BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042423
(344 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 224 bits (572), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 110/168 (65%), Positives = 130/168 (77%), Gaps = 2/168 (1%)
Query: 8 EPPTKGKVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQXXX 67
EPPT GKV++KTT G IDIELW KEAPKA RNF+QLCLE Y+DNTIFHR++ GF+VQ
Sbjct: 20 EPPTNGKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGD 79
Query: 68 XXXXXXXXESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRK 127
ESIYG F DEFHSRLRFN RGLVA ANAGS H NGSQFF +L R D L+ K
Sbjct: 80 PTGTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGS-HDNGSQFFFTLGRADELNNK 138
Query: 128 NTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVEVLWNPFED 175
+TIFGKVTGD+++N+LRL EVD D ++RP + P K+ S EVL+NPF+D
Sbjct: 139 HTIFGKVTGDTVYNMLRLSEVDIDDDERPHN-PHKIKSCEVLFNPFDD 185
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 128/211 (60%), Gaps = 24/211 (11%)
Query: 7 LEPPTKGKVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQXX 66
+ T+GKV++ T+ G +D+ELW +E P A RNFVQLCLEGY+ NTIFHR++K F+VQ
Sbjct: 16 FQGSTRGKVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGG 75
Query: 67 --XXXXXXXXXESIYGGNFADEFHSRLRFNHRGLVACANAG-------------SPHSNG 111
+ G F E H RL+F +RGLV AN G S +NG
Sbjct: 76 DPTGTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNG 135
Query: 112 SQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVEVLWN 171
+QFFI+L R D L+ T+FGKVTG +++NL++ +++ K DRP+ PP + SV+VLWN
Sbjct: 136 NQFFITLARADVLNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRPMT-PPFIKSVDVLWN 194
Query: 172 PFEDIVP-RAPSRPSIQTTTEAENKDIKKKA 201
PFED+VP R P P Q KD +K+A
Sbjct: 195 PFEDLVPRRLPDAPPAQ-------KDERKRA 218
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 93/151 (61%), Gaps = 5/151 (3%)
Query: 8 EPPTKGKVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQXXX 67
+PP V ++T+ G I +EL+ K APK +NF +L GY++ T FHRIIK F++Q
Sbjct: 10 QPP---NVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGD 66
Query: 68 XXXXXXXXESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRK 127
SIYG F DE H L+F G++A ANAG P +NGSQFF++L WLD K
Sbjct: 67 PTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAG-PDTNGSQFFVTLAPTQWLDGK 125
Query: 128 NTIFGKVTGDSIFNLLRLGEVDTDKNDRPLD 158
+TIFG+V I + R+G V+T+ DRP+D
Sbjct: 126 HTIFGRVC-QGIGMVNRVGMVETNSQDRPVD 155
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 93/151 (61%), Gaps = 5/151 (3%)
Query: 8 EPPTKGKVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQXXX 67
+PP V ++T+ G I +EL+ K APK +NF +L GY++ T FHRIIK F++Q
Sbjct: 10 QPP---NVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGD 66
Query: 68 XXXXXXXXESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRK 127
SIYG F DE H L+F G++A ANAG P +NGSQFF++L WLD K
Sbjct: 67 PTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAG-PDTNGSQFFVTLAPTQWLDGK 125
Query: 128 NTIFGKVTGDSIFNLLRLGEVDTDKNDRPLD 158
+TIFG+V I + R+G V+T+ DRP+D
Sbjct: 126 HTIFGRVC-QGIGMVNRVGMVETNSQDRPVD 155
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 93/151 (61%), Gaps = 5/151 (3%)
Query: 8 EPPTKGKVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQXXX 67
+PP V ++T+ G I +EL+ K APK +NF +L GY++ T FHRIIK F++Q
Sbjct: 10 QPP---NVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGD 66
Query: 68 XXXXXXXXESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRK 127
SIYG F DE H L+F G++A ANAG P +NGSQFF++L WLD K
Sbjct: 67 PTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAG-PDTNGSQFFVTLAPTQWLDGK 125
Query: 128 NTIFGKVTGDSIFNLLRLGEVDTDKNDRPLD 158
+TIFG+V I + R+G V+T+ DRP+D
Sbjct: 126 HTIFGRVC-QGIGMVNRVGMVETNSQDRPVD 155
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 96/158 (60%), Gaps = 3/158 (1%)
Query: 11 TKGKVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQXXXXXX 70
T I+ TT G I I L+ KE K V+NF + GY++N IFHR+IK F+VQ
Sbjct: 4 TPKSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSG 63
Query: 71 XXXXXESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTI 130
ESI+G F DEF L + +V+ AN G P++NGSQFFI+ C WLD K+T+
Sbjct: 64 DGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCG-PNTNGSQFFITTVPCPWLDFKHTV 122
Query: 131 FGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVEV 168
FGKVT S +L + +V TDK D+PL+ K+L++++
Sbjct: 123 FGKVTQGSKI-VLDIEKVRTDKRDKPLE-DIKILNIKI 158
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 87/145 (60%), Gaps = 3/145 (2%)
Query: 15 VIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQXXXXXXXXXX 74
I+ T+ G I +L+P E PK V NF GY++ FHRIIKGF++Q
Sbjct: 24 AIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMG 83
Query: 75 XESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKV 134
ESI+GG F DEFHS LR + ++ ANAGS ++NGSQFFI++ WLD K+T+FG+V
Sbjct: 84 GESIWGGEFEDEFHSTLRHDRPYTLSMANAGS-NTNGSQFFITVVPTPWLDNKHTVFGRV 142
Query: 135 TGDSIFNLLRLGEVDTD-KNDRPLD 158
T + + R+ V + K D+P +
Sbjct: 143 T-KGMEVVQRISNVKVNPKTDKPYE 166
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 114 bits (285), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 100/171 (58%), Gaps = 6/171 (3%)
Query: 7 LEPPTKGKVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQXX 66
L P G V + T G +++EL PK NF++LC + Y+D TIFHR I+ F++Q
