Query 042423
Match_columns 344
No_of_seqs 271 out of 1420
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 06:03:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042423.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042423hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0885 Peptidyl-prolyl cis-tr 100.0 3.4E-79 7.3E-84 590.9 19.5 308 1-320 1-311 (439)
2 cd01925 cyclophilin_CeCYP16-li 100.0 1E-51 2.3E-56 369.3 17.7 170 8-179 1-170 (171)
3 KOG0883 Cyclophilin type, U bo 100.0 1.2E-50 2.6E-55 394.1 7.1 166 8-176 273-438 (518)
4 KOG0881 Cyclophilin type pepti 100.0 1.4E-49 2.9E-54 337.3 8.1 154 13-169 10-163 (164)
5 cd01923 cyclophilin_RING cyclo 100.0 5.3E-48 1.1E-52 341.6 16.6 159 14-175 1-159 (159)
6 cd01921 cyclophilin_RRM cyclop 100.0 9.3E-47 2E-51 335.6 15.5 157 16-175 1-165 (166)
7 cd01928 Cyclophilin_PPIL3_like 100.0 3.9E-45 8.3E-50 321.6 15.4 152 14-168 2-153 (153)
8 KOG0546 HSP90 co-chaperone CPR 100.0 1.2E-45 2.7E-50 358.0 11.2 158 11-172 7-181 (372)
9 cd01927 cyclophilin_WD40 cyclo 100.0 7E-45 1.5E-49 318.2 14.0 148 16-166 1-148 (148)
10 KOG0882 Cyclophilin-related pe 100.0 7.5E-45 1.6E-49 359.1 10.5 152 14-168 406-557 (558)
11 KOG0884 Similar to cyclophilin 100.0 1.9E-44 4.1E-49 304.5 10.5 158 14-174 2-160 (161)
12 cd01922 cyclophilin_SpCYP2_lik 100.0 5.7E-44 1.2E-48 311.9 13.4 146 16-165 1-146 (146)
13 COG0652 PpiB Peptidyl-prolyl c 100.0 8E-44 1.7E-48 315.0 14.3 149 15-169 2-157 (158)
14 KOG0880 Peptidyl-prolyl cis-tr 100.0 4.4E-44 9.6E-49 322.8 12.9 163 4-170 31-203 (217)
15 PRK10903 peptidyl-prolyl cis-t 100.0 1.4E-40 3E-45 302.6 16.4 157 8-169 24-189 (190)
16 PTZ00221 cyclophilin; Provisio 100.0 1.7E-40 3.6E-45 312.8 16.5 161 8-175 48-225 (249)
17 PLN03149 peptidyl-prolyl isome 100.0 2.6E-40 5.6E-45 299.9 15.8 154 13-169 19-186 (186)
18 KOG0879 U-snRNP-associated cyc 100.0 9.7E-41 2.1E-45 286.2 10.3 158 6-167 4-175 (177)
19 PRK10791 peptidyl-prolyl cis-t 100.0 5.9E-40 1.3E-44 292.0 15.3 150 15-169 2-163 (164)
20 KOG0415 Predicted peptidyl pro 100.0 1.9E-40 4.1E-45 320.1 11.5 160 14-176 2-169 (479)
21 cd01926 cyclophilin_ABH_like c 100.0 2.2E-39 4.8E-44 287.5 13.4 144 19-167 12-164 (164)
22 cd01920 cyclophilin_EcCYP_like 100.0 2.8E-39 6.1E-44 284.8 13.5 145 17-166 2-155 (155)
23 PTZ00060 cyclophilin; Provisio 100.0 9.8E-39 2.1E-43 288.7 16.0 154 11-169 14-182 (183)
24 cd00317 cyclophilin cyclophili 100.0 1.9E-38 4.2E-43 273.9 13.9 145 16-164 1-145 (146)
25 PF00160 Pro_isomerase: Cyclop 100.0 1.5E-36 3.2E-41 264.3 15.2 151 14-168 1-155 (155)
26 cd01924 cyclophilin_TLP40_like 100.0 6.8E-36 1.5E-40 268.8 14.1 140 18-170 3-175 (176)
27 KOG0111 Cyclophilin-type pepti 100.0 3.7E-35 8.1E-40 269.3 7.2 146 19-169 148-297 (298)
28 KOG0865 Cyclophilin type pepti 99.9 4.7E-28 1E-32 216.2 7.9 146 19-169 15-167 (167)
29 KOG0882 Cyclophilin-related pe 96.9 0.00073 1.6E-08 69.0 3.9 152 13-168 99-261 (558)
30 TIGR03268 methan_mark_3 putati 91.4 1.3 2.8E-05 46.3 9.8 97 23-142 202-298 (503)
31 PRK00969 hypothetical protein; 90.9 1.4 3.1E-05 46.1 9.5 115 12-146 50-166 (508)
32 PRK00969 hypothetical protein; 90.7 1.7 3.6E-05 45.6 9.8 97 23-142 205-301 (508)
33 TIGR03268 methan_mark_3 putati 89.9 2.2 4.7E-05 44.7 9.8 115 12-146 46-163 (503)
34 PF04921 XAP5: XAP5, circadian 88.5 0.39 8.4E-06 45.9 3.0 35 291-325 123-158 (239)
35 PF15377 DUF4604: Domain of un 84.4 0.41 8.9E-06 42.6 0.9 20 195-214 139-158 (158)
36 COG4070 Predicted peptidyl-pro 83.4 3.2 7E-05 42.5 6.7 129 6-147 352-498 (512)
37 COG4070 Predicted peptidyl-pro 81.9 6.3 0.00014 40.5 8.1 120 23-172 204-327 (512)
38 PF04126 Cyclophil_like: Cyclo 52.5 1.3E+02 0.0028 25.5 8.9 98 14-145 2-111 (120)
39 KOG2894 Uncharacterized conser 51.8 5 0.00011 39.3 0.1 26 196-221 107-132 (331)
40 PF12903 DUF3830: Protein of u 47.7 36 0.00078 30.4 4.8 108 20-145 6-128 (147)
41 KOG0772 Uncharacterized conser 26.8 43 0.00092 35.8 2.2 21 224-244 76-96 (641)
42 PF05913 DUF871: Bacterial pro 25.0 48 0.001 33.5 2.2 50 95-146 299-348 (357)
43 KOG2321 WD40 repeat protein [G 24.2 12 0.00026 40.2 -2.4 20 225-244 470-489 (703)
No 1
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-79 Score=590.93 Aligned_cols=308 Identities=56% Similarity=0.878 Sum_probs=262.5
Q ss_pred CCCCCCCCCCCCcEEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCCccCceeEEeecCcEEEccCCCCCCCCCCcccC
Q 042423 1 MSSVYVLEPPTKGKVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGDPTGTGTGGESIYG 80 (344)
Q Consensus 1 ms~~y~~ePpt~~kV~l~Ts~G~I~IEL~~d~aP~tv~NFl~Lc~~g~Ydgt~FhRVip~fiIQgGDp~g~G~gg~siyg 80 (344)
||.+|++||||+|+|+|.||.|+|.||||+++||++|+||++||..|||+|+.|||++|+|++|||||+++|+||+||||
T Consensus 1 ms~~~~~EP~ttgkvil~TT~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qggdp~~~gtGgesiyg 80 (439)
T KOG0885|consen 1 MSTSYNLEPPTTGKVILKTTKGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQGGDPTGTGTGGESIYG 80 (439)
T ss_pred CCcccccCCCccceEEEEeccCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcccCCCCCCCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCCCcccccCceeEEecCCCCCCCCceEEEecCCCCCCCCCCeEEEEEEcCceeeeeecccccCCCCCCCCCCC
Q 042423 81 GNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPP 160 (344)
Q Consensus 81 ~~f~dE~~~rlk~~~rGlVsma~~g~~~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL~kI~~v~td~~~rP~~~~ 160 (344)
.+|++|+|+||+|++||+|+|||.+ .+.|||||||||+++|||+++|||||+|+|+++|++.+|.+++++.++||+.|
T Consensus 81 ~~fadE~h~Rlrf~rrGlvgmana~-~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p- 158 (439)
T KOG0885|consen 81 RPFADEFHPRLRFNRRGLVGMANAG-NDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDP- 158 (439)
T ss_pred ccchhhcCcceeeeccceeeecccC-CCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCc-
Confidence 9999999999999999999999999 79999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEecCCCCcccCCCCCCCCCCcchhhhhhhhhhhhccCccceeccccchhhhHhHHhhcc-ccccccccCCCCc
Q 042423 161 PKLLSVEVLWNPFEDIVPRAPSRPSIQTTTEAENKDIKKKAVKKLNLLSFGEEAEEEEKELASVKQ-KIRSSHDVLDDPR 239 (344)
Q Consensus 161 i~I~~~~Vl~~PF~Di~~r~~~~~~~~~~~~~~~~~~~kk~~k~~~llsf~~e~~~~e~~~~~~~~-k~ks~hd~l~d~~ 239 (344)
++|.+|+|++|||+||+||.+.+... +.+++.++.+++.+|+++|||||||+|+++++++..++ |.||+||+++||+
T Consensus 159 ~kI~s~EV~~npFdDI~pr~~r~~~~--e~~ke~k~~k~~~~k~~~lLsfgdE~E~de~e~~~~~k~kskSshd~~dDsr 236 (439)
T KOG0885|consen 159 PKIKSVEVLINPFDDIKPRELRKESE--EKKKERKELKKKGTKNKNLLSFGDEAEEDEEEVAVVKKRKSKSSHDVTDDSR 236 (439)
T ss_pred cceeeeEeecCchhhcchhhhhcccc--hhhhhhcccccccccccceeccccccccchhhHhhhhhhhhccccccccCch
Confidence 89999999999999999997654433 23455577888999999999999999999999888776 9999999999999
Q ss_pred ccccccccCCcccchhHHHHHHHHHHhcCCCCCcccCCCCCCCCCCC--CCchHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042423 240 LLKEDKGLNTSGDKTREVQLSVREALSSKREEPKKDSEAEFPNFIDH--SDDDEASFDAKMRQKILRRRKDLGDVPPKQK 317 (344)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (344)
|++.+..-..++ .. ...+.|...+.... +++..-+..|- -.++-..+.++|+-+|+.++.+.++.++...
T Consensus 237 l~~~~~~~~~~~--~s----ea~~~ls~~~~dsv--e~a~s~dt~D~~~~k~ek~~kr~k~~l~~lsk~~e~~d~k~vl~ 308 (439)
T KOG0885|consen 237 LLKIPLSVSESE--KS----EALERLSDAKHDSV--EEATSKDTSDTKNNKEEKMKKRLKKTLQMLSKSQESGDNKNVLV 308 (439)
T ss_pred hhcCcccccccc--hh----hhhhhhccccccch--hhcccccchhhhccccchhhhhhHHHhHHHHhhcccccCCcccc
Confidence 999873322222 11 11222221111111 11111111121 1222478999999999999999999999888
Q ss_pred ccC
Q 042423 318 MHN 320 (344)
Q Consensus 318 ~~~ 320 (344)
+++
T Consensus 309 ~rk 311 (439)
T KOG0885|consen 309 RRK 311 (439)
T ss_pred chh
Confidence 754
No 2
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1e-51 Score=369.31 Aligned_cols=170 Identities=75% Similarity=1.264 Sum_probs=165.8
Q ss_pred CCCCCcEEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCCccCceeEEeecCcEEEccCCCCCCCCCCcccCCCCCCCc
Q 042423 8 EPPTKGKVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGDPTGTGTGGESIYGGNFADEF 87 (344)
Q Consensus 8 ePpt~~kV~l~Ts~G~I~IEL~~d~aP~tv~NFl~Lc~~g~Ydgt~FhRVip~fiIQgGDp~g~G~gg~siyg~~f~dE~ 87 (344)
|||++++|+|+|+.|+|+|+||++.||+||+||++||+.+||+|+.||||+++|+|||||+.++|.++.++||.+|++|.
