNNSFQNFRAQHTARIY----NSAAHALGFRVCKR 154 (154)
Q Consensus 97 s~~vi~~i~~~--------~~----~~~~~~~li~~i~~l~~~~~~~~~~~i~r~~----N~~Ad~LA~~a~~~ 154 (154)
|+++++.|++. +. .+.....+++++..++..+ .+.|.||+++. |+.||.||+.|+++
T Consensus 79 S~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~~~-~v~~~~V~~H~g~~~N~~AD~LA~~a~~~ 151 (154)
T 2qkb_A 79 SMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGM-DIQWMHVPGHSGFIGNEEADRLAREGAKQ 151 (154)
T ss_dssp CHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTTC-EEEEEECCTTSSCHHHHHHHHHHHHHHTC
T ss_pred cHHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHcCC-ceEEEEccCCCCCHhHHHHHHHHHHHHHh
Confidence 99999999871 11 1234567899999888876 49999999865 99999999999863
No 5
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.94 E-value=2.2e-26 Score=155.22 Aligned_cols=125 Identities=11% Similarity=0.042 Sum_probs=102.2
Q ss_pred CCCCCcEEEEeceeEecCCCeeeEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhCCceEEEeccHHH
Q 042421 20 SPPIGWLKINVDVVVDVQKQVVGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESDCLE 99 (154)
Q Consensus 20 ~p~~g~~k~n~Dgs~~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesDs~~ 99 (154)
.|+.+.+++||||||..+++.+|+|+|+++..+..+. . ...|++.||+.|++.||+.+ -.+|.|+|||++
T Consensus 7 ~P~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~-----~-~~~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~ 76 (150)
T 3qio_A 7 EPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVT-----L-TDTTNQKTELQAIYLALQDS----GLEVNIVTDSQY 76 (150)
T ss_dssp SCCTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEE-----E-SSCCHHHHHHHHHHHHHHHS----CSEEEEEESCHH
T ss_pred CCCCCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEe-----C-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeCcHH
Confidence 6888999999999999999999999999886543331 2 35799999999999999984 389999999999
Q ss_pred HHHHHhcC------------CCCchhHHHHHHHHHHHhhcCCceEEEEeCCCC----cHHHHHHHHhhhcC
Q 042421 100 VVELVNNR------------CSSMAEISWMISEILEMNNSFQNFRAQHTARIY----NSAAHALGFRVCKR 154 (154)
Q Consensus 100 vi~~i~~~------------~~~~~~~~~li~~i~~l~~~~~~~~~~~i~r~~----N~~Ad~LA~~a~~~ 154 (154)
+++.+++. ...+.....+++++..++.++..+.|.||+++. |+.||.||+.|+++
T Consensus 77 v~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 77 ALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 99999872 011123456778887777789999999999997 99999999999863
No 6
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.94 E-value=5e-27 Score=160.99 Aligned_cols=129 Identities=12% Similarity=0.005 Sum_probs=101.9
Q ss_pred cCCCCCcEEEEeceeEecCCCeeeEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhCCceEEEeccHH
Q 042421 19 QSPPIGWLKINVDVVVDVQKQVVGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESDCL 98 (154)
Q Consensus 19 ~~p~~g~~k~n~Dgs~~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesDs~ 98 (154)
+||+.+.+++|||||+..+++.+|+|+|+++..+.....+ .. ...|++.||+.|++.||+.+.+. .+|.|+|||+
T Consensus 2 ~p~~m~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~--~~-~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~ 76 (166)
T 1ril_A 2 NPSPRKRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSG--GE-ACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSH 76 (166)
T ss_dssp ----CCCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECC--EE-EEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCH
T ss_pred CCCCCccEEEEECccccCCCCCEEEEEEEEECCEEEEEec--CC-CCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChH
Confidence 4788889999999999999999999999998655443332 22 35789999999999999988765 4999999999
Q ss_pred HHHHHHhcC---------CC----CchhHHHHHHHHHHHhhcCCceEEEEeC----CCCcHHHHHHHHhhhc
Q 042421 99 EVVELVNNR---------CS----SMAEISWMISEILEMNNSFQNFRAQHTA----RIYNSAAHALGFRVCK 153 (154)
Q Consensus 99 ~vi~~i~~~---------~~----~~~~~~~li~~i~~l~~~~~~~~~~~i~----r~~N~~Ad~LA~~a~~ 153 (154)
++++.|++. +. .......+++++..++..+ .+.|.||+ +++|..||.||+.|++
T Consensus 77 ~vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~~-~v~~~wV~gH~g~~~Ne~AD~LAk~a~~ 147 (166)
T 1ril_A 77 YLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPH-RVRFHFVKGHTGHPENERVDREARRQAQ 147 (166)
T ss_dssp HHHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTS-EEECCCCCGGGSCTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHhcC-eEEEEEeeCCCCchhHHHHHHHHHHHHH
Confidence 999999881 11 1123356788888888764 89999999 8899999999999986
No 7
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.93 E-value=1.1e-25 Score=151.42 Aligned_cols=124 Identities=19% Similarity=0.061 Sum_probs=100.7
Q ss_pred CcEEEEeceeEecCCCeeeEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhCCceEEEeccHHHHHHH
Q 042421 24 GWLKINVDVVVDVQKQVVGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESDCLEVVEL 103 (154)
Q Consensus 24 g~~k~n~Dgs~~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesDs~~vi~~ 103 (154)
..+++||||||..+++.+|+|+++++....... +... ...|++.||+.|++.||+.+.+ ..+|.|+|||+++++.
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~--~~~~-~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~ 77 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEI--SGYD-PATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNA 77 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEE--EEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEe--ecCC-CCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHH
Confidence 358999999999999999999999986533222 2233 3578999999999999999876 5899999999999999
Q ss_pred HhcCC-------------CCchhHHHHHHHHHHHhhcCCceEEEEeC----CCCcHHHHHHHHhhhc
Q 042421 104 VNNRC-------------SSMAEISWMISEILEMNNSFQNFRAQHTA----RIYNSAAHALGFRVCK 153 (154)
Q Consensus 104 i~~~~-------------~~~~~~~~li~~i~~l~~~~~~~~~~~i~----r~~N~~Ad~LA~~a~~ 153 (154)
+++.+ ..+.....+++++..++..+ .+.|.||+ +++|+.||.||+.|++
T Consensus 78 i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~~-~v~~~~V~gH~g~~~N~~AD~LA~~a~~ 143 (146)
T 3h08_A 78 MNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTLH-RVTFHKVKGHSDNPYNSRADELARLAIK 143 (146)
T ss_dssp HHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHHS-EEEEEECCC-CCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhhC-ceEEEEcCCcCCcHhHHHHHHHHHHHHH
Confidence 98821 11224466888888888875 59999999 8999999999999985
No 8
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.92 E-value=3e-25 Score=150.59 Aligned_cols=123 Identities=11% Similarity=-0.030 Sum_probs=99.5
Q ss_pred cEEEEeceeEecCCCeeeEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhCCceEEEeccHHHHHHHH
Q 042421 25 WLKINVDVVVDVQKQVVGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESDCLEVVELV 104 (154)
Q Consensus 25 ~~k~n~Dgs~~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesDs~~vi~~i 104 (154)
.+++|||||+..+++.+|+|+++++..+.....+ .. ...|++.||+.|++.||+.+.+. .+|.|+|||+++++.+
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~--~~-~~~tn~~aEl~A~~~aL~~~~~~--~~v~I~tDS~~vi~~i 78 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSA--GY-TRTTNNRMELMAAIVALEALKEH--AEVILSTDSQYVRQGI 78 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEE--EE-EEECHHHHHHHHHHHHHHTCCSC--CEEEEEECCHHHHHHH
T ss_pred eEEEEEccccCCCCCceEEEEEEEECCeEEEEec--CC-CCCcHHHHHHHHHHHHHHHhCcC--CcEEEEeCHHHHHHHH
Confidence 5899999999999999999999998665433332 23 35689999999999999998764 8999999999999999
Q ss_pred hc--------CCC----CchhHHHHHHHHHHHhhcCCceEEEEeC----CCCcHHHHHHHHhhhc
Q 042421 105 NN--------RCS----SMAEISWMISEILEMNNSFQNFRAQHTA----RIYNSAAHALGFRVCK 153 (154)
Q Consensus 105 ~~--------~~~----~~~~~~~li~~i~~l~~~~~~~~~~~i~----r~~N~~Ad~LA~~a~~ 153 (154)
++ .+. .+.....+++++..++.. ..+.|.||+ +++|..||.||+.|+.
T Consensus 79 ~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~-~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~ 142 (155)
T 1jl1_A 79 TQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ-HQIKWEWVKGHAGHPENERADELARAAAM 142 (155)
T ss_dssp HTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTT-CEEEEEECCSSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccccCCccCCHHHHHHHHHHHcc-CceEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 97 211 112235678888888775 489999999 7799999999999985
No 9
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.92 E-value=6.4e-25 Score=149.42 Aligned_cols=124 Identities=9% Similarity=-0.027 Sum_probs=99.2
Q ss_pred CcEEEEeceeEecCCCeeeEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhCCceEEEeccHHHHHHH
Q 042421 24 GWLKINVDVVVDVQKQVVGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESDCLEVVEL 103 (154)
Q Consensus 24 g~~k~n~Dgs~~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesDs~~vi~~ 103 (154)
..+++|||||+..+++.+|+|+|+++....... +... ...|++.||+.|++.||+.+.+. .+|.|+|||+++++.
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~--~~~~-~~~tn~~aEl~A~~~AL~~~~~~--~~v~I~tDS~~vi~~ 79 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEM--SDGF-SLTTNNRMELLAPIVALEALKEP--CKIILTSDSQYMRQG 79 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEE--EEEE-EEECHHHHHHHHHHHHHHTCSSC--CEEEEEECCHHHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEE--ecCc-CCCccHHHHHHHHHHHHHHhccC--CeEEEEeCHHHHHHH
Confidence 468999999999999999999999985432222 2223 34789999999999999998653 899999999999999
Q ss_pred Hhc--------CCC----CchhHHHHHHHHHHHhhcCCceEEEEeC----CCCcHHHHHHHHhhhc
Q 042421 104 VNN--------RCS----SMAEISWMISEILEMNNSFQNFRAQHTA----RIYNSAAHALGFRVCK 153 (154)
Q Consensus 104 i~~--------~~~----~~~~~~~li~~i~~l~~~~~~~~~~~i~----r~~N~~Ad~LA~~a~~ 153 (154)
+++ .+. .+.....+++++..++.. ..+.|.||+ +++|..||.||+.|++
T Consensus 80 i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~-~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~ 144 (158)
T 2e4l_A 80 IMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQL-HQIDWRWVKGHAGHAENERCDQLARAAAE 144 (158)
T ss_dssp HHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTT-SEEEEEECCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccccCCCcccCHHHHHHHHHHHcc-CcEEEEEccCCCCchhHHHHHHHHHHHHH
Confidence 988 221 122345677888888876 489999999 6799999999999985
No 10
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.92 E-value=7.6e-24 Score=144.72 Aligned_cols=131 Identities=14% Similarity=-0.039 Sum_probs=102.2
Q ss_pred cccCCCCCcEEEEeceeEecCCCeeeEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhCCceEEEecc
Q 042421 17 QWQSPPIGWLKINVDVVVDVQKQVVGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESD 96 (154)
Q Consensus 17 ~W~~p~~g~~k~n~Dgs~~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesD 96 (154)
.+.|.+...+++|||||+..+++.+|+|+++.+. |..+... ......|++.||+.|++.||+.+ ...+|.|+||
T Consensus 15 ~~~P~~~~~i~iytDGs~~~npG~~g~G~vi~~~-~~~~~~~--~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tD 88 (165)
T 3p1g_A 15 TDQPIPDADYTWYTDGSSFLQEGQRRAGAAVTTE-TEVIWAR--ALPAGTSAQRAELIALTQALKMA---EGKKLNVYTD 88 (165)
T ss_dssp BSSCCTTCSEEEEEEEEEEEETTEEEEEEEEECS-SCEEEEE--EECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEEC
T ss_pred CCCCCCCCCEEEEEEcccCCCCCceEEEEEEEEC-CEEEEEe--cCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEc
Confidence 4566666679999999999999999999999874 4443322 33456799999999999999998 3689999999
Q ss_pred HHHHHHHHhcCCC-CchhHHHHHHHHHHHhhcCCceEEEEeCCCC---------cHHHHHHHHhhhc
Q 042421 97 CLEVVELVNNRCS-SMAEISWMISEILEMNNSFQNFRAQHTARIY---------NSAAHALGFRVCK 153 (154)
Q Consensus 97 s~~vi~~i~~~~~-~~~~~~~li~~i~~l~~~~~~~~~~~i~r~~---------N~~Ad~LA~~a~~ 153 (154)
|+++++.+-.... ..-....+++++...+..+..+.|.||+++. |+.||.||+.|+.
T Consensus 89 S~~vi~~iw~~~~g~~v~n~dl~~~l~~~l~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~ 155 (165)
T 3p1g_A 89 SRYAFATAHVHSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAM 155 (165)
T ss_dssp CHHHHHHHHSCCCSCCCSSHHHHHHHHHHTTSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhcccCCCcccCHHHHHHHHHHHhcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHh
Confidence 9999998842211 1123345667775555578899999999986 9999999999975
No 11
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.90 E-value=1.2e-24 Score=146.47 Aligned_cols=125 Identities=10% Similarity=-0.004 Sum_probs=93.7
Q ss_pred CCCcEEEEeceeEecCCCeeeEEEEEecCCCce-Eeec-cccccc--cchhHHHHHHHHHHHHHHHHHhCCceEEEeccH
Q 042421 22 PIGWLKINVDVVVDVQKQVVGLEVVIRDEKDNC-IAAA-VNTTKY--FGNVAMAEAAAIKWGMKVALRAGLASVLLESDC 97 (154)
Q Consensus 22 ~~g~~k~n~Dgs~~~~~~~~g~G~vird~~g~~-~~~~-~~~~~~--~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesDs 97 (154)
+.+.+++|||||+.+ +.+|+|+++++ +|.. .... ....+. ..|++.||+.|++.||+.+.+.+. +|.|+|||
T Consensus 3 ~~~~i~iytDGs~~~--g~~G~G~vi~~-~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS 78 (147)
T 2kq2_A 3 DRTEYDVYTDGSYVN--GQYAWAYAFVK-DGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDY 78 (147)
T ss_dssp TTSCCEEECCCCCBT--TBCEEEEEEEE-TTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCC
T ss_pred CCCeEEEEECCCCCC--CCcEEEEEEEE-CCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECc
Confidence 467899999999987 89999999998 4543 2222 111122 368999999999999999999999 99999999
Q ss_pred HHHHHHHhcCCCCchh-HHHHHHHHHHHhhcCCceEEEEeCC----CCcHHHHHHHHhhhc
Q 042421 98 LEVVELVNNRCSSMAE-ISWMISEILEMNNSFQNFRAQHTAR----IYNSAAHALGFRVCK 153 (154)
Q Consensus 98 ~~vi~~i~~~~~~~~~-~~~li~~i~~l~~~~~~~~~~~i~r----~~N~~Ad~LA~~a~~ 153 (154)
+.+.+++++.+..... ...+.+.++.+.. .+.|.||++ ++|+.||.||+.|++
T Consensus 79 ~~i~~w~~~~w~~~~~~~~~~~~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~~ 136 (147)
T 2kq2_A 79 AGIAFWATGEWKAKNEFTQAYAKLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAKSALG 136 (147)
T ss_dssp STHHHHTTSSSSCCHHHHHHHHCGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCccCCcchHHHHHHHHHhcC---CeeEEEecCcCCCcchHHHHHHHHHHHh
Confidence 9999999886544332 2222222333322 788999985 579999999999986
No 12
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.90 E-value=6e-23 Score=140.17 Aligned_cols=128 Identities=20% Similarity=0.059 Sum_probs=97.8
Q ss_pred CcEEEEeceeEecCCCe-----eeEEEEEecCCCc--eEeeccccccccchhHHHHHHHHHHHHHHHHHhCCceEEEecc
Q 042421 24 GWLKINVDVVVDVQKQV-----VGLEVVIRDEKDN--CIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESD 96 (154)
Q Consensus 24 g~~k~n~Dgs~~~~~~~-----~g~G~vird~~g~--~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesD 96 (154)
-.+.+||||||..+++. +|+|+++...... +..... ......+++.||+.|+..+|+.+.+.+ .+|.|+||
T Consensus 6 ~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~-~~tnn~te~~Aei~Al~~al~~al~~~-~~v~I~TD 83 (165)
T 2lsn_A 6 YEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWS-IPLGNHTAQMAEIAAVEFACKKALKIP-GPVLVITD 83 (165)
T ss_dssp CSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEE-EEESSCCHHHHHHHHHHHHHHHHHHSS-SCEEEEES
T ss_pred ceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEecccc-CCchHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEeC
Confidence 45789999999999775 9999999854433 332222 222456788999999999999888876 47999999
Q ss_pred HHHHHHHHhc----------CC--CCchhHHHHHHHHHHHhhcCCceEEEEeCCC----------CcHHHHHHHHhhhc
Q 042421 97 CLEVVELVNN----------RC--SSMAEISWMISEILEMNNSFQNFRAQHTARI----------YNSAAHALGFRVCK 153 (154)
Q Consensus 97 s~~vi~~i~~----------~~--~~~~~~~~li~~i~~l~~~~~~~~~~~i~r~----------~N~~Ad~LA~~a~~ 153 (154)
|+++++.++. .. ..+-....+++++..++..+..+.|.||+.+ +|+.||.||++++.
T Consensus 84 S~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~ 162 (165)
T 2lsn_A 84 SFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGSY 162 (165)
T ss_dssp CHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhhh
Confidence 9999999975 11 1112345678888888888889999999954 59999999999864
No 13
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.85 E-value=6.7e-21 Score=126.91 Aligned_cols=86 Identities=17% Similarity=0.190 Sum_probs=73.2
Q ss_pred cCCCCCcEEEEeceeEecCCCeeeEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhCCceEEEeccHH
Q 042421 19 QSPPIGWLKINVDVVVDVQKQVVGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESDCL 98 (154)
Q Consensus 19 ~~p~~g~~k~n~Dgs~~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesDs~ 98 (154)
.||+.+++++||||||..+++.+|+|+|++ ..|..+.... .+. ..|++.||++|++.||+.+.+.++ +|.|+|||+
T Consensus 5 ~~~~~~~~~iy~DGa~~gNpG~~G~G~vl~-~~g~~~~~~~-~~~-~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~ 80 (142)
T 1zbf_A 5 AKEEIIWESLSVDVGSQGNPGIVEYKGVDT-KTGEVLFERE-PIP-IGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQ 80 (142)
T ss_dssp ---CCCSSSEEEEEEECSSSEEEEEEEEET-TTCCEEEECC-CEE-EECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCH
T ss_pred CCCCCCeEEEEEeeccCCCCCCeEEEEEEE-eCCEEEEEec-ccC-CcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehH
Confidence 467889999999999999999999999999 6676654432 233 579999999999999999999999 999999999
Q ss_pred HHHHHHhcCC
Q 042421 99 EVVELVNNRC 108 (154)
Q Consensus 99 ~vi~~i~~~~ 108 (154)
+|++++++..
T Consensus 81 ~vi~w~~~~~ 90 (142)
T 1zbf_A 81 TAIKWVKDKK 90 (142)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHcCC
Confidence 9999999865
No 14
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.83 E-value=4.8e-20 Score=147.22 Aligned_cols=121 Identities=16% Similarity=0.030 Sum_probs=98.2
Q ss_pred CCCCCcEEEEeceeEecCCCeeeEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhCCceEEEeccHHH
Q 042421 20 SPPIGWLKINVDVVVDVQKQVVGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESDCLE 99 (154)
Q Consensus 20 ~p~~g~~k~n~Dgs~~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesDs~~ 99 (154)
.|..+.+++|||||+..+++.+|+|+++.+..+.. ... ...|++.||+.|++.||+. +..+|.|+|||++
T Consensus 431 ~p~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~-----~~~-~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~ 500 (555)
T 1mu2_A 431 DPIPGAETFYTDGSCNRQSKEGKAGYVTDRGKDKV-----KKL-EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQY 500 (555)
T ss_dssp SCCTTCEEEEEEEEECTTTCCEEEEEEETTSCEEE-----EEE-SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHH
T ss_pred CCCCCceEEEEcccccCCCCCceEEEEEEeCCEee-----ccC-CCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHH
Confidence 45678899999999999999999999998754321 112 3568999999999999987 7789999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHHhhcCCceEEEEeCCC----CcHHHHHHHHhhh
Q 042421 100 VVELVNNRCSSMAEISWMISEILEMNNSFQNFRAQHTARI----YNSAAHALGFRVC 152 (154)
Q Consensus 100 vi~~i~~~~~~~~~~~~li~~i~~l~~~~~~~~~~~i~r~----~N~~Ad~LA~~a~ 152 (154)
+++.+++.... ....+++++..++..+..+.+.||+++ +|+.||.||+.|+
T Consensus 501 v~~~i~~~~~~--~~~~l~~~~~~~~~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 501 VMGIVASQPTE--SESKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp HHHHHHTCCSE--ESCHHHHHHHHHHHHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred HHHHHhccccc--ccHHHHHHHHHHhccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 99999984322 224456677766666889999999985 6999999999985
No 15
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.81 E-value=5.2e-20 Score=147.11 Aligned_cols=120 Identities=13% Similarity=0.054 Sum_probs=94.3
Q ss_pred CCCCCcEEEEeceeEecCCCeeeEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhCCceEEEeccHHH
Q 042421 20 SPPIGWLKINVDVVVDVQKQVVGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESDCLE 99 (154)
Q Consensus 20 ~p~~g~~k~n~Dgs~~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesDs~~ 99 (154)
.|..+.+++|||||+..+++.+|+|+++.+...... .. ...|++.||+.|++.||+.+ ..+|.|+|||++
T Consensus 434 ep~~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~-----~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~ 503 (557)
T 2zd1_A 434 EPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVV-----PL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQY 503 (557)
T ss_dssp SCCTTSCEEEEEEEECTTTCCEEEEEEETTSCEEEE-----EE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHH
T ss_pred CCCCCCEEEEEccCCCCCCCceEEEEEEECCcEEEe-----cC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHH
Confidence 466788999999999999999999999985443232 12 35789999999999999998 689999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHHhhcCCceEEEEeCCC----CcHHHHHHHHhh
Q 042421 100 VVELVNNRCSSMAEISWMISEILEMNNSFQNFRAQHTARI----YNSAAHALGFRV 151 (154)
Q Consensus 100 vi~~i~~~~~~~~~~~~li~~i~~l~~~~~~~~~~~i~r~----~N~~Ad~LA~~a 151 (154)
+++.+++.... ....+++++...+.++..+.+.||+++ +|+.||.||+.|
T Consensus 504 vi~~i~~~~~~--~~~~l~~~~~~~l~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 504 ALGIIQAQPDK--SESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp HHHHHTTCCSE--ESSHHHHHHHHHHHHCSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred HHHHHhcCCcc--CCHHHHHHHHHHHhcCCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 99999985432 123455666655556778999999996 599999999986
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.76 E-value=4.4e-18 Score=111.53 Aligned_cols=80 Identities=18% Similarity=0.201 Sum_probs=67.2
Q ss_pred CcEEEEeceeEecCCCeeeEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhCCceEEEeccHHHHHHH
Q 042421 24 GWLKINVDVVVDVQKQVVGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESDCLEVVEL 103 (154)
Q Consensus 24 g~~k~n~Dgs~~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesDs~~vi~~ 103 (154)
....+||||||.++++.+|+|+|+++ .|..+... ..+ +..|+++||++|++.||+.+.+.+.+ |.|+|||++|+++
T Consensus 4 ~~~~iytDGac~GNPGp~G~ggV~~~-~g~~~~~~-g~~-~~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~w 79 (134)
T 4htu_A 4 IWESLSVDVGSQGNPGIVEYKGVDTK-TGEVLFER-EPI-PIGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKW 79 (134)
T ss_dssp CSSSEEEEEEEETTTEEEEEEEEETT-TCCEEEEE-EEE-EEECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHH
T ss_pred cceEEEEeeccCCCCCCeEEEEEEEE-CCEEEEEe-cCC-CCCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHH
Confidence 45679999999999999999988888 56544433 223 36799999999999999999998876 8999999999999
Q ss_pred HhcC
Q 042421 104 VNNR 107 (154)
Q Consensus 104 i~~~ 107 (154)
+++.
