Query 042424
Match_columns 138
No_of_seqs 185 out of 1377
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 10:09:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042424.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042424hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f92_B U5 small nuclear ribonu 99.8 7.2E-19 2.5E-23 168.0 9.7 86 53-138 93-197 (1724)
2 2xgj_A ATP-dependent RNA helic 99.7 6.8E-18 2.3E-22 154.8 9.4 83 56-138 102-184 (1010)
3 3l9o_A ATP-dependent RNA helic 99.7 6.1E-17 2.1E-21 149.7 11.0 83 56-138 200-282 (1108)
4 4f92_B U5 small nuclear ribonu 99.7 1.5E-17 5.2E-22 159.0 5.7 85 53-137 940-1035(1724)
5 3ly5_A ATP-dependent RNA helic 99.6 1.3E-15 4.5E-20 119.2 9.6 82 56-137 92-191 (262)
6 3iuy_A Probable ATP-dependent 99.6 3.6E-15 1.2E-19 113.1 10.9 83 55-137 57-158 (228)
7 3fe2_A Probable ATP-dependent 99.6 2.9E-15 9.9E-20 115.2 8.9 83 55-137 66-167 (242)
8 2pl3_A Probable ATP-dependent 99.6 6.8E-15 2.3E-19 112.1 10.1 83 55-137 62-161 (236)
9 3dkp_A Probable ATP-dependent 99.6 3E-15 1E-19 114.7 7.5 83 55-137 66-164 (245)
10 1qde_A EIF4A, translation init 99.6 1.2E-14 4.1E-19 109.6 9.9 83 55-137 51-146 (224)
11 2p6r_A Afuhel308 helicase; pro 99.6 6.8E-15 2.3E-19 129.0 9.7 82 55-137 40-129 (702)
12 1wrb_A DJVLGB; RNA helicase, D 99.6 1.3E-14 4.6E-19 111.7 10.2 83 55-137 60-165 (253)
13 4a4z_A Antiviral helicase SKI2 99.6 5.5E-15 1.9E-19 135.4 9.3 84 55-138 54-139 (997)
14 3fmo_B ATP-dependent RNA helic 99.6 1.4E-14 4.8E-19 115.9 10.5 82 56-137 132-225 (300)
15 2gxq_A Heat resistant RNA depe 99.6 1.3E-14 4.6E-19 107.7 9.5 83 55-137 38-135 (207)
16 1vec_A ATP-dependent RNA helic 99.6 9.5E-15 3.2E-19 108.7 8.6 83 55-137 40-137 (206)
17 2oxc_A Probable ATP-dependent 99.6 1.1E-14 3.6E-19 111.2 8.7 83 55-137 61-157 (230)
18 2va8_A SSO2462, SKI2-type heli 99.6 1.9E-14 6.3E-19 126.1 11.1 84 54-137 45-136 (715)
19 2zj8_A DNA helicase, putative 99.5 1.1E-14 3.7E-19 128.0 8.9 84 54-137 38-129 (720)
20 3ber_A Probable ATP-dependent 99.5 1.9E-14 6.5E-19 111.8 9.3 83 55-137 80-176 (249)
21 1q0u_A Bstdead; DEAD protein, 99.5 9.9E-15 3.4E-19 110.3 7.3 83 55-137 41-141 (219)
22 3oiy_A Reverse gyrase helicase 99.5 1.7E-14 5.9E-19 117.9 9.1 83 55-137 36-132 (414)
23 3bor_A Human initiation factor 99.5 1.8E-14 6.2E-19 110.6 8.5 83 55-137 67-164 (237)
24 3tbk_A RIG-I helicase domain; 99.5 3.1E-14 1E-18 118.6 10.5 83 55-137 19-117 (555)
25 4a2p_A RIG-I, retinoic acid in 99.5 2.7E-14 9.2E-19 119.4 9.7 83 55-137 22-120 (556)
26 1t6n_A Probable ATP-dependent 99.5 2.9E-14 9.8E-19 107.4 8.7 83 55-137 51-149 (220)
27 3pey_A ATP-dependent RNA helic 99.5 6.6E-14 2.2E-18 111.8 10.5 82 56-137 45-136 (395)
28 3fht_A ATP-dependent RNA helic 99.5 1.3E-13 4.5E-18 111.0 10.8 82 56-137 65-158 (412)
29 2db3_A ATP-dependent RNA helic 99.5 6.8E-14 2.3E-18 116.4 9.3 83 55-137 93-194 (434)
30 2i4i_A ATP-dependent RNA helic 99.5 7.1E-14 2.4E-18 113.2 8.9 83 55-137 52-166 (417)
31 3b6e_A Interferon-induced heli 99.5 8.7E-14 3E-18 103.3 8.5 83 55-137 48-147 (216)
32 3i5x_A ATP-dependent RNA helic 99.5 8E-14 2.7E-18 118.2 8.5 82 56-137 112-216 (563)
33 2ykg_A Probable ATP-dependent 99.5 2.4E-13 8.3E-18 117.8 11.5 83 55-137 28-126 (696)
34 1s2m_A Putative ATP-dependent 99.5 1.5E-13 5E-18 111.0 9.4 82 56-137 59-154 (400)
35 1hv8_A Putative ATP-dependent 99.5 1.3E-13 4.4E-18 109.0 8.3 82 56-137 45-138 (367)
36 3fmp_B ATP-dependent RNA helic 99.5 1.6E-13 5.5E-18 114.5 9.2 82 56-137 132-225 (479)
37 4a2q_A RIG-I, retinoic acid in 99.5 2.5E-13 8.5E-18 120.8 10.8 83 55-137 263-361 (797)
38 2z0m_A 337AA long hypothetical 99.5 2.5E-13 8.5E-18 106.5 9.5 80 55-137 31-120 (337)
39 2j0s_A ATP-dependent RNA helic 99.5 1.5E-13 5.2E-18 111.4 8.2 83 55-137 74-170 (410)
40 1xti_A Probable ATP-dependent 99.5 2E-13 6.7E-18 109.5 8.8 83 55-137 45-143 (391)
41 3eiq_A Eukaryotic initiation f 99.4 1.7E-13 5.9E-18 110.6 8.3 83 55-137 77-174 (414)
42 1rif_A DAR protein, DNA helica 99.4 4.4E-13 1.5E-17 105.2 9.9 80 56-135 129-217 (282)
43 1fuu_A Yeast initiation factor 99.4 1.3E-13 4.3E-18 110.5 6.8 82 56-137 59-153 (394)
44 4gl2_A Interferon-induced heli 99.4 1.5E-13 5.1E-18 119.2 7.3 82 56-137 23-121 (699)
45 1wp9_A ATP-dependent RNA helic 99.4 3.5E-13 1.2E-17 108.8 9.1 81 57-137 25-116 (494)
46 3fho_A ATP-dependent RNA helic 99.4 5.3E-13 1.8E-17 113.3 9.2 82 56-137 159-250 (508)
47 2oca_A DAR protein, ATP-depend 99.4 7.2E-13 2.5E-17 111.1 9.9 80 56-135 129-217 (510)
48 1gm5_A RECG; helicase, replica 99.4 4.2E-13 1.4E-17 120.5 8.4 80 56-135 390-484 (780)
49 3sqw_A ATP-dependent RNA helic 99.4 5.7E-13 2E-17 114.3 8.5 82 56-137 61-165 (579)
50 4ddu_A Reverse gyrase; topoiso 99.4 1.6E-12 5.5E-17 120.2 10.6 81 55-136 93-188 (1104)
51 4a2w_A RIG-I, retinoic acid in 99.4 9.9E-13 3.4E-17 119.5 7.9 83 55-137 263-361 (936)
52 2fwr_A DNA repair protein RAD2 99.4 2.3E-12 7.9E-17 107.1 9.3 75 56-136 109-185 (472)
53 2fz4_A DNA repair protein RAD2 99.3 8.9E-12 3.1E-16 96.5 9.0 75 56-136 109-185 (237)
54 1gku_B Reverse gyrase, TOP-RG; 99.3 6.1E-12 2.1E-16 115.7 8.0 83 55-137 71-170 (1054)
55 2eyq_A TRCF, transcription-rep 99.2 1.2E-11 4.3E-16 114.7 8.2 79 57-135 626-719 (1151)
56 3o8b_A HCV NS3 protease/helica 99.2 2.6E-11 8.9E-16 107.5 8.9 77 56-135 233-310 (666)
57 2v1x_A ATP-dependent DNA helic 99.2 6.1E-11 2.1E-15 103.2 9.2 76 55-134 59-148 (591)
58 3llm_A ATP-dependent RNA helic 99.2 1.7E-10 5.9E-15 88.4 10.0 82 56-137 77-170 (235)
59 3h1t_A Type I site-specific re 99.1 2.8E-11 9.7E-16 103.7 5.0 79 56-136 199-288 (590)
60 1oyw_A RECQ helicase, ATP-depe 99.1 4.4E-11 1.5E-15 102.3 6.1 77 55-135 40-128 (523)
61 2v6i_A RNA helicase; membrane, 99.1 1.7E-10 5.9E-15 96.3 6.8 78 56-135 3-83 (431)
62 2jlq_A Serine protease subunit 99.0 7.3E-10 2.5E-14 92.9 7.7 78 57-136 21-101 (451)
63 2fsf_A Preprotein translocase 99.0 4.9E-10 1.7E-14 101.4 6.9 75 59-133 91-174 (853)
64 1z63_A Helicase of the SNF2/RA 99.0 2E-09 6.9E-14 89.9 9.1 79 56-135 57-141 (500)
65 3rc3_A ATP-dependent RNA helic 98.9 1.5E-09 5E-14 96.3 7.6 75 56-134 156-235 (677)
66 3dmq_A RNA polymerase-associat 98.9 1.8E-09 6E-14 98.6 8.0 79 56-135 171-261 (968)
67 1tf5_A Preprotein translocase 98.9 1.7E-09 5.7E-14 98.0 7.4 75 59-133 100-183 (844)
68 2z83_A Helicase/nucleoside tri 98.9 2.4E-09 8.3E-14 90.0 7.2 78 55-134 21-101 (459)
69 2ipc_A Preprotein translocase 98.9 2.9E-09 9.8E-14 97.3 6.8 75 59-133 96-179 (997)
70 1nkt_A Preprotein translocase 98.8 3.8E-09 1.3E-13 96.2 6.8 76 58-133 127-211 (922)
71 1yks_A Genome polyprotein [con 98.8 1.7E-09 6E-14 90.5 4.3 51 55-105 8-59 (440)
72 2xau_A PRE-mRNA-splicing facto 98.8 9.8E-09 3.3E-13 91.9 7.4 82 56-137 110-200 (773)
73 2whx_A Serine protease/ntpase/ 98.8 1.1E-08 3.8E-13 89.5 7.3 78 55-135 186-267 (618)
74 2w00_A HSDR, R.ECOR124I; ATP-b 98.7 9.5E-09 3.2E-13 94.8 4.7 79 56-136 301-389 (1038)
75 3crv_A XPD/RAD3 related DNA he 98.7 1.7E-08 5.8E-13 86.6 5.3 57 56-115 23-83 (551)
76 2vl7_A XPD; helicase, unknown 98.6 5.6E-08 1.9E-12 83.3 7.6 49 56-108 27-75 (540)
77 2wv9_A Flavivirin protease NS2 98.6 1.6E-08 5.5E-13 89.4 4.1 51 55-105 241-292 (673)
78 3mwy_W Chromo domain-containin 98.5 3.4E-07 1.1E-11 81.8 8.6 80 55-135 255-358 (800)
79 4a15_A XPD helicase, ATP-depen 98.4 3.3E-07 1.1E-11 80.2 6.8 52 55-106 22-74 (620)
80 1z3i_X Similar to RAD54-like; 98.3 1.3E-06 4.5E-11 76.3 8.5 79 56-135 80-183 (644)
81 3jux_A Protein translocase sub 97.4 0.00046 1.6E-08 62.3 8.9 59 56-115 89-152 (822)
82 4b3f_X DNA-binding protein smu 97.3 0.00043 1.5E-08 60.2 7.2 48 58-105 208-255 (646)
83 1c4o_A DNA nucleotide excision 97.0 0.0019 6.4E-08 56.8 8.0 48 58-108 31-78 (664)
84 3lfu_A DNA helicase II; SF1 he 96.9 0.0017 5.7E-08 55.6 6.8 53 56-108 23-79 (647)
85 2gk6_A Regulator of nonsense t 96.8 0.002 6.8E-08 56.0 6.6 49 57-105 197-246 (624)
86 2xzl_A ATP-dependent helicase 96.6 0.0041 1.4E-07 55.9 7.0 48 58-105 378-426 (802)
87 1w36_D RECD, exodeoxyribonucle 96.5 0.0041 1.4E-07 54.0 6.4 50 56-105 165-218 (608)
88 2wjy_A Regulator of nonsense t 96.3 0.0072 2.5E-07 54.4 6.6 48 58-105 374-422 (800)
89 3upu_A ATP-dependent DNA helic 96.1 0.012 4E-07 49.0 6.7 47 57-103 47-94 (459)
90 2dr3_A UPF0273 protein PH0284; 95.9 0.0087 3E-07 44.4 4.7 46 58-104 26-71 (247)
91 1uaa_A REP helicase, protein ( 95.9 0.014 4.8E-07 50.7 6.5 53 56-108 16-72 (673)
92 2w58_A DNAI, primosome compone 95.8 0.01 3.4E-07 43.2 4.5 43 56-99 55-97 (202)
93 2b8t_A Thymidine kinase; deoxy 95.7 0.012 4.3E-07 45.1 4.9 35 59-93 16-50 (223)
94 2d7d_A Uvrabc system protein B 95.7 0.017 5.9E-07 50.6 6.4 48 58-108 35-82 (661)
95 3e1s_A Exodeoxyribonuclease V, 95.7 0.021 7.3E-07 49.3 6.8 47 56-102 205-251 (574)
96 3ec2_A DNA replication protein 95.6 0.015 5.2E-07 41.6 4.9 47 56-103 39-86 (180)
97 2zts_A Putative uncharacterize 95.6 0.016 5.4E-07 42.9 4.8 46 58-104 33-79 (251)
98 2qgz_A Helicase loader, putati 95.6 0.014 4.8E-07 46.4 4.8 43 56-99 153-196 (308)
99 1pjr_A PCRA; DNA repair, DNA r 95.5 0.029 1E-06 49.4 7.0 54 55-108 24-81 (724)
100 2orw_A Thymidine kinase; TMTK, 95.5 0.016 5.6E-07 42.6 4.6 35 59-93 7-41 (184)
101 3u4q_A ATP-dependent helicase/ 95.5 0.023 7.8E-07 53.1 6.5 53 55-107 23-81 (1232)
102 1xx6_A Thymidine kinase; NESG, 95.3 0.02 7E-07 42.8 4.8 35 59-93 12-46 (191)
103 3bos_A Putative DNA replicatio 95.3 0.023 7.8E-07 41.5 4.8 36 56-91 53-88 (242)
104 1e9r_A Conjugal transfer prote 95.0 0.027 9.4E-07 46.1 5.1 43 55-97 53-95 (437)
105 2w0m_A SSO2452; RECA, SSPF, un 95.0 0.03 1E-06 40.8 4.8 34 58-91 26-59 (235)
106 1l8q_A Chromosomal replication 94.8 0.089 3.1E-06 41.1 7.2 43 56-99 38-80 (324)
107 4ag6_A VIRB4 ATPase, type IV s 94.6 0.045 1.5E-06 44.3 5.2 49 55-108 35-83 (392)
108 1jbk_A CLPB protein; beta barr 94.4 0.053 1.8E-06 37.7 4.7 23 56-78 44-66 (195)
109 2kjq_A DNAA-related protein; s 94.4 0.035 1.2E-06 39.5 3.7 34 57-90 38-71 (149)
110 3bh0_A DNAB-like replicative h 94.4 0.046 1.6E-06 43.3 4.7 35 58-92 71-105 (315)
111 3io5_A Recombination and repai 94.4 0.028 9.5E-07 46.1 3.4 39 58-96 31-71 (333)
112 2px0_A Flagellar biosynthesis 94.3 0.064 2.2E-06 42.5 5.4 46 58-103 108-156 (296)
113 2cvh_A DNA repair and recombin 94.3 0.046 1.6E-06 39.7 4.2 32 58-92 23-54 (220)
114 3dm5_A SRP54, signal recogniti 94.1 0.095 3.2E-06 44.3 6.3 50 58-107 103-154 (443)
115 3hr8_A Protein RECA; alpha and 94.1 0.045 1.5E-06 44.9 4.2 37 59-95 65-101 (356)
116 3hjh_A Transcription-repair-co 94.1 0.39 1.3E-05 40.8 10.1 52 57-111 16-68 (483)
117 1u94_A RECA protein, recombina 94.0 0.044 1.5E-06 44.7 4.0 34 58-91 66-99 (356)
118 2p65_A Hypothetical protein PF 94.0 0.051 1.7E-06 37.9 3.8 23 56-78 44-66 (187)
119 2zr9_A Protein RECA, recombina 94.0 0.058 2E-06 43.8 4.6 35 58-92 64-98 (349)
120 1xp8_A RECA protein, recombina 93.6 0.077 2.6E-06 43.5 4.7 35 58-92 77-111 (366)
121 3kl4_A SRP54, signal recogniti 93.5 0.15 5.2E-06 42.8 6.5 50 58-107 100-151 (433)
122 2z43_A DNA repair and recombin 93.5 0.05 1.7E-06 43.2 3.4 37 58-94 110-152 (324)
123 3bgw_A DNAB-like replicative h 93.5 0.075 2.6E-06 44.4 4.5 35 58-92 200-234 (444)
124 1w4r_A Thymidine kinase; type 93.4 0.095 3.2E-06 39.7 4.6 33 60-92 25-57 (195)
125 3vkw_A Replicase large subunit 93.2 0.073 2.5E-06 45.1 4.1 41 60-105 166-206 (446)
126 2ehv_A Hypothetical protein PH 93.2 0.12 4E-06 38.2 4.8 34 58-91 33-67 (251)
127 2qby_B CDC6 homolog 3, cell di 93.2 0.2 6.8E-06 39.4 6.4 34 57-90 47-88 (384)
128 1n0w_A DNA repair protein RAD5 93.1 0.074 2.5E-06 39.2 3.6 35 58-92 27-67 (243)
129 2j9r_A Thymidine kinase; TK1, 93.0 0.13 4.5E-06 39.4 5.0 35 60-94 33-67 (214)
130 1v5w_A DMC1, meiotic recombina 93.0 0.073 2.5E-06 42.7 3.7 37 58-94 125-167 (343)
131 3n70_A Transport activator; si 92.8 0.056 1.9E-06 37.7 2.4 20 56-75 25-44 (145)
132 1g5t_A COB(I)alamin adenosyltr 92.8 0.14 4.8E-06 38.8 4.7 34 56-89 29-62 (196)
133 2z4s_A Chromosomal replication 92.7 0.23 7.9E-06 41.1 6.4 45 56-101 131-177 (440)
134 4a1f_A DNAB helicase, replicat 92.7 0.12 4.3E-06 41.9 4.7 35 58-92 49-83 (338)
135 1vma_A Cell division protein F 92.7 0.3 1E-05 38.9 6.8 46 59-105 108-156 (306)
136 2bjv_A PSP operon transcriptio 92.3 0.087 3E-06 39.9 3.1 20 56-75 30-49 (265)
137 2q6t_A DNAB replication FORK h 92.3 0.15 5.1E-06 42.2 4.7 35 58-92 203-238 (444)
138 2r6a_A DNAB helicase, replicat 92.2 0.17 5.7E-06 42.0 5.0 35 58-92 206-241 (454)
139 4fcw_A Chaperone protein CLPB; 92.2 0.11 3.8E-06 39.8 3.7 33 57-89 49-81 (311)
140 1cr0_A DNA primase/helicase; R 92.1 0.18 6E-06 38.9 4.7 33 59-91 39-72 (296)
141 3cmw_A Protein RECA, recombina 92.0 0.11 3.6E-06 50.6 3.9 40 60-99 1436-1475(1706)
142 2r8r_A Sensor protein; KDPD, P 91.8 0.2 6.9E-06 38.8 4.6 33 57-89 8-40 (228)
143 2r2a_A Uncharacterized protein 91.8 0.093 3.2E-06 39.3 2.6 34 59-92 9-47 (199)
144 3syl_A Protein CBBX; photosynt 91.7 0.19 6.5E-06 38.5 4.5 36 56-91 68-107 (309)
145 2v1u_A Cell division control p 91.7 0.36 1.2E-05 37.6 6.1 35 56-90 45-85 (387)
146 1q57_A DNA primase/helicase; d 91.6 0.11 3.7E-06 43.6 3.1 35 58-92 245-280 (503)
147 3cmu_A Protein RECA, recombina 91.6 0.12 4E-06 51.1 3.7 38 56-93 1428-1465(2050)
148 2eyu_A Twitching motility prot 91.3 0.24 8.1E-06 38.4 4.6 16 58-73 28-43 (261)
149 2chg_A Replication factor C sm 91.3 0.12 4.2E-06 36.6 2.8 22 57-78 40-61 (226)
150 1nlf_A Regulatory protein REPA 91.2 0.36 1.2E-05 37.0 5.5 35 58-93 33-78 (279)
151 2jgn_A DBX, DDX3, ATP-dependen 91.2 0.74 2.5E-05 33.3 7.0 65 65-130 29-104 (185)
152 3u4q_B ATP-dependent helicase/ 90.8 0.39 1.3E-05 44.4 6.2 46 59-105 5-53 (1166)
153 1c9k_A COBU, adenosylcobinamid 90.8 0.1 3.5E-06 38.9 2.0 43 59-105 3-45 (180)
154 3co5_A Putative two-component 90.8 0.11 3.8E-06 36.1 2.0 18 56-73 28-45 (143)
155 2qz4_A Paraplegin; AAA+, SPG7, 90.7 0.28 9.5E-06 36.5 4.4 33 56-91 40-72 (262)
156 3eie_A Vacuolar protein sortin 90.6 0.33 1.1E-05 38.1 4.8 33 56-91 52-84 (322)
157 2orv_A Thymidine kinase; TP4A 90.5 0.31 1.1E-05 37.9 4.5 35 60-94 24-58 (234)
158 1ofh_A ATP-dependent HSL prote 90.4 0.34 1.2E-05 36.8 4.7 32 56-90 51-82 (310)
159 2hjv_A ATP-dependent RNA helic 90.3 0.79 2.7E-05 32.2 6.3 48 82-130 34-93 (163)
160 3a8t_A Adenylate isopentenyltr 90.3 0.14 4.8E-06 41.8 2.5 17 58-74 43-59 (339)
161 4a74_A DNA repair and recombin 90.2 0.22 7.5E-06 36.2 3.4 35 59-93 29-69 (231)
162 3jvv_A Twitching mobility prot 90.1 0.33 1.1E-05 39.5 4.6 31 57-88 125-157 (356)
163 3cmu_A Protein RECA, recombina 90.1 0.26 8.9E-06 48.7 4.6 37 56-92 1082-1118(2050)
164 2ewv_A Twitching motility prot 90.1 0.33 1.1E-05 39.4 4.6 18 57-74 138-155 (372)
165 1zu4_A FTSY; GTPase, signal re 90.0 0.38 1.3E-05 38.4 4.9 57 59-116 109-171 (320)
166 2yvu_A Probable adenylyl-sulfa 89.9 0.46 1.6E-05 33.8 4.9 32 58-89 16-47 (186)
167 1nks_A Adenylate kinase; therm 89.8 0.69 2.4E-05 32.4 5.7 31 58-89 4-35 (194)
168 3vfd_A Spastin; ATPase, microt 89.8 0.42 1.4E-05 38.5 5.0 33 56-91 149-181 (389)
169 3b9p_A CG5977-PA, isoform A; A 89.8 0.22 7.5E-06 38.1 3.2 20 56-75 55-74 (297)
170 1fnn_A CDC6P, cell division co 89.8 0.3 1E-05 38.3 4.0 34 57-90 46-80 (389)
171 2qby_A CDC6 homolog 1, cell di 89.7 0.37 1.3E-05 37.5 4.5 35 56-90 46-83 (386)
172 3cmw_A Protein RECA, recombina 89.7 0.32 1.1E-05 47.3 4.8 38 56-93 35-72 (1706)
173 2qp9_X Vacuolar protein sortin 89.7 0.44 1.5E-05 38.2 5.0 32 56-90 85-116 (355)
174 3t15_A Ribulose bisphosphate c 89.6 0.29 1E-05 38.1 3.8 32 57-91 38-69 (293)
175 2ze6_A Isopentenyl transferase 89.6 0.22 7.6E-06 38.0 3.1 16 59-74 5-20 (253)
176 3lw7_A Adenylate kinase relate 89.6 0.16 5.4E-06 34.9 2.0 17 59-75 5-21 (179)
177 1p9r_A General secretion pathw 89.5 0.26 9E-06 41.0 3.6 31 58-89 170-201 (418)
178 2i1q_A DNA repair and recombin 89.5 0.25 8.5E-06 38.7 3.4 37 58-94 101-153 (322)
179 3d8b_A Fidgetin-like protein 1 89.4 0.45 1.5E-05 38.0 4.9 33 56-91 118-150 (357)
180 2rb4_A ATP-dependent RNA helic 89.4 0.72 2.5E-05 32.7 5.5 47 83-130 34-92 (175)
181 1kgd_A CASK, peripheral plasma 89.3 0.22 7.7E-06 35.7 2.7 18 58-75 8-25 (180)
182 2v3c_C SRP54, signal recogniti 89.2 0.27 9.3E-06 41.0 3.5 34 57-90 101-134 (432)
183 3exa_A TRNA delta(2)-isopenten 89.2 0.19 6.6E-06 40.8 2.5 15 59-73 7-21 (322)
184 3h4m_A Proteasome-activating n 89.1 0.38 1.3E-05 36.5 4.0 33 56-91 52-84 (285)
185 3foz_A TRNA delta(2)-isopenten 89.0 0.25 8.5E-06 40.1 3.1 15 59-73 14-28 (316)
186 1xjc_A MOBB protein homolog; s 89.0 0.58 2E-05 34.3 4.9 32 59-90 8-39 (169)
187 3tau_A Guanylate kinase, GMP k 88.9 0.24 8.1E-06 36.4 2.7 17 59-75 12-28 (208)
188 2ffh_A Protein (FFH); SRP54, s 88.9 0.89 3.1E-05 38.0 6.5 47 59-105 102-150 (425)
189 3trf_A Shikimate kinase, SK; a 88.8 0.28 9.7E-06 34.7 2.9 18 57-74 7-24 (185)
190 1ojl_A Transcriptional regulat 88.8 0.21 7.2E-06 39.3 2.4 20 56-75 26-45 (304)
191 3uie_A Adenylyl-sulfate kinase 88.8 0.62 2.1E-05 33.7 4.9 16 59-74 29-44 (200)
192 3lda_A DNA repair protein RAD5 88.6 0.29 9.8E-06 40.5 3.3 35 58-92 181-221 (400)
193 1d2n_A N-ethylmaleimide-sensit 88.6 0.26 9E-06 37.4 2.8 31 56-89 65-95 (272)
194 3hws_A ATP-dependent CLP prote 88.5 0.33 1.1E-05 38.6 3.5 20 56-75 52-71 (363)
195 2xxa_A Signal recognition part 88.5 0.54 1.8E-05 39.2 4.9 43 58-100 103-148 (433)
196 1xwi_A SKD1 protein; VPS4B, AA 88.5 0.34 1.2E-05 38.3 3.5 20 56-75 46-65 (322)
197 3b9q_A Chloroplast SRP recepto 88.5 0.58 2E-05 37.0 4.9 32 59-90 104-135 (302)
198 1rz3_A Hypothetical protein rb 88.4 0.6 2E-05 34.0 4.6 31 59-89 26-56 (201)
199 3pxi_A Negative regulator of g 88.4 0.41 1.4E-05 42.1 4.3 20 57-76 523-542 (758)
200 2r62_A Cell division protease 88.3 0.29 1E-05 36.8 2.9 21 56-76 45-65 (268)
201 1ex7_A Guanylate kinase; subst 88.3 0.35 1.2E-05 35.9 3.2 21 56-76 2-22 (186)
202 1byi_A Dethiobiotin synthase; 88.3 0.7 2.4E-05 33.6 4.9 32 60-91 7-38 (224)
203 2vhj_A Ntpase P4, P4; non- hyd 88.2 0.18 6.3E-06 41.1 1.8 31 58-91 126-156 (331)
204 3bs4_A Uncharacterized protein 88.2 0.5 1.7E-05 37.0 4.2 35 58-92 24-58 (260)
205 1um8_A ATP-dependent CLP prote 87.9 0.49 1.7E-05 37.7 4.2 19 56-74 73-91 (376)
206 1hqc_A RUVB; extended AAA-ATPa 87.9 0.61 2.1E-05 35.8 4.6 20 56-75 39-58 (324)
207 1j8m_F SRP54, signal recogniti 87.9 0.54 1.8E-05 37.1 4.3 46 59-105 102-150 (297)
208 3tr0_A Guanylate kinase, GMP k 87.8 0.32 1.1E-05 34.9 2.7 16 59-74 11-26 (205)
209 1lv7_A FTSH; alpha/beta domain 87.8 0.36 1.2E-05 36.2 3.1 19 56-74 46-64 (257)
210 1fuk_A Eukaryotic initiation f 87.8 1.3 4.3E-05 31.1 5.9 49 82-130 29-88 (165)
211 1tf7_A KAIC; homohexamer, hexa 87.8 0.56 1.9E-05 39.6 4.6 36 58-93 284-319 (525)
212 1rj9_A FTSY, signal recognitio 87.6 0.64 2.2E-05 36.8 4.6 32 58-90 105-137 (304)
213 3crm_A TRNA delta(2)-isopenten 87.5 0.36 1.2E-05 39.1 3.1 17 58-74 8-24 (323)
214 1f2t_A RAD50 ABC-ATPase; DNA d 87.4 0.44 1.5E-05 33.6 3.2 16 58-73 26-41 (149)
215 3d3q_A TRNA delta(2)-isopenten 87.4 0.36 1.2E-05 39.4 3.1 17 58-74 10-26 (340)
216 2z0h_A DTMP kinase, thymidylat 87.3 0.88 3E-05 32.2 4.8 30 59-88 4-33 (197)
217 3e70_C DPA, signal recognition 87.3 0.74 2.5E-05 36.9 4.9 47 59-105 133-181 (328)
218 2oap_1 GSPE-2, type II secreti 87.3 0.26 8.8E-06 42.0 2.2 32 56-88 261-292 (511)
219 2p6n_A ATP-dependent RNA helic 87.2 1.6 5.5E-05 31.7 6.3 48 83-130 54-112 (191)
220 3te6_A Regulatory protein SIR3 87.1 0.42 1.4E-05 38.4 3.3 24 56-79 46-69 (318)
221 4b4t_L 26S protease subunit RP 86.9 0.71 2.4E-05 38.8 4.7 33 56-91 216-248 (437)
222 1ls1_A Signal recognition part 86.9 0.82 2.8E-05 35.9 4.8 31 59-90 102-133 (295)
223 1qhx_A CPT, protein (chloramph 86.9 0.29 1E-05 34.3 2.0 17 58-74 6-22 (178)
224 3a00_A Guanylate kinase, GMP k 86.9 0.39 1.3E-05 34.5 2.7 16 59-74 5-20 (186)
225 4b4t_J 26S protease regulatory 86.9 0.81 2.8E-05 38.2 5.0 34 56-92 183-216 (405)
226 3pfi_A Holliday junction ATP-d 86.8 0.44 1.5E-05 37.0 3.2 20 56-75 56-75 (338)
227 4b4t_M 26S protease regulatory 86.8 0.72 2.5E-05 38.7 4.7 33 56-91 216-248 (434)
228 3uk6_A RUVB-like 2; hexameric 86.8 0.38 1.3E-05 37.7 2.8 21 56-76 71-91 (368)
229 3cf0_A Transitional endoplasmi 86.7 0.41 1.4E-05 37.2 3.0 19 56-74 50-68 (301)
230 1t5i_A C_terminal domain of A 86.7 1.9 6.4E-05 30.6 6.3 49 82-130 30-89 (172)
231 1pzn_A RAD51, DNA repair and r 86.6 0.42 1.5E-05 38.4 3.1 34 59-92 135-174 (349)
232 3kb2_A SPBC2 prophage-derived 86.6 0.49 1.7E-05 32.7 3.0 17 58-74 4-20 (173)
233 3e2i_A Thymidine kinase; Zn-bi 86.5 0.81 2.8E-05 35.2 4.5 36 59-94 32-67 (219)
234 3eaq_A Heat resistant RNA depe 86.5 1.6 5.5E-05 32.1 6.1 50 81-130 29-89 (212)
235 3cpe_A Terminase, DNA packagin 86.3 1.5 5.1E-05 37.6 6.5 53 56-108 179-233 (592)
236 2og2_A Putative signal recogni 86.2 0.9 3.1E-05 37.0 4.9 32 59-90 161-192 (359)
237 1lvg_A Guanylate kinase, GMP k 86.2 0.43 1.5E-05 34.8 2.7 18 58-75 7-24 (198)
238 1ly1_A Polynucleotide kinase; 86.1 0.34 1.2E-05 33.7 2.0 17 58-74 5-21 (181)
239 3vaa_A Shikimate kinase, SK; s 86.0 0.54 1.8E-05 34.0 3.1 19 57-75 27-45 (199)
240 1g3q_A MIND ATPase, cell divis 86.0 0.95 3.3E-05 33.1 4.5 30 60-90 8-38 (237)
241 4b4t_K 26S protease regulatory 86.0 0.84 2.9E-05 38.2 4.6 34 56-92 207-240 (428)
242 2j41_A Guanylate kinase; GMP, 85.9 0.47 1.6E-05 33.9 2.7 16 59-74 10-25 (207)
243 1ihu_A Arsenical pump-driving 85.8 0.91 3.1E-05 38.6 4.9 30 59-89 12-42 (589)
244 4dzz_A Plasmid partitioning pr 85.7 0.9 3.1E-05 32.4 4.2 30 60-90 7-37 (206)
245 2zan_A Vacuolar protein sortin 85.6 0.69 2.4E-05 38.3 3.9 19 56-74 168-186 (444)
246 2qor_A Guanylate kinase; phosp 85.5 0.57 2E-05 34.0 3.1 19 58-76 15-33 (204)
247 3of5_A Dethiobiotin synthetase 85.5 1.2 4.2E-05 33.6 5.0 31 61-91 11-41 (228)
248 1njg_A DNA polymerase III subu 85.5 0.63 2.1E-05 33.1 3.2 19 58-76 48-66 (250)
249 3eph_A TRNA isopentenyltransfe 85.5 0.46 1.6E-05 39.8 2.8 16 59-74 6-21 (409)
250 1hyq_A MIND, cell division inh 85.5 1.2 4.1E-05 33.3 4.9 30 60-90 8-38 (263)
251 2pbr_A DTMP kinase, thymidylat 85.5 1.3 4.4E-05 31.1 4.9 30 59-88 4-33 (195)
252 1np6_A Molybdopterin-guanine d 85.2 1.3 4.4E-05 32.2 4.9 29 58-86 9-37 (174)
253 1qvr_A CLPB protein; coiled co 85.2 0.56 1.9E-05 41.9 3.4 33 57-89 590-622 (854)
254 3a4m_A L-seryl-tRNA(SEC) kinas 85.1 1.2 4.2E-05 33.8 4.9 31 58-89 7-38 (260)
255 1kag_A SKI, shikimate kinase I 84.8 0.72 2.5E-05 32.1 3.2 17 57-73 6-22 (173)
256 4gp7_A Metallophosphoesterase; 84.8 0.43 1.5E-05 34.0 2.0 15 59-73 13-27 (171)
257 3fgn_A Dethiobiotin synthetase 84.8 1.3 4.3E-05 34.3 4.9 32 60-91 32-63 (251)
258 1sxj_A Activator 1 95 kDa subu 84.8 0.76 2.6E-05 38.7 3.8 33 56-91 78-110 (516)
259 1zp6_A Hypothetical protein AT 84.7 0.51 1.8E-05 33.4 2.4 17 58-74 12-28 (191)
260 3iij_A Coilin-interacting nucl 84.6 0.73 2.5E-05 32.5 3.2 19 56-74 12-30 (180)
261 2qmh_A HPR kinase/phosphorylas 84.6 0.54 1.9E-05 35.9 2.6 17 58-74 37-53 (205)
262 1cke_A CK, MSSA, protein (cyti 84.5 0.72 2.5E-05 33.6 3.2 16 58-73 8-23 (227)
263 3ney_A 55 kDa erythrocyte memb 84.5 0.67 2.3E-05 34.7 3.1 19 58-76 22-40 (197)
264 1w36_B RECB, exodeoxyribonucle 84.5 2.6 8.7E-05 39.2 7.5 53 56-108 17-81 (1180)
265 1g8p_A Magnesium-chelatase 38 84.5 0.41 1.4E-05 37.1 1.9 20 56-75 46-65 (350)
266 2f6r_A COA synthase, bifunctio 84.4 0.74 2.5E-05 35.7 3.4 17 58-74 78-94 (281)
267 1ixz_A ATP-dependent metallopr 84.3 0.68 2.3E-05 34.6 3.1 18 57-74 51-68 (254)
268 3zq6_A Putative arsenical pump 84.2 1.2 4E-05 35.2 4.6 30 60-90 19-49 (324)
269 2pez_A Bifunctional 3'-phospho 84.2 1.6 5.4E-05 30.7 4.9 16 59-74 9-24 (179)
270 3c8u_A Fructokinase; YP_612366 84.2 1.5 5E-05 31.9 4.8 15 59-73 26-40 (208)
271 3kta_A Chromosome segregation 84.1 0.61 2.1E-05 32.9 2.6 16 58-73 29-44 (182)
272 1z5z_A Helicase of the SNF2/RA 84.1 2.7 9.3E-05 32.4 6.5 56 63-118 92-148 (271)
273 3fb4_A Adenylate kinase; psych 84.0 0.72 2.5E-05 33.4 3.0 18 58-75 3-20 (216)
274 1kht_A Adenylate kinase; phosp 83.9 0.83 2.9E-05 32.0 3.2 17 58-74 6-22 (192)
275 2bdt_A BH3686; alpha-beta prot 83.8 0.67 2.3E-05 33.0 2.7 17 59-75 6-22 (189)
276 2ph1_A Nucleotide-binding prot 83.8 1.3 4.6E-05 33.4 4.6 29 60-89 24-53 (262)
277 2j37_W Signal recognition part 83.8 1.3 4.6E-05 37.7 5.0 35 57-91 103-137 (504)
278 1wp9_A ATP-dependent RNA helic 83.7 4.6 0.00016 31.6 7.9 67 64-130 340-427 (494)
279 3q9l_A Septum site-determining 83.7 1.4 4.7E-05 32.6 4.5 29 60-89 8-37 (260)
280 2woo_A ATPase GET3; tail-ancho 83.5 1.3 4.4E-05 35.1 4.6 30 59-89 23-53 (329)
281 1odf_A YGR205W, hypothetical 3 83.5 0.83 2.8E-05 35.9 3.4 15 59-73 35-49 (290)
282 2c9o_A RUVB-like 1; hexameric 83.5 0.72 2.5E-05 38.1 3.1 34 56-90 64-97 (456)
283 2o0j_A Terminase, DNA packagin 83.5 2.4 8.4E-05 34.8 6.3 52 56-107 179-232 (385)
284 4b4t_H 26S protease regulatory 83.4 1.1 3.9E-05 38.0 4.4 33 56-91 244-276 (467)
285 3asz_A Uridine kinase; cytidin 83.3 0.62 2.1E-05 33.7 2.4 15 59-73 10-24 (211)
286 3dl0_A Adenylate kinase; phosp 83.3 0.74 2.5E-05 33.5 2.8 18 58-75 3-20 (216)
287 2yhs_A FTSY, cell division pro 83.3 1.4 4.7E-05 37.8 4.9 31 59-89 297-327 (503)
288 3qxc_A Dethiobiotin synthetase 83.3 1.7 5.8E-05 33.4 5.0 32 60-91 27-58 (242)
289 2gza_A Type IV secretion syste 83.3 0.62 2.1E-05 37.6 2.6 18 56-73 176-193 (361)
290 1y63_A LMAJ004144AAA protein; 83.3 0.79 2.7E-05 32.8 2.9 18 57-74 12-29 (184)
291 3t61_A Gluconokinase; PSI-biol 83.2 0.83 2.8E-05 32.9 3.1 17 58-74 21-37 (202)
292 1tf7_A KAIC; homohexamer, hexa 83.2 1.2 4.1E-05 37.5 4.4 34 58-91 42-76 (525)
293 1w5s_A Origin recognition comp 83.1 2.1 7.2E-05 33.7 5.6 34 57-90 52-93 (412)
294 1qvr_A CLPB protein; coiled co 82.9 1.3 4.6E-05 39.5 4.8 23 56-78 192-214 (854)
295 3qf7_A RAD50; ABC-ATPase, ATPa 82.7 0.76 2.6E-05 37.1 2.9 16 58-73 26-41 (365)
296 3ug7_A Arsenical pump-driving 82.6 1.6 5.5E-05 34.9 4.8 30 60-90 31-61 (349)
297 3auy_A DNA double-strand break 82.6 0.52 1.8E-05 37.9 1.9 16 58-73 28-43 (371)
298 1in4_A RUVB, holliday junction 82.5 0.97 3.3E-05 35.6 3.4 19 56-74 52-70 (334)
299 3pxg_A Negative regulator of g 82.4 0.88 3E-05 37.9 3.3 20 56-75 202-221 (468)
300 1tev_A UMP-CMP kinase; ploop, 82.3 0.97 3.3E-05 31.7 3.1 17 58-74 6-22 (196)
301 2ius_A DNA translocase FTSK; n 82.2 1.4 4.8E-05 37.7 4.5 25 56-80 168-192 (512)
302 3p32_A Probable GTPase RV1496/ 82.2 1.6 5.5E-05 34.8 4.6 32 58-89 82-113 (355)
303 1via_A Shikimate kinase; struc 82.2 1 3.5E-05 31.6 3.1 18 57-74 6-23 (175)
304 1yrb_A ATP(GTP)binding protein 82.1 1.5 5E-05 32.6 4.1 31 59-90 18-48 (262)
305 1z6g_A Guanylate kinase; struc 82.1 0.82 2.8E-05 33.9 2.7 17 58-74 26-42 (218)
306 1gtv_A TMK, thymidylate kinase 82.0 0.51 1.7E-05 34.0 1.5 18 59-76 4-21 (214)
307 1m7g_A Adenylylsulfate kinase; 82.0 1.9 6.5E-05 31.3 4.7 31 59-89 29-60 (211)
308 3kjh_A CO dehydrogenase/acetyl 82.0 1 3.5E-05 32.8 3.2 30 59-89 4-34 (254)
309 2i4i_A ATP-dependent RNA helic 82.0 1.8 6.3E-05 34.0 4.9 49 82-130 275-334 (417)
310 3lnc_A Guanylate kinase, GMP k 81.9 0.51 1.7E-05 34.9 1.5 16 59-74 31-46 (231)
311 2eyq_A TRCF, transcription-rep 81.9 1.1 3.9E-05 41.6 4.1 57 74-130 803-872 (1151)
312 1knq_A Gluconate kinase; ALFA/ 81.9 1 3.5E-05 31.5 3.1 17 58-74 11-27 (175)
313 2bwj_A Adenylate kinase 5; pho 81.8 0.92 3.1E-05 32.1 2.8 18 58-75 15-32 (199)
314 3cm0_A Adenylate kinase; ATP-b 81.7 1.1 3.6E-05 31.6 3.1 18 58-75 7-24 (186)
315 1qf9_A UMP/CMP kinase, protein 81.7 0.94 3.2E-05 31.7 2.8 18 58-75 9-26 (194)
316 4b4t_I 26S protease regulatory 81.6 1.7 5.8E-05 36.7 4.7 33 56-91 217-249 (437)
317 1gvn_B Zeta; postsegregational 81.5 0.95 3.3E-05 35.2 3.0 18 58-75 36-53 (287)
318 3hu3_A Transitional endoplasmi 81.5 1.1 3.7E-05 37.9 3.5 20 56-75 239-258 (489)
319 4eun_A Thermoresistant glucoki 81.5 0.92 3.1E-05 32.8 2.7 17 58-74 32-48 (200)
320 2v9p_A Replication protein E1; 81.5 1 3.5E-05 35.9 3.2 17 58-74 129-145 (305)
321 1yks_A Genome polyprotein [con 81.5 3.1 0.0001 34.2 6.2 50 81-130 175-231 (440)
322 2iyv_A Shikimate kinase, SK; t 81.3 1.1 3.8E-05 31.6 3.1 17 58-74 5-21 (184)
323 2c95_A Adenylate kinase 1; tra 81.2 0.99 3.4E-05 31.9 2.8 17 58-74 12-28 (196)
324 1iy2_A ATP-dependent metallopr 81.2 1 3.6E-05 34.2 3.1 17 57-73 75-91 (278)
325 1e6c_A Shikimate kinase; phosp 81.0 1.2 4E-05 30.9 3.1 17 58-74 5-21 (173)
326 1znw_A Guanylate kinase, GMP k 80.9 0.98 3.3E-05 32.9 2.7 15 59-73 24-38 (207)
327 2rhm_A Putative kinase; P-loop 80.8 1 3.6E-05 31.7 2.8 17 58-74 8-24 (193)
328 1sxj_D Activator 1 41 kDa subu 80.8 1.2 4.2E-05 34.3 3.4 37 56-92 59-98 (353)
329 2bbw_A Adenylate kinase 4, AK4 80.7 0.78 2.7E-05 34.3 2.1 18 57-74 29-46 (246)
330 1nij_A Hypothetical protein YJ 80.6 0.95 3.3E-05 35.7 2.7 33 58-92 7-39 (318)
331 1jjv_A Dephospho-COA kinase; P 80.3 1.1 3.6E-05 32.3 2.7 16 59-74 6-21 (206)
332 1c4o_A DNA nucleotide excision 80.2 8.5 0.00029 33.5 8.9 64 65-129 421-496 (664)
333 1zd8_A GTP:AMP phosphotransfer 80.1 1.1 3.7E-05 33.0 2.8 17 58-74 10-26 (227)
334 2r44_A Uncharacterized protein 80.1 0.9 3.1E-05 35.3 2.4 19 56-74 47-65 (331)
335 2chq_A Replication factor C sm 80.1 1.3 4.4E-05 33.5 3.2 21 57-77 40-60 (319)
336 1cp2_A CP2, nitrogenase iron p 80.0 2.1 7.1E-05 32.0 4.4 29 60-89 6-35 (269)
337 1zuh_A Shikimate kinase; alpha 80.0 1.3 4.3E-05 30.8 3.0 20 56-75 8-27 (168)
338 1tue_A Replication protein E1; 79.9 0.97 3.3E-05 34.6 2.5 23 57-80 60-82 (212)
339 2if2_A Dephospho-COA kinase; a 79.8 1 3.4E-05 32.4 2.4 17 58-74 4-20 (204)
340 3pvs_A Replication-associated 79.8 1.1 3.7E-05 37.4 2.9 19 57-75 52-70 (447)
341 1uf9_A TT1252 protein; P-loop, 79.8 1 3.5E-05 32.0 2.4 17 58-74 11-27 (203)
342 2pt7_A CAG-ALFA; ATPase, prote 79.8 0.76 2.6E-05 36.7 1.9 17 56-72 172-188 (330)
343 2qt1_A Nicotinamide riboside k 79.7 1.2 4.1E-05 32.1 2.8 17 58-74 24-40 (207)
344 3i5x_A ATP-dependent RNA helic 79.7 5.1 0.00018 33.2 7.1 48 83-130 339-400 (563)
345 3i32_A Heat resistant RNA depe 79.7 4.5 0.00015 31.8 6.4 49 82-130 27-86 (300)
346 1nn5_A Similar to deoxythymidy 79.7 2.5 8.6E-05 30.2 4.6 19 58-76 12-30 (215)
347 1ukz_A Uridylate kinase; trans 79.5 1.4 4.6E-05 31.6 3.1 16 58-73 18-33 (203)
348 2jaq_A Deoxyguanosine kinase; 79.5 1.4 4.7E-05 31.2 3.1 17 59-75 4-20 (205)
349 1r6b_X CLPA protein; AAA+, N-t 79.4 1.7 5.9E-05 37.9 4.2 18 57-74 490-507 (758)
350 2x8a_A Nuclear valosin-contain 79.4 1.1 3.9E-05 34.5 2.7 17 57-73 46-62 (274)
351 2jeo_A Uridine-cytidine kinase 79.3 1.1 3.7E-05 33.6 2.6 16 59-74 29-44 (245)
352 2d7d_A Uvrabc system protein B 79.2 6.1 0.00021 34.4 7.6 55 75-130 437-503 (661)
353 3qkt_A DNA double-strand break 79.2 0.91 3.1E-05 36.0 2.2 15 59-73 27-41 (339)
354 3ea0_A ATPase, para family; al 79.1 2.2 7.4E-05 31.2 4.1 29 60-89 10-40 (245)
355 2cdn_A Adenylate kinase; phosp 79.1 1.4 4.9E-05 31.6 3.1 18 58-75 23-40 (201)
356 1ye8_A Protein THEP1, hypothet 79.1 1.1 3.8E-05 32.4 2.5 16 58-73 3-18 (178)
357 1hv8_A Putative ATP-dependent 79.0 4 0.00014 31.1 5.8 49 82-130 237-296 (367)
358 1sxj_C Activator 1 40 kDa subu 79.0 1.4 4.8E-05 34.5 3.2 20 57-76 48-67 (340)
359 1iqp_A RFCS; clamp loader, ext 78.8 1.3 4.5E-05 33.6 3.0 21 57-77 48-68 (327)
360 2afh_E Nitrogenase iron protei 78.8 2.5 8.7E-05 32.1 4.6 29 60-89 7-36 (289)
361 2xj4_A MIPZ; replication, cell 78.6 2.2 7.5E-05 32.7 4.2 28 60-88 10-38 (286)
362 3qks_A DNA double-strand break 78.5 1.4 4.7E-05 32.4 2.9 16 58-73 26-41 (203)
363 2pt5_A Shikimate kinase, SK; a 78.5 1.6 5.5E-05 30.1 3.1 18 58-75 3-20 (168)
364 1s96_A Guanylate kinase, GMP k 78.4 1.2 4.1E-05 33.4 2.5 16 59-74 20-35 (219)
365 3tqc_A Pantothenate kinase; bi 78.3 1.3 4.5E-05 35.5 2.9 14 60-73 97-110 (321)
366 2plr_A DTMP kinase, probable t 78.2 1.6 5.4E-05 31.1 3.1 18 58-75 7-24 (213)
367 1sq5_A Pantothenate kinase; P- 78.1 1.9 6.5E-05 33.7 3.7 14 60-73 85-98 (308)
368 1e4v_A Adenylate kinase; trans 77.9 1.4 4.7E-05 32.1 2.7 18 58-75 3-20 (214)
369 2iut_A DNA translocase FTSK; n 77.8 2.1 7.3E-05 37.2 4.3 26 56-81 215-240 (574)
370 3k9g_A PF-32 protein; ssgcid, 77.8 1.7 5.8E-05 32.6 3.2 28 60-89 33-61 (267)
371 1a7j_A Phosphoribulokinase; tr 77.7 1.4 4.8E-05 34.4 2.8 16 59-74 9-24 (290)
372 3fht_A ATP-dependent RNA helic 77.6 4.8 0.00017 31.3 6.0 49 82-130 265-324 (412)
373 4e22_A Cytidylate kinase; P-lo 77.4 1.4 4.8E-05 33.3 2.7 16 58-73 30-45 (252)
374 3cio_A ETK, tyrosine-protein k 77.3 3.3 0.00011 32.3 4.9 29 60-89 109-139 (299)
375 1zak_A Adenylate kinase; ATP:A 77.1 1.6 5.6E-05 31.8 2.9 18 57-74 7-24 (222)
376 3bfv_A CAPA1, CAPB2, membrane 77.0 3 0.0001 32.1 4.5 29 60-89 87-117 (271)
377 2wwf_A Thymidilate kinase, put 76.9 3.4 0.00012 29.4 4.6 19 58-76 13-31 (212)
378 1wcv_1 SOJ, segregation protei 76.8 1.9 6.6E-05 32.3 3.3 28 61-89 13-41 (257)
379 1sxj_B Activator 1 37 kDa subu 76.7 2 6.8E-05 32.5 3.4 22 57-78 44-65 (323)
380 3end_A Light-independent proto 76.5 3.6 0.00012 31.6 4.9 29 60-89 46-75 (307)
381 3cwq_A Para family chromosome 76.5 3.3 0.00011 30.2 4.5 28 60-89 6-34 (209)
382 3sqw_A ATP-dependent RNA helic 76.4 7.2 0.00025 32.7 7.1 48 83-130 288-349 (579)
383 1g41_A Heat shock protein HSLU 76.3 1.8 6E-05 36.5 3.2 18 56-73 51-68 (444)
384 2oca_A DAR protein, ATP-depend 76.3 8.1 0.00028 31.5 7.2 53 82-134 346-409 (510)
385 3tlx_A Adenylate kinase 2; str 76.1 2 6.8E-05 32.3 3.2 19 58-76 32-50 (243)
386 3iqw_A Tail-anchored protein t 76.1 2.6 8.8E-05 33.8 4.0 31 59-90 20-51 (334)
387 1aky_A Adenylate kinase; ATP:A 76.0 1.9 6.6E-05 31.4 3.1 17 58-74 7-23 (220)
388 3pxi_A Negative regulator of g 75.9 1.5 5.3E-05 38.4 2.9 20 56-75 202-221 (758)
389 2v54_A DTMP kinase, thymidylat 75.6 1.6 5.6E-05 31.0 2.5 18 58-75 7-24 (204)
390 2ce7_A Cell division protein F 75.6 1.8 6.2E-05 36.5 3.1 20 56-75 50-69 (476)
391 1uj2_A Uridine-cytidine kinase 75.3 2 6.9E-05 32.2 3.1 16 59-74 26-41 (252)
392 2grj_A Dephospho-COA kinase; T 75.1 2 6.8E-05 31.6 2.9 19 58-76 15-33 (192)
393 3ake_A Cytidylate kinase; CMP 75.0 2.2 7.4E-05 30.3 3.1 15 59-73 6-20 (208)
394 2www_A Methylmalonic aciduria 74.9 4.2 0.00014 32.5 5.0 17 58-74 77-93 (349)
395 1vht_A Dephospho-COA kinase; s 74.7 1.4 4.9E-05 32.0 2.0 16 59-74 8-23 (218)
396 4edh_A DTMP kinase, thymidylat 74.7 4.1 0.00014 30.3 4.6 30 59-89 10-40 (213)
397 1jr3_A DNA polymerase III subu 74.6 2.2 7.6E-05 33.1 3.3 18 58-75 41-58 (373)
398 2oze_A ORF delta'; para, walke 74.6 4.4 0.00015 30.8 4.9 27 62-89 44-71 (298)
399 2xb4_A Adenylate kinase; ATP-b 74.4 2.2 7.6E-05 31.4 3.1 17 59-75 4-20 (223)
400 1ak2_A Adenylate kinase isoenz 74.4 2 6.9E-05 31.8 2.8 19 57-75 18-36 (233)
401 1sxj_E Activator 1 40 kDa subu 74.3 1.5 5.2E-05 34.0 2.2 17 58-74 39-55 (354)
402 3nbx_X ATPase RAVA; AAA+ ATPas 74.3 1.3 4.4E-05 37.7 1.9 18 56-73 42-59 (500)
403 3pey_A ATP-dependent RNA helic 74.3 3.9 0.00013 31.5 4.6 49 82-130 242-301 (395)
404 2p5t_B PEZT; postsegregational 74.1 1.6 5.6E-05 32.8 2.3 17 58-74 35-51 (253)
405 2f1r_A Molybdopterin-guanine d 74.0 2.3 7.9E-05 30.7 3.0 18 59-76 6-23 (171)
406 3la6_A Tyrosine-protein kinase 73.9 4.1 0.00014 31.7 4.6 29 60-89 98-127 (286)
407 1xti_A Probable ATP-dependent 73.9 6.9 0.00023 30.3 5.9 49 82-130 249-308 (391)
408 2v6i_A RNA helicase; membrane, 73.9 3.6 0.00012 33.6 4.4 49 82-130 170-225 (431)
409 2qm8_A GTPase/ATPase; G protei 73.7 4.2 0.00014 32.3 4.7 31 59-89 59-89 (337)
410 3u61_B DNA polymerase accessor 73.7 2.8 9.6E-05 32.2 3.6 31 59-92 52-82 (324)
411 4akg_A Glutathione S-transfera 73.7 2.4 8.1E-05 43.1 3.8 41 57-97 925-967 (2695)
412 2z83_A Helicase/nucleoside tri 73.5 8.7 0.0003 31.5 6.8 49 82-130 189-244 (459)
413 2woj_A ATPase GET3; tail-ancho 73.2 3.4 0.00012 33.1 4.1 31 60-90 23-55 (354)
414 3tif_A Uncharacterized ABC tra 73.0 1.6 5.6E-05 32.9 2.0 14 59-72 35-48 (235)
415 3r20_A Cytidylate kinase; stru 72.8 2.7 9.2E-05 32.1 3.2 16 58-73 12-27 (233)
416 1ltq_A Polynucleotide kinase; 72.5 1.7 5.7E-05 33.2 2.0 17 58-74 5-21 (301)
417 2db3_A ATP-dependent RNA helic 72.5 7.1 0.00024 31.6 5.9 48 83-130 300-358 (434)
418 3fkq_A NTRC-like two-domain pr 72.5 3.9 0.00013 32.7 4.3 30 60-90 149-179 (373)
419 2vli_A Antibiotic resistance p 72.5 1.7 5.7E-05 30.4 1.9 17 58-74 8-24 (183)
420 1oyw_A RECQ helicase, ATP-depe 72.3 7.5 0.00026 32.6 6.2 49 82-130 235-294 (523)
421 3io3_A DEHA2D07832P; chaperone 72.3 4.1 0.00014 32.8 4.4 31 60-90 23-55 (348)
422 2fna_A Conserved hypothetical 72.1 4.2 0.00014 31.0 4.2 30 58-90 33-62 (357)
423 3igf_A ALL4481 protein; two-do 72.1 2.6 8.9E-05 34.5 3.2 32 59-90 6-37 (374)
424 2p67_A LAO/AO transport system 72.1 4.6 0.00016 32.0 4.6 16 58-73 59-74 (341)
425 1r6b_X CLPA protein; AAA+, N-t 71.8 2.4 8.3E-05 37.0 3.1 21 56-76 208-228 (758)
426 1ihu_A Arsenical pump-driving 71.8 4.7 0.00016 34.2 4.9 30 59-89 331-361 (589)
427 3aez_A Pantothenate kinase; tr 71.4 2.2 7.7E-05 33.7 2.6 14 60-73 95-108 (312)
428 3sr0_A Adenylate kinase; phosp 70.9 3.2 0.00011 30.8 3.2 18 59-76 4-21 (206)
429 3be4_A Adenylate kinase; malar 70.8 2.9 0.0001 30.5 2.9 18 58-75 8-25 (217)
430 3m6a_A ATP-dependent protease 70.7 2.8 9.4E-05 35.6 3.1 17 57-73 110-126 (543)
431 1e69_A Chromosome segregation 70.6 1.6 5.3E-05 34.3 1.5 16 58-73 27-42 (322)
432 2va8_A SSO2462, SKI2-type heli 70.3 7.8 0.00027 33.4 5.9 31 76-106 245-275 (715)
433 3o8b_A HCV NS3 protease/helica 70.1 6 0.0002 34.9 5.2 50 82-131 395-448 (666)
434 3cf2_A TER ATPase, transitiona 70.1 3.3 0.00011 37.4 3.6 29 45-73 227-256 (806)
435 3cf2_A TER ATPase, transitiona 69.7 3.9 0.00013 36.9 4.0 19 56-74 512-530 (806)
436 2j0s_A ATP-dependent RNA helic 69.4 8.4 0.00029 30.1 5.6 49 82-130 275-334 (410)
437 3zvl_A Bifunctional polynucleo 68.9 3.8 0.00013 33.5 3.5 16 58-73 261-276 (416)
438 1s2m_A Putative ATP-dependent 68.9 6.8 0.00023 30.5 4.9 49 82-130 257-316 (400)
439 3gfo_A Cobalt import ATP-bindi 68.5 2.3 7.9E-05 33.1 2.0 15 59-73 38-52 (275)
440 2cbz_A Multidrug resistance-as 68.5 2.3 8E-05 32.1 2.0 14 59-72 35-48 (237)
441 3nwj_A ATSK2; P loop, shikimat 68.1 4.2 0.00014 31.2 3.4 19 56-74 49-67 (250)
442 1htw_A HI0065; nucleotide-bind 68.1 3.4 0.00012 29.4 2.7 15 59-73 37-51 (158)
443 2dhr_A FTSH; AAA+ protein, hex 68.1 3.2 0.00011 35.2 3.0 19 56-74 65-83 (499)
444 3v9p_A DTMP kinase, thymidylat 67.7 5.8 0.0002 30.0 4.1 31 59-89 29-63 (227)
445 2zj8_A DNA helicase, putative 67.6 8.7 0.0003 33.2 5.7 30 77-106 231-260 (720)
446 4g1u_C Hemin import ATP-bindin 67.5 2.5 8.5E-05 32.6 2.0 14 59-72 41-54 (266)
447 4eaq_A DTMP kinase, thymidylat 67.5 5.7 0.0002 29.6 4.0 18 59-76 30-47 (229)
448 2h92_A Cytidylate kinase; ross 67.5 4 0.00014 29.4 3.1 16 58-73 6-21 (219)
449 3b85_A Phosphate starvation-in 67.5 2.7 9.1E-05 31.3 2.1 15 59-73 26-40 (208)
450 3umf_A Adenylate kinase; rossm 67.0 4.3 0.00015 30.6 3.2 16 59-74 33-48 (217)
451 3f9v_A Minichromosome maintena 66.9 2.2 7.7E-05 36.7 1.8 18 57-74 329-346 (595)
452 4akg_A Glutathione S-transfera 66.8 2.9 9.9E-05 42.5 2.8 20 56-75 1268-1287(2695)
453 3ez2_A Plasmid partition prote 66.8 5.7 0.0002 31.8 4.1 30 60-89 114-149 (398)
454 3hjn_A DTMP kinase, thymidylat 66.8 8.8 0.0003 28.0 4.9 31 59-89 4-34 (197)
455 2v1x_A ATP-dependent DNA helic 66.6 10 0.00035 32.5 5.9 49 82-130 266-325 (591)
456 1mv5_A LMRA, multidrug resista 66.6 2.7 9.2E-05 31.7 2.0 15 59-73 32-46 (243)
457 3lv8_A DTMP kinase, thymidylat 66.5 7.6 0.00026 29.5 4.6 31 59-89 31-62 (236)
458 2i3b_A HCR-ntpase, human cance 66.4 3.7 0.00013 30.0 2.7 16 58-73 4-19 (189)
459 2onk_A Molybdate/tungstate ABC 66.2 3.7 0.00013 31.2 2.7 15 59-73 28-42 (240)
460 1ypw_A Transitional endoplasmi 66.2 2.8 9.4E-05 37.5 2.3 19 56-74 239-257 (806)
461 2ff7_A Alpha-hemolysin translo 66.2 2.8 9.5E-05 31.9 2.0 16 58-73 38-53 (247)
462 2pze_A Cystic fibrosis transme 66.1 2.8 9.6E-05 31.4 2.0 14 59-72 38-51 (229)
463 3ice_A Transcription terminati 65.8 2.6 9E-05 35.4 1.9 45 56-105 175-221 (422)
464 2pcj_A ABC transporter, lipopr 65.8 2.6 8.8E-05 31.5 1.7 14 59-72 34-47 (224)
465 1ji0_A ABC transporter; ATP bi 65.5 2.9 0.0001 31.6 2.0 14 59-72 36-49 (240)
466 3pg5_A Uncharacterized protein 65.4 4.5 0.00015 32.3 3.2 29 60-89 7-36 (361)
467 1g6h_A High-affinity branched- 65.4 2.9 0.0001 31.9 2.0 14 59-72 37-50 (257)
468 2ghi_A Transport protein; mult 65.3 2.9 0.0001 32.0 2.0 16 58-73 49-64 (260)
469 1b0u_A Histidine permease; ABC 65.2 3 0.0001 32.0 2.0 14 59-72 36-49 (262)
470 2yjt_D ATP-dependent RNA helic 68.7 1.3 4.5E-05 31.2 0.0 48 83-130 30-88 (170)
471 2zu0_C Probable ATP-dependent 65.0 3.9 0.00013 31.4 2.7 16 58-73 49-64 (267)
472 2d2e_A SUFC protein; ABC-ATPas 64.7 4.1 0.00014 30.9 2.7 15 59-73 33-47 (250)
473 2jlq_A Serine protease subunit 64.7 6.8 0.00023 32.1 4.3 49 82-130 187-242 (451)
474 1sgw_A Putative ABC transporte 64.6 3.1 0.00011 31.1 2.0 16 58-73 38-53 (214)
475 1q3t_A Cytidylate kinase; nucl 64.6 4.3 0.00015 30.0 2.8 17 58-74 19-35 (236)
476 3nh6_A ATP-binding cassette SU 64.0 2.4 8.4E-05 33.6 1.4 16 58-73 83-98 (306)
477 4tmk_A Protein (thymidylate ki 63.9 9.3 0.00032 28.4 4.6 30 59-88 7-37 (213)
478 2wv9_A Flavivirin protease NS2 63.7 7 0.00024 34.3 4.3 51 81-131 408-465 (673)
479 3k1j_A LON protease, ATP-depen 63.3 4.3 0.00015 34.7 2.9 19 56-74 61-79 (604)
480 2yz2_A Putative ABC transporte 63.2 3.4 0.00012 31.7 2.0 14 59-72 37-50 (266)
481 2vp4_A Deoxynucleoside kinase; 63.1 3.5 0.00012 30.5 2.0 15 59-73 24-38 (230)
482 1u0j_A DNA replication protein 62.7 5.2 0.00018 31.4 3.1 16 58-73 107-122 (267)
483 3sop_A Neuronal-specific septi 62.6 2.8 9.7E-05 32.3 1.5 16 58-73 5-20 (270)
484 2nq2_C Hypothetical ABC transp 62.6 3.5 0.00012 31.5 2.0 14 59-72 35-48 (253)
485 2olj_A Amino acid ABC transpor 62.5 3.5 0.00012 31.8 2.0 16 58-73 53-68 (263)
486 1vpl_A ABC transporter, ATP-bi 62.4 3.6 0.00012 31.6 2.0 15 59-73 45-59 (256)
487 2ixe_A Antigen peptide transpo 62.3 3.6 0.00012 31.8 2.0 16 58-73 48-63 (271)
488 2wsm_A Hydrogenase expression/ 62.3 7.4 0.00025 27.8 3.7 20 57-76 32-51 (221)
489 2qi9_C Vitamin B12 import ATP- 62.1 3.7 0.00013 31.4 2.0 15 59-73 30-44 (249)
490 2ihy_A ABC transporter, ATP-bi 62.0 3.6 0.00012 32.0 2.0 15 58-72 50-64 (279)
491 1ypw_A Transitional endoplasmi 61.7 4.5 0.00016 36.1 2.8 20 56-75 512-531 (806)
492 1qhl_A Protein (cell division 61.5 1.9 6.5E-05 32.8 0.3 15 59-73 31-45 (227)
493 3ld9_A DTMP kinase, thymidylat 61.1 11 0.00038 28.4 4.6 30 59-88 25-55 (223)
494 1a5t_A Delta prime, HOLB; zinc 61.0 6.2 0.00021 30.9 3.2 21 58-78 27-47 (334)
495 3dmq_A RNA polymerase-associat 60.7 13 0.00045 33.7 5.7 48 82-129 502-563 (968)
496 1lw7_A Transcriptional regulat 60.2 4.7 0.00016 32.0 2.4 17 57-73 172-188 (365)
497 1w1w_A Structural maintenance 60.1 5.5 0.00019 32.3 2.9 16 58-73 29-44 (430)
498 3tqf_A HPR(Ser) kinase; transf 59.8 7.6 0.00026 29.0 3.3 20 58-77 19-38 (181)
499 2whx_A Serine protease/ntpase/ 59.6 11 0.00038 32.5 4.9 50 81-130 353-409 (618)
500 2npi_A Protein CLP1; CLP1-PCF1 59.5 5 0.00017 33.6 2.6 17 57-73 140-156 (460)
No 1
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.77 E-value=7.2e-19 Score=168.04 Aligned_cols=86 Identities=22% Similarity=0.283 Sum_probs=76.4
Q ss_pred CCCCCceEECcCCCchHHHHHHHHHHHHHc-----------CCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCC
Q 042424 53 DETTHGTLTNPVYNGKTAVAEYAIAMAFRD-----------KQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDV 117 (138)
Q Consensus 53 ~~~~~~~l~aPTGsGKTlva~~ai~~~l~~-----------~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~ 117 (138)
..+.|.+++||||||||++|+++|++++.+ +.++||++|+|||++|++++|++.|+ .|+.++||.
T Consensus 93 ~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~ 172 (1724)
T 4f92_B 93 ETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDH 172 (1724)
T ss_dssp TCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTTTCCEEECCSSC
T ss_pred cCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHhhCCCEEEEEECCC
Confidence 345789999999999999999999999853 57899999999999999999999886 789999998
Q ss_pred cCCC----CCCEEEecHHHHHHhhC
Q 042424 118 TLSP----NASCLVMTTEILRGMLY 138 (138)
Q Consensus 118 ~~~~----~~~IiVtTpe~l~~lL~ 138 (138)
..+. +++|+|||||+|++|++
T Consensus 173 ~~~~~~~~~~~IlVtTpEkld~llr 197 (1724)
T 4f92_B 173 QLCKEEISATQIIVCTPEKWDIITR 197 (1724)
T ss_dssp SSCCTTGGGCSEEEECHHHHHHHTT
T ss_pred CCCccccCCCCEEEECHHHHHHHHc
Confidence 7654 68999999999998873
No 2
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.73 E-value=6.8e-18 Score=154.83 Aligned_cols=83 Identities=66% Similarity=0.973 Sum_probs=78.5
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCcCCCCCCEEEecHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLSPNASCLVMTTEILRG 135 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~~~~~~~IiVtTpe~l~~ 135 (138)
.+.++++|||||||+++++++..++.+|.+++|++|+++|++|++++|++.|+++++++||...+.+++|+|+|||+|.+
T Consensus 102 ~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~~~~~~IvV~Tpe~L~~ 181 (1010)
T 2xgj_A 102 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRS 181 (1010)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEECTTCSEEEEEHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCccCCCCCEEEEcHHHHHH
Confidence 46789999999999999999999998899999999999999999999999899999999999998899999999999998
Q ss_pred hhC
Q 042424 136 MLY 138 (138)
Q Consensus 136 lL~ 138 (138)
+||
T Consensus 182 ~L~ 184 (1010)
T 2xgj_A 182 MLY 184 (1010)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 3
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.69 E-value=6.1e-17 Score=149.69 Aligned_cols=83 Identities=66% Similarity=0.973 Sum_probs=79.1
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCcCCCCCCEEEecHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLSPNASCLVMTTEILRG 135 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~~~~~~~IiVtTpe~l~~ 135 (138)
.+.++++|||||||+++.++++.++..+.+++|++|+++|++|++++|++.|+.|++++|+...+.+++|+|+||++|.+
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~~~~~~~IlV~Tpe~L~~ 279 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRS 279 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCBCCCSCSEEEEEHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccccCCCCCEEEeChHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhC
Q 042424 136 MLY 138 (138)
Q Consensus 136 lL~ 138 (138)
+||
T Consensus 280 ~L~ 282 (1108)
T 3l9o_A 280 MLY 282 (1108)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 4
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.68 E-value=1.5e-17 Score=158.98 Aligned_cols=85 Identities=25% Similarity=0.389 Sum_probs=75.6
Q ss_pred CCCCCceEECcCCCchHHHHHHHHHHHHHc--CCcEEEEechHHHHHHHHHHHHHhcC-----ceEEEecCCcCCC----
Q 042424 53 DETTHGTLTNPVYNGKTAVAEYAIAMAFRD--KQRVIYTSSLKALSNQKYRELHKEFK-----DVGLMTGDVTLSP---- 121 (138)
Q Consensus 53 ~~~~~~~l~aPTGsGKTlva~~ai~~~l~~--~~rviyv~P~kaLv~Q~~~~l~~~f~-----~v~~~tGd~~~~~---- 121 (138)
..+.|.++++|||||||++++++|++++.+ +.++||++|++||++|++++|++.|+ .|+.++||...+.
T Consensus 940 ~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~ 1019 (1724)
T 4f92_B 940 NSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLG 1019 (1724)
T ss_dssp SCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHH
T ss_pred cCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcC
Confidence 455788999999999999999999999864 67999999999999999999998875 6899999876552
Q ss_pred CCCEEEecHHHHHHhh
Q 042424 122 NASCLVMTTEILRGML 137 (138)
Q Consensus 122 ~~~IiVtTpe~l~~lL 137 (138)
+++|+|||||+|++++
T Consensus 1020 ~~~IiV~TPEkld~ll 1035 (1724)
T 4f92_B 1020 KGNIIISTPEKWDILS 1035 (1724)
T ss_dssp HCSEEEECHHHHHHHH
T ss_pred CCCEEEECHHHHHHHH
Confidence 7899999999999876
No 5
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=119.19 Aligned_cols=82 Identities=18% Similarity=0.148 Sum_probs=68.9
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHH-------cCCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCcCC----
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFR-------DKQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVTLS---- 120 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~-------~~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~~~---- 120 (138)
++.++++|||||||+++.+++++.+. .+.++||++|+++|+.|+++++++.+. .++.++|+....
T Consensus 92 ~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 171 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ 171 (262)
T ss_dssp CCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH
Confidence 67889999999999999988887764 378899999999999999999999654 577788876432
Q ss_pred ---CCCCEEEecHHHHHHhh
Q 042424 121 ---PNASCLVMTTEILRGML 137 (138)
Q Consensus 121 ---~~~~IiVtTpe~l~~lL 137 (138)
.+.+|+|+||++|..++
T Consensus 172 ~~~~~~~Iiv~Tp~~l~~~~ 191 (262)
T 3ly5_A 172 KLGNGINIIVATPGRLLDHM 191 (262)
T ss_dssp HHHHCCSEEEECHHHHHHHH
T ss_pred HhcCCCCEEEEcHHHHHHHH
Confidence 26899999999998754
No 6
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.61 E-value=3.6e-15 Score=113.14 Aligned_cols=83 Identities=11% Similarity=0.006 Sum_probs=64.7
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHH---------cCCcEEEEechHHHHHHHHHHHHHhcC---ceEEEecCCcCCC-
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFR---------DKQRVIYTSSLKALSNQKYRELHKEFK---DVGLMTGDVTLSP- 121 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~---------~~~rviyv~P~kaLv~Q~~~~l~~~f~---~v~~~tGd~~~~~- 121 (138)
.++.++++|||+|||++++++++..+. .+.+++|++|+++|++|+++++++... .+..+.|+...+.
T Consensus 57 ~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQ 136 (228)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------C
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHH
Confidence 467889999999999999988777653 467899999999999999999998432 5666666654432
Q ss_pred ------CCCEEEecHHHHHHhh
Q 042424 122 ------NASCLVMTTEILRGML 137 (138)
Q Consensus 122 ------~~~IiVtTpe~l~~lL 137 (138)
+.+|+|+||++|.+++
T Consensus 137 ~~~~~~~~~iiv~Tp~~l~~~~ 158 (228)
T 3iuy_A 137 IEDISKGVDIIIATPGRLNDLQ 158 (228)
T ss_dssp HHHHHSCCSEEEECHHHHHHHH
T ss_pred HHHhcCCCCEEEECHHHHHHHH
Confidence 5799999999998764
No 7
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.60 E-value=2.9e-15 Score=115.17 Aligned_cols=83 Identities=12% Similarity=0.055 Sum_probs=67.9
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHc--------CCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCcCCC-
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRD--------KQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVTLSP- 121 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~--------~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~~~~- 121 (138)
.++.++++|||+|||++++++++..+.. +.++||++|+++|++|+++.+++.+. .+..+.|+...+.
T Consensus 66 g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 145 (242)
T 3fe2_A 66 GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ 145 (242)
T ss_dssp TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHH
T ss_pred CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHH
Confidence 3678899999999999999888877652 67899999999999999999988532 6777777654321
Q ss_pred ------CCCEEEecHHHHHHhh
Q 042424 122 ------NASCLVMTTEILRGML 137 (138)
Q Consensus 122 ------~~~IiVtTpe~l~~lL 137 (138)
+.+|+|+||++|..++
T Consensus 146 ~~~~~~~~~I~v~Tp~~l~~~l 167 (242)
T 3fe2_A 146 IRDLERGVEICIATPGRLIDFL 167 (242)
T ss_dssp HHHHHHCCSEEEECHHHHHHHH
T ss_pred HHHhcCCCCEEEECHHHHHHHH
Confidence 6899999999998765
No 8
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.59 E-value=6.8e-15 Score=112.13 Aligned_cols=83 Identities=25% Similarity=0.207 Sum_probs=67.2
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHH-------cCCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCcCC---
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFR-------DKQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVTLS--- 120 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~-------~~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~~~--- 120 (138)
.++.++++|||+|||+++.+++++.+. .+.+++|++|+++|++|+++++++.+. .++.+.|+...+
T Consensus 62 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 141 (236)
T 2pl3_A 62 GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA 141 (236)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHH
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHH
Confidence 367889999999999999888877653 368899999999999999999998553 577777865432
Q ss_pred ---CCCCEEEecHHHHHHhh
Q 042424 121 ---PNASCLVMTTEILRGML 137 (138)
Q Consensus 121 ---~~~~IiVtTpe~l~~lL 137 (138)
.+.+|+|+||+++..++
T Consensus 142 ~~~~~~~iiv~Tp~~l~~~l 161 (236)
T 2pl3_A 142 ERINNINILVCTPGRLLQHM 161 (236)
T ss_dssp HHHTTCSEEEECHHHHHHHH
T ss_pred HhCCCCCEEEECHHHHHHHH
Confidence 26899999999997654
No 9
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.58 E-value=3e-15 Score=114.75 Aligned_cols=83 Identities=24% Similarity=0.218 Sum_probs=66.4
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHc----CCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCc--------
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRD----KQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVT-------- 118 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~----~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~-------- 118 (138)
.++.++++|||+|||+++++++++.+.. +.+++|++|+++|++|+++++++.+. .+..+.|+..
T Consensus 66 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (245)
T 3dkp_A 66 GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPK 145 (245)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTT
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhh
Confidence 3678899999999999999888887753 56899999999999999999999654 4455544321
Q ss_pred CCCCCCEEEecHHHHHHhh
Q 042424 119 LSPNASCLVMTTEILRGML 137 (138)
Q Consensus 119 ~~~~~~IiVtTpe~l~~lL 137 (138)
...+.+|+|+||+++..++
T Consensus 146 ~~~~~~I~v~Tp~~l~~~l 164 (245)
T 3dkp_A 146 SSKKFDILVTTPNRLIYLL 164 (245)
T ss_dssp SCCCCCEEEECHHHHHHHH
T ss_pred hcCCCCEEEECHHHHHHHH
Confidence 1236799999999998765
No 10
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.57 E-value=1.2e-14 Score=109.60 Aligned_cols=83 Identities=13% Similarity=0.039 Sum_probs=64.8
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHc---CCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCcCCC------
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRD---KQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVTLSP------ 121 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~---~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~~~~------ 121 (138)
.++.++++|||+|||+++.+++++.+.. +.+++|++|+++|++|+++++++.+. .+..+.|+.....
T Consensus 51 ~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 130 (224)
T 1qde_A 51 GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR 130 (224)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCC
Confidence 3678899999999999988888777642 57999999999999999999998543 5677777654321
Q ss_pred CCCEEEecHHHHHHhh
Q 042424 122 NASCLVMTTEILRGML 137 (138)
Q Consensus 122 ~~~IiVtTpe~l~~lL 137 (138)
+++|+|+||+++..++
T Consensus 131 ~~~iiv~Tp~~l~~~~ 146 (224)
T 1qde_A 131 DAQIVVGTPGRVFDNI 146 (224)
T ss_dssp TCSEEEECHHHHHHHH
T ss_pred CCCEEEECHHHHHHHH
Confidence 5899999999987654
No 11
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.57 E-value=6.8e-15 Score=128.95 Aligned_cols=82 Identities=27% Similarity=0.432 Sum_probs=72.3
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCcCCC----CCCEE
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVTLSP----NASCL 126 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~~~~----~~~Ii 126 (138)
..+.++++|||||||+++.+++++.+.++.+++|++|+++|+.|++++|++ |. .++.++|+...+. +.+|+
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~-~~~~g~~v~~~~G~~~~~~~~~~~~~Ii 118 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKK-WEKIGLRIGISTGDYESRDEHLGDCDII 118 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTT-TTTTTCCEEEECSSCBCCSSCSTTCSEE
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHH-HHhcCCEEEEEeCCCCcchhhccCCCEE
Confidence 468889999999999999999998888889999999999999999999954 43 7899999876543 78999
Q ss_pred EecHHHHHHhh
Q 042424 127 VMTTEILRGML 137 (138)
Q Consensus 127 VtTpe~l~~lL 137 (138)
|+|||+|+.++
T Consensus 119 v~Tpe~l~~~l 129 (702)
T 2p6r_A 119 VTTSEKADSLI 129 (702)
T ss_dssp EEEHHHHHHHH
T ss_pred EECHHHHHHHH
Confidence 99999998865
No 12
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.57 E-value=1.3e-14 Score=111.73 Aligned_cols=83 Identities=17% Similarity=0.053 Sum_probs=67.4
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHc------------CCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCc
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRD------------KQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVT 118 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~------------~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~ 118 (138)
.++.++++|||+|||+++++++++.+.. +.++||++|+++|++|+++++++... .+..+.|+..
T Consensus 60 ~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~ 139 (253)
T 1wrb_A 60 HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGAD 139 (253)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSC
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCC
Confidence 3678899999999999999888877643 35899999999999999999988543 5666777654
Q ss_pred CC-------CCCCEEEecHHHHHHhh
Q 042424 119 LS-------PNASCLVMTTEILRGML 137 (138)
Q Consensus 119 ~~-------~~~~IiVtTpe~l~~lL 137 (138)
.+ .+.+|+|+||++|..++
T Consensus 140 ~~~~~~~~~~~~~Ivv~Tp~~l~~~l 165 (253)
T 1wrb_A 140 THSQIREVQMGCHLLVATPGRLVDFI 165 (253)
T ss_dssp SHHHHHHHSSCCSEEEECHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEECHHHHHHHH
Confidence 32 26799999999998764
No 13
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.57 E-value=5.5e-15 Score=135.41 Aligned_cols=84 Identities=55% Similarity=0.885 Sum_probs=77.0
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcC--ceEEEecCCcCCCCCCEEEecHHH
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFK--DVGLMTGDVTLSPNASCLVMTTEI 132 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~--~v~~~tGd~~~~~~~~IiVtTpe~ 132 (138)
..+.++++|||||||+++.+++...+..+.+++|++|+++|++|++++|++.|. .++.++|+...+.+.+|+|+||++
T Consensus 54 g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~~~~~~~IlV~Tpe~ 133 (997)
T 4a4z_A 54 GDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCLIMTTEI 133 (997)
T ss_dssp TCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCEECTTSSEEEEEHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCccCCCCCEEEECHHH
Confidence 367789999999999999999998888899999999999999999999999885 899999999988899999999999
Q ss_pred HHHhhC
Q 042424 133 LRGMLY 138 (138)
Q Consensus 133 l~~lL~ 138 (138)
|.++++
T Consensus 134 L~~~l~ 139 (997)
T 4a4z_A 134 LRSMLY 139 (997)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988763
No 14
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.56 E-value=1.4e-14 Score=115.92 Aligned_cols=82 Identities=13% Similarity=0.034 Sum_probs=66.8
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHc---CCcEEEEechHHHHHHHHHHHHHhcC-----ceEEEecCCcCCC----CC
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRD---KQRVIYTSSLKALSNQKYRELHKEFK-----DVGLMTGDVTLSP----NA 123 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~---~~rviyv~P~kaLv~Q~~~~l~~~f~-----~v~~~tGd~~~~~----~~ 123 (138)
++.++++|||||||+++++++++.+.. +.++||++|+++|+.|+++.+++... .+....|+..... ..
T Consensus 132 ~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (300)
T 3fmo_B 132 QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE 211 (300)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCC
T ss_pred CeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCC
Confidence 678899999999999999888887653 34799999999999999999988542 5666666554332 67
Q ss_pred CEEEecHHHHHHhh
Q 042424 124 SCLVMTTEILRGML 137 (138)
Q Consensus 124 ~IiVtTpe~l~~lL 137 (138)
+|+|+||++|..++
T Consensus 212 ~IlV~TP~~l~~~l 225 (300)
T 3fmo_B 212 QIVIGTPGTVLDWC 225 (300)
T ss_dssp SEEEECHHHHHHHH
T ss_pred CEEEECHHHHHHHH
Confidence 89999999998765
No 15
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.56 E-value=1.3e-14 Score=107.72 Aligned_cols=83 Identities=20% Similarity=0.107 Sum_probs=68.5
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHH------cCCcEEEEechHHHHHHHHHHHHHhcC--ceEEEecCCcCC------
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFR------DKQRVIYTSSLKALSNQKYRELHKEFK--DVGLMTGDVTLS------ 120 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~------~~~rviyv~P~kaLv~Q~~~~l~~~f~--~v~~~tGd~~~~------ 120 (138)
.++.++++|||+|||+++..++.+.+. .+.+++|++|+++|++|+++++++.+. .+..+.|+....
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEAL 117 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHh
Confidence 367789999999999999988887764 367899999999999999999999665 677777765432
Q ss_pred -CCCCEEEecHHHHHHhh
Q 042424 121 -PNASCLVMTTEILRGML 137 (138)
Q Consensus 121 -~~~~IiVtTpe~l~~lL 137 (138)
.+.+|+|+||+++..++
T Consensus 118 ~~~~~i~v~T~~~l~~~~ 135 (207)
T 2gxq_A 118 LRGADAVVATPGRALDYL 135 (207)
T ss_dssp HHCCSEEEECHHHHHHHH
T ss_pred hCCCCEEEECHHHHHHHH
Confidence 26899999999997754
No 16
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.56 E-value=9.5e-15 Score=108.67 Aligned_cols=83 Identities=12% Similarity=0.040 Sum_probs=67.7
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHc---CCcEEEEechHHHHHHHHHHHHHhcC-----ceEEEecCCcC-------
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRD---KQRVIYTSSLKALSNQKYRELHKEFK-----DVGLMTGDVTL------- 119 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~---~~rviyv~P~kaLv~Q~~~~l~~~f~-----~v~~~tGd~~~------- 119 (138)
.++.++++|||+|||+++.++++..+.. +.+++|++|+++|++|+++.+++.+. .+..+.|+...
T Consensus 40 ~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 119 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL 119 (206)
T ss_dssp TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT
T ss_pred CCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhc
Confidence 3678899999999999999888876543 56899999999999999999988552 57777776543
Q ss_pred CCCCCEEEecHHHHHHhh
Q 042424 120 SPNASCLVMTTEILRGML 137 (138)
Q Consensus 120 ~~~~~IiVtTpe~l~~lL 137 (138)
..+.+|+|+||+++..++
T Consensus 120 ~~~~~i~v~T~~~l~~~~ 137 (206)
T 1vec_A 120 DDTVHVVIATPGRILDLI 137 (206)
T ss_dssp TSCCSEEEECHHHHHHHH
T ss_pred CCCCCEEEeCHHHHHHHH
Confidence 236899999999997654
No 17
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.56 E-value=1.1e-14 Score=111.24 Aligned_cols=83 Identities=11% Similarity=0.063 Sum_probs=68.1
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHc---CCcEEEEechHHHHHHHHHHHHHhcC-----ceEEEecCCcCC------
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRD---KQRVIYTSSLKALSNQKYRELHKEFK-----DVGLMTGDVTLS------ 120 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~---~~rviyv~P~kaLv~Q~~~~l~~~f~-----~v~~~tGd~~~~------ 120 (138)
.++.++++|||+|||+++.+++++.+.. +.+++|++|+++|++|+++++++... .++.+.|+...+
T Consensus 61 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 140 (230)
T 2oxc_A 61 GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL 140 (230)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc
Confidence 3678899999999999998888776532 57999999999999999999998542 577888876432
Q ss_pred CCCCEEEecHHHHHHhh
Q 042424 121 PNASCLVMTTEILRGML 137 (138)
Q Consensus 121 ~~~~IiVtTpe~l~~lL 137 (138)
.+.+|+|+||+++..++
T Consensus 141 ~~~~Iiv~Tp~~l~~~~ 157 (230)
T 2oxc_A 141 KKCHIAVGSPGRIKQLI 157 (230)
T ss_dssp TSCSEEEECHHHHHHHH
T ss_pred cCCCEEEECHHHHHHHH
Confidence 26899999999998764
No 18
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.55 E-value=1.9e-14 Score=126.14 Aligned_cols=84 Identities=30% Similarity=0.418 Sum_probs=71.9
Q ss_pred CCCCceEECcCCCchHHHHHHHHHHHHH-cCCcEEEEechHHHHHHHHHHHHHh--cC-ceEEEecCCcCCC----CCCE
Q 042424 54 ETTHGTLTNPVYNGKTAVAEYAIAMAFR-DKQRVIYTSSLKALSNQKYRELHKE--FK-DVGLMTGDVTLSP----NASC 125 (138)
Q Consensus 54 ~~~~~~l~aPTGsGKTlva~~ai~~~l~-~~~rviyv~P~kaLv~Q~~~~l~~~--f~-~v~~~tGd~~~~~----~~~I 125 (138)
...+.++++|||||||+++.+++++.+. ++.+++|++|+++|+.|++++|+.. ++ .|+.++|+...+. +.+|
T Consensus 45 ~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~~~I 124 (715)
T 2va8_A 45 EGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAWLKNYDI 124 (715)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCGGGGGCSE
T ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchhhcCCCCE
Confidence 3578889999999999999988888776 6899999999999999999999532 23 7899999876654 7899
Q ss_pred EEecHHHHHHhh
Q 042424 126 LVMTTEILRGML 137 (138)
Q Consensus 126 iVtTpe~l~~lL 137 (138)
+||||++|+.++
T Consensus 125 iv~Tpe~l~~~~ 136 (715)
T 2va8_A 125 IITTYEKLDSLW 136 (715)
T ss_dssp EEECHHHHHHHH
T ss_pred EEEcHHHHHHHH
Confidence 999999998865
No 19
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.54 E-value=1.1e-14 Score=128.03 Aligned_cols=84 Identities=26% Similarity=0.421 Sum_probs=72.0
Q ss_pred CCCCceEECcCCCchHHHHHHHHHHHHH-cCCcEEEEechHHHHHHHHHHHHHh--cC-ceEEEecCCcCCC----CCCE
Q 042424 54 ETTHGTLTNPVYNGKTAVAEYAIAMAFR-DKQRVIYTSSLKALSNQKYRELHKE--FK-DVGLMTGDVTLSP----NASC 125 (138)
Q Consensus 54 ~~~~~~l~aPTGsGKTlva~~ai~~~l~-~~~rviyv~P~kaLv~Q~~~~l~~~--f~-~v~~~tGd~~~~~----~~~I 125 (138)
...+.++++|||||||+++.+++++.+. ++.+++|++|+++|+.|++++|++. ++ .|+.++||...+. +.+|
T Consensus 38 ~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~~I 117 (720)
T 2zj8_A 38 EGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEWLGKYDI 117 (720)
T ss_dssp GTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGGGGGCSE
T ss_pred CCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccccCCCCE
Confidence 3577889999999999999988887765 6899999999999999999999642 23 7899999876654 7899
Q ss_pred EEecHHHHHHhh
Q 042424 126 LVMTTEILRGML 137 (138)
Q Consensus 126 iVtTpe~l~~lL 137 (138)
+|+||++|+.++
T Consensus 118 iv~Tpe~l~~~~ 129 (720)
T 2zj8_A 118 IIATAEKFDSLL 129 (720)
T ss_dssp EEECHHHHHHHH
T ss_pred EEECHHHHHHHH
Confidence 999999998764
No 20
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.54 E-value=1.9e-14 Score=111.84 Aligned_cols=83 Identities=13% Similarity=0.077 Sum_probs=67.6
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHc---CCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCcCC-------
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRD---KQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVTLS------- 120 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~---~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~~~------- 120 (138)
.++.++++|||+|||+++.+++++.+.. +.+++|++|+++|++|++++|++... .++.+.|+....
T Consensus 80 ~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 159 (249)
T 3ber_A 80 GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA 159 (249)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc
Confidence 3678899999999999999888777653 45799999999999999999988543 677777765432
Q ss_pred CCCCEEEecHHHHHHhh
Q 042424 121 PNASCLVMTTEILRGML 137 (138)
Q Consensus 121 ~~~~IiVtTpe~l~~lL 137 (138)
.+++|+|+||++|..++
T Consensus 160 ~~~~I~v~Tp~~l~~~l 176 (249)
T 3ber_A 160 KKPHIIIATPGRLIDHL 176 (249)
T ss_dssp TCCSEEEECHHHHHHHH
T ss_pred CCCCEEEECHHHHHHHH
Confidence 37899999999997754
No 21
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.54 E-value=9.9e-15 Score=110.28 Aligned_cols=83 Identities=16% Similarity=0.135 Sum_probs=66.6
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHc---CCcEEEEechHHHHHHHHHHHHHhcC--------ceEEEecCCcC----
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRD---KQRVIYTSSLKALSNQKYRELHKEFK--------DVGLMTGDVTL---- 119 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~---~~rviyv~P~kaLv~Q~~~~l~~~f~--------~v~~~tGd~~~---- 119 (138)
.++.++++|||+|||+++.+++++.+.. +.+++|++|+++|++|+++++++... .+..+.|+...
T Consensus 41 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 120 (219)
T 1q0u_A 41 GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL 120 (219)
T ss_dssp TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH
Confidence 3677899999999999999888877653 57899999999999999999988542 45666666532
Q ss_pred ---CCCCCEEEecHHHHHHhh
Q 042424 120 ---SPNASCLVMTTEILRGML 137 (138)
Q Consensus 120 ---~~~~~IiVtTpe~l~~lL 137 (138)
..+.+|+|+||+++..++
T Consensus 121 ~~~~~~~~Iiv~Tp~~l~~~l 141 (219)
T 1q0u_A 121 EKLNVQPHIVIGTPGRINDFI 141 (219)
T ss_dssp CCCSSCCSEEEECHHHHHHHH
T ss_pred HHcCCCCCEEEeCHHHHHHHH
Confidence 126789999999998754
No 22
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.54 E-value=1.7e-14 Score=117.91 Aligned_cols=83 Identities=16% Similarity=0.093 Sum_probs=69.8
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcC---ceEEEecCCcCC-----------
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFK---DVGLMTGDVTLS----------- 120 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~---~v~~~tGd~~~~----------- 120 (138)
.++.++++|||+|||++++.++.+.+..+.+++|++|+++|+.|++++|++... .++.++|+...+
T Consensus 36 ~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~ 115 (414)
T 3oiy_A 36 GKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEE 115 (414)
T ss_dssp TCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhc
Confidence 357889999999999988888777777789999999999999999999999533 788888887541
Q ss_pred CCCCEEEecHHHHHHhh
Q 042424 121 PNASCLVMTTEILRGML 137 (138)
Q Consensus 121 ~~~~IiVtTpe~l~~lL 137 (138)
.+.+|+|+||++|..++
T Consensus 116 ~~~~Iiv~Tp~~l~~~l 132 (414)
T 3oiy_A 116 DDYHILVFSTQFVSKNR 132 (414)
T ss_dssp TCCSEEEEEHHHHHHCH
T ss_pred CCCCEEEECHHHHHHHH
Confidence 14899999999997653
No 23
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.54 E-value=1.8e-14 Score=110.56 Aligned_cols=83 Identities=14% Similarity=0.082 Sum_probs=64.5
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHH---cCCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCcCCC------
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFR---DKQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVTLSP------ 121 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~---~~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~~~~------ 121 (138)
.++.++++|||+|||+++.+++++.+. .+.+++|++|+++|++|+++++++... .+..+.|+.....
T Consensus 67 ~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 146 (237)
T 3bor_A 67 GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQ 146 (237)
T ss_dssp TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC------------
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHh
Confidence 367889999999999999888887764 367999999999999999999998543 4566666544321
Q ss_pred --CCCEEEecHHHHHHhh
Q 042424 122 --NASCLVMTTEILRGML 137 (138)
Q Consensus 122 --~~~IiVtTpe~l~~lL 137 (138)
..+|+|+||+++..++
T Consensus 147 ~~~~~Ilv~Tp~~l~~~l 164 (237)
T 3bor_A 147 AEAPHIVVGTPGRVFDML 164 (237)
T ss_dssp -CCCSEEEECHHHHHHHH
T ss_pred cCCCCEEEECHHHHHHHH
Confidence 3799999999988764
No 24
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.53 E-value=3.1e-14 Score=118.60 Aligned_cols=83 Identities=18% Similarity=0.295 Sum_probs=72.0
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHc-----CCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCcCCC----
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRD-----KQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVTLSP---- 121 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~-----~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~~~~---- 121 (138)
..+.++++|||+|||+++.+++.+.+.. +.++||++|+++|++|++++|++.+. .++.++|+...+.
T Consensus 19 ~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 98 (555)
T 3tbk_A 19 GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQH 98 (555)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHH
Confidence 3678899999999999999999888775 78999999999999999999999753 7888999876543
Q ss_pred ---CCCEEEecHHHHHHhh
Q 042424 122 ---NASCLVMTTEILRGML 137 (138)
Q Consensus 122 ---~~~IiVtTpe~l~~lL 137 (138)
+.+|+|+||++|..++
T Consensus 99 ~~~~~~i~v~T~~~l~~~~ 117 (555)
T 3tbk_A 99 IIEDNDIIILTPQILVNNL 117 (555)
T ss_dssp HHHHCSEEEECHHHHHHHH
T ss_pred HhcCCCEEEECHHHHHHHH
Confidence 5899999999998764
No 25
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.53 E-value=2.7e-14 Score=119.41 Aligned_cols=83 Identities=19% Similarity=0.318 Sum_probs=69.0
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHc-----CCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCcCCC----
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRD-----KQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVTLSP---- 121 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~-----~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~~~~---- 121 (138)
..+.++++|||+|||+++.+++.+.+.. +.++||++|+++|+.|++++|++.+. .++.++|+...+.
T Consensus 22 ~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 101 (556)
T 4a2p_A 22 GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEK 101 (556)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHH
T ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHH
Confidence 3678899999999999999999888775 78999999999999999999999753 6888888875443
Q ss_pred ---CCCEEEecHHHHHHhh
Q 042424 122 ---NASCLVMTTEILRGML 137 (138)
Q Consensus 122 ---~~~IiVtTpe~l~~lL 137 (138)
+.+|+|+||++|..++
T Consensus 102 ~~~~~~i~v~T~~~l~~~~ 120 (556)
T 4a2p_A 102 VIEDSDIIVVTPQILVNSF 120 (556)
T ss_dssp HHHHCSEEEECHHHHHHHH
T ss_pred hhCCCCEEEECHHHHHHHH
Confidence 6899999999998764
No 26
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.53 E-value=2.9e-14 Score=107.43 Aligned_cols=83 Identities=17% Similarity=0.114 Sum_probs=67.7
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHc---CCcEEEEechHHHHHHHHHHHHHhc----C-ceEEEecCCcCC------
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRD---KQRVIYTSSLKALSNQKYRELHKEF----K-DVGLMTGDVTLS------ 120 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~---~~rviyv~P~kaLv~Q~~~~l~~~f----~-~v~~~tGd~~~~------ 120 (138)
.++.++++|||+|||+++++++...+.. +.+++|++|+++|++|+++++++.. + .++.+.|+...+
T Consensus 51 ~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 130 (220)
T 1t6n_A 51 GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 130 (220)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHH
T ss_pred CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHH
Confidence 3678899999999999999888877654 3589999999999999999998854 2 678888876432
Q ss_pred --CCCCEEEecHHHHHHhh
Q 042424 121 --PNASCLVMTTEILRGML 137 (138)
Q Consensus 121 --~~~~IiVtTpe~l~~lL 137 (138)
...+|+|+||+++..++
T Consensus 131 ~~~~~~i~v~T~~~l~~~~ 149 (220)
T 1t6n_A 131 KKNCPHIVVGTPGRILALA 149 (220)
T ss_dssp HHSCCSEEEECHHHHHHHH
T ss_pred hcCCCCEEEeCHHHHHHHH
Confidence 24699999999998754
No 27
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.52 E-value=6.6e-14 Score=111.75 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=66.6
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHH---cCCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCcCC---CCCCE
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFR---DKQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVTLS---PNASC 125 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~---~~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~~~---~~~~I 125 (138)
++.++++|||+|||+++.++++..+. .+.+++|++|+++|++|+++++++... .+....|+.... .+++|
T Consensus 45 ~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 124 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQV 124 (395)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTSCBCCSE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhccCCCCE
Confidence 67789999999999999988887764 367999999999999999999998543 456666654332 27899
Q ss_pred EEecHHHHHHhh
Q 042424 126 LVMTTEILRGML 137 (138)
Q Consensus 126 iVtTpe~l~~lL 137 (138)
+|+||++|..++
T Consensus 125 iv~T~~~l~~~~ 136 (395)
T 3pey_A 125 IVGTPGTVLDLM 136 (395)
T ss_dssp EEECHHHHHHHH
T ss_pred EEEcHHHHHHHH
Confidence 999999998764
No 28
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.49 E-value=1.3e-13 Score=110.98 Aligned_cols=82 Identities=13% Similarity=0.027 Sum_probs=66.3
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHc---CCcEEEEechHHHHHHHHHHHHHhcC-----ceEEEecCCcCC----CCC
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRD---KQRVIYTSSLKALSNQKYRELHKEFK-----DVGLMTGDVTLS----PNA 123 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~---~~rviyv~P~kaLv~Q~~~~l~~~f~-----~v~~~tGd~~~~----~~~ 123 (138)
++.++++|||+|||+++++++++.+.. +.+++|++|+++|++|+++.+++... .++...|+.... ...
T Consensus 65 ~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (412)
T 3fht_A 65 QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE 144 (412)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCC
T ss_pred CeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCC
Confidence 677899999999999999888877654 45899999999999999999888432 566666654432 267
Q ss_pred CEEEecHHHHHHhh
Q 042424 124 SCLVMTTEILRGML 137 (138)
Q Consensus 124 ~IiVtTpe~l~~lL 137 (138)
+|+|+||++|..++
T Consensus 145 ~ivv~T~~~l~~~~ 158 (412)
T 3fht_A 145 QIVIGTPGTVLDWC 158 (412)
T ss_dssp SEEEECHHHHHHHH
T ss_pred CEEEECchHHHHHH
Confidence 99999999998765
No 29
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.49 E-value=6.8e-14 Score=116.36 Aligned_cols=83 Identities=18% Similarity=0.219 Sum_probs=68.0
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHc--------CCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCcC---
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRD--------KQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVTL--- 119 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~--------~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~~--- 119 (138)
.++.++++|||||||+++++++++.+.. +.++||++|+++|+.|+++++++... .++.+.|+...
T Consensus 93 g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 172 (434)
T 2db3_A 93 GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQ 172 (434)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHH
T ss_pred CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHH
Confidence 3678899999999999999888777642 45899999999999999999998543 56777776643
Q ss_pred ----CCCCCEEEecHHHHHHhh
Q 042424 120 ----SPNASCLVMTTEILRGML 137 (138)
Q Consensus 120 ----~~~~~IiVtTpe~l~~lL 137 (138)
..+++|+|+||++|..++
T Consensus 173 ~~~l~~~~~Ivv~Tp~~l~~~l 194 (434)
T 2db3_A 173 NECITRGCHVVIATPGRLLDFV 194 (434)
T ss_dssp HHHHTTCCSEEEECHHHHHHHH
T ss_pred HHHhhcCCCEEEEChHHHHHHH
Confidence 237899999999998764
No 30
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.49 E-value=7.1e-14 Score=113.19 Aligned_cols=83 Identities=19% Similarity=0.116 Sum_probs=67.0
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHc---------------------CCcEEEEechHHHHHHHHHHHHHhcC----c
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRD---------------------KQRVIYTSSLKALSNQKYRELHKEFK----D 109 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~---------------------~~rviyv~P~kaLv~Q~~~~l~~~f~----~ 109 (138)
.++.++++|||+|||+++++++++.+.. +.++||++|+++|++|+++++++... .
T Consensus 52 ~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 131 (417)
T 2i4i_A 52 KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVR 131 (417)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCC
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCce
Confidence 4678899999999999998877766532 15799999999999999999998543 5
Q ss_pred eEEEecCCcC-------CCCCCEEEecHHHHHHhh
Q 042424 110 VGLMTGDVTL-------SPNASCLVMTTEILRGML 137 (138)
Q Consensus 110 v~~~tGd~~~-------~~~~~IiVtTpe~l~~lL 137 (138)
+..+.|+... ..+.+|+|+||++|..++
T Consensus 132 ~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l 166 (417)
T 2i4i_A 132 PCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMM 166 (417)
T ss_dssp EEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHH
Confidence 7777777543 236899999999998764
No 31
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.49 E-value=8.7e-14 Score=103.32 Aligned_cols=83 Identities=25% Similarity=0.259 Sum_probs=64.6
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHc------CCcEEEEechHHHHHH-HHHHHHHhcC---ceEEEecCCcCCC---
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRD------KQRVIYTSSLKALSNQ-KYRELHKEFK---DVGLMTGDVTLSP--- 121 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~------~~rviyv~P~kaLv~Q-~~~~l~~~f~---~v~~~tGd~~~~~--- 121 (138)
..+.++.+|||+|||+++.+++.+.+.. +.+++|++|+++|++| ..+.+.+... .+..++|+.....
T Consensus 48 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 127 (216)
T 3b6e_A 48 GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFP 127 (216)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHH
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHH
Confidence 3678899999999999999887776643 6799999999999999 6666766433 6788888765443
Q ss_pred ----CCCEEEecHHHHHHhh
Q 042424 122 ----NASCLVMTTEILRGML 137 (138)
Q Consensus 122 ----~~~IiVtTpe~l~~lL 137 (138)
+.+|+|+||+.|..++
T Consensus 128 ~~~~~~~i~v~T~~~l~~~~ 147 (216)
T 3b6e_A 128 EVVKSCDIIISTAQILENSL 147 (216)
T ss_dssp HHHHHCSEEEEEHHHHHHHH
T ss_pred hhccCCCEEEECHHHHHHHH
Confidence 4899999999998754
No 32
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.47 E-value=8e-14 Score=118.25 Aligned_cols=82 Identities=15% Similarity=0.101 Sum_probs=65.7
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcC-------CcEEEEechHHHHHHHHHHHHHhcC--------ceEEEecCCcC-
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDK-------QRVIYTSSLKALSNQKYRELHKEFK--------DVGLMTGDVTL- 119 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~-------~rviyv~P~kaLv~Q~~~~l~~~f~--------~v~~~tGd~~~- 119 (138)
++.++++|||+|||+++++++++.+..+ .++||++|+++|+.|++++|++.+. .+..+.|+...
T Consensus 112 ~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 191 (563)
T 3i5x_A 112 HDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFR 191 (563)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHH
T ss_pred CeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHH
Confidence 5677999999999999999888887653 3899999999999999999998432 35555665432
Q ss_pred -------CCCCCEEEecHHHHHHhh
Q 042424 120 -------SPNASCLVMTTEILRGML 137 (138)
Q Consensus 120 -------~~~~~IiVtTpe~l~~lL 137 (138)
..+.+|+|+||++|..++
T Consensus 192 ~~~~~~~~~~~~Iiv~Tp~~l~~~l 216 (563)
T 3i5x_A 192 AAMNKMNKLRPNIVIATPGRLIDVL 216 (563)
T ss_dssp HHHHHHHHHCCSEEEECHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEECcHHHHHHH
Confidence 127899999999998754
No 33
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.47 E-value=2.4e-13 Score=117.76 Aligned_cols=83 Identities=19% Similarity=0.247 Sum_probs=70.8
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHcC-----CcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCcCCC----
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRDK-----QRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVTLSP---- 121 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~~-----~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~~~~---- 121 (138)
..+.++++|||+|||+++.+++.+.+..+ .++|+++|+++|+.|++++|++.+. .++.++|+...+.
T Consensus 28 g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 107 (696)
T 2ykg_A 28 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQ 107 (696)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHH
T ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHH
Confidence 36788999999999999998888777642 7899999999999999999999763 7888888875432
Q ss_pred ---CCCEEEecHHHHHHhh
Q 042424 122 ---NASCLVMTTEILRGML 137 (138)
Q Consensus 122 ---~~~IiVtTpe~l~~lL 137 (138)
+.+|+|+||++|.+++
T Consensus 108 ~~~~~~Iiv~Tp~~L~~~l 126 (696)
T 2ykg_A 108 IVENNDIIILTPQILVNNL 126 (696)
T ss_dssp HHHTCSEEEECHHHHHHHH
T ss_pred hccCCCEEEECHHHHHHHH
Confidence 7899999999998764
No 34
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.47 E-value=1.5e-13 Score=110.97 Aligned_cols=82 Identities=17% Similarity=0.080 Sum_probs=68.0
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHH---cCCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCcC-------CC
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFR---DKQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVTL-------SP 121 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~---~~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~~-------~~ 121 (138)
++.++++|||+|||+++.++++..+. .+.+++|++|+++|++|+++++++.+. .+..++|+... ..
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 138 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNE 138 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTS
T ss_pred CCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcC
Confidence 57789999999999999988887765 356899999999999999999998654 57777777542 24
Q ss_pred CCCEEEecHHHHHHhh
Q 042424 122 NASCLVMTTEILRGML 137 (138)
Q Consensus 122 ~~~IiVtTpe~l~~lL 137 (138)
+.+|+|+||++|..++
T Consensus 139 ~~~Ivv~T~~~l~~~~ 154 (400)
T 1s2m_A 139 TVHILVGTPGRVLDLA 154 (400)
T ss_dssp CCSEEEECHHHHHHHH
T ss_pred CCCEEEEchHHHHHHH
Confidence 7899999999997654
No 35
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.46 E-value=1.3e-13 Score=109.03 Aligned_cols=82 Identities=16% Similarity=0.097 Sum_probs=67.7
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHc--CCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCcCC------CCC
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRD--KQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVTLS------PNA 123 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~--~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~~~------~~~ 123 (138)
.+.++++|||+|||+++..++...+.. +.++++++|+++|++|+++++++.++ .+..+.|+.... .+.
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 124 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNA 124 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTC
T ss_pred CCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCC
Confidence 567799999999999998888776654 78999999999999999999999765 566677765432 178
Q ss_pred CEEEecHHHHHHhh
Q 042424 124 SCLVMTTEILRGML 137 (138)
Q Consensus 124 ~IiVtTpe~l~~lL 137 (138)
+|+|+||++|..++
T Consensus 125 ~iiv~T~~~l~~~~ 138 (367)
T 1hv8_A 125 NIVVGTPGRILDHI 138 (367)
T ss_dssp SEEEECHHHHHHHH
T ss_pred CEEEecHHHHHHHH
Confidence 99999999998754
No 36
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.46 E-value=1.6e-13 Score=114.46 Aligned_cols=82 Identities=13% Similarity=0.034 Sum_probs=65.3
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcC---CcEEEEechHHHHHHHHHHHHHhcC-----ceEEEecCCcCC----CCC
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDK---QRVIYTSSLKALSNQKYRELHKEFK-----DVGLMTGDVTLS----PNA 123 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~---~rviyv~P~kaLv~Q~~~~l~~~f~-----~v~~~tGd~~~~----~~~ 123 (138)
++.++++|||||||+++++++++.+..+ .++||++|+++|+.|+++.+++... .++...|+.... .+.
T Consensus 132 ~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (479)
T 3fmp_B 132 QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE 211 (479)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCC
T ss_pred CcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCC
Confidence 5678999999999999999988776643 3899999999999999988877432 456665554332 267
Q ss_pred CEEEecHHHHHHhh
Q 042424 124 SCLVMTTEILRGML 137 (138)
Q Consensus 124 ~IiVtTpe~l~~lL 137 (138)
+|+|+||++|..++
T Consensus 212 ~Ivv~Tp~~l~~~l 225 (479)
T 3fmp_B 212 QIVIGTPGTVLDWC 225 (479)
T ss_dssp SEEEECHHHHHHHH
T ss_pred CEEEECchHHHHHH
Confidence 89999999998765
No 37
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.46 E-value=2.5e-13 Score=120.83 Aligned_cols=83 Identities=19% Similarity=0.318 Sum_probs=69.8
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHc-----CCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCcCCC----
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRD-----KQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVTLSP---- 121 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~-----~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~~~~---- 121 (138)
.++.++++|||+|||+++.+++.+.+.. +.++||++|+++|+.|++++|++.+. .++.++|+...+.
T Consensus 263 ~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 342 (797)
T 4a2q_A 263 GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEK 342 (797)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHH
Confidence 3678899999999999999999888875 78999999999999999999999763 7888999875543
Q ss_pred ---CCCEEEecHHHHHHhh
Q 042424 122 ---NASCLVMTTEILRGML 137 (138)
Q Consensus 122 ---~~~IiVtTpe~l~~lL 137 (138)
+.+|+|+||++|...+
T Consensus 343 ~~~~~~Ivv~Tp~~l~~~l 361 (797)
T 4a2q_A 343 VIEDSDIIVVTPQILVNSF 361 (797)
T ss_dssp HHHTCSEEEECHHHHHHHH
T ss_pred hhCCCCEEEEchHHHHHHH
Confidence 7899999999998764
No 38
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.46 E-value=2.5e-13 Score=106.46 Aligned_cols=80 Identities=18% Similarity=0.144 Sum_probs=65.5
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCcCC------CCCC
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVTLS------PNAS 124 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~~~------~~~~ 124 (138)
.++.++++|||+|||+++..++.+ .+.+++|++|+++|++|+++++++... .+..+.|+...+ .+.+
T Consensus 31 ~~~~lv~~~TGsGKT~~~~~~~~~---~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (337)
T 2z0m_A 31 GKNVVVRAKTGSGKTAAYAIPILE---LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNAD 107 (337)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHH---HTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTTCS
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHh---hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCCCC
Confidence 367889999999999998877654 489999999999999999999998543 677777765432 2689
Q ss_pred EEEecHHHHHHhh
Q 042424 125 CLVMTTEILRGML 137 (138)
Q Consensus 125 IiVtTpe~l~~lL 137 (138)
|+|+||++|.+++
T Consensus 108 i~v~T~~~l~~~~ 120 (337)
T 2z0m_A 108 IVVATPGRLLDLW 120 (337)
T ss_dssp EEEECHHHHHHHH
T ss_pred EEEECHHHHHHHH
Confidence 9999999998754
No 39
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.45 E-value=1.5e-13 Score=111.42 Aligned_cols=83 Identities=12% Similarity=0.071 Sum_probs=68.2
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHH---cCCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCcCC-------
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFR---DKQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVTLS------- 120 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~---~~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~~~------- 120 (138)
.++.++++|||+|||+++++++++.+. .+.++||++|+++|++|++++|++... .+..+.|+....
T Consensus 74 ~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 153 (410)
T 2j0s_A 74 GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD 153 (410)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh
Confidence 367889999999999999988887764 368999999999999999999998443 567777765432
Q ss_pred CCCCEEEecHHHHHHhh
Q 042424 121 PNASCLVMTTEILRGML 137 (138)
Q Consensus 121 ~~~~IiVtTpe~l~~lL 137 (138)
.+.+|+|+||++|..++
T Consensus 154 ~~~~ivv~Tp~~l~~~l 170 (410)
T 2j0s_A 154 YGQHVVAGTPGRVFDMI 170 (410)
T ss_dssp HCCSEEEECHHHHHHHH
T ss_pred cCCCEEEcCHHHHHHHH
Confidence 26799999999998765
No 40
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.45 E-value=2e-13 Score=109.48 Aligned_cols=83 Identities=17% Similarity=0.114 Sum_probs=67.9
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHc---CCcEEEEechHHHHHHHHHHHHHhc----C-ceEEEecCCcCC------
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRD---KQRVIYTSSLKALSNQKYRELHKEF----K-DVGLMTGDVTLS------ 120 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~---~~rviyv~P~kaLv~Q~~~~l~~~f----~-~v~~~tGd~~~~------ 120 (138)
..+.++++|||+|||+++++++...+.. +.++||++|+++|++|+++++++.. + .++.+.|+...+
T Consensus 45 ~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 124 (391)
T 1xti_A 45 GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 124 (391)
T ss_dssp TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHH
Confidence 3678899999999999999888877653 5699999999999999999998853 2 678888876432
Q ss_pred --CCCCEEEecHHHHHHhh
Q 042424 121 --PNASCLVMTTEILRGML 137 (138)
Q Consensus 121 --~~~~IiVtTpe~l~~lL 137 (138)
...+|+|+||++|..++
T Consensus 125 ~~~~~~iiv~T~~~l~~~~ 143 (391)
T 1xti_A 125 KKNCPHIVVGTPGRILALA 143 (391)
T ss_dssp HHSCCSEEEECHHHHHHHH
T ss_pred hcCCCCEEEECHHHHHHHH
Confidence 24799999999998754
No 41
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.45 E-value=1.7e-13 Score=110.57 Aligned_cols=83 Identities=14% Similarity=0.077 Sum_probs=67.3
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHH---cCCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCcCC-------
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFR---DKQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVTLS------- 120 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~---~~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~~~------- 120 (138)
.++.++++|||+|||+++.+++++.+. .+.+++|++|+++|+.|+++++++.+. .+....|+....
T Consensus 77 ~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQ 156 (414)
T ss_dssp TCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHT
T ss_pred CCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHh
Confidence 357889999999999999988887765 368899999999999999999998543 455556654321
Q ss_pred -CCCCEEEecHHHHHHhh
Q 042424 121 -PNASCLVMTTEILRGML 137 (138)
Q Consensus 121 -~~~~IiVtTpe~l~~lL 137 (138)
.+.+|+|+||++|..++
T Consensus 157 ~~~~~iiv~T~~~l~~~l 174 (414)
T 3eiq_A 157 MEAPHIIVGTPGRVFDML 174 (414)
T ss_dssp TTCCSEEEECHHHHHHHH
T ss_pred cCCCCEEEECHHHHHHHH
Confidence 46799999999988764
No 42
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.44 E-value=4.4e-13 Score=105.23 Aligned_cols=80 Identities=13% Similarity=0.136 Sum_probs=64.2
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcC-CcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCcCC----CCCCEE
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDK-QRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVTLS----PNASCL 126 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~-~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~~~----~~~~Ii 126 (138)
.+.++++|||+|||+++..++...+.++ .+++|++|+++|++|++++|++.+. .+..+.|+.... .+.+|+
T Consensus 129 ~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 208 (282)
T 1rif_A 129 RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVV 208 (282)
T ss_dssp SEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTTCCCTTCSEE
T ss_pred CCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchhhhccCCcEE
Confidence 5678999999999999987777776655 4999999999999999999998543 455555554433 478999
Q ss_pred EecHHHHHH
Q 042424 127 VMTTEILRG 135 (138)
Q Consensus 127 VtTpe~l~~ 135 (138)
|+||+.+..
T Consensus 209 v~T~~~l~~ 217 (282)
T 1rif_A 209 VGTWQTVVK 217 (282)
T ss_dssp EECHHHHTT
T ss_pred EEchHHHHh
Confidence 999998754
No 43
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.44 E-value=1.3e-13 Score=110.50 Aligned_cols=82 Identities=13% Similarity=0.043 Sum_probs=67.6
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHc---CCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCcCCC------C
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRD---KQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVTLSP------N 122 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~---~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~~~~------~ 122 (138)
++.++++|||+|||+++.+++++.+.. +.+++|++|+++|++|++++|++.+. .+..+.|+..... +
T Consensus 59 ~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 138 (394)
T 1fuu_A 59 HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD 138 (394)
T ss_dssp CCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCC
Confidence 677899999999999998888777643 67999999999999999999998653 5777777654321 6
Q ss_pred CCEEEecHHHHHHhh
Q 042424 123 ASCLVMTTEILRGML 137 (138)
Q Consensus 123 ~~IiVtTpe~l~~lL 137 (138)
.+|+|+||++|...+
T Consensus 139 ~~i~v~T~~~l~~~~ 153 (394)
T 1fuu_A 139 AQIVVGTPGRVFDNI 153 (394)
T ss_dssp CSEEEECHHHHHHHH
T ss_pred CCEEEECHHHHHHHH
Confidence 889999999987654
No 44
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.43 E-value=1.5e-13 Score=119.17 Aligned_cols=82 Identities=27% Similarity=0.276 Sum_probs=68.3
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcC------CcEEEEechHHHHHHH-HHHHHHhcC---ceEEEecCCcCCC----
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDK------QRVIYTSSLKALSNQK-YRELHKEFK---DVGLMTGDVTLSP---- 121 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~------~rviyv~P~kaLv~Q~-~~~l~~~f~---~v~~~tGd~~~~~---- 121 (138)
.+.++++|||+|||+++.+++.+.+..+ .++||++|+++|+.|+ +++|++.+. .++.++|+...+.
T Consensus 23 ~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~ 102 (699)
T 4gl2_A 23 KNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPE 102 (699)
T ss_dssp CCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHH
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHh
Confidence 5788999999999999999888876542 8999999999999999 999999775 7888999876542
Q ss_pred ---CCCEEEecHHHHHHhh
Q 042424 122 ---NASCLVMTTEILRGML 137 (138)
Q Consensus 122 ---~~~IiVtTpe~l~~lL 137 (138)
+.+|+|+||++|.+.+
T Consensus 103 ~~~~~~Ilv~Tp~~L~~~l 121 (699)
T 4gl2_A 103 VVKSCDIIISTAQILENSL 121 (699)
T ss_dssp HHHSCSEEEEEHHHHHHHT
T ss_pred hhcCCCEEEECHHHHHHHH
Confidence 7899999999998765
No 45
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.43 E-value=3.5e-13 Score=108.83 Aligned_cols=81 Identities=20% Similarity=0.240 Sum_probs=69.5
Q ss_pred CceEECcCCCchHHHHHHHHHHHHH-cCCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCcCCC------CCCE
Q 042424 57 HGTLTNPVYNGKTAVAEYAIAMAFR-DKQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVTLSP------NASC 125 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ai~~~l~-~~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~~~~------~~~I 125 (138)
+.++++|||+|||+++..++...+. .+.++|+++|+++|++|++++|++.++ .+..++|+..... +.+|
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~i 104 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKV 104 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHHCSE
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccCCCE
Confidence 7889999999999999988777665 588999999999999999999999775 6888888765431 6899
Q ss_pred EEecHHHHHHhh
Q 042424 126 LVMTTEILRGML 137 (138)
Q Consensus 126 iVtTpe~l~~lL 137 (138)
+|+||+.|.+.+
T Consensus 105 vv~T~~~l~~~~ 116 (494)
T 1wp9_A 105 IVATPQTIENDL 116 (494)
T ss_dssp EEECHHHHHHHH
T ss_pred EEecHHHHHHHH
Confidence 999999998754
No 46
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.41 E-value=5.3e-13 Score=113.26 Aligned_cols=82 Identities=15% Similarity=0.095 Sum_probs=62.5
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHc---CCcEEEEechHHHHHHHHHHHHHhcC--c--eEEEecCCcC---CCCCCE
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRD---KQRVIYTSSLKALSNQKYRELHKEFK--D--VGLMTGDVTL---SPNASC 125 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~---~~rviyv~P~kaLv~Q~~~~l~~~f~--~--v~~~tGd~~~---~~~~~I 125 (138)
++.++++|||+|||+++++++++.+.. +.++||++|+++|++|++++|++.+. . +....++... ..+++|
T Consensus 159 ~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 238 (508)
T 3fho_A 159 RNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQI 238 (508)
T ss_dssp CCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC----------CCCCSE
T ss_pred CCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccccccCCCCE
Confidence 677899999999999999988888754 45899999999999999999999664 2 2222232221 227899
Q ss_pred EEecHHHHHHhh
Q 042424 126 LVMTTEILRGML 137 (138)
Q Consensus 126 iVtTpe~l~~lL 137 (138)
+|+||+++.+++
T Consensus 239 vv~T~~~l~~~l 250 (508)
T 3fho_A 239 VIGTPGTVMDLM 250 (508)
T ss_dssp EEECHHHHHHHH
T ss_pred EEECHHHHHHHH
Confidence 999999988754
No 47
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.41 E-value=7.2e-13 Score=111.13 Aligned_cols=80 Identities=14% Similarity=0.199 Sum_probs=67.3
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCC-cEEEEechHHHHHHHHHHHHHh--cC--ceEEEecCCcCC----CCCCEE
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQ-RVIYTSSLKALSNQKYRELHKE--FK--DVGLMTGDVTLS----PNASCL 126 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~-rviyv~P~kaLv~Q~~~~l~~~--f~--~v~~~tGd~~~~----~~~~Ii 126 (138)
.+.++++|||+|||++++.++...+..++ +++|++|+++|++|++++|++. +. .+..+.|+.... .+.+|+
T Consensus 129 ~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~I~ 208 (510)
T 2oca_A 129 RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVV 208 (510)
T ss_dssp SEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGGGCTTCSEE
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccccccCCcEE
Confidence 57889999999999999988888776654 9999999999999999999874 22 577787776654 578999
Q ss_pred EecHHHHHH
Q 042424 127 VMTTEILRG 135 (138)
Q Consensus 127 VtTpe~l~~ 135 (138)
|+|++.+..
T Consensus 209 i~T~~~l~~ 217 (510)
T 2oca_A 209 VGTWQTVVK 217 (510)
T ss_dssp EEEHHHHTT
T ss_pred EEeHHHHhh
Confidence 999998754
No 48
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.40 E-value=4.2e-13 Score=120.55 Aligned_cols=80 Identities=25% Similarity=0.334 Sum_probs=70.6
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCcCC-----------
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVTLS----------- 120 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~~~----------- 120 (138)
.+.++++|||||||++++++++.++..|.+++|++|+++|++|++++|++.+. .++.++|+...+
T Consensus 390 ~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~ 469 (780)
T 1gm5_A 390 MNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRN 469 (780)
T ss_dssp CCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHS
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhc
Confidence 47789999999999999999999988899999999999999999999999774 788899987532
Q ss_pred CCCCEEEecHHHHHH
Q 042424 121 PNASCLVMTTEILRG 135 (138)
Q Consensus 121 ~~~~IiVtTpe~l~~ 135 (138)
.+.+|+|+||+.|..
T Consensus 470 g~~~IvVgT~~ll~~ 484 (780)
T 1gm5_A 470 GQIDVVIGTHALIQE 484 (780)
T ss_dssp SCCCEEEECTTHHHH
T ss_pred CCCCEEEECHHHHhh
Confidence 258999999998864
No 49
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=5.7e-13 Score=114.26 Aligned_cols=82 Identities=15% Similarity=0.100 Sum_probs=64.8
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcC-------CcEEEEechHHHHHHHHHHHHHhcC--------ceEEEecCCcCC
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDK-------QRVIYTSSLKALSNQKYRELHKEFK--------DVGLMTGDVTLS 120 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~-------~rviyv~P~kaLv~Q~~~~l~~~f~--------~v~~~tGd~~~~ 120 (138)
.+.++++|||+|||+++.+++++.+..+ .++||++|+++|+.|+++++++.+. .+..+.|+....
T Consensus 61 ~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~ 140 (579)
T 3sqw_A 61 HDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFR 140 (579)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHH
T ss_pred CeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHH
Confidence 5677999999999999998888777543 4899999999999999999998541 345555554321
Q ss_pred --------CCCCEEEecHHHHHHhh
Q 042424 121 --------PNASCLVMTTEILRGML 137 (138)
Q Consensus 121 --------~~~~IiVtTpe~l~~lL 137 (138)
.+.+|+|+||++|..+|
T Consensus 141 ~~~~~l~~~~~~IlV~Tp~~l~~~l 165 (579)
T 3sqw_A 141 AAMNKMNKLRPNIVIATPGRLIDVL 165 (579)
T ss_dssp HHHHHHHHHCCSEEEECHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEECHHHHHHHH
Confidence 26899999999998654
No 50
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.37 E-value=1.6e-12 Score=120.24 Aligned_cols=81 Identities=16% Similarity=0.129 Sum_probs=70.2
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCcCC----------
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVTLS---------- 120 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~~~---------- 120 (138)
.++.++++|||||||++++.++.+.+..+.++||++|+++|+.|++++|++ |. .++.++|+....
T Consensus 93 g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~-l~~~~i~v~~l~Gg~~~~er~~~~~~l~ 171 (1104)
T 4ddu_A 93 GKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQK-LADEKVKIFGFYSSMKKEEKEKFEKSFE 171 (1104)
T ss_dssp TCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHT-TSCTTSCEEEECTTCCTTHHHHHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHH-hhCCCCeEEEEeCCCCHHHHHHHHHHHh
Confidence 467889999999999988888888887899999999999999999999999 43 788899987651
Q ss_pred -CCCCEEEecHHHHHHh
Q 042424 121 -PNASCLVMTTEILRGM 136 (138)
Q Consensus 121 -~~~~IiVtTpe~l~~l 136 (138)
.+.+|+|+||++|..+
T Consensus 172 ~g~~~IlV~Tp~rL~~~ 188 (1104)
T 4ddu_A 172 EDDYHILVFSTQFVSKN 188 (1104)
T ss_dssp TSCCSEEEEEHHHHHHS
T ss_pred CCCCCEEEECHHHHHHH
Confidence 2489999999999665
No 51
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.36 E-value=9.9e-13 Score=119.47 Aligned_cols=83 Identities=19% Similarity=0.318 Sum_probs=69.0
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHc-----CCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCcCCC----
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRD-----KQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVTLSP---- 121 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~-----~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~~~~---- 121 (138)
..+.++++|||+|||+++.+++.+.+.+ +.++||++|+++|+.|++++|++.+. .+..++|+...+.
T Consensus 263 g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~ 342 (936)
T 4a2w_A 263 GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEK 342 (936)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHH
Confidence 4678899999999999999998887765 78899999999999999999999753 7888999875442
Q ss_pred ---CCCEEEecHHHHHHhh
Q 042424 122 ---NASCLVMTTEILRGML 137 (138)
Q Consensus 122 ---~~~IiVtTpe~l~~lL 137 (138)
+.+|+|+||++|..++
T Consensus 343 ~~~~~~IvI~Tp~~L~~~l 361 (936)
T 4a2w_A 343 VIEDSDIIVVTPQILVNSF 361 (936)
T ss_dssp HHHHCSEEEECHHHHHHHH
T ss_pred hccCCCEEEecHHHHHHHH
Confidence 6799999999998764
No 52
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.35 E-value=2.3e-12 Score=107.09 Aligned_cols=75 Identities=25% Similarity=0.206 Sum_probs=65.5
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcC-c-eEEEecCCcCCCCCCEEEecHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFK-D-VGLMTGDVTLSPNASCLVMTTEIL 133 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~-~-v~~~tGd~~~~~~~~IiVtTpe~l 133 (138)
.+.++++|||+|||++++.++... +.++++++|+++|+.|++++|++ |+ . +++++|+... ..+|+|+|++.+
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~-~~~~~v~~~~g~~~~--~~~Ivv~T~~~l 182 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI-FGEEYVGEFSGRIKE--LKPLTVSTYDSA 182 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGG-GCGGGEEEBSSSCBC--CCSEEEEEHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHh-CCCcceEEECCCcCC--cCCEEEEEcHHH
Confidence 457899999999999998877654 88999999999999999999999 88 6 9999987654 578999999988
Q ss_pred HHh
Q 042424 134 RGM 136 (138)
Q Consensus 134 ~~l 136 (138)
...
T Consensus 183 ~~~ 185 (472)
T 2fwr_A 183 YVN 185 (472)
T ss_dssp HHT
T ss_pred HHH
Confidence 654
No 53
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.30 E-value=8.9e-12 Score=96.52 Aligned_cols=75 Identities=25% Similarity=0.206 Sum_probs=64.0
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcC-c-eEEEecCCcCCCCCCEEEecHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFK-D-VGLMTGDVTLSPNASCLVMTTEIL 133 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~-~-v~~~tGd~~~~~~~~IiVtTpe~l 133 (138)
.+.++++|||+|||+++..++... +.+++|++|+++|++|+++++.+ |+ . ++.++|+... ..+|+|+|++.+
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~-~~~~~v~~~~g~~~~--~~~i~v~T~~~l 182 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI-FGEEYVGEFSGRIKE--LKPLTVSTYDSA 182 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGG-GCGGGEEEESSSCBC--CCSEEEEEHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh-CCCCeEEEEeCCCCC--cCCEEEEeHHHH
Confidence 457899999999999988766543 78999999999999999999999 87 5 8999887643 678999999988
Q ss_pred HHh
Q 042424 134 RGM 136 (138)
Q Consensus 134 ~~l 136 (138)
...
T Consensus 183 ~~~ 185 (237)
T 2fz4_A 183 YVN 185 (237)
T ss_dssp HHT
T ss_pred Hhh
Confidence 643
No 54
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.27 E-value=6.1e-12 Score=115.72 Aligned_cols=83 Identities=18% Similarity=0.108 Sum_probs=67.0
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcC--------ceEEEecCCcCCC-----
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFK--------DVGLMTGDVTLSP----- 121 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~--------~v~~~tGd~~~~~----- 121 (138)
.++.++++|||||||++++.++......+.+++|++|+++|+.|+++.|++.+. .++.++|+...+.
T Consensus 71 g~dvlv~apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~ 150 (1054)
T 1gku_B 71 KESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFM 150 (1054)
T ss_dssp TCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHH
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHH
Confidence 367889999999999955555555556689999999999999999999998654 4677888764321
Q ss_pred ----CCCEEEecHHHHHHhh
Q 042424 122 ----NASCLVMTTEILRGML 137 (138)
Q Consensus 122 ----~~~IiVtTpe~l~~lL 137 (138)
+.+|+|+||++|..++
T Consensus 151 ~~l~~~~IlV~TP~~L~~~l 170 (1054)
T 1gku_B 151 QNLRNFKIVITTTQFLSKHY 170 (1054)
T ss_dssp HSGGGCSEEEEEHHHHHHCS
T ss_pred hhccCCCEEEEcHHHHHHHH
Confidence 3899999999998865
No 55
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.24 E-value=1.2e-11 Score=114.66 Aligned_cols=79 Identities=20% Similarity=0.254 Sum_probs=67.5
Q ss_pred CceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCcC-----------CC
Q 042424 57 HGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVTL-----------SP 121 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~~-----------~~ 121 (138)
+.++++|||+|||++++.+++.++..|.+++|++||++|++|++++|++.|. .++.++|.... +.
T Consensus 626 d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g 705 (1151)
T 2eyq_A 626 DRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEG 705 (1151)
T ss_dssp EEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcC
Confidence 6789999999999999988888888899999999999999999999999875 57788765432 12
Q ss_pred CCCEEEecHHHHHH
Q 042424 122 NASCLVMTTEILRG 135 (138)
Q Consensus 122 ~~~IiVtTpe~l~~ 135 (138)
+.+|+|+||+.+..
T Consensus 706 ~~dIvV~T~~ll~~ 719 (1151)
T 2eyq_A 706 KIDILIGTHKLLQS 719 (1151)
T ss_dssp CCSEEEECTHHHHS
T ss_pred CCCEEEECHHHHhC
Confidence 68999999988754
No 56
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.22 E-value=2.6e-11 Score=107.47 Aligned_cols=77 Identities=19% Similarity=0.110 Sum_probs=66.8
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcC-ceEEEecCCcCCCCCCEEEecHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFK-DVGLMTGDVTLSPNASCLVMTTEILR 134 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~-~v~~~tGd~~~~~~~~IiVtTpe~l~ 134 (138)
++.++++|||||||+++.++++ .++.+++|++|+++|+.|.++++.+.++ .++...|+.....+.+|+|+||++|.
T Consensus 233 ~~vlv~ApTGSGKT~a~~l~ll---~~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~~~~~~~IlV~TPGrLl 309 (666)
T 3o8b_A 233 QVAHLHAPTGSGKSTKVPAAYA---AQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRTITTGAPVTYSTYGKFL 309 (666)
T ss_dssp EEEEEECCTTSCTTTHHHHHHH---HTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEECCCCSEEEEEHHHHH
T ss_pred CeEEEEeCCchhHHHHHHHHHH---HCCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEeccCCCCEEEECcHHHH
Confidence 4567999999999988877664 3578999999999999999999988787 78888898777778999999999985
Q ss_pred H
Q 042424 135 G 135 (138)
Q Consensus 135 ~ 135 (138)
.
T Consensus 310 ~ 310 (666)
T 3o8b_A 310 A 310 (666)
T ss_dssp H
T ss_pred h
Confidence 3
No 57
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.18 E-value=6.1e-11 Score=103.20 Aligned_cols=76 Identities=12% Similarity=0.135 Sum_probs=63.3
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcC-ceEEEecCCcC-------------C
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFK-DVGLMTGDVTL-------------S 120 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~-~v~~~tGd~~~-------------~ 120 (138)
.++.++++|||+|||+++.++++ ..+.++||++|+++|+.|+++.|++ ++ .+..++|+... +
T Consensus 59 g~d~lv~~pTGsGKTl~~~lpal---~~~g~~lVisP~~~L~~q~~~~l~~-~gi~~~~l~~~~~~~~~~~~~~~l~~~~ 134 (591)
T 2v1x_A 59 GKEVFLVMPTGGGKSLCYQLPAL---CSDGFTLVICPLISLMEDQLMVLKQ-LGISATMLNASSSKEHVKWVHAEMVNKN 134 (591)
T ss_dssp TCCEEEECCTTSCTTHHHHHHHH---TSSSEEEEECSCHHHHHHHHHHHHH-HTCCEEECCSSCCHHHHHHHHHHHHCTT
T ss_pred CCCEEEEECCCChHHHHHHHHHH---HcCCcEEEEeCHHHHHHHHHHHHHh-cCCcEEEEeCCCCHHHHHHHHHHhhccc
Confidence 36788999999999999877664 3577999999999999999999998 56 77888876542 3
Q ss_pred CCCCEEEecHHHHH
Q 042424 121 PNASCLVMTTEILR 134 (138)
Q Consensus 121 ~~~~IiVtTpe~l~ 134 (138)
.+.+|+|+|||+|.
T Consensus 135 ~~~~Ilv~Tpe~L~ 148 (591)
T 2v1x_A 135 SELKLIYVTPEKIA 148 (591)
T ss_dssp CCCCEEEECHHHHH
T ss_pred CCCCEEEEChhHhh
Confidence 47899999999874
No 58
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.16 E-value=1.7e-10 Score=88.38 Aligned_cols=82 Identities=18% Similarity=0.130 Sum_probs=60.0
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHH-cCC----cEEEEechHHHHHHHHHHHHHhcC-----ceEEEecCC-cC-CCCC
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFR-DKQ----RVIYTSSLKALSNQKYRELHKEFK-----DVGLMTGDV-TL-SPNA 123 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~-~~~----rviyv~P~kaLv~Q~~~~l~~~f~-----~v~~~tGd~-~~-~~~~ 123 (138)
++.++++|||||||..+...+...+. .+. +++++.|+++|+.|.++.+.+.++ .++.-.... .. ..+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 55679999999999877666655443 333 899999999999999999988765 233221111 11 2467
Q ss_pred CEEEecHHHHHHhh
Q 042424 124 SCLVMTTEILRGML 137 (138)
Q Consensus 124 ~IiVtTpe~l~~lL 137 (138)
+|+|+||+++..++
T Consensus 157 ~Ivv~Tpg~l~~~l 170 (235)
T 3llm_A 157 SIMFCTVGVLLRKL 170 (235)
T ss_dssp EEEEEEHHHHHHHH
T ss_pred eEEEECHHHHHHHH
Confidence 89999999998765
No 59
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.14 E-value=2.8e-11 Score=103.66 Aligned_cols=79 Identities=14% Similarity=0.157 Sum_probs=50.9
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHH---------cCCcEEEEechHHHHHHHH-HHHHHhcC-ceEEEecCCcCCCCCC
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFR---------DKQRVIYTSSLKALSNQKY-RELHKEFK-DVGLMTGDVTLSPNAS 124 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~---------~~~rviyv~P~kaLv~Q~~-~~l~~~f~-~v~~~tGd~~~~~~~~ 124 (138)
++.++++|||+|||++++.++...+. .+.++||++|+++|++|++ +.|+. |+ .+..+.+. ..+.+.+
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~~-~~~~~~~~~~~-~~~~~~~ 276 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFTP-FGDARHKIEGG-KVVKSRE 276 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCTT-TCSSEEECCC---CCSSCS
T ss_pred CceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHHh-cchhhhhhhcc-CCCCCCc
Confidence 45689999999999998877776665 3489999999999999999 77765 65 56665543 3445789
Q ss_pred EEEecHHHHHHh
Q 042424 125 CLVMTTEILRGM 136 (138)
Q Consensus 125 IiVtTpe~l~~l 136 (138)
|+|+||+.|...
T Consensus 277 I~v~T~~~l~~~ 288 (590)
T 3h1t_A 277 IYFAIYQSIASD 288 (590)
T ss_dssp EEEEEGGGC---
T ss_pred EEEEEhhhhccc
Confidence 999999988654
No 60
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.13 E-value=4.4e-11 Score=102.28 Aligned_cols=77 Identities=14% Similarity=0.070 Sum_probs=62.9
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcC-ceEEEecCCcCC-----------CC
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFK-DVGLMTGDVTLS-----------PN 122 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~-~v~~~tGd~~~~-----------~~ 122 (138)
.++.++++|||+|||+++.++++ ..+.++||++|+++|++|+++.|++ ++ .+..+.|+...+ ..
T Consensus 40 g~d~lv~apTGsGKTl~~~lp~l---~~~g~~lvi~P~~aL~~q~~~~l~~-~gi~~~~l~~~~~~~~~~~~~~~~~~~~ 115 (523)
T 1oyw_A 40 GRDCLVVMPTGGGKSLCYQIPAL---LLNGLTVVVSPLISLMKDQVDQLQA-NGVAAACLNSTQTREQQLEVMTGCRTGQ 115 (523)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHH---HSSSEEEEECSCHHHHHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHHHHHTC
T ss_pred CCCEEEECCCCcHHHHHHHHHHH---HhCCCEEEECChHHHHHHHHHHHHH-cCCcEEEEeCCCCHHHHHHHHHHHhcCC
Confidence 35788999999999999887664 3467899999999999999999998 55 777787765421 25
Q ss_pred CCEEEecHHHHHH
Q 042424 123 ASCLVMTTEILRG 135 (138)
Q Consensus 123 ~~IiVtTpe~l~~ 135 (138)
.+|+|+|||+|.+
T Consensus 116 ~~ilv~Tpe~l~~ 128 (523)
T 1oyw_A 116 IRLLYIAPERLML 128 (523)
T ss_dssp CSEEEECHHHHTS
T ss_pred CCEEEECHHHHhC
Confidence 8999999999853
No 61
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.07 E-value=1.7e-10 Score=96.27 Aligned_cols=78 Identities=17% Similarity=0.129 Sum_probs=56.4
Q ss_pred CCceEECcCCCchHHHHHHHHH-HHHHcCCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCcC--CCCCCEEEecHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYAIA-MAFRDKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTL--SPNASCLVMTTEI 132 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~-~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~~--~~~~~IiVtTpe~ 132 (138)
++.++++|||||||++++.+++ .++..|.+++|++||++|++|+++.|.. + .++..+|.... .++.-+.++|...
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~~-~-~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALRG-E-PIRYMTPAVQSERTGNEIVDFMCHST 80 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT-S-CEEEC---------CCCSEEEEEHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhCC-C-eEEEEecCccccCCCCceEEEEchHH
Confidence 4678999999999999987776 5556788999999999999999987752 2 67777665322 2355677778776
Q ss_pred HHH
Q 042424 133 LRG 135 (138)
Q Consensus 133 l~~ 135 (138)
+..
T Consensus 81 l~~ 83 (431)
T 2v6i_A 81 FTM 83 (431)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 62
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.00 E-value=7.3e-10 Score=92.86 Aligned_cols=78 Identities=13% Similarity=0.060 Sum_probs=56.9
Q ss_pred CceEECcCCCchHHHHHHHHH-HHHHcCCcEEEEechHHHHHHHHHHHHHhcCceEEEecCC--cCCCCCCEEEecHHHH
Q 042424 57 HGTLTNPVYNGKTAVAEYAIA-MAFRDKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDV--TLSPNASCLVMTTEIL 133 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ai~-~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~--~~~~~~~IiVtTpe~l 133 (138)
..++++|||||||++++.+++ +++..+.+++|++|+++|++|+++.+.. + .++...+.. ....+..|.++|++.+
T Consensus 21 ~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g-~-~v~~~~~~~~~~~~~~~~i~~~t~~~l 98 (451)
T 2jlq_A 21 LTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRG-L-PIRYQTPAVKSDHTGREIVDLMCHATF 98 (451)
T ss_dssp EEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT-S-CEEECCTTCSCCCCSSCCEEEEEHHHH
T ss_pred eEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcC-c-eeeeeeccccccCCCCceEEEEChHHH
Confidence 347999999999998776554 4455688999999999999999998753 2 343332222 1223667999999987
Q ss_pred HHh
Q 042424 134 RGM 136 (138)
Q Consensus 134 ~~l 136 (138)
...
T Consensus 99 ~~~ 101 (451)
T 2jlq_A 99 TTR 101 (451)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 63
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=98.99 E-value=4.9e-10 Score=101.43 Aligned_cols=75 Identities=15% Similarity=0.051 Sum_probs=63.4
Q ss_pred eEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCcCCC-----CCCEEEec
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVTLSP-----NASCLVMT 129 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~~~~-----~~~IiVtT 129 (138)
+..++||+|||+++.++++.....|.++++++||+.|+.|.++.+...+. +|+.+.|+..... .++|+|+|
T Consensus 91 Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~~~dIvvgT 170 (853)
T 2fsf_A 91 IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGT 170 (853)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHHHSSEEEEE
T ss_pred eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhcCCCEEEEC
Confidence 89999999999999988875445688999999999999999998887543 7888888765321 68999999
Q ss_pred HHHH
Q 042424 130 TEIL 133 (138)
Q Consensus 130 pe~l 133 (138)
|.+|
T Consensus 171 pgrl 174 (853)
T 2fsf_A 171 NNEY 174 (853)
T ss_dssp HHHH
T ss_pred Cchh
Confidence 9997
No 64
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.96 E-value=2e-09 Score=89.88 Aligned_cols=79 Identities=14% Similarity=0.032 Sum_probs=63.5
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHc--CCcEEEEechHHHHHHHHHHHHHhcC--ceEEEecCCcCCC--CCCEEEec
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRD--KQRVIYTSSLKALSNQKYRELHKEFK--DVGLMTGDVTLSP--NASCLVMT 129 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~--~~rviyv~P~kaLv~Q~~~~l~~~f~--~v~~~tGd~~~~~--~~~IiVtT 129 (138)
.+.+++.+||+|||++++..+...... ..++|+|+| .+|+.|+.++|++.+. .+.++.|+..... +.+|+|+|
T Consensus 57 ~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~~~v~~~~g~~~~~~~~~~~ivi~t 135 (500)
T 1z63_A 57 FGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAPHLRFAVFHEDRSKIKLEDYDIILTT 135 (500)
T ss_dssp CCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTTSCEEECSSSTTSCCGGGSSEEEEE
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCCCceEEEEecCchhccccCCcEEEee
Confidence 567899999999999998777665554 478999999 6799999999999654 6777777654322 67899999
Q ss_pred HHHHHH
Q 042424 130 TEILRG 135 (138)
Q Consensus 130 pe~l~~ 135 (138)
++.+..
T Consensus 136 ~~~l~~ 141 (500)
T 1z63_A 136 YAVLLR 141 (500)
T ss_dssp HHHHTT
T ss_pred HHHHhc
Confidence 999864
No 65
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=98.94 E-value=1.5e-09 Score=96.28 Aligned_cols=75 Identities=21% Similarity=0.210 Sum_probs=58.6
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCcCCC-----CCCEEEecH
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLSP-----NASCLVMTT 130 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~~~~-----~~~IiVtTp 130 (138)
++.+++||||||||+.++.++ ....+.+|++|+++|+.|++++|++....+++++|+..... ..+++++|+
T Consensus 156 k~vlv~apTGSGKT~~al~~l----~~~~~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG~~~~iv~TpGr~~~il~~T~ 231 (677)
T 3rc3_A 156 KIIFHSGPTNSGKTYHAIQKY----FSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTV 231 (677)
T ss_dssp EEEEEECCTTSSHHHHHHHHH----HHSSSEEEEESSHHHHHHHHHHHHHTTCCEEEECSSCEECCSTTCCCCSEEEEEG
T ss_pred CEEEEEcCCCCCHHHHHHHHH----HhcCCeEEEeCHHHHHHHHHHHHHhcCCcEEEEECCeeEEecCCCcccceeEecH
Confidence 456799999999998544443 33466799999999999999999884338999999865432 488999999
Q ss_pred HHHH
Q 042424 131 EILR 134 (138)
Q Consensus 131 e~l~ 134 (138)
|.+.
T Consensus 232 e~~~ 235 (677)
T 3rc3_A 232 EMCS 235 (677)
T ss_dssp GGCC
T ss_pred hHhh
Confidence 8653
No 66
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.92 E-value=1.8e-09 Score=98.62 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=64.8
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcC--CcEEEEechHHHHHHHHHHHHHhcC-ceEEEecCCc---------CCCCC
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDK--QRVIYTSSLKALSNQKYRELHKEFK-DVGLMTGDVT---------LSPNA 123 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~--~rviyv~P~kaLv~Q~~~~l~~~f~-~v~~~tGd~~---------~~~~~ 123 (138)
.+.+|+.+||+|||+++..++...+..| ++++||+|+ +|+.|+.++|.+.|+ .+.++.|+.. ...+.
T Consensus 171 ~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~~~~~~~~~~~~~~~~~~~~ 249 (968)
T 3dmq_A 171 PRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTE 249 (968)
T ss_dssp CEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEECCHHHHHHHHHTTCSSSTTC
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEEccchhhhhhhhcccccccC
Confidence 4677999999999999998888877765 499999999 999999999988888 7777765431 11267
Q ss_pred CEEEecHHHHHH
Q 042424 124 SCLVMTTEILRG 135 (138)
Q Consensus 124 ~IiVtTpe~l~~ 135 (138)
+|+|+|++.+..
T Consensus 250 dIvI~T~~~L~~ 261 (968)
T 3dmq_A 250 QLVICSLDFARR 261 (968)
T ss_dssp SEEEECHHHHHT
T ss_pred CEEEEcHHHHhh
Confidence 899999998853
No 67
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=98.92 E-value=1.7e-09 Score=97.99 Aligned_cols=75 Identities=17% Similarity=0.148 Sum_probs=62.4
Q ss_pred eEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCcCCC-----CCCEEEec
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVTLSP-----NASCLVMT 129 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~~~~-----~~~IiVtT 129 (138)
+..++||+|||+++.+++......|..+++++|++.|+.|.++.+...+. +|+.+.|+..... .++|+|+|
T Consensus 100 Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~~~dIv~gT 179 (844)
T 1tf5_A 100 IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAYAADITYST 179 (844)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHHHSSEEEEE
T ss_pred EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhcCCCEEEEC
Confidence 89999999999999988763334588999999999999999988887543 7888888764322 68999999
Q ss_pred HHHH
Q 042424 130 TEIL 133 (138)
Q Consensus 130 pe~l 133 (138)
|..|
T Consensus 180 pgrl 183 (844)
T 1tf5_A 180 NNEL 183 (844)
T ss_dssp HHHH
T ss_pred chhh
Confidence 9998
No 68
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=98.89 E-value=2.4e-09 Score=89.95 Aligned_cols=78 Identities=18% Similarity=0.091 Sum_probs=54.7
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHH-HcCCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCc--CCCCCCEEEecHH
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAF-RDKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVT--LSPNASCLVMTTE 131 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l-~~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~--~~~~~~IiVtTpe 131 (138)
.++.++++|||||||+++.+++++.+ ..+.++||++|+++|++|++++|+. + .++...+... ..+..-+.++|..
T Consensus 21 ~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g-~-~v~~~~~~~~~~~t~~~~i~~~~~~ 98 (459)
T 2z83_A 21 RQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRG-L-PVRYQTSAVQREHQGNEIVDVMCHA 98 (459)
T ss_dssp TCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTT-S-CEEECC--------CCCSEEEEEHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcC-c-eEeEEecccccCCCCCcEEEEEchH
Confidence 35677999999999999877666554 4688999999999999999998863 2 3333332221 1234557777877
Q ss_pred HHH
Q 042424 132 ILR 134 (138)
Q Consensus 132 ~l~ 134 (138)
.+.
T Consensus 99 ~l~ 101 (459)
T 2z83_A 99 TLT 101 (459)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 69
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.86 E-value=2.9e-09 Score=97.27 Aligned_cols=75 Identities=20% Similarity=0.156 Sum_probs=63.5
Q ss_pred eEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCcCCC-----CCCEEEec
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVTLSP-----NASCLVMT 129 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~~~~-----~~~IiVtT 129 (138)
+..+.||+|||+++.+++......|..+++++||+.|+.|.++.+...+. +|++++|+..... .++|+|+|
T Consensus 96 IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay~~DIvyGT 175 (997)
T 2ipc_A 96 IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAYLADVTYVT 175 (997)
T ss_dssp EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHHTSSEEEEE
T ss_pred eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHcCCCEEEEC
Confidence 89999999999999988854444688999999999999999999888654 7888888765322 78999999
Q ss_pred HHHH
Q 042424 130 TEIL 133 (138)
Q Consensus 130 pe~l 133 (138)
|..|
T Consensus 176 pgrl 179 (997)
T 2ipc_A 176 NSEL 179 (997)
T ss_dssp HHHH
T ss_pred chhh
Confidence 9998
No 70
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=98.84 E-value=3.8e-09 Score=96.19 Aligned_cols=76 Identities=14% Similarity=0.085 Sum_probs=62.8
Q ss_pred ceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcC----ceEEEecCCcCCC-----CCCEEEe
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTGDVTLSP-----NASCLVM 128 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tGd~~~~~-----~~~IiVt 128 (138)
.+..++||+|||+++.+++......|..+++++|++.|+.|.++.+...+. +|+.+.|+..... .++|+++
T Consensus 127 ~Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y~~DIvyg 206 (922)
T 1nkt_A 127 NVAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAYNADITYG 206 (922)
T ss_dssp EEEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHHHSSEEEE
T ss_pred CEEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhcCCCEEEE
Confidence 389999999999999888754334588999999999999999988877543 7888888765322 6899999
Q ss_pred cHHHH
Q 042424 129 TTEIL 133 (138)
Q Consensus 129 Tpe~l 133 (138)
||..|
T Consensus 207 Tpgrl 211 (922)
T 1nkt_A 207 TNNEF 211 (922)
T ss_dssp EHHHH
T ss_pred CchHh
Confidence 99997
No 71
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=98.83 E-value=1.7e-09 Score=90.49 Aligned_cols=51 Identities=14% Similarity=0.052 Sum_probs=44.4
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHH-cCCcEEEEechHHHHHHHHHHHHH
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFR-DKQRVIYTSSLKALSNQKYRELHK 105 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~-~~~rviyv~P~kaLv~Q~~~~l~~ 105 (138)
.++.++++|||||||++++.++++.+. .+.+++|++||++|+.|+++.|+.
T Consensus 8 g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~ 59 (440)
T 1yks_A 8 GMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHG 59 (440)
T ss_dssp TCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhc
Confidence 467789999999999999887777554 567999999999999999998875
No 72
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.78 E-value=9.8e-09 Score=91.92 Aligned_cols=82 Identities=15% Similarity=0.138 Sum_probs=57.5
Q ss_pred CCceEECcCCCchHHHH-HHHHHHHHHc--CCcEEEEechHHHHHHHHHHHHHhcC-ceEEEec-----CCcCCCCCCEE
Q 042424 56 THGTLTNPVYNGKTAVA-EYAIAMAFRD--KQRVIYTSSLKALSNQKYRELHKEFK-DVGLMTG-----DVTLSPNASCL 126 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva-~~ai~~~l~~--~~rviyv~P~kaLv~Q~~~~l~~~f~-~v~~~tG-----d~~~~~~~~Ii 126 (138)
.+.++++|||||||+.. .+.+...+.. |.+++++.|+++|+.|+++.+.+.++ .++...| +.....+.+|+
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~ 189 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILK 189 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEE
Confidence 45779999999999943 2322222223 66799999999999999999988765 3322222 12233478999
Q ss_pred EecHHHHHHhh
Q 042424 127 VMTTEILRGML 137 (138)
Q Consensus 127 VtTpe~l~~lL 137 (138)
|+||+++...+
T Consensus 190 v~T~G~l~r~l 200 (773)
T 2xau_A 190 YMTDGMLLREA 200 (773)
T ss_dssp EEEHHHHHHHH
T ss_pred EECHHHHHHHH
Confidence 99999987653
No 73
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=98.77 E-value=1.1e-08 Score=89.50 Aligned_cols=78 Identities=9% Similarity=0.040 Sum_probs=57.2
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHH-HcCCcEEEEechHHHHHHHHHHHHHhcCceEEEecCC---cCCCCCCEEEecH
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAF-RDKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDV---TLSPNASCLVMTT 130 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l-~~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~---~~~~~~~IiVtTp 130 (138)
.++.++++|||||||+++++++++.+ ..+.++||++|+++|++|+++.|+. + .++ +.++. ...+...+.++|.
T Consensus 186 g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~~-~-~v~-~~~~~l~~~~tp~~~i~~~t~ 262 (618)
T 2whx_A 186 KRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRG-L-PIR-YQTPAVKSDHTGREIVDLMCH 262 (618)
T ss_dssp TCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT-S-CEE-ECCTTSSCCCCSSSCEEEEEH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhcC-C-cee-EecccceeccCCCceEEEECh
Confidence 46778999999999999877666554 4578999999999999999988763 2 455 33322 1223556778888
Q ss_pred HHHHH
Q 042424 131 EILRG 135 (138)
Q Consensus 131 e~l~~ 135 (138)
..+..
T Consensus 263 ~~l~~ 267 (618)
T 2whx_A 263 ATFTT 267 (618)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 74
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.69 E-value=9.5e-09 Score=94.84 Aligned_cols=79 Identities=20% Similarity=0.252 Sum_probs=57.2
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHc---CCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCc------C-CCCCCE
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRD---KQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVT------L-SPNASC 125 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~---~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~------~-~~~~~I 125 (138)
++.+++++||||||++++.++ +.+.. ..++|+++|+++|+.|..++|.. |....+..+... . +.+.+|
T Consensus 301 ~~gli~~~TGSGKT~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~~f~~-f~~~~v~~~~s~~~l~~~L~~~~~~I 378 (1038)
T 2w00_A 301 SGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDRKDLDYQTMKEYQR-FSPDSVNGSENTAGLKRNLDKDDNKI 378 (1038)
T ss_dssp GSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECGGGCCHHHHHHHHT-TSTTCSSSSCCCHHHHHHHHCSSCCE
T ss_pred CCEEEEecCCCCHHHHHHHHH-HHHHhcCCCceEEEEeCcHHHHHHHHHHHHH-hcccccccccCHHHHHHHhcCCCCCE
Confidence 457899999999999985544 44442 36999999999999999999988 541111111110 1 236899
Q ss_pred EEecHHHHHHh
Q 042424 126 LVMTTEILRGM 136 (138)
Q Consensus 126 iVtTpe~l~~l 136 (138)
+|+|+++|..+
T Consensus 379 iVtTiqkl~~~ 389 (1038)
T 2w00_A 379 IVTTIQKLNNL 389 (1038)
T ss_dssp EEEEHHHHHHH
T ss_pred EEEEHHHHHHH
Confidence 99999999764
No 75
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.67 E-value=1.7e-08 Score=86.55 Aligned_cols=57 Identities=21% Similarity=0.224 Sum_probs=46.6
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhc---C-ceEEEec
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEF---K-DVGLMTG 115 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f---~-~v~~~tG 115 (138)
++.++.+|||+|||++++++++. .+.+++|++||++|++|..+++.... + .+..+.|
T Consensus 23 ~~~~~~a~TGtGKT~~~l~p~l~---~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~g 83 (551)
T 3crv_A 23 FLVALNAPTGSGKTLFSLLVSLE---VKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLVG 83 (551)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH---HCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECCC
T ss_pred CcEEEECCCCccHHHHHHHHHHh---CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEcc
Confidence 56779999999999999887765 58899999999999999999998732 2 4555555
No 76
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.64 E-value=5.6e-08 Score=83.33 Aligned_cols=49 Identities=16% Similarity=0.095 Sum_probs=42.1
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcC
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFK 108 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~ 108 (138)
++.++.+|||+|||+++++++. ..+.+++|++||++|++|.++++.+ ++
T Consensus 27 ~~~~~~a~TGtGKT~~~l~~~~---~~~~~~~~~~~t~~l~~q~~~~~~~-l~ 75 (540)
T 2vl7_A 27 KTLLLNAKPGLGKTVFVEVLGM---QLKKKVLIFTRTHSQLDSIYKNAKL-LG 75 (540)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH---HHTCEEEEEESCHHHHHHHHHHHGG-GT
T ss_pred CCEEEEcCCCCcHHHHHHHHHH---hCCCcEEEEcCCHHHHHHHHHHHHh-cC
Confidence 5677999999999998877653 4589999999999999999999877 54
No 77
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=98.63 E-value=1.6e-08 Score=89.41 Aligned_cols=51 Identities=14% Similarity=0.034 Sum_probs=44.5
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHH-HcCCcEEEEechHHHHHHHHHHHHH
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAF-RDKQRVIYTSSLKALSNQKYRELHK 105 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l-~~~~rviyv~P~kaLv~Q~~~~l~~ 105 (138)
.++.++++|||||||+++++++++.+ ..+.+++|++|+++|+.|+++.|+.
T Consensus 241 g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~ 292 (673)
T 2wv9_A 241 RQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRG 292 (673)
T ss_dssp TCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhc
Confidence 46778999999999999988777664 4578999999999999999998875
No 78
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.48 E-value=3.4e-07 Score=81.77 Aligned_cols=80 Identities=15% Similarity=0.046 Sum_probs=63.1
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHH---cCCcEEEEechHHHHHHHHHHHHHhcC--ceEEEecCCc-----------
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFR---DKQRVIYTSSLKALSNQKYRELHKEFK--DVGLMTGDVT----------- 118 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~---~~~rviyv~P~kaLv~Q~~~~l~~~f~--~v~~~tGd~~----------- 118 (138)
..+.+|+.++|.|||+.++.++...+. .++.+|+|+| .+|+.|+.++|.+.+. .+.++.|+..
T Consensus 255 ~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~ 333 (800)
T 3mwy_W 255 GDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFY 333 (800)
T ss_dssp TCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHHHhh
Confidence 367889999999999999866665543 2678999999 7899999999999664 6777777642
Q ss_pred --------CCCCCCEEEecHHHHHH
Q 042424 119 --------LSPNASCLVMTTEILRG 135 (138)
Q Consensus 119 --------~~~~~~IiVtTpe~l~~ 135 (138)
...+.+|+|+|++.+..
T Consensus 334 ~~~~~~~~~~~~~dvvitTy~~l~~ 358 (800)
T 3mwy_W 334 TNPRAKGKKTMKFNVLLTTYEYILK 358 (800)
T ss_dssp SCC-----CCCCCSEEEECTTHHHH
T ss_pred ccccccccccccCCEEEecHHHHHh
Confidence 11267899999999865
No 79
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.42 E-value=3.3e-07 Score=80.17 Aligned_cols=52 Identities=23% Similarity=0.210 Sum_probs=45.3
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHH-cCCcEEEEechHHHHHHHHHHHHHh
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFR-DKQRVIYTSSLKALSNQKYRELHKE 106 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~-~~~rviyv~P~kaLv~Q~~~~l~~~ 106 (138)
.++.++.+|||+|||++++++++..+. .+.+++|++||++|+.|..+++...
T Consensus 22 ~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 22 SYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHH
Confidence 356789999999999999987776654 4899999999999999999998873
No 80
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.34 E-value=1.3e-06 Score=76.28 Aligned_cols=79 Identities=19% Similarity=0.154 Sum_probs=59.1
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcC-------CcEEEEechHHHHHHHHHHHHHhcC---ceEEEecCCcC------
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDK-------QRVIYTSSLKALSNQKYRELHKEFK---DVGLMTGDVTL------ 119 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~-------~rviyv~P~kaLv~Q~~~~l~~~f~---~v~~~tGd~~~------ 119 (138)
.+.+|..+||.|||+.++..+...+..+ +++|+|+|. +|+.|+.++|.+.+. .+..+.|....
T Consensus 80 ~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~~~~~~~~~~~~~~~~g~~~~~~~~~ 158 (644)
T 1z3i_X 80 YGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKL 158 (644)
T ss_dssp CEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHHHHHHGGGCCEEEECSSCHHHHHHHH
T ss_pred CCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHH
Confidence 4578999999999999987777766542 469999997 899999999999654 23334433211
Q ss_pred ---------CCCCCEEEecHHHHHH
Q 042424 120 ---------SPNASCLVMTTEILRG 135 (138)
Q Consensus 120 ---------~~~~~IiVtTpe~l~~ 135 (138)
....+|+|+|++.+..
T Consensus 159 ~~~~~~~~~~~~~~vvi~ty~~l~~ 183 (644)
T 1z3i_X 159 VNFISQQGMRIPTPILIISYETFRL 183 (644)
T ss_dssp HHHHCCCSSCCSCCEEEEEHHHHHH
T ss_pred HHHHHhcCCCCCCcEEEeeHHHHHh
Confidence 1247899999999864
No 81
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=97.44 E-value=0.00046 Score=62.35 Aligned_cols=59 Identities=17% Similarity=0.092 Sum_probs=48.2
Q ss_pred CCceEECcCCCchHHHHHHHHH-HHHHcCCcEEEEechHHHHHHHHHHHHHhcC----ceEEEec
Q 042424 56 THGTLTNPVYNGKTAVAEYAIA-MAFRDKQRVIYTSSLKALSNQKYRELHKEFK----DVGLMTG 115 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~-~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~----~v~~~tG 115 (138)
...+....||+|||+++.+++. .+| .|+.+.+|.|+.-|+.|-++.+...|. +|+.+..
T Consensus 89 ~G~iaEM~TGEGKTLva~lp~~lnAL-~G~~vhVvT~ndyLA~rdae~m~~l~~~Lglsvg~i~~ 152 (822)
T 3jux_A 89 EGKVAEMKTGEGKTLAATMPIYLNAL-IGKGVHLVTVNDYLARRDALWMGPVYLFLGLRVGVINS 152 (822)
T ss_dssp TTCEEECCTTSCHHHHTHHHHHHHHT-TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEEET
T ss_pred CCChhhccCCCCccHHHHHHHHHHHh-cCCceEEEeccHHHHHhHHHHHHHHHHHhCCEEEEEcC
Confidence 4457889999999999987665 554 589999999999999999888777553 7887776
No 82
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.33 E-value=0.00043 Score=60.24 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=44.2
Q ss_pred ceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHK 105 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~ 105 (138)
.+|.||.|+|||.+....|.+.+.++.++++++|+..-+++..+.+.+
T Consensus 208 ~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHh
Confidence 459999999999999888888888899999999999999999999876
No 83
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.01 E-value=0.0019 Score=56.78 Aligned_cols=48 Identities=23% Similarity=0.178 Sum_probs=40.1
Q ss_pred ceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcC
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFK 108 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~ 108 (138)
..+.+.||||||+++...+.+. ++.+|+|+|.+.++.|.+.+|+..|.
T Consensus 31 ~~l~g~tgs~kt~~~a~~~~~~---~~~~lvv~~~~~~A~ql~~el~~~~~ 78 (664)
T 1c4o_A 31 VTLLGATGTGKTVTMAKVIEAL---GRPALVLAPNKILAAQLAAEFRELFP 78 (664)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH---TCCEEEEESSHHHHHHHHHHHHHHCT
T ss_pred EEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecCHHHHHHHHHHHHHHCC
Confidence 4689999999998776544322 67899999999999999999999775
No 84
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.92 E-value=0.0017 Score=55.58 Aligned_cols=53 Identities=11% Similarity=0.032 Sum_probs=45.7
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcC----CcEEEEechHHHHHHHHHHHHHhcC
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDK----QRVIYTSSLKALSNQKYRELHKEFK 108 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~----~rviyv~P~kaLv~Q~~~~l~~~f~ 108 (138)
++.+|.|+.|||||.+...-+.+.+..+ .+++++++++..+.++.+++.+.++
T Consensus 23 ~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 23 SNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp SCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 5667999999999999988887777653 6899999999999999999988653
No 85
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.83 E-value=0.002 Score=55.97 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=41.6
Q ss_pred CceEECcCCCchHHHHHHHHHHHHH-cCCcEEEEechHHHHHHHHHHHHH
Q 042424 57 HGTLTNPVYNGKTAVAEYAIAMAFR-DKQRVIYTSSLKALSNQKYRELHK 105 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ai~~~l~-~~~rviyv~P~kaLv~Q~~~~l~~ 105 (138)
..+|.||.|+|||.+....+.+.+. .+.++++++|+...+++..+.+.+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 3469999999999988766666555 578999999999999999998876
No 86
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.0041 Score=55.92 Aligned_cols=48 Identities=15% Similarity=0.211 Sum_probs=41.7
Q ss_pred ceEECcCCCchHHHHHHHHHHHHH-cCCcEEEEechHHHHHHHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFR-DKQRVIYTSSLKALSNQKYRELHK 105 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~-~~~rviyv~P~kaLv~Q~~~~l~~ 105 (138)
.+|.||.|+|||.+....+.+.+. .+.++++++|+..-+++..+.+.+
T Consensus 378 ~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 378 SLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 569999999999988766666555 589999999999999999999887
No 87
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.52 E-value=0.0041 Score=54.04 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=37.1
Q ss_pred CCceEECcCCCchHHHHHHHHHHHH----HcCCcEEEEechHHHHHHHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAF----RDKQRVIYTSSLKALSNQKYRELHK 105 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l----~~~~rviyv~P~kaLv~Q~~~~l~~ 105 (138)
+..++++|+|+|||.+....+.... ..+.++++++||..++.+..+.+..
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~ 218 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK 218 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHH
Confidence 4566999999999966544333322 2356999999999999998877654
No 88
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.26 E-value=0.0072 Score=54.37 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=40.7
Q ss_pred ceEECcCCCchHHHHHHHHHHHHH-cCCcEEEEechHHHHHHHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFR-DKQRVIYTSSLKALSNQKYRELHK 105 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~-~~~rviyv~P~kaLv~Q~~~~l~~ 105 (138)
.+|.||.|+|||.+....+.+.+. .+.++++++|+..-+++..+.+.+
T Consensus 374 ~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 374 SLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 469999999999988766665555 578999999999999999988876
No 89
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.11 E-value=0.012 Score=49.03 Aligned_cols=47 Identities=17% Similarity=0.252 Sum_probs=36.8
Q ss_pred CceEECcCCCchHHHHHHHHHHHHHcCC-cEEEEechHHHHHHHHHHH
Q 042424 57 HGTLTNPVYNGKTAVAEYAIAMAFRDKQ-RVIYTSSLKALSNQKYREL 103 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ai~~~l~~~~-rviyv~P~kaLv~Q~~~~l 103 (138)
..+|.||.|+|||.++...+......+. ++++++||...+.+..+.+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh
Confidence 5679999999999988766655555665 8999999988887766544
No 90
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.94 E-value=0.0087 Score=44.37 Aligned_cols=46 Identities=15% Similarity=0.079 Sum_probs=32.8
Q ss_pred ceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELH 104 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~ 104 (138)
.++.+|+|+|||..+...+......+.+++|+.-... ..+..+.+.
T Consensus 26 ~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~ 71 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMA 71 (247)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHH
Confidence 3599999999999988666666667889999875433 344444443
No 91
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.90 E-value=0.014 Score=50.66 Aligned_cols=53 Identities=13% Similarity=0.084 Sum_probs=44.8
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHc-C---CcEEEEechHHHHHHHHHHHHHhcC
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRD-K---QRVIYTSSLKALSNQKYRELHKEFK 108 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~-~---~rviyv~P~kaLv~Q~~~~l~~~f~ 108 (138)
++.+|.|+.|||||.+...-+.+.+.. + .+++++..|+..+.++.+++.+.++
T Consensus 16 ~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 16 GPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp SEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 566799999999999988777777654 3 6899999999999999999988653
No 92
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.82 E-value=0.01 Score=43.22 Aligned_cols=43 Identities=12% Similarity=-0.037 Sum_probs=27.9
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQK 99 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~ 99 (138)
.+.++++|+|+|||.++.........++.+++|+. ...+..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~-~~~~~~~~ 97 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY-VPELFREL 97 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE-HHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-hHHHHHHH
Confidence 45669999999999987644444434566776654 33444443
No 93
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.73 E-value=0.012 Score=45.14 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=30.0
Q ss_pred eEECcCCCchHHHHHHHHHHHHHcCCcEEEEechH
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLK 93 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~k 93 (138)
++++|+|+|||..++..+.++..+|.+++++-|..
T Consensus 16 litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 16 FITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 48999999999999888877777899999997765
No 94
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=95.73 E-value=0.017 Score=50.58 Aligned_cols=48 Identities=25% Similarity=0.249 Sum_probs=39.7
Q ss_pred ceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcC
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFK 108 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~ 108 (138)
..+.+-||||||++....+.+ .++.+|+|+|.+.++.|.+.+|+..|.
T Consensus 35 ~~l~g~~gs~k~~~~a~~~~~---~~~~~lvv~~~~~~A~~l~~el~~~~~ 82 (661)
T 2d7d_A 35 QTLLGATGTGKTFTVSNLIKE---VNKPTLVIAHNKTLAGQLYSEFKEFFP 82 (661)
T ss_dssp EEEEECTTSCHHHHHHHHHHH---HCCCEEEECSSHHHHHHHHHHHHHHCT
T ss_pred EEEECcCCcHHHHHHHHHHHH---hCCCEEEEECCHHHHHHHHHHHHHHcC
Confidence 468899999999876544432 267899999999999999999999765
No 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.69 E-value=0.021 Score=49.33 Aligned_cols=47 Identities=13% Similarity=-0.060 Sum_probs=36.7
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRE 102 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~ 102 (138)
+..+|.+|.|+|||.+....+......|.++++++||...+.+..+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhh
Confidence 45669999999999887654444445689999999999888877654
No 96
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.65 E-value=0.015 Score=41.62 Aligned_cols=47 Identities=17% Similarity=0.092 Sum_probs=29.8
Q ss_pred CCceEECcCCCchHHHHHHHHHHHH-HcCCcEEEEechHHHHHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAF-RDKQRVIYTSSLKALSNQKYREL 103 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l-~~~~rviyv~P~kaLv~Q~~~~l 103 (138)
...++.+|+|+|||..+........ ..|..++|+ ....+.++....+
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~-~~~~~~~~~~~~~ 86 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF-DTKDLIFRLKHLM 86 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE-EHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE-EHHHHHHHHHHHh
Confidence 3456999999999998865444433 346666664 4555555554443
No 97
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.56 E-value=0.016 Score=42.94 Aligned_cols=46 Identities=20% Similarity=0.101 Sum_probs=31.0
Q ss_pred ceEECcCCCchHHHHHHHHHHH-HHcCCcEEEEechHHHHHHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMA-FRDKQRVIYTSSLKALSNQKYRELH 104 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~-l~~~~rviyv~P~kaLv~Q~~~~l~ 104 (138)
.+++|++|+|||..++..+.++ ...+..++|+.-..+ .++..+.+.
T Consensus 33 ~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~-~~~~~~~~~ 79 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER-ARDLRREMA 79 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC-HHHHHHHHH
Confidence 3499999999999998655554 445788888874422 344444443
No 98
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.56 E-value=0.014 Score=46.36 Aligned_cols=43 Identities=7% Similarity=-0.123 Sum_probs=29.7
Q ss_pred CCceEECcCCCchHHHHHHHHHHHH-HcCCcEEEEechHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAF-RDKQRVIYTSSLKALSNQK 99 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l-~~~~rviyv~P~kaLv~Q~ 99 (138)
.+.++.||+|+|||.++......+. ..|.+++|+.- -.|..+.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~-~~l~~~l 196 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF-PSFAIDV 196 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH-HHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH-HHHHHHH
Confidence 4567999999999999875555555 56777776643 2444443
No 99
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.48 E-value=0.029 Score=49.39 Aligned_cols=54 Identities=11% Similarity=0.057 Sum_probs=45.7
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHc-C---CcEEEEechHHHHHHHHHHHHHhcC
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRD-K---QRVIYTSSLKALSNQKYRELHKEFK 108 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~-~---~rviyv~P~kaLv~Q~~~~l~~~f~ 108 (138)
.++.+|.|+.|||||.+...-+.+.+.. + .+++++..|+..+.++.+++.+.++
T Consensus 24 ~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 24 EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred CCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 3567799999999999998888877764 3 6899999999999999999988653
No 100
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.46 E-value=0.016 Score=42.61 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=28.8
Q ss_pred eEECcCCCchHHHHHHHHHHHHHcCCcEEEEechH
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLK 93 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~k 93 (138)
++++|.|+|||..++-.+.++...|.+++++.|..
T Consensus 7 vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 7 VITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 48999999999998777766667788999988874
No 101
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.46 E-value=0.023 Score=53.09 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=45.0
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHcC------CcEEEEechHHHHHHHHHHHHHhc
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRDK------QRVIYTSSLKALSNQKYRELHKEF 107 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~~------~rviyv~P~kaLv~Q~~~~l~~~f 107 (138)
..+.+|.|.-|||||.+...-+.+.+.++ .+++++.+|++.++++.+++.+.+
T Consensus 23 ~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 23 GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 35778999999999999887777777653 489999999999999999998855
No 102
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.34 E-value=0.02 Score=42.77 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=29.7
Q ss_pred eEECcCCCchHHHHHHHHHHHHHcCCcEEEEechH
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLK 93 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~k 93 (138)
++++|.|||||..++-.+.++..+|.+++++-|.+
T Consensus 12 v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 12 VIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 38999999999988877777777899999998874
No 103
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.26 E-value=0.023 Score=41.53 Aligned_cols=36 Identities=28% Similarity=0.227 Sum_probs=24.9
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSS 91 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P 91 (138)
.+.+++||+|+|||.++..........+.+++|+..
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~ 88 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL 88 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 456799999999999886544444344566666543
No 104
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=95.03 E-value=0.027 Score=46.05 Aligned_cols=43 Identities=9% Similarity=0.089 Sum_probs=35.2
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHH
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSN 97 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~ 97 (138)
..+.++.||||||||......+.+.+..|..++++=|--.+..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 4788999999999999865566677777889999988877754
No 105
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.02 E-value=0.03 Score=40.78 Aligned_cols=34 Identities=32% Similarity=0.327 Sum_probs=25.3
Q ss_pred ceEECcCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSS 91 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P 91 (138)
.++.+|+|+|||..+...+......+.+++|+.-
T Consensus 26 ~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 26 IALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 3499999999999887555444456778888763
No 106
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.78 E-value=0.089 Score=41.09 Aligned_cols=43 Identities=26% Similarity=0.179 Sum_probs=28.6
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQK 99 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~ 99 (138)
.+.+++||+|+|||.++..........+.+++|+... .+..+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~-~~~~~~ 80 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD-DFAQAM 80 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH-HHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH-HHHHHH
Confidence 3567999999999998765444444447778777543 334433
No 107
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.57 E-value=0.045 Score=44.27 Aligned_cols=49 Identities=18% Similarity=0.292 Sum_probs=35.8
Q ss_pred CCCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcC
Q 042424 55 TTHGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFK 108 (138)
Q Consensus 55 ~~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~ 108 (138)
+.+.++.+|||||||...-..+.+....|.+++++=|..+ +..+.+.++
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~-----~~~~~~~~g 83 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE-----YKEMCRKLG 83 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC-----SHHHHHHTT
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC-----HHHHHHHcC
Confidence 4678899999999999887666666667888888877644 334444454
No 108
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.44 E-value=0.053 Score=37.68 Aligned_cols=23 Identities=26% Similarity=0.133 Sum_probs=17.6
Q ss_pred CCceEECcCCCchHHHHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAM 78 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~ 78 (138)
.+.+++||+|+|||.++......
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999988644443
No 109
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.43 E-value=0.035 Score=39.47 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=23.8
Q ss_pred CceEECcCCCchHHHHHHHHHHHHHcCCcEEEEe
Q 042424 57 HGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTS 90 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~ 90 (138)
...+.+|+|+|||..+..........|.+++|+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 3459999999999887654443334566777764
No 110
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.37 E-value=0.046 Score=43.35 Aligned_cols=35 Identities=20% Similarity=-0.037 Sum_probs=28.0
Q ss_pred ceEECcCCCchHHHHHHHHHHHHHcCCcEEEEech
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSL 92 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~ 92 (138)
.+|+|++|+|||..++..+..+..+|.+++|++--
T Consensus 71 ~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 71 VLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 44999999999999986666666667889998743
No 111
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.36 E-value=0.028 Score=46.09 Aligned_cols=39 Identities=13% Similarity=0.116 Sum_probs=32.3
Q ss_pred ceEECcCCCchHHHHHHHHHHHHHc--CCcEEEEechHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFRD--KQRVIYTSSLKALS 96 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~~--~~rviyv~P~kaLv 96 (138)
..|.+|.|+|||.+++.++..+.+. |.+++|+..-.++-
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhh
Confidence 3599999999999999888877775 78999988766654
No 112
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.32 E-value=0.064 Score=42.48 Aligned_cols=46 Identities=11% Similarity=0.198 Sum_probs=28.8
Q ss_pred ceEECcCCCchHHHHH-HHHHHHHHcCCcEEEEe--chHHHHHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAE-YAIAMAFRDKQRVIYTS--SLKALSNQKYREL 103 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~-~ai~~~l~~~~rviyv~--P~kaLv~Q~~~~l 103 (138)
.++.+|+|+|||..+. ++...+..+|++++++. +.++-+.++.+.+
T Consensus 108 i~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~ 156 (296)
T 2px0_A 108 IVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTY 156 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHH
Confidence 4499999999998886 44443333577887764 3344444444443
No 113
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.28 E-value=0.046 Score=39.73 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=24.3
Q ss_pred ceEECcCCCchHHHHHHHHHHHHHcCCcEEEEech
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSL 92 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~ 92 (138)
.++.+|+|+|||..+...+. ..+.+++|+.-.
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~ 54 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGL---LSGKKVAYVDTE 54 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHH---HHCSEEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHH---HcCCcEEEEECC
Confidence 34999999999998874443 457888888643
No 114
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.12 E-value=0.095 Score=44.27 Aligned_cols=50 Identities=12% Similarity=0.069 Sum_probs=35.6
Q ss_pred ceEECcCCCchHHHHHHHHHHHHHcCCcEEEEe--chHHHHHHHHHHHHHhc
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTS--SLKALSNQKYRELHKEF 107 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~--P~kaLv~Q~~~~l~~~f 107 (138)
.++++++|+|||..+.........+|.+++++. |+++-+.++.+.+.+..
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~ 154 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRY 154 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGG
T ss_pred EEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhc
Confidence 349999999999998743333335688888777 66776666666666644
No 115
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.10 E-value=0.045 Score=44.87 Aligned_cols=37 Identities=27% Similarity=0.197 Sum_probs=29.7
Q ss_pred eEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHH
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKAL 95 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaL 95 (138)
.|.+|.|+|||..++..+..+...+.+++|+..-.++
T Consensus 65 ~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 65 EIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL 101 (356)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 4999999999999987776666678889998765544
No 116
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=94.05 E-value=0.39 Score=40.77 Aligned_cols=52 Identities=10% Similarity=-0.073 Sum_probs=40.4
Q ss_pred CceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcC-ceE
Q 042424 57 HGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFK-DVG 111 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~-~v~ 111 (138)
+..+.+-|||||+++....+. ..++.+|+|+|....+.|.+++|+..++ +|.
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~---~~~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~ 68 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAE---RHAGPVVLIAPDMQNALRLHDEISQFTDQMVM 68 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHH---HSSSCEEEEESSHHHHHHHHHHHHHTCSSCEE
T ss_pred eEEEeCCCchHHHHHHHHHHH---HhCCCEEEEeCCHHHHHHHHHHHHhhCCCcEE
Confidence 456999999999976543332 2367899999999999999999998655 443
No 117
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.01 E-value=0.044 Score=44.74 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=28.8
Q ss_pred ceEECcCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSS 91 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P 91 (138)
.+|.+|.|+|||.+++..+..+...|.+++|+.-
T Consensus 66 i~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 66 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4599999999999998777777677889999876
No 118
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.97 E-value=0.051 Score=37.89 Aligned_cols=23 Identities=26% Similarity=0.106 Sum_probs=17.7
Q ss_pred CCceEECcCCCchHHHHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAM 78 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~ 78 (138)
.+.++++|+|+|||.++......
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45579999999999988654443
No 119
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.96 E-value=0.058 Score=43.76 Aligned_cols=35 Identities=26% Similarity=0.172 Sum_probs=29.0
Q ss_pred ceEECcCCCchHHHHHHHHHHHHHcCCcEEEEech
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSL 92 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~ 92 (138)
.+|.+|.|+|||..++..+..+...|.+++|+.--
T Consensus 64 v~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 64 IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 44999999999999987777777778899988744
No 120
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.58 E-value=0.077 Score=43.47 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=28.7
Q ss_pred ceEECcCCCchHHHHHHHHHHHHHcCCcEEEEech
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSL 92 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~ 92 (138)
.+|.+|.|+|||..++..+..+...|.+++|+..-
T Consensus 77 i~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 77 TEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 44999999999999987777766778889888754
No 121
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.48 E-value=0.15 Score=42.79 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=33.4
Q ss_pred ceEECcCCCchHHHHHHHHHHHHHcCCcEEEEe--chHHHHHHHHHHHHHhc
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTS--SLKALSNQKYRELHKEF 107 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~--P~kaLv~Q~~~~l~~~f 107 (138)
.++++|+|+|||..+.........+|++++++. ++++-+.++.+.+.+..
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~ 151 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQI 151 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhc
Confidence 348999999999988633333335688887766 55655555566665543
No 122
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.47 E-value=0.05 Score=43.16 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=27.8
Q ss_pred ceEECcCCCchHHHHHHHHHHHHHc------CCcEEEEechHH
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFRD------KQRVIYTSSLKA 94 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~~------~~rviyv~P~ka 94 (138)
.++.+|+|+|||.++...+..+... +.+++|+.--.+
T Consensus 110 ~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 110 TEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred EEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 4499999999999998666554333 678999876554
No 123
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.46 E-value=0.075 Score=44.44 Aligned_cols=35 Identities=20% Similarity=-0.037 Sum_probs=28.4
Q ss_pred ceEECcCCCchHHHHHHHHHHHHHcCCcEEEEech
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSL 92 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~ 92 (138)
.+|.|++|+|||..++..+.++..+|.+++|++--
T Consensus 200 iiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 200 VLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 44999999999999986666666668899998754
No 124
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.40 E-value=0.095 Score=39.70 Aligned_cols=33 Identities=9% Similarity=0.156 Sum_probs=29.8
Q ss_pred EECcCCCchHHHHHHHHHHHHHcCCcEEEEech
Q 042424 60 LTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSL 92 (138)
Q Consensus 60 l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~ 92 (138)
+++|.|||||.-.+.++.+....+.+++|+-|.
T Consensus 25 iyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 25 ILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 999999999988888888887889999999887
No 125
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.20 E-value=0.073 Score=45.10 Aligned_cols=41 Identities=10% Similarity=-0.063 Sum_probs=32.2
Q ss_pred EECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHH
Q 042424 60 LTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHK 105 (138)
Q Consensus 60 l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~ 105 (138)
+.|+.|+|||..... .+. ..+.++++|+++++++..+.+.+
T Consensus 166 I~G~aGsGKTt~I~~----~~~-~~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 166 VDGVPGCGKTKEILS----RVN-FEEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEECTTSCHHHHHHH----HCC-TTTCEEEESCHHHHHHHHHHHTT
T ss_pred EEcCCCCCHHHHHHH----Hhc-cCCeEEEeCCHHHHHHHHHHhhh
Confidence 999999999975432 222 36789999999999988888754
No 126
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.20 E-value=0.12 Score=38.20 Aligned_cols=34 Identities=21% Similarity=0.088 Sum_probs=23.6
Q ss_pred ceEECcCCCchHHHHHHHHHHHH-HcCCcEEEEec
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAF-RDKQRVIYTSS 91 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l-~~~~rviyv~P 91 (138)
..|.+|+|||||..+...+...+ ..+..++|+.-
T Consensus 33 ~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 33 VLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 34999999999998864443333 55677777654
No 127
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.15 E-value=0.2 Score=39.41 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=23.9
Q ss_pred CceEECcCCCchHHHHHHHHHHHHHc--------CCcEEEEe
Q 042424 57 HGTLTNPVYNGKTAVAEYAIAMAFRD--------KQRVIYTS 90 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ai~~~l~~--------~~rviyv~ 90 (138)
..+|++|+|+|||.++.......... +..++++.
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 45699999999999886544443333 66677775
No 128
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.12 E-value=0.074 Score=39.20 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=24.4
Q ss_pred ceEECcCCCchHHHHHHHHHHHHH------cCCcEEEEech
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFR------DKQRVIYTSSL 92 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~------~~~rviyv~P~ 92 (138)
..|.+|+|+|||..+...+..++. .+..++|+.-.
T Consensus 27 ~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 27 TEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred EEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 349999999999998755544322 25678887643
No 129
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.01 E-value=0.13 Score=39.42 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=29.4
Q ss_pred EECcCCCchHHHHHHHHHHHHHcCCcEEEEechHH
Q 042424 60 LTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKA 94 (138)
Q Consensus 60 l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~ka 94 (138)
+++|-|||||..++-.+.++...|.+++++-|.+.
T Consensus 33 itG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 33 ICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp EECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred EECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 89999999999888777777788999999988864
No 130
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.00 E-value=0.073 Score=42.71 Aligned_cols=37 Identities=14% Similarity=0.133 Sum_probs=27.7
Q ss_pred ceEECcCCCchHHHHHHHHHHHHH------cCCcEEEEechHH
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFR------DKQRVIYTSSLKA 94 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~------~~~rviyv~P~ka 94 (138)
..|.+|.|+|||..+...+..+.. .+.+++|+.-..+
T Consensus 125 ~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 125 TEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp EEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 349999999999999866655433 3678999876554
No 131
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.84 E-value=0.056 Score=37.65 Aligned_cols=20 Identities=20% Similarity=0.081 Sum_probs=16.6
Q ss_pred CCceEECcCCCchHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~a 75 (138)
.+.++.+|+|+|||.+|...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i 44 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYL 44 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHH
Confidence 56779999999999988643
No 132
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.78 E-value=0.14 Score=38.77 Aligned_cols=34 Identities=21% Similarity=-0.065 Sum_probs=29.5
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEE
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYT 89 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv 89 (138)
++.++..+.|.|||.+|+-..++++.+|.|++++
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v 62 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV 62 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4556999999999999997777788899999998
No 133
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.71 E-value=0.23 Score=41.15 Aligned_cols=45 Identities=20% Similarity=0.129 Sum_probs=28.9
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHc--CCcEEEEechHHHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRD--KQRVIYTSSLKALSNQKYR 101 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~--~~rviyv~P~kaLv~Q~~~ 101 (138)
.+.++.||+|+|||..+.......... +.+++|+... .+.++...
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~-~~~~~~~~ 177 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE-KFLNDLVD 177 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH-HHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH-HHHHHHHH
Confidence 456799999999999876443333333 6777777544 34444443
No 134
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.69 E-value=0.12 Score=41.91 Aligned_cols=35 Identities=20% Similarity=0.084 Sum_probs=28.1
Q ss_pred ceEECcCCCchHHHHHHHHHHHHHcCCcEEEEech
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSL 92 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~ 92 (138)
.+|.|++|+|||..++..+..+...|.+++|++--
T Consensus 49 iiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 49 VIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 34999999999999986666655678899998754
No 135
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.66 E-value=0.3 Score=38.90 Aligned_cols=46 Identities=13% Similarity=0.189 Sum_probs=28.0
Q ss_pred eEECcCCCchHHHHH-HHHHHHHHcCCcEEEEe--chHHHHHHHHHHHHH
Q 042424 59 TLTNPVYNGKTAVAE-YAIAMAFRDKQRVIYTS--SLKALSNQKYRELHK 105 (138)
Q Consensus 59 ~l~aPTGsGKTlva~-~ai~~~l~~~~rviyv~--P~kaLv~Q~~~~l~~ 105 (138)
++++|+|+|||..+. +|.... ..|++++++. ++++-+.++.+.|.+
T Consensus 108 ~ivG~~GsGKTTl~~~LA~~l~-~~g~kV~lv~~D~~r~~a~eqL~~~~~ 156 (306)
T 1vma_A 108 MVVGVNGTGKTTSCGKLAKMFV-DEGKSVVLAAADTFRAAAIEQLKIWGE 156 (306)
T ss_dssp EEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECTTCHHHHHHHHHHHH
T ss_pred EEEcCCCChHHHHHHHHHHHHH-hcCCEEEEEccccccHHHHHHHHHHHH
Confidence 499999999998875 443332 4577776654 334433344444444
No 136
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.28 E-value=0.087 Score=39.89 Aligned_cols=20 Identities=15% Similarity=0.039 Sum_probs=16.2
Q ss_pred CCceEECcCCCchHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~a 75 (138)
.+.++.+|+|+|||.++...
T Consensus 30 ~~vll~G~~GtGKt~la~~i 49 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRL 49 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHH
Confidence 45679999999999877543
No 137
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.28 E-value=0.15 Score=42.19 Aligned_cols=35 Identities=23% Similarity=-0.046 Sum_probs=27.1
Q ss_pred ceEECcCCCchHHHHHHHHHHHHH-cCCcEEEEech
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFR-DKQRVIYTSSL 92 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~-~~~rviyv~P~ 92 (138)
.+|.|++|+|||..++..+..+.. .|.+++|+.--
T Consensus 203 ~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 203 NIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 349999999999999865555554 47889998754
No 138
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.24 E-value=0.17 Score=42.04 Aligned_cols=35 Identities=20% Similarity=-0.030 Sum_probs=26.9
Q ss_pred ceEECcCCCchHHHHHHHHHHHHH-cCCcEEEEech
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFR-DKQRVIYTSSL 92 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~-~~~rviyv~P~ 92 (138)
.+|.|++|+|||..+...+..... .|.+++|+.--
T Consensus 206 iiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 206 IIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 449999999999999855555544 57789998743
No 139
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.21 E-value=0.11 Score=39.80 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=21.1
Q ss_pred CceEECcCCCchHHHHHHHHHHHHHcCCcEEEE
Q 042424 57 HGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYT 89 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv 89 (138)
+.++.+|+|+|||.++..........+..++++
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~ 81 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 81 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCCcceEEe
Confidence 456999999999998864333322233444444
No 140
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.14 E-value=0.18 Score=38.93 Aligned_cols=33 Identities=12% Similarity=-0.093 Sum_probs=23.4
Q ss_pred eEECcCCCchHHHHHHHHHHHHH-cCCcEEEEec
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFR-DKQRVIYTSS 91 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~-~~~rviyv~P 91 (138)
+|.+|+|+|||..+...+..... .|.+++|+.-
T Consensus 39 ~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 39 MVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 49999999999988644333333 3668888753
No 141
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.01 E-value=0.11 Score=50.60 Aligned_cols=40 Identities=25% Similarity=0.294 Sum_probs=35.8
Q ss_pred EECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHH
Q 042424 60 LTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQK 99 (138)
Q Consensus 60 l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~ 99 (138)
+.+|.|||||.+++.++..+.+.|.+++|+.+-.+|--..
T Consensus 1436 i~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~ 1475 (1706)
T 3cmw_A 1436 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY 1475 (1706)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH
T ss_pred EEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH
Confidence 9999999999999999999988999999999977665554
No 142
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.82 E-value=0.2 Score=38.79 Aligned_cols=33 Identities=24% Similarity=0.075 Sum_probs=24.3
Q ss_pred CceEECcCCCchHHHHHHHHHHHHHcCCcEEEE
Q 042424 57 HGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYT 89 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv 89 (138)
+.++.++.|.|||..+.........+|.+++++
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~ 40 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAG 40 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEE
Confidence 345999999999999875555555678776543
No 143
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=91.77 E-value=0.093 Score=39.32 Aligned_cols=34 Identities=18% Similarity=0.046 Sum_probs=22.0
Q ss_pred eEECcCCCchHHHHHHHHHHHH-----HcCCcEEEEech
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAF-----RDKQRVIYTSSL 92 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l-----~~~~rviyv~P~ 92 (138)
+++|+.|||||..+...+.... +.|.|.+|++..
T Consensus 9 l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~ 47 (199)
T 2r2a_A 9 LITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNI 47 (199)
T ss_dssp EEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecC
Confidence 4999999999998864333322 334366665543
No 144
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.74 E-value=0.19 Score=38.52 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=22.9
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHc----CCcEEEEec
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRD----KQRVIYTSS 91 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~----~~rviyv~P 91 (138)
.+.++.+|+|+|||.++.......-.. ...++++.+
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 356799999999999886433332222 235666554
No 145
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=91.65 E-value=0.36 Score=37.61 Aligned_cols=35 Identities=26% Similarity=0.231 Sum_probs=23.4
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHc------CCcEEEEe
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRD------KQRVIYTS 90 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~------~~rviyv~ 90 (138)
.+.+|+||+|+|||.++.......... +..++++-
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN 85 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence 456699999999999886544433222 45566664
No 146
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.64 E-value=0.11 Score=43.60 Aligned_cols=35 Identities=6% Similarity=-0.269 Sum_probs=28.0
Q ss_pred ceEECcCCCchHHHHHHHHHHHHHc-CCcEEEEech
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFRD-KQRVIYTSSL 92 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~~-~~rviyv~P~ 92 (138)
.+|.+++|+|||..++..+.++... |.+++|+.--
T Consensus 245 ~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 245 IMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred EEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 3499999999999998666666555 8899998754
No 147
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.62 E-value=0.12 Score=51.11 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=32.2
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechH
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLK 93 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~k 93 (138)
.+.++++|+|+|||.+|...+..+..+|.+++|+..--
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1465 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc
Confidence 45669999999999999877777778899999998663
No 148
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.29 E-value=0.24 Score=38.39 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=13.5
Q ss_pred ceEECcCCCchHHHHH
Q 042424 58 GTLTNPVYNGKTAVAE 73 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~ 73 (138)
.++++|||||||....
T Consensus 28 v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 28 ILVTGPTGSGKSTTIA 43 (261)
T ss_dssp EEEECSTTCSHHHHHH
T ss_pred EEEECCCCccHHHHHH
Confidence 3599999999998764
No 149
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.29 E-value=0.12 Score=36.62 Aligned_cols=22 Identities=32% Similarity=0.200 Sum_probs=17.0
Q ss_pred CceEECcCCCchHHHHHHHHHH
Q 042424 57 HGTLTNPVYNGKTAVAEYAIAM 78 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ai~~ 78 (138)
+.+++||+|+|||.++......
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999988644443
No 150
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.21 E-value=0.36 Score=36.98 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=24.3
Q ss_pred ceEECcCCCchHHHHHHHHHHHHHc-----------CCcEEEEechH
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFRD-----------KQRVIYTSSLK 93 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~~-----------~~rviyv~P~k 93 (138)
.+|.+|.|+|||..+...+.. +.. +.+++|+.-..
T Consensus 33 ~~i~G~~GsGKTtl~~~l~~~-~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 33 GALVSPGGAGKSMLALQLAAQ-IAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp EEEEESTTSSHHHHHHHHHHH-HHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred EEEEcCCCCCHHHHHHHHHHH-HhcCCCcCCCccCCCccEEEEECCC
Confidence 349999999999998754443 234 35788876443
No 151
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=91.18 E-value=0.74 Score=33.31 Aligned_cols=65 Identities=15% Similarity=0.023 Sum_probs=40.9
Q ss_pred CCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCcCCC-----------CCCEEEecH
Q 042424 65 YNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLSP-----------NASCLVMTT 130 (138)
Q Consensus 65 GsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~~~~-----------~~~IiVtTp 130 (138)
.+.|... +.-++.....+.++|+.++++.-++..++.|++.--.+..++|+..... ..+|+|+|.
T Consensus 29 ~~~K~~~-L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~ 104 (185)
T 2jgn_A 29 ESDKRSF-LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 104 (185)
T ss_dssp GGGHHHH-HHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC
T ss_pred cHHHHHH-HHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 4566432 3333332234688999999999999999999873227888888765432 678999984
No 152
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=90.81 E-value=0.39 Score=44.39 Aligned_cols=46 Identities=22% Similarity=0.160 Sum_probs=34.6
Q ss_pred eEECcCCCchHHHHHHHHHHHHHc---CCcEEEEechHHHHHHHHHHHHH
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFRD---KQRVIYTSSLKALSNQKYRELHK 105 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~~---~~rviyv~P~kaLv~Q~~~~l~~ 105 (138)
+|.|..|||||.+...-|.+.+.+ +.+++++||... .-++.+++.+
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~-TFt~~~rl~~ 53 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM-TFLMEYELAK 53 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG-HHHHHHHHTC
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc-cHHHHHHHHH
Confidence 588999999999999888877765 478999999863 3334444444
No 153
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=90.80 E-value=0.1 Score=38.91 Aligned_cols=43 Identities=21% Similarity=0.321 Sum_probs=27.4
Q ss_pred eEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHH
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHK 105 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~ 105 (138)
+|.+++|||||..|+.... . +.+++|++.-.+.-.++.+++..
T Consensus 3 lV~Gg~~SGKS~~A~~la~---~-~~~~~yiaT~~~~d~e~~~rI~~ 45 (180)
T 1c9k_A 3 LVTGGARSGKSRHAEALIG---D-APQVLYIATSQILDDEMAARIQH 45 (180)
T ss_dssp EEEECTTSSHHHHHHHHHC---S-CSSEEEEECCCC------CHHHH
T ss_pred EEECCCCCcHHHHHHHHHh---c-CCCeEEEecCCCCCHHHHHHHHH
Confidence 5899999999988774332 2 67899999876655555555443
No 154
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.77 E-value=0.11 Score=36.09 Aligned_cols=18 Identities=22% Similarity=0.004 Sum_probs=15.2
Q ss_pred CCceEECcCCCchHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAE 73 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~ 73 (138)
.+.++.+|+|+|||.+|.
T Consensus 28 ~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp SCEEEEEETTCCHHHHHG
T ss_pred CcEEEECCCCccHHHHHH
Confidence 566799999999998764
No 155
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.75 E-value=0.28 Score=36.50 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=21.7
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSS 91 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P 91 (138)
.+.++.+|+|+|||.++...... + +...+++..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~-~--~~~~~~~~~ 72 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE-A--QVPFLAMAG 72 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH-H--TCCEEEEET
T ss_pred ceEEEECCCCCCHHHHHHHHHHH-h--CCCEEEech
Confidence 45679999999999987643322 2 455555443
No 156
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=90.56 E-value=0.33 Score=38.12 Aligned_cols=33 Identities=21% Similarity=0.137 Sum_probs=22.3
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSS 91 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P 91 (138)
.+.++.+|+|+|||.++...... .+...+++..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~---~~~~~~~v~~ 84 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE---ANSTFFSVSS 84 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH---HTCEEEEEEH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH---HCCCEEEEch
Confidence 45679999999999988643322 2555555543
No 157
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.50 E-value=0.31 Score=37.95 Aligned_cols=35 Identities=11% Similarity=0.175 Sum_probs=30.1
Q ss_pred EECcCCCchHHHHHHHHHHHHHcCCcEEEEechHH
Q 042424 60 LTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKA 94 (138)
Q Consensus 60 l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~ka 94 (138)
+++|-|||||..++-.+.++...|.+++++-|.+.
T Consensus 24 ~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D 58 (234)
T 2orv_A 24 ILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD 58 (234)
T ss_dssp EECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred EECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC
Confidence 88999999999888777777778999999988753
No 158
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=90.40 E-value=0.34 Score=36.81 Aligned_cols=32 Identities=19% Similarity=0.126 Sum_probs=21.5
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEe
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTS 90 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~ 90 (138)
.+.++.+|+|+|||.++..... .+ +...+++.
T Consensus 51 ~~vll~G~~GtGKT~la~~la~-~l--~~~~~~i~ 82 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK-LA--NAPFIKVE 82 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH-HH--TCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHH-Hh--CCCEEEEc
Confidence 4567999999999998864332 22 44555543
No 159
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=90.28 E-value=0.79 Score=32.17 Aligned_cols=48 Identities=21% Similarity=0.175 Sum_probs=39.0
Q ss_pred cCCcEEEEechHHHHHHHHHHHHHhcC-ceEEEecCCcC-----------CCCCCEEEecH
Q 042424 82 DKQRVIYTSSLKALSNQKYRELHKEFK-DVGLMTGDVTL-----------SPNASCLVMTT 130 (138)
Q Consensus 82 ~~~rviyv~P~kaLv~Q~~~~l~~~f~-~v~~~tGd~~~-----------~~~~~IiVtTp 130 (138)
.+.++|+.++++.-+++.++.|.+ .+ .+..++|+... +...+|+|+|.
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~-~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~ 93 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDD-LGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD 93 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG
T ss_pred CCCcEEEEECCHHHHHHHHHHHHH-cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 467899999999999999999988 44 88889988643 22678999984
No 160
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.26 E-value=0.14 Score=41.83 Aligned_cols=17 Identities=18% Similarity=0.087 Sum_probs=14.3
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
.+|++|||+|||.++..
T Consensus 43 IvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 43 LVLMGATGTGKSRLSID 59 (339)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45999999999988753
No 161
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.22 E-value=0.22 Score=36.19 Aligned_cols=35 Identities=20% Similarity=0.149 Sum_probs=22.9
Q ss_pred eEECcCCCchHHHHHHHHHHHHH------cCCcEEEEechH
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFR------DKQRVIYTSSLK 93 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~------~~~rviyv~P~k 93 (138)
.|.+|+|||||..+...+..... .+.+++|+....
T Consensus 29 ~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 29 EVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp EEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred EEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 49999999999887644332222 145677776543
No 162
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.12 E-value=0.33 Score=39.47 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=19.3
Q ss_pred CceEECcCCCchHHHHHHHHHHHHH-c-CCcEEE
Q 042424 57 HGTLTNPVYNGKTAVAEYAIAMAFR-D-KQRVIY 88 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ai~~~l~-~-~~rviy 88 (138)
..++++|||||||.... ++...+. . +.+++.
T Consensus 125 ~i~I~GptGSGKTTlL~-~l~g~~~~~~~~~i~t 157 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLA-AMLDYLNNTKYHHILT 157 (356)
T ss_dssp EEEEECSTTSCHHHHHH-HHHHHHHHHCCCEEEE
T ss_pred EEEEECCCCCCHHHHHH-HHHhcccCCCCcEEEE
Confidence 34599999999998754 3333333 2 455544
No 163
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.11 E-value=0.26 Score=48.71 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=32.2
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEech
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSL 92 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~ 92 (138)
.+.++++|+|+|||..+...+..++++|.+++|+.=-
T Consensus 1082 ~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~e 1118 (2050)
T 3cmu_A 1082 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 1118 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcc
Confidence 4567999999999999998888888889999998644
No 164
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.06 E-value=0.33 Score=39.45 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=14.4
Q ss_pred CceEECcCCCchHHHHHH
Q 042424 57 HGTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ 74 (138)
..++++|||||||.....
T Consensus 138 ~i~ivG~~GsGKTTll~~ 155 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIAS 155 (372)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 345999999999987643
No 165
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.02 E-value=0.38 Score=38.43 Aligned_cols=57 Identities=23% Similarity=0.194 Sum_probs=32.5
Q ss_pred eEECcCCCchHHHHH-HHHHHHHHcCCcEEEEe--chHHHHHHHHHHHHHh--cCceEEE-ecC
Q 042424 59 TLTNPVYNGKTAVAE-YAIAMAFRDKQRVIYTS--SLKALSNQKYRELHKE--FKDVGLM-TGD 116 (138)
Q Consensus 59 ~l~aPTGsGKTlva~-~ai~~~l~~~~rviyv~--P~kaLv~Q~~~~l~~~--f~~v~~~-tGd 116 (138)
.+++|+|+|||..+. +|...+ ..|++++++- +.+.-+.+....|.+. ..++.++ .+.
T Consensus 109 ~ivG~~G~GKTT~~~~LA~~l~-~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 109 MLVGVNGTGKTTSLAKMANYYA-ELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp EEESSTTSSHHHHHHHHHHHHH-HTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred EEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 488999999998875 444332 4577877763 2333333333444321 1256666 443
No 166
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=89.95 E-value=0.46 Score=33.82 Aligned_cols=32 Identities=25% Similarity=0.124 Sum_probs=21.5
Q ss_pred ceEECcCCCchHHHHHHHHHHHHHcCCcEEEE
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYT 89 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv 89 (138)
.+++++.|||||.++.......-..|.++.++
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 34999999999998864333322346666555
No 167
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.83 E-value=0.69 Score=32.42 Aligned_cols=31 Identities=16% Similarity=0.041 Sum_probs=20.7
Q ss_pred ceEECcCCCchHHHHHHHHHHHHH-cCCcEEEE
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFR-DKQRVIYT 89 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~-~~~rviyv 89 (138)
.+++++.|||||.++..... .+. .|..+.++
T Consensus 4 I~i~G~~GsGKsT~~~~L~~-~l~~~g~~~~~~ 35 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKE-ILDNQGINNKII 35 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHH-HHHTTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHhcCceEEEE
Confidence 35999999999998864433 233 34455555
No 168
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=89.79 E-value=0.42 Score=38.50 Aligned_cols=33 Identities=27% Similarity=0.211 Sum_probs=22.6
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSS 91 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P 91 (138)
.+.+|.+|+|+|||.++..... ..+..++++..
T Consensus 149 ~~vLL~GppGtGKT~la~aia~---~~~~~~~~v~~ 181 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAA---ESNATFFNISA 181 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHH---HTTCEEEEECS
T ss_pred ceEEEECCCCCCHHHHHHHHHH---hhcCcEEEeeH
Confidence 4677999999999998864422 23555555544
No 169
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=89.76 E-value=0.22 Score=38.10 Aligned_cols=20 Identities=35% Similarity=0.242 Sum_probs=16.3
Q ss_pred CCceEECcCCCchHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~a 75 (138)
.+.++.||+|+|||.++...
T Consensus 55 ~~vll~Gp~GtGKT~la~~l 74 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAV 74 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHH
Confidence 45679999999999987643
No 170
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=89.75 E-value=0.3 Score=38.29 Aligned_cols=34 Identities=21% Similarity=0.202 Sum_probs=22.9
Q ss_pred CceEECcCCCchHHHHHHHHHHHHHc-CCcEEEEe
Q 042424 57 HGTLTNPVYNGKTAVAEYAIAMAFRD-KQRVIYTS 90 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ai~~~l~~-~~rviyv~ 90 (138)
..+|+||+|+|||.++.......... +..++++-
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 45699999999999886444332223 45677765
No 171
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.73 E-value=0.37 Score=37.47 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=23.7
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHc---CCcEEEEe
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRD---KQRVIYTS 90 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~---~~rviyv~ 90 (138)
...+|.||.|+|||.++.......... +..++++.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 345699999999999886544433233 55667665
No 172
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.72 E-value=0.32 Score=47.35 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=31.4
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechH
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLK 93 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~k 93 (138)
...+|++|+|+|||..++..+..++..|.+++|+.-..
T Consensus 35 ~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~ 72 (1706)
T 3cmw_A 35 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 72 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecC
Confidence 34569999999999999977777778899999987643
No 173
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=89.66 E-value=0.44 Score=38.16 Aligned_cols=32 Identities=22% Similarity=0.147 Sum_probs=21.1
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEe
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTS 90 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~ 90 (138)
.+.+|.+|+|+|||.++....... +...+++.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~ 116 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA---NSTFFSVS 116 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEE
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCCEEEee
Confidence 456799999999999886433322 44444443
No 174
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.62 E-value=0.29 Score=38.12 Aligned_cols=32 Identities=16% Similarity=-0.024 Sum_probs=21.9
Q ss_pred CceEECcCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 042424 57 HGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSS 91 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P 91 (138)
..++.+|+|+|||.++....... +..++++..
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~ 69 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKM---GINPIMMSA 69 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeH
Confidence 34588999999999876443322 566666653
No 175
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=89.59 E-value=0.22 Score=38.04 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=14.0
Q ss_pred eEECcCCCchHHHHHH
Q 042424 59 TLTNPVYNGKTAVAEY 74 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ 74 (138)
+|++|+|||||.++..
T Consensus 5 ~I~G~~GSGKSTla~~ 20 (253)
T 2ze6_A 5 LIYGPTCSGKTDMAIQ 20 (253)
T ss_dssp EEECCTTSSHHHHHHH
T ss_pred EEECCCCcCHHHHHHH
Confidence 5899999999998863
No 176
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=89.58 E-value=0.16 Score=34.94 Aligned_cols=17 Identities=24% Similarity=0.215 Sum_probs=14.4
Q ss_pred eEECcCCCchHHHHHHH
Q 042424 59 TLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~a 75 (138)
+++||.|||||.++...
T Consensus 5 ~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 5 LITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEECCTTSCHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 49999999999988644
No 177
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.51 E-value=0.26 Score=41.00 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=19.9
Q ss_pred ceEECcCCCchHHHHHHHHHHHHHc-CCcEEEE
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFRD-KQRVIYT 89 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~~-~~rviyv 89 (138)
.+|++|||||||.... ++...+.. .++++++
T Consensus 170 i~I~GpnGSGKTTlL~-allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 170 ILVTGPTGSGKSTTLY-AGLQELNSSERNILTV 201 (418)
T ss_dssp EEEECSTTSCHHHHHH-HHHHHHCCTTSCEEEE
T ss_pred EEEECCCCCCHHHHHH-HHHhhcCCCCCEEEEe
Confidence 4599999999998643 34444443 4455543
No 178
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=89.51 E-value=0.25 Score=38.73 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=26.6
Q ss_pred ceEECcCCCchHHHHHHHHHHH-H-----------HcC----CcEEEEechHH
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMA-F-----------RDK----QRVIYTSSLKA 94 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~-l-----------~~~----~rviyv~P~ka 94 (138)
.+|.+|+|+|||..++..+..+ + ..| .+++|+.--.+
T Consensus 101 ~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 101 TEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 3499999999999998655543 2 124 68899876554
No 179
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=89.41 E-value=0.45 Score=38.02 Aligned_cols=33 Identities=18% Similarity=0.125 Sum_probs=21.7
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSS 91 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P 91 (138)
.+.+|.+|+|+|||.++...... .+...+++..
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~---~~~~~~~i~~ 150 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQ---SGATFFSISA 150 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHH---TTCEEEEEEG
T ss_pred ceEEEECCCCCCHHHHHHHHHHH---cCCeEEEEeh
Confidence 45679999999999988643322 2455555443
No 180
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=89.40 E-value=0.72 Score=32.69 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=38.2
Q ss_pred CCcEEEEechHHHHHHHHHHHHHhcC-ceEEEecCCcCC-----------CCCCEEEecH
Q 042424 83 KQRVIYTSSLKALSNQKYRELHKEFK-DVGLMTGDVTLS-----------PNASCLVMTT 130 (138)
Q Consensus 83 ~~rviyv~P~kaLv~Q~~~~l~~~f~-~v~~~tGd~~~~-----------~~~~IiVtTp 130 (138)
+.++|+.++++.-++..++.|++ .+ .+..++|+.... ...+|+|+|.
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~-~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~ 92 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQ-DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN 92 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHT-TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC
T ss_pred CCCEEEEECCHHHHHHHHHHHHH-cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 67899999999999999999987 44 788898886432 2678999983
No 181
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=89.27 E-value=0.22 Score=35.68 Aligned_cols=18 Identities=11% Similarity=-0.005 Sum_probs=14.5
Q ss_pred ceEECcCCCchHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~a 75 (138)
.+|++|+|||||.++-..
T Consensus 8 i~i~GpsGsGKSTL~~~L 25 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTL 25 (180)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 349999999999887543
No 182
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.23 E-value=0.27 Score=41.04 Aligned_cols=34 Identities=15% Similarity=-0.030 Sum_probs=24.1
Q ss_pred CceEECcCCCchHHHHHHHHHHHHHcCCcEEEEe
Q 042424 57 HGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTS 90 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~ 90 (138)
..++++++|+|||..+.........+|.+++++.
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4559999999999988633333335578887764
No 183
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.21 E-value=0.19 Score=40.84 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=13.2
Q ss_pred eEECcCCCchHHHHH
Q 042424 59 TLTNPVYNGKTAVAE 73 (138)
Q Consensus 59 ~l~aPTGsGKTlva~ 73 (138)
+|++|||+|||.++.
T Consensus 7 ~i~GptgsGKt~la~ 21 (322)
T 3exa_A 7 AIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEECCTTSCHHHHHH
T ss_pred EEECCCcCCHHHHHH
Confidence 489999999998775
No 184
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=89.11 E-value=0.38 Score=36.45 Aligned_cols=33 Identities=21% Similarity=0.123 Sum_probs=21.8
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSS 91 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P 91 (138)
.+.++.+|+|+|||.++...... -+...+++..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~---~~~~~~~v~~ 84 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE---TNATFIRVVG 84 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH---TTCEEEEEEG
T ss_pred CeEEEECCCCCcHHHHHHHHHHH---hCCCEEEEeh
Confidence 45679999999999887543322 2555555543
No 185
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.04 E-value=0.25 Score=40.09 Aligned_cols=15 Identities=47% Similarity=0.536 Sum_probs=13.3
Q ss_pred eEECcCCCchHHHHH
Q 042424 59 TLTNPVYNGKTAVAE 73 (138)
Q Consensus 59 ~l~aPTGsGKTlva~ 73 (138)
+|++|||||||.++.
T Consensus 14 ~i~GptgsGKt~la~ 28 (316)
T 3foz_A 14 FLMGPTASGKTALAI 28 (316)
T ss_dssp EEECCTTSCHHHHHH
T ss_pred EEECCCccCHHHHHH
Confidence 489999999998775
No 186
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.02 E-value=0.58 Score=34.26 Aligned_cols=32 Identities=28% Similarity=0.217 Sum_probs=21.0
Q ss_pred eEECcCCCchHHHHHHHHHHHHHcCCcEEEEe
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTS 90 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~ 90 (138)
.++++.|||||.+....+...-.+|.++-++-
T Consensus 8 ~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 8 QVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 48999999999887644433223466655444
No 187
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=88.95 E-value=0.24 Score=36.44 Aligned_cols=17 Identities=35% Similarity=0.391 Sum_probs=14.1
Q ss_pred eEECcCCCchHHHHHHH
Q 042424 59 TLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~a 75 (138)
+|++|+|||||.++...
T Consensus 12 ~l~GpsGsGKsTl~~~L 28 (208)
T 3tau_A 12 VLSGPSGVGKGTVREAV 28 (208)
T ss_dssp EEECCTTSCHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHH
Confidence 49999999999887543
No 188
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=88.91 E-value=0.89 Score=37.97 Aligned_cols=47 Identities=17% Similarity=0.132 Sum_probs=29.1
Q ss_pred eEECcCCCchHHHHHHHHHHHHHcCCcEEEEe--chHHHHHHHHHHHHH
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTS--SLKALSNQKYRELHK 105 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~--P~kaLv~Q~~~~l~~ 105 (138)
.+++|+|+|||.++.........+|++++++. +.++.+.++.+.+.+
T Consensus 102 ~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~ 150 (425)
T 2ffh_A 102 FLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGE 150 (425)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcc
Confidence 48899999999887633322224577777665 445555544444544
No 189
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=88.78 E-value=0.28 Score=34.72 Aligned_cols=18 Identities=28% Similarity=0.176 Sum_probs=15.2
Q ss_pred CceEECcCCCchHHHHHH
Q 042424 57 HGTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ 74 (138)
..++++|+|||||.++..
T Consensus 7 ~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 456999999999999864
No 190
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=88.76 E-value=0.21 Score=39.28 Aligned_cols=20 Identities=20% Similarity=0.081 Sum_probs=16.3
Q ss_pred CCceEECcCCCchHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~a 75 (138)
.+.++.+|+|+|||.++...
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i 45 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARAL 45 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHH
T ss_pred CcEEEECCCCchHHHHHHHH
Confidence 46679999999999887543
No 191
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=88.76 E-value=0.62 Score=33.73 Aligned_cols=16 Identities=25% Similarity=0.121 Sum_probs=13.9
Q ss_pred eEECcCCCchHHHHHH
Q 042424 59 TLTNPVYNGKTAVAEY 74 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ 74 (138)
.|.+|.|||||.++..
T Consensus 29 ~l~G~sGsGKSTl~~~ 44 (200)
T 3uie_A 29 WVTGLSGSGKSTLACA 44 (200)
T ss_dssp EEECSTTSSHHHHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 4999999999998853
No 192
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=88.64 E-value=0.29 Score=40.54 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=23.9
Q ss_pred ceEECcCCCchHHHHHHHHHHHHH------cCCcEEEEech
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFR------DKQRVIYTSSL 92 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~------~~~rviyv~P~ 92 (138)
..|.+|.|+|||..+...+...+. .+.+++|+.-.
T Consensus 181 ~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred EEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 349999999999998744333322 24678887644
No 193
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=88.62 E-value=0.26 Score=37.39 Aligned_cols=31 Identities=26% Similarity=0.178 Sum_probs=21.1
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEE
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYT 89 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv 89 (138)
.+.++++|+|+|||.++...... .+...+.+
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~---~~~~~~~i 95 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE---SNFPFIKI 95 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH---HTCSEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHH---hCCCEEEE
Confidence 45679999999999987643322 25555554
No 194
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=88.55 E-value=0.33 Score=38.63 Aligned_cols=20 Identities=35% Similarity=0.351 Sum_probs=16.6
Q ss_pred CCceEECcCCCchHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~a 75 (138)
.+.++.+|+|+|||.+|...
T Consensus 52 ~~vll~GppGtGKT~la~~i 71 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETL 71 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 56779999999999987543
No 195
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=88.52 E-value=0.54 Score=39.24 Aligned_cols=43 Identities=14% Similarity=0.072 Sum_probs=27.3
Q ss_pred ceEECcCCCchHHHHHHHHHHHHHc-CCcEEEEe--chHHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFRD-KQRVIYTS--SLKALSNQKY 100 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~~-~~rviyv~--P~kaLv~Q~~ 100 (138)
.++++++|+|||.++.........+ |++++++. |.++.+.++.
T Consensus 103 I~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql 148 (433)
T 2xxa_A 103 VLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQL 148 (433)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHH
Confidence 3488999999999987333333345 88887765 4444443333
No 196
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=88.49 E-value=0.34 Score=38.29 Aligned_cols=20 Identities=25% Similarity=0.160 Sum_probs=16.2
Q ss_pred CCceEECcCCCchHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~a 75 (138)
+..++.+|+|+|||.++...
T Consensus 46 ~~iLL~GppGtGKT~la~al 65 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAV 65 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHH
Confidence 45679999999999987633
No 197
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.49 E-value=0.58 Score=37.01 Aligned_cols=32 Identities=13% Similarity=0.066 Sum_probs=20.6
Q ss_pred eEECcCCCchHHHHHHHHHHHHHcCCcEEEEe
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTS 90 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~ 90 (138)
.+.+|+|||||..........-.+++++.+..
T Consensus 104 ~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 104 MIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 49999999999877532222223466766653
No 198
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=88.40 E-value=0.6 Score=33.98 Aligned_cols=31 Identities=16% Similarity=0.036 Sum_probs=19.9
Q ss_pred eEECcCCCchHHHHHHHHHHHHHcCCcEEEE
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFRDKQRVIYT 89 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~~~~rviyv 89 (138)
.|++|.|||||.++.......-..+..++++
T Consensus 26 ~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 26 GIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 3999999999998754332211235566554
No 199
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.37 E-value=0.41 Score=42.07 Aligned_cols=20 Identities=25% Similarity=0.155 Sum_probs=16.3
Q ss_pred CceEECcCCCchHHHHHHHH
Q 042424 57 HGTLTNPVYNGKTAVAEYAI 76 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ai 76 (138)
+.++.+|||+|||.+|....
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala 542 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALA 542 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46799999999999986433
No 200
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=88.31 E-value=0.29 Score=36.83 Aligned_cols=21 Identities=29% Similarity=0.230 Sum_probs=16.5
Q ss_pred CCceEECcCCCchHHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYAI 76 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai 76 (138)
.+.++.+|+|+|||.++....
T Consensus 45 ~~vll~G~~GtGKT~la~~la 65 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVA 65 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHH
Confidence 345699999999999886433
No 201
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=88.30 E-value=0.35 Score=35.88 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=15.9
Q ss_pred CCceEECcCCCchHHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYAI 76 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai 76 (138)
+..+|+||.|+|||.+.-..+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~ 22 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 345799999999998765433
No 202
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=88.26 E-value=0.7 Score=33.65 Aligned_cols=32 Identities=16% Similarity=-0.044 Sum_probs=21.5
Q ss_pred EECcCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 042424 60 LTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSS 91 (138)
Q Consensus 60 l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P 91 (138)
.+.-+|.|||.++........++|.|++++=|
T Consensus 7 ~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp 38 (224)
T 1byi_A 7 TGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 44458999999997333322356889888644
No 203
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=88.24 E-value=0.18 Score=41.11 Aligned_cols=31 Identities=16% Similarity=0.037 Sum_probs=22.9
Q ss_pred ceEECcCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSS 91 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P 91 (138)
.++.+|+|+|||..+...+.. .|.+++|+.-
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 369999999999998755443 4667666655
No 204
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=88.19 E-value=0.5 Score=37.01 Aligned_cols=35 Identities=9% Similarity=-0.037 Sum_probs=27.6
Q ss_pred ceEECcCCCchHHHHHHHHHHHHHcCCcEEEEech
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSL 92 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~ 92 (138)
.++++.+|+|||..++..+...+++|.+++|+.=.
T Consensus 24 ~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~ 58 (260)
T 3bs4_A 24 LIHEEDASSRGKDILFYILSRKLKSDNLVGMFSIS 58 (260)
T ss_dssp EEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred EEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEe
Confidence 34777888888877787777788889999998754
No 205
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=87.93 E-value=0.49 Score=37.69 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=16.0
Q ss_pred CCceEECcCCCchHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ 74 (138)
.+.++.+|+|+|||.++..
T Consensus 73 ~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp CCEEEECCTTSSHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHH
Confidence 4567999999999998863
No 206
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=87.92 E-value=0.61 Score=35.79 Aligned_cols=20 Identities=35% Similarity=0.282 Sum_probs=16.1
Q ss_pred CCceEECcCCCchHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~a 75 (138)
.+.++++|+|+|||.++...
T Consensus 39 ~~vll~G~~GtGKT~la~~i 58 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVI 58 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHH
Confidence 45579999999999987543
No 207
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=87.91 E-value=0.54 Score=37.11 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=28.2
Q ss_pred eEECcCCCchHHHHH-HHHHHHHHcCCcEEEEe--chHHHHHHHHHHHHH
Q 042424 59 TLTNPVYNGKTAVAE-YAIAMAFRDKQRVIYTS--SLKALSNQKYRELHK 105 (138)
Q Consensus 59 ~l~aPTGsGKTlva~-~ai~~~l~~~~rviyv~--P~kaLv~Q~~~~l~~ 105 (138)
++++++|+|||..+. ++... ...|++++++. +.++.+.++.+.+.+
T Consensus 102 ~i~G~~G~GKTT~~~~la~~~-~~~g~~v~l~~~D~~r~~a~~ql~~~~~ 150 (297)
T 1j8m_F 102 MLVGVQGTGKTTTAGKLAYFY-KKKGFKVGLVGADVYRPAALEQLQQLGQ 150 (297)
T ss_dssp EEECSSCSSTTHHHHHHHHHH-HHTTCCEEEEECCCSSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH-HHCCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 488999999998876 44333 34577776654 234444444444444
No 208
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=87.82 E-value=0.32 Score=34.87 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=13.7
Q ss_pred eEECcCCCchHHHHHH
Q 042424 59 TLTNPVYNGKTAVAEY 74 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ 74 (138)
.|.||+|||||.++-.
T Consensus 11 ~l~Gp~GsGKSTl~~~ 26 (205)
T 3tr0_A 11 IISAPSGAGKTSLVRA 26 (205)
T ss_dssp EEECCTTSCHHHHHHH
T ss_pred EEECcCCCCHHHHHHH
Confidence 4999999999988753
No 209
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=87.81 E-value=0.36 Score=36.22 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=15.7
Q ss_pred CCceEECcCCCchHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ 74 (138)
.+.++.+|+|+|||.++..
T Consensus 46 ~~vll~G~~GtGKT~la~~ 64 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKA 64 (257)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHH
Confidence 4567999999999988753
No 210
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=87.80 E-value=1.3 Score=31.08 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=38.9
Q ss_pred cCCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCcCC-----------CCCCEEEecH
Q 042424 82 DKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLS-----------PNASCLVMTT 130 (138)
Q Consensus 82 ~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~~~-----------~~~~IiVtTp 130 (138)
.+.++|+.++++.-++..++.|++.--.+..++|+.... ...+|+|+|.
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 88 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD 88 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 468899999999999999999988322788888886532 2678999984
No 211
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=87.79 E-value=0.56 Score=39.57 Aligned_cols=36 Identities=22% Similarity=0.141 Sum_probs=26.2
Q ss_pred ceEECcCCCchHHHHHHHHHHHHHcCCcEEEEechH
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLK 93 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~k 93 (138)
.+|.+|+|+|||..+...+......|.+++|+++-.
T Consensus 284 ~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee 319 (525)
T 1tf7_A 284 ILATGATGTGKTLLVSRFVENACANKERAILFAYEE 319 (525)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 349999999999988644433334577888988653
No 212
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=87.64 E-value=0.64 Score=36.82 Aligned_cols=32 Identities=13% Similarity=0.040 Sum_probs=20.2
Q ss_pred ceEECcCCCchHHHHH-HHHHHHHHcCCcEEEEe
Q 042424 58 GTLTNPVYNGKTAVAE-YAIAMAFRDKQRVIYTS 90 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~-~ai~~~l~~~~rviyv~ 90 (138)
..+.+|+|||||.... ++-+. -..++++++..
T Consensus 105 i~lvG~nGsGKTTll~~Lagll-~~~~g~V~l~g 137 (304)
T 1rj9_A 105 VLVVGVNGVGKTTTIAKLGRYY-QNLGKKVMFCA 137 (304)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH-HTTTCCEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHH-HhcCCEEEEEe
Confidence 3489999999998765 33322 12456665543
No 213
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=87.47 E-value=0.36 Score=39.07 Aligned_cols=17 Identities=35% Similarity=0.280 Sum_probs=14.4
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
.+|++|||||||.++..
T Consensus 8 i~i~GptGsGKTtla~~ 24 (323)
T 3crm_A 8 IFLMGPTAAGKTDLAMA 24 (323)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45999999999988753
No 214
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=87.43 E-value=0.44 Score=33.56 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=13.4
Q ss_pred ceEECcCCCchHHHHH
Q 042424 58 GTLTNPVYNGKTAVAE 73 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~ 73 (138)
.+|.+|+|||||.+..
T Consensus 26 ~~I~G~NGsGKStil~ 41 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLD 41 (149)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3599999999998853
No 215
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=87.41 E-value=0.36 Score=39.36 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=14.3
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
.+|++|||||||.++..
T Consensus 10 I~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 10 IVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCcCcHHHHHHH
Confidence 35999999999998853
No 216
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=87.32 E-value=0.88 Score=32.17 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=19.4
Q ss_pred eEECcCCCchHHHHHHHHHHHHHcCCcEEE
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFRDKQRVIY 88 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~~~~rviy 88 (138)
++.|+.|||||.++.......-..|..++.
T Consensus 4 ~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~ 33 (197)
T 2z0h_A 4 TFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHCCC-EEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 489999999999987543322223555554
No 217
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=87.30 E-value=0.74 Score=36.93 Aligned_cols=47 Identities=15% Similarity=0.039 Sum_probs=25.9
Q ss_pred eEECcCCCchHHHHHHHHHHHHHcCCcEEEEe-ch-HHHHHHHHHHHHH
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTS-SL-KALSNQKYRELHK 105 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~-P~-kaLv~Q~~~~l~~ 105 (138)
.+.+|+|+|||.............++++++.. ++ +.-+.++.+.+.+
T Consensus 133 ~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~ 181 (328)
T 3e70_C 133 MFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAK 181 (328)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHH
Confidence 49999999999876532222223466665542 32 2233344444444
No 218
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=87.27 E-value=0.26 Score=42.05 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=19.8
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEE
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIY 88 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviy 88 (138)
.+.++++|||||||.... ++...+....+++.
T Consensus 261 ~~i~I~GptGSGKTTlL~-aL~~~i~~~~giit 292 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLN-AIMMFIPPDAKVVS 292 (511)
T ss_dssp CCEEEEESTTSSHHHHHH-HHGGGSCTTCCEEE
T ss_pred CEEEEECCCCCCHHHHHH-HHHhhCCCCCCEEE
Confidence 356699999999997643 33333333444443
No 219
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=87.18 E-value=1.6 Score=31.73 Aligned_cols=48 Identities=17% Similarity=0.028 Sum_probs=38.7
Q ss_pred CCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCcCC-----------CCCCEEEecH
Q 042424 83 KQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLS-----------PNASCLVMTT 130 (138)
Q Consensus 83 ~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~~~-----------~~~~IiVtTp 130 (138)
+.++|++++++.-++..++.|++.--.+..++|+.... .+.+|+|+|.
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~ 112 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD 112 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 67899999999999999999987422788899986532 2678999994
No 220
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=87.08 E-value=0.42 Score=38.41 Aligned_cols=24 Identities=13% Similarity=-0.074 Sum_probs=19.2
Q ss_pred CCceEECcCCCchHHHHHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMA 79 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~ 79 (138)
.+..|+||+|+|||.++...+...
T Consensus 46 ~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 455699999999999987766554
No 221
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.92 E-value=0.71 Score=38.79 Aligned_cols=33 Identities=24% Similarity=0.221 Sum_probs=22.4
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSS 91 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P 91 (138)
+..++.+|.|+|||++|.....+ -+...+++..
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e---~~~~~~~v~~ 248 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT---IGANFIFSPA 248 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH---HTCEEEEEEG
T ss_pred CeEEEECCCCCcHHHHHHHHHHH---hCCCEEEEeh
Confidence 45669999999999887643332 2566665554
No 222
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=86.90 E-value=0.82 Score=35.86 Aligned_cols=31 Identities=23% Similarity=0.214 Sum_probs=21.8
Q ss_pred eEECcCCCchHHHHH-HHHHHHHHcCCcEEEEe
Q 042424 59 TLTNPVYNGKTAVAE-YAIAMAFRDKQRVIYTS 90 (138)
Q Consensus 59 ~l~aPTGsGKTlva~-~ai~~~l~~~~rviyv~ 90 (138)
.+++++|+|||..+. ++...+ ..+++++++-
T Consensus 102 ~i~g~~G~GKTT~~~~la~~~~-~~~~~v~l~~ 133 (295)
T 1ls1_A 102 FLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVA 133 (295)
T ss_dssp EEECCTTTTHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHH-HcCCeEEEec
Confidence 388999999998875 444433 4577776654
No 223
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=86.89 E-value=0.29 Score=34.33 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=14.3
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
.+++++.|||||.++-.
T Consensus 6 i~l~G~~GsGKST~a~~ 22 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRC 22 (178)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 35999999999998853
No 224
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=86.88 E-value=0.39 Score=34.50 Aligned_cols=16 Identities=19% Similarity=0.405 Sum_probs=13.6
Q ss_pred eEECcCCCchHHHHHH
Q 042424 59 TLTNPVYNGKTAVAEY 74 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ 74 (138)
.|.+|+|||||.+.-.
T Consensus 5 ~l~GpsGaGKsTl~~~ 20 (186)
T 3a00_A 5 VISGPSGTGKSTLLKK 20 (186)
T ss_dssp EEESSSSSSHHHHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 4999999999988753
No 225
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.86 E-value=0.81 Score=38.19 Aligned_cols=34 Identities=24% Similarity=0.147 Sum_probs=23.4
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEech
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSL 92 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~ 92 (138)
+..++.+|.|+|||++|.....+ -+...+.+...
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e---~~~~f~~v~~s 216 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH---TDCKFIRVSGA 216 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH---HTCEEEEEEGG
T ss_pred CceEEeCCCCCCHHHHHHHHHHh---hCCCceEEEhH
Confidence 45669999999999887544332 25666666553
No 226
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=86.84 E-value=0.44 Score=37.04 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=16.5
Q ss_pred CCceEECcCCCchHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~a 75 (138)
.+.++.+|+|+|||.++...
T Consensus 56 ~~vll~G~~GtGKT~la~~i 75 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANII 75 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHH
Confidence 45679999999999988644
No 227
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.83 E-value=0.72 Score=38.71 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=22.0
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSS 91 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P 91 (138)
+..++.||.|+|||++|.....+ -+...+.+..
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e---~~~~f~~v~~ 248 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQ---TNATFLKLAA 248 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH---HTCEEEEEEG
T ss_pred CeeEEECcCCCCHHHHHHHHHHH---hCCCEEEEeh
Confidence 45669999999999887543332 2555555544
No 228
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=86.77 E-value=0.38 Score=37.74 Aligned_cols=21 Identities=24% Similarity=0.088 Sum_probs=16.7
Q ss_pred CCceEECcCCCchHHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYAI 76 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai 76 (138)
.+.+++||+|+|||.++....
T Consensus 71 ~~vLl~GppGtGKT~la~~la 91 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMA 91 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 356799999999999876443
No 229
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=86.72 E-value=0.41 Score=37.22 Aligned_cols=19 Identities=26% Similarity=0.158 Sum_probs=15.6
Q ss_pred CCceEECcCCCchHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ 74 (138)
...++.+|+|+|||.++..
T Consensus 50 ~~vLL~Gp~GtGKT~la~a 68 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKA 68 (301)
T ss_dssp SEEEEECSSSSSHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHH
Confidence 4466999999999998763
No 230
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=86.70 E-value=1.9 Score=30.63 Aligned_cols=49 Identities=10% Similarity=-0.076 Sum_probs=39.0
Q ss_pred cCCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCcC-----------CCCCCEEEecH
Q 042424 82 DKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTL-----------SPNASCLVMTT 130 (138)
Q Consensus 82 ~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~~-----------~~~~~IiVtTp 130 (138)
.+.++|+.++++.-++..++.|.+.--.+..++|+... +...+|+|+|.
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~ 89 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 89 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC
Confidence 46799999999999999999998832278888888653 22678999984
No 231
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=86.64 E-value=0.42 Score=38.43 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=23.3
Q ss_pred eEECcCCCchHHHHHHHHHHHHH---c---CCcEEEEech
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFR---D---KQRVIYTSSL 92 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~---~---~~rviyv~P~ 92 (138)
.|.+|.|||||..+...+..... . +.+++|+.-.
T Consensus 135 ~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e 174 (349)
T 1pzn_A 135 EVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 174 (349)
T ss_dssp EEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS
T ss_pred EEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCC
Confidence 39999999999998754443311 2 3577887543
No 232
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=86.58 E-value=0.49 Score=32.66 Aligned_cols=17 Identities=29% Similarity=0.108 Sum_probs=14.4
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
.+|+||.|||||.++..
T Consensus 4 i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEECSSSSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 35999999999998864
No 233
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=86.54 E-value=0.81 Score=35.20 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=27.8
Q ss_pred eEECcCCCchHHHHHHHHHHHHHcCCcEEEEechHH
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKA 94 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~ka 94 (138)
++++|-|||||...+-.+.++...|.+++++-|.+.
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D 67 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID 67 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 389999999998776666666667899999988753
No 234
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=86.51 E-value=1.6 Score=32.10 Aligned_cols=50 Identities=18% Similarity=0.178 Sum_probs=39.8
Q ss_pred HcCCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCcCC-----------CCCCEEEecH
Q 042424 81 RDKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLS-----------PNASCLVMTT 130 (138)
Q Consensus 81 ~~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~~~-----------~~~~IiVtTp 130 (138)
..+.++|+.++++.-+++.++.|.+.--.+..++|+.... ...+|+|+|.
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~ 89 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD 89 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC
Confidence 3478999999999999999999987433788899986532 2678999994
No 235
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=86.26 E-value=1.5 Score=37.56 Aligned_cols=53 Identities=11% Similarity=0.069 Sum_probs=41.8
Q ss_pred CCceEECcCCCchHHHHH-HHHHHHHHc-CCcEEEEechHHHHHHHHHHHHHhcC
Q 042424 56 THGTLTNPVYNGKTAVAE-YAIAMAFRD-KQRVIYTSSLKALSNQKYRELHKEFK 108 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~-~ai~~~l~~-~~rviyv~P~kaLv~Q~~~~l~~~f~ 108 (138)
+..++..|-++|||.+.. +++..++.. +.++++++|++..+.+.++.++..+.
T Consensus 179 r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 179 RMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (592)
T ss_dssp SEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred cEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 346699999999999875 555555554 56899999999999999988877554
No 236
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=86.22 E-value=0.9 Score=37.04 Aligned_cols=32 Identities=13% Similarity=0.066 Sum_probs=20.6
Q ss_pred eEECcCCCchHHHHHHHHHHHHHcCCcEEEEe
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTS 90 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~ 90 (138)
.+.+|+|||||..........-.+++++++..
T Consensus 161 ~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 161 MIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 49999999999877532222223466766654
No 237
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=86.21 E-value=0.43 Score=34.84 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=14.7
Q ss_pred ceEECcCCCchHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~a 75 (138)
.+|++|+|||||.+.-..
T Consensus 7 i~lvGpsGaGKSTLl~~L 24 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLLKKL 24 (198)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 459999999999887543
No 238
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=86.11 E-value=0.34 Score=33.75 Aligned_cols=17 Identities=18% Similarity=-0.113 Sum_probs=14.3
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
.++++|.|||||.++..
T Consensus 5 I~i~G~~GsGKST~a~~ 21 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWARE 21 (181)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEecCCCCCHHHHHHH
Confidence 35999999999998853
No 239
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=86.04 E-value=0.54 Score=34.04 Aligned_cols=19 Identities=26% Similarity=0.123 Sum_probs=15.4
Q ss_pred CceEECcCCCchHHHHHHH
Q 042424 57 HGTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~a 75 (138)
..+|++|.|||||.++...
T Consensus 27 ~i~l~G~~GsGKsTl~~~L 45 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAF 45 (199)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4559999999999988633
No 240
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=86.00 E-value=0.95 Score=33.12 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=20.9
Q ss_pred EECcCCCchHHHHH-HHHHHHHHcCCcEEEEe
Q 042424 60 LTNPVYNGKTAVAE-YAIAMAFRDKQRVIYTS 90 (138)
Q Consensus 60 l~aPTGsGKTlva~-~ai~~~l~~~~rviyv~ 90 (138)
.+.-.|.|||.++. +|..-+ ++|+|++++=
T Consensus 8 ~s~kgGvGKTt~a~~LA~~la-~~g~~VlliD 38 (237)
T 1g3q_A 8 VSGKGGTGKTTVTANLSVALG-DRGRKVLAVD 38 (237)
T ss_dssp ECSSTTSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred ecCCCCCCHHHHHHHHHHHHH-hcCCeEEEEe
Confidence 45668899999997 444332 4588888764
No 241
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.97 E-value=0.84 Score=38.19 Aligned_cols=34 Identities=21% Similarity=0.126 Sum_probs=22.4
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEech
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSL 92 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~ 92 (138)
+..++.||.|+|||++|.....+ -+...+.+...
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~---~~~~~~~v~~~ 240 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS---TKAAFIRVNGS 240 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH---HTCEEEEEEGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHH---hCCCeEEEecc
Confidence 44669999999999887643322 25555555543
No 242
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=85.88 E-value=0.47 Score=33.93 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=13.9
Q ss_pred eEECcCCCchHHHHHH
Q 042424 59 TLTNPVYNGKTAVAEY 74 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ 74 (138)
+|+||.|||||.++..
T Consensus 10 ~l~G~~GsGKSTl~~~ 25 (207)
T 2j41_A 10 VLSGPSGVGKGTVRKR 25 (207)
T ss_dssp EEECSTTSCHHHHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 4999999999988754
No 243
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=85.76 E-value=0.91 Score=38.64 Aligned_cols=30 Identities=30% Similarity=0.323 Sum_probs=22.9
Q ss_pred eEECcCCCchHHHHH-HHHHHHHHcCCcEEEE
Q 042424 59 TLTNPVYNGKTAVAE-YAIAMAFRDKQRVIYT 89 (138)
Q Consensus 59 ~l~aPTGsGKTlva~-~ai~~~l~~~~rviyv 89 (138)
++++..|.|||.++. +|..-+ +.|+|+++|
T Consensus 12 ~~sgkGGvGKTT~a~~lA~~lA-~~G~rVLlv 42 (589)
T 1ihu_A 12 FFTGKGGVGKTSISCATAIRLA-EQGKRVLLV 42 (589)
T ss_dssp EEECSTTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred EEeCCCcCHHHHHHHHHHHHHH-HCCCcEEEE
Confidence 488999999999997 454433 568888884
No 244
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=85.71 E-value=0.9 Score=32.35 Aligned_cols=30 Identities=23% Similarity=0.211 Sum_probs=20.5
Q ss_pred EECcCCCchHHHHH-HHHHHHHHcCCcEEEEe
Q 042424 60 LTNPVYNGKTAVAE-YAIAMAFRDKQRVIYTS 90 (138)
Q Consensus 60 l~aPTGsGKTlva~-~ai~~~l~~~~rviyv~ 90 (138)
.+.-.|+|||.++. +|..-+ +.|.+++++=
T Consensus 7 ~s~kgG~GKTt~a~~la~~la-~~g~~vlliD 37 (206)
T 4dzz_A 7 LNPKGGSGKTTAVINIATALS-RSGYNIAVVD 37 (206)
T ss_dssp CCSSTTSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred EeCCCCccHHHHHHHHHHHHH-HCCCeEEEEE
Confidence 34567899999997 444333 4688887764
No 245
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=85.64 E-value=0.69 Score=38.26 Aligned_cols=19 Identities=26% Similarity=0.167 Sum_probs=15.8
Q ss_pred CCceEECcCCCchHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ 74 (138)
.+.+|.+|+|+|||.++..
T Consensus 168 ~~vLL~GppGtGKT~lA~a 186 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKA 186 (444)
T ss_dssp SEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4567999999999988753
No 246
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=85.53 E-value=0.57 Score=34.03 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=15.1
Q ss_pred ceEECcCCCchHHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYAI 76 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai 76 (138)
.++++|.|||||.++....
T Consensus 15 i~l~G~sGsGKsTl~~~L~ 33 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIKKVL 33 (204)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3499999999999876433
No 247
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=85.52 E-value=1.2 Score=33.60 Aligned_cols=31 Identities=13% Similarity=0.115 Sum_probs=21.8
Q ss_pred ECcCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 042424 61 TNPVYNGKTAVAEYAIAMAFRDKQRVIYTSS 91 (138)
Q Consensus 61 ~aPTGsGKTlva~~ai~~~l~~~~rviyv~P 91 (138)
..-||+|||.++...+....++|.++.|.=|
T Consensus 11 gt~t~vGKT~vt~~L~~~l~~~G~~V~~~KP 41 (228)
T 3of5_A 11 GTDTEVGKTYISTKLIEVCEHQNIKSLCLKP 41 (228)
T ss_dssp ESSSSSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred eCCCCCCHHHHHHHHHHHHHHCCCeeEEecc
Confidence 3448999999987555444456888877644
No 248
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=85.51 E-value=0.63 Score=33.09 Aligned_cols=19 Identities=21% Similarity=0.139 Sum_probs=15.4
Q ss_pred ceEECcCCCchHHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYAI 76 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai 76 (138)
.++.+|.|+|||.++....
T Consensus 48 ~ll~G~~G~GKT~l~~~~~ 66 (250)
T 1njg_A 48 YLFSGTRGVGKTSIARLLA 66 (250)
T ss_dssp EEEECSTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4699999999999876443
No 249
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=85.48 E-value=0.46 Score=39.81 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=13.8
Q ss_pred eEECcCCCchHHHHHH
Q 042424 59 TLTNPVYNGKTAVAEY 74 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ 74 (138)
+|++|||+|||.++..
T Consensus 6 ~i~GptgsGKttla~~ 21 (409)
T 3eph_A 6 VIAGTTGVGKSQLSIQ 21 (409)
T ss_dssp EEEECSSSSHHHHHHH
T ss_pred EEECcchhhHHHHHHH
Confidence 4999999999988753
No 250
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=85.48 E-value=1.2 Score=33.26 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=21.6
Q ss_pred EECcCCCchHHHHH-HHHHHHHHcCCcEEEEe
Q 042424 60 LTNPVYNGKTAVAE-YAIAMAFRDKQRVIYTS 90 (138)
Q Consensus 60 l~aPTGsGKTlva~-~ai~~~l~~~~rviyv~ 90 (138)
.++-.|.|||.++. +|..-+ +.|.+++++=
T Consensus 8 ~s~kgGvGKTt~a~~LA~~la-~~g~~VlliD 38 (263)
T 1hyq_A 8 ASGKGGTGKTTITANLGVALA-QLGHDVTIVD 38 (263)
T ss_dssp EESSSCSCHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred ECCCCCCCHHHHHHHHHHHHH-hCCCcEEEEE
Confidence 56778999999997 444333 4588888864
No 251
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=85.47 E-value=1.3 Score=31.09 Aligned_cols=30 Identities=17% Similarity=-0.017 Sum_probs=19.3
Q ss_pred eEECcCCCchHHHHHHHHHHHHHcCCcEEE
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFRDKQRVIY 88 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~~~~rviy 88 (138)
.++|+.|||||.++.....+.-..|..++.
T Consensus 4 ~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~ 33 (195)
T 2pbr_A 4 AFEGIDGSGKTTQAKKLYEYLKQKGYFVSL 33 (195)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 489999999999886443322123554444
No 252
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=85.24 E-value=1.3 Score=32.24 Aligned_cols=29 Identities=17% Similarity=0.014 Sum_probs=18.6
Q ss_pred ceEECcCCCchHHHHHHHHHHHHHcCCcE
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFRDKQRV 86 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~~~~rv 86 (138)
..+++|.|||||......+...-..+.++
T Consensus 9 i~i~G~sGsGKTTl~~~l~~~l~~~g~~v 37 (174)
T 1np6_A 9 LAFAAWSGTGKTTLLKKLIPALCARGIRP 37 (174)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEeCCCCCHHHHHHHHHHhccccCCce
Confidence 34999999999987654443322345444
No 253
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=85.23 E-value=0.56 Score=41.92 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=21.0
Q ss_pred CceEECcCCCchHHHHHHHHHHHHHcCCcEEEE
Q 042424 57 HGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYT 89 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv 89 (138)
+.++.+|+|+|||.++..........+...+++
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i 622 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 622 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEE
Confidence 457999999999998864333322234444444
No 254
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=85.05 E-value=1.2 Score=33.78 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=20.1
Q ss_pred ceEECcCCCchHHHHHHHHHHHHH-cCCcEEEE
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFR-DKQRVIYT 89 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~-~~~rviyv 89 (138)
.+++|+.|||||.++...... +. .|..++++
T Consensus 7 Ivl~G~pGSGKSTla~~La~~-L~~~g~~~i~~ 38 (260)
T 3a4m_A 7 IILTGLPGVGKSTFSKNLAKI-LSKNNIDVIVL 38 (260)
T ss_dssp EEEECCTTSSHHHHHHHHHHH-HHHTTCCEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHH-HHhCCCEEEEE
Confidence 359999999999988643332 23 35555533
No 255
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=84.85 E-value=0.72 Score=32.08 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=14.4
Q ss_pred CceEECcCCCchHHHHH
Q 042424 57 HGTLTNPVYNGKTAVAE 73 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~ 73 (138)
...|++|.|||||.++.
T Consensus 6 ~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 34599999999999875
No 256
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=84.78 E-value=0.43 Score=33.99 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=13.4
Q ss_pred eEECcCCCchHHHHH
Q 042424 59 TLTNPVYNGKTAVAE 73 (138)
Q Consensus 59 ~l~aPTGsGKTlva~ 73 (138)
.+.+|.|||||..+.
T Consensus 13 ~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 13 VLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEECCTTSCHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 499999999998876
No 257
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=84.78 E-value=1.3 Score=34.29 Aligned_cols=32 Identities=19% Similarity=0.017 Sum_probs=21.5
Q ss_pred EECcCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 042424 60 LTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSS 91 (138)
Q Consensus 60 l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P 91 (138)
....||+|||.++...+....++|.++.|+=|
T Consensus 32 tgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKP 63 (251)
T 3fgn_A 32 TGTGTGVGKTVVCAALASAARQAGIDVAVCKP 63 (251)
T ss_dssp EESSTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EeCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Confidence 44458999999987544444456777777643
No 258
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.75 E-value=0.76 Score=38.65 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=22.8
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSS 91 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P 91 (138)
...+++||+|+|||.++...... + +..++++-.
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~-l--~~~~i~in~ 110 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQE-L--GYDILEQNA 110 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH-T--TCEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHH-c--CCCEEEEeC
Confidence 45669999999999887644332 2 666666643
No 259
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=84.72 E-value=0.51 Score=33.42 Aligned_cols=17 Identities=29% Similarity=0.257 Sum_probs=14.0
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
.+|.+|.|||||.++..
T Consensus 12 i~l~G~~GsGKSTl~~~ 28 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIAEA 28 (191)
T ss_dssp EEEEECTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34999999999988753
No 260
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=84.65 E-value=0.73 Score=32.48 Aligned_cols=19 Identities=26% Similarity=0.146 Sum_probs=15.6
Q ss_pred CCceEECcCCCchHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ 74 (138)
...+++++.|||||.++..
T Consensus 12 ~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHH
Confidence 3456999999999998864
No 261
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=84.63 E-value=0.54 Score=35.89 Aligned_cols=17 Identities=24% Similarity=0.030 Sum_probs=13.9
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
.++++|||+|||..++.
T Consensus 37 ilI~GpsGsGKStLA~~ 53 (205)
T 2qmh_A 37 VLITGDSGVGKSETALE 53 (205)
T ss_dssp EEEECCCTTTTHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45999999999977653
No 262
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=84.52 E-value=0.72 Score=33.55 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=14.0
Q ss_pred ceEECcCCCchHHHHH
Q 042424 58 GTLTNPVYNGKTAVAE 73 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~ 73 (138)
..|.+|.|||||.++-
T Consensus 8 i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 8 ITIDGPSGAGKGTLCK 23 (227)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 4599999999999985
No 263
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=84.51 E-value=0.67 Score=34.74 Aligned_cols=19 Identities=11% Similarity=0.099 Sum_probs=14.8
Q ss_pred ceEECcCCCchHHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYAI 76 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai 76 (138)
.+|++|+|+|||.+....+
T Consensus 22 ivl~GPSGaGKsTL~~~L~ 40 (197)
T 3ney_A 22 LVLIGASGVGRSHIKNALL 40 (197)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 3499999999998775433
No 264
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=84.51 E-value=2.6 Score=39.16 Aligned_cols=53 Identities=8% Similarity=0.040 Sum_probs=42.3
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHc-C-----------CcEEEEechHHHHHHHHHHHHHhcC
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRD-K-----------QRVIYTSSLKALSNQKYRELHKEFK 108 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~-~-----------~rviyv~P~kaLv~Q~~~~l~~~f~ 108 (138)
++.+|.|.-|||||.+-..-+++.+.. | .+++.|.=|++=+.++.+++++.+.
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 455899999999998876656665542 2 4799999999999999999988654
No 265
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=84.50 E-value=0.41 Score=37.14 Aligned_cols=20 Identities=10% Similarity=-0.067 Sum_probs=16.3
Q ss_pred CCceEECcCCCchHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~a 75 (138)
.+.++.||+|+|||.++...
T Consensus 46 ~~vLl~G~~GtGKT~la~~l 65 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRAL 65 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHH
Confidence 45679999999999988643
No 266
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=84.41 E-value=0.74 Score=35.66 Aligned_cols=17 Identities=35% Similarity=0.253 Sum_probs=14.4
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
..|+|+.|||||.++..
T Consensus 78 I~I~G~~GSGKSTva~~ 94 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQR 94 (281)
T ss_dssp EEEEECTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34999999999999853
No 267
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=84.28 E-value=0.68 Score=34.58 Aligned_cols=18 Identities=33% Similarity=0.222 Sum_probs=14.8
Q ss_pred CceEECcCCCchHHHHHH
Q 042424 57 HGTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ 74 (138)
..++.+|+|+|||..+..
T Consensus 51 g~ll~G~~G~GKTtl~~~ 68 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARA 68 (254)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 356999999999987753
No 268
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=84.21 E-value=1.2 Score=35.16 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=22.6
Q ss_pred EECcCCCchHHHHH-HHHHHHHHcCCcEEEEe
Q 042424 60 LTNPVYNGKTAVAE-YAIAMAFRDKQRVIYTS 90 (138)
Q Consensus 60 l~aPTGsGKTlva~-~ai~~~l~~~~rviyv~ 90 (138)
.++..|.|||.++. +|..-+ +.|+|++++-
T Consensus 19 ~sgKGGvGKTTvA~~LA~~lA-~~G~rVLlvD 49 (324)
T 3zq6_A 19 IGGKGGVGKTTISAATALWMA-RSGKKTLVIS 49 (324)
T ss_dssp EEESTTSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred EeCCCCchHHHHHHHHHHHHH-HCCCcEEEEe
Confidence 78889999999996 455433 4588887764
No 269
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=84.18 E-value=1.6 Score=30.71 Aligned_cols=16 Identities=38% Similarity=0.190 Sum_probs=13.8
Q ss_pred eEECcCCCchHHHHHH
Q 042424 59 TLTNPVYNGKTAVAEY 74 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ 74 (138)
.++++.|||||.++-.
T Consensus 9 ~l~G~~GsGKST~~~~ 24 (179)
T 2pez_A 9 WLTGLSGAGKTTVSMA 24 (179)
T ss_dssp EEECCTTSSHHHHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 4999999999998853
No 270
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=84.16 E-value=1.5 Score=31.93 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=13.1
Q ss_pred eEECcCCCchHHHHH
Q 042424 59 TLTNPVYNGKTAVAE 73 (138)
Q Consensus 59 ~l~aPTGsGKTlva~ 73 (138)
.|.+|+|||||..+.
T Consensus 26 ~I~G~sGsGKSTl~~ 40 (208)
T 3c8u_A 26 ALSGAPGSGKSTLSN 40 (208)
T ss_dssp EEECCTTSCTHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 499999999998774
No 271
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=84.14 E-value=0.61 Score=32.91 Aligned_cols=16 Identities=13% Similarity=0.314 Sum_probs=13.5
Q ss_pred ceEECcCCCchHHHHH
Q 042424 58 GTLTNPVYNGKTAVAE 73 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~ 73 (138)
.+|++|+|||||.+..
T Consensus 29 ~~i~G~NGsGKStll~ 44 (182)
T 3kta_A 29 TAIVGANGSGKSNIGD 44 (182)
T ss_dssp EEEEECTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3599999999998764
No 272
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=84.06 E-value=2.7 Score=32.41 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=43.2
Q ss_pred cCCCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcC-ceEEEecCCc
Q 042424 63 PVYNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFK-DVGLMTGDVT 118 (138)
Q Consensus 63 PTGsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~-~v~~~tGd~~ 118 (138)
...+||.....-.+...+..+.++|+.+.++..++...+.|.+.++ .+..++|+..
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~ 148 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELS 148 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSC
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCC
Confidence 3568897765545555455689999999999999999999987656 7778888765
No 273
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=83.96 E-value=0.72 Score=33.44 Aligned_cols=18 Identities=28% Similarity=0.043 Sum_probs=14.9
Q ss_pred ceEECcCCCchHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~a 75 (138)
.+|+||.|||||.++...
T Consensus 3 I~l~G~~GsGKsT~a~~L 20 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQI 20 (216)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 358999999999988643
No 274
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=83.88 E-value=0.83 Score=32.01 Aligned_cols=17 Identities=18% Similarity=0.065 Sum_probs=14.5
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
.++++|.|||||.++..
T Consensus 6 I~i~G~~GsGKsT~~~~ 22 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQL 22 (192)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 35999999999998864
No 275
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=83.80 E-value=0.67 Score=32.97 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=14.2
Q ss_pred eEECcCCCchHHHHHHH
Q 042424 59 TLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~a 75 (138)
++++|.|||||.++-..
T Consensus 6 ~l~G~~GaGKSTl~~~L 22 (189)
T 2bdt_A 6 IITGPAGVGKSTTCKRL 22 (189)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHH
Confidence 48999999999987543
No 276
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=83.76 E-value=1.3 Score=33.36 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=19.9
Q ss_pred EECcCCCchHHHHH-HHHHHHHHcCCcEEEE
Q 042424 60 LTNPVYNGKTAVAE-YAIAMAFRDKQRVIYT 89 (138)
Q Consensus 60 l~aPTGsGKTlva~-~ai~~~l~~~~rviyv 89 (138)
.+.-.|.|||.++. +|..-+ +.|.+++++
T Consensus 24 ~s~kGGvGKTT~a~nLA~~la-~~G~~Vlli 53 (262)
T 2ph1_A 24 MSGKGGVGKSTVTALLAVHYA-RQGKKVGIL 53 (262)
T ss_dssp ECSSSCTTHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred EcCCCCCCHHHHHHHHHHHHH-HCCCeEEEE
Confidence 55678899999996 444333 457777764
No 277
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=83.76 E-value=1.3 Score=37.69 Aligned_cols=35 Identities=11% Similarity=-0.052 Sum_probs=24.8
Q ss_pred CceEECcCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 042424 57 HGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSS 91 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P 91 (138)
..++++++|+|||..+..........|.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 34589999999999886433333345888877765
No 278
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=83.73 E-value=4.6 Score=31.60 Aligned_cols=67 Identities=15% Similarity=0.172 Sum_probs=46.2
Q ss_pred CCCchHHHHHHHHHHHH--HcCCcEEEEechHHHHHHHHHHHHHhcCceEEEec--------CCcCC-----------CC
Q 042424 64 VYNGKTAVAEYAIAMAF--RDKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTG--------DVTLS-----------PN 122 (138)
Q Consensus 64 TGsGKTlva~~ai~~~l--~~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tG--------d~~~~-----------~~ 122 (138)
..++|.....-.+...+ ..+.++|++++++.-++..++.|++.--.+..++| +.... .+
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~ 419 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE 419 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTS
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCC
Confidence 55667655444444444 34889999999999999999999884227888888 44332 15
Q ss_pred CCEEEecH
Q 042424 123 ASCLVMTT 130 (138)
Q Consensus 123 ~~IiVtTp 130 (138)
.+|+|+|.
T Consensus 420 ~~vLv~T~ 427 (494)
T 1wp9_A 420 FNVLVATS 427 (494)
T ss_dssp CSEEEECG
T ss_pred ceEEEECC
Confidence 78999984
No 279
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=83.71 E-value=1.4 Score=32.65 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=20.5
Q ss_pred EECcCCCchHHHHH-HHHHHHHHcCCcEEEE
Q 042424 60 LTNPVYNGKTAVAE-YAIAMAFRDKQRVIYT 89 (138)
Q Consensus 60 l~aPTGsGKTlva~-~ai~~~l~~~~rviyv 89 (138)
.+.-.|.|||.++. +|..-+ +.|++++++
T Consensus 8 ~s~kgGvGKTt~a~~LA~~la-~~g~~Vlli 37 (260)
T 3q9l_A 8 TSGKGGVGKTTSSAAIATGLA-QKGKKTVVI 37 (260)
T ss_dssp ECSSTTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred ECCCCCCcHHHHHHHHHHHHH-hCCCcEEEE
Confidence 45667899999997 444433 568888875
No 280
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=83.53 E-value=1.3 Score=35.10 Aligned_cols=30 Identities=23% Similarity=0.218 Sum_probs=22.7
Q ss_pred eEECcCCCchHHHHH-HHHHHHHHcCCcEEEE
Q 042424 59 TLTNPVYNGKTAVAE-YAIAMAFRDKQRVIYT 89 (138)
Q Consensus 59 ~l~aPTGsGKTlva~-~ai~~~l~~~~rviyv 89 (138)
+.++..|.|||.++. +|..-+ +.|+|++++
T Consensus 23 v~sgkGGvGKTTva~~LA~~lA-~~G~rVllv 53 (329)
T 2woo_A 23 FVGGKGGVGKTTTSCSLAIQMS-KVRSSVLLI 53 (329)
T ss_dssp EEECSSSSSHHHHHHHHHHHHH-TSSSCEEEE
T ss_pred EEeCCCCCcHHHHHHHHHHHHH-HCCCeEEEE
Confidence 378889999999986 555433 568888875
No 281
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=83.52 E-value=0.83 Score=35.89 Aligned_cols=15 Identities=20% Similarity=0.270 Sum_probs=13.3
Q ss_pred eEECcCCCchHHHHH
Q 042424 59 TLTNPVYNGKTAVAE 73 (138)
Q Consensus 59 ~l~aPTGsGKTlva~ 73 (138)
.|++|+|||||.++.
T Consensus 35 ~I~G~sGsGKSTla~ 49 (290)
T 1odf_A 35 FFSGPQGSGKSFTSI 49 (290)
T ss_dssp EEECCTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 399999999999885
No 282
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=83.46 E-value=0.72 Score=38.12 Aligned_cols=34 Identities=29% Similarity=0.174 Sum_probs=21.9
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEe
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTS 90 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~ 90 (138)
.+.++.+|+|+|||.+|.. +...+..+...+.+.
T Consensus 64 ~~iLl~GppGtGKT~la~a-la~~l~~~~~~~~~~ 97 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALA-IAQELGSKVPFCPMV 97 (456)
T ss_dssp CEEEEECCTTSSHHHHHHH-HHHHHCTTSCEEEEE
T ss_pred CeEEEECCCcCCHHHHHHH-HHHHhCCCceEEEEe
Confidence 4567999999999998863 333333234444444
No 283
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=83.45 E-value=2.4 Score=34.83 Aligned_cols=52 Identities=12% Similarity=0.063 Sum_probs=39.6
Q ss_pred CCceEECcCCCchHHHHH-HHHHHHHHc-CCcEEEEechHHHHHHHHHHHHHhc
Q 042424 56 THGTLTNPVYNGKTAVAE-YAIAMAFRD-KQRVIYTSSLKALSNQKYRELHKEF 107 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~-~ai~~~l~~-~~rviyv~P~kaLv~Q~~~~l~~~f 107 (138)
+..++..+-+.|||.++. .++..++.. +.++++++|++.-+.+.++.++..+
T Consensus 179 R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 179 RMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp SEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 335699999999999876 444444443 6789999999999988887776643
No 284
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.38 E-value=1.1 Score=38.02 Aligned_cols=33 Identities=21% Similarity=0.080 Sum_probs=21.8
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSS 91 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P 91 (138)
+..++.+|.|+|||++|.....+ -+...+.+..
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e---~~~~fi~vs~ 276 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANR---TDATFIRVIG 276 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHH---HTCEEEEEEG
T ss_pred CceEeeCCCCCcHHHHHHHHHhc---cCCCeEEEEh
Confidence 45669999999999887543322 2555555544
No 285
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=83.33 E-value=0.62 Score=33.65 Aligned_cols=15 Identities=27% Similarity=0.415 Sum_probs=13.3
Q ss_pred eEECcCCCchHHHHH
Q 042424 59 TLTNPVYNGKTAVAE 73 (138)
Q Consensus 59 ~l~aPTGsGKTlva~ 73 (138)
.|.+|+|||||.++-
T Consensus 10 ~i~G~~GsGKSTl~~ 24 (211)
T 3asz_A 10 GIAGGTASGKTTLAQ 24 (211)
T ss_dssp EEEESTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 499999999998875
No 286
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=83.32 E-value=0.74 Score=33.46 Aligned_cols=18 Identities=22% Similarity=0.008 Sum_probs=14.9
Q ss_pred ceEECcCCCchHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~a 75 (138)
.+|++|.|||||.++...
T Consensus 3 I~l~G~~GsGKsT~a~~L 20 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERI 20 (216)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 358999999999988643
No 287
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=83.31 E-value=1.4 Score=37.84 Aligned_cols=31 Identities=13% Similarity=0.005 Sum_probs=20.7
Q ss_pred eEECcCCCchHHHHHHHHHHHHHcCCcEEEE
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFRDKQRVIYT 89 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~~~~rviyv 89 (138)
.|.+|+|||||.............++++++.
T Consensus 297 ~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 297 LMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 3999999999987753222222346777775
No 288
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=83.31 E-value=1.7 Score=33.39 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=22.3
Q ss_pred EECcCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 042424 60 LTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSS 91 (138)
Q Consensus 60 l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P 91 (138)
...-||+|||.++...+....++|.++.|+=|
T Consensus 27 tgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKP 58 (242)
T 3qxc_A 27 SATNTNAGKTTCARLLAQYCNACGVKTILLKP 58 (242)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred EeCCCCCcHHHHHHHHHHHHHhCCCceEEEee
Confidence 34449999999987555444456888888754
No 289
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=83.31 E-value=0.62 Score=37.59 Aligned_cols=18 Identities=17% Similarity=0.145 Sum_probs=14.5
Q ss_pred CCceEECcCCCchHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAE 73 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~ 73 (138)
...+|++|||||||...-
T Consensus 176 ~~i~ivG~sGsGKSTll~ 193 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMK 193 (361)
T ss_dssp CCEEEEESSSSCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 455699999999997654
No 290
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=83.30 E-value=0.79 Score=32.76 Aligned_cols=18 Identities=33% Similarity=0.311 Sum_probs=15.2
Q ss_pred CceEECcCCCchHHHHHH
Q 042424 57 HGTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ 74 (138)
+.+|+++.|||||.++..
T Consensus 12 ~I~l~G~~GsGKSTv~~~ 29 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEM 29 (184)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 456999999999999863
No 291
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=83.23 E-value=0.83 Score=32.88 Aligned_cols=17 Identities=24% Similarity=0.176 Sum_probs=14.5
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
.+|+|+.|||||.++..
T Consensus 21 I~l~G~~GsGKSTla~~ 37 (202)
T 3t61_A 21 IVVMGVSGSGKSSVGEA 37 (202)
T ss_dssp EEEECSTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45999999999998853
No 292
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=83.17 E-value=1.2 Score=37.53 Aligned_cols=34 Identities=9% Similarity=-0.007 Sum_probs=23.3
Q ss_pred ceEECcCCCchHHHHHHH-HHHHHHcCCcEEEEec
Q 042424 58 GTLTNPVYNGKTAVAEYA-IAMAFRDKQRVIYTSS 91 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~a-i~~~l~~~~rviyv~P 91 (138)
.+|.+|+|||||..+... +.-.+..+...+|+.-
T Consensus 42 ~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 349999999999988653 3333333666777754
No 293
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=83.07 E-value=2.1 Score=33.67 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=22.5
Q ss_pred CceE--ECcCCCchHHHHHHHHHHHHHc------CCcEEEEe
Q 042424 57 HGTL--TNPVYNGKTAVAEYAIAMAFRD------KQRVIYTS 90 (138)
Q Consensus 57 ~~~l--~aPTGsGKTlva~~ai~~~l~~------~~rviyv~ 90 (138)
..+| ++|.|+|||.++.......-.. +..++|+.
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 3457 8999999999886554443221 44566665
No 294
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=82.88 E-value=1.3 Score=39.48 Aligned_cols=23 Identities=26% Similarity=0.133 Sum_probs=17.9
Q ss_pred CCceEECcCCCchHHHHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAM 78 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~ 78 (138)
.+.+++||+|+|||.++......
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHH
Confidence 46779999999999988644433
No 295
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=82.68 E-value=0.76 Score=37.12 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=13.4
Q ss_pred ceEECcCCCchHHHHH
Q 042424 58 GTLTNPVYNGKTAVAE 73 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~ 73 (138)
.+|++|||||||.+..
T Consensus 26 ~~i~G~NGaGKTTll~ 41 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFE 41 (365)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3499999999998764
No 296
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=82.65 E-value=1.6 Score=34.90 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=22.7
Q ss_pred EECcCCCchHHHHH-HHHHHHHHcCCcEEEEe
Q 042424 60 LTNPVYNGKTAVAE-YAIAMAFRDKQRVIYTS 90 (138)
Q Consensus 60 l~aPTGsGKTlva~-~ai~~~l~~~~rviyv~ 90 (138)
.++..|.|||.++. +|..-+ +.|+|++++-
T Consensus 31 ~sgKGGvGKTTvA~~LA~~lA-~~G~rVLlvD 61 (349)
T 3ug7_A 31 FGGKGGVGKTTMSAATGVYLA-EKGLKVVIVS 61 (349)
T ss_dssp EECSSSTTHHHHHHHHHHHHH-HSSCCEEEEE
T ss_pred EeCCCCccHHHHHHHHHHHHH-HCCCeEEEEe
Confidence 78889999999996 454433 4588887765
No 297
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=82.61 E-value=0.52 Score=37.89 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=13.6
Q ss_pred ceEECcCCCchHHHHH
Q 042424 58 GTLTNPVYNGKTAVAE 73 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~ 73 (138)
.+++||||+|||.+..
T Consensus 28 ~vi~G~NGaGKT~ile 43 (371)
T 3auy_A 28 VAIIGENGSGKSSIFE 43 (371)
T ss_dssp EEEEECTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3599999999998854
No 298
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=82.52 E-value=0.97 Score=35.64 Aligned_cols=19 Identities=37% Similarity=0.387 Sum_probs=15.4
Q ss_pred CCceEECcCCCchHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ 74 (138)
.+.++.+|+|+|||..+..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ 70 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHI 70 (334)
T ss_dssp CCEEEESSTTSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 3456999999999998753
No 299
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=82.39 E-value=0.88 Score=37.86 Aligned_cols=20 Identities=35% Similarity=0.235 Sum_probs=16.7
Q ss_pred CCceEECcCCCchHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~a 75 (138)
.+.++.+|+|+|||.++...
T Consensus 202 ~~~LL~G~pG~GKT~la~~l 221 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGL 221 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHH
Confidence 46779999999999988643
No 300
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=82.30 E-value=0.97 Score=31.68 Aligned_cols=17 Identities=12% Similarity=-0.111 Sum_probs=14.3
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
.+++++.|||||.++..
T Consensus 6 I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 35999999999998853
No 301
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=82.25 E-value=1.4 Score=37.70 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=19.2
Q ss_pred CCceEECcCCCchHHHHHHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAF 80 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l 80 (138)
.+.+|.++||||||.+....+...+
T Consensus 168 pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 6788999999999998765444433
No 302
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=82.23 E-value=1.6 Score=34.83 Aligned_cols=32 Identities=19% Similarity=0.016 Sum_probs=21.1
Q ss_pred ceEECcCCCchHHHHHHHHHHHHHcCCcEEEE
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYT 89 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv 89 (138)
.+++++.|+|||.++..........|.++.++
T Consensus 82 I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi 113 (355)
T 3p32_A 82 VGITGVPGVGKSTAIEALGMHLIERGHRVAVL 113 (355)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 45999999999998863333323446665544
No 303
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=82.18 E-value=1 Score=31.64 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=15.0
Q ss_pred CceEECcCCCchHHHHHH
Q 042424 57 HGTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ 74 (138)
+.+|++|.|||||.++..
T Consensus 6 ~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 356999999999998853
No 304
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=82.13 E-value=1.5 Score=32.60 Aligned_cols=31 Identities=19% Similarity=0.178 Sum_probs=22.3
Q ss_pred eEECcCCCchHHHHHHHHHHHHHcCCcEEEEe
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTS 90 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~ 90 (138)
++++..|+|||..+........ .|.+++++-
T Consensus 18 ~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 18 VFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp EEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred EEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 4899999999998863333323 677887765
No 305
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=82.08 E-value=0.82 Score=33.88 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=14.0
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
..|.+|+|||||...-.
T Consensus 26 ~~lvGpsGsGKSTLl~~ 42 (218)
T 1z6g_A 26 LVICGPSGVGKGTLIKK 42 (218)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34999999999987753
No 306
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=82.05 E-value=0.51 Score=34.00 Aligned_cols=18 Identities=17% Similarity=0.100 Sum_probs=14.8
Q ss_pred eEECcCCCchHHHHHHHH
Q 042424 59 TLTNPVYNGKTAVAEYAI 76 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai 76 (138)
++.||.|||||..+....
T Consensus 4 ~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 4 AIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHH
Confidence 489999999999886543
No 307
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=82.03 E-value=1.9 Score=31.31 Aligned_cols=31 Identities=16% Similarity=0.013 Sum_probs=19.7
Q ss_pred eEECcCCCchHHHHHHHHHHHH-HcCCcEEEE
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAF-RDKQRVIYT 89 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l-~~~~rviyv 89 (138)
+++++.|||||.++.......- ..|..++++
T Consensus 29 ~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~ 60 (211)
T 1m7g_A 29 WLTGLSASGKSTLAVELEHQLVRDRRVHAYRL 60 (211)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHhccccCCcEEEE
Confidence 4999999999998864322211 235555555
No 308
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=82.02 E-value=1 Score=32.84 Aligned_cols=30 Identities=27% Similarity=0.237 Sum_probs=21.6
Q ss_pred eEECcCCCchHHHHH-HHHHHHHHcCCcEEEE
Q 042424 59 TLTNPVYNGKTAVAE-YAIAMAFRDKQRVIYT 89 (138)
Q Consensus 59 ~l~aPTGsGKTlva~-~ai~~~l~~~~rviyv 89 (138)
++++.-|.|||.++. +|..-+ +.|+|++++
T Consensus 4 ~vs~kGGvGKTt~a~~LA~~la-~~g~~Vlli 34 (254)
T 3kjh_A 4 AVAGKGGVGKTTVAAGLIKIMA-SDYDKIYAV 34 (254)
T ss_dssp EEECSSSHHHHHHHHHHHHHHT-TTCSCEEEE
T ss_pred EEecCCCCCHHHHHHHHHHHHH-HCCCeEEEE
Confidence 367888999999997 444322 458888776
No 309
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=81.99 E-value=1.8 Score=34.00 Aligned_cols=49 Identities=16% Similarity=0.037 Sum_probs=39.6
Q ss_pred cCCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCcCC-----------CCCCEEEecH
Q 042424 82 DKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLS-----------PNASCLVMTT 130 (138)
Q Consensus 82 ~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~~~-----------~~~~IiVtTp 130 (138)
.+.++|++++++.-+++.++.|++.--.+..++|+.... .+.+|+|||.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 334 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 334 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC
Confidence 468899999999999999999988323888899887532 2678999996
No 310
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=81.93 E-value=0.51 Score=34.93 Aligned_cols=16 Identities=44% Similarity=0.515 Sum_probs=9.7
Q ss_pred eEECcCCCchHHHHHH
Q 042424 59 TLTNPVYNGKTAVAEY 74 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ 74 (138)
.|.+|+|||||.++..
T Consensus 31 ~l~Gp~GsGKSTl~~~ 46 (231)
T 3lnc_A 31 VLSSPSGCGKTTVANK 46 (231)
T ss_dssp EEECSCC----CHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 4999999999988753
No 311
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=81.89 E-value=1.1 Score=41.61 Aligned_cols=57 Identities=18% Similarity=0.097 Sum_probs=45.8
Q ss_pred HHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcC--ceEEEecCCcCC-----------CCCCEEEecH
Q 042424 74 YAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFK--DVGLMTGDVTLS-----------PNASCLVMTT 130 (138)
Q Consensus 74 ~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~--~v~~~tGd~~~~-----------~~~~IiVtTp 130 (138)
.++...+.+|.+++++++++.-+++.++.|++.+. .+..++|+.... .+.+|+|||.
T Consensus 803 ~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~ 872 (1151)
T 2eyq_A 803 EAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT 872 (1151)
T ss_dssp HHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS
T ss_pred HHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC
Confidence 45555566789999999999999999999999764 788899987532 2678999995
No 312
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=81.88 E-value=1 Score=31.45 Aligned_cols=17 Identities=35% Similarity=0.216 Sum_probs=14.3
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
..|++|.|||||.++..
T Consensus 11 i~l~G~~GsGKSTl~~~ 27 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASE 27 (175)
T ss_dssp EEEECSTTSCHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHH
Confidence 34999999999998754
No 313
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=81.75 E-value=0.92 Score=32.13 Aligned_cols=18 Identities=17% Similarity=-0.034 Sum_probs=14.7
Q ss_pred ceEECcCCCchHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~a 75 (138)
.+++++.|||||.++...
T Consensus 15 I~l~G~~GsGKsT~a~~L 32 (199)
T 2bwj_A 15 IFIIGGPGSGKGTQCEKL 32 (199)
T ss_dssp EEEEECTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 349999999999988543
No 314
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=81.69 E-value=1.1 Score=31.59 Aligned_cols=18 Identities=22% Similarity=0.115 Sum_probs=14.8
Q ss_pred ceEECcCCCchHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~a 75 (138)
.+++++.|||||.++...
T Consensus 7 I~l~G~~GsGKST~~~~L 24 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRL 24 (186)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 359999999999988643
No 315
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=81.67 E-value=0.94 Score=31.72 Aligned_cols=18 Identities=11% Similarity=-0.090 Sum_probs=14.7
Q ss_pred ceEECcCCCchHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~a 75 (138)
.+++++.|||||.++...
T Consensus 9 I~l~G~~GsGKsT~~~~L 26 (194)
T 1qf9_A 9 VFVLGGPGSGKGTQCANI 26 (194)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 359999999999988643
No 316
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.55 E-value=1.7 Score=36.65 Aligned_cols=33 Identities=15% Similarity=0.045 Sum_probs=22.0
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHcCCcEEEEec
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSS 91 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P 91 (138)
+..++.+|.|+|||++|.....+ -+...+.+..
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e---~~~~fi~v~~ 249 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQ---TSATFLRIVG 249 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHH---HTCEEEEEES
T ss_pred CCCceECCCCchHHHHHHHHHHH---hCCCEEEEEH
Confidence 45669999999999877543332 2555555544
No 317
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=81.53 E-value=0.95 Score=35.25 Aligned_cols=18 Identities=22% Similarity=0.067 Sum_probs=14.7
Q ss_pred ceEECcCCCchHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~a 75 (138)
.+++||.|||||.++...
T Consensus 36 ivl~G~sGsGKSTla~~L 53 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAI 53 (287)
T ss_dssp EEEECCTTSCTHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 359999999999887543
No 318
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=81.47 E-value=1.1 Score=37.91 Aligned_cols=20 Identities=30% Similarity=0.207 Sum_probs=16.2
Q ss_pred CCceEECcCCCchHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~a 75 (138)
.+.+|.+|+|+|||+++...
T Consensus 239 ~~vLL~GppGtGKT~lArai 258 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAV 258 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHH
Confidence 45679999999999987543
No 319
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=81.47 E-value=0.92 Score=32.80 Aligned_cols=17 Identities=24% Similarity=0.143 Sum_probs=14.3
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
.+|++|.|||||.++..
T Consensus 32 i~l~G~~GsGKSTl~~~ 48 (200)
T 4eun_A 32 VVVMGVSGSGKTTIAHG 48 (200)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 44999999999998753
No 320
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=81.45 E-value=1 Score=35.90 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=14.0
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
..|.+|+|||||.....
T Consensus 129 vaIvGpsGsGKSTLl~l 145 (305)
T 2v9p_A 129 LAFIGPPNTGKSMLCNS 145 (305)
T ss_dssp EEEECSSSSSHHHHHHH
T ss_pred EEEECCCCCcHHHHHHH
Confidence 34999999999987653
No 321
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=81.45 E-value=3.1 Score=34.15 Aligned_cols=50 Identities=16% Similarity=0.090 Sum_probs=39.5
Q ss_pred HcCCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCcCC-------CCCCEEEecH
Q 042424 81 RDKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLS-------PNASCLVMTT 130 (138)
Q Consensus 81 ~~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~~~-------~~~~IiVtTp 130 (138)
..+.++++++|++.-+++.++.|++.--.+..++|+.... .+.+|+|||.
T Consensus 175 ~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~ 231 (440)
T 1yks_A 175 ADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILATD 231 (440)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC--------CCCSEEEESS
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecchhHHHHHhhhcCCCceEEEECC
Confidence 3588999999999999999999988423888888854321 1678999995
No 322
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=81.25 E-value=1.1 Score=31.55 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=14.6
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
.+|+++.|||||.++..
T Consensus 5 I~l~G~~GsGKsT~a~~ 21 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRR 21 (184)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45999999999999853
No 323
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=81.21 E-value=0.99 Score=31.87 Aligned_cols=17 Identities=18% Similarity=-0.021 Sum_probs=14.4
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
.+++++.|||||.++..
T Consensus 12 I~l~G~~GsGKsT~~~~ 28 (196)
T 2c95_A 12 IFVVGGPGSGKGTQCEK 28 (196)
T ss_dssp EEEEECTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45999999999998853
No 324
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=81.16 E-value=1 Score=34.21 Aligned_cols=17 Identities=35% Similarity=0.278 Sum_probs=14.4
Q ss_pred CceEECcCCCchHHHHH
Q 042424 57 HGTLTNPVYNGKTAVAE 73 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~ 73 (138)
..+|.+|+|+|||.++.
T Consensus 75 gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCcChHHHHHH
Confidence 35699999999998775
No 325
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=81.00 E-value=1.2 Score=30.87 Aligned_cols=17 Identities=18% Similarity=-0.019 Sum_probs=14.5
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
.+++++.|||||.++..
T Consensus 5 I~l~G~~GsGKsT~a~~ 21 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRE 21 (173)
T ss_dssp EEEESCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45999999999998864
No 326
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=80.91 E-value=0.98 Score=32.89 Aligned_cols=15 Identities=33% Similarity=0.532 Sum_probs=13.1
Q ss_pred eEECcCCCchHHHHH
Q 042424 59 TLTNPVYNGKTAVAE 73 (138)
Q Consensus 59 ~l~aPTGsGKTlva~ 73 (138)
.|.+|+|||||....
T Consensus 24 ~l~GpnGsGKSTLl~ 38 (207)
T 1znw_A 24 VLSGPSAVGKSTVVR 38 (207)
T ss_dssp EEECSTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 499999999998774
No 327
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=80.79 E-value=1 Score=31.67 Aligned_cols=17 Identities=24% Similarity=0.204 Sum_probs=14.3
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
.+++++.|||||.++..
T Consensus 8 I~l~G~~GsGKST~~~~ 24 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQA 24 (193)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 35999999999998853
No 328
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.79 E-value=1.2 Score=34.33 Aligned_cols=37 Identities=19% Similarity=0.158 Sum_probs=23.4
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHH---cCCcEEEEech
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFR---DKQRVIYTSSL 92 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~---~~~rviyv~P~ 92 (138)
.+.++.||.|+|||.++......... ....++.+.+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 34679999999999988643332211 23556666543
No 329
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=80.68 E-value=0.78 Score=34.30 Aligned_cols=18 Identities=22% Similarity=0.349 Sum_probs=14.6
Q ss_pred CceEECcCCCchHHHHHH
Q 042424 57 HGTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ 74 (138)
..+|.+|.|||||..+-.
T Consensus 29 ~i~l~G~~GsGKSTl~k~ 46 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQR 46 (246)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 345999999999988753
No 330
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=80.59 E-value=0.95 Score=35.66 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=20.3
Q ss_pred ceEECcCCCchHHHHHHHHHHHHHcCCcEEEEech
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSL 92 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~ 92 (138)
.+|+++.|||||...-..+. +..+.|+.++.|.
T Consensus 7 ~~i~G~~GaGKTTll~~l~~--~~~~~~~aVi~~d 39 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILN--EQHGYKIAVIENE 39 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHH--SCCCCCEEEECSS
T ss_pred EEEEecCCCCHHHHHHHHHh--hcCCCcEEEEEec
Confidence 35999999999976533221 1235555555553
No 331
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=80.27 E-value=1.1 Score=32.32 Aligned_cols=16 Identities=38% Similarity=0.490 Sum_probs=13.9
Q ss_pred eEECcCCCchHHHHHH
Q 042424 59 TLTNPVYNGKTAVAEY 74 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ 74 (138)
.|.+|.|||||.++..
T Consensus 6 ~l~G~~GsGKST~~~~ 21 (206)
T 1jjv_A 6 GLTGGIGSGKTTIANL 21 (206)
T ss_dssp EEECSTTSCHHHHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 4999999999998853
No 332
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=80.22 E-value=8.5 Score=33.49 Aligned_cols=64 Identities=11% Similarity=0.031 Sum_probs=44.7
Q ss_pred CCchHHHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcC-ceEEEecCCcC-----------CCCCCEEEec
Q 042424 65 YNGKTAVAEYAIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFK-DVGLMTGDVTL-----------SPNASCLVMT 129 (138)
Q Consensus 65 GsGKTlva~~ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~-~v~~~tGd~~~-----------~~~~~IiVtT 129 (138)
..|+-...+-.+...+..+.++|++++++.-++..++.|.+ .+ .+..++|+... +...+|+|+|
T Consensus 421 ~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~-~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT 496 (664)
T 1c4o_A 421 TENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVE-HGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI 496 (664)
T ss_dssp STTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHH-TTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES
T ss_pred ccchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHh-cCCCceeecCCCCHHHHHHHHHHhhcCCceEEEcc
Confidence 34544333333444445689999999999999999999988 44 77778887532 2256788887
No 333
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=80.10 E-value=1.1 Score=32.98 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=14.4
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
.+++||.|||||.++..
T Consensus 10 I~l~G~~GsGKsT~a~~ 26 (227)
T 1zd8_A 10 AVIMGAPGSGKGTVSSR 26 (227)
T ss_dssp EEEEECTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45999999999998853
No 334
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=80.08 E-value=0.9 Score=35.30 Aligned_cols=19 Identities=21% Similarity=-0.069 Sum_probs=16.1
Q ss_pred CCceEECcCCCchHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ 74 (138)
.+.++.+|+|+|||.++..
T Consensus 47 ~~vll~G~pGtGKT~la~~ 65 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNT 65 (331)
T ss_dssp CCEEEESCCCHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 5677999999999988753
No 335
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=80.07 E-value=1.3 Score=33.55 Aligned_cols=21 Identities=33% Similarity=0.257 Sum_probs=16.4
Q ss_pred CceEECcCCCchHHHHHHHHH
Q 042424 57 HGTLTNPVYNGKTAVAEYAIA 77 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ai~ 77 (138)
+.+++||.|+|||.++.....
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHH
Confidence 356999999999998864443
No 336
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=80.01 E-value=2.1 Score=32.03 Aligned_cols=29 Identities=7% Similarity=0.085 Sum_probs=20.9
Q ss_pred EECcCCCchHHHHH-HHHHHHHHcCCcEEEE
Q 042424 60 LTNPVYNGKTAVAE-YAIAMAFRDKQRVIYT 89 (138)
Q Consensus 60 l~aPTGsGKTlva~-~ai~~~l~~~~rviyv 89 (138)
+++.-|.|||.++. +|..-+ +.|+|++++
T Consensus 6 vs~KGGvGKTT~a~nLA~~la-~~G~~Vlli 35 (269)
T 1cp2_A 6 IYGKGGIGKSTTTQNLTSGLH-AMGKTIMVV 35 (269)
T ss_dssp EEECTTSSHHHHHHHHHHHHH-TTTCCEEEE
T ss_pred EecCCCCcHHHHHHHHHHHHH-HCCCcEEEE
Confidence 56778999999986 444333 458888774
No 337
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=80.01 E-value=1.3 Score=30.83 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=16.6
Q ss_pred CCceEECcCCCchHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~a 75 (138)
.+..|+++.|||||.++...
T Consensus 8 ~~i~l~G~~GsGKSTva~~L 27 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQEL 27 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 56679999999999998643
No 338
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=79.92 E-value=0.97 Score=34.63 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=17.3
Q ss_pred CceEECcCCCchHHHHHHHHHHHH
Q 042424 57 HGTLTNPVYNGKTAVAEYAIAMAF 80 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ai~~~l 80 (138)
..++.+|.|+|||..| .++++.+
T Consensus 60 ~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 3569999999999887 4455444
No 339
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=79.83 E-value=1 Score=32.35 Aligned_cols=17 Identities=35% Similarity=0.333 Sum_probs=14.3
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
..|+++.|||||.++-.
T Consensus 4 i~i~G~~GsGKSTl~~~ 20 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQM 20 (204)
T ss_dssp EEEEECTTSSHHHHHHH
T ss_pred EEEECCCCcCHHHHHHH
Confidence 35999999999998854
No 340
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=79.80 E-value=1.1 Score=37.35 Aligned_cols=19 Identities=37% Similarity=0.312 Sum_probs=15.7
Q ss_pred CceEECcCCCchHHHHHHH
Q 042424 57 HGTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~a 75 (138)
+.++++|+|+|||.++...
T Consensus 52 ~vLL~GppGtGKTtlAr~i 70 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVI 70 (447)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 5679999999999887643
No 341
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=79.77 E-value=1 Score=32.00 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=14.4
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
..|+++.|||||.++..
T Consensus 11 I~i~G~~GsGKST~~~~ 27 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAAL 27 (203)
T ss_dssp EEEEECTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34999999999999854
No 342
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=79.76 E-value=0.76 Score=36.68 Aligned_cols=17 Identities=18% Similarity=0.108 Sum_probs=13.9
Q ss_pred CCceEECcCCCchHHHH
Q 042424 56 THGTLTNPVYNGKTAVA 72 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva 72 (138)
...++++|||||||...
T Consensus 172 ~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp CCEEEEESTTSCHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45569999999999754
No 343
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=79.73 E-value=1.2 Score=32.14 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=14.1
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
..|++|+|||||.++..
T Consensus 24 i~i~G~~GsGKSTl~~~ 40 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKN 40 (207)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34999999999988754
No 344
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=79.72 E-value=5.1 Score=33.20 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=39.6
Q ss_pred CCcEEEEechHHHHHHHHHHHHHhcC---ceEEEecCCcCC-----------CCCCEEEecH
Q 042424 83 KQRVIYTSSLKALSNQKYRELHKEFK---DVGLMTGDVTLS-----------PNASCLVMTT 130 (138)
Q Consensus 83 ~~rviyv~P~kaLv~Q~~~~l~~~f~---~v~~~tGd~~~~-----------~~~~IiVtTp 130 (138)
+.++|++++++.-+++.++.|++.+. .+..++|+.... ...+|+|||.
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~ 400 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD 400 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc
Confidence 78999999999999999999998654 678888886532 2678999985
No 345
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=79.72 E-value=4.5 Score=31.79 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=39.3
Q ss_pred cCCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCcCC-----------CCCCEEEecH
Q 042424 82 DKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLS-----------PNASCLVMTT 130 (138)
Q Consensus 82 ~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~~~-----------~~~~IiVtTp 130 (138)
.+.++|+.++++.-++..++.|.+.--.+..++|+.... ...+|+|+|.
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~ 86 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD 86 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec
Confidence 488999999999999999999877322788899987542 1678999984
No 346
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=79.66 E-value=2.5 Score=30.15 Aligned_cols=19 Identities=16% Similarity=0.085 Sum_probs=15.4
Q ss_pred ceEECcCCCchHHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYAI 76 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai 76 (138)
.+++++.|||||.++....
T Consensus 12 I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 12 IVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3499999999999986443
No 347
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=79.48 E-value=1.4 Score=31.60 Aligned_cols=16 Identities=19% Similarity=-0.031 Sum_probs=13.8
Q ss_pred ceEECcCCCchHHHHH
Q 042424 58 GTLTNPVYNGKTAVAE 73 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~ 73 (138)
.+++++.|||||.++.
T Consensus 18 I~l~G~~GsGKsT~~~ 33 (203)
T 1ukz_A 18 IFVLGGPGAGKGTQCE 33 (203)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3499999999999884
No 348
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=79.46 E-value=1.4 Score=31.18 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=14.3
Q ss_pred eEECcCCCchHHHHHHH
Q 042424 59 TLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~a 75 (138)
++.|+.|||||.++...
T Consensus 4 ~i~G~~GsGKsT~~~~L 20 (205)
T 2jaq_A 4 AIFGTVGAGKSTISAEI 20 (205)
T ss_dssp EEECCTTSCHHHHHHHH
T ss_pred EEECCCccCHHHHHHHH
Confidence 58999999999988643
No 349
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=79.40 E-value=1.7 Score=37.92 Aligned_cols=18 Identities=28% Similarity=0.194 Sum_probs=15.5
Q ss_pred CceEECcCCCchHHHHHH
Q 042424 57 HGTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ 74 (138)
+.++.+|+|+|||.++..
T Consensus 490 ~~ll~G~~GtGKT~la~~ 507 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQ 507 (758)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 467999999999998863
No 350
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=79.36 E-value=1.1 Score=34.52 Aligned_cols=17 Identities=35% Similarity=0.305 Sum_probs=14.5
Q ss_pred CceEECcCCCchHHHHH
Q 042424 57 HGTLTNPVYNGKTAVAE 73 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~ 73 (138)
..++.+|.|+|||..+.
T Consensus 46 GvlL~Gp~GtGKTtLak 62 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAK 62 (274)
T ss_dssp EEEEESSTTSCHHHHHH
T ss_pred eEEEECCCCCcHHHHHH
Confidence 35699999999998775
No 351
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=79.29 E-value=1.1 Score=33.58 Aligned_cols=16 Identities=25% Similarity=0.356 Sum_probs=13.8
Q ss_pred eEECcCCCchHHHHHH
Q 042424 59 TLTNPVYNGKTAVAEY 74 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ 74 (138)
.|.+|.|||||.++-.
T Consensus 29 gI~G~~GsGKSTl~k~ 44 (245)
T 2jeo_A 29 GVSGGTASGKSTVCEK 44 (245)
T ss_dssp EEECSTTSSHHHHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 3999999999998853
No 352
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=79.23 E-value=6.1 Score=34.39 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=41.0
Q ss_pred HHHHHHHcCCcEEEEechHHHHHHHHHHHHHhcC-ceEEEecCCcC-----------CCCCCEEEecH
Q 042424 75 AIAMAFRDKQRVIYTSSLKALSNQKYRELHKEFK-DVGLMTGDVTL-----------SPNASCLVMTT 130 (138)
Q Consensus 75 ai~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~f~-~v~~~tGd~~~-----------~~~~~IiVtTp 130 (138)
.+...+..+.++|++++++.-++..++.|++ .+ .+..++|+... +...+|+|+|.
T Consensus 437 ~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~-~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~ 503 (661)
T 2d7d_A 437 EIQARIERNERVLVTTLTKKMSEDLTDYLKE-IGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN 503 (661)
T ss_dssp HHHHHHTTTCEEEEECSSHHHHHHHHHHHHH-TTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC
T ss_pred HHHHHHhcCCeEEEEECCHHHHHHHHHHHHh-cCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc
Confidence 3444445688999999999999999999988 44 77888887532 12567888873
No 353
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=79.20 E-value=0.91 Score=36.00 Aligned_cols=15 Identities=13% Similarity=0.257 Sum_probs=13.3
Q ss_pred eEECcCCCchHHHHH
Q 042424 59 TLTNPVYNGKTAVAE 73 (138)
Q Consensus 59 ~l~aPTGsGKTlva~ 73 (138)
++++|+|||||.+..
T Consensus 27 ~i~G~NGsGKS~lle 41 (339)
T 3qkt_A 27 LIIGQNGSGKSSLLD 41 (339)
T ss_dssp EEECCTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 599999999999864
No 354
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=79.10 E-value=2.2 Score=31.23 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=20.1
Q ss_pred EECcCCCchHHHHH-HHHHHHHHc-CCcEEEE
Q 042424 60 LTNPVYNGKTAVAE-YAIAMAFRD-KQRVIYT 89 (138)
Q Consensus 60 l~aPTGsGKTlva~-~ai~~~l~~-~~rviyv 89 (138)
.+.-.|.|||.++. +|..- -+. |+|++++
T Consensus 10 ~s~kGGvGKTt~a~~LA~~l-a~~~g~~Vlli 40 (245)
T 3ea0_A 10 VSAKGGDGGSCIAANFAFAL-SQEPDIHVLAV 40 (245)
T ss_dssp EESSTTSSHHHHHHHHHHHH-TTSTTCCEEEE
T ss_pred ECCCCCcchHHHHHHHHHHH-HhCcCCCEEEE
Confidence 45667899999997 44432 244 8888776
No 355
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=79.08 E-value=1.4 Score=31.58 Aligned_cols=18 Identities=28% Similarity=0.095 Sum_probs=14.9
Q ss_pred ceEECcCCCchHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~a 75 (138)
.+++++.|||||.++...
T Consensus 23 I~l~G~~GsGKST~a~~L 40 (201)
T 2cdn_A 23 VLLLGPPGAGKGTQAVKL 40 (201)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 459999999999988643
No 356
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=79.06 E-value=1.1 Score=32.41 Aligned_cols=16 Identities=25% Similarity=0.171 Sum_probs=13.5
Q ss_pred ceEECcCCCchHHHHH
Q 042424 58 GTLTNPVYNGKTAVAE 73 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~ 73 (138)
..+.+|.|||||...-
T Consensus 3 i~l~G~nGsGKTTLl~ 18 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVK 18 (178)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3589999999998864
No 357
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=79.01 E-value=4 Score=31.13 Aligned_cols=49 Identities=16% Similarity=0.089 Sum_probs=39.1
Q ss_pred cCCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCcCC-----------CCCCEEEecH
Q 042424 82 DKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLS-----------PNASCLVMTT 130 (138)
Q Consensus 82 ~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~~~-----------~~~~IiVtTp 130 (138)
.+.++|++++++.-+++.++.|++.--.+..++|+.... .+.+|+|+|.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 296 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD 296 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 468899999999999999999988433788888876432 2678999995
No 358
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=79.00 E-value=1.4 Score=34.49 Aligned_cols=20 Identities=25% Similarity=0.162 Sum_probs=15.9
Q ss_pred CceEECcCCCchHHHHHHHH
Q 042424 57 HGTLTNPVYNGKTAVAEYAI 76 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ai 76 (138)
+.++.||.|+|||.++....
T Consensus 48 ~~ll~Gp~G~GKTtla~~la 67 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALA 67 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35799999999999886433
No 359
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=78.83 E-value=1.3 Score=33.60 Aligned_cols=21 Identities=29% Similarity=0.172 Sum_probs=16.5
Q ss_pred CceEECcCCCchHHHHHHHHH
Q 042424 57 HGTLTNPVYNGKTAVAEYAIA 77 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ai~ 77 (138)
+.++.||.|+|||.++.....
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~ 68 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAR 68 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 456999999999998864443
No 360
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=78.76 E-value=2.5 Score=32.13 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=20.8
Q ss_pred EECcCCCchHHHHH-HHHHHHHHcCCcEEEE
Q 042424 60 LTNPVYNGKTAVAE-YAIAMAFRDKQRVIYT 89 (138)
Q Consensus 60 l~aPTGsGKTlva~-~ai~~~l~~~~rviyv 89 (138)
+++..|.|||.++. +|..-+ +.|.|++++
T Consensus 7 vs~KGGvGKTT~a~nLA~~La-~~G~rVlli 36 (289)
T 2afh_E 7 IYGKGGIGKSTTTQNLVAALA-EMGKKVMIV 36 (289)
T ss_dssp EEECTTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred EeCCCcCcHHHHHHHHHHHHH-HCCCeEEEE
Confidence 56788999999997 454433 458888764
No 361
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=78.64 E-value=2.2 Score=32.67 Aligned_cols=28 Identities=18% Similarity=0.109 Sum_probs=18.0
Q ss_pred EECcCCCchHHHHH-HHHHHHHHcCCcEEE
Q 042424 60 LTNPVYNGKTAVAE-YAIAMAFRDKQRVIY 88 (138)
Q Consensus 60 l~aPTGsGKTlva~-~ai~~~l~~~~rviy 88 (138)
.+.-.|.|||.++. +|..-+ +.|+++++
T Consensus 10 ~s~KGGvGKTT~a~nLA~~La-~~G~~Vll 38 (286)
T 2xj4_A 10 GNEKGGAGKSTIAVHLVTALL-YGGAKVAV 38 (286)
T ss_dssp CCSSSCTTHHHHHHHHHHHHH-HTTCCEEE
T ss_pred EcCCCCCCHHHHHHHHHHHHH-HCCCcEEE
Confidence 34568999999996 444332 34666654
No 362
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=78.53 E-value=1.4 Score=32.43 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=13.4
Q ss_pred ceEECcCCCchHHHHH
Q 042424 58 GTLTNPVYNGKTAVAE 73 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~ 73 (138)
.+|.+|+|+|||.+..
T Consensus 26 ~~I~G~NgsGKStil~ 41 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLD 41 (203)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEEcCCCCCHHHHHH
Confidence 3599999999998753
No 363
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=78.45 E-value=1.6 Score=30.08 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=14.6
Q ss_pred ceEECcCCCchHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~a 75 (138)
.+++++.|||||.++...
T Consensus 3 I~l~G~~GsGKsT~a~~L 20 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLL 20 (168)
T ss_dssp EEEESCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 358999999999988543
No 364
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=78.40 E-value=1.2 Score=33.45 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=13.5
Q ss_pred eEECcCCCchHHHHHH
Q 042424 59 TLTNPVYNGKTAVAEY 74 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ 74 (138)
+|++|.|||||...-.
T Consensus 20 ~l~GpsGsGKSTLlk~ 35 (219)
T 1s96_A 20 IVSAPSGAGKSSLIQA 35 (219)
T ss_dssp EEECCTTSCHHHHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 4999999999987643
No 365
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=78.31 E-value=1.3 Score=35.50 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=12.9
Q ss_pred EECcCCCchHHHHH
Q 042424 60 LTNPVYNGKTAVAE 73 (138)
Q Consensus 60 l~aPTGsGKTlva~ 73 (138)
|.||+|||||.++.
T Consensus 97 I~GpsGSGKSTl~~ 110 (321)
T 3tqc_A 97 IAGSVAVGKSTTSR 110 (321)
T ss_dssp EECCTTSSHHHHHH
T ss_pred EECCCCCCHHHHHH
Confidence 99999999999874
No 366
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=78.21 E-value=1.6 Score=31.06 Aligned_cols=18 Identities=17% Similarity=0.036 Sum_probs=14.9
Q ss_pred ceEECcCCCchHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~a 75 (138)
.++.|+.|||||.++...
T Consensus 7 I~i~G~~GsGKsT~~~~L 24 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLL 24 (213)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 359999999999998643
No 367
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=78.08 E-value=1.9 Score=33.71 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=12.8
Q ss_pred EECcCCCchHHHHH
Q 042424 60 LTNPVYNGKTAVAE 73 (138)
Q Consensus 60 l~aPTGsGKTlva~ 73 (138)
|.||.|||||.++.
T Consensus 85 I~G~~GsGKSTl~~ 98 (308)
T 1sq5_A 85 IAGSVAVGKSTTAR 98 (308)
T ss_dssp EEECTTSSHHHHHH
T ss_pred EECCCCCCHHHHHH
Confidence 99999999998875
No 368
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=77.86 E-value=1.4 Score=32.10 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=14.8
Q ss_pred ceEECcCCCchHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~a 75 (138)
.++.+|.|||||.++...
T Consensus 3 I~l~G~~GsGKsT~a~~L 20 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFI 20 (214)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 358999999999988643
No 369
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=77.84 E-value=2.1 Score=37.23 Aligned_cols=26 Identities=12% Similarity=0.061 Sum_probs=20.6
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFR 81 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~ 81 (138)
.+.+|.+.||||||.+....|...+.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~ 240 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILF 240 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHH
Confidence 67889999999999987655555543
No 370
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=77.79 E-value=1.7 Score=32.62 Aligned_cols=28 Identities=18% Similarity=0.154 Sum_probs=20.4
Q ss_pred EECcCCCchHHHHH-HHHHHHHHcCCcEEEE
Q 042424 60 LTNPVYNGKTAVAE-YAIAMAFRDKQRVIYT 89 (138)
Q Consensus 60 l~aPTGsGKTlva~-~ai~~~l~~~~rviyv 89 (138)
.++--|.|||.++. +|..-+ +|.|++++
T Consensus 33 ~s~kGGvGKTT~a~~LA~~la--~g~~Vlli 61 (267)
T 3k9g_A 33 ASIKGGVGKSTSAIILATLLS--KNNKVLLI 61 (267)
T ss_dssp CCSSSSSCHHHHHHHHHHHHT--TTSCEEEE
T ss_pred EeCCCCchHHHHHHHHHHHHH--CCCCEEEE
Confidence 35567899999996 555444 68888776
No 371
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=77.69 E-value=1.4 Score=34.43 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=10.9
Q ss_pred eEECcCCCchHHHHHH
Q 042424 59 TLTNPVYNGKTAVAEY 74 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ 74 (138)
.|+||.|||||.++..
T Consensus 9 gItG~sGSGKSTva~~ 24 (290)
T 1a7j_A 9 SVTGSSGAGTSTVKHT 24 (290)
T ss_dssp EEESCC---CCTHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 3999999999999853
No 372
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=77.58 E-value=4.8 Score=31.32 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=39.6
Q ss_pred cCCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCcCC-----------CCCCEEEecH
Q 042424 82 DKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLS-----------PNASCLVMTT 130 (138)
Q Consensus 82 ~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~~~-----------~~~~IiVtTp 130 (138)
.+.++|++++++.-++..++.|++.--.+..++|+.... ...+|+|+|.
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 324 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN 324 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC
Confidence 468999999999999999999988433888899886532 2678999985
No 373
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=77.42 E-value=1.4 Score=33.33 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=14.0
Q ss_pred ceEECcCCCchHHHHH
Q 042424 58 GTLTNPVYNGKTAVAE 73 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~ 73 (138)
..|.+|.|||||.++-
T Consensus 30 I~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 30 ITVDGPSGAGKGTLCK 45 (252)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3499999999999985
No 374
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=77.27 E-value=3.3 Score=32.33 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=21.1
Q ss_pred EECc-CCCchHHHHH-HHHHHHHHcCCcEEEE
Q 042424 60 LTNP-VYNGKTAVAE-YAIAMAFRDKQRVIYT 89 (138)
Q Consensus 60 l~aP-TGsGKTlva~-~ai~~~l~~~~rviyv 89 (138)
++++ .|.|||.++. +|..-+ ..|+|+++|
T Consensus 109 vts~kgG~GKTtva~nLA~~lA-~~G~rVLLI 139 (299)
T 3cio_A 109 ITGATPDSGKTFVSSTLAAVIA-QSDQKVLFI 139 (299)
T ss_dssp EEESSSSSCHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred EECCCCCCChHHHHHHHHHHHH-hCCCcEEEE
Confidence 5555 6899999986 555444 468898887
No 375
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=77.09 E-value=1.6 Score=31.81 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=14.9
Q ss_pred CceEECcCCCchHHHHHH
Q 042424 57 HGTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ 74 (138)
..++.+|.|||||.++..
T Consensus 7 ~I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 7 KVMISGAPASGKGTQCEL 24 (222)
T ss_dssp CEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 345999999999998864
No 376
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=77.02 E-value=3 Score=32.08 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=20.9
Q ss_pred EECc-CCCchHHHHH-HHHHHHHHcCCcEEEE
Q 042424 60 LTNP-VYNGKTAVAE-YAIAMAFRDKQRVIYT 89 (138)
Q Consensus 60 l~aP-TGsGKTlva~-~ai~~~l~~~~rviyv 89 (138)
++++ .|.|||.++. +|..-+ ..|+|+++|
T Consensus 87 vts~kgG~GKTt~a~nLA~~lA-~~G~rVLLI 117 (271)
T 3bfv_A 87 ITSEAPGAGKSTIAANLAVAYA-QAGYKTLIV 117 (271)
T ss_dssp EECSSTTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHH-hCCCeEEEE
Confidence 5555 6899999986 555444 568888876
No 377
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=76.91 E-value=3.4 Score=29.44 Aligned_cols=19 Identities=11% Similarity=0.113 Sum_probs=15.3
Q ss_pred ceEECcCCCchHHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYAI 76 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai 76 (138)
.+++|+.|||||.++....
T Consensus 13 I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 13 IVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 3499999999999986433
No 378
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=76.85 E-value=1.9 Score=32.30 Aligned_cols=28 Identities=32% Similarity=0.243 Sum_probs=19.9
Q ss_pred ECcCCCchHHHHH-HHHHHHHHcCCcEEEE
Q 042424 61 TNPVYNGKTAVAE-YAIAMAFRDKQRVIYT 89 (138)
Q Consensus 61 ~aPTGsGKTlva~-~ai~~~l~~~~rviyv 89 (138)
+.-.|.|||.++. +|..-+ +.|.|++++
T Consensus 13 s~kGGvGKTt~a~~LA~~la-~~g~~Vlli 41 (257)
T 1wcv_1 13 NQKGGVGKTTTAINLAAYLA-RLGKRVLLV 41 (257)
T ss_dssp CSSCCHHHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred eCCCCchHHHHHHHHHHHHH-HCCCCEEEE
Confidence 4567899999997 444333 458898886
No 379
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.66 E-value=2 Score=32.53 Aligned_cols=22 Identities=18% Similarity=0.043 Sum_probs=17.0
Q ss_pred CceEECcCCCchHHHHHHHHHH
Q 042424 57 HGTLTNPVYNGKTAVAEYAIAM 78 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ai~~ 78 (138)
+.+++||.|+|||.++......
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 3569999999999988654443
No 380
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=76.50 E-value=3.6 Score=31.57 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=21.3
Q ss_pred EECcCCCchHHHHH-HHHHHHHHcCCcEEEE
Q 042424 60 LTNPVYNGKTAVAE-YAIAMAFRDKQRVIYT 89 (138)
Q Consensus 60 l~aPTGsGKTlva~-~ai~~~l~~~~rviyv 89 (138)
+++--|.|||.++. +|..-+ +.|++++++
T Consensus 46 v~~KGGvGKTT~a~nLA~~La-~~G~~Vlli 75 (307)
T 3end_A 46 VYGKGGIGKSTTSSNLSAAFS-ILGKRVLQI 75 (307)
T ss_dssp EECSTTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred EECCCCccHHHHHHHHHHHHH-HCCCeEEEE
Confidence 66788899999997 444333 458888876
No 381
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=76.49 E-value=3.3 Score=30.24 Aligned_cols=28 Identities=18% Similarity=0.050 Sum_probs=19.5
Q ss_pred EECcCCCchHHHHH-HHHHHHHHcCCcEEEE
Q 042424 60 LTNPVYNGKTAVAE-YAIAMAFRDKQRVIYT 89 (138)
Q Consensus 60 l~aPTGsGKTlva~-~ai~~~l~~~~rviyv 89 (138)
.+.-.|.|||.++. +|..-+ +.| +++++
T Consensus 6 ~s~KGGvGKTT~a~~LA~~la-~~g-~Vlli 34 (209)
T 3cwq_A 6 ASFKGGVGKTTTAVHLSAYLA-LQG-ETLLI 34 (209)
T ss_dssp EESSTTSSHHHHHHHHHHHHH-TTS-CEEEE
T ss_pred EcCCCCCcHHHHHHHHHHHHH-hcC-CEEEE
Confidence 46678999999997 444332 457 88774
No 382
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=76.40 E-value=7.2 Score=32.74 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=39.5
Q ss_pred CCcEEEEechHHHHHHHHHHHHHhcC---ceEEEecCCcCC-----------CCCCEEEecH
Q 042424 83 KQRVIYTSSLKALSNQKYRELHKEFK---DVGLMTGDVTLS-----------PNASCLVMTT 130 (138)
Q Consensus 83 ~~rviyv~P~kaLv~Q~~~~l~~~f~---~v~~~tGd~~~~-----------~~~~IiVtTp 130 (138)
+.++|++++++.-++..++.|++.+. .+..++|+.... ...+|+|||.
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~ 349 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD 349 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc
Confidence 68999999999999999999998753 688888886532 2678999985
No 383
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=76.34 E-value=1.8 Score=36.45 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=15.7
Q ss_pred CCceEECcCCCchHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAE 73 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~ 73 (138)
.+.++.+|+|+|||.++.
T Consensus 51 ~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 567799999999999875
No 384
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=76.28 E-value=8.1 Score=31.53 Aligned_cols=53 Identities=9% Similarity=0.192 Sum_probs=36.6
Q ss_pred cCCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCcCC-----------CCCCEEEecHHHHH
Q 042424 82 DKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLS-----------PNASCLVMTTEILR 134 (138)
Q Consensus 82 ~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~~~-----------~~~~IiVtTpe~l~ 134 (138)
.+.+.+++...+.-+++.++.|.+....+..++|+.... .+.+|+|||+..+.
T Consensus 346 ~~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~ 409 (510)
T 2oca_A 346 KDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS 409 (510)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH
T ss_pred cCCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh
Confidence 355555555557777777877877545889999987532 26789999976653
No 385
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=76.09 E-value=2 Score=32.28 Aligned_cols=19 Identities=11% Similarity=-0.115 Sum_probs=15.4
Q ss_pred ceEECcCCCchHHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYAI 76 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai 76 (138)
.++++|.|||||.++....
T Consensus 32 I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 32 YIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4599999999999886433
No 386
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=76.08 E-value=2.6 Score=33.77 Aligned_cols=31 Identities=26% Similarity=0.239 Sum_probs=22.3
Q ss_pred eEECcCCCchHHHHH-HHHHHHHHcCCcEEEEe
Q 042424 59 TLTNPVYNGKTAVAE-YAIAMAFRDKQRVIYTS 90 (138)
Q Consensus 59 ~l~aPTGsGKTlva~-~ai~~~l~~~~rviyv~ 90 (138)
++++.-|.|||.++. +|..-+ ..|+|++++-
T Consensus 20 ~~sgkGGvGKTt~a~~lA~~la-~~g~~vllid 51 (334)
T 3iqw_A 20 FVGGKGGVGKTTTSCSLAIQLA-KVRRSVLLLS 51 (334)
T ss_dssp EEECSTTSSHHHHHHHHHHHHT-TSSSCEEEEE
T ss_pred EEeCCCCccHHHHHHHHHHHHH-hCCCcEEEEE
Confidence 378889999999986 444332 4578887765
No 387
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=76.03 E-value=1.9 Score=31.38 Aligned_cols=17 Identities=29% Similarity=0.200 Sum_probs=14.4
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
.++.++.|||||.++..
T Consensus 7 I~l~G~~GsGKsT~a~~ 23 (220)
T 1aky_A 7 MVLIGPPGAGKGTQAPN 23 (220)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45999999999998854
No 388
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=75.89 E-value=1.5 Score=38.40 Aligned_cols=20 Identities=35% Similarity=0.235 Sum_probs=16.8
Q ss_pred CCceEECcCCCchHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~a 75 (138)
.+.++.+|+|+|||.++...
T Consensus 202 ~~vLL~G~pGtGKT~la~~l 221 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAEGL 221 (758)
T ss_dssp CEEEEESCTTTTTHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHH
Confidence 56789999999999988633
No 389
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=75.65 E-value=1.6 Score=30.96 Aligned_cols=18 Identities=17% Similarity=-0.014 Sum_probs=14.9
Q ss_pred ceEECcCCCchHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~a 75 (138)
.+++++.|||||.++...
T Consensus 7 I~l~G~~GsGKsT~~~~L 24 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNI 24 (204)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 359999999999988643
No 390
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=75.62 E-value=1.8 Score=36.55 Aligned_cols=20 Identities=30% Similarity=0.222 Sum_probs=16.0
Q ss_pred CCceEECcCCCchHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~a 75 (138)
...+|.+|+|+|||+++...
T Consensus 50 ~gvLL~GppGtGKT~Larai 69 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAV 69 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 44669999999999987543
No 391
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=75.29 E-value=2 Score=32.22 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=14.0
Q ss_pred eEECcCCCchHHHHHH
Q 042424 59 TLTNPVYNGKTAVAEY 74 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ 74 (138)
.|+++.|||||.++..
T Consensus 26 ~I~G~~GSGKST~a~~ 41 (252)
T 1uj2_A 26 GVSGGTASGKSSVCAK 41 (252)
T ss_dssp EEECSTTSSHHHHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 4999999999999863
No 392
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=75.09 E-value=2 Score=31.58 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=15.2
Q ss_pred ceEECcCCCchHHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYAI 76 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai 76 (138)
..|+++.|||||.++.+..
T Consensus 15 IgltG~~GSGKSTva~~L~ 33 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILK 33 (192)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3499999999999986443
No 393
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=75.04 E-value=2.2 Score=30.34 Aligned_cols=15 Identities=40% Similarity=0.658 Sum_probs=13.5
Q ss_pred eEECcCCCchHHHHH
Q 042424 59 TLTNPVYNGKTAVAE 73 (138)
Q Consensus 59 ~l~aPTGsGKTlva~ 73 (138)
.|+++.|||||.++.
T Consensus 6 ~i~G~~GsGKst~~~ 20 (208)
T 3ake_A 6 TIDGPSASGKSSVAR 20 (208)
T ss_dssp EEECSTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 499999999999985
No 394
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=74.88 E-value=4.2 Score=32.48 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=13.8
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
..|.+++|+|||.....
T Consensus 77 v~lvG~pgaGKSTLln~ 93 (349)
T 2www_A 77 VGLSGPPGAGKSTFIEY 93 (349)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHH
Confidence 34999999999987653
No 395
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=74.68 E-value=1.4 Score=31.98 Aligned_cols=16 Identities=38% Similarity=0.466 Sum_probs=13.9
Q ss_pred eEECcCCCchHHHHHH
Q 042424 59 TLTNPVYNGKTAVAEY 74 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ 74 (138)
.|+++.|||||.++..
T Consensus 8 ~i~G~~GSGKST~~~~ 23 (218)
T 1vht_A 8 ALTGGIGSGKSTVANA 23 (218)
T ss_dssp EEECCTTSCHHHHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 4999999999998853
No 396
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=74.66 E-value=4.1 Score=30.31 Aligned_cols=30 Identities=30% Similarity=0.368 Sum_probs=20.4
Q ss_pred eEECcCCCchHHHHHHHHHHHHH-cCCcEEEE
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFR-DKQRVIYT 89 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~-~~~rviyv 89 (138)
++.+|.|||||..+..... .+. .|..++.+
T Consensus 10 ~~eG~~gsGKsT~~~~l~~-~l~~~~~~v~~~ 40 (213)
T 4edh_A 10 TLEGPEGAGKSTNRDYLAE-RLRERGIEVQLT 40 (213)
T ss_dssp EEECSTTSSHHHHHHHHHH-HHHTTTCCEEEE
T ss_pred EEEcCCCCCHHHHHHHHHH-HHHHcCCCcccc
Confidence 4899999999998865443 343 45555444
No 397
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=74.64 E-value=2.2 Score=33.11 Aligned_cols=18 Identities=22% Similarity=0.161 Sum_probs=14.8
Q ss_pred ceEECcCCCchHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~a 75 (138)
.+++||.|+|||.++...
T Consensus 41 ~ll~G~~G~GKT~la~~l 58 (373)
T 1jr3_A 41 YLFSGTRGVGKTSIARLL 58 (373)
T ss_dssp EEEESCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 359999999999988533
No 398
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=74.60 E-value=4.4 Score=30.80 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=19.2
Q ss_pred CcCCCchHHHHH-HHHHHHHHcCCcEEEE
Q 042424 62 NPVYNGKTAVAE-YAIAMAFRDKQRVIYT 89 (138)
Q Consensus 62 aPTGsGKTlva~-~ai~~~l~~~~rviyv 89 (138)
.--|.|||.++. +|..-+ ..|.|++++
T Consensus 44 ~KGGvGKTT~a~nLA~~la-~~G~rVlli 71 (298)
T 2oze_A 44 FKGGVGKSKLSTMFAYLTD-KLNLKVLMI 71 (298)
T ss_dssp SSSSSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CCCCchHHHHHHHHHHHHH-hCCCeEEEE
Confidence 478999999997 444333 468888774
No 399
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=74.44 E-value=2.2 Score=31.42 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=14.4
Q ss_pred eEECcCCCchHHHHHHH
Q 042424 59 TLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~a 75 (138)
++.+|.|||||.++...
T Consensus 4 ~l~G~~GsGKsT~a~~L 20 (223)
T 2xb4_A 4 LIFGPNGSGKGTQGNLV 20 (223)
T ss_dssp EEECCTTSCHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 58999999999988643
No 400
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=74.43 E-value=2 Score=31.76 Aligned_cols=19 Identities=26% Similarity=0.214 Sum_probs=15.3
Q ss_pred CceEECcCCCchHHHHHHH
Q 042424 57 HGTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~a 75 (138)
+.++.++.|||||.++...
T Consensus 18 ~I~l~G~~GsGKsT~a~~L 36 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKL 36 (233)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3559999999999988643
No 401
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.29 E-value=1.5 Score=34.03 Aligned_cols=17 Identities=24% Similarity=0.071 Sum_probs=14.5
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
.++.||.|+|||..+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~ 55 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMA 55 (354)
T ss_dssp EEEECSTTSSHHHHHHT
T ss_pred EEEECCCCCCHHHHHHH
Confidence 56999999999988753
No 402
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=74.27 E-value=1.3 Score=37.65 Aligned_cols=18 Identities=22% Similarity=0.117 Sum_probs=15.7
Q ss_pred CCceEECcCCCchHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAE 73 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~ 73 (138)
.+.++.||+|+|||.++.
T Consensus 42 ~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp CEEEEECCSSSSHHHHHH
T ss_pred CeeEeecCchHHHHHHHH
Confidence 567899999999998775
No 403
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=74.26 E-value=3.9 Score=31.53 Aligned_cols=49 Identities=22% Similarity=0.296 Sum_probs=39.3
Q ss_pred cCCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCcCC-----------CCCCEEEecH
Q 042424 82 DKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLS-----------PNASCLVMTT 130 (138)
Q Consensus 82 ~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~~~-----------~~~~IiVtTp 130 (138)
.+.++|++++++.-++..++.|++..-.+..++|+.... .+.+|+|+|.
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 301 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN 301 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC
Confidence 368999999999999999999988433888899876532 2677999985
No 404
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=74.14 E-value=1.6 Score=32.85 Aligned_cols=17 Identities=24% Similarity=0.137 Sum_probs=14.4
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
.++++|.|||||.++..
T Consensus 35 i~l~G~~GsGKSTla~~ 51 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIHRI 51 (253)
T ss_dssp EEEESCGGGTTHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45999999999998754
No 405
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=73.98 E-value=2.3 Score=30.73 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=14.5
Q ss_pred eEECcCCCchHHHHHHHH
Q 042424 59 TLTNPVYNGKTAVAEYAI 76 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai 76 (138)
.|++|+|||||.++...+
T Consensus 6 ~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 6 SIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp EEEESCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 488999999998875443
No 406
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=73.90 E-value=4.1 Score=31.70 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=20.5
Q ss_pred EECcCCCchHHHHH-HHHHHHHHcCCcEEEE
Q 042424 60 LTNPVYNGKTAVAE-YAIAMAFRDKQRVIYT 89 (138)
Q Consensus 60 l~aPTGsGKTlva~-~ai~~~l~~~~rviyv 89 (138)
.++-.|.|||.++. +|..-+ ..|+|+++|
T Consensus 98 ts~kgG~GKTtva~nLA~~lA-~~G~rVLLI 127 (286)
T 3la6_A 98 TGVSPSIGMTFVCANLAAVIS-QTNKRVLLI 127 (286)
T ss_dssp EESSSSSSHHHHHHHHHHHHH-TTTCCEEEE
T ss_pred ECCCCCCcHHHHHHHHHHHHH-hCCCCEEEE
Confidence 33446899999997 555443 458888887
No 407
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=73.87 E-value=6.9 Score=30.26 Aligned_cols=49 Identities=10% Similarity=-0.076 Sum_probs=38.8
Q ss_pred cCCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCcC-----------CCCCCEEEecH
Q 042424 82 DKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTL-----------SPNASCLVMTT 130 (138)
Q Consensus 82 ~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~~-----------~~~~~IiVtTp 130 (138)
.+.++|++++++.-++..++.|++.--.+..++|+... +.+.+|+|+|.
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 308 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 308 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC
Confidence 47899999999999999999998842378888887642 22678999983
No 408
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=73.85 E-value=3.6 Score=33.60 Aligned_cols=49 Identities=14% Similarity=-0.005 Sum_probs=38.9
Q ss_pred cCCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCcCC-------CCCCEEEecH
Q 042424 82 DKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLS-------PNASCLVMTT 130 (138)
Q Consensus 82 ~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~~~-------~~~~IiVtTp 130 (138)
.+.++++++|++.-+++.++.|++.--.++.++|+.... ...+|+|||.
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTTTHHHHTTHHHHSCCSEEEECG
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCccHHHHHHhhcCCCCeEEEECc
Confidence 367899999999999999999988522889999874321 2678999995
No 409
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=73.71 E-value=4.2 Score=32.34 Aligned_cols=31 Identities=13% Similarity=0.038 Sum_probs=18.7
Q ss_pred eEECcCCCchHHHHHHHHHHHHHcCCcEEEE
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFRDKQRVIYT 89 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~~~~rviyv 89 (138)
.+.+|+|+|||......+-.....+.++.++
T Consensus 59 ~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~ 89 (337)
T 2qm8_A 59 GITGVPGVGKSTTIDALGSLLTAAGHKVAVL 89 (337)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEECCCCCCHHHHHHHHHHhhhhCCCEEEEE
Confidence 4999999999976643222222235555444
No 410
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=73.69 E-value=2.8 Score=32.23 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=20.3
Q ss_pred eEECcCCCchHHHHHHHHHHHHHcCCcEEEEech
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTSSL 92 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~P~ 92 (138)
++.+|+|+|||.++..... .+ +..++++-..
T Consensus 52 L~~G~~G~GKT~la~~la~-~l--~~~~~~i~~~ 82 (324)
T 3u61_B 52 LHSPSPGTGKTTVAKALCH-DV--NADMMFVNGS 82 (324)
T ss_dssp EECSSTTSSHHHHHHHHHH-HT--TEEEEEEETT
T ss_pred EeeCcCCCCHHHHHHHHHH-Hh--CCCEEEEccc
Confidence 4778899999988754332 22 5566666544
No 411
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=73.68 E-value=2.4 Score=43.11 Aligned_cols=41 Identities=24% Similarity=0.209 Sum_probs=24.6
Q ss_pred CceEECcCCCchHHHHH-HHH-HHHHHcCCcEEEEechHHHHH
Q 042424 57 HGTLTNPVYNGKTAVAE-YAI-AMAFRDKQRVIYTSSLKALSN 97 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~-~ai-~~~l~~~~rviyv~P~kaLv~ 97 (138)
..++.||||||||.+.- ++- +..+......+++..-+++..
T Consensus 925 gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~~t~ 967 (2695)
T 4akg_A 925 ALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTK 967 (2695)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTTSCH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCH
Confidence 45599999999999874 222 122222233566666666643
No 412
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=73.55 E-value=8.7 Score=31.52 Aligned_cols=49 Identities=10% Similarity=0.028 Sum_probs=38.5
Q ss_pred cCCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCcCC-------CCCCEEEecH
Q 042424 82 DKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLS-------PNASCLVMTT 130 (138)
Q Consensus 82 ~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~~~-------~~~~IiVtTp 130 (138)
.++++|+++|++.-+++.++.|++.--.+..++|+.... ...+|+|||.
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~ 244 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDTEYPKCKNGDWDFVITTD 244 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTTCCCCCGGGSSSCCCSEEEESS
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHHHHHHHHhhccCCCceEEEECC
Confidence 478999999999999999999988422788888864322 1678999994
No 413
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=73.19 E-value=3.4 Score=33.12 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=22.5
Q ss_pred EECcCCCchHHHHH-HHHHHHH-HcCCcEEEEe
Q 042424 60 LTNPVYNGKTAVAE-YAIAMAF-RDKQRVIYTS 90 (138)
Q Consensus 60 l~aPTGsGKTlva~-~ai~~~l-~~~~rviyv~ 90 (138)
.++-.|.|||.++. +|+.-+. ..|+|++++-
T Consensus 23 ~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD 55 (354)
T 2woj_A 23 VGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIS 55 (354)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred EeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 77889999999996 5555442 4578887753
No 414
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=73.00 E-value=1.6 Score=32.94 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=12.1
Q ss_pred eEECcCCCchHHHH
Q 042424 59 TLTNPVYNGKTAVA 72 (138)
Q Consensus 59 ~l~aPTGsGKTlva 72 (138)
.|.+|+|||||...
T Consensus 35 ~iiG~nGsGKSTLl 48 (235)
T 3tif_A 35 SIMGPSGSGKSTML 48 (235)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCCcHHHHH
Confidence 49999999999754
No 415
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=72.75 E-value=2.7 Score=32.13 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=14.0
Q ss_pred ceEECcCCCchHHHHH
Q 042424 58 GTLTNPVYNGKTAVAE 73 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~ 73 (138)
..|.+|.|||||.++.
T Consensus 12 i~i~G~~GsGKsTla~ 27 (233)
T 3r20_A 12 VAVDGPAGTGKSSVSR 27 (233)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3499999999999885
No 416
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=72.51 E-value=1.7 Score=33.17 Aligned_cols=17 Identities=18% Similarity=-0.113 Sum_probs=14.3
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
.+++++.|||||.++..
T Consensus 5 I~l~G~~GsGKST~a~~ 21 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWARE 21 (301)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 35999999999998853
No 417
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=72.46 E-value=7.1 Score=31.58 Aligned_cols=48 Identities=17% Similarity=0.027 Sum_probs=38.4
Q ss_pred CCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCcCC-----------CCCCEEEecH
Q 042424 83 KQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLS-----------PNASCLVMTT 130 (138)
Q Consensus 83 ~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~~~-----------~~~~IiVtTp 130 (138)
+.++|++++++.-++..++.|++.--.+..++|+.... .+.+|+|||.
T Consensus 300 ~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~ 358 (434)
T 2db3_A 300 ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS 358 (434)
T ss_dssp CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG
T ss_pred CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch
Confidence 55699999999999999999988423788899986532 2678999995
No 418
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=72.46 E-value=3.9 Score=32.70 Aligned_cols=30 Identities=30% Similarity=0.256 Sum_probs=21.5
Q ss_pred EECcCCCchHHHHH-HHHHHHHHcCCcEEEEe
Q 042424 60 LTNPVYNGKTAVAE-YAIAMAFRDKQRVIYTS 90 (138)
Q Consensus 60 l~aPTGsGKTlva~-~ai~~~l~~~~rviyv~ 90 (138)
.++--|.|||.++. +|..-+ +.|++++++=
T Consensus 149 ~s~KGGvGKTT~a~nLA~~La-~~g~rVlliD 179 (373)
T 3fkq_A 149 TSPCGGVGTSTVAAACAIAHA-NMGKKVFYLN 179 (373)
T ss_dssp ECSSTTSSHHHHHHHHHHHHH-HHTCCEEEEE
T ss_pred ECCCCCChHHHHHHHHHHHHH-hCCCCEEEEE
Confidence 44568899999997 444433 4588998875
No 419
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=72.45 E-value=1.7 Score=30.37 Aligned_cols=17 Identities=29% Similarity=0.190 Sum_probs=10.3
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
.+++++.|||||.++..
T Consensus 8 I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 8 IWINGPFGVGKTHTAHT 24 (183)
T ss_dssp EEEECCC----CHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34999999999998864
No 420
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=72.33 E-value=7.5 Score=32.59 Aligned_cols=49 Identities=10% Similarity=0.019 Sum_probs=39.5
Q ss_pred cCCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCcC-----------CCCCCEEEecH
Q 042424 82 DKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTL-----------SPNASCLVMTT 130 (138)
Q Consensus 82 ~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~~-----------~~~~~IiVtTp 130 (138)
.+.++|+.++++.-+++.++.|++.--.+..++|+... +.+.+|+|+|.
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~ 294 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV 294 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 47799999999999999999998843378888887653 22678999995
No 421
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=72.31 E-value=4.1 Score=32.77 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=22.9
Q ss_pred EECcCCCchHHHHH-HHHHHHH-HcCCcEEEEe
Q 042424 60 LTNPVYNGKTAVAE-YAIAMAF-RDKQRVIYTS 90 (138)
Q Consensus 60 l~aPTGsGKTlva~-~ai~~~l-~~~~rviyv~ 90 (138)
+++.-|.|||.++. +|..-+. ..|+|++++-
T Consensus 23 ~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 23 VGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred EeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 78889999999996 5554442 4588877764
No 422
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=72.12 E-value=4.2 Score=30.96 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=20.2
Q ss_pred ceEECcCCCchHHHHHHHHHHHHHcCCcEEEEe
Q 042424 58 GTLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTS 90 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~ 90 (138)
.+|.||.|+|||.......... +..++|+.
T Consensus 33 v~i~G~~G~GKT~L~~~~~~~~---~~~~~~~~ 62 (357)
T 2fna_A 33 TLVLGLRRTGKSSIIKIGINEL---NLPYIYLD 62 (357)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH---TCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhc---CCCEEEEE
Confidence 3599999999998876444332 23456653
No 423
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=72.11 E-value=2.6 Score=34.46 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=22.8
Q ss_pred eEECcCCCchHHHHHHHHHHHHHcCCcEEEEe
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFRDKQRVIYTS 90 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~~~~rviyv~ 90 (138)
++++..|.|||.++..........|+|++++-
T Consensus 6 ~~~gkGG~GKTt~a~~la~~la~~g~~vllvd 37 (374)
T 3igf_A 6 TFLGKSGVARTKIAIAAAKLLASQGKRVLLAG 37 (374)
T ss_dssp EEECSBHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Confidence 47788899999999733333335688887765
No 424
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=72.07 E-value=4.6 Score=31.97 Aligned_cols=16 Identities=25% Similarity=0.160 Sum_probs=13.3
Q ss_pred ceEECcCCCchHHHHH
Q 042424 58 GTLTNPVYNGKTAVAE 73 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~ 73 (138)
..+.+++|+|||....
T Consensus 59 i~i~G~~g~GKSTl~~ 74 (341)
T 2p67_A 59 LGVTGTPGAGKSTFLE 74 (341)
T ss_dssp EEEEECTTSCHHHHHH
T ss_pred EEEEcCCCCCHHHHHH
Confidence 3489999999998765
No 425
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=71.81 E-value=2.4 Score=36.96 Aligned_cols=21 Identities=33% Similarity=0.213 Sum_probs=17.1
Q ss_pred CCceEECcCCCchHHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYAI 76 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai 76 (138)
.+.++++|+|+|||.++....
T Consensus 208 ~~vlL~G~~GtGKT~la~~la 228 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEGLA 228 (758)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHH
Confidence 467799999999999886433
No 426
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=71.79 E-value=4.7 Score=34.16 Aligned_cols=30 Identities=27% Similarity=0.081 Sum_probs=22.2
Q ss_pred eEECcCCCchHHHHH-HHHHHHHHcCCcEEEE
Q 042424 59 TLTNPVYNGKTAVAE-YAIAMAFRDKQRVIYT 89 (138)
Q Consensus 59 ~l~aPTGsGKTlva~-~ai~~~l~~~~rviyv 89 (138)
+.++..|.|||.++. +|.. ..+.|.+++++
T Consensus 331 ~~~~~~g~Gktt~a~~lA~~-l~~~g~~vllv 361 (589)
T 1ihu_A 331 MLMGKGGVGKTTMAAAIAVR-LADMGFDVHLT 361 (589)
T ss_dssp EEECSTTSSHHHHHHHHHHH-HHHTTCCEEEE
T ss_pred EEecCCCCChhhHHHHHHHH-HHHCCCcEEEE
Confidence 478999999999986 4443 33568888775
No 427
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=71.38 E-value=2.2 Score=33.72 Aligned_cols=14 Identities=29% Similarity=0.404 Sum_probs=12.9
Q ss_pred EECcCCCchHHHHH
Q 042424 60 LTNPVYNGKTAVAE 73 (138)
Q Consensus 60 l~aPTGsGKTlva~ 73 (138)
|.||+|||||..+-
T Consensus 95 I~G~sGsGKSTL~~ 108 (312)
T 3aez_A 95 VAGSVAVGKSTTAR 108 (312)
T ss_dssp EECCTTSCHHHHHH
T ss_pred EECCCCchHHHHHH
Confidence 99999999998874
No 428
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=70.86 E-value=3.2 Score=30.79 Aligned_cols=18 Identities=22% Similarity=0.191 Sum_probs=14.5
Q ss_pred eEECcCCCchHHHHHHHH
Q 042424 59 TLTNPVYNGKTAVAEYAI 76 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai 76 (138)
++.+|.||||+..|....
T Consensus 4 il~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 4 VFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 588999999998876433
No 429
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=70.82 E-value=2.9 Score=30.50 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=14.7
Q ss_pred ceEECcCCCchHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~a 75 (138)
.++.++.|||||.++...
T Consensus 8 I~l~G~~GsGKsT~a~~L 25 (217)
T 3be4_A 8 LILIGAPGSGKGTQCEFI 25 (217)
T ss_dssp EEEEECTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 458999999999988643
No 430
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=70.72 E-value=2.8 Score=35.65 Aligned_cols=17 Identities=35% Similarity=0.321 Sum_probs=14.7
Q ss_pred CceEECcCCCchHHHHH
Q 042424 57 HGTLTNPVYNGKTAVAE 73 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~ 73 (138)
..++.+|+|+|||.++.
T Consensus 110 ~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp EEEEESSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45699999999998875
No 431
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=70.58 E-value=1.6 Score=34.30 Aligned_cols=16 Identities=19% Similarity=0.439 Sum_probs=13.6
Q ss_pred ceEECcCCCchHHHHH
Q 042424 58 GTLTNPVYNGKTAVAE 73 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~ 73 (138)
.+|.+|+|||||.+..
T Consensus 27 ~~i~G~NGsGKS~ll~ 42 (322)
T 1e69_A 27 TAIVGPNGSGKSNIID 42 (322)
T ss_dssp EEEECCTTTCSTHHHH
T ss_pred EEEECCCCCcHHHHHH
Confidence 3599999999998864
No 432
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=70.28 E-value=7.8 Score=33.39 Aligned_cols=31 Identities=3% Similarity=0.064 Sum_probs=25.3
Q ss_pred HHHHHHcCCcEEEEechHHHHHHHHHHHHHh
Q 042424 76 IAMAFRDKQRVIYTSSLKALSNQKYRELHKE 106 (138)
Q Consensus 76 i~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~ 106 (138)
+.+.+..++++|+++|++.-+++.++.+.+.
T Consensus 245 ~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~ 275 (715)
T 2va8_A 245 TLDSLSKNGQVLVFRNSRKMAESTALKIANY 275 (715)
T ss_dssp HHHHHTTTCCEEEECSSHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCEEEEECCHHHHHHHHHHHHHH
Confidence 3344456899999999999999999998864
No 433
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=70.14 E-value=6 Score=34.94 Aligned_cols=50 Identities=12% Similarity=-0.026 Sum_probs=40.0
Q ss_pred cCCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCcCC----CCCCEEEecHH
Q 042424 82 DKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLS----PNASCLVMTTE 131 (138)
Q Consensus 82 ~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~~~----~~~~IiVtTpe 131 (138)
.+.++|++++++.-+++.++.|++.--.+..++|+...+ ...+|+|+|..
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~er~~~~~~VLVATdV 448 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVIPTIGDVVVVATDA 448 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGGSCSSSCEEEEECTT
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHhCCCcEEEECCh
Confidence 478999999999999999999988322888899887543 25589999963
No 434
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=70.07 E-value=3.3 Score=37.40 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=19.4
Q ss_pred CCCCccCCCC-CCCceEECcCCCchHHHHH
Q 042424 45 PSCYTLTTDE-TTHGTLTNPVYNGKTAVAE 73 (138)
Q Consensus 45 p~~y~~~~~~-~~~~~l~aPTGsGKTlva~ 73 (138)
|.-|..+... .+..++.+|.|+|||+++.
T Consensus 227 p~~f~~~g~~~p~GILL~GPPGTGKT~LAr 256 (806)
T 3cf2_A 227 PALFKAIGVKPPRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CGGGTSCCCCCCCEEEEECCTTSCHHHHHH
T ss_pred HHHHhhcCCCCCCeEEEECCCCCCHHHHHH
Confidence 4445443322 2456799999999998875
No 435
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=69.71 E-value=3.9 Score=36.88 Aligned_cols=19 Identities=26% Similarity=0.158 Sum_probs=15.5
Q ss_pred CCceEECcCCCchHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ 74 (138)
+..++.+|.|+|||++|..
T Consensus 512 ~gvLl~GPPGtGKT~lAka 530 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKA 530 (806)
T ss_dssp SCCEEESSTTSSHHHHHHH
T ss_pred ceEEEecCCCCCchHHHHH
Confidence 4567999999999987643
No 436
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=69.39 E-value=8.4 Score=30.15 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=38.8
Q ss_pred cCCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCcCC-----------CCCCEEEecH
Q 042424 82 DKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLS-----------PNASCLVMTT 130 (138)
Q Consensus 82 ~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~~~-----------~~~~IiVtTp 130 (138)
.+.++|++++++.-+++.++.|++.--.+..++|+.... .+.+|+|+|.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~ 334 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD 334 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC
Confidence 357899999999999999999988323788899886532 2677999985
No 437
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=68.95 E-value=3.8 Score=33.47 Aligned_cols=16 Identities=13% Similarity=-0.020 Sum_probs=13.7
Q ss_pred ceEECcCCCchHHHHH
Q 042424 58 GTLTNPVYNGKTAVAE 73 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~ 73 (138)
.+++++.|||||.++.
T Consensus 261 Iil~G~pGSGKSTla~ 276 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQ 276 (416)
T ss_dssp EEEESCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3499999999999875
No 438
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=68.94 E-value=6.8 Score=30.52 Aligned_cols=49 Identities=6% Similarity=-0.056 Sum_probs=38.5
Q ss_pred cCCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCcC-----------CCCCCEEEecH
Q 042424 82 DKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTL-----------SPNASCLVMTT 130 (138)
Q Consensus 82 ~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~~-----------~~~~~IiVtTp 130 (138)
.+.++|++++++.-++..++.|++.--.+..++|+... +.+.+|+|+|.
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 316 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD 316 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC
Confidence 46799999999999999999998843378888887643 12668999984
No 439
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=68.52 E-value=2.3 Score=33.13 Aligned_cols=15 Identities=13% Similarity=0.127 Sum_probs=12.6
Q ss_pred eEECcCCCchHHHHH
Q 042424 59 TLTNPVYNGKTAVAE 73 (138)
Q Consensus 59 ~l~aPTGsGKTlva~ 73 (138)
.|.+|+|||||...-
T Consensus 38 ~iiGpnGsGKSTLl~ 52 (275)
T 3gfo_A 38 AILGGNGVGKSTLFQ 52 (275)
T ss_dssp EEECCTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 499999999997653
No 440
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=68.51 E-value=2.3 Score=32.08 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=12.1
Q ss_pred eEECcCCCchHHHH
Q 042424 59 TLTNPVYNGKTAVA 72 (138)
Q Consensus 59 ~l~aPTGsGKTlva 72 (138)
.|.+|+|||||...
T Consensus 35 ~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 35 AVVGQVGCGKSSLL 48 (237)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 49999999999754
No 441
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=68.11 E-value=4.2 Score=31.18 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=15.7
Q ss_pred CCceEECcCCCchHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ 74 (138)
...+|.++.|||||.++..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp CCEEEECSTTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4456999999999998853
No 442
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=68.10 E-value=3.4 Score=29.38 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=12.8
Q ss_pred eEECcCCCchHHHHH
Q 042424 59 TLTNPVYNGKTAVAE 73 (138)
Q Consensus 59 ~l~aPTGsGKTlva~ 73 (138)
.|.+|.|||||...-
T Consensus 37 ~L~G~nGaGKTTLlr 51 (158)
T 1htw_A 37 YLNGDLGAGKTTLTR 51 (158)
T ss_dssp EEECSTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 499999999998764
No 443
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=68.06 E-value=3.2 Score=35.24 Aligned_cols=19 Identities=32% Similarity=0.212 Sum_probs=15.5
Q ss_pred CCceEECcCCCchHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ 74 (138)
...+|.+|+|+|||+++..
T Consensus 65 ~GvLL~GppGtGKTtLara 83 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARA 83 (499)
T ss_dssp SEEEEECSSSSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3467999999999988753
No 444
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=67.67 E-value=5.8 Score=29.99 Aligned_cols=31 Identities=19% Similarity=0.113 Sum_probs=17.9
Q ss_pred eEECcCCCchHHHHHHHHHHHHHc----CCcEEEE
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFRD----KQRVIYT 89 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~~----~~rviyv 89 (138)
++.+|.|||||..+.....+.-.. |..++++
T Consensus 29 ~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 29 TFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp EEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 489999999999886544332223 6666544
No 445
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=67.58 E-value=8.7 Score=33.22 Aligned_cols=30 Identities=20% Similarity=0.213 Sum_probs=24.7
Q ss_pred HHHHHcCCcEEEEechHHHHHHHHHHHHHh
Q 042424 77 AMAFRDKQRVIYTSSLKALSNQKYRELHKE 106 (138)
Q Consensus 77 ~~~l~~~~rviyv~P~kaLv~Q~~~~l~~~ 106 (138)
.+.+..++++|+++|++.-++..++.+.+.
T Consensus 231 ~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~ 260 (720)
T 2zj8_A 231 YDAIRKKKGALIFVNMRRKAERVALELSKK 260 (720)
T ss_dssp HHHHHTTCCEEEECSCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEecCHHHHHHHHHHHHHH
Confidence 334567899999999999999999888764
No 446
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=67.53 E-value=2.5 Score=32.63 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=12.2
Q ss_pred eEECcCCCchHHHH
Q 042424 59 TLTNPVYNGKTAVA 72 (138)
Q Consensus 59 ~l~aPTGsGKTlva 72 (138)
.|.+|+|||||...
T Consensus 41 ~liG~nGsGKSTLl 54 (266)
T 4g1u_C 41 AIIGPNGAGKSTLL 54 (266)
T ss_dssp EEECCTTSCHHHHH
T ss_pred EEECCCCCcHHHHH
Confidence 49999999999764
No 447
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=67.52 E-value=5.7 Score=29.61 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=14.7
Q ss_pred eEECcCCCchHHHHHHHH
Q 042424 59 TLTNPVYNGKTAVAEYAI 76 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai 76 (138)
++.+|.|||||..+....
T Consensus 30 ~i~G~~GsGKsT~~~~l~ 47 (229)
T 4eaq_A 30 TFEGPEGSGKTTVINEVY 47 (229)
T ss_dssp EEECCTTSCHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHH
Confidence 499999999999875443
No 448
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=67.51 E-value=4 Score=29.41 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=14.0
Q ss_pred ceEECcCCCchHHHHH
Q 042424 58 GTLTNPVYNGKTAVAE 73 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~ 73 (138)
..|+++.|||||.++.
T Consensus 6 i~i~G~~gsGkst~~~ 21 (219)
T 2h92_A 6 IALDGPAAAGKSTIAK 21 (219)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3599999999999985
No 449
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=67.49 E-value=2.7 Score=31.26 Aligned_cols=15 Identities=33% Similarity=0.211 Sum_probs=13.2
Q ss_pred eEECcCCCchHHHHH
Q 042424 59 TLTNPVYNGKTAVAE 73 (138)
Q Consensus 59 ~l~aPTGsGKTlva~ 73 (138)
.|.+|.|||||...-
T Consensus 26 ~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 26 FGLGPAGSGKTYLAM 40 (208)
T ss_dssp EEECCTTSSTTHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 499999999998874
No 450
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=66.97 E-value=4.3 Score=30.56 Aligned_cols=16 Identities=19% Similarity=0.044 Sum_probs=13.5
Q ss_pred eEECcCCCchHHHHHH
Q 042424 59 TLTNPVYNGKTAVAEY 74 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ 74 (138)
+|.+|.||||+..|..
T Consensus 33 ~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 33 FVLGGPGSGKGTQCEK 48 (217)
T ss_dssp EEECCTTCCHHHHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 3889999999988754
No 451
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=66.92 E-value=2.2 Score=36.74 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=15.6
Q ss_pred CceEECcCCCchHHHHHH
Q 042424 57 HGTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ 74 (138)
+.++.||+|+|||.++.+
T Consensus 329 ~vLL~GppGtGKT~LAr~ 346 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQF 346 (595)
T ss_dssp CEEEEESSCCTHHHHHHS
T ss_pred ceEEECCCchHHHHHHHH
Confidence 678999999999988753
No 452
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=66.84 E-value=2.9 Score=42.47 Aligned_cols=20 Identities=30% Similarity=0.265 Sum_probs=16.5
Q ss_pred CCceEECcCCCchHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~a 75 (138)
.+.+++||||+|||.++.-+
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~ 1287 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNA 1287 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 57789999999999887433
No 453
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=66.81 E-value=5.7 Score=31.80 Aligned_cols=30 Identities=20% Similarity=0.025 Sum_probs=21.2
Q ss_pred EECcCCCchHHHHH-HHHHHHH-----HcCCcEEEE
Q 042424 60 LTNPVYNGKTAVAE-YAIAMAF-----RDKQRVIYT 89 (138)
Q Consensus 60 l~aPTGsGKTlva~-~ai~~~l-----~~~~rviyv 89 (138)
.++--|.|||.++. +|..-+. ..|.|+++|
T Consensus 114 ~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlli 149 (398)
T 3ez2_A 114 SNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVI 149 (398)
T ss_dssp CCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEE
T ss_pred EeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 44667899999996 5554443 358888776
No 454
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=66.80 E-value=8.8 Score=27.97 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=21.4
Q ss_pred eEECcCCCchHHHHHHHHHHHHHcCCcEEEE
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFRDKQRVIYT 89 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~~~~rviyv 89 (138)
++-|+-|||||..+.+...+.-.+|..++++
T Consensus 4 ~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 4 TFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 3779999999998865443333357777665
No 455
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=66.62 E-value=10 Score=32.52 Aligned_cols=49 Identities=16% Similarity=0.021 Sum_probs=39.5
Q ss_pred cCCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCcCC-----------CCCCEEEecH
Q 042424 82 DKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLS-----------PNASCLVMTT 130 (138)
Q Consensus 82 ~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~~~-----------~~~~IiVtTp 130 (138)
.+.++|+.++++.-+++.++.|++.--.+..++|+.... .+.+|||+|.
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~ 325 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV 325 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 368999999999999999999988323888898887532 2678999994
No 456
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=66.56 E-value=2.7 Score=31.75 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=12.6
Q ss_pred eEECcCCCchHHHHH
Q 042424 59 TLTNPVYNGKTAVAE 73 (138)
Q Consensus 59 ~l~aPTGsGKTlva~ 73 (138)
.|.+|+|||||...-
T Consensus 32 ~i~G~nGsGKSTLl~ 46 (243)
T 1mv5_A 32 AFAGPSGGGKSTIFS 46 (243)
T ss_dssp EEECCTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 499999999997653
No 457
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=66.46 E-value=7.6 Score=29.50 Aligned_cols=31 Identities=10% Similarity=0.097 Sum_probs=20.5
Q ss_pred eEECcCCCchHHHHHHHHHHHHHcCCc-EEEE
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFRDKQR-VIYT 89 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~~~~r-viyv 89 (138)
++.++.|||||..+.......-..|.. ++++
T Consensus 31 ~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 31 VIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp EEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 499999999999886544433234655 4433
No 458
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=66.41 E-value=3.7 Score=29.98 Aligned_cols=16 Identities=38% Similarity=0.320 Sum_probs=13.5
Q ss_pred ceEECcCCCchHHHHH
Q 042424 58 GTLTNPVYNGKTAVAE 73 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~ 73 (138)
..+.+|+|+|||....
T Consensus 4 i~i~G~nG~GKTTll~ 19 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIH 19 (189)
T ss_dssp EEEESCCSSCHHHHHH
T ss_pred EEEECCCCChHHHHHH
Confidence 3589999999998764
No 459
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=66.19 E-value=3.7 Score=31.18 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=12.7
Q ss_pred eEECcCCCchHHHHH
Q 042424 59 TLTNPVYNGKTAVAE 73 (138)
Q Consensus 59 ~l~aPTGsGKTlva~ 73 (138)
.|.+|.|||||...-
T Consensus 28 ~liG~nGsGKSTLl~ 42 (240)
T 2onk_A 28 VLLGPTGAGKSVFLE 42 (240)
T ss_dssp EEECCTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 499999999997653
No 460
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=66.17 E-value=2.8 Score=37.49 Aligned_cols=19 Identities=32% Similarity=0.216 Sum_probs=15.5
Q ss_pred CCceEECcCCCchHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ 74 (138)
.+.+|++|+|+|||.++..
T Consensus 239 ~~vLL~Gp~GtGKTtLara 257 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARA 257 (806)
T ss_dssp CEEEECSCTTSSHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHH
Confidence 4567999999999987753
No 461
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=66.16 E-value=2.8 Score=31.91 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=13.0
Q ss_pred ceEECcCCCchHHHHH
Q 042424 58 GTLTNPVYNGKTAVAE 73 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~ 73 (138)
..|.+|+|||||....
T Consensus 38 ~~i~G~nGsGKSTLl~ 53 (247)
T 2ff7_A 38 IGIVGRSGSGKSTLTK 53 (247)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3499999999997653
No 462
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=66.11 E-value=2.8 Score=31.41 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=12.1
Q ss_pred eEECcCCCchHHHH
Q 042424 59 TLTNPVYNGKTAVA 72 (138)
Q Consensus 59 ~l~aPTGsGKTlva 72 (138)
.|.+|.|||||...
T Consensus 38 ~i~G~nGsGKSTLl 51 (229)
T 2pze_A 38 AVAGSTGAGKTSLL 51 (229)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 49999999999764
No 463
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=65.78 E-value=2.6 Score=35.44 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=26.2
Q ss_pred CCceEECcCCCchHHHHHHHHHHHHHc--CCcEEEEechHHHHHHHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYAIAMAFRD--KQRVIYTSSLKALSNQKYRELHK 105 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ai~~~l~~--~~rviyv~P~kaLv~Q~~~~l~~ 105 (138)
.+..|.+|+|+|||.++.......-.+ +..++| .++.|..++..+
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~-----~lIGER~~Ev~~ 221 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMV-----LLIDERPEEVTE 221 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEE-----EEESSCHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEE-----EEecCChHHHHH
Confidence 455699999999999885433222122 233444 245555555554
No 464
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=65.76 E-value=2.6 Score=31.52 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=12.1
Q ss_pred eEECcCCCchHHHH
Q 042424 59 TLTNPVYNGKTAVA 72 (138)
Q Consensus 59 ~l~aPTGsGKTlva 72 (138)
.|.+|.|||||...
T Consensus 34 ~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 34 SIIGASGSGKSTLL 47 (224)
T ss_dssp EEEECTTSCHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 49999999999764
No 465
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=65.51 E-value=2.9 Score=31.55 Aligned_cols=14 Identities=36% Similarity=0.283 Sum_probs=12.2
Q ss_pred eEECcCCCchHHHH
Q 042424 59 TLTNPVYNGKTAVA 72 (138)
Q Consensus 59 ~l~aPTGsGKTlva 72 (138)
.|.+|.|||||...
T Consensus 36 ~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 36 TLIGANGAGKTTTL 49 (240)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 49999999999764
No 466
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=65.44 E-value=4.5 Score=32.31 Aligned_cols=29 Identities=31% Similarity=0.353 Sum_probs=20.8
Q ss_pred EECcCCCchHHHHH-HHHHHHHHcCCcEEEE
Q 042424 60 LTNPVYNGKTAVAE-YAIAMAFRDKQRVIYT 89 (138)
Q Consensus 60 l~aPTGsGKTlva~-~ai~~~l~~~~rviyv 89 (138)
.+.--|.|||.++. +|..-+ ..|+|+++|
T Consensus 7 ~s~KGGvGKTT~a~nLA~~LA-~~G~rVLlI 36 (361)
T 3pg5_A 7 FNNKGGVGKTTLSTNVAHYFA-LQGKRVLYV 36 (361)
T ss_dssp CCSSCCHHHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred EcCCCCCcHHHHHHHHHHHHH-hCCCcEEEE
Confidence 44567899999997 454433 468898887
No 467
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=65.40 E-value=2.9 Score=31.88 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=12.2
Q ss_pred eEECcCCCchHHHH
Q 042424 59 TLTNPVYNGKTAVA 72 (138)
Q Consensus 59 ~l~aPTGsGKTlva 72 (138)
.|.+|+|||||...
T Consensus 37 ~liG~nGsGKSTLl 50 (257)
T 1g6h_A 37 LIIGPNGSGKSTLI 50 (257)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 49999999999764
No 468
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=65.31 E-value=2.9 Score=32.03 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=13.1
Q ss_pred ceEECcCCCchHHHHH
Q 042424 58 GTLTNPVYNGKTAVAE 73 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~ 73 (138)
..|.+|+|||||...-
T Consensus 49 ~~i~G~nGsGKSTLl~ 64 (260)
T 2ghi_A 49 CALVGHTGSGKSTIAK 64 (260)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3499999999997653
No 469
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=65.19 E-value=3 Score=32.04 Aligned_cols=14 Identities=14% Similarity=0.268 Sum_probs=12.1
Q ss_pred eEECcCCCchHHHH
Q 042424 59 TLTNPVYNGKTAVA 72 (138)
Q Consensus 59 ~l~aPTGsGKTlva 72 (138)
.|.+|.|||||...
T Consensus 36 ~liG~nGsGKSTLl 49 (262)
T 1b0u_A 36 SIIGSSGSGKSTFL 49 (262)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 49999999999764
No 470
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=68.73 E-value=1.3 Score=31.19 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=35.1
Q ss_pred CCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCcCC-----------CCCCEEEecH
Q 042424 83 KQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTLS-----------PNASCLVMTT 130 (138)
Q Consensus 83 ~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~~~-----------~~~~IiVtTp 130 (138)
+.++|+.++++.-++..++.|++.--.+..++|+.... .+.+|+|+|.
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~ 88 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD 88 (170)
Confidence 57899999999999999988877322666777765432 1567888884
No 471
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=64.95 E-value=3.9 Score=31.40 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=13.4
Q ss_pred ceEECcCCCchHHHHH
Q 042424 58 GTLTNPVYNGKTAVAE 73 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~ 73 (138)
..|.+|+|||||...-
T Consensus 49 ~~l~G~NGsGKSTLlk 64 (267)
T 2zu0_C 49 HAIMGPNGSGKSTLSA 64 (267)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3499999999998764
No 472
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=64.69 E-value=4.1 Score=30.93 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=13.0
Q ss_pred eEECcCCