BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042424
(138 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mtr4 PE=1 SV=1
Length = 1117
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 57/72 (79%), Positives = 64/72 (88%)
Query: 67 GKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLSPNASCL 126
GKT VAEYA+A + RDKQRVIYTS +KALSNQKYREL EF DVGLMTGDVT++P+A+CL
Sbjct: 225 GKTVVAEYAVAQSLRDKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDVTINPDATCL 284
Query: 127 VMTTEILRGMLY 138
VMTTEILR MLY
Sbjct: 285 VMTTEILRSMLY 296
>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens
GN=SKIV2L2 PE=1 SV=3
Length = 1042
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 56/72 (77%), Positives = 66/72 (91%)
Query: 67 GKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLSPNASCL 126
GKT AEYAIA+A R+KQRVI+TS +KALSNQKYRE+++EF+DVGLMTGDVT++P ASCL
Sbjct: 166 GKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCL 225
Query: 127 VMTTEILRGMLY 138
VMTTEILR MLY
Sbjct: 226 VMTTEILRSMLY 237
>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus
GN=Skiv2l2 PE=2 SV=1
Length = 1040
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 56/72 (77%), Positives = 66/72 (91%)
Query: 67 GKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLSPNASCL 126
GKT AEYAIA+A R+KQRVI+TS +KALSNQKYRE+++EF+DVGLMTGDVT++P ASCL
Sbjct: 164 GKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCL 223
Query: 127 VMTTEILRGMLY 138
VMTTEILR MLY
Sbjct: 224 VMTTEILRSMLY 235
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3
SV=1
Length = 1026
Score = 121 bits (304), Expect = 1e-27, Method: Composition-based stats.
Identities = 69/135 (51%), Positives = 76/135 (56%), Gaps = 28/135 (20%)
Query: 32 RNPTRSCVHEVAVPSCYTLTTDETTHGTLTNPVY-------------------------- 65
R +C HEVA+P GT Y
Sbjct: 89 RTDNENCTHEVAIPPNAEFAELRENSGTEPAKYYPFQLDAFQKQAILCIDNNQSVLVSAH 148
Query: 66 --NGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLSPNA 123
GKT VA YAIA R+KQRVIYTS +KALSNQKYREL +EFKDVGLMTGDVTL+P+A
Sbjct: 149 TSAGKTVVATYAIAKCLREKQRVIYTSPIKALSNQKYRELEEEFKDVGLMTGDVTLNPDA 208
Query: 124 SCLVMTTEILRGMLY 138
SCLVMTTEILR MLY
Sbjct: 209 SCLVMTTEILRSMLY 223
>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1
Length = 1073
Score = 115 bits (288), Expect = 7e-26, Method: Composition-based stats.
Identities = 55/72 (76%), Positives = 63/72 (87%)
Query: 67 GKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLSPNASCL 126
GKT VAEYAIA + ++KQRVIYTS +KALSNQKYREL EF DVGLMTGD+T++P+A CL
Sbjct: 176 GKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCL 235
Query: 127 VMTTEILRGMLY 138
VMTTEILR MLY
Sbjct: 236 VMTTEILRSMLY 247
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1
Length = 1030
Score = 114 bits (286), Expect = 1e-25, Method: Composition-based stats.
Identities = 53/72 (73%), Positives = 64/72 (88%)
Query: 67 GKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLSPNASCL 126
GKT +AEYAIA A +++QRVIYTS +K+LSNQKYREL EF DVGLMTGDV+++P+ASCL
Sbjct: 152 GKTVIAEYAIAQALKNRQRVIYTSPIKSLSNQKYRELLSEFGDVGLMTGDVSINPSASCL 211
Query: 127 VMTTEILRGMLY 138
+MTTEILR MLY
Sbjct: 212 IMTTEILRAMLY 223
>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3
Length = 1246
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 56/72 (77%)
Query: 67 GKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLSPNASCL 126
GKT VAEYAIA+A + R IYTS +KALSNQK+R+ F DVGL+TGDV L P ASCL
Sbjct: 337 GKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCL 396
Query: 127 VMTTEILRGMLY 138
+MTTEILR MLY
Sbjct: 397 IMTTEILRSMLY 408
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SKI2 PE=1 SV=2
Length = 1287
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 48/74 (64%), Positives = 60/74 (81%), Gaps = 2/74 (2%)
Query: 67 GKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFKDV--GLMTGDVTLSPNAS 124
GKT VAEYAIAMA R+ + IYTS +KALSNQK+R+ + F DV GL+TGDV ++P+A+
Sbjct: 356 GKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDAN 415
Query: 125 CLVMTTEILRGMLY 138
CL+MTTEILR MLY
Sbjct: 416 CLIMTTEILRSMLY 429
>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1
Length = 1213
Score = 97.8 bits (242), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/72 (62%), Positives = 58/72 (80%)
Query: 67 GKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLSPNASCL 126
GKT VAEYAIA+A + + IYTS +KALSNQK+R+ +F+DVG++TGDV ++P SCL
Sbjct: 307 GKTVVAEYAIALAQKHMTKAIYTSPIKALSNQKFRDFKHKFEDVGILTGDVQVNPEGSCL 366
Query: 127 VMTTEILRGMLY 138
+MTTEILR MLY
Sbjct: 367 LMTTEILRSMLY 378
>sp|B9DFG3|ISE2_ARATH DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic
OS=Arabidopsis thaliana GN=ISE2 PE=1 SV=2
Length = 1171
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 2/81 (2%)
Query: 60 LTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFKD--VGLMTGDV 117
++ P +GKT +AE A +R+ YT+ LKALSNQK+RE + F D VGL+TGD
Sbjct: 174 VSAPTSSGKTLIAEAAAVSTVAKGRRLFYTTPLKALSNQKFREFRETFGDDNVGLLTGDS 233
Query: 118 TLSPNASCLVMTTEILRGMLY 138
++ +A ++MTTEILR MLY
Sbjct: 234 AINKDAQIVIMTTEILRNMLY 254
>sp|Q10701|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tuberculosis GN=helY PE=3
SV=1
Length = 906
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/88 (45%), Positives = 56/88 (63%), Gaps = 3/88 (3%)
Query: 54 ETTHGTLT-NPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEF--KDV 110
E HG L P GKT V E+A+ +A + YT+ LKALSNQK+ +L + +
Sbjct: 30 ERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFYTTPLKALSNQKHTDLTARYGRDQI 89
Query: 111 GLMTGDVTLSPNASCLVMTTEILRGMLY 138
GL+TGD++++ NA +VMTTE+LR MLY
Sbjct: 90 GLLTGDLSVNGNAPVVVMTTEVLRNMLY 117
>sp|Q9ZBD8|HELY_MYCLE Probable helicase HelY OS=Mycobacterium leprae (strain TN) GN=helY
PE=3 SV=1
Length = 920
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 39/88 (44%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 54 ETTHGTLT-NPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEF--KDV 110
E HG L P GKT V E+A+ +A + YT+ LKALSNQKY +L + +
Sbjct: 30 ERGHGVLVCAPTGAGKTVVGEFAVHLALAAGGKCFYTTPLKALSNQKYTDLTARYGRNRI 89
Query: 111 GLMTGDVTLSPNASCLVMTTEILRGMLY 138
GL+TGD +++ ++ +VMTTE+LR MLY
Sbjct: 90 GLLTGDQSVNGDSPVVVMTTEVLRNMLY 117
>sp|A7IB61|HELS_METB6 Putative ski2-type helicase OS=Methanoregula boonei (strain 6A8)
GN=Mboo_2458 PE=3 SV=1
Length = 723
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 63 PVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLSPN 122
P +GKT +AE A+ + + +Y LKAL+++KY E + VGL TGD+ +
Sbjct: 47 PTASGKTLIAEMAMHRHIANGGKCLYIVPLKALASEKYEEFGNKGVKVGLSTGDLDRRDD 106
Query: 123 A----SCLVMTTEILRGML 137
A +V T+E + +L
Sbjct: 107 ALGKNDIIVATSEKVDSLL 125
>sp|Q97VY9|HELS_SULSO Putative ski2-type helicase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=SSO2462 PE=1 SV=1
Length = 708
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 60 LTNPVYNGKTAVAEYAI-AMAFRDKQRVIYTSSLKALSNQKYRELHKEFKDVGL 112
LT+P +GKT +AE I + ++ + IY + L+AL+N+KY K+++ +G
Sbjct: 44 LTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTF-KDWESIGF 96
>sp|Q974S1|HELS_SULTO Putative ski2-type helicase OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=STK_05900 PE=3
SV=1
Length = 704
Score = 37.0 bits (84), Expect = 0.035, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 60 LTNPVYNGKTAVAEYAIAMAFRDKQ-RVIYTSSLKALSNQKYRELHKEFKDVGLMTG 115
+T+P +GKT +AE + K + IY + L+AL+N+KY K+++ +G+ TG
Sbjct: 47 VTSPTASGKTLIAELGMINYLLSKGGKAIYITPLRALTNEKYNTF-KDWETLGIKTG 102
>sp|Q9V0A9|HELS_PYRAB Putative ski2-type helicase OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB08810 PE=3 SV=1
Length = 715
Score = 36.6 bits (83), Expect = 0.041, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 39 VHEVAVPSCYTLTTD--ETTHGTLTNPVYNGKTAVAEYAIAMAFRDKQ-RVIYTSSLKAL 95
+ E+ P LT+ E + + P +GKT +AE AIA ++ + +Y LKAL
Sbjct: 21 IEELYPPQAEALTSGVLEGENLLVAIPTASGKTLIAEIAIANKLLEEGGKAVYIVPLKAL 80
Query: 96 SNQKYRELHKEFKDVGL----MTGD 116
+ +K+RE K+++ +GL TGD
Sbjct: 81 AEEKFREF-KDWERLGLKVAMATGD 104
>sp|Q465R3|HELS_METBF Putative ski2-type helicase OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3508 PE=3 SV=1
Length = 729
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 63 PVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFKD----VGLMTGDVT 118
P +GKT +AE A+ + + +Y L+AL+++K+R +EF + VG+ TGD
Sbjct: 47 PTASGKTLLAELAMLKSILAGGKALYIVPLRALASEKFRRF-REFSELGIRVGISTGDYD 105
Query: 119 L 119
L
Sbjct: 106 L 106
>sp|Q97AI2|HELS_THEVO Putative ski2-type helicase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0828 PE=3 SV=1
Length = 674
Score = 35.8 bits (81), Expect = 0.079, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 63 PVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFKDVGL 112
P GKT +A AI F+ K + IY L++L+ +KY EL + +++G+
Sbjct: 45 PTAAGKTLIAYSAIYETFKKKLKSIYIVPLRSLAMEKYEELSR-LRELGM 93
>sp|Q54G57|HELC1_DICDI Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium
discoideum GN=ascc3 PE=3 SV=1
Length = 2195
Score = 35.4 bits (80), Expect = 0.092, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Query: 60 LTNPVYNGKTAVAEYAIAMAFRDK--QRVIYTSSLKALSNQKYRELHKEF-----KDVGL 112
L +P +GKT AE A+ FRD+ +V+Y + LKAL ++ + +F K +
Sbjct: 1347 LGSPTGSGKTICAELAMFKVFRDEPHMKVVYIAPLKALVRERMNDWKVKFQEKLGKKLVE 1406
Query: 113 MTGDVTLSPNASCL 126
+TGD T PN L
Sbjct: 1407 LTGDYT--PNMIAL 1418
>sp|Q4JC00|HELS_SULAC Putative ski2-type helicase OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=Saci_0263 PE=3 SV=1
Length = 705
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 21/109 (19%)
Query: 16 DSHVRGTPKEESTKKQRNPTRSCVHEVAVPSCYTLTTDETTHGTLTNPVYNGKTAVAEYA 75
DS V+ K KK P V + + E +T P +GKT +AE
Sbjct: 12 DSKVKDIIKSRGIKKLNPPQTEAVKKGLI---------EDKRLLITTPTASGKTLMAELG 62
Query: 76 IAMAFRDKQ-RVIYTSSLKALSNQKYRELHKEFKD-------VGLMTGD 116
+ +K + IY + L+AL+++KY FKD VG+ +GD
Sbjct: 63 MISHLLNKGGKAIYVTPLRALTSEKY----STFKDWEKLGFKVGVTSGD 107
>sp|Q8PZR7|HELS_METMA Putative ski2-type helicase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_0425 PE=3 SV=1
Length = 730
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 63 PVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGD 116
P +GKT +AE A+ + + + +Y L+AL+++K+R +EF VG+ TGD
Sbjct: 47 PTASGKTLLAELAMLKSVLNGGKALYIVPLRALASEKFRRF-QEFSVLGMRVGISTGD 103
>sp|A2PYH4|HFM1_HUMAN Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1
PE=2 SV=2
Length = 1435
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 63 PVYNGKTAVAEYAIAMAFRD------KQRVIYTSSLKALSNQKYRELHKEFKDVGL---- 112
P +GKT V E AI + +++Y + +KAL +Q++ + ++F +GL
Sbjct: 304 PTGSGKTVVFELAITRLLMEVPLPWLNIKIVYMAPIKALCSQRFDDWKEKFGPIGLNCKE 363
Query: 113 MTGDVTL 119
+TGD +
Sbjct: 364 LTGDTVM 370
>sp|P53327|SLH1_YEAST Antiviral helicase SLH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SLH1 PE=1 SV=2
Length = 1967
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 14/101 (13%)
Query: 48 YTL-TTDETTHGTLTNPVYNGKTAVAEYAIAMAFRD--KQRVIYTSSLKALSNQKYRELH 104
YTL T+E + +P +GKT VAE AI AF+ ++++Y + +KAL ++ +
Sbjct: 1149 YTLYNTNENAF--VGSPTGSGKTIVAELAIWHAFKTFPGKKIVYIAPMKALVRERVDDWR 1206
Query: 105 KEFKDVG-----LMTGDVTLSP----NASCLVMTTEILRGM 136
K+ V +TGD P +A+ ++ T E G+
Sbjct: 1207 KKITPVTGDKVVELTGDSLPDPKDVHDATIVITTPEKFDGI 1247
>sp|Q8TL39|HELS_METAC Putative ski2-type helicase OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3203 PE=3
SV=1
Length = 730
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 63 PVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTG 115
P +GKT +AE A+ + + +Y L+AL+++K+R ++F ++G+ G
Sbjct: 47 PTASGKTLLAELAMLKSVLAGGKALYIVPLRALASEKFRRF-QDFSELGIRVG 98
>sp|Q9P7T8|YIW2_SCHPO Uncharacterized helicase C694.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC694.02 PE=3 SV=1
Length = 1717
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 13/88 (14%)
Query: 63 PVYNGKTAVAEYAIAMAFRDKQR--VIYTSSLKALSNQ----KYRELHKEFKDVG----- 111
P +GKT ++ YA+ RD VIY + KAL NQ Y +K + G
Sbjct: 758 PTSSGKTFISFYAMEKVLRDNDDGVVIYVAPTKALVNQLSAEVYARFNKHYPHAGQTVWS 817
Query: 112 LMTGDVTLSPNASCLVMTT--EILRGML 137
+ T D ++ +C V+ T +L+ ML
Sbjct: 818 VYTRDYRINNPTNCQVLITVPHVLQSML 845
>sp|A2RUV5|HFM1_XENTR Probable ATP-dependent DNA helicase HFM1 OS=Xenopus tropicalis
GN=hfm1 PE=2 SV=1
Length = 1336
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 60 LTNPVYNGKTAVAEYAIAMAFRD------KQRVIYTSSLKALSNQKYRELHKEFKDVGL- 112
L P +GKT + E AI +++Y + +KAL Q+Y + +F VGL
Sbjct: 170 LCAPTGSGKTVIFELAIIRLLMQVPMPWTNVKIVYMAPIKALCGQRYDDWKAKFGPVGLN 229
Query: 113 ---MTGD 116
+TGD
Sbjct: 230 CKELTGD 236
>sp|Q0W6L1|HELS_UNCMA Putative ski2-type helicase OS=Uncultured methanogenic archaeon
RC-I GN=UNCMA_22030 PE=3 SV=1
Length = 740
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 63 PVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFK--------DVGLMT 114
P +GKT +AE A+ + + + IY LKAL+++KY + K VG+ T
Sbjct: 47 PTASGKTLLAEMAMLKSIAEGGKAIYIVPLKALASEKYDRFLEFSKLPIKPDGVKVGIAT 106
Query: 115 GD 116
GD
Sbjct: 107 GD 108
>sp|Q5JGV6|HELS_PYRKO Putative ski2-type helicase OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1332 PE=3 SV=1
Length = 1125
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 60 LTNPVYNGKTAVAEYA-IAMAFRDKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVT 118
L P +GKT V+E + + + +Y LKAL+ +KYRE KE++ +GL T
Sbjct: 44 LAIPTASGKTLVSEIVMVNKLLSEGGKAVYLVPLKALAEEKYREF-KEWEVLGLRVAATT 102
>sp|B2VDD5|RLMG_ERWT9 Ribosomal RNA large subunit methyltransferase G OS=Erwinia
tasmaniensis (strain DSM 17950 / Et1/99) GN=rlmG PE=3
SV=1
Length = 375
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 57 HGTLTNPVYNGKTAVAEYAIAMAFRDKQRVI-YTSSLKALSNQKYRELHKEFKDVG 111
H L NP ++ + AV ++ FRD +R + Y L+ + N+ HK K G
Sbjct: 300 HAVLCNPPFHQQNAVTDHIAWQMFRDARRCLQYGGELRIVGNRHLDYYHKMKKLFG 355
>sp|Q58524|HELS_METJA Putative ski2-type helicase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1124 PE=3 SV=1
Length = 1195
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 53 DETTHGTLTNPVYNGKTAVAEYAIAMAFRD------KQRVIYTSSLKALSNQKYRELHKE 106
D+ + ++ P +GKT + E A+ D ++ I+ LKAL+++KY E +
Sbjct: 30 DKNKNFLISIPTASGKTLIGEMALINHLLDGNKNPTNKKGIFIVPLKALASEKYEEFKSK 89
Query: 107 FKDVGL 112
++ GL
Sbjct: 90 YERYGL 95
>sp|Q5UYM9|HELS_HALMA Putative ski2-type helicase OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rrnAC2876
PE=3 SV=1
Length = 799
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 63 PVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQK---YRELHKEFKDVGLMTGD 116
P +GKT +AE A+ + + +Y L+AL+++K + E + D+G+ TG+
Sbjct: 48 PTASGKTLIAELAMLSSVARGGKALYIVPLRALASEKQADFEEFEQYGLDIGVSTGN 104
>sp|Q09475|YP93_CAEEL Uncharacterized helicase C28H8.3 OS=Caenorhabditis elegans
GN=C28H8.3 PE=3 SV=2
Length = 1714
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 51 TTDETTHGTLTNPVYNGKTAVAEYAIAMAFR--DKQRVIYTSSLKALSNQKYRELHKEFK 108
+ D + P GKT V+ Y I R D V+Y + KAL NQ ++ F+
Sbjct: 795 SVDRGNSALIIAPTSAGKTFVSYYCIEKVLRSSDNDVVVYVAPSKALINQVCGSVYARFR 854
Query: 109 DVGLMTG 115
+ + G
Sbjct: 855 NKSMKRG 861
>sp|B0D0P0|PRM1_LACBS Plasma membrane fusion protein PRM1 OS=Laccaria bicolor (strain
S238N-H82 / ATCC MYA-4686) GN=PRM1 PE=3 SV=2
Length = 1026
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 6 TPGKRKAPKADSHVRGTPKEE----STKKQRNPT-RSCVHEVAVPSCYTLTTDETTHGTL 60
+P AP + + P +E ST + NPT +S H VA+P+ LTT + H +
Sbjct: 931 SPPPPFAPYRTNKLPNPPYDEQRRTSTLRVMNPTFKSSDHTVAMPASRLLTTMDARHSSA 990
Query: 61 TNP 63
NP
Sbjct: 991 INP 993
>sp|Q5ABG1|SET1_CANAL Histone-lysine N-methyltransferase, H3 lysine-4 specific OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=SET1 PE=3
SV=1
Length = 1040
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 38 CVHEVAVPSCYTLTTDETTHGTLTNPVYNGKT--AVAEYAIAMAFRDKQRVIYTSSLKAL 95
V E+A+P +T E + TN V + T + E+ +A ++R+I + L L
Sbjct: 485 LVMEMAIPEGFTNNIRENESKS-TNDVLDEATNILIKEFQTFLAKDIRERIIAPNILDLL 543
Query: 96 SNQKYRELHKEFK 108
++ KY EL +E K
Sbjct: 544 AHDKYPELVEELK 556
>sp|Q58796|Y1401_METJA Probable ATP-dependent helicase MJ1401 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1401 PE=3 SV=1
Length = 808
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 66 NGKTAVAEYA-IAMAFRDKQRVIYTSSLKALSNQKYRELHKEFKDVGL 112
+GKT + E A I + ++ ++ L AL+NQKY E + ++ +G
Sbjct: 238 SGKTLIGELAGIKNLIKTGKKFLFLVPLVALANQKYLEFKERYEKLGF 285
>sp|Q864R9|MRP1_MACFA Multidrug resistance-associated protein 1 OS=Macaca fascicularis
GN=ABCC1 PE=2 SV=1
Length = 1531
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 60 LTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKY 100
L N + NG + YA +AF+DK I LK L Y
Sbjct: 504 LMNEILNGIKVLKLYAWELAFKDKVLAIRQEELKVLKKSAY 544
>sp|P33527|MRP1_HUMAN Multidrug resistance-associated protein 1 OS=Homo sapiens GN=ABCC1
PE=1 SV=3
Length = 1531
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 60 LTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKY 100
L N + NG + YA +AF+DK I LK L Y
Sbjct: 504 LMNEILNGIKVLKLYAWELAFKDKVLAIRQEELKVLKKSAY 544
>sp|Q6UR05|MRP1_CANFA Multidrug resistance-associated protein 1 OS=Canis familiaris
GN=ABCC1 PE=2 SV=1
Length = 1531
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 60 LTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKY 100
L N + NG + YA +AF+DK I LK L Y
Sbjct: 504 LMNEILNGIKVLKLYAWELAFKDKVLAIRQEELKVLKKSAY 544
>sp|Q8HXQ5|MRP1_BOVIN Multidrug resistance-associated protein 1 OS=Bos taurus GN=ABCC1
PE=2 SV=1
Length = 1530
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 60 LTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKY 100
L N + NG + YA +AF+DK I LK L Y
Sbjct: 504 LMNEILNGIKVLKLYAWELAFKDKVLAIRQEELKVLKKSAY 544
>sp|O26901|HELS_METTH Putative ski2-type helicase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_810 PE=3 SV=1
Length = 690
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 63 PVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHK 105
P +GKT + A + RVIYT L ++ N+K +E K
Sbjct: 46 PTASGKTLLGIIAALKTVMEGGRVIYTVPLLSIQNEKIKEFRK 88
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.126 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,253,897
Number of Sequences: 539616
Number of extensions: 1808917
Number of successful extensions: 4135
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 4100
Number of HSP's gapped (non-prelim): 61
length of query: 138
length of database: 191,569,459
effective HSP length: 103
effective length of query: 35
effective length of database: 135,989,011
effective search space: 4759615385
effective search space used: 4759615385
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)