T Consensus 80 i~~~ 83 (134)
T 4htu_A 80 VKDK 83 (134)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9873
No 17
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=92.34 E-value=0.24 Score=32.03 Aligned_cols=57 Identities=9% Similarity=0.049 Sum_probs=41.1
Q ss_pred CeeeEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhCCceEEEecc
Q 042421 39 QVVGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESD 96 (154)
Q Consensus 39 ~~~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesD 96 (154)
+...+|+++++.+|+++.+.............||..|+..+... -...+..+.+.+|
T Consensus 22 s~~~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~ 78 (136)
T 1uwz_A 22 SKFQVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAAD 78 (136)
T ss_dssp TCCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEES
T ss_pred CCCCEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeC
Confidence 34578999999999988654433333345689999999998875 3455788888876
No 18
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=91.43 E-value=0.27 Score=32.23 Aligned_cols=58 Identities=10% Similarity=0.056 Sum_probs=41.3
Q ss_pred CeeeEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhCCceEEEeccH
Q 042421 39 QVVGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESDC 97 (154)
Q Consensus 39 ~~~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesDs 97 (154)
....+|+++++.+|+++.+.............||..|+..|... -...+..+.+.+|.
T Consensus 34 s~f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~ 91 (146)
T 2fr5_A 34 SRFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDL 91 (146)
T ss_dssp TCCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESC
T ss_pred CCCCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCC
Confidence 35578999998899888654433222334689999999998865 34457888888774
No 19
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=91.37 E-value=0.96 Score=34.79 Aligned_cols=81 Identities=7% Similarity=-0.192 Sum_probs=52.0
Q ss_pred CCCCcEEEEeceeEecCCCeeeEEEEEecCCCceEeeccccccccchhHHHHHHH-HHHHHHHHHH--hCC--ceEEEec
Q 042421 21 PPIGWLKINVDVVVDVQKQVVGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAA-IKWGMKVALR--AGL--ASVLLES 95 (154)
Q Consensus 21 p~~g~~k~n~Dgs~~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~A-l~~aL~~a~~--~~~--~~v~ies 95 (154)
.+..-+.+++|+|- .+.+|+|+..+.|....++...-...-...+-|++| +..+|+.-.- .|- ..+++.|
T Consensus 320 d~~~~~~l~~das~-----~g~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~t 394 (428)
T 2zd1_B 320 DPSKDLIAEIQKQG-----QGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQ 394 (428)
T ss_dssp CTTSCCEEEEEEEE-----TTEEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSC
T ss_pred CCCCCEEEEEecCC-----CCcEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCcc
Confidence 34455789999984 236788887766654433322222223456677778 9999987654 343 6678899
Q ss_pred cHHHHHHHHhc
Q 042421 96 DCLEVVELVNN 106 (154)
Q Consensus 96 Ds~~vi~~i~~ 106 (154)
|.+.+.-+.+.
T Consensus 395 d~~~~~~~~~~ 405 (428)
T 2zd1_B 395 KETWETWWTEY 405 (428)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99877655443
No 20
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=89.85 E-value=0.058 Score=41.84 Aligned_cols=78 Identities=15% Similarity=-0.033 Sum_probs=51.1
Q ss_pred CCcEEEEeceeEecCCCeeeEEEEEe-cCC--CceEeecccccccc---chhHHHHHHHHHHHHHHHHHh-CCceEEEec
Q 042421 23 IGWLKINVDVVVDVQKQVVGLEVVIR-DEK--DNCIAAAVNTTKYF---GNVAMAEAAAIKWGMKVALRA-GLASVLLES 95 (154)
Q Consensus 23 ~g~~k~n~Dgs~~~~~~~~g~G~vir-d~~--g~~~~~~~~~~~~~---~s~~~AE~~Al~~aL~~a~~~-~~~~v~ies 95 (154)
..-+.+++|+|-. |+|+|+. ... +..+...++.+... -+..+.|++|+..|++..... --+++.|.|
T Consensus 344 ~~~~~l~~DAS~~------~~gavL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~t 417 (455)
T 1rw3_A 344 TKPFELFVDEKQG------YAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKA 417 (455)
T ss_dssp CCTTSCEEEEEEC------SSSBEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEEC
T ss_pred CCcEEEEEeccCC------cceeEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEe
Confidence 3446789998743 2333443 222 34555555554432 346789999999999988763 337999999
Q ss_pred cHHHHHHHHhcC
Q 042421 96 DCLEVVELVNNR 107 (154)
Q Consensus 96 Ds~~vi~~i~~~ 107 (154)
|+. +...++.+
T Consensus 418 Dh~-~~~~l~~~ 428 (455)
T 1rw3_A 418 PHA-VEALVKQP 428 (455)
T ss_dssp SSC-TTTTSSST
T ss_pred cCh-HHHHhCCC
Confidence 997 66666654
No 21
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=85.97 E-value=1.2 Score=29.00 Aligned_cols=58 Identities=17% Similarity=0.180 Sum_probs=40.2
Q ss_pred eeeEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhCCceEEEeccH
Q 042421 40 VVGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESDC 97 (154)
Q Consensus 40 ~~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesDs 97 (154)
....|+++++.+|++..+...........+.||-.|+..+...-....+..+.+.+|.
T Consensus 31 ~f~VGAAl~~~dG~i~~G~NvEnasy~~t~cAEr~Ai~~a~~~G~~~~i~~i~vv~~~ 88 (142)
T 1r5t_A 31 HFRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAGHRSGWKCMVICGDS 88 (142)
T ss_dssp CCCEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCSCCCEEEEEESC
T ss_pred CCCEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHcCCCCceEEEEEEeCC
Confidence 5578999999999888755433323345689999999988764322227788887764
No 22
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=85.57 E-value=0.98 Score=28.87 Aligned_cols=56 Identities=7% Similarity=0.001 Sum_probs=39.5
Q ss_pred CeeeEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhCCceEEEeccH
Q 042421 39 QVVGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESDC 97 (154)
Q Consensus 39 ~~~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesDs 97 (154)
+...+|+++++.+|+++.+.... .....+.||..|+..+... -...+..+.+.+|.
T Consensus 25 s~f~VGAal~~~dG~i~~G~NvE--~~~~t~cAE~~Ai~~A~~~-G~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 25 EDYSVASAALSSDGRIFTGVNVY--HFTGGPCAELVVLGTAAAA-AAGNLTCIVAIGNE 80 (130)
T ss_dssp SSSCEEEEEEETTSCEEEEECCC--CTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEETT
T ss_pred CCCCEEEEEEecCCeEEEEeccc--cCCcccCHHHHHHHHHHHc-CCCceEEEEEEECC
Confidence 34678999998999888644332 3445789999999988863 22456788887763
No 23
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=84.16 E-value=1.5 Score=28.45 Aligned_cols=57 Identities=9% Similarity=0.080 Sum_probs=40.3
Q ss_pred eeeEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhCCceEEEeccH
Q 042421 40 VVGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESDC 97 (154)
Q Consensus 40 ~~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesDs 97 (154)
....|+++++.+|++..+..-........+-||-.|+..+... =...+..|.+.+|.