T Consensus 1 ~~~~~~~v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQgGd~~~~g~g~~s~~g~~~~~E~ 80 (171)
T cd01925 1 EPPTTGKVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTGGESIYGEPFKDEF 80 (171)
T ss_pred CCCcccEEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEccccCCCCccCcccCCCccCccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCceeEEecCCCCCCCCceEEEecCCCCCCCCCCeEEEEEEcCceeeeeecccccCCCCCCCCCCCcEEEEEE
Q 042423 88 HSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVE 167 (344)
Q Consensus 88 ~~rlk~~~rGlVsma~~g~~~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL~kI~~v~td~~~rP~~~~i~I~~~~ 167 (344)
+++++|+++|+||||+.+ +++++||||||++++++||++|+|||+|++++++++++|++++++.+++|+++ ++|.+|+
T Consensus 81 ~~~~~~~~~G~l~ma~~g-~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~-i~I~~~~ 158 (171)
T cd01925 81 HSRLRFNRRGLVGMANAG-DDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYP-PKITSVE 158 (171)
T ss_pred ccCcCCCCCcEEEECcCC-CCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCC-eEEEEEE
Confidence 888999999999999999 88999999999999999999999999999878999999999999999999999 9999999
Q ss_pred EecCCCCcccCC
Q 042423 168 VLWNPFEDIVPR 179 (344)
Q Consensus 168 Vl~~PF~Di~~r 179 (344)
|+.|||+|++||
T Consensus 159 i~~~pf~~~~~~ 170 (171)
T cd01925 159 VLENPFDDIVPR 170 (171)
T ss_pred EEcCCchhhccc
Confidence 999999999998
No 3
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-50 Score=394.14 Aligned_cols=166 Identities=49% Similarity=0.898 Sum_probs=161.9
Q ss_pred CCCCCcEEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCCccCceeEEeecCcEEEccCCCCCCCCCCcccCCCCCCCc
Q 042423 8 EPPTKGKVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGDPTGTGTGGESIYGGNFADEF 87 (344)
Q Consensus 8 ePpt~~kV~l~Ts~G~I~IEL~~d~aP~tv~NFl~Lc~~g~Ydgt~FhRVip~fiIQgGDp~g~G~gg~siyg~~f~dE~ 87 (344)
.+.-+|+|.|.|++|+|.|||+++.+|++|+||+.||..|||+|++|||.|.+||||||||+|+|+||+||||.+|.||+
T Consensus 273 rvKkkgyvrl~Tn~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHRsIrnFmiQGGDPTGTG~GGeSiWgKpFkDEf 352 (518)
T KOG0883|consen 273 RVKKKGYVRLVTNHGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEF 352 (518)
T ss_pred cccccceEEEeccCCceeeEeecCcchHHHHHHHHHHhcccccchHHHHHHHHHeeeCCCCCCCCCCCccccCCcccccc
Confidence 35667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCceeEEecCCCCCCCCceEEEecCCCCCCCCCCeEEEEEEcCceeeeeecccccCCCCCCCCCCCcEEEEEE
Q 042423 88 HSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVE 167 (344)
Q Consensus 88 ~~rlk~~~rGlVsma~~g~~~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL~kI~~v~td~~~rP~~~~i~I~~~~ 167 (344)
.+.|.|..||+|+|||+| ||+||||||||+.+|-+||++|||||+||| |+++|.+|+.+++++.+||+.+ |+|..+.
T Consensus 353 ~~~l~H~gRGvlSMANsG-pnTNgSQFFItyrsckhLd~KHTIFGrvVG-GldtL~amEnve~d~~DrP~e~-I~i~~~~ 429 (518)
T KOG0883|consen 353 CSNLSHDGRGVLSMANSG-PNTNGSQFFITYRSCKHLDNKHTIFGRVVG-GLDTLTAMENVETDEKDRPKEE-IKIEDAI 429 (518)
T ss_pred CCCCCcCCcceEeeccCC-CCCCCceEEEEecchhhccccceeeeeeec-cHHHHHHHhcCCCCCCCCcccc-eEEeeeE
Confidence 999999999999999999 999999999999999999999999999999 9999999999999999999999 9999999
Q ss_pred EecCCCCcc
Q 042423 168 VLWNPFEDI 176 (344)
Q Consensus 168 Vl~~PF~Di 176 (344)
|..|||++.
T Consensus 430 VFVdPfeEa 438 (518)
T KOG0883|consen 430 VFVDPFEEA 438 (518)
T ss_pred EeeCcHHHH
Confidence 999999854
No 4
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-49 Score=337.33 Aligned_cols=154 Identities=49% Similarity=0.899 Sum_probs=149.2
Q ss_pred cEEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCCccCceeEEeecCcEEEccCCCCCCCCCCcccCCCCCCCcCCCcc
Q 042423 13 GKVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGDPTGTGTGGESIYGGNFADEFHSRLR 92 (344)
Q Consensus 13 ~kV~l~Ts~G~I~IEL~~d~aP~tv~NFl~Lc~~g~Ydgt~FhRVip~fiIQgGDp~g~G~gg~siyg~~f~dE~~~rlk 92 (344)
..|+|+|++|.|++|||-+.||+||+||..|++.|||+|++||||+++||||||||+|+|.||.||||..|.||.|+.|+
T Consensus 10 ~~V~LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTGTGRGGaSIYG~kF~DEi~~dLk 89 (164)
T KOG0881|consen 10 PNVTLETSMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTGTGRGGASIYGDKFEDEIHSDLK 89 (164)
T ss_pred CeEEEeecccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCCCCCCccccccchhhhhhhhhhc
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCceeEEecCCCCCCCCceEEEecCCCCCCCCCCeEEEEEEcCceeeeeecccccCCCCCCCCCCCcEEEEEEEe
Q 042423 93 FNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVEVL 169 (344)
Q Consensus 93 ~~~rGlVsma~~g~~~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL~kI~~v~td~~~rP~~~~i~I~~~~Vl 169 (344)
|...|+|+|||.| ||+|||||||||++.+||||+||+||||.. |+.++.++..++||..+||+.+ ++|.++.+.
T Consensus 90 hTGAGILsMANaG-PnTNgSQFFiTLAPt~~LDGKHTIFGRV~~-Gm~vikr~G~v~Td~~DRPi~~-~kIika~~~ 163 (164)
T KOG0881|consen 90 HTGAGILSMANAG-PNTNGSQFFITLAPTQWLDGKHTIFGRVCS-GMEVIKRMGMVETDNSDRPIDE-VKIIKAYPS 163 (164)
T ss_pred ccchhhhhhhccC-CCCCCceEEEEecCccccCCcceeehhhhh-hHHHHHhhcceecCCCCCCccc-eeeEeeecC
Confidence 9999999999999 999999999999999999999999999995 7888999999999999999999 999988653
No 5
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=5.3e-48 Score=341.55 Aligned_cols=159 Identities=47% Similarity=0.881 Sum_probs=153.7
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCCccCceeEEeecCcEEEccCCCCCCCCCCcccCCCCCCCcCCCccc
Q 042423 14 KVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGDPTGTGTGGESIYGGNFADEFHSRLRF 93 (344)
Q Consensus 14 kV~l~Ts~G~I~IEL~~d~aP~tv~NFl~Lc~~g~Ydgt~FhRVip~fiIQgGDp~g~G~gg~siyg~~f~dE~~~rlk~ 93 (344)
+|+|+|+.|+|+|+||++.||+||+||++||+.|||+|+.||||+|+|+|||||+.++|.++.++||.++++|..++++|
T Consensus 1 ~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~g~~~~~~~g~~~~~E~~~~~~h 80 (159)
T cd01923 1 YVRLHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEFKPNLSH 80 (159)
T ss_pred CEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEecccCCCCCCCccccCCccCcccccCcCc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred ccCceeEEecCCCCCCCCceEEEecCCCCCCCCCCeEEEEEEcCceeeeeecccccCCCCCCCCCCCcEEEEEEEecCCC
Q 042423 94 NHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVEVLWNPF 173 (344)
Q Consensus 94 ~~rGlVsma~~g~~~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL~kI~~v~td~~~rP~~~~i~I~~~~Vl~~PF 173 (344)
+++|+|+||+++ +++++|||||||+++|+||++|+|||||++ |+++|++|+.++++.+++|+.+ ++|.+|+|+.|||
T Consensus 81 ~~~G~v~ma~~~-~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~-G~~vl~~I~~~~~~~~~~P~~~-i~I~~~~i~~dpf 157 (159)
T cd01923 81 DGRGVLSMANSG-PNTNGSQFFITYRSCKHLDGKHTVFGRVVG-GLETLEAMENVPDPGTDRPKEE-IKIEDTSVFVDPF 157 (159)
T ss_pred CCCcEEEEeeCC-CCCcccEEEEECCCCcccCCCccEEEEEEc-CHHHHHHHHcCCCCCCCCCCCC-eEEEEeEEEeCCC
Confidence 999999999998 899999999999999999999999999996 8999999999999999999999 9999999999999
Q ss_pred Cc
Q 042423 174 ED 175 (344)
Q Consensus 174 ~D 175 (344)
+.
T Consensus 158 ~~ 159 (159)
T cd01923 158 EE 159 (159)
T ss_pred CC
Confidence 74
No 6
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=9.3e-47 Score=335.57 Aligned_cols=157 Identities=39% Similarity=0.700 Sum_probs=148.7
Q ss_pred EEEecceeEEEEEcCCCChHHHHHHHHHHhcCCccCceeEEeecCcEEEccCCCCCCCCCCcccC-------CCCCCCcC
Q 042423 16 IVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGDPTGTGTGGESIYG-------GNFADEFH 88 (344)
Q Consensus 16 ~l~Ts~G~I~IEL~~d~aP~tv~NFl~Lc~~g~Ydgt~FhRVip~fiIQgGDp~g~G~gg~siyg-------~~f~dE~~ 88 (344)
+|+|+.|+|+||||++.||+||+||++||+.+||+|+.||||+++|+|||||+.++|.++.++|+ ..|.+|..
T Consensus 1 ll~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~g~~~~~~~~~~~~~~~~~~~~e~~ 80 (166)
T cd01921 1 LLETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGESIYSQLYGRQARFFEPEIL 80 (166)
T ss_pred CcEeccCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCCCCCCcccccccccccCcccCcccC
Confidence 47999999999999999999999999999999999999999999999999999999999888875 35788888
Q ss_pred CCcccccCceeEEecCCCCCCCCceEEEecCC-CCCCCCCCeEEEEEEcCceeeeeecccccCCCCCCCCCCCcEEEEEE
Q 042423 89 SRLRFNHRGLVACANAGSPHSNGSQFFISLDR-CDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVE 167 (344)
Q Consensus 89 ~rlk~~~rGlVsma~~g~~~sngSQFFITL~~-~p~LDgk~tVFGrVvg~gi~vL~kI~~v~td~~~rP~~~~i~I~~~~ 167 (344)
++++|+++|+||||+.+ +++++|||||||++ +|+||++|+|||||++ |+++|++|+.++++.+++|+.+ |+|.+|+
T Consensus 81 ~~~~h~~~G~l~ma~~~-~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~-G~dvv~~I~~~~~~~~~~P~~~-i~I~~~~ 157 (166)
T cd01921 81 PLLKHSKKGTVSMVNAG-DNLNGSQFYITLGENLDYLDGKHTVFGQVVE-GFDVLEKINDAIVDDDGRPLKD-IRIKHTH 157 (166)
T ss_pred CccccCCceEEEEeECC-CCCccceEEEEcCCCCcccCCCccEEEEEEc-CHHHHHHHHcCCCCCCCCCCCC-eEEEEEE
Confidence 88999999999999998 89999999999975 8999999999999996 8999999999999999999999 9999999
Q ss_pred EecCCCCc
Q 042423 168 VLWNPFED 175 (344)
Q Consensus 168 Vl~~PF~D 175 (344)
|+.|||+|
T Consensus 158 i~~~pf~~ 165 (166)
T cd01921 158 ILDDPFPD 165 (166)
T ss_pred EECCCCCC
Confidence 99999998
No 7
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=3.9e-45 Score=321.60 Aligned_cols=152 Identities=49% Similarity=0.849 Sum_probs=146.1
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCCccCceeEEeecCcEEEccCCCCCCCCCCcccCCCCCCCcCCCccc
Q 042423 14 KVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGDPTGTGTGGESIYGGNFADEFHSRLRF 93 (344)
Q Consensus 14 kV~l~Ts~G~I~IEL~~d~aP~tv~NFl~Lc~~g~Ydgt~FhRVip~fiIQgGDp~g~G~gg~siyg~~f~dE~~~rlk~ 93 (344)
.|+|+|+.|+|+||||++.||+||+||++||+.|||+|+.||||+++|++|||||.++|.++.++||.+|++|+.+.++|
T Consensus 2 ~v~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~~ 81 (153)
T cd01928 2 SVTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKGGESIWGKKFEDEFRETLKH 81 (153)
T ss_pred EEEEEEccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEccccCCCCCCCCccCCCccccccccCCCc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred ccCceeEEecCCCCCCCCceEEEecCCCCCCCCCCeEEEEEEcCceeeeeecccccCCCCCCCCCCCcEEEEEEE
Q 042423 94 NHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVEV 168 (344)
Q Consensus 94 ~~rGlVsma~~g~~~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL~kI~~v~td~~~rP~~~~i~I~~~~V 168 (344)
+++|+|+||+.+ +++++|||||+++++|+||++|+|||+|++ |+++|++|+.++++.+++|..+ |+|.+|.|
T Consensus 82 ~~~G~v~ma~~~-~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~-G~dvl~~I~~~~~~~~~~P~~~-i~I~~~~~ 153 (153)
T cd01928 82 DSRGVVSMANNG-PNTNGSQFFITYAKQPHLDGKYTVFGKVID-GFETLDTLEKLPVDKKYRPLEE-IRIKDVTI 153 (153)
T ss_pred CCCcEEEEeeCC-CCCcccEEEEEeCCCcccCCCceEEEEEEe-CHHHHHHHHcCCCCCCCCCcCC-eEEEEeEC
Confidence 999999999998 899999999999999999999999999996 8999999999999999999999 99999864
No 8
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-45 Score=357.96 Aligned_cols=158 Identities=38% Similarity=0.646 Sum_probs=149.0
Q ss_pred CCcEEEEEec-----ceeEEEEEcCCCChHHHHHHHHHHhc--C---------CccCceeEEeecCcEEEccCCC-CCCC
Q 042423 11 TKGKVIVKTT-----HGPIDIELWPKEAPKAVRNFVQLCLE--G---------YFDNTIFHRIIKGFLVQGGDPT-GTGT 73 (344)
Q Consensus 11 t~~kV~l~Ts-----~G~I~IEL~~d~aP~tv~NFl~Lc~~--g---------~Ydgt~FhRVip~fiIQgGDp~-g~G~ 73 (344)
+..+|.|..+ .|+|+||||.+.||+||+||+.||.+ | .|.|+.||||+++|||||||.+ |+|+
T Consensus 7 ~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGt 86 (372)
T KOG0546|consen 7 TNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGT 86 (372)
T ss_pred CCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCC
Confidence 5678988876 78999999999999999999999985 2 3999999999999999999999 9999
Q ss_pred CCCcccCCCCCCCcCCCcccccCceeEEecCCCCCCCCceEEEecCCCCCCCCCCeEEEEEEcCceeeeeecccccCCCC
Q 042423 74 GGESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKN 153 (344)
Q Consensus 74 gg~siyg~~f~dE~~~rlk~~~rGlVsma~~g~~~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL~kI~~v~td~~ 153 (344)
||+||||..|.||++ -|+|++.|+|||||.| |||||||||||+.++|||||+|+|||+|+. |..++..|+.++||..