Sbjct: 14 LVPRGSGYVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGG 73
Query: 67 XXXXXXXXXESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDR 126
ES +G F DEF L RG+++ AN+G P+SN SQFFI+ C +LD+
Sbjct: 74 DPTGTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSG-PNSNRSQFFITFRSCAYLDK 132
Query: 127 KNTIFGKVTGDSIFNLLRLGE-VDTD-KNDRPLDPPPKLLSVEVLWNPFED 175
K+TIFG+V G F++L E V++D K DRP + ++ + V +P+E+
Sbjct: 133 KHTIFGRVVGG--FDVLTAMENVESDPKTDRPKE-EIRIDATTVFVDPYEE 180
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 15 VIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQXXXXXXXXXX 74
V + T +G + EL+ + PKA +NF+ L GY+ NTIFH+ IKGF++Q
Sbjct: 19 VRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGKG 78
Query: 75 XESIYGGNFADEFHSRLRFNHRGLVACANAGS---PHSNGSQFFISLDRCDWLDRKNTIF 131
ESIYG F DE + L+++ RG+++ A+ G+ P++NGSQFFI+ L+ + IF
Sbjct: 79 GESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIF 138
Query: 132 GKVTGDSIFNLLRLGEVDTDKNDRPLD 158
GK+ D L L +DK+ +P+D
Sbjct: 139 GKLI-DGFETLNTLENCPSDKSHKPID 164
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 89/163 (54%), Gaps = 10/163 (6%)
Query: 15 VIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQXXXXXXXXXX 74
V + T G I IE++ + PK NF+ LC Y++ IFHR IKGF+VQ
Sbjct: 9 VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRG 68
Query: 75 XESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKV 134
SI+G F DE+ L+ N RG+V+ AN G P++NGSQFFI+ + LD K T+FGKV
Sbjct: 69 GNSIWGKKFEDEYSEYLKHNVRGVVSMANNG-PNTNGSQFFITYGKQPHLDMKYTVFGKV 127
Query: 135 TGDSIFNLLRLGEVD----TDKNDRPLDPPPKLLSVEVLWNPF 173
I L L E++ +K RPL+ + + + NPF
Sbjct: 128 ----IDGLETLDELEKLPVNEKTYRPLN-DVHIKDITIHANPF 165
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 89/163 (54%), Gaps = 10/163 (6%)
Query: 15 VIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQXXXXXXXXXX 74
V + T G I IE++ + PK NF+ LC Y++ IFHR IKGF+VQ
Sbjct: 3 VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRG 62
Query: 75 XESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKV 134
SI+G F DE+ L+ N RG+V+ AN G P++NGSQFFI+ + LD K T+FGKV
Sbjct: 63 GNSIWGKKFEDEYSEYLKHNVRGVVSMANNG-PNTNGSQFFITYGKQPHLDMKYTVFGKV 121
Query: 135 TGDSIFNLLRLGEVD----TDKNDRPLDPPPKLLSVEVLWNPF 173
I L L E++ +K RPL+ + + + NPF
Sbjct: 122 ----IDGLETLDELEKLPVNEKTYRPLN-DVHIKDITIHANPF 159
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Query: 12 KGKVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQXXXXXXX 71
+G + + T G ++EL+ +PK NF LC G++DNTIFHR+I F++Q
Sbjct: 38 RGYITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGT 97
Query: 72 XXXXESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIF 131
+SIYG F DE + L+ G+++ +N G P++N SQFFI+L LD K+TIF
Sbjct: 98 GKGGKSIYGEYFEDEINKELKHTGAGILSMSNNG-PNTNSSQFFITLAPLPHLDGKHTIF 156
Query: 132 GKVTGDSIFNLLRLGEVDTDKNDRPL 157
+V+ ++ + + V T ++P+
Sbjct: 157 ARVS-KNMTCIENIASVQTTATNKPI 181
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 86/169 (50%), Gaps = 22/169 (13%)
Query: 8 EPPTKGKVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEG----------------YFDN 51
P + T G I I L+ APK V NFV L +G ++D
Sbjct: 19 SPLATATATLHTNRGDIKIALFGNHAPKTVANFVGLA-QGTKDYSTQNASGGPSGPFYDG 77
Query: 52 TIFHRIIKGFLVQXXXXXXXXXXXESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNG 111
+FHR+I+GF++Q FADEFH L+F+ L+A ANAG P +NG
Sbjct: 78 AVFHRVIQGFMIQGGDPTGTGRGGPGY---KFADEFHPELQFDKPYLLAMANAG-PGTNG 133
Query: 112 SQFFISLDRCDWLDRKNTIFGKVT-GDSIFNLLRLGEVDTDKNDRPLDP 159
SQFFI++ + L+R++TIFG+V +S + + + TD NDRP DP
Sbjct: 134 SQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDP 182
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 92/176 (52%), Gaps = 15/176 (8%)
Query: 12 KGKVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQX------ 65
KG + + TT G ++IEL AP+A +F++LC YFD+TIFHR I+ F++Q
Sbjct: 6 KGYLRIVTTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELR 65
Query: 66 --XXXXXXXXXXESIY----GGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLD 119
SI G F DEF +RL G+++ AN G HSN S+FFI+
Sbjct: 66 QPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGK-HSNLSEFFITFK 124
Query: 120 RCDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVEVLWNPFED 175
C+ L+ K+TIFG+V G ++LR E PPK+ + V NPFED
Sbjct: 125 SCEHLNNKHTIFGRVVGG--LDVLRQWEKLETDKKDKPLKPPKVEEIIVFKNPFED 178
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 88/152 (57%), Gaps = 10/152 (6%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXXXXXXX-XXXXES 77
G I I L+ K+AP NF QLC G+ + ++IFHR+I+ F++Q +S
Sbjct: 26 GRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKS 85
Query: 78 IYGGNFADEFHSRLRFNH-RGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTG 136
IYG FADE L H G ++ ANAG P++NGSQFFI+ WLD ++ +FGKV
Sbjct: 86 IYGEKFADE---NLNVKHFVGALSMANAG-PNTNGSQFFITTAPTPWLDGRHVVFGKVL- 140
Query: 137 DSIFNLLRLGEVDTDKNDRPLDPPPKLLSVEV 168
D + +LR+ + T+ +DRP+ P + S E+
Sbjct: 141 DGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 80/147 (54%), Gaps = 12/147 (8%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCLEGY--------FDNTIFHRIIKGFLVQXXXXXXX-X 72
G + IEL+ PK NF Q C + + + FHR+IK F++Q
Sbjct: 25 GRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDG 84
Query: 73 XXXESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFG 132
SIY G FADE + +LR + GL++ AN+G P +NG QFFI+ +CDWLD K+ +FG