T Consensus 32 ~f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~-G~~~~~aiav~~~~ 88 (141)
T 2d30_A 32 KFQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSE-GDKEFVAIAIVADT 88 (141)
T ss_dssp CCCEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESC
T ss_pred CCcEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHC-CCCceEEEEEEeCC
Confidence 4578999999999887665433333345689999999988764 22446788888774
No 24
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=82.23 E-value=1.4 Score=29.14 Aligned_cols=55 Identities=29% Similarity=0.193 Sum_probs=34.5
Q ss_pred eeeEEEEEecCCCceEeecccccc-ccchhHHHHHHHHHHHHHHHHHhCCceEEEec
Q 042421 40 VVGLEVVIRDEKDNCIAAAVNTTK-YFGNVAMAEAAAIKWGMKVALRAGLASVLLES 95 (154)
Q Consensus 40 ~~g~G~vird~~g~~~~~~~~~~~-~~~s~~~AE~~Al~~aL~~a~~~~~~~v~ies 95 (154)
...+|+||.+ +|+++..+..... ......+||..|+..+.+..-...+....+++
T Consensus 26 ~~pVGAviv~-~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tlyv 81 (159)
T 2b3j_A 26 EVPIGAIITK-DDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYV 81 (159)
T ss_dssp SCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred CCCEEEEEEE-CCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcceeEEEE
Confidence 4567777777 7888865543221 12335799999999887654334455555554
No 25
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=81.65 E-value=1.2 Score=28.85 Aligned_cols=54 Identities=24% Similarity=0.142 Sum_probs=33.6
Q ss_pred eeeEEEEEecCCCceEeecccccc-ccchhHHHHHHHHHHHHHHHHHhCCceEEEe
Q 042421 40 VVGLEVVIRDEKDNCIAAAVNTTK-YFGNVAMAEAAAIKWGMKVALRAGLASVLLE 94 (154)
Q Consensus 40 ~~g~G~vird~~g~~~~~~~~~~~-~~~s~~~AE~~Al~~aL~~a~~~~~~~v~ie 94 (154)
...+|+||.+ +|+++..+..... .......||..|+..+.+..-...+....++
T Consensus 23 ~~~VGAviv~-~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~~~~~tly 77 (144)
T 2a8n_A 23 EVPIGAVLVL-DGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLY 77 (144)
T ss_dssp SCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEE
T ss_pred CCCEEEEEEE-CCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCCCccCCeEEE
Confidence 4467888777 7888865544322 1223578999999998765333334444554
No 26
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=80.76 E-value=1.6 Score=29.26 Aligned_cols=56 Identities=23% Similarity=0.110 Sum_probs=36.3
Q ss_pred CeeeEEEEEecCCCceEeecccccc-ccchhHHHHHHHHHHHHHHHHHhCCceEEEec
Q 042421 39 QVVGLEVVIRDEKDNCIAAAVNTTK-YFGNVAMAEAAAIKWGMKVALRAGLASVLLES 95 (154)
Q Consensus 39 ~~~g~G~vird~~g~~~~~~~~~~~-~~~s~~~AE~~Al~~aL~~a~~~~~~~v~ies 95 (154)
+...+|+||.+ +|+++..+..... .......||..|+..+.+..-...+....+++
T Consensus 41 ~~~pVGAvIV~-dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~~~tlYv 97 (171)
T 1wwr_A 41 GEVPVGAIIVK-EGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYV 97 (171)
T ss_dssp TSCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEE
T ss_pred CCCCEEEEEEE-CCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccCceEEEE
Confidence 35567888887 7888865543222 12235789999999887654444456666664
No 27
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=80.46 E-value=1.7 Score=29.36 Aligned_cols=55 Identities=18% Similarity=0.041 Sum_probs=33.4
Q ss_pred eeeEEEEEecCCCceEeecccccc-ccchhHHHHHHHHHHHHHHHHHhCCceEEEec
Q 042421 40 VVGLEVVIRDEKDNCIAAAVNTTK-YFGNVAMAEAAAIKWGMKVALRAGLASVLLES 95 (154)
Q Consensus 40 ~~g~G~vird~~g~~~~~~~~~~~-~~~s~~~AE~~Al~~aL~~a~~~~~~~v~ies 95 (154)
...+|+||.+ +|+++..+..... ......+||..|+..+.+..-...+....+++
T Consensus 35 ~~pVGAVIV~-~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~g~tlYv 90 (179)
T 2nx8_A 35 EIPIGCVIVK-DGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFV 90 (179)
T ss_dssp SCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred CCCEEEEEEE-CCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCcccceEEEE
Confidence 4567887776 7888875543322 12235799999999887654333344444443
No 28
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=80.24 E-value=3.6 Score=29.48 Aligned_cols=89 Identities=12% Similarity=0.078 Sum_probs=54.1
Q ss_pred eEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhCCceEEEeccHHHHHHHHhcCCCCchhHHHHHHHH
Q 042421 42 GLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESDCLEVVELVNNRCSSMAEISWMISEI 121 (154)
Q Consensus 42 g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesDs~~vi~~i~~~~~~~~~~~~li~~i 121 (154)
-+|+ |-|.+|++-.. ..++ ...-..+-+.++...++++.++|++.|.++.-|.. +-..+..+...++.-+
T Consensus 27 HVAi-IMDGN~RwAk~--rgl~-r~~GH~~G~~~~~~iv~~c~~lGI~~lTlYaFStE------NwkRp~~EV~~Lm~L~ 96 (256)
T 4h8e_A 27 HIAI-IMDGNGRWAKK--RKMP-RIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTE------NWSRPESEVNYIMNLP 96 (256)
T ss_dssp EEEE-ECCCHHHHHHH--TTCC-HHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETT------GGGSCHHHHHHHHHHH
T ss_pred EEEE-EcCCCHHHHHH--CCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchh------hhCCCHHHHHHHHHHH
Confidence 4544 45888876432 1222 34567888899999999999999999999988732 1112233444333322
Q ss_pred HHHh----hc--CCceEEEEeCCCC
Q 042421 122 LEMN----NS--FQNFRAQHTARIY 140 (154)
Q Consensus 122 ~~l~----~~--~~~~~~~~i~r~~ 140 (154)
...+ .. -..+++.+|.+..
T Consensus 97 ~~~l~~~~~~l~~~~vrvr~iGd~~ 121 (256)
T 4h8e_A 97 VNFLKTFLPELIEKNVKVETIGFTD 121 (256)
T ss_dssp HHHHHHHHHHHHHTTCEEEEESCGG
T ss_pred HHHHHHHHHHHHHcCeEEEEecCcc
Confidence 2111 11 2567888887644
No 29
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=79.44 E-value=2.2 Score=27.55 Aligned_cols=56 Identities=14% Similarity=0.022 Sum_probs=38.7
Q ss_pred eeeEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhCCceEEEecc
Q 042421 40 VVGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESD 96 (154)
Q Consensus 40 ~~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesD 96 (154)
....|++++..+|++..+...........+.||-.|+..+...- ...+..|.+-+|
T Consensus 30 ~f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Av~~G-~~~i~aiav~~~ 85 (138)
T 3r2n_A 30 NFPVGVAGFVNDGRLITGVNVENASYGLALCAECSMISALYATG-GGRLVAVYCVDG 85 (138)
T ss_dssp CCCCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEECT
T ss_pred CCcEEEEEEeCCCcEEEEEcccccCCCCCcCHHHHHHHHHHHcC-CCceEEEEEEcC
Confidence 45788889999999886655333333457889999999887642 334667777655
No 30
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=78.69 E-value=2.4 Score=27.83 Aligned_cols=56 Identities=9% Similarity=-0.080 Sum_probs=39.7
Q ss_pred eeeEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhCCceEEEecc
Q 042421 40 VVGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESD 96 (154)
Q Consensus 40 ~~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesD 96 (154)
...+|++++..+|+++.+..-........+-||-.|+..++.. -...+..|.+-+|
T Consensus 45 ~F~VGAAll~~dG~i~tG~NvEnasy~~t~CAEr~Ai~~Avs~-G~~~i~aiavv~~ 100 (150)
T 3mpz_A 45 GFPVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSG-GGGRLVALSCVGP 100 (150)
T ss_dssp CCCCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEECT
T ss_pred CCCEEEEEEeCCCCEEEEEecccccCCccccHHHHHHHHHHHc-CCCceEEEEEEcC
Confidence 4578999999999988765543333445788999999888764 2234677777665
No 31
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=77.47 E-value=2.3 Score=29.02 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=28.5
Q ss_pred eeEEEEEecCCCceEeecccccc-ccchhHHHHHHHHHHHHHHH
Q 042421 41 VGLEVVIRDEKDNCIAAAVNTTK-YFGNVAMAEAAAIKWGMKVA 83 (154)
Q Consensus 41 ~g~G~vird~~g~~~~~~~~~~~-~~~s~~~AE~~Al~~aL~~a 83 (154)
.-+|+||.+ +|+++..+..... .......||..|+..+.+.+
T Consensus 46 ~pVGAVIV~-~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~ 88 (189)
T 3dh1_A 46 VPVGCLMVY-NNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWC 88 (189)
T ss_dssp CCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred CCEEEEEEE-CCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHH
Confidence 457777776 6888876654321 12346799999999987654
No 32
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=77.15 E-value=4 Score=27.93 Aligned_cols=42 Identities=19% Similarity=0.054 Sum_probs=29.6
Q ss_pred eeEEEEEecCC-CceEeecccccc-ccchhHHHHHHHHHHHHHH
Q 042421 41 VGLEVVIRDEK-DNCIAAAVNTTK-YFGNVAMAEAAAIKWGMKV 82 (154)
Q Consensus 41 ~g~G~vird~~-g~~~~~~~~~~~-~~~s~~~AE~~Al~~aL~~ 82 (154)
.-+|+||.+.+ |+++..+..... ......+||..|+..+-+.
T Consensus 48 ~PvGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~a~~~ 91 (197)
T 2g84_A 48 GPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAK 91 (197)
T ss_dssp CSCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHH
T ss_pred CCEEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHHHHHH
Confidence 34588888866 999877655332 2334679999999987664
No 33
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=76.93 E-value=1.9 Score=28.68 Aligned_cols=54 Identities=26% Similarity=0.159 Sum_probs=32.9
Q ss_pred eeEEEEEecCCCceEeecccccc-ccchhHHHHHHHHHHHHHHHHHhCCceEEEec
Q 042421 41 VGLEVVIRDEKDNCIAAAVNTTK-YFGNVAMAEAAAIKWGMKVALRAGLASVLLES 95 (154)
Q Consensus 41 ~g~G~vird~~g~~~~~~~~~~~-~~~s~~~AE~~Al~~aL~~a~~~~~~~v~ies 95 (154)
.-+|+||.+ +|+++..+..... .......||..|+..+.+..-...+....+++
T Consensus 32 ~pVGAVIV~-~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~~~l~g~tlYv 86 (164)
T 1wkq_A 32 GPFGAVIVK-DGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYT 86 (164)
T ss_dssp SSCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCTTEEEEE
T ss_pred CCEEEEEEE-CCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCCCCcCceEEEE
Confidence 346777764 6888866554322 12236799999999887654333444555554
No 34
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=74.76 E-value=2.3 Score=28.34 Aligned_cols=43 Identities=23% Similarity=0.193 Sum_probs=28.0
Q ss_pred eeeEEEEEecCCCceEeecccccc-ccchhHHHHHHHHHHHHHHH
Q 042421 40 VVGLEVVIRDEKDNCIAAAVNTTK-YFGNVAMAEAAAIKWGMKVA 83 (154)
Q Consensus 40 ~~g~G~vird~~g~~~~~~~~~~~-~~~s~~~AE~~Al~~aL~~a 83 (154)
..-+|+||.+ +|+++..+..... ......+||..|+..+.+..
T Consensus 28 ~~pVGAviV~-~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~ 71 (168)
T 1z3a_A 28 EVPVGAVLVH-NNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVM 71 (168)
T ss_dssp SCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred CCcEEEEEEE-CCEEEEEEEcccccCCCcchhHHHHHHHHHHHHc
Confidence 3457777774 7888865543321 12234799999999887654
No 35
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=74.16 E-value=2.3 Score=28.71 Aligned_cols=41 Identities=20% Similarity=0.117 Sum_probs=27.2
Q ss_pred eeeEEEEEecCCCceEeeccccccc-c-----------ch--------hHHHHHHHHHHHH
Q 042421 40 VVGLEVVIRDEKDNCIAAAVNTTKY-F-----------GN--------VAMAEAAAIKWGM 80 (154)
Q Consensus 40 ~~g~G~vird~~g~~~~~~~~~~~~-~-----------~s--------~~~AE~~Al~~aL 80 (154)
..-+|+||.+.+|+++..+....+. + .+ ...||..||..+.
T Consensus 31 ~~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~~g~p~~~~~~~t~HAE~~AI~~a~ 91 (178)
T 2w4l_A 31 NSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAELNAIMNKN 91 (178)
T ss_dssp SCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBCHHHHHHHC--
T ss_pred CCCEEEEEEecCCEEEEEEECCCCcCccccccccccccCCccccccCCcCCHHHHHHHHhc
Confidence 4568899988889988665543321 1 22 3799999998863
No 36
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=69.44 E-value=7.4 Score=25.08 Aligned_cols=57 Identities=9% Similarity=0.109 Sum_probs=40.3
Q ss_pred eeeEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHh--CCceEEEeccH
Q 042421 40 VVGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRA--GLASVLLESDC 97 (154)
Q Consensus 40 ~~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~--~~~~v~iesDs 97 (154)
....|+.++..+|++..+..-........+-||-.|+..++..- .. .+..|.+-+|.