T Consensus 87 GGeSIYG~~FdDEnF-~lKHdrpflLSMAN~G-pNTNgSQFFITT~p~PHLdGkHVVFGqVI~-G~~VVr~IEn~~~d~~ 163 (372)
T KOG0546|consen 87 GGESIYGEKFDDENF-ELKHDRPFLLSMANRG-PNTNGSQFFITTVPTPHLDGKHVVFGQVIK-GKEVVREIENLETDEE 163 (372)
T ss_pred Ccccccccccccccc-eeccCcchhhhhhcCC-CCCCCcceEEeCCCCCCcCCceeEEeeEee-chhHHHHHhccccccC
Confidence 999999999999999 6999999999999999 999999999999999999999999999996 7888999999999999
Q ss_pred CCCCCCCcEEEEEEEecCC
Q 042423 154 DRPLDPPPKLLSVEVLWNP 172 (344)
Q Consensus 154 ~rP~~~~i~I~~~~Vl~~P 172 (344)
++|+.+ |+|.+|++|..-
T Consensus 164 skP~~d-V~I~dCGel~~~ 181 (372)
T KOG0546|consen 164 SKPLAD-VVISDCGELVKK 181 (372)
T ss_pred CCCccc-eEeccccccccc
Confidence 999999 999999998544
No 9
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=7e-45 Score=318.19 Aligned_cols=148 Identities=51% Similarity=0.923 Sum_probs=142.3
Q ss_pred EEEecceeEEEEEcCCCChHHHHHHHHHHhcCCccCceeEEeecCcEEEccCCCCCCCCCCcccCCCCCCCcCCCccccc
Q 042423 16 IVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGDPTGTGTGGESIYGGNFADEFHSRLRFNH 95 (344)
Q Consensus 16 ~l~Ts~G~I~IEL~~d~aP~tv~NFl~Lc~~g~Ydgt~FhRVip~fiIQgGDp~g~G~gg~siyg~~f~dE~~~rlk~~~ 95 (344)
+|+|++|+|+||||++.||+||+||++||+.|||+|+.||||+|+|+|||||+.++|.++.++|+.+|++|..+.++|++
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~h~~ 80 (148)
T cd01927 1 IIHTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTGGESIWGKEFEDEFSPSLKHDR 80 (148)
T ss_pred CeEeccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEecccCCCCCCCCcccCCccccccccccCcCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999988899999
Q ss_pred CceeEEecCCCCCCCCceEEEecCCCCCCCCCCeEEEEEEcCceeeeeecccccCCCCCCCCCCCcEEEEE
Q 042423 96 RGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSV 166 (344)
Q Consensus 96 rGlVsma~~g~~~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL~kI~~v~td~~~rP~~~~i~I~~~ 166 (344)
+|+||||+.+ +++++|||||||+++|+||++|+|||+|++ |+++|++|+.++++.+++|+.+ |+|.++
T Consensus 81 ~G~l~ma~~~-~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~-G~dvl~~I~~~~~~~~~~P~~~-i~I~~~ 148 (148)
T cd01927 81 PYTLSMANAG-PNTNGSQFFITTVATPWLDNKHTVFGRVVK-GMDVVQRIENVKTDKNDRPYED-IKIINI 148 (148)
T ss_pred CeEEEEeeCC-CCCCCceEEEEcCCCcccCCCceEEEEEEc-CHHHHHHHHcCCCCCCCCCcCC-eEEEeC
Confidence 9999999998 999999999999999999999999999995 8999999999999999999999 999864
No 10
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-45 Score=359.15 Aligned_cols=152 Identities=51% Similarity=0.909 Sum_probs=148.8
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCCccCceeEEeecCcEEEccCCCCCCCCCCcccCCCCCCCcCCCccc
Q 042423 14 KVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGDPTGTGTGGESIYGGNFADEFHSRLRF 93 (344)
Q Consensus 14 kV~l~Ts~G~I~IEL~~d~aP~tv~NFl~Lc~~g~Ydgt~FhRVip~fiIQgGDp~g~G~gg~siyg~~f~dE~~~rlk~ 93 (344)
.+++||+.|+|.|.||+.+||+||+||-..|+.|||+|..||||+++||||+|||.|+|+||+||||..|.||+|++|+|
T Consensus 406 ~aiihtt~gdi~~kl~p~ecpktvenf~th~rngyy~~~~fhriik~fmiqtgdp~g~gtggesiwg~dfedefh~~lrh 485 (558)
T KOG0882|consen 406 AAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNGYYDNHTFHRIIKGFMIQTGDPLGDGTGGESIWGKDFEDEFHPNLRH 485 (558)
T ss_pred ceEEEecccceEEEecccccchhhhhhhccccCccccCcchHHhhhhheeecCCCCCCCCCCcccccccchhhcCccccc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCceeEEecCCCCCCCCceEEEecCCCCCCCCCCeEEEEEEcCceeeeeecccccCCCCCCCCCCCcEEEEEEE
Q 042423 94 NHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVEV 168 (344)
Q Consensus 94 ~~rGlVsma~~g~~~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL~kI~~v~td~~~rP~~~~i~I~~~~V 168 (344)
+++-+|+|||+| ||+||||||||+.+.|||||+|||||||+. ||+++.+|+++.|+.++||+.+ ++|.++.|
T Consensus 486 drpft~smanag-~ntngsqffit~~~tpwld~khtvfgrv~~-gm~vvqri~~v~t~k~drp~e~-v~iinisv 557 (558)
T KOG0882|consen 486 DRPFTVSMANAG-PNTNGSQFFITTVPTPWLDGKHTVFGRVTA-GMDVVQRIEQVKTDKYDRPYED-VKIINISV 557 (558)
T ss_pred CCCceEEecccC-CCCCCceEEEEecCccccCCcceeEEEEec-chhHHhHhhhcccCcCCCCCCc-eeEEEEec
Confidence 999999999999 999999999999999999999999999996 8999999999999999999999 99999876
No 11
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-44 Score=304.54 Aligned_cols=158 Identities=44% Similarity=0.775 Sum_probs=154.3
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCCccCceeEEeecCcEEEccCCCCCCCCCCcccCCCCCCCcCCCccc
Q 042423 14 KVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGDPTGTGTGGESIYGGNFADEFHSRLRF 93 (344)
Q Consensus 14 kV~l~Ts~G~I~IEL~~d~aP~tv~NFl~Lc~~g~Ydgt~FhRVip~fiIQgGDp~g~G~gg~siyg~~f~dE~~~rlk~ 93 (344)
.|+|+|+.|+|.||||++.+|+||+||+.||...||++|+|||-+|+|++|+|||+.+|.||.||||.+|.||+..-|+|
T Consensus 2 svtlht~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~~tgrgg~siwg~~fede~~~~lkh 81 (161)
T KOG0884|consen 2 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPTHTGRGGNSIWGKKFEDEYSEYLKH 81 (161)
T ss_pred eEEEeeccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCCCCCCCCccccCCcchHHHHHHHhh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCceeEEecCCCCCCCCceEEEecCCCCCCCCCCeEEEEEEcCceeeeeecccccCCCC-CCCCCCCcEEEEEEEecCC
Q 042423 94 NHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKN-DRPLDPPPKLLSVEVLWNP 172 (344)
Q Consensus 94 ~~rGlVsma~~g~~~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL~kI~~v~td~~-~rP~~~~i~I~~~~Vl~~P 172 (344)
+.||.|+|||+| |++|+||||||.+..||||-+|||||+|++ |+++|+.|+.+++++. .||+.. +.|.++.|-.||
T Consensus 82 ~~rg~vsmanng-p~tn~sqffity~kq~hldmkytvfgkvid-g~etldele~l~v~~ktyrpl~~-~~ik~itihanp 158 (161)
T KOG0884|consen 82 NVRGVVSMANNG-PNTNGSQFFITYGKQPHLDMKYTVFGKVID-GLETLDELEKLPVNEKTYRPLND-VHIKDITIHANP 158 (161)
T ss_pred ccceeEEcccCC-CCCCCceEEEEecCCCccceeEeeeeeecc-chhhHHHHhhcccCccccccchh-eeeeeeEEecCc
Confidence 999999999999 999999999999999999999999999996 9999999999999976 899999 999999999999
Q ss_pred CC
Q 042423 173 FE 174 (344)
Q Consensus 173 F~ 174 (344)
|.
T Consensus 159 ~a 160 (161)
T KOG0884|consen 159 FA 160 (161)
T ss_pred CC
Confidence 94
No 12
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=5.7e-44 Score=311.93 Aligned_cols=146 Identities=51% Similarity=0.918 Sum_probs=139.9
Q ss_pred EEEecceeEEEEEcCCCChHHHHHHHHHHhcCCccCceeEEeecCcEEEccCCCCCCCCCCcccCCCCCCCcCCCccccc
Q 042423 16 IVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGDPTGTGTGGESIYGGNFADEFHSRLRFNH 95 (344)
Q Consensus 16 ~l~Ts~G~I~IEL~~d~aP~tv~NFl~Lc~~g~Ydgt~FhRVip~fiIQgGDp~g~G~gg~siyg~~f~dE~~~rlk~~~ 95 (344)
+|+|+.|+|+|+||++.||+||+||++||+.|||+++.||||+|+|+|||||+.++|.++.++||.+|++|..++++|++
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~~~~~~~~~~~~~e~~~~~~h~~ 80 (146)
T cd01922 1 TLETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRGGASIYGKKFEDEIHPELKHTG 80 (146)
T ss_pred CeEeccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEecccCCCCCCcccccCCCcccccccCcCCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred CceeEEecCCCCCCCCceEEEecCCCCCCCCCCeEEEEEEcCceeeeeecccccCCCCCCCCCCCcEEEE
Q 042423 96 RGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLS 165 (344)
Q Consensus 96 rGlVsma~~g~~~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL~kI~~v~td~~~rP~~~~i~I~~ 165 (344)
+|+||||+.+ +++++||||||++++|+||++|+|||+|+. |+++|++|+.++++ +++|..+ |+|.+
T Consensus 81 ~G~l~ma~~~-~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~-G~dvl~~I~~~~~~-~~~P~~~-I~I~~ 146 (146)
T cd01922 81 AGILSMANAG-PNTNGSQFFITLAPTPWLDGKHTIFGRVSK-GMKVIENMVEVQTQ-TDRPIDE-VKILK 146 (146)
T ss_pred CeEEEEeeCC-CCCCccEEEEEcCCCcccCCCCCEEEEEEc-CHHHHHHHHhCCCC-CCCcCCC-eEEeC
Confidence 9999999998 999999999999999999999999999996 89999999999998 8899999 88863
No 13
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-44 Score=314.98 Aligned_cols=149 Identities=50% Similarity=0.833 Sum_probs=135.6
Q ss_pred EEEEecceeEEEEEcCCCChHHHHHHHHHHhcCCccCceeEEeecCcEEEccCCCCC-CCCCCcccCCCCCCCcCCCccc
Q 042423 15 VIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGDPTGT-GTGGESIYGGNFADEFHSRLRF 93 (344)
Q Consensus 15 V~l~Ts~G~I~IEL~~d~aP~tv~NFl~Lc~~g~Ydgt~FhRVip~fiIQgGDp~g~-G~gg~siyg~~f~dE~~~rlk~ 93 (344)
|+++|+.|+|+|+||++.||+||+||++||+.|||+|+.||||+++||||||||+++ |.||++ ++|++|+++.. |
T Consensus 2 v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~~---~~f~~E~~~~~-~ 77 (158)
T COG0652 2 VILETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGPG---PPFKDENFALN-G 77 (158)
T ss_pred ceeeccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCCCCCCCCC---CCCcccccccc-c
Confidence 789999999999999999999999999999999999999999999999999999987 888874 89999988643 4
Q ss_pred cc--CceeEEecCCCCCCCCceEEEecCCCCCCCCCCeEEEEEEcCceeeeeecccccCCCC----CCCCCCCcEEEEEE
Q 042423 94 NH--RGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKN----DRPLDPPPKLLSVE 167 (344)
Q Consensus 94 ~~--rGlVsma~~g~~~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL~kI~~v~td~~----~rP~~~~i~I~~~~ 167 (344)
.+ ||+|||||.+.|++|+||||||+.++||||++|+|||+|+. |+++|++|..+.+... +.|..+ ++|.++.