Sbjct: 85 TGVASIYRGPFADE-NFKLRHSAPGLLSMANSG-PSTNGCQFFITCSKCDWLDGKHVVFG 142
Query: 133 KVTGDSIFNLLRLGEVDTDKNDRPLDP 159
K+ D + + ++ V T N++P P
Sbjct: 143 KII-DGLLVMRKIENVPTGPNNKPKLP 168
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 87/152 (57%), Gaps = 10/152 (6%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXXXXXXX-XXXXES 77
G I I L+ K+AP NF QLC G+ + ++IFHR+I+ F++Q +S
Sbjct: 26 GRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKS 85
Query: 78 IYGGNFADEFHSRLRFNH-RGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTG 136
IYG FADE L H G ++ ANAG P++NGSQFFI+ WLD + +FGKV
Sbjct: 86 IYGEKFADE---NLNVKHFVGALSMANAG-PNTNGSQFFITTAPTPWLDGAHVVFGKVL- 140
Query: 137 DSIFNLLRLGEVDTDKNDRPLDPPPKLLSVEV 168
D + +LR+ + T+ +DRP+ P + S E+
Sbjct: 141 DGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 81/141 (57%), Gaps = 9/141 (6%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXXXXXXX-XXXXES 77
G I I L+ PK V NFV L +GY + +IFHR+IK F++Q S
Sbjct: 22 GRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMS 81
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVT-G 136
IYG F DE + +L+ G V+ ANAG P +NGSQFFI+L + WLD K+ +FGKV G
Sbjct: 82 IYGETFPDE-NFKLKHYGIGWVSMANAG-PDTNGSQFFITLTKPTWLDGKHVVFGKVLDG 139
Query: 137 DSIFNLLRLGEVDTDKNDRPL 157
++ + + L TD +DRPL
Sbjct: 140 MTVVHSIELQA--TDGHDRPL 158
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 81/141 (57%), Gaps = 9/141 (6%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXXXXXXXXXXXE-S 77
G I I L+ K PK V NFV L +GY + + FHR+IK F++Q S
Sbjct: 30 GRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQGGDITTGDGTGGVS 89
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVT-G 136
IYG F DE + +L+ G V+ ANAG P +NGSQFFI+L + WLD K+ +FGKV G
Sbjct: 90 IYGETFPDE-NFKLKHYGIGWVSMANAG-PDTNGSQFFITLTKPTWLDGKHVVFGKVIDG 147
Query: 137 DSIFNLLRLGEVDTDKNDRPL 157
++ + + L TD +DRPL
Sbjct: 148 MTVVHSIELQA--TDGHDRPL 166
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 79/133 (59%), Gaps = 8/133 (6%)
Query: 17 VKTTHGPIDIELWPKEAPKAVRNFVQLCL----EGYFDNTIFHRIIKGFLVQXX-XXXXX 71
+T G I L+ K+ PK +NF +LC EGY ++T FHRII F++Q
Sbjct: 17 AETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYREST-FHRIIPNFMIQGGDFTRGN 75
Query: 72 XXXXESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIF 131
SIYG FADE SR + + +G+++ ANAG P++NGSQFFI+ WLD K+ +F
Sbjct: 76 GTGGRSIYGDKFADENFSR-KHDKKGILSMANAG-PNTNGSQFFITTAVTSWLDGKHVVF 133
Query: 132 GKVTGDSIFNLLR 144
G+V + +++++
Sbjct: 134 GEVADEKSYSVVK 146
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 11/132 (8%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCLEGY--------FDNTIFHRIIKGFLVQXXXXXXXXX 73
G EL+ PK NF Q C Y + NTIFHR+IK F++Q
Sbjct: 74 GKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNG 133
Query: 74 XXE-SIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFG 132
SIYG F DE + ++ + GL++ AN+G P++NG QFFI+ +C+WLD KN +FG
Sbjct: 134 SGSLSIYGEKFDDE-NFDIKHDKEGLLSMANSG-PNTNGCQFFITTKKCEWLDGKNVVFG 191
Query: 133 KVTGDSIFNLLR 144
++ + LL+
Sbjct: 192 RIIDNDSLLLLK 203
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 67/118 (56%), Gaps = 8/118 (6%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLC----LEGYFDNTIFHRIIKGFLVQXX-XXXXXXXXXE 76
G I ++L PK +NF LC EGY +T FHRII GF+VQ
Sbjct: 42 GRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGST-FHRIIPGFMVQGGDYTAHNGTGGR 100
Query: 77 SIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKV 134
SIYG F DE + L+ G+++ AN G+ H+NGSQFFI+L + WLD K+ +FG+V
Sbjct: 101 SIYGEKFPDE-NFELKHTKEGILSMANCGA-HTNGSQFFITLGKTQWLDEKHVVFGEV 156
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 78/140 (55%), Gaps = 7/140 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXXXXXXX-XXXXES 77
G + L+ K PK V NFV L +G+ + N+ FHR+IK F++Q +S
Sbjct: 30 GRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKS 89
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGD 137
IYG F DE + +L+ G V+ ANAG +NGSQFFI+ + WLD K+ +FGKV +
Sbjct: 90 IYGERFPDE-NFKLKHYGPGWVSMANAGK-DTNGSQFFITTVKTAWLDGKHVVFGKVL-E 146
Query: 138 SIFNLLRLGEVDTDKNDRPL 157
+ + ++ TD D+PL
Sbjct: 147 GMEVVRKVESTKTDSRDKPL 166
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 79/140 (56%), Gaps = 7/140 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXXX-XXXXXXXXES 77
G + I L+ K PK V NFV L +G+ + ++ FHR+IK F++Q +S
Sbjct: 27 GRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKS 86
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGD 137
IYG F DE + +L+ G V+ ANAG +NGSQFFI+ + WLD K+ +FGKV +
Sbjct: 87 IYGERFPDE-NFKLKHYGPGWVSMANAGK-DTNGSQFFITTVKTAWLDGKHVVFGKVL-E 143
Query: 138 SIFNLLRLGEVDTDKNDRPL 157
+ + ++ TD D+PL
Sbjct: 144 GMEVVRKVETTKTDGRDKPL 163
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 69/129 (53%), Gaps = 12/129 (9%)
Query: 16 IVKTTHGPIDIELWPKEAPKAVRNFVQLCLEG---------YFDNTIFHRIIKGFLVQXX 66
I + G I EL+ P+ NF LC ++ N+IFHRII F+ Q
Sbjct: 12 IDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGG 71
Query: 67 -XXXXXXXXXESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLD 125
ESIYG +F DE + ++ + GL++ ANAG P++N SQFFI+L C WLD
Sbjct: 72 DITNGNGSGGESIYGRSFTDE-NFNMKHDQPGLLSMANAG-PNTNSSQFFITLVPCPWLD 129
Query: 126 RKNTIFGKV 134
K+ +FGKV
Sbjct: 130 GKHVVFGKV 138
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 79/140 (56%), Gaps = 7/140 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXXX-XXXXXXXXES 77