T Consensus 31 ~F~VGAAll~~dG~iytG~NVEnasy~~t~CAEr~Ai~~Avs~G-~~~~~i~aiavv~~~ 89 (138)
T 3dmo_A 31 NFKVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALAAG-YRPGEFAAIAVVGET 89 (138)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCTTCEEEEEEEESC
T ss_pred CCCEEEEEEeCCCCEEEEEeecccccccccCHHHHHHHHHHHcC-CCcccEEEEEEEcCC
Confidence 45789999999999887765444334456889999998887531 12 46677787764
No 37
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=67.40 E-value=29 Score=24.27 Aligned_cols=87 Identities=13% Similarity=0.042 Sum_probs=47.7
Q ss_pred EEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhCCceEEEeccHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 042421 45 VVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESDCLEVVELVNNRCSSMAEISWMISEILEM 124 (154)
Q Consensus 45 ~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesDs~~vi~~i~~~~~~~~~~~~li~~i~~l 124 (154)
++|-|.+|++-.... ++ ...-..+=+.++...++++.++|++.+.++.=|. .+-..+..+...|++-+...
T Consensus 11 AiIMDGNrRwAk~rg--l~-r~~GH~~G~~~~~~i~~~c~~lGI~~lTlYaFSt------ENw~Rp~~EV~~Lm~L~~~~ 81 (225)
T 3ugs_B 11 AVVMDGNRRWARAKG--FL-AKLGYSQGVKTMQKLMEVCMEENISNLSLFAFST------ENWKRPKDEIDFIFELLDRC 81 (225)
T ss_dssp EEEECCCC-----------------CHHHHHHHHHHHHHHHTTCCEEEEEEEES------GGGGSCHHHHHHHHHHHHHH
T ss_pred EEeccCcHHHHHHCC--CC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEcc------cccCCCHHHHHHHHHHHHHH
Confidence 345599998854322 22 2456778888999999999999999999986331 11112334554444333322
Q ss_pred h----hc--CCceEEEEeCCCC
Q 042421 125 N----NS--FQNFRAQHTARIY 140 (154)
Q Consensus 125 ~----~~--~~~~~~~~i~r~~ 140 (154)
+ .. -..+++.+|.+..
T Consensus 82 l~~~~~~l~~~~vrvr~iGd~~ 103 (225)
T 3ugs_B 82 LDEALEKFEKNNVRLRAIGDLS 103 (225)
T ss_dssp HHHHHHHSTTTTEEEEEESCGG
T ss_pred HHHHHHHHHHCCcEEEEEeChH
Confidence 2 21 2578999998754
No 38
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=66.64 E-value=6.9 Score=25.26 Aligned_cols=54 Identities=19% Similarity=0.105 Sum_probs=36.5
Q ss_pred eEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhCCceEEEecc
Q 042421 42 GLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESD 96 (154)
Q Consensus 42 g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesD 96 (154)
.+|++++..+|+++.+...........+.||-.|+..+...- ...+..+.+.+|
T Consensus 24 ~VGAAl~~~dG~i~~G~NvEnas~~~~lcAEr~Ai~~a~~~G-~~~~~~~~v~~~ 77 (142)
T 3b8f_A 24 GGAAAIRVEDGTIYTSVAPDVINASTELCMETGAILEAHKFQ-KKVTHSICLARE 77 (142)
T ss_dssp EEEEEEEETTSCEEEECCCCCSSGGGCCCTTHHHHHHHHHHT-CCEEEEEEEEES
T ss_pred CEEEEEEeCCCcEEEEECcccccCCcccCHHHHHHHHHHHCC-CCcEEEEEEEec
Confidence 788999999998886554433333457899999999887631 122456666654
No 39
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=63.94 E-value=4 Score=26.97 Aligned_cols=42 Identities=7% Similarity=-0.024 Sum_probs=28.7
Q ss_pred eeeEEEEEe-cCCCceEeeccccccc-cchhHHHHHHHHHHHHH
Q 042421 40 VVGLEVVIR-DEKDNCIAAAVNTTKY-FGNVAMAEAAAIKWGMK 81 (154)
Q Consensus 40 ~~g~G~vir-d~~g~~~~~~~~~~~~-~~s~~~AE~~Al~~aL~ 81 (154)
..-+|+||. +.+|+++..+...... .....+||..|+..+.+
T Consensus 33 ~~pVGAviVd~~~g~Ii~~G~N~~~~~~~~t~HAE~~Ai~~a~~ 76 (161)
T 1p6o_A 33 GVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGR 76 (161)
T ss_dssp SCCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHCS
T ss_pred CCCEEEEEEEecCCEEEEEEECCCCCCCCcccCHHHHHHHHHHH
Confidence 456899999 4789988665543221 12247999999998764
No 40
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=58.05 E-value=14 Score=24.91 Aligned_cols=54 Identities=15% Similarity=-0.008 Sum_probs=33.1
Q ss_pred eeeEEEEEecCCCceEeeccccccc----c------------chhHHHHHHHHHHHHHHHHHhCCceEEEecc
Q 042421 40 VVGLEVVIRDEKDNCIAAAVNTTKY----F------------GNVAMAEAAAIKWGMKVALRAGLASVLLESD 96 (154)
Q Consensus 40 ~~g~G~vird~~g~~~~~~~~~~~~----~------------~s~~~AE~~Al~~aL~~a~~~~~~~v~iesD 96 (154)
...+|+||.+ +|+++..+...... + .....||..||..+.+. ...+....+++.
T Consensus 60 ~~~VGAVIV~-dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~~t~HAE~~AI~~A~~~--g~~l~g~tlYvT 129 (184)
T 2hvw_A 60 RAYVGAVLVK-NNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKE--GISANNTEIYVT 129 (184)
T ss_dssp TCCCEEEEEE-TTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHHHHHH--TCCCTTEEEEEE
T ss_pred CCCEEEEEEE-CCEEEEEEECCCcccccccccccccccccccCCccCHHHHHHHHHHHc--CCCceeEEEEEC
Confidence 4457777776 78888655443221 1 12579999999987653 123556666653
No 41
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=56.00 E-value=41 Score=23.44 Aligned_cols=86 Identities=13% Similarity=0.066 Sum_probs=48.6
Q ss_pred EEecCCCceEeecccc-ccccchhHHHHHHHHHHHHHHHHHhCCceEEEeccHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 042421 46 VIRDEKDNCIAAAVNT-TKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESDCLEVVELVNNRCSSMAEISWMISEILEM 124 (154)
Q Consensus 46 vird~~g~~~~~~~~~-~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesDs~~vi~~i~~~~~~~~~~~~li~~i~~l 124 (154)
+|-|.+|++-. ... ++ ...-..+-+.++.+-++++.++|++.+.++.=|..- ++ .+..+...+.+-+...
T Consensus 8 iImDGN~RwA~--~~g~l~-~~~GH~~G~~~l~~i~~~c~~~GI~~lTlYaFSteN---~k---Rp~~Ev~~Lm~l~~~~ 78 (227)
T 2vg0_A 8 VLCDGNRRWAR--SAGYDD-VSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTEN---LQ---RDPDELAALIEIITDV 78 (227)
T ss_dssp EECCCHHHHHH--HTTCSC-THHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETGG---GG---SCHHHHHHHHHHHHHH
T ss_pred EEecCChHHHH--HcCCCc-hhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeecccc---cC---CCHHHHHHHHHHHHHH
Confidence 45577765521 111 11 223445667889999999999999999998744111 11 1223444443333332
Q ss_pred hh----cCCceEEEEeCCCC
Q 042421 125 NN----SFQNFRAQHTARIY 140 (154)
Q Consensus 125 ~~----~~~~~~~~~i~r~~ 140 (154)
+. .-.++++.++++..
T Consensus 79 l~~~~~~~~~vrv~~iG~~~ 98 (227)
T 2vg0_A 79 VEEICAPANHWSVRTVGDLG 98 (227)
T ss_dssp HHHHTCTTTCCEEEEESCGG
T ss_pred HHHHhccccCeEEEecCChh
Confidence 22 13567888887643
No 42
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=53.83 E-value=12 Score=27.28 Aligned_cols=58 Identities=7% Similarity=-0.005 Sum_probs=41.0
Q ss_pred eeeEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHH-HhCCceEEEeccH
Q 042421 40 VVGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVAL-RAGLASVLLESDC 97 (154)
Q Consensus 40 ~~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~-~~~~~~v~iesDs 97 (154)
....|+.+++.+|++..+...........+-||-.|+..+...-. ...+..+.+.+|.