T Consensus 78 ~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~-GmdvvdkI~~~~~~~~~~~~~~~~~~-~~i~~~~ 155 (158)
T COG0652 78 DRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVE-GMDVVDKIKNGDTDDSGYVQDVPADP-VKILSVK 155 (158)
T ss_pred ccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEeh-hHHHHHHHHcCCccCCCcccCCCCCC-eEEeeee
Confidence 44 99999999999999999999999999999999999999996 8999999999888764 456566 8888877
Q ss_pred Ee
Q 042423 168 VL 169 (344)
Q Consensus 168 Vl 169 (344)
++
T Consensus 156 ~~ 157 (158)
T COG0652 156 IV 157 (158)
T ss_pred ee
Confidence 65
No 14
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-44 Score=322.85 Aligned_cols=163 Identities=41% Similarity=0.706 Sum_probs=153.3
Q ss_pred CCCCCCCCCcEEEEEec-----ceeEEEEEcCCCChHHHHHHHHHHhc---CC-ccCceeEEeecCcEEEccCCC-CCCC
Q 042423 4 VYVLEPPTKGKVIVKTT-----HGPIDIELWPKEAPKAVRNFVQLCLE---GY-FDNTIFHRIIKGFLVQGGDPT-GTGT 73 (344)
Q Consensus 4 ~y~~ePpt~~kV~l~Ts-----~G~I~IEL~~d~aP~tv~NFl~Lc~~---g~-Ydgt~FhRVip~fiIQgGDp~-g~G~ 73 (344)
.|...|+.+.+|.|... .|+|+|.||++.+|+||.||.+||.. +| |.|+.||||+|+|||||||.+ ++|+
T Consensus 31 ~~~~~p~vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gt 110 (217)
T KOG0880|consen 31 KYEPGPKVTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGT 110 (217)
T ss_pred ccCCCCcceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCC
Confidence 47888999999988754 78999999999999999999999993 34 999999999999999999999 6799
Q ss_pred CCCcccCCCCCCCcCCCcccccCceeEEecCCCCCCCCceEEEecCCCCCCCCCCeEEEEEEcCceeeeeecccccCCCC
Q 042423 74 GGESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKN 153 (344)
Q Consensus 74 gg~siyg~~f~dE~~~rlk~~~rGlVsma~~g~~~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL~kI~~v~td~~ 153 (344)
||.|+||..|+||++ .|+|+++|.|||||.| |++||||||||+...+||||+|+|||+|+. ||++|.+|+.++||++
T Consensus 111 Gg~SIyG~~F~DENf-~LkH~rpG~lSMAn~G-pDtNGsQFfItT~~t~wLDGkhVVFGqVl~-Gmdvv~~Ie~~~TD~~ 187 (217)
T KOG0880|consen 111 GGKSIYGEKFPDENF-KLKHDRPGRLSMANAG-PDTNGSQFFITTVKTPWLDGKHVVFGQVLE-GMDVVRKIENVKTDER 187 (217)
T ss_pred CCeEeecCCCCCccc-eeecCCCceEeeeccC-CCCCCceEEEEecCCccccCceeEEeeehh-hHHHHHHHHhcccCCC
Confidence 999999999999998 6999999999999999 999999999999999999999999999996 8999999999999999
Q ss_pred CCCCCCCcEEEEEEEec
Q 042423 154 DRPLDPPPKLLSVEVLW 170 (344)
Q Consensus 154 ~rP~~~~i~I~~~~Vl~ 170 (344)
|+|+++ ++|.+|.-|.
T Consensus 188 dkP~e~-v~I~~~g~l~ 203 (217)
T KOG0880|consen 188 DKPLED-VVIANCGELP 203 (217)
T ss_pred CCcccc-EEEeecCccc
Confidence 999999 9999998663
No 15
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=1.4e-40 Score=302.61 Aligned_cols=157 Identities=33% Similarity=0.533 Sum_probs=139.7
Q ss_pred CCCCCcEEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCCccCceeEEeecCcEEEccCCCCCCCCCCcccCCCCCCCc
Q 042423 8 EPPTKGKVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGDPTGTGTGGESIYGGNFADEF 87 (344)
Q Consensus 8 ePpt~~kV~l~Ts~G~I~IEL~~d~aP~tv~NFl~Lc~~g~Ydgt~FhRVip~fiIQgGDp~g~G~gg~siyg~~f~dE~ 87 (344)
-++...+|+|+|+.|+|+|+||++.||+||+||++||+.|||+|+.||||+|+|+||||++.+... ...++.+|.+|.
T Consensus 24 ~~~~~~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~--~~~~~~~~~~e~ 101 (190)
T PRK10903 24 AAKGDPHVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQ--QKKPNPPIKNEA 101 (190)
T ss_pred ccCCCcEEEEEeccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEEeCCcCCCCC--CCCCCCcccCcc
Confidence 345667899999999999999999999999999999999999999999999999999999875432 233577899997
Q ss_pred CCCcccccCceeEEecCCCCCCCCceEEEecCCCCCCCC-----CCeEEEEEEcCceeeeeecccccCCC----CCCCCC
Q 042423 88 HSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDR-----KNTIFGKVTGDSIFNLLRLGEVDTDK----NDRPLD 158 (344)
Q Consensus 88 ~~rlk~~~rGlVsma~~g~~~sngSQFFITL~~~p~LDg-----k~tVFGrVvg~gi~vL~kI~~v~td~----~~rP~~ 158 (344)
.+.+ |+.+|+||||+.+.+++|+||||||++++++||+ +|||||+|++ |+++|++|+.++++. +++|..
T Consensus 102 ~~~l-~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~e-G~dvl~~I~~~~~~~~~~~~~~P~~ 179 (190)
T PRK10903 102 DNGL-RNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVK-GMDVADKISQVPTHDVGPYQNVPSK 179 (190)
T ss_pred cccC-cCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEec-CHHHHHHHHcCCCCCCCCCCCcccC
Confidence 7655 5689999999977689999999999999999984 8999999995 899999999999976 579999
Q ss_pred CCcEEEEEEEe
Q 042423 159 PPPKLLSVEVL 169 (344)
Q Consensus 159 ~~i~I~~~~Vl 169 (344)
+ ++|.+|+|+
T Consensus 180 ~-v~I~~~~v~ 189 (190)
T PRK10903 180 P-VVILSAKVL 189 (190)
T ss_pred C-eEEEEEEEe
Confidence 9 999999886
No 16
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=1.7e-40 Score=312.79 Aligned_cols=161 Identities=27% Similarity=0.353 Sum_probs=146.9
Q ss_pred CCCCCcEEEEEec-----ceeEEEEEcCCCChHHHHHHHHHHhcC-----------CccCceeEEeecC-cEEEccCCCC
Q 042423 8 EPPTKGKVIVKTT-----HGPIDIELWPKEAPKAVRNFVQLCLEG-----------YFDNTIFHRIIKG-FLVQGGDPTG 70 (344)
Q Consensus 8 ePpt~~kV~l~Ts-----~G~I~IEL~~d~aP~tv~NFl~Lc~~g-----------~Ydgt~FhRVip~-fiIQgGDp~g 70 (344)
++.++.+|.|+|+ .|+|+|+||.+.||+||+||+.||++. +|+|+.||||+++ |+|||||+.+
T Consensus 48 ~~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~ 127 (249)
T PTZ00221 48 EEQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS 127 (249)
T ss_pred cCCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC
Confidence 6677889999988 567999999999999999999999843 3999999999986 8999999874
Q ss_pred CCCCCCcccCCCCCCCcCCCcccccCceeEEecCCCCCCCCceEEEecCCCCCCCCCCeEEEEEEcCceeeeeecccccC
Q 042423 71 TGTGGESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLGEVDT 150 (344)
Q Consensus 71 ~G~gg~siyg~~f~dE~~~rlk~~~rGlVsma~~g~~~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL~kI~~v~t 150 (344)
. +.++||.+|++|.+ .++|+++|+|+||+.| +++|||||||||.++|+||++|+|||+|+. |+++|++|+.+++
T Consensus 128 ~---g~s~~G~~f~dE~~-~~~h~~~G~LsMan~G-pntngSQFfITl~~~p~LDgk~vVFGrVve-GmdVv~kIe~v~~ 201 (249)
T PTZ00221 128 F---NVSSTGTPIADEGY-RHRHTERGLLTMISEG-PHTSGSVFGITLGPSPSLDFKQVVFGKAVD-DLSLLEKLESLPL 201 (249)
T ss_pred C---CccCCCCcccCccc-cccCCCCCEEEeCcCC-CCCccceEEEECCCCCccCCCceEEEEEEe-CHHHHHHHHcCCc
Confidence 3 45678999999977 6889999999999999 999999999999999999999999999995 8999999999999
Q ss_pred CCCCCCCCCCcEEEEEEEecCCCCc
Q 042423 151 DKNDRPLDPPPKLLSVEVLWNPFED 175 (344)
Q Consensus 151 d~~~rP~~~~i~I~~~~Vl~~PF~D 175 (344)
+.+++|..+ |+|.+|+++.+|=+.
T Consensus 202 d~~grP~~~-V~I~~Cgvl~~~~p~ 225 (249)
T PTZ00221 202 DDVGRPLLP-VTVSFCGALTGEKPP 225 (249)
T ss_pred CCCCCCCCC-eEEEECeEecCCCCC
Confidence 999999999 999999999988764
No 17
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=2.6e-40 Score=299.87 Aligned_cols=154 Identities=40% Similarity=0.743 Sum_probs=141.7
Q ss_pred cEEEEEe-----cceeEEEEEcCCCChHHHHHHHHHHhcCC--------ccCceeEEeecCcEEEccCCC-CCCCCCCcc
Q 042423 13 GKVIVKT-----THGPIDIELWPKEAPKAVRNFVQLCLEGY--------FDNTIFHRIIKGFLVQGGDPT-GTGTGGESI 78 (344)
Q Consensus 13 ~kV~l~T-----s~G~I~IEL~~d~aP~tv~NFl~Lc~~g~--------Ydgt~FhRVip~fiIQgGDp~-g~G~gg~si 78 (344)
.+|.|.+ +.|+|+|+||.+.||+||+||++||.++| |++|.||||+++|+|||||+. ++|+|+.++
T Consensus 19 ~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~~ 98 (186)
T PLN03149 19 PVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVSI 98 (186)
T ss_pred CEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCcccc
Confidence 4576764 46999999999999999999999998654 999999999999999999975 788999999
Q ss_pred cCCCCCCCcCCCcccccCceeEEecCCCCCCCCceEEEecCCCCCCCCCCeEEEEEEcCceeeeeecccccCCCCCCCCC
Q 042423 79 YGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLD 158 (344)
Q Consensus 79 yg~~f~dE~~~rlk~~~rGlVsma~~g~~~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL~kI~~v~td~~~rP~~ 158 (344)
|+..|++|.+ .++|+++|+|+||+.+ +++++||||||++++|+||++|+|||+|+++|+++|++|+.++++.+++|..
T Consensus 99 ~g~~f~~e~~-~~~h~~~G~lsma~~g-~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~ 176 (186)
T PLN03149 99 YGSKFEDENF-IAKHTGPGLLSMANSG-PNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKL 176 (186)
T ss_pred cCCccCCccc-ccccCCCCEEEEeeCC-CCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcC
Confidence 9999999976 4788899999999998 9999999999999999999999999999955999999999999999999999
Q ss_pred CCcEEEEEEEe
Q 042423 159 PPPKLLSVEVL 169 (344)
Q Consensus 159 ~~i~I~~~~Vl 169 (344)
+ |+|.+|+++
T Consensus 177 ~-i~I~~cG~~ 186 (186)
T PLN03149 177 A-CVISECGEM 186 (186)
T ss_pred C-eEEEeCEeC
Confidence 9 999999874
No 18
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-41 Score=286.24 Aligned_cols=158 Identities=39% Similarity=0.741 Sum_probs=148.4
Q ss_pred CCCCCCCcEEEEEe-----cceeEEEEEcCCCChHHHHHHHHHHhcCC--------ccCceeEEeecCcEEEccCCC-CC
Q 042423 6 VLEPPTKGKVIVKT-----THGPIDIELWPKEAPKAVRNFVQLCLEGY--------FDNTIFHRIIKGFLVQGGDPT-GT 71 (344)
Q Consensus 6 ~~ePpt~~kV~l~T-----s~G~I~IEL~~d~aP~tv~NFl~Lc~~g~--------Ydgt~FhRVip~fiIQgGDp~-g~ 71 (344)
++.+|+...|.|.. ..|+|.||||++.+|+|++||.++|.+.| |+++.||||+++|||||||.. ++
T Consensus 4 ~~r~~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gD 83 (177)
T KOG0879|consen 4 QLRSPNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGD 83 (177)
T ss_pred cccCCCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCC
Confidence 45677777787764 47899999999999999999999999876 999999999999999999987 89
Q ss_pred CCCCCcccCCCCCCCcCCCcccccCceeEEecCCCCCCCCceEEEecCCCCCCCCCCeEEEEEEcCceeeeeecccccCC
Q 042423 72 GTGGESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLGEVDTD 151 (344)
Q Consensus 72 G~gg~siyg~~f~dE~~~rlk~~~rGlVsma~~g~~~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL~kI~~v~td 151 (344)
|+|-.||||.+|+||++ .|+|..+|+|+|||+| +++||.|||||...+.|||++|+|||+|++ |+.++.+|+.+++.