G + I L+ K PK V NFV L +G+ + ++ FHR+IK F++Q +S
Sbjct: 27 GRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKS 86
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGD 137
IYG F DE + +L+ G V+ ANAG +NGSQFFI+ + WLD K+ +FGKV +
Sbjct: 87 IYGERFPDE-NFKLKHYGPGWVSMANAGK-DTNGSQFFITTVKTAWLDGKHVVFGKVL-E 143
Query: 138 SIFNLLRLGEVDTDKNDRPL 157
+ + ++ TD D+PL
Sbjct: 144 GMEVVRKVETTKTDGRDKPL 163
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 78/140 (55%), Gaps = 7/140 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXXXXXXX-XXXXES 77
G + L+ K PK V NFV L +G+ + N+ FHR+IK F++Q +S
Sbjct: 20 GRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKS 79
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGD 137
IYG F DE + +L+ G V+ ANAG +NGSQFFI+ + WLD K+ +FGKV +
Sbjct: 80 IYGERFPDE-NFKLKHYGPGWVSMANAGK-DTNGSQFFITTVKTAWLDGKHVVFGKVL-E 136
Query: 138 SIFNLLRLGEVDTDKNDRPL 157
+ + ++ TD D+PL
Sbjct: 137 GMEVVRKVESTKTDSRDKPL 156
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXXXXXXX-XXXXES 77
G I +EL P+ NF LC G+ + N FHR+I F+ Q +S
Sbjct: 25 GRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKS 84
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVT 135
IYG F DE + +LR G+++ AN+G P++NGSQFFI +CDWLD K+ +FG+V
Sbjct: 85 IYGRKFDDE-NFQLRHEGFGVLSMANSG-PNTNGSQFFICTTKCDWLDGKHVVFGRVV 140
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 79/139 (56%), Gaps = 8/139 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXX-XXXXXXXXXES 77
G I +L+ PK NF LC +G+ + + FHR+I F++Q +S
Sbjct: 16 GTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGKS 75
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGD 137
IYG FADE + +L+ N GL++ ANAG P++NGSQFFI+ WLD K+ +FG+V D
Sbjct: 76 IYGAKFADE-NFQLKHNKPGLLSMANAG-PNTNGSQFFITTVVTSWLDGKHVVFGEVI-D 132
Query: 138 SIFNLLRLGEVDTDKNDRP 156
+ N+++ E + + +P
Sbjct: 133 GM-NVVKAIEAEGSGSGKP 150
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 66/126 (52%), Gaps = 14/126 (11%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL----EG------YFDNTIFHRIIKGFLVQXXX-XXX 70
G I +EL+ PK NF LC +G ++ +++FHR+I F++Q
Sbjct: 22 GRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVIPNFMIQGGDFTRG 81
Query: 71 XXXXXESIYGGNFADEFHSRLRFNHRGL--VACANAGSPHSNGSQFFISLDRCDWLDRKN 128
ESIYG F DE S H GL ++ ANAG P++NGSQFFI WLD K+
Sbjct: 82 NGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAG-PNTNGSQFFICTAATPWLDGKH 140
Query: 129 TIFGKV 134
+FG+V
Sbjct: 141 VVFGRV 146
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 77/140 (55%), Gaps = 10/140 (7%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXXXXXXX-XXXXES 77
G + I L+ + PK V NF QL G+ + +IFHR+I+ F++Q +S
Sbjct: 20 GRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGKS 79
Query: 78 IYGGNFADEFHSRLRFNH-RGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTG 136
IYG F DE L+ H G V+ ANAG P+SNGSQFF++ WLD ++ +FGKV
Sbjct: 80 IYGTRFDDE---NLKIKHFVGAVSMANAG-PNSNGSQFFVTTAPTPWLDGRHVVFGKVV- 134
Query: 137 DSIFNLLRLGEVDTDKNDRP 156
+ + + ++ T ND+P
Sbjct: 135 EGMDVVKKVENTKTGLNDKP 154
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 68/129 (52%), Gaps = 12/129 (9%)
Query: 16 IVKTTHGPIDIELWPKEAPKAVRNFVQLCLEG---------YFDNTIFHRIIKGFLVQXX 66
I + G I EL+ P+ NF LC ++ N+IFHRII F+ Q
Sbjct: 12 IDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGG 71
Query: 67 -XXXXXXXXXESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLD 125
ESIYG +F DE + ++ + GL++ ANAG P++N SQF I+L C WLD
Sbjct: 72 DITNGNGSGGESIYGRSFTDE-NFNMKHDQPGLLSMANAG-PNTNSSQFLITLVPCPWLD 129
Query: 126 RKNTIFGKV 134
K+ +FGKV
Sbjct: 130 GKHVVFGKV 138
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 75/139 (53%), Gaps = 8/139 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXXX-XXXXXXXXES 77
G I + L P NF LC +G+ F + FHRII F+ Q +S
Sbjct: 26 GRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKS 85
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGD 137
IYG F DE + L+ GL++ AN+G P++NGSQFF++ D+ DWLD K+ +FG+VT
Sbjct: 86 IYGKKFDDE-NFILKHTGPGLLSMANSG-PNTNGSQFFLTCDKTDWLDGKHVVFGEVT-- 141
Query: 138 SIFNLLRLGEVDTDKNDRP 156
++LR E K+ +P
Sbjct: 142 EGLDVLRQIEAQGSKDGKP 160
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 75/139 (53%), Gaps = 8/139 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXX-XXXXXXXXXES 77
G I + L P NF LC +G+ F + FHRII F+ Q +S
Sbjct: 18 GRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKS 77
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGD 137
IYG F DE + L+ GL++ AN+G P++NGSQFF++ D+ DWLD K+ +FG+VT
Sbjct: 78 IYGKKFDDE-NFILKHTGPGLLSMANSG-PNTNGSQFFLTCDKTDWLDGKHVVFGEVT-- 133
Query: 138 SIFNLLRLGEVDTDKNDRP 156
++LR E K+ +P
Sbjct: 134 EGLDVLRQIEAQGSKDGKP 152
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXX-XXXXXXXXXES 77
G + EL+ + PK NF L +G+ + + FHRII GF+ Q +S
Sbjct: 18 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 77
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKV 134
IYG F DE + L+ G+++ ANAG P++NGSQFFI + +WLD K+ +FGKV
Sbjct: 78 IYGEKFEDE-NFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFGKV 132
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXXX-XXXXXXXXES 77
G + EL+ + PK NF L +G+ + + FHRII GF+ Q +S
Sbjct: 18 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNFTHCNGTGGKS 77