T Consensus 208 ~f~VGAAl~~~dG~i~tG~NvEnasy~~tlCAEr~Ai~~av~~G~~~~~i~~i~vv~~~ 266 (294)
T 1ctt_A 208 KSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKA 266 (294)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEECT
T ss_pred CCceEEEEEeCCCCEEEEEeeecCCCCCccCHHHHHHHHHHHcCCCcCCEEEEEEEecC
Confidence 567899999999988776554443445678899999988875311 1346788887765
No 43
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=53.58 E-value=39 Score=23.40 Aligned_cols=50 Identities=14% Similarity=0.061 Sum_probs=35.3
Q ss_pred cCCCeeeEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhC
Q 042421 36 VQKQVVGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAG 87 (154)
Q Consensus 36 ~~~~~~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~ 87 (154)
...+.+.=|.+|.|.+|.+......... ...+..|++-.+.||+++.+.|
T Consensus 141 ~~~g~~~R~tFiIDp~g~Ir~~~~~~~~--~gr~~~EvLr~l~aLQ~~~~~~ 190 (219)
T 3tue_A 141 ESQGVAYRGLFIIDPHGMLRQITVNDMP--VGRSVEEVLRLLEAFQFVEKHG 190 (219)
T ss_dssp TTTTEECEEEEEECTTSBEEEEEEECTT--CCCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCeeEEEEEEECCCCeEEEEEEecCC--CCCCHHHHHHHHHHhhhHHhcC
Confidence 3445555678888999988765433232 3457789999999999987765
No 44
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=53.31 E-value=31 Score=25.06 Aligned_cols=52 Identities=12% Similarity=-0.065 Sum_probs=34.2
Q ss_pred eEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhCCceEEEeccH
Q 042421 42 GLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESDC 97 (154)
Q Consensus 42 g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesDs 97 (154)
-+|+| -|.+|++-. ...++ ...-..+-+.++.+-++++.++|++.|.++.=|
T Consensus 58 HVAII-MDGN~RwAk--~rgl~-r~~GH~~G~~~l~~iv~~c~~lGI~~LTlYaFS 109 (284)
T 2vg3_A 58 HVAIV-MDGNGRWAT--QRGLA-RTEGHKMGEAVVIDIACGAIELGIKWLSLYAFS 109 (284)
T ss_dssp EEEEE-CCCHHHHHH--HTTCC-HHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred EEEEE-ecCChHHHH--HcCCc-hhHHHHHHHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 44444 477766522 11121 123445667889999999999999999998744
No 45
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=50.58 E-value=52 Score=22.70 Aligned_cols=48 Identities=17% Similarity=0.067 Sum_probs=35.0
Q ss_pred CCeeeEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhC
Q 042421 38 KQVVGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAG 87 (154)
Q Consensus 38 ~~~~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~ 87 (154)
.+.+-=|.+|.|.+|.+......... ...+..|++-++.|||+..+.|
T Consensus 139 ~g~~~R~tFiID~~G~Ir~~~v~~~~--~grn~dEiLr~l~AlQ~~~~~~ 186 (216)
T 3sbc_A 139 EGVALRGLFIIDPKGVIRHITINDLP--VGRNVDEALRLVEAFQWTDKNG 186 (216)
T ss_dssp TTEECEEEEEECTTSBEEEEEEECTT--BCCCHHHHHHHHHHHHHHHHHC
T ss_pred CCceeeEEEEECCCCeEEEEEEcCCC--CCCCHHHHHHHHHHhhhHhhcC
Confidence 44555678888999988765433222 3457889999999999998765
No 46
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=49.43 E-value=23 Score=23.34 Aligned_cols=53 Identities=8% Similarity=0.070 Sum_probs=34.5
Q ss_pred eeEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhCCceEEEecc
Q 042421 41 VGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESD 96 (154)
Q Consensus 41 ~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesD 96 (154)
...|+.++..+|+++.+..- ......+-||-.|+..++..- ...+..+.+-+|
T Consensus 51 f~VGAAll~~dG~i~tG~NV--En~~~~lCAEr~Ai~~Avs~G-~~~~~ai~vv~~ 103 (158)
T 3oj6_A 51 YSVASAAISDDGRVFSGVNV--YHFNGGPCAELVVLGVAAAAG-ATKLTHIVAIAN 103 (158)
T ss_dssp SCEEEEEEETTSCEEEEECC--CCTTTCCCHHHHHHHHHHHTT-CCCEEEEEEEET
T ss_pred CcEEEEEEeCCCCEEEEEcc--ccCCccccHHHHHHHHHHHhC-CCceEEEEEEeC
Confidence 46899999999998876543 234456788988888776421 123455555544
No 47
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0
Probab=48.75 E-value=7.2 Score=27.73 Aligned_cols=21 Identities=19% Similarity=0.034 Sum_probs=17.1
Q ss_pred HHHHHHhCCceEEEeccHHHH
Q 042421 80 MKVALRAGLASVLLESDCLEV 100 (154)
Q Consensus 80 L~~a~~~~~~~v~iesDs~~v 100 (154)
.+.+......++.+|||+.++
T Consensus 180 ~~~v~~ip~drlLlETD~P~~ 200 (254)
T 3gg7_A 180 AALIRSMPRDRVLTETDGPFL 200 (254)
T ss_dssp HHHHHHSCGGGEEECCCTTTS
T ss_pred HHHHHHcCCCeEEEeCCCCcc
Confidence 456667788999999999864
No 48
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=48.60 E-value=48 Score=23.46 Aligned_cols=49 Identities=10% Similarity=-0.052 Sum_probs=33.1
Q ss_pred EEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhCCceEEEeccH
Q 042421 46 VIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESDC 97 (154)
Q Consensus 46 vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesDs 97 (154)
+|-|.+|++-. ...++ ...-..+-+.++.+-++++.++|++.+.+|.=|
T Consensus 21 iImDGN~RwAk--~~gl~-~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFS 69 (245)
T 2d2r_A 21 IIMDGNGRWAK--LKNKA-RAYGHKKGVKTLKDITIWCANHKLECLTLYAFS 69 (245)
T ss_dssp EECCCHHHHHH--TTTCC-HHHHHHHHHHHHHHHHHHHHTTTCSEEEEECC-
T ss_pred EEecCchHHHH--HCCCC-hhhhHHHHHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 44477776632 11121 223455667889999999999999999999755
No 49
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=45.05 E-value=34 Score=27.04 Aligned_cols=80 Identities=8% Similarity=-0.158 Sum_probs=45.4
Q ss_pred CCCcEEEEeceeEecCCCeeeEEEEEecCCCceEeeccccccccchhHHHHHHH-HHHHHHHHHH--hCC-ceEEE-ecc
Q 042421 22 PIGWLKINVDVVVDVQKQVVGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAA-IKWGMKVALR--AGL-ASVLL-ESD 96 (154)
Q Consensus 22 ~~g~~k~n~Dgs~~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~A-l~~aL~~a~~--~~~-~~v~i-esD 96 (154)
+.--+.+++|+|-. +.+|+|+..+.+.........-+..-...+-|++| +..+|+.-.- .|- -++++ .+|
T Consensus 323 ~~~~~~l~~das~~-----g~~g~vl~q~~~~~~~~~~~~~~~~y~~~e~e~la~vv~~l~~~~~~l~g~~p~~~vp~~~ 397 (557)
T 2zd1_A 323 PSKDLIAEIQKQGQ-----GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQK 397 (557)
T ss_dssp TTSCCEEEEEEEET-----TEEEEEEEEETTEEEEEEEEECCSCSEECHHHHHHHHHHHHHHHHHHHHSSCCEEEESBCH
T ss_pred CCCCEEEEEecCCC-----CcEEEEEecCCCceeeeeecccccccCCChHHHHHHHHHHhhhhheEEeCCCCCEECCCcH
Confidence 34457899998742 35688887765543322111112222345678888 8888876543 343 24555 788
Q ss_pred HHHHHHHHhc
Q 042421 97 CLEVVELVNN 106 (154)
Q Consensus 97 s~~vi~~i~~ 106 (154)
.+.+..+...
T Consensus 398 ~~~~~~~~~~ 407 (557)
T 2zd1_A 398 ETWETWWTEY 407 (557)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHhhhc
Confidence 8765554433
No 50
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=37.09 E-value=32 Score=24.49 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=37.1
Q ss_pred eEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhCCceEEEeccH
Q 042421 42 GLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESDC 97 (154)
Q Consensus 42 g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesDs 97 (154)
-+|+ |-|.||++-.. ..++ ...-..+=+.++..-++++.++|++.|.++.=|
T Consensus 20 HVAi-IMDGNrRwAk~--rgl~-r~~GH~~G~~~l~~i~~~c~~lGI~~lTlYaFS 71 (253)
T 3sgv_B 20 HVAI-IMDGNGRWAKK--QGKI-RAFGHKAGAKSVRRAVSFAANNGIEALTLYAFS 71 (253)
T ss_dssp EEEE-EECCHHHHHHH--TTCC-HHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC-
T ss_pred EEEE-EecCcHHHHHH--CCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEc
Confidence 3444 44888877432 2232 345677888899999999999999999999644
No 51
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=34.65 E-value=28 Score=26.02 Aligned_cols=35 Identities=20% Similarity=0.092 Sum_probs=24.6
Q ss_pred eEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHH
Q 042421 42 GLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGM 80 (154)
Q Consensus 42 g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL 80 (154)
-+|+||.+ +|+++..+.... ....+||..|+..+.
T Consensus 37 ~vGaviv~-~g~ii~~g~n~~---~~~~HAE~~Ai~~a~ 71 (360)
T 2hxv_A 37 PVGAVVVK-DGRIIAEGFHPY---FGGPHAERMAIESAR 71 (360)
T ss_dssp CCEEEEEE-TTEEEEEEECCS---TTSCCHHHHHHHHHH
T ss_pred CEEEEEEE-CCEEEEEEeCCC---CCCcCHHHHHHHHHH
Confidence 46667765 688887665433 235799999999883
No 52
>1sn9_A BBAT, tetrameric beta-BETA-alpha mini-protein; protein design, domain swapping, oligomerization, de novo protein; HET: DBZ; 1.20A {Synthetic} SCOP: k.14.1.1 PDB: 1sna_A* 1sne_A* 1xof_B* 1xof_A*
Probab=34.59 E-value=21 Score=15.31 Aligned_cols=10 Identities=20% Similarity=0.062 Sum_probs=7.3
Q ss_pred HHHHHHHHhh
Q 042421 142 SAAHALGFRV 151 (154)
Q Consensus 142 ~~Ad~LA~~a 151 (154)
..||+||+.-
T Consensus 8 dfadelakll 17 (26)
T 1sn9_A 8 DFADELAKLL 17 (26)
T ss_dssp CHHHHHHHHH
T ss_pred chHHHHHHHH
Confidence 4688888763
No 53
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=34.41 E-value=33 Score=23.10 Aligned_cols=14 Identities=29% Similarity=0.226 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHH
Q 042421 68 VAMAEAAAIKWGMK 81 (154)
Q Consensus 68 ~~~AE~~Al~~aL~ 81 (154)
..+||..|+..+-+
T Consensus 102 ~~HAE~~AI~~a~~ 115 (193)
T 1vq2_A 102 EIHAELNAILFAAE 115 (193)
T ss_dssp CBCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 45899999998754
No 54
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=32.61 E-value=33 Score=25.70 Aligned_cols=37 Identities=16% Similarity=0.083 Sum_probs=25.7
Q ss_pred eeEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHH
Q 042421 41 VGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMK 81 (154)
Q Consensus 41 ~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~ 81 (154)
.-+|+||.+ +|+++..+..... ...+||..|+..+-+
T Consensus 36 ~~vGaviv~-~g~ii~~g~n~~~---~~~HAE~~Ai~~a~~ 72 (373)
T 2b3z_A 36 PLVGAVVVK-DGQIVGMGAHLKY---GEAHAEVHAIHMAGA 72 (373)
T ss_dssp CCCEEEEES-SSSEEEEEECCST---TSCCHHHHHHHHHGG
T ss_pred CcEEEEEEE-CCEEEEEEeCCCC---CCcCHHHHHHHHhhH
Confidence 356777775 6888876654332 357999999988643
No 55
>3msh_A Hepatitis B virus X-interacting protein; alpha-beta proteins, profilin-like fold, roadblock/LC7 domai superfamily, protein binding; HET: PG4; 1.51A {Homo sapiens} PDB: 3ms6_A*
Probab=30.57 E-value=91 Score=18.75 Aligned_cols=53 Identities=17% Similarity=0.043 Sum_probs=31.6
Q ss_pred eeeEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhC-----CceEEEeccHHH
Q 042421 40 VVGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAG-----LASVLLESDCLE 99 (154)
Q Consensus 40 ~~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~-----~~~v~iesDs~~ 99 (154)
.+-.|+++-|..|--+.+.- ..+...|-+.+.+ .+.|..+. .-.|.+|+|+..
T Consensus 16 pgvvGvlc~D~qGLcLg~~G-----~~s~~~AG~i~~l--a~~AakL~p~~~~~P~I~LEsDs~~ 73 (99)
T 3msh_A 16 PSIVGVLCTDSQGLNLGCRG-----TLSDEHAGVISVL--AQQAAKLTSDPTDIPVVCLESDNGN 73 (99)
T ss_dssp TTEEEEEEECTTCCEEEEEE-----TCCGGGHHHHHHH--HHHHHHTCCCSSCCCCEEEEETTEE
T ss_pred CCcEEEEEECCCCCcccccC-----CCCcccchHHHHH--HHHHHhcCCCCCCCCEEEEEeCCce
Confidence 45678999999997776532 2233344333332 23444443 348999999863
No 56
>3qb8_A A654L protein; GNAT N-acetyltransferase, acetyltransferase, COA, spermine, spermidine, transferase; HET: COA; 1.50A {Paramecium bursaria chlorella virus 1}
Probab=29.71 E-value=83 Score=19.81 Aligned_cols=33 Identities=6% Similarity=0.100 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhCCceEEEeccHHHHHHHHhcC
Q 042421 75 AIKWGMKVALRAGLASVLLESDCLEVVELVNNR 107 (154)
Q Consensus 75 Al~~aL~~a~~~~~~~v~iesDs~~vi~~i~~~ 107 (154)
.+..+++.+.+.|+..+.+++++...+....+.