T Consensus 84 GtG~~sIy~~~F~DENF-tlkH~~PGlLSMANsG-~~tNGCQFFITcakcdfLD~KHVVFGrvld-Glli~rkIEnvp~G 160 (177)
T KOG0879|consen 84 GTGVASIYGSTFPDENF-TLKHDGPGLLSMANSG-KDTNGCQFFITCAKCDFLDGKHVVFGRVLD-GLLIMRKIENVPTG 160 (177)
T ss_pred CceEEEEcCCCCCCcce-eeecCCCceeeccccC-CCCCCceEEEEecccccccCceEEEeeeeh-hhhhhhhhhcCCCC
Confidence 99999999999999999 6999999999999999 999999999999999999999999999995 89999999999999
Q ss_pred CCCCCCCCCcEEEEEE
Q 042423 152 KNDRPLDPPPKLLSVE 167 (344)
Q Consensus 152 ~~~rP~~~~i~I~~~~ 167 (344)
.+++|.-| +.|..|+
T Consensus 161 ~NnkPKl~-v~i~qCG 175 (177)
T KOG0879|consen 161 PNNKPKLP-VVIVQCG 175 (177)
T ss_pred CCCCCCCc-EEEeecc
Confidence 99999999 9999886
No 19
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=5.9e-40 Score=292.03 Aligned_cols=150 Identities=34% Similarity=0.584 Sum_probs=132.2
Q ss_pred EEEEecceeEEEEEcCCCChHHHHHHHHHHhcCCccCceeEEeecCcEEEccCCCCCCCCCCcccCCCCCCCcCCCcccc
Q 042423 15 VIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGDPTGTGTGGESIYGGNFADEFHSRLRFN 94 (344)
Q Consensus 15 V~l~Ts~G~I~IEL~~d~aP~tv~NFl~Lc~~g~Ydgt~FhRVip~fiIQgGDp~g~G~gg~siyg~~f~dE~~~rlk~~ 94 (344)
|+|+|+.|+|+|+||++.||+||+||++||+.|||+|+.||||+|+|+||||++.. +.+ ...++.+|++|....++|
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~~-~~~-~~~~~~~~~~e~~~~~~~- 78 (164)
T PRK10791 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEP-GMK-QKATKEPIKNEANNGLKN- 78 (164)
T ss_pred EEEEEccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcCC-CCC-cCCCCCCcCCcccccccC-
Confidence 78999999999999999999999999999999999999999999999999999752 222 223467889997766654
Q ss_pred cCceeEEecCCCCCCCCceEEEecCCCCCCC-------C-CCeEEEEEEcCceeeeeecccccCCCC----CCCCCCCcE
Q 042423 95 HRGLVACANAGSPHSNGSQFFISLDRCDWLD-------R-KNTIFGKVTGDSIFNLLRLGEVDTDKN----DRPLDPPPK 162 (344)
Q Consensus 95 ~rGlVsma~~g~~~sngSQFFITL~~~p~LD-------g-k~tVFGrVvg~gi~vL~kI~~v~td~~----~rP~~~~i~ 162 (344)
++|+||||+.+.|++|+|||||++.++++|| + +|||||+|++ |+++|++|+.++++.. ++|..+ |+
T Consensus 79 ~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~e-G~dvl~~I~~~~~~~~~~~~~~P~~~-v~ 156 (164)
T PRK10791 79 TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVE-GMDVVDKIKGVATGRSGMHQDVPKED-VI 156 (164)
T ss_pred CCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEec-CHHHHHHHHcCcCCCCCccCCCcCCC-eE
Confidence 8999999998769999999999999988876 3 7999999995 8999999999999863 799999 99
Q ss_pred EEEEEEe
Q 042423 163 LLSVEVL 169 (344)
Q Consensus 163 I~~~~Vl 169 (344)
|.+|.|.
T Consensus 157 I~~~~i~ 163 (164)
T PRK10791 157 IESVTVS 163 (164)
T ss_pred EEEEEEe
Confidence 9999875
No 20
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-40 Score=320.11 Aligned_cols=160 Identities=41% Similarity=0.727 Sum_probs=153.1
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCCccCceeEEeecCcEEEccCCCCCCCCCCcccCC-------CCCCC
Q 042423 14 KVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGDPTGTGTGGESIYGG-------NFADE 86 (344)
Q Consensus 14 kV~l~Ts~G~I~IEL~~d~aP~tv~NFl~Lc~~g~Ydgt~FhRVip~fiIQgGDp~g~G~gg~siyg~-------~f~dE 86 (344)
.|+|+||+|+|+|.||.+++|.||.|||.||+-.||+.|.||-|..+|++|.|||+|+|.||.|+||. .|..|
T Consensus 2 sVlieTtlGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQTGDPtGtG~GG~si~~~lyG~q~rffeaE 81 (479)
T KOG0415|consen 2 SVLIETTLGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQTGDPTGTGDGGESIYGVLYGEQARFFEAE 81 (479)
T ss_pred cEEEEeecccEEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceeecCCCCCCCCCcceeeeecccccchhhhhh
Confidence 38999999999999999999999999999999999999999999999999999999999999999953 48899
Q ss_pred cCCCcccccCceeEEecCCCCCCCCceEEEecCC-CCCCCCCCeEEEEEEcCceeeeeecccccCCCCCCCCCCCcEEEE
Q 042423 87 FHSRLRFNHRGLVACANAGSPHSNGSQFFISLDR-CDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLS 165 (344)
Q Consensus 87 ~~~rlk~~~rGlVsma~~g~~~sngSQFFITL~~-~p~LDgk~tVFGrVvg~gi~vL~kI~~v~td~~~rP~~~~i~I~~ 165 (344)
+++.++|+..|+|+|++.| .|.+||||||||+. ...|||+|||||+|++ |+++|.+|++.-+|.+++|.++ |+|.+
T Consensus 82 ~~p~l~Hsk~G~vsmvs~g-~n~~gSQF~iTlgenLdyLDg~htvfGqV~E-G~dtl~kiNea~vD~~~rPykd-IRI~H 158 (479)
T KOG0415|consen 82 FLPKLKHSKMGTVSMVSAG-ENLNGSQFFITLGENLDYLDGKHTVFGQVAE-GFDTLTKINEAIVDPKNRPYKD-IRIKH 158 (479)
T ss_pred hcccccccccceEEeecCC-cccccceEEEEccccccccccccceeeehhh-hHHHHHHHHHHhcCCCCCcccc-eeeee
Confidence 9999999999999999999 89999999999976 5689999999999996 8999999999999999999999 99999
Q ss_pred EEEecCCCCcc
Q 042423 166 VEVLWNPFEDI 176 (344)
Q Consensus 166 ~~Vl~~PF~Di 176 (344)
+.||.+||+|.
T Consensus 159 TiiLdDPFddp 169 (479)
T KOG0415|consen 159 TIILDDPFDDP 169 (479)
T ss_pred eEEecCCCCCc
Confidence 99999999985
No 21
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=2.2e-39 Score=287.54 Aligned_cols=144 Identities=41% Similarity=0.753 Sum_probs=135.0
Q ss_pred ecceeEEEEEcCCCChHHHHHHHHHHhc--C------CccCceeEEeecCcEEEccCCC-CCCCCCCcccCCCCCCCcCC
Q 042423 19 TTHGPIDIELWPKEAPKAVRNFVQLCLE--G------YFDNTIFHRIIKGFLVQGGDPT-GTGTGGESIYGGNFADEFHS 89 (344)
Q Consensus 19 Ts~G~I~IEL~~d~aP~tv~NFl~Lc~~--g------~Ydgt~FhRVip~fiIQgGDp~-g~G~gg~siyg~~f~dE~~~ 89 (344)
++.|+|+|+||.+.||+||+||++||++ + ||+++.||||+|+|+|||||+. ++|.++.++||.+|++|..
T Consensus 12 ~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~~g~~~~~e~~- 90 (164)
T cd01926 12 EPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSIYGEKFPDENF- 90 (164)
T ss_pred eeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcccCCccCCCCc-
Confidence 5799999999999999999999999983 4 8999999999999999999986 7788899999999999965
Q ss_pred CcccccCceeEEecCCCCCCCCceEEEecCCCCCCCCCCeEEEEEEcCceeeeeecccccCCCCCCCCCCCcEEEEEE
Q 042423 90 RLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVE 167 (344)
Q Consensus 90 rlk~~~rGlVsma~~g~~~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL~kI~~v~td~~~rP~~~~i~I~~~~ 167 (344)
.++|+++|+|+||+.+ +++++|||||||+++|+||++|+|||+|++ |+++|++|+.++++ +++|+.+ |+|.+|+
T Consensus 91 ~~~h~~~G~lsma~~~-~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~-G~dvl~~i~~~~~~-~~~P~~~-i~I~~cG 164 (164)
T cd01926 91 KLKHTGPGLLSMANAG-PNTNGSQFFITTVKTPWLDGKHVVFGKVVE-GMDVVKKIENVGSG-NGKPKKK-VVIADCG 164 (164)
T ss_pred cccCCCccEEEeeECC-CCCcccEEEEEeCCCCccCCcccEEEEEEE-cHHHHHHHHcCCCC-CCCCcCC-eEEEECC
Confidence 6888899999999998 999999999999999999999999999995 89999999999999 8999999 9999984
No 22
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=2.8e-39 Score=284.79 Aligned_cols=145 Identities=36% Similarity=0.515 Sum_probs=128.8
Q ss_pred EEecceeEEEEEcCCCChHHHHHHHHHHhcCCccCceeEEeecCcEEEccCCCCCCCCCCcccCCCCCCCcCCCcccccC
Q 042423 17 VKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGDPTGTGTGGESIYGGNFADEFHSRLRFNHR 96 (344)
Q Consensus 17 l~Ts~G~I~IEL~~d~aP~tv~NFl~Lc~~g~Ydgt~FhRVip~fiIQgGDp~g~G~gg~siyg~~f~dE~~~rlk~~~r 96 (344)
|+|+.|+|+|+||++.||+||+||++||+.|||+|+.||||+|+|+||||++..++.+ ..++.++.+|....+ |+++
T Consensus 2 l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~--~~~~~~~~~e~~~~~-~~~~ 78 (155)
T cd01920 2 FQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQ--KETLKPIKNEAGNGL-SNTR 78 (155)
T ss_pred cEecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCCCCc--cccCCcccCcccccc-cCCc
Confidence 7899999999999999999999999999999999999999999999999998865443 234678888876544 5789
Q ss_pred ceeEEecCCCCCCCCceEEEecCCCCCCCC-----CCeEEEEEEcCceeeeeecccccCCCC----CCCCCCCcEEEEE
Q 042423 97 GLVACANAGSPHSNGSQFFISLDRCDWLDR-----KNTIFGKVTGDSIFNLLRLGEVDTDKN----DRPLDPPPKLLSV 166 (344)
Q Consensus 97 GlVsma~~g~~~sngSQFFITL~~~p~LDg-----k~tVFGrVvg~gi~vL~kI~~v~td~~----~rP~~~~i~I~~~ 166 (344)
|+||||+.+.+++++|||||+|+++++||+ +|||||+|++ |+++|++|+.++++.+ ++|+.+ |+|.++
T Consensus 79 G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~e-G~dvl~~I~~~~~~~~~~~~~~p~~~-v~i~~~ 155 (155)
T cd01920 79 GTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTE-GMDVVDKIAGVETYSFGSYQDVPVQD-VIIESA 155 (155)
T ss_pred eEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEec-CHHHHHHHHcCCccCCCCcCCCcCCC-eEEEEC
Confidence 999999987689999999999999999995 7999999996 8999999999999875 688888 888764
No 23
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=9.8e-39 Score=288.69 Aligned_cols=154 Identities=42% Similarity=0.729 Sum_probs=140.1
Q ss_pred CCcEEEEEec-----ceeEEEEEcCCCChHHHHHHHHHHh---------cCCccCceeEEeecCcEEEccCCC-CCCCCC
Q 042423 11 TKGKVIVKTT-----HGPIDIELWPKEAPKAVRNFVQLCL---------EGYFDNTIFHRIIKGFLVQGGDPT-GTGTGG 75 (344)
Q Consensus 11 t~~kV~l~Ts-----~G~I~IEL~~d~aP~tv~NFl~Lc~---------~g~Ydgt~FhRVip~fiIQgGDp~-g~G~gg 75 (344)
...+|.|+.+ .|+|+||||.+.||++|+||++||+ .+||+|+.||||+|+|+|||||+. ++|+++
T Consensus 14 ~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~~g 93 (183)
T PTZ00060 14 KRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGG 93 (183)
T ss_pred CCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCCCCCCC
Confidence 3457777654 5999999999999999999999997 469999999999999999999987 678899
Q ss_pred CcccCCCCCCCcCCCcccccCceeEEecCCCCCCCCceEEEecCCCCCCCCCCeEEEEEEcCceeeeeecccccCCCCCC
Q 042423 76 ESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDR 155 (344)
Q Consensus 76 ~siyg~~f~dE~~~rlk~~~rGlVsma~~g~~~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL~kI~~v~td~~~r 155 (344)
.++||..+++|.. .++|+++|+|+||+.+ +++++|||||||+++|+||++|+|||+|++ |+++|++|+.+++ .+++
T Consensus 94 ~~~~g~~~~~e~~-~~~h~~~G~lsma~~g-~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~-G~dvl~~I~~~~~-~~~~ 169 (183)
T PTZ00060 94 ESIYGRKFTDENF-KLKHDQPGLLSMANAG-PNTNGSQFFITTVPCPWLDGKHVVFGKVIE-GMEVVRAMEKEGT-QSGY 169 (183)
T ss_pred CcccccccCCccc-cccCCCCCEEEeccCC-CCCCcceEEEEeCCCcccCCCccEEEEEEc-cHHHHHHHHccCC-CCCC
Confidence 9999999999965 6788889999999998 999999999999999999999999999995 8999999999887 4689
Q ss_pred CCCCCcEEEEEEEe
Q 042423 156 PLDPPPKLLSVEVL 169 (344)
Q Consensus 156 P~~~~i~I~~~~Vl 169 (344)
|..+ |+|.+|+++
T Consensus 170 P~~~-v~I~~cg~~ 182 (183)
T PTZ00060 170 PKKP-VVVTDCGEL 182 (183)
T ss_pred CcCC-eEEEEeEEc
Confidence 9999 999999987
No 24
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=1.9e-38 Score=273.94 Aligned_cols=145 Identities=48% Similarity=0.773 Sum_probs=135.2
Q ss_pred EEEecceeEEEEEcCCCChHHHHHHHHHHhcCCccCceeEEeecCcEEEccCCCCCCCCCCcccCCCCCCCcCCCccccc
Q 042423 16 IVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGDPTGTGTGGESIYGGNFADEFHSRLRFNH 95 (344)
Q Consensus 16 ~l~Ts~G~I~IEL~~d~aP~tv~NFl~Lc~~g~Ydgt~FhRVip~fiIQgGDp~g~G~gg~siyg~~f~dE~~~rlk~~~ 95 (344)
+|+|+.|+|+|+||++.||++|+||++||+.+||+|+.|||++|+|+|||||+...+.++ +.++..+++|.++.+.|++
T Consensus 1 ~~~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~-~~~~~~~~~E~~~~~~~~~ 79 (146)
T cd00317 1 TLDTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG-SGPGYKFPDENFPLKYHHR 79 (146)
T ss_pred CeEeccCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCCCCCC-CcCCCccCCccccCcCcCC
Confidence 478999999999999999999999999999999999999999999999999998665543 5668899999998877889
Q ss_pred CceeEEecCCCCCCCCceEEEecCCCCCCCCCCeEEEEEEcCceeeeeecccccCCCCCCCCCCCcEEE
Q 042423 96 RGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLL 164 (344)
Q Consensus 96 rGlVsma~~g~~~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL~kI~~v~td~~~rP~~~~i~I~ 164 (344)
+|+|+|++.+ +++++|||||+|.++++||++|+|||+|++ |+++|++|+.++++++++|..+ |+|.