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKV 134
IYG F DE + L+ G+++ ANAG P++NGSQFFI + +WLD K+ +FGKV
Sbjct: 78 IYGEKFEDE-NFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFGKV 132
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXXX-XXXXXXXXES 77
G + EL+ + PK NF L +G+ + + FHRII GF+ Q +S
Sbjct: 18 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNFTHHNGTGGKS 77
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKV 134
IYG F DE + L+ G+++ ANAG P++NGSQFFI + +WLD K+ +FGKV
Sbjct: 78 IYGEKFEDE-NFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFGKV 132
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXX-XXXXXXXXXES 77
G + EL+ + PK NF L +G+ + + FHRII GF+ Q +S
Sbjct: 26 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 85
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKV 134
IYG F DE + L+ G+++ ANAG P++NGSQFFI + +WLD K+ +FGKV
Sbjct: 86 IYGEKFEDE-NFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFGKV 140
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXX-XXXXXXXXXES 77
G + EL+ + PK NF L +G+ + + FHRII GF+ Q +S
Sbjct: 18 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 77
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKV 134
IYG F DE + L+ G+++ ANAG P++NGSQFFI + +WLD K+ +FGKV
Sbjct: 78 IYGEKFEDE-NFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFGKV 132
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXX-XXXXXXXXXES 77
G + EL+ + PK NF L +G+ + + FHRII GF+ Q +S
Sbjct: 18 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 77
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKV 134
IYG F DE + L+ G+++ ANAG P++NGSQFFI + +WLD K+ +FGKV
Sbjct: 78 IYGEKFEDE-NFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFGKV 132
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXX-XXXXXXXXXES 77
G + EL+ + PK NF L +G+ + + FHRII GF+ Q +S
Sbjct: 17 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 76
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKV 134
IYG F DE + L+ G+++ ANAG P++NGSQFFI + +WLD K+ +FGKV
Sbjct: 77 IYGEKFEDE-NFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFGKV 131
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXX-XXXXXXXXXES 77
G + EL+ + PK NF L +G+ + + FHRII GF+ Q +S
Sbjct: 17 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTHHNGTGGKS 76
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKV 134
IYG F DE + L+ G+++ ANAG P++NGSQFFI + +WLD K+ +FGKV
Sbjct: 77 IYGEKFEDE-NFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFGKV 131
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXX-XXXXXXXXXES 77
G + EL+ + PK NF L +G+ + + FHRII GF+ Q +S
Sbjct: 37 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 96
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKV 134
IYG F DE + L+ G+++ ANAG P++NGSQFFI + +WLD K+ +FGKV
Sbjct: 97 IYGEKFEDE-NFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFGKV 151
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 65/117 (55%), Gaps = 6/117 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXX-XXXXXXXXXES 77
G + EL+ + PK NF L +G+ + + FHRII GF+ Q +S
Sbjct: 18 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 77
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKV 134
IYG F DE + L+ G++ ANAG P++NGSQFFI + +WLD K+ +FGKV
Sbjct: 78 IYGEKFEDE-NFILKHTGPGILTMANAG-PNTNGSQFFICTAKTEWLDGKHVVFGKV 132
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 29/124 (23%)
Query: 15 VIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQXXXXXXXXXX 74
V T HG I I+ + +AP+ V+NF+ C EG+++NTIFHR+I GF++Q
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQ---------- 51
Query: 75 XESIYGGNFA-------------DEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRC 121
GG F +E ++ L+ N RG +A A +PHS +QFFI++
Sbjct: 52 -----GGGFEPGMKQKATKEPIKNEANNGLK-NTRGTLAMARTQAPHSATAQFFINVVDN 105
Query: 122 DWLD 125
D+L+
Sbjct: 106 DFLN 109
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 67/118 (56%), Gaps = 6/118 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXX-XXXXXXXXXES 77
G + +L+ PK NF LC +G+ + + FHR+I F++Q +S
Sbjct: 16 GRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQGGDFTAGNGTGGKS 75
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVT 135
IYGG F DE + + + GL++ ANAG P++NGSQFFI+ C WLD K+ +FG+V
Sbjct: 76 IYGGKFPDE-NFKKHHDRPGLLSMANAG-PNTNGSQFFITTVPCPWLDGKHVVFGEVV 131
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 29/124 (23%)
Query: 15 VIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQXXXXXXXXXX 74
V T HG I I+ + +AP+ V+NF+ C EG+++NTIFHR+I GF++Q
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQ---------- 51
Query: 75 XESIYGGNFA-------------DEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRC 121
GG F +E ++ L+ N RG +A A +PHS +QFFI++
Sbjct: 52 -----GGGFEPGMKQKATKEPIKNEANNGLK-NTRGTLAMARTQAPHSATAQFFINVVDN 105
Query: 122 DWLD 125
D+L+
Sbjct: 106 DFLN 109
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 8/118 (6%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL----EGYFDNTIFHRIIKGFLVQXXXXXXX-XXXXE 76
G I I L+ K PK NF++L EGY + FHR+I F++Q
Sbjct: 21 GRIVIGLFGKTVPKTATNFIELAKKPKGEGY-PGSKFHRVIADFMIQGGDFTRGDGTGGR 79
Query: 77 SIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKV 134
SIYG FADE + +L+ G ++ ANAG+ +NGSQFFI+ + WLD ++ +FGK+