T Consensus 128 Ll~~~~~~a~~~g~~~i~l~~~n~~a~~~y~k~ 160 (197)
T 3qb8_A 128 LLKKTIEESSSHGFKYIYGDCTNIISQNMFEKH 160 (197)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHC
Confidence 355677888889999999999888888877663
No 57
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=29.32 E-value=38 Score=25.74 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=25.4
Q ss_pred eeEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHH
Q 042421 41 VGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGM 80 (154)
Q Consensus 41 ~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL 80 (154)
..+|+||.+ +|+++..+.... ....+||..|+..+-
T Consensus 52 ~~vGaviv~-~g~ii~~g~n~~---~g~~HAE~~Ai~~a~ 87 (402)
T 2g6v_A 52 PNVGCVIVK-DGEIVGEGYHQR---AGEPHAEVHALRMAG 87 (402)
T ss_dssp CCCEEEEEE-TTEEEEEEECCC---TTSCCHHHHHHHHHG
T ss_pred CCEEEEEEE-CCEEEEEEeCCC---CCccHHHHHHHHHhh
Confidence 357777776 688887765443 246799999998763
No 58
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=27.98 E-value=65 Score=23.42 Aligned_cols=53 Identities=15% Similarity=0.051 Sum_probs=34.3
Q ss_pred eeeEEEEEecCCCceEeeccccccc--cchhHHHHHHHHHHHHHHHHHhCCceEEE
Q 042421 40 VVGLEVVIRDEKDNCIAAAVNTTKY--FGNVAMAEAAAIKWGMKVALRAGLASVLL 93 (154)
Q Consensus 40 ~~g~G~vird~~g~~~~~~~~~~~~--~~s~~~AE~~Al~~aL~~a~~~~~~~v~i 93 (154)
....|++++..+|++..+..-.... ..-.+.||-.|+..+... -...+..|.+
T Consensus 70 ~f~VGAall~~dG~i~~G~NvEnas~~~~~t~CAEr~Ai~~A~~~-G~~~~~~iav 124 (294)
T 1ctt_A 70 NFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLS-GEKALAAITV 124 (294)
T ss_dssp CCCCEEEEEETTSCEEEEECBCCTTSCGGGCBCHHHHHHHHHHHT-TCCCEEEEEE
T ss_pred CCcEEEEEEeCCCCEEEEEcCCccCccCCCccCHHHHHHHHHHHc-CCCcEEEEEE
Confidence 5678999999999888665432222 123579999999888753 1223455555
No 59
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=27.80 E-value=51 Score=23.45 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=35.0
Q ss_pred eEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhCCceEEEeccH
Q 042421 42 GLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESDC 97 (154)
Q Consensus 42 g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesDs 97 (154)
-+|+ |-|.+|++-.. ..++ ...-..+-+.++.+-++++.++|++.|.++.=|
T Consensus 20 HVAi-ImDGN~RwAk~--~gl~-r~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFS 71 (253)
T 3qas_B 20 HVAI-IMDGNGRWAKK--QGKI-RAFGHKAGAKSVRRAVSFAANNGIEALTLYAFS 71 (253)
T ss_dssp EEEE-ECCCHHHHHHH--TTCC-HHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred EEEE-EecCCHHHHHH--cCCC-hhhhHHHHHHHHHHHHHHHHHCCCCEEEEEEec
Confidence 4444 44877766321 1121 223455667889999999999999999999744
No 60
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Probab=26.79 E-value=19 Score=26.02 Aligned_cols=19 Identities=21% Similarity=0.165 Sum_probs=14.8
Q ss_pred HHHHhCCceEEEeccHHHH
Q 042421 82 VALRAGLASVLLESDCLEV 100 (154)
Q Consensus 82 ~a~~~~~~~v~iesDs~~v 100 (154)
.+...+..++.+|||+.++
T Consensus 195 ~v~~ip~drlLlETD~P~l 213 (287)
T 3rcm_A 195 LVGNIPEGRLMLESDAPYL 213 (287)
T ss_dssp HHTTSCTTSEEECCCTTSC
T ss_pred HHHhcCCccEEEeccCCcc
Confidence 3445688999999999764
No 61
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=26.67 E-value=42 Score=23.82 Aligned_cols=53 Identities=8% Similarity=0.009 Sum_probs=35.0
Q ss_pred eEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhCCceEEEeccHH
Q 042421 42 GLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAGLASVLLESDCL 98 (154)
Q Consensus 42 g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~~~~v~iesDs~ 98 (154)
-+|+|+ |.+|++-.. ..++ ...-..+-+.++.+-++++.++|++.|.++.=|.
T Consensus 23 HVAiIm-DGN~RwA~~--~gl~-~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFSt 75 (249)
T 1f75_A 23 HIAIIM-DGNGRWAKQ--KKMP-RIKGHYEGMQTVRKITRYASDLGVKYLTLYAFST 75 (249)
T ss_dssp EEEEEE-CCHHHHHHH--TTCC-HHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC--
T ss_pred EEEEEe-cCCcHHHHH--CCCC-hhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEecc
Confidence 455444 877766321 1121 2234566678899999999999999999998553
No 62
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=25.94 E-value=1.3e+02 Score=18.96 Aligned_cols=50 Identities=26% Similarity=0.096 Sum_probs=30.5
Q ss_pred EEEecCCCceEeeccccccc-----cchhHHHHHHHHHHHHHHHHHhCCceEEEec
Q 042421 45 VVIRDEKDNCIAAAVNTTKY-----FGNVAMAEAAAIKWGMKVALRAGLASVLLES 95 (154)
Q Consensus 45 ~vird~~g~~~~~~~~~~~~-----~~s~~~AE~~Al~~aL~~a~~~~~~~v~ies 95 (154)
+-+.|..|..+...+.-.-+ -+++..| .+|...+.+.+.++|+..|.|.-
T Consensus 30 vtiTd~~G~~~~~~SaG~~gfKg~rk~tp~AA-~~aa~~~~~~~~~~Gi~~v~V~v 84 (129)
T 2vqe_K 30 VTITDPDGNPITWSSGGVIGYKGSRKGTPYAA-QLAALDAAKKAMAYGMQSVDVIV 84 (129)
T ss_dssp EEEECTTSCEEEECCTTTTTCCSGGGGSHHHH-HHHHHHHHHHHHTTTCCEEEEEE
T ss_pred EEEEcCCCCEEEEEeccceeEcCCCcCCHHHH-HHHHHHHHHHHHHhCCeEEEEEE
Confidence 45668888776554322111 2334333 34556677788899999888864
No 63
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=25.72 E-value=1.9e+02 Score=20.91 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=27.1
Q ss_pred EEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHH
Q 042421 46 VIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALR 85 (154)
Q Consensus 46 vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~ 85 (154)
++|+.+|--+.+ +....+.....++.++..+|+.+.+
T Consensus 177 tvRe~DGLA~SS---RN~yLs~~eR~~A~~L~~aL~~~~~ 213 (285)
T 3mxt_A 177 IIREEDGLAKSS---RNVYLSKEERKASLAISQSIFLAEK 213 (285)
T ss_dssp CCBCTTSCBCCG---GGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceECCCCCchhh---ccccCCHHHHHHHHHHHHHHHHHHH
Confidence 678888855433 3445567788899999999998865
No 64
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=25.64 E-value=1.2e+02 Score=18.66 Aligned_cols=50 Identities=16% Similarity=0.120 Sum_probs=30.9
Q ss_pred EEEecCCCceEeecccc---cc--ccchhHHHHHHHHHHHHHHHHHhCCceEEEec
Q 042421 45 VVIRDEKDNCIAAAVNT---TK--YFGNVAMAEAAAIKWGMKVALRAGLASVLLES 95 (154)
Q Consensus 45 ~vird~~g~~~~~~~~~---~~--~~~s~~~AE~~Al~~aL~~a~~~~~~~v~ies 95 (154)
+-+.|..|..+...+.- +. .-+++..|.. |...+.+.+.++|++.|.|.-
T Consensus 20 vtiTD~~G~~i~~~S~G~~gfKg~rk~tp~AA~~-aa~~~~~~~~~~Gi~~v~v~v 74 (117)
T 3r8n_K 20 VTITDRQGNALGWATAGGSGFRGSRKSTPFAAQV-AAERCADAVKEYGIKNLEVMV 74 (117)
T ss_dssp EEEECTTSCCSEEEETGGGSCCGGGGSSHHHHHH-HHHHHHHHHTTSCCCEEEEEE
T ss_pred EEEEcCCCCEEEEEcCCccccCCCccCCHHHHHH-HHHHHHHHHHHhCCcEEEEEE
Confidence 45567777765443211 11 1245555544 556777888999999888864
No 65
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=25.49 E-value=1.4e+02 Score=19.35 Aligned_cols=63 Identities=6% Similarity=-0.054 Sum_probs=36.3
Q ss_pred cEEEEeceeEecCCCeeeEEEEEecCCCc-eEeeccccccc-----cchhHHHHHHHHHHHHHHHHHhCCceEEEe
Q 042421 25 WLKINVDVVVDVQKQVVGLEVVIRDEKDN-CIAAAVNTTKY-----FGNVAMAEAAAIKWGMKVALRAGLASVLLE 94 (154)
Q Consensus 25 ~~k~n~Dgs~~~~~~~~g~G~vird~~g~-~~~~~~~~~~~-----~~s~~~AE~~Al~~aL~~a~~~~~~~v~ie 94 (154)
+-.+++-+++++- =+-+.|..|. ++...+..... -+++..| .+|...+.+.+.++|+..|.|.
T Consensus 28 ~gi~hI~asfNNT------iVtiTD~~G~~~~~~ssgg~~~k~~r~ksTpyAA-q~aa~~~a~~a~e~Gi~~v~V~ 96 (151)
T 2xzm_K 28 FGVCHIMATWNDT------FIHVTDLSGRETLVRVTGGMKVKADREESSPYAA-MQAAIDVVNRCKELKINALHIK 96 (151)
T ss_dssp EEEEEEEBCSSCB------CCEEECTTCCSEEEECCHHHHCSSGGGGSCHHHH-HHHHHHHHHHHHHHTCCEEEEE
T ss_pred eeEEEEEccCCCE------EEEEECCCCCEEEEEecCcceEeCCCCcCCHHHH-HHHHHHHHHHHHHcCCeEEEEE
Confidence 4455555555432 1345677775 43333222211 2345555 4456677888899999888886
No 66
>2g3a_A Acetyltransferase; structural genomics, PSI, protein structu initiative, midwest center for structural genomics, MCSG; 1.90A {Agrobacterium tumefaciens str} SCOP: d.108.1.1
Probab=24.91 E-value=1.2e+02 Score=18.20 Aligned_cols=31 Identities=6% Similarity=0.111 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhCCceEEEeccHHHHHHHHhc
Q 042421 76 IKWGMKVALRAGLASVLLESDCLEVVELVNN 106 (154)
Q Consensus 76 l~~aL~~a~~~~~~~v~iesDs~~vi~~i~~ 106 (154)
+...++.+.+.|+..+.+++++...+....+
T Consensus 97 l~~~~~~~~~~g~~~i~l~~~n~~a~~~y~k 127 (152)
T 2g3a_A 97 LAMAEEEARKRGCMGAYIDTMNPDALRTYER 127 (152)
T ss_dssp HHHHHHHHHHTTCCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEEecCccHHHHHHH
Confidence 4456677888899999999975555555444
No 67
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=24.21 E-value=2.3e+02 Score=21.26 Aligned_cols=51 Identities=8% Similarity=0.109 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhCCceEEEeccHHHHHHHHhcCCCCchhHHHHHHHHHHHhhcCCceEEEEe
Q 042421 76 IKWGMKVALRAGLASVLLESDCLEVVELVNNRCSSMAEISWMISEILEMNNSFQNFRAQHT 136 (154)
Q Consensus 76 l~~aL~~a~~~~~~~v~iesDs~~vi~~i~~~~~~~~~~~~li~~i~~l~~~~~~~~~~~i 136 (154)
++.|.++|.+.+-++|.+ +.+.+.-...-+.+.+-+++..+.|+.+.+.|.
T Consensus 172 ar~AFe~A~~r~~kkVt~----------v~KaNvlk~s~glf~~~~~eva~eypdv~~~~~ 222 (364)
T 3flk_A 172 LKYAFDLAEKRERKHVTS----------ATKSNGMAISMPYWDKRTEAMAAHYPHVSWDKQ 222 (364)
T ss_dssp HHHHHHHHHHSSSCEEEE----------EECTTTSTTHHHHHHHHHHHHHTTCTTCEEEEE
T ss_pred HHHHHHHHHhcCCCeEEE----------EECcchhhhHHHHHHHHHHHHHHHCCCceEEee
Confidence 577899999988778887 333222222222333445566678999988775
No 68
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.50A {Saccharomyces cerevisiae}
Probab=23.77 E-value=1.1e+02 Score=23.29 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=16.9
Q ss_pred HHHHHHhCCceEEEeccHHH
Q 042421 80 MKVALRAGLASVLLESDCLE 99 (154)
Q Consensus 80 L~~a~~~~~~~v~iesDs~~ 99 (154)
++.+......++.+|||+.+
T Consensus 287 ~e~v~~iPldrLLlETDaP~ 306 (401)
T 3e2v_A 287 LAVVKQIPTERLLLETDAPW 306 (401)
T ss_dssp HHHHHTSCGGGEEECCCTTS
T ss_pred HHHHHhCCchhEEEecCCCC
Confidence 46677888999999999993
No 69
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=23.76 E-value=1.7e+02 Score=19.68 Aligned_cols=42 Identities=5% Similarity=0.010 Sum_probs=30.1
Q ss_pred EEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhC
Q 042421 44 EVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAG 87 (154)
Q Consensus 44 G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~ 87 (154)
+.+|.|.+|.+......... ......|++..+.+|+...+.+
T Consensus 130 ~~flID~~G~I~~~~~~~~~--~g~~~~ell~~i~~lq~~~~~~ 171 (220)
T 1xcc_A 130 CLFFISPEKKIKATVLYPAT--TGRNAHEILRVLKSLQLTYTTP 171 (220)
T ss_dssp EEEEECTTSBEEEEEEECTT--BCCCHHHHHHHHHHHHHHHHSS
T ss_pred eEEEECCCCEEEEEEecCCC--CCCCHHHHHHHHHHHHhhhcCC
Confidence 56788999998876543221 1235679999999999887655
No 70
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=23.15 E-value=1e+02 Score=22.44 Aligned_cols=57 Identities=11% Similarity=-0.013 Sum_probs=36.9
Q ss_pred eeeEEEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHH-HhCCceEEEecc
Q 042421 40 VVGLEVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVAL-RAGLASVLLESD 96 (154)
Q Consensus 40 ~~g~G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~-~~~~~~v~iesD 96 (154)
....|+.++..+|++..+..-..-.....+-||-.|+..++..-. ...+..+.+-.|
T Consensus 212 ~~~vGAAl~t~dG~iytG~nvEnAay~~slcAEr~Al~~av~~G~~~~~i~aiv~v~~ 269 (298)
T 4eg2_A 212 QNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAMMMGESFEDIEAAALVES 269 (298)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEEC
T ss_pred CCCeEEEEEeCCCCEEEEEeeeccccCCCCCHHHHHHHHHHHCCCCccCeEEEEEEeC
Confidence 457899999999998776543332234467788888887765321 123667777655
No 71
>2zzj_A Glucuronan lyase A; beta-jelly roll; HET: CIT; 1.80A {Trichoderma reesei}
Probab=22.74 E-value=29 Score=24.53 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=18.8
Q ss_pred CCcccCCCCCcEEEEeceeEec
Q 042421 15 EDQWQSPPIGWLKINVDVVVDV 36 (154)
Q Consensus 15 ~~~W~~p~~g~~k~n~Dgs~~~ 36 (154)
..+|++...|++++.+||-..-
T Consensus 157 hvkWs~d~~Gf~~vW~dG~~v~ 178 (238)
T 2zzj_A 157 QIKWASDNTGYFKIWFDGAKVH 178 (238)
T ss_dssp EEEECSSTTEEEEEEETTEEEE
T ss_pred EEEEeCCCCcEEEEEECCEEEE
Confidence 4579999999999999997764
No 72
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=22.73 E-value=2.4e+02 Score=21.04 Aligned_cols=52 Identities=12% Similarity=0.241 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCceEEEeccHHHHHHHHhcCCCCchhHHHHHHHHHHHhhcCCceEEEEeC
Q 042421 76 IKWGMKVALRAGLASVLLESDCLEVVELVNNRCSSMAEISWMISEILEMNNSFQNFRAQHTA 137 (154)
Q Consensus 76 l~~aL~~a~~~~~~~v~iesDs~~vi~~i~~~~~~~~~~~~li~~i~~l~~~~~~~~~~~i~ 137 (154)
++.|.++|.+.+-++|.+ +.+.+.-...-+.+.+-+++...+|+.+.+.|..
T Consensus 169 ar~AFe~A~~r~rkkVt~----------v~KaNvlk~sdglf~~~~~eva~eypdI~~~~~~ 220 (354)
T 3blx_B 169 IRYAFEYARAIGRPRVIV----------VHKSTIQRLADGLFVNVAKELSKEYPDLTLETEL 220 (354)
T ss_dssp HHHHHHHHHHTTCSEEEE----------EESCTTTCHHHHHHHHHHHHHGGGCTTSEEEEEE
T ss_pred HHHHHHHHHhcCCCeEEE----------EECCcchHhHHHHHHHHHHHHHHHCCCceEEEEE
Confidence 477999999987778887 3333222222233444455666788888877653
No 73
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=22.03 E-value=1.8e+02 Score=20.22 Aligned_cols=42 Identities=14% Similarity=-0.001 Sum_probs=29.6
Q ss_pred EEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhC
Q 042421 44 EVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAG 87 (154)
Q Consensus 44 G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~ 87 (154)
+.+|.|.+|.+......... ...+..|++.++.+|+.....+
T Consensus 126 ~~fIID~dG~I~~~~~~~~~--~gr~~~Ellr~I~alq~~~~~~ 167 (249)
T 3a2v_A 126 GVFIVDARGVIRTMLYYPME--LGRLVDEILRIVKALKLGDSLK 167 (249)
T ss_dssp EEEEECTTSBEEEEEEECTT--BCCCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEECCCCeEEEEEecCCc--ccchhHHHHHHHHHHHhccccC
Confidence 56788999998876543221 1235789999999999876654
No 74
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=21.55 E-value=2e+02 Score=19.66 Aligned_cols=42 Identities=7% Similarity=0.047 Sum_probs=29.4
Q ss_pred EEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhC
Q 042421 44 EVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAG 87 (154)
Q Consensus 44 G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~ 87 (154)
+.+|.|.+|.+......... ......|++..+.+|+...+.+
T Consensus 129 ~~fiID~~G~I~~~~~~~~~--~gr~~~eilr~l~~Lq~~~~~~ 170 (233)
T 2v2g_A 129 AVFIIGPDKKLKLSILYPAT--TGRNFSEILRVIDSLQLTAQKK 170 (233)
T ss_dssp EEEEECTTSBEEEEEEECTT--BCCCHHHHHHHHHHHHHHHHSS
T ss_pred eEEEECCCCEEEEEEecCCC--CCCCHHHHHHHHHHHHhhccCC
Confidence 56788999998876543221 1124679999999999876643
No 75
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1}
Probab=21.10 E-value=33 Score=25.27 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=17.7
Q ss_pred HHHHHHhCCceEEEeccHHHH
Q 042421 80 MKVALRAGLASVLLESDCLEV 100 (154)
Q Consensus 80 L~~a~~~~~~~v~iesDs~~v 100 (154)
++.+......++.+||||.++
T Consensus 231 ~~~v~~iPldrlLlETDaP~l 251 (325)
T 3ipw_A 231 LNVMKQIPIERLHIETDCPYC 251 (325)
T ss_dssp HHHHTTSCGGGEEECCCTTSC
T ss_pred HHHHHhCCcccEEEeCCCccc
Confidence 456677889999999999876
No 76
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=20.87 E-value=2e+02 Score=19.40 Aligned_cols=42 Identities=5% Similarity=0.029 Sum_probs=29.5
Q ss_pred EEEEecCCCceEeeccccccccchhHHHHHHHHHHHHHHHHHhC
Q 042421 44 EVVIRDEKDNCIAAAVNTTKYFGNVAMAEAAAIKWGMKVALRAG 87 (154)
Q Consensus 44 G~vird~~g~~~~~~~~~~~~~~s~~~AE~~Al~~aL~~a~~~~ 87 (154)
+.+|.|.+|.+......... ......|++..+.+|+...+.+
T Consensus 133 ~~fiID~~G~I~~~~~~~~~--~gr~~~eil~~i~~l~~~~~~~ 174 (224)
T 1prx_A 133 VVFVFGPDKKLKLSILYPAT--TGRNFDEILRVVISLQLTAEKR 174 (224)
T ss_dssp EEEEECTTSBEEEEEECCTT--BCCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCEEEEEEecCCC--CCCCHHHHHHHHHHHHhhccCC
Confidence 56778999998876543221 1224689999999999876654
No 77
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.83 E-value=1e+02 Score=19.06 Aligned_cols=22 Identities=23% Similarity=0.042 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhCC
Q 042421 67 NVAMAEAAAIKWGMKVALRAGL 88 (154)
Q Consensus 67 s~~~AE~~Al~~aL~~a~~~~~ 88 (154)
.-.+||-.|.-.|++..+.+|+
T Consensus 71 rK~eAE~kAAA~AC~kLK~Lgl 92 (119)
T 2db2_A 71 KKIDAERQAAAAACQLFKGWGL 92 (119)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHHHHHcCc
Confidence 4578999999999999999985
Done!