T Consensus 80 ~G~v~~~~~~-~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~-G~~vl~~I~~~~~~~~~~P~~~-i~I~ 145 (146)
T cd00317 80 RGTLSMANAG-PNTNGSQFFITTAPTPHLDGKHTVFGKVVE-GMDVVDKIERGDTDENGRPIKP-VTIS 145 (146)
T ss_pred CcEEEEeeCC-CCCcccEEEEECCCCcccCCCceEEEEEeC-CHHHHHHHHcCCCCCCCcCcCc-eEEe
Confidence 9999999988 789999999999999999999999999997 9999999999999999999999 8886
No 25
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=1.5e-36 Score=264.28 Aligned_cols=151 Identities=46% Similarity=0.732 Sum_probs=133.7
Q ss_pred EEEEEec-ceeEEEEEcCCCChHHHHHHHHHHhcCCccCceeEEeecCcEEEccCCCCCCCCCC--cccCCCCCCCcCCC
Q 042423 14 KVIVKTT-HGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGDPTGTGTGGE--SIYGGNFADEFHSR 90 (344)
Q Consensus 14 kV~l~Ts-~G~I~IEL~~d~aP~tv~NFl~Lc~~g~Ydgt~FhRVip~fiIQgGDp~g~G~gg~--siyg~~f~dE~~~r 90 (344)
.|.|+|+ .|+|+|+||++.||++|+||++||+.++|+|+.|||++|+++||||++.+.+..+. ...+.++++|....
T Consensus 1 ~~~i~t~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~E~~~~ 80 (155)
T PF00160_consen 1 FVDIETSGLGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPDEFNPS 80 (155)
T ss_dssp EEEEEETTEEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSSSGBTT
T ss_pred CEEEEeCCccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCCCcccccccCccccccccccc
Confidence 3789996 99999999999999999999999999999999999999999999999886554221 23455799998644
Q ss_pred cccccCceeEEecCC-CCCCCCceEEEecCCCCCCCCCCeEEEEEEcCceeeeeecccccCCCCCCCCCCCcEEEEEEE
Q 042423 91 LRFNHRGLVACANAG-SPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVEV 168 (344)
Q Consensus 91 lk~~~rGlVsma~~g-~~~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL~kI~~v~td~~~rP~~~~i~I~~~~V 168 (344)
..++++|+|+|++.+ .+++++|||||+|+++++||++|+|||+|+. |+++|++|+.++++. +|.++ ++|.+|+|
T Consensus 81 ~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~-G~~vl~~i~~~~~~~--~p~~~-v~I~~cgv 155 (155)
T PF00160_consen 81 LLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIE-GMDVLDKIEAGPTDE--RPKQD-VTISSCGV 155 (155)
T ss_dssp SSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEE-HHHHHHHHHTSBBTT--EBSST-EEEEEEEE
T ss_pred cccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEeh-hHHHHHHHHCCCCCC--ccCCC-eEEEEeEC
Confidence 444599999999875 4788999999999999999999999999995 899999999999987 99999 99999987
No 26
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=6.8e-36 Score=268.85 Aligned_cols=140 Identities=37% Similarity=0.545 Sum_probs=119.0
Q ss_pred EecceeEEEEEcCCCChHHHHHHHHHHhcCCccCceeEEeecCcEEEccCCCCCCCC---------------------CC
Q 042423 18 KTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGDPTGTGTG---------------------GE 76 (344)
Q Consensus 18 ~Ts~G~I~IEL~~d~aP~tv~NFl~Lc~~g~Ydgt~FhRVip~fiIQgGDp~g~G~g---------------------g~ 76 (344)
.|+.|+|+|+||++.||+||.||+.||+.+||+++.||||+++||||||||.+++.+ +.
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~ 82 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQ 82 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCCC
Confidence 589999999999999999999999999999999999999999999999999866433 34
Q ss_pred cccCCCCC----CCcCCCcccccCceeEEecCCC-CCCCCceEEEecC-------CCCCCCCCCeEEEEEEcCceeeeee
Q 042423 77 SIYGGNFA----DEFHSRLRFNHRGLVACANAGS-PHSNGSQFFISLD-------RCDWLDRKNTIFGKVTGDSIFNLLR 144 (344)
Q Consensus 77 siyg~~f~----dE~~~rlk~~~rGlVsma~~g~-~~sngSQFFITL~-------~~p~LDgk~tVFGrVvg~gi~vL~k 144 (344)
++|+.++. ++..+.+.|+++|+||||+.+. +++++|||||+++ ++|+||++|||||+|++ |+++|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~Vve-G~dvl~~ 161 (176)
T cd01924 83 PVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTD-GLDILRE 161 (176)
T ss_pred CccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEec-CHHHHHh
Confidence 56665543 3333456788999999999886 4999999999998 89999999999999995 8999999
Q ss_pred cccccCCCCCCCCCCCcEEEEEEEec
Q 042423 145 LGEVDTDKNDRPLDPPPKLLSVEVLW 170 (344)
Q Consensus 145 I~~v~td~~~rP~~~~i~I~~~~Vl~ 170 (344)
|... + +|.+++|+.
T Consensus 162 I~~g----------d--~i~~~~~~~ 175 (176)
T cd01924 162 LKVG----------D--KIESARVVE 175 (176)
T ss_pred hcCC----------C--EEEEEEEec
Confidence 9543 3 477777764
No 27
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-35 Score=269.28 Aligned_cols=146 Identities=38% Similarity=0.696 Sum_probs=135.9
Q ss_pred ecceeEEEEEcCCCChHHHHHHHHHHhc--CC-ccCceeEEeecCcEEEccCCC-CCCCCCCcccCCCCCCCcCCCcccc
Q 042423 19 TTHGPIDIELWPKEAPKAVRNFVQLCLE--GY-FDNTIFHRIIKGFLVQGGDPT-GTGTGGESIYGGNFADEFHSRLRFN 94 (344)
Q Consensus 19 Ts~G~I~IEL~~d~aP~tv~NFl~Lc~~--g~-Ydgt~FhRVip~fiIQgGDp~-g~G~gg~siyg~~f~dE~~~rlk~~ 94 (344)
-..|+|++.|..+..|+|++||.+||.+ || |.|++||||+|.||+||||.+ ++|+||.||||..|.||++ .|+|+
T Consensus 148 ~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiygkkfddenf-~lkht 226 (298)
T KOG0111|consen 148 DRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGKKFDDENF-TLKHT 226 (298)
T ss_pred cccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCcccccccccccce-eeecC
Confidence 3479999999999999999999999984 66 999999999999999999999 7999999999999999998 69999
Q ss_pred cCceeEEecCCCCCCCCceEEEecCCCCCCCCCCeEEEEEEcCceeeeeecccccCCCCCCCCCCCcEEEEEEEe
Q 042423 95 HRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVEVL 169 (344)
Q Consensus 95 ~rGlVsma~~g~~~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL~kI~~v~td~~~rP~~~~i~I~~~~Vl 169 (344)
..|+|+|||+| +|+||||||||+....||||+|+|||.|+. |+.++.+++.... .+|+|.+. ++|..|+-+
T Consensus 227 ~pgtlsmansg-antngsqffict~ktdwldgkhvvfghv~e-g~~vvrq~e~qgs-ksgkp~qk-v~i~~cge~ 297 (298)
T KOG0111|consen 227 MPGTLSMANSG-ANTNGSQFFICTEKTDWLDGKHVVFGHVVE-GMNVVRQVEQQGS-KSGKPQQK-VKIVECGEI 297 (298)
T ss_pred CCceeeccccC-CCCCCceEEEEecccccccCceeEEeeecc-hHHHHHHHHhccC-CCCCcceE-EEEEecccc
Confidence 99999999999 999999999999999999999999999996 8999998877654 56999999 999999754
No 28
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.7e-28 Score=216.21 Aligned_cols=146 Identities=38% Similarity=0.690 Sum_probs=131.5
Q ss_pred ecceeEEEEEcCCCChHHHHHHHHHHhcC--C-ccCceeEEe---ecCcEEEccCCC-CCCCCCCcccCCCCCCCcCCCc
Q 042423 19 TTHGPIDIELWPKEAPKAVRNFVQLCLEG--Y-FDNTIFHRI---IKGFLVQGGDPT-GTGTGGESIYGGNFADEFHSRL 91 (344)
Q Consensus 19 Ts~G~I~IEL~~d~aP~tv~NFl~Lc~~g--~-Ydgt~FhRV---ip~fiIQgGDp~-g~G~gg~siyg~~f~dE~~~rl 91 (344)
.++|++.++||++..|+|++||..||.+. + |.+..|||+ +++|++||||.+ .+|+||.|+|++.|+||++ .|
T Consensus 15 ~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSiy~ekF~DenF-il 93 (167)
T KOG0865|consen 15 EPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSIYGEKFDDENF-IL 93 (167)
T ss_pred ccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEecccccCCcCc-EE
Confidence 57899999999999999999999999842 2 999999993 447999999998 7899999999999999998 68
Q ss_pred ccccCceeEEecCCCCCCCCceEEEecCCCCCCCCCCeEEEEEEcCceeeeeecccccCCCCCCCCCCCcEEEEEEEe
Q 042423 92 RFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVEVL 169 (344)
Q Consensus 92 k~~~rGlVsma~~g~~~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL~kI~~v~td~~~rP~~~~i~I~~~~Vl 169 (344)
+|..+|+|+|||.| ||+||||||||+....|||++|+|||+|.. |+.++.+++. -...+++|..+ +.|.+|+.|
T Consensus 94 khtgpGiLSmaNag-pntngsqffictaktewLdgkhVVfGkv~e-Gm~iv~a~e~-~gs~~gk~~~~-i~i~dcg~l 167 (167)
T KOG0865|consen 94 KHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFGKVKE-GMDIVEAMER-FGSRNGKTSKK-ITIADCGQL 167 (167)
T ss_pred ecCCCCeeehhhcC-CCccccEEEEEccccccccCceeEcCceEc-ccchhhhhhc-cCCcCCccccc-EEEecCCcC
Confidence 99999999999999 999999999999999999999999999995 8888888877 33467899999 999999754
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.00073 Score=69.00 Aligned_cols=152 Identities=23% Similarity=0.290 Sum_probs=114.6
Q ss_pred cEEEEEecce----eEEEEEcCCCChHHHHHHHHHHhcCCccCceeEEeecCcEEEccCCCCC-CCCCCccc--CC---C
Q 042423 13 GKVIVKTTHG----PIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGDPTGT-GTGGESIY--GG---N 82 (344)
Q Consensus 13 ~kV~l~Ts~G----~I~IEL~~d~aP~tv~NFl~Lc~~g~Ydgt~FhRVip~fiIQgGDp~g~-G~gg~siy--g~---~ 82 (344)
+.+.+.|+.| -|.|+|+..-.|.-+.-|..+|..+|+++..|.+|...+++|.||..-. ..+|.--| +. .