Sbjct: 80 SIYGEKFADE-NFKLKHYGAGWLSMANAGA-DTNGSQFFITTVKTPWLDGRHVVFGKI 135
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXX-XXXXXXXXXES 77
G + EL+ + PK NF L +G+ + + FH+II GF+ Q +S
Sbjct: 18 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGFMCQGGDFTRHNGTGGKS 77
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKV 134
IYG F DE + L+ G+++ ANAG P++NGSQFFI + +WLD K+ +FGKV
Sbjct: 78 IYGEKFEDE-NFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFGKV 132
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 67/132 (50%), Gaps = 17/132 (12%)
Query: 16 IVKTTHGPIDIELWPKEAPKAVRNFVQLCL--EGY--------FDNTIFHRIIKGFLVQX 65
I +T G I +EL+ + P NF LC +G + + FHRII F++Q
Sbjct: 28 IGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQG 87
Query: 66 XXXXXX-XXXXESIYGGNFADEFHSRLRFNHRG--LVACANAGSPHSNGSQFFISLDRCD 122
ESIYG F DE + H L++ ANAG P++NGSQFFI+ C
Sbjct: 88 GDFTRGDGTGGESIYGSKFRDE---NFVYTHDAPFLLSMANAG-PNTNGSQFFITTVPCP 143
Query: 123 WLDRKNTIFGKV 134
WLD K+ +FGKV
Sbjct: 144 WLDGKHVVFGKV 155
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 65/117 (55%), Gaps = 6/117 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXX-XXXXXXXXXES 77
G + EL+ + PK NF L +G+ + + FHRII GF+ Q +S
Sbjct: 18 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 77
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKV 134
IYG F DE + L+ G+++ ANAG P++NGSQFFI + +WLD + +FGKV
Sbjct: 78 IYGEKFEDE-NFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGXHVVFGKV 132
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 65/117 (55%), Gaps = 6/117 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXX-XXXXXXXXXES 77
G + EL+ + PK NF L +G+ + + FHRII GF Q +S
Sbjct: 17 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFXCQGGDFTRHNGTGGKS 76
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKV 134
IYG F DE + L+ G+++ ANAG P++NGSQFFI + +WLD K+ +FGKV
Sbjct: 77 IYGEKFEDE-NFILKHTGPGILSXANAG-PNTNGSQFFICTAKTEWLDGKHVVFGKV 131
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 8/127 (6%)
Query: 34 PKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXXX-XXXXXXXXESIYGGNFADEFHS 89
P NF LC +G+ F + FHRII F Q +SIYG F DE +
Sbjct: 39 PXTAENFRCLCTHEKGFGFKGSSFHRIIPQFXCQGGDFTNHNGTGGKSIYGKKFDDE-NF 97
Query: 90 RLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLGEVD 149
L+ GL++ AN+G P++NGSQFF++ D+ DWLD K+ +FG+VT ++LR E
Sbjct: 98 ILKHTGPGLLSXANSG-PNTNGSQFFLTCDKTDWLDGKHVVFGEVT--EGLDVLRQIEAQ 154
Query: 150 TDKNDRP 156
K+ +P
Sbjct: 155 GSKDGKP 161
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXX-XXXXXXXXXES 77
G + +EL PK NF LC +G+ + + FHR+I F+ Q +S
Sbjct: 19 GRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKS 78
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKV 134
IYG F DE + L+ G+++ ANAG P++NGSQFFI + DWLD K+ +FG V
Sbjct: 79 IYGSRFPDE-NFTLKHVGPGVLSMANAG-PNTNGSQFFICTIKTDWLDGKHVVFGHV 133
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXX-XXXXXXXXXES 77
G + +EL PK NF LC +G+ + + FHR+I F+ Q +S
Sbjct: 18 GRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKS 77
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKV 134
IYG F DE + L+ G+++ ANAG P++NGSQFFI + DWLD K+ +FG V
Sbjct: 78 IYGSRFPDE-NFTLKHVGPGVLSMANAG-PNTNGSQFFICTIKTDWLDGKHVVFGHV 132
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXX-XXXXXXXXXES 77
G + +EL PK NF LC +G+ + + FHR+I F+ Q +S
Sbjct: 18 GRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKS 77
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKV 134
IYG F DE + L+ G+++ ANAG P++NGSQFFI + DWLD K+ +FG V
Sbjct: 78 IYGSRFPDE-NFTLKHVGPGVLSMANAG-PNTNGSQFFICTIKTDWLDGKHVVFGHV 132
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXX-XXXXXXXXXES 77
G + +EL PK NF LC +G+ + + FHR+I F+ Q +S
Sbjct: 17 GRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKS 76
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKV 134
IYG F DE + L+ G+++ ANAG P++NGSQFFI + DWLD K+ +FG V
Sbjct: 77 IYGSRFPDE-NFTLKHVGPGVLSMANAG-PNTNGSQFFICTIKTDWLDGKHVVFGHV 131
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXX-XXXXXXXXXES 77
G + EL+ + PK NF L +G+ + + FHRII GF+ Q +S
Sbjct: 17 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 76
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKV 134
IYG F DE + L+ G+++ ANAG P++NGSQFFI + WLD K+ +FG V
Sbjct: 77 IYGEKFEDE-NFILKHTGPGILSMANAG-PNTNGSQFFICTAKTKWLDGKHVVFGAV 131
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXX-XXXXXXXXXES 77
G + EL+ + PK NF L +G+ + + FHRII GF+ Q +S
Sbjct: 18 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 77
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKV 134
IYG F DE + L+ G+++ ANAG P++NGSQFFI + WLD + +FGKV
Sbjct: 78 IYGEKFEDE-NFILKHTGPGILSMANAG-PNTNGSQFFICTAKTKWLDGXHVVFGKV 132
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 70/117 (59%), Gaps = 6/117 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXX-XXXXXXXXXES 77
G I +L+ + PK +NF +L G+ + ++IFHR+I F++Q +S
Sbjct: 17 GRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKS 76
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKV 134
IYG FADE + +++ GL++ ANAG+ ++NGSQFFI+ WLD K+ +FG+V
Sbjct: 77 IYGEKFADE-NFQVKHTKPGLLSMANAGA-NTNGSQFFITTVPTSWLDGKHVVFGEV 131
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 70/117 (59%), Gaps = 6/117 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXX-XXXXXXXXXES 77
G I +L+ + PK +NF +L G+ + ++IFHR+I F++Q +S
Sbjct: 18 GRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKS 77
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKV 134
IYG FADE + +++ GL++ ANAG+ ++NGSQFFI+ WLD K+ +FG+V
Sbjct: 78 IYGEKFADE-NFQVKHTKPGLLSMANAGA-NTNGSQFFITTVPTSWLDGKHVVFGEV 132
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXX-XXXXXXXXXES 77
G + EL+ + PK NF L +G+ + + FHRII GF+ Q +S
Sbjct: 22 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 81
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKV 134
IYG F DE + L+ G+++ ANAG P++NGSQFFI + WLD + +FGKV
Sbjct: 82 IYGEKFEDE-NFILKHTGPGILSMANAG-PNTNGSQFFICTAKTKWLDGXHVVFGKV 136
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 65/124 (52%), Gaps = 13/124 (10%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCLEG----------YFDNTIFHRIIKGFLVQXX-XXXX 70
G I +EL+ PK NF LC +F + FHRII F++Q
Sbjct: 18 GRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRG 77
Query: 71 XXXXXESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTI 130
ESIYG F DE + + + G+++ ANAG P++NGSQFF+ + +WLD K+ +
Sbjct: 78 NGTGGESIYGEKFPDE-NFKEKHTGPGVLSMANAG-PNTNGSQFFLCTVKTEWLDGKHVV 135
Query: 131 FGKV 134
FG+V
Sbjct: 136 FGRV 139
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 74/145 (51%), Gaps = 17/145 (11%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EG---------YFDNTIFHRIIKGFLVQXXX-XX 69
G I +EL+ PK NF LC +G +F FHRIIK F++Q
Sbjct: 30 GRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSN 89
Query: 70 XXXXXXESIYGGNFADE-FHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKN 128
ESIYG F DE FH + + GL++ ANAGS ++NGSQFFI+ LD K+
Sbjct: 90 QNGTGGESIYGEKFEDENFH--YKHDKEGLLSMANAGS-NTNGSQFFITTVPTPHLDGKH 146
Query: 129 TIFGKVT-GDSIFNLLRLGEVDTDK 152
+FG+V G + +L EV +K
Sbjct: 147 VVFGQVIKGMGVAKILENVEVKGEK 171
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 79/149 (53%), Gaps = 17/149 (11%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLC--LEG---------YFDNTIFHRIIKGFLVQXXXXXX 70
G I +EL+ AP+ NF+ LC + G ++ + FHR+IK F++Q
Sbjct: 21 GRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTK 80
Query: 71 X-XXXXESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNT 129
ESIYGG F DE ++ + +V+ AN G P++NGSQFFI+ L+ +
Sbjct: 81 GDGTGGESIYGGMFDDE-EFVMKHDEPFVVSMANKG-PNTNGSQFFITTTPAPHLNNIHV 138
Query: 130 IFGK-VTGDSIFNLLRLGEVDTDKNDRPL 157
+FGK V+G + + ++ + T+ +RPL
Sbjct: 139 VFGKVVSGQEV--VTKIEYLKTNSKNRPL 165
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 34/138 (24%)
Query: 15 VIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQXXXXXXXXXX 74
V++ T+ G I++EL ++AP +V+NFV G+++NT FHR+I GF++Q
Sbjct: 7 VLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQ---------- 56
Query: 75 XESIYGGNFADEFHSR-------------LRFNHRGLVACANAGSPHSNGSQFFISLDRC 121
GG F ++ + LR N RG +A A S SQFFI++
Sbjct: 57 -----GGGFTEQMQQKKPNPPIKNEADNGLR-NTRGTIAMARTADKDSATSQFFINVADN 110
Query: 122 DWLDRKN-----TIFGKV 134
+LD +FGKV
Sbjct: 111 AFLDHGQRDFGYAVFGKV 128
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 34/138 (24%)
Query: 15 VIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQXXXXXXXXXX 74
V++ T+ G I++EL ++AP +V+NFV G+++NT FHR+I GF++Q
Sbjct: 7 VLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQ---------- 56
Query: 75 XESIYGGNFADEFHSR-------------LRFNHRGLVACANAGSPHSNGSQFFISLDRC 121
GG F ++ + LR N RG +A A S SQFFI++
Sbjct: 57 -----GGGFTEQMQQKKPNPPIKNEADNGLR-NTRGTIAMARTADKDSATSQFFINVADN 110
Query: 122 DWLDRKN-----TIFGKV 134
+LD +FGKV
Sbjct: 111 AFLDHGQRDFGYAVFGKV 128
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 37/141 (26%)
Query: 15 VIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQXXXXXXXXXX 74
V + T HG I +EL +APK V NF+ +G++D TIFHR+I GF++Q
Sbjct: 6 VELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQ---------- 55
Query: 75 XESIYGGNF-------------ADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRC 121
GG F A+E ++ L+ N +A A PHS +QFFI+++
Sbjct: 56 -----GGGFEPGLKQKPTDAPIANEANNGLK-NDTYTIAMARTNDPHSATAQFFINVNDN 109
Query: 122 DWLDRKN--------TIFGKV 134
++L+ + +FGKV
Sbjct: 110 EFLNHSSPTPQGWGYAVFGKV 130
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EGY-FDNTIFHRIIKGFLVQXXXXXXX-XXXXES 77
G I +EL+ P+ NF LC +G+ F N+IFHR+I F+ Q +S
Sbjct: 21 GRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGGDITKHDGTGGQS 80
Query: 78 IYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKV 134
IYG F DE + ++ GL++ AN G ++N SQF I+L + + LD K+ +FG V
Sbjct: 81 IYGDKFEDE-NFDVKHTGPGLLSMANQGQ-NTNNSQFVITLKKAEHLDFKHVVFGFV 135
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 3/110 (2%)
Query: 17 VKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQXXXXXXXXXXXE 76
++T HG I ++L+ +AP+ NF Q +G++D TIFHR+I GF++Q
Sbjct: 4 LQTNHGTITLKLFADKAPETAANFEQYVKDGHYDGTIFHRVIDGFMIQGGGFEPGMKQKS 63
Query: 77 SIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDR 126
+ +E ++ L N + +A A PHS +QFFI++ +LD
Sbjct: 64 TR--APIKNEANNGLS-NKKYTIAMARTPDPHSASAQFFINVKDNAFLDH 110
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 17/148 (11%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL-----------EGYFDNTIFHRIIKGFLVQXX-XXX 69
G I +L+ PK +NF+ LC + + + FHR++K F++Q
Sbjct: 34 GRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSE 93
Query: 70 XXXXXXESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNT 129
ESIYGG F DE + L+ + L++ AN G H+NGSQFFI+ LD +
Sbjct: 94 GNGKGGESIYGGYFKDE-NFILKHDRAFLLSMANRGK-HTNGSQFFITTKPAPHLDGVHV 151
Query: 130 IFGKVTGDSIFNLL-RLGEVDTDKNDRP 156
+FG V S F ++ ++ + TD RP
Sbjct: 152 VFGLVI--SGFEVIEQIENLKTDAASRP 177
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 72/151 (47%), Gaps = 20/151 (13%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EG---------YFDNTIFHRIIKGFLVQXX-XXX 69
G + EL+ PK NF LC +G ++ + +FHR++K F+VQ
Sbjct: 24 GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSE 83
Query: 70 XXXXXXESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNT 129
ESIYGG F DE + ++ N L++ AN G +NGSQFFI+ LD +
Sbjct: 84 GNGRGGESIYGGFFEDESFA-VKHNKEFLLSMANRGKD-TNGSQFFITTKPTPHLDGHHV 141
Query: 130 IFGKV-TGDSIFNLLRLGEVDTDKNDRPLDP 159
+FG+V +G + E++ K D P
Sbjct: 142 VFGQVISGQEVVR-----EIENQKTDAASKP 167
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 73/151 (48%), Gaps = 20/151 (13%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EG---------YFDNTIFHRIIKGFLVQXX-XXX 69
G + EL+ PK NF LC +G ++ + +FHR++K F+VQ
Sbjct: 24 GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRVVKDFMVQGGDFSE 83
Query: 70 XXXXXXESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNT 129
ESIYGG F DE + ++ N L++ AN G +NGSQFFI+ LD +
Sbjct: 84 GNGRGGESIYGGFFEDESFA-VKHNKEFLLSMANRGKD-TNGSQFFITTKPTPHLDGHHV 141
Query: 130 IFGKV-TGDSIFNLLRLGEVDTDKNDRPLDP 159
+FG+V +G + + E++ K D P
Sbjct: 142 VFGQVISGQEV-----VREIENQKTDAASKP 167
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 72/151 (47%), Gaps = 20/151 (13%)
Query: 22 GPIDIELWPKEAPKAVRNFVQLCL--EG---------YFDNTIFHRIIKGFLVQXX-XXX 69
G + EL+ PK NF LC +G ++ + +FHR++K F+VQ
Sbjct: 41 GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSE 100
Query: 70 XXXXXXESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNT 129
ESIYGG F DE + ++ N L++ AN G +NGSQFFI+ LD +
Sbjct: 101 GNGRGGESIYGGFFEDESFA-VKHNAAFLLSMANRGK-DTNGSQFFITTKPTPHLDGHHV 158
Query: 130 IFGKV-TGDSIFNLLRLGEVDTDKNDRPLDP 159
+FG+V +G + E++ K D P
Sbjct: 159 VFGQVISGQEVVR-----EIENQKTDAASKP 184
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Query: 121 CDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVEVLWNPFEDIVPRA 180
CD L ++ +V + + N+LRLGE + +N + NP+ ++ A
Sbjct: 367 CDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGI-------------NPYCALIEEA 413
Query: 181 PSRPSIQTTTEAENKDIKKKA 201
I+ EN++I +KA
Sbjct: 414 YGLDKIEFLQSHENQEIYQKA 434
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Query: 121 CDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVEVLWNPFEDIVPRA 180
CD L ++ +V + + N+LRLGE + +N + NP+ ++ A
Sbjct: 364 CDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGI-------------NPYCALIEEA 410
Query: 181 PSRPSIQTTTEAENKDIKKKA 201
I+ EN++I +KA
Sbjct: 411 YGLDKIEFLQSHENQEIYQKA 431
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Query: 121 CDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVEVLWNPFEDIVPRA 180
CD L+ + +VT D++ N+L++GE DK R L+ N D + +A
Sbjct: 347 CDLLEIADNRIIEVTLDALENILKMGE--ADKEARGLNI-----------NENADFIEKA 393
Query: 181 PSRPSIQTTTEAENKDIKKKAVK 203
I + EN I +KA K
Sbjct: 394 GGMEKIFNCQQNENDKIYEKAYK 416
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Query: 121 CDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVEVLWNPFEDIVPRA 180
CD L+ + +VT D++ N+L++GE DK R L+ N D + +A
Sbjct: 346 CDLLEIADNRIIEVTLDALENILKMGE--ADKEARGLNI-----------NENADFIEKA 392
Query: 181 PSRPSIQTTTEAENKDIKKKAVK 203
I + EN I +KA K
Sbjct: 393 GGMEKIFNCQQNENDKIYEKAYK 415
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Query: 121 CDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVEVLWNPFEDIVPRA 180
CD L+ + +VT D++ N+L++GE DK R L+ N D + +A
Sbjct: 348 CDLLEIADNRIIEVTLDALENILKMGE--ADKEARGLNI-----------NENADFIEKA 394
Query: 181 PSRPSIQTTTEAENKDIKKKAVK 203
I + EN I +KA K
Sbjct: 395 GGMEKIFNCQQNENDKIYEKAYK 417
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Query: 121 CDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVEVLWNPFEDIVPRA 180
CD L+ + +VT D++ N+L++GE DK R L+ N D + +A
Sbjct: 348 CDLLEIADNRIIEVTLDALENILKMGE--ADKEARGLNI-----------NENADFIEKA 394
Query: 181 PSRPSIQTTTEAENKDIKKKAVK 203
I + EN I +KA K
Sbjct: 395 GGMEKIFNCQQNENDKIYEKAYK 417
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Query: 121 CDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVEVLWNPFEDIVPRA 180
CD L+ + +VT D++ N+L++GE DK R L+ N D + +A
Sbjct: 347 CDLLEIADNRIIEVTLDALENILKMGE--ADKEARGLNI-----------NENADFIEKA 393
Query: 181 PSRPSIQTTTEAENKDIKKKAVK 203
I + EN I +KA K
Sbjct: 394 GGMEKIFNCQQNENDKIYEKAYK 416
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Query: 121 CDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVEVLWNPFEDIVPRA 180
CD L+ + +VT D++ N+L++GE DK R L+ N D + +A
Sbjct: 434 CDLLEIADNRIIEVTLDALENILKMGE--ADKEARGLNI-----------NENADFIEKA 480
Query: 181 PSRPSIQTTTEAENKDIKKKAVK 203
I + EN I +KA K
Sbjct: 481 GGMEKIFNCQQNENDKIYEKAYK 503
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,721,304
Number of Sequences: 62578
Number of extensions: 377080
Number of successful extensions: 811
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 619
Number of HSP's gapped (non-prelim): 87
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)