T Consensus 99 g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~q 178 (558)
T KOG0882|consen 99 GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQ 178 (558)
T ss_pred CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCccc
Confidence 4578889999 8999999999999999999999999999999999999999999986522 11221111 11 1
Q ss_pred CC-CCcCCCcccccCceeEEecCCCCCCCCceEEEecCCCCCCCCCCeEEEEEEcCceeeeeecccccCCCCCCCCCCCc
Q 042423 83 FA-DEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPP 161 (344)
Q Consensus 83 f~-dE~~~rlk~~~rGlVsma~~g~~~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL~kI~~v~td~~~rP~~~~i 161 (344)
|+ .+.+-.++| ..-++.+...- ..-.+-+|+++-...+-+..+..|||++.. +-.+++.|.++.++....|..+ +
T Consensus 179 fPr~~l~~~~K~-eTdLy~f~K~K-t~pts~Efsp~g~qistl~~DrkVR~F~~K-tGklvqeiDE~~t~~~~q~ks~-y 254 (558)
T KOG0882|consen 179 FPRTNLNFELKH-ETDLYGFPKAK-TEPTSFEFSPDGAQISTLNPDRKVRGFVFK-TGKLVQEIDEVLTDAQYQPKSP-Y 254 (558)
T ss_pred Cccccccccccc-cchhhcccccc-cCccceEEccccCcccccCcccEEEEEEec-cchhhhhhhccchhhhhccccc-c
Confidence 22 223334444 45566665443 223345788888888888899999999994 5566888999999999999998 8
Q ss_pred EEEEEEE
Q 042423 162 KLLSVEV 168 (344)
Q Consensus 162 ~I~~~~V 168 (344)
.|.+++.
T Consensus 255 ~l~~Vel 261 (558)
T KOG0882|consen 255 GLMHVEL 261 (558)
T ss_pred ccceeeh
Confidence 9999865
No 30
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=91.45 E-value=1.3 Score=46.30 Aligned_cols=97 Identities=26% Similarity=0.385 Sum_probs=60.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhcCCccCceeEEeecCcEEEccCCCCCCCCCCcccCCCCCCCcCCCcccccCceeEEe
Q 042423 23 PIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGDPTGTGTGGESIYGGNFADEFHSRLRFNHRGLVACA 102 (344)
Q Consensus 23 ~I~IEL~~d~aP~tv~NFl~Lc~~g~Ydgt~FhRVip~fiIQgGDp~g~G~gg~siyg~~f~dE~~~rlk~~~rGlVsma 102 (344)
.+.+||.+ .||.+++.|+.+.+.|++. +.+....|+- ..+..|...+.|+. .--.||+|.+-
T Consensus 202 y~evE~~~-~~p~s~EH~la~~~~G~~~---Vd~~tsTfi~-----------d~~L~g~~~p~En~---~~R~rGtVTVR 263 (503)
T TIGR03268 202 YVEVELDP-NAPVSVEHFLALMEDGTFR---VDYRTSTFIS-----------DDSLRGLDKPEENI---EKRRRGAVTVR 263 (503)
T ss_pred EEEEEEcC-CCChhHHHHHHHHhCCeEE---EeeeecceEe-----------cccccCccCCcccc---CcccceeEEEE
Confidence 46778764 7999999999999998632 1111111111 11222455666654 22369999999
Q ss_pred cCCCCCCCCceEEEecCCCCCCCCCCeEEEEEEcCceeee
Q 042423 103 NAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNL 142 (344)
Q Consensus 103 ~~g~~~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL 142 (344)
+.| .+ .| ..||--.+.+. .-.|+|+|+|+. |++.+
T Consensus 264 n~G-~G-~G-~VYIYredr~s-s~sHtvVG~V~~-GiELi 298 (503)
T TIGR03268 264 NSG-VG-EG-RVYIYREDRPS-SLSHNVVGHVTR-GIELI 298 (503)
T ss_pred eec-cC-ce-eEEEEcCCCCC-CcccceeEEEec-ceeee
Confidence 887 22 22 57776654332 335999999995 67654
No 31
>PRK00969 hypothetical protein; Provisional
Probab=90.89 E-value=1.4 Score=46.11 Aligned_cols=115 Identities=22% Similarity=0.179 Sum_probs=64.6
Q ss_pred CcEEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCCccCceeEEeecCcEEEccCCCCCCCCCCcccCCCCCCCcCCCc
Q 042423 12 KGKVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGDPTGTGTGGESIYGGNFADEFHSRL 91 (344)
Q Consensus 12 ~~kV~l~Ts~G~I~IEL~~d~aP~tv~NFl~Lc~~g~Ydgt~FhRVip~fiIQgGDp~g~G~gg~siyg~~f~dE~~~rl 91 (344)
+.+..+.|+.|.|+|+|. ....++.-|+..+.. |-|...|=--++ -+-+|.... .+... ..-
T Consensus 50 ~~~y~IkTtkG~i~Iel~--~~~~~~~~w~e~yk~--~e~~~i~W~s~~-~vAfGp~~s-----------~l~p~--~~~ 111 (508)
T PRK00969 50 TKKYRIKTTKGEIVIELT--EENESVDFWLENYKE--FEGKSLRWTSRS-AVAFGPFES-----------DLEPS--REE 111 (508)
T ss_pred cceEEEEccCceEEEEEc--cCcchhhHHHHhHHh--hcCCceEecccc-ceeEccccc-----------Ccccc--cCc
Confidence 346789999999999999 555566666665543 455555433332 233332210 11111 111
Q ss_pred ccccCceeEEecCCCCCCCCceEEEecCCCCCCCC--CCeEEEEEEcCceeeeeecc
Q 042423 92 RFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDR--KNTIFGKVTGDSIFNLLRLG 146 (344)
Q Consensus 92 k~~~rGlVsma~~g~~~sngSQFFITL~~~p~LDg--k~tVFGrVvg~gi~vL~kI~ 146 (344)
....++-|.+.-+| -+...+.+.|+..+....=| .--+||+|++ |-.+|.++.
T Consensus 112 ~~y~r~DV~lg~~G-~dp~~thLIfsk~~h~a~YG~p~~gv~grVi~-Gk~vl~~L~ 166 (508)
T PRK00969 112 YEYERWDVVLSLSG-FDPSETHLIFSKRDHSADYGAPNDGVIGRVVG-GKRVLDRLT 166 (508)
T ss_pred ceeecccEEEEccC-CCCCCceEEEEecchhhhhCCCCCCceEEEcc-chhhHhhcc
Confidence 22468889888887 44445566666544321111 1179999996 555555543
No 32
>PRK00969 hypothetical protein; Provisional
Probab=90.72 E-value=1.7 Score=45.64 Aligned_cols=97 Identities=26% Similarity=0.383 Sum_probs=60.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhcCCccCceeEEeecCcEEEccCCCCCCCCCCcccCCCCCCCcCCCcccccCceeEEe
Q 042423 23 PIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGDPTGTGTGGESIYGGNFADEFHSRLRFNHRGLVACA 102 (344)
Q Consensus 23 ~I~IEL~~d~aP~tv~NFl~Lc~~g~Ydgt~FhRVip~fiIQgGDp~g~G~gg~siyg~~f~dE~~~rlk~~~rGlVsma 102 (344)
.+.++|.+ .||.+++.|+.+.+.|.+. +-+....|+- ..+..|...+.|+.. --.+|+|.+-
T Consensus 205 y~eve~~~-~~p~s~EH~la~~~~G~f~---Vd~~tstfI~-----------d~~L~g~~~p~En~~---~R~~GtVTVR 266 (508)
T PRK00969 205 YVEVELDP-GAPKSVEHFLALLEDGTFE---VDFETSTFIA-----------DDRLQGLKIPEENFE---PRRRGTVTVR 266 (508)
T ss_pred EEEEEEcC-CCCchHHHHHHHHhCCeEE---EeeeecceEe-----------eccccCccCCccccC---ccccceEEEE
Confidence 36778864 6999999999999998632 1111111111 111224556666542 2369999999
Q ss_pred cCCCCCCCCceEEEecCCCCCCCCCCeEEEEEEcCceeee
Q 042423 103 NAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNL 142 (344)
Q Consensus 103 ~~g~~~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL 142 (344)
+.| .+ . -.-||--.+.+. .-.|+|+|+|+. |++.+
T Consensus 267 t~G-~g-~-G~vYIyredr~s-s~sHtvVG~V~~-GiELi 301 (508)
T PRK00969 267 TAG-VG-V-GKVYIYREDRPS-SLSHTVVGRVTH-GIELI 301 (508)
T ss_pred eec-cC-c-eeEEEECCCCCC-CccceeEEEEec-ceeee
Confidence 887 22 2 257777654332 335999999995 77654
No 33
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=89.91 E-value=2.2 Score=44.70 Aligned_cols=115 Identities=20% Similarity=0.174 Sum_probs=65.1
Q ss_pred CcEEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCCccCceeEEeecCcEEEccCCCCCCCCCCcccCCCCCCCcCCCc
Q 042423 12 KGKVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGDPTGTGTGGESIYGGNFADEFHSRL 91 (344)
Q Consensus 12 ~~kV~l~Ts~G~I~IEL~~d~aP~tv~NFl~Lc~~g~Ydgt~FhRVip~fiIQgGDp~g~G~gg~siyg~~f~dE~~~rl 91 (344)
+.+..+.|+.|.|+|+|- ....++.-|+..+.. |-|...|=.-+. -+-+|.... .+ +....-
T Consensus 46 ~~~y~IkTtkG~i~iel~--~~~~~~~~w~e~y~~--~e~~~i~W~s~~-~vAfGp~~s-----------dl--~p~~~~ 107 (503)
T TIGR03268 46 TKEYLIKTTKGEVVIELT--PNTEAGKFWSEIYKE--LEGKQIRWTTPQ-EVAFGPFPS-----------DL--EPSREP 107 (503)
T ss_pred cceEEEEccCceEEEEec--CCchHHHHHHHHHHh--hcCCceeecchh-heeeCcccC-----------Cc--cccCCc
Confidence 346789999999999998 356677777765543 445444433222 222232110 01 111111
Q ss_pred ccccCceeEEecCCCCCCCCceEEEecCCCC-CC--CCCCeEEEEEEcCceeeeeecc
Q 042423 92 RFNHRGLVACANAGSPHSNGSQFFISLDRCD-WL--DRKNTIFGKVTGDSIFNLLRLG 146 (344)
Q Consensus 92 k~~~rGlVsma~~g~~~sngSQFFITL~~~p-~L--Dgk~tVFGrVvg~gi~vL~kI~ 146 (344)
....||-|.+.-+| -+...+.+.|+..+.. .+ ....-+||+|++ |-.+|.++.
T Consensus 108 ~~y~r~DV~lg~~G-~d~~~thLIfsk~~h~~~YG~p~~~gvigrvi~-Gk~vl~~L~ 163 (503)
T TIGR03268 108 SEYERWDVILSLSG-FDPDETHIIFSKKRHAAEYGVPDENGIIARVVG-GKRVIDRLS 163 (503)
T ss_pred ceeecccEEEEccC-CCCCCceEEEEecchhhhhCCCCCCCEEEEEcc-chhhHhhcc
Confidence 22468999898888 4555556666665433 11 224579999996 555555553
No 34
>PF04921 XAP5: XAP5, circadian clock regulator; InterPro: IPR007005 These proteins are found in a wide range of eukaryotes. Their function is uncertain though they are nuclear proteins, possibly with DNA-binding activity.; GO: 0005634 nucleus
Probab=88.49 E-value=0.39 Score=45.90 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCccccc-cCCceEE
Q 042423 291 EASFDAKMRQKILRRRKDLGDVPPKQKM-HNGTLII 325 (344)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 325 (344)
=..|-+++|+++.+.++||.-+....-+ -++..||
T Consensus 123 I~~FL~~~r~~l~~~f~el~~vsvd~LM~VkedlIi 158 (239)
T PF04921_consen 123 IWQFLEKCRKQLAKEFRELRRVSVDDLMYVKEDLII 158 (239)
T ss_pred HHHHHHHHHHHHHHHhHHHHhcCHhheeeeccceec
Confidence 6789999999999999999887666555 3344444
No 35
>PF15377 DUF4604: Domain of unknown function (DUF4604)
Probab=84.45 E-value=0.41 Score=42.60 Aligned_cols=20 Identities=45% Similarity=0.529 Sum_probs=16.1
Q ss_pred hhhhhhhccCccceeccccc
Q 042423 195 KDIKKKAVKKLNLLSFGEEA 214 (344)
Q Consensus 195 ~~~~kk~~k~~~llsf~~e~ 214 (344)
++++++++|++.|||||||+
T Consensus 139 ~k~kkk~kk~k~lLSF~dde 158 (158)
T PF15377_consen 139 KKKKKKKKKIKSLLSFDDDE 158 (158)
T ss_pred cccccccccccCCCCCCCCC
Confidence 56667778889999999874
No 36
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=83.43 E-value=3.2 Score=42.51 Aligned_cols=129 Identities=20% Similarity=0.232 Sum_probs=65.9
Q ss_pred CCCCCCC------cEEEEEe--cceeEEEEEcCCCChHHHHHHHHHHhcC--CccCceeEEeecCc--EEEccCCCCCCC
Q 042423 6 VLEPPTK------GKVIVKT--THGPIDIELWPKEAPKAVRNFVQLCLEG--YFDNTIFHRIIKGF--LVQGGDPTGTGT 73 (344)
Q Consensus 6 ~~ePpt~------~kV~l~T--s~G~I~IEL~~d~aP~tv~NFl~Lc~~g--~Ydgt~FhRVip~f--iIQgGDp~g~G~ 73 (344)
.++||.+ ++|...- .---|.||||.+.||.++..|..+..-. ---....|-..++. ++.-|++
T Consensus 352 ~QeP~~TldvLkE~KVr~~gv~~dkiieIELyed~APrSv~yFRr~t~l~~kpVGkL~Vhfay~d~~~vmfegn~----- 426 (512)
T COG4070 352 KQEPPYTLDVLKEAKVRAYGVPRDKIIEIELYEDRAPRSVWYFRRSTGLKTKPVGKLKVHFAYDDTYLVMFEGNA----- 426 (512)
T ss_pred ecCCchHHhhhhhceeEEEecChhhEEEEEecCCCCchhhHHHHhhcccccccccceEEEEEeCCceEEEEcCCh-----
Confidence 3566655 4554331 2235999999999999999999886421 12224566666662 2223333
Q ss_pred CCCcccCCCCCCCcCCCcccccCceeEEecCCCCCCCCceEEEecCCCCCC------CCCCeEEEEEEcCceeeeeeccc
Q 042423 74 GGESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWL------DRKNTIFGKVTGDSIFNLLRLGE 147 (344)
Q Consensus 74 gg~siyg~~f~dE~~~rlk~~~rGlVsma~~g~~~sngSQFFITL~~~p~L------Dgk~tVFGrVvg~gi~vL~kI~~ 147 (344)
.++..+..|+.|.- ....|.++.-|...++ .| ..-+-|.+...+ =.+-.++|+|++ |...|..|..
T Consensus 427 ----~~~K~llPEN~P~d-~Ve~g~iGvTN~a~r~-~G-mIGVRL~dsdefGPTGE~Fe~TNiIGrIve-g~e~l~~ike 498 (512)
T COG4070 427 ----VLAKGLLPENTPAD-TVEAGEIGVTNQAARH-MG-MIGVRLEDSDEFGPTGEKFEGTNIIGRIVE-GPERLIGIKE 498 (512)
T ss_pred ----HHhccCCCCCCchh-heecccccccccchhc-cc-eeEEEeccccccCCCCCccccceeehhhcc-ChHHhccccc
Confidence 22333444544321 1234444443322111 01 111222222211 123468999996 7777766654
No 37
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=81.86 E-value=6.3 Score=40.46 Aligned_cols=120 Identities=19% Similarity=0.300 Sum_probs=70.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhcCC----ccCceeEEeecCcEEEccCCCCCCCCCCcccCCCCCCCcCCCcccccCce
Q 042423 23 PIDIELWPKEAPKAVRNFVQLCLEGY----FDNTIFHRIIKGFLVQGGDPTGTGTGGESIYGGNFADEFHSRLRFNHRGL 98 (344)
Q Consensus 23 ~I~IEL~~d~aP~tv~NFl~Lc~~g~----Ydgt~FhRVip~fiIQgGDp~g~G~gg~siyg~~f~dE~~~rlk~~~rGl 98 (344)
.+.++|-+ .+|++++.|++|...|. |.-..|- +-.+..+.+.+.|+. .+ ..||.
T Consensus 204 y~eve~s~-nsP~saEH~lalmedG~lri~~~tntfi------------------s~~~lq~~~~~~en~-d~--RerG~ 261 (512)
T COG4070 204 YFEVELSR-NSPKSAEHFLALMEDGTLRIDVTTNTFI------------------SDDTLQEEKVPEENF-DL--RERGA 261 (512)
T ss_pred EEEEEeCC-CCchhHHHHHHHhhcceEEEEEecccee------------------eccccccccCChhhh-hh--hhcce
Confidence 46788864 69999999999999875 2222221 111223455666655 23 36999
Q ss_pred eEEecCCCCCCCCceEEEecCCCCCCCCCCeEEEEEEcCceeeeeecccccCCCCCCCCCCCcEEEEEEEecCC
Q 042423 99 VACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVEVLWNP 172 (344)
Q Consensus 99 Vsma~~g~~~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL~kI~~v~td~~~rP~~~~i~I~~~~Vl~~P 172 (344)
+..-|.| -+ .-.-||.-.+-+. --.|+|+|+|.. ||+.++--++...- -.-..| .+|.-+++....
T Consensus 262 iTvRn~G-vg--eGrvYIyRedR~s-s~sHnvVGrV~e-GiELid~a~eGd~l--sVe~~P-~ri~~vglT~eE 327 (512)
T COG4070 262 ITVRNVG-VG--EGRVYIYREDRPS-SLSHNVVGRVIE-GIELIDLAEEGDKL--SVESLP-PRIVLVGLTFEE 327 (512)
T ss_pred EEEEeee-cc--cceEEEEecCCCC-ccccceeeeeec-ceEEEEecccCcEE--EEeecC-ceeEEeeccHHH
Confidence 9998876 22 2356776543222 235899999995 77766533222100 011234 688887776443
No 38
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=52.49 E-value=1.3e+02 Score=25.47 Aligned_cols=98 Identities=16% Similarity=0.138 Sum_probs=52.2
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHHHh----cCCccCceeEEeecCcEEEccCCCCCCCCCCcccCCCCC-CCcC
Q 042423 14 KVIVKTTHGPIDIELWPKEAPKAVRNFVQLCL----EGYFDNTIFHRIIKGFLVQGGDPTGTGTGGESIYGGNFA-DEFH 88 (344)
Q Consensus 14 kV~l~Ts~G~I~IEL~~d~aP~tv~NFl~Lc~----~g~Ydgt~FhRVip~fiIQgGDp~g~G~gg~siyg~~f~-dE~~ 88 (344)
++.|+.....+.++|+.. .|++.|++..= -..|.+ .+|--.|- .++ ++.
T Consensus 2 kI~i~i~~~~~~a~L~d~---~ta~~~~~~LPlt~~~~~~g~-E~y~~~p~---------------------~l~~~~~- 55 (120)
T PF04126_consen 2 KIKITIGGQEIEAELNDS---PTARAFAAQLPLTVTMNDWGN-EKYFSLPL---------------------KLPTEEN- 55 (120)
T ss_dssp EEEEEETTEEEEEEEETT---HHHHHHHHC-SEEEEEEECTT-EEEEE-S--------------------------SSS-
T ss_pred eEEEEECCEEEEEEECCC---HHHHHHHHhCCeEEEHHHCCc-eEEEeCCC---------------------CCCcccC-
Confidence 467777788899999976 78898888761 112322 22111110 111 111
Q ss_pred CCcccccCceeEEecCCCCCCCCceEEEecCCCC-------CCCCCCeEEEEEEcCceeeeeec
Q 042423 89 SRLRFNHRGLVACANAGSPHSNGSQFFISLDRCD-------WLDRKNTIFGKVTGDSIFNLLRL 145 (344)
Q Consensus 89 ~rlk~~~rGlVsma~~g~~~sngSQFFITL~~~p-------~LDgk~tVFGrVvg~gi~vL~kI 145 (344)
++ .-...|-|++-..+ .-|-|-+++.| .+-....++|||++ +...+..+
T Consensus 56 ~~-~~~~~GDi~Yw~pg------~~l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~-~~~~l~~~ 111 (120)
T PF04126_consen 56 PR-SSVEAGDIAYWPPG------GALAIFYGDTPISEGGEIRPASPVNVLGRIVS-DLENLKEV 111 (120)
T ss_dssp EE-SSB-TTEEEEECCC------TEEEEESS--TT--TTSB--SSSEEEEEEEEC--GGGGGG-
T ss_pred cc-ccccCceEEEeCCC------CEEEEEecCcccccccccccCCcceEEEEECC-CHHHHhhC
Confidence 11 11357888876444 34667677664 45567899999996 56555544
No 39
>KOG2894 consensus Uncharacterized conserved protein XAP-5 [Function unknown]
Probab=51.75 E-value=5 Score=39.30 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=17.2
Q ss_pred hhhhhhccCccceeccccchhhhHhH
Q 042423 196 DIKKKAVKKLNLLSFGEEAEEEEKEL 221 (344)
Q Consensus 196 ~~~kk~~k~~~llsf~~e~~~~e~~~ 221 (344)
+.++.++++...|||+.++|+|+++.
T Consensus 107 e~K~~kkr~~s~LSFa~DdEededD~ 132 (331)
T KOG2894|consen 107 EEKKEKKRQISRLSFALDDEEDEDDA 132 (331)
T ss_pred HHHHHHhhcccccccccccccccccc
Confidence 44445566778899997766655543
No 40
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=47.72 E-value=36 Score=30.38 Aligned_cols=108 Identities=18% Similarity=0.211 Sum_probs=50.4
Q ss_pred cceeEEEEEcCCCChHHHHHHHHHHhcCCccCceeEEeecCc--EEEccCCCCCCCCCCcccCCCCCCCcCCCcccccCc
Q 042423 20 THGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGF--LVQGGDPTGTGTGGESIYGGNFADEFHSRLRFNHRG 97 (344)
Q Consensus 20 s~G~I~IEL~~d~aP~tv~NFl~Lc~~g~Ydgt~FhRVip~f--iIQgGDp~g~G~gg~siyg~~f~dE~~~rlk~~~rG 97 (344)
.--.++.+|+.+.||+||+.|.++. =|.+..+|-...+. ++.-|+... ...+-|+++. +..+|
T Consensus 6 ~g~~~~A~l~~d~AP~Tcaa~~~~L---P~~~~~~HarwSG~ei~~~l~~~~~----------~~~~~EN~T~--~P~pG 70 (147)
T PF12903_consen 6 RGVSFTARLLDDKAPKTCAAFWEAL---PLKGKVIHARWSGEEIWIPLPDFDP----------FEPGRENHTV--TPIPG 70 (147)
T ss_dssp TTEEEEEEE-TTTSHHHHHHHHHH-----EEEE-EE-SSSSSEEEEEEE--SS----------S---S-SEES--S--TT
T ss_pred CCeEEEEEEcccCChHHHHHHHHhC---CCCCcEEEEEEECcEEEEECCCcCc----------CCCCCCcCcc--cCCCC
Confidence 3446889999999999999999986 34555555544442 333343221 1234455532 33567
Q ss_pred eeEEec--C----CCCC-CCCceEEEecC------CCCCCCCCCeEEEEEEcCceeeeeec
Q 042423 98 LVACAN--A----GSPH-SNGSQFFISLD------RCDWLDRKNTIFGKVTGDSIFNLLRL 145 (344)
Q Consensus 98 lVsma~--~----g~~~-sngSQFFITL~------~~p~LDgk~tVFGrVvg~gi~vL~kI 145 (344)
-|.+.- . +.|. -+...+|+-.+ +..++- -.+|++|+. +.+.|.++
T Consensus 71 di~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~--GN~FatI~e-gle~la~~ 128 (147)
T PF12903_consen 71 DILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLP--GNHFATITE-GLEELAEA 128 (147)
T ss_dssp EEEEE-----------E-EEEEEEE-SSS---EETTTEE----EEEEEEEEE-SHHHHHHH
T ss_pred cEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccc--eeEEEEEcC-CHHHHHHH
Confidence 776651 0 0011 11223333222 222333 378999995 66655443
No 41
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=26.84 E-value=43 Score=35.77 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=14.6
Q ss_pred hccccccccccCCCCcccccc
Q 042423 224 VKQKIRSSHDVLDDPRLLKED 244 (344)
Q Consensus 224 ~~~k~ks~hd~l~d~~l~~~~ 244 (344)
...+.+++.|++.-|+.++..
T Consensus 76 ~~~~~nv~rd~m~~~~~~ss~ 96 (641)
T KOG0772|consen 76 PNRNPNVSRDVMGPPRVSSSI 96 (641)
T ss_pred ccccccccccccCCCCCcccc
Confidence 345778899997766665554
No 42
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=25.05 E-value=48 Score=33.49 Aligned_cols=50 Identities=16% Similarity=0.170 Sum_probs=33.1
Q ss_pred cCceeEEecCCCCCCCCceEEEecCCCCCCCCCCeEEEEEEcCceeeeeecc
Q 042423 95 HRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLG 146 (344)
Q Consensus 95 ~rGlVsma~~g~~~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL~kI~ 146 (344)
.+|.|.+.|.. ......+.-|++.+.|. |++..|+|+|..+.+..|+-|.
T Consensus 299 ~~G~ItIdN~~-ygRY~GElQI~~~dlp~-d~rvNViG~V~~~d~~LLd~I~ 348 (357)
T PF05913_consen 299 KRGDITIDNEN-YGRYKGELQIVKKDLPA-DERVNVIGRVDEEDLPLLDYIK 348 (357)
T ss_dssp -TTEEEEE-GG-GGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--
T ss_pred cCceEEEeCCC-ccccccEEEEEcccCCC-CCCeeEEEEECHHHHHHHHhcC
Confidence 68999999876 55566689999999886 8999999999976676666664
No 43
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=24.16 E-value=12 Score=40.21 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=16.1
Q ss_pred ccccccccccCCCCcccccc
Q 042423 225 KQKIRSSHDVLDDPRLLKED 244 (344)
Q Consensus 225 ~~k~ks~hd~l~d~~l~~~~ 244 (344)
+.+.+++..||.|.|+..-.
T Consensus 470 kk~~k~~~siLtDdRFk~mF 489 (703)
T KOG2321|consen 470 KKKVKKAPSILTDDRFKSMF 489 (703)
T ss_pred hhccccCCcccchhHHHHhc
Confidence 66679999999999886654
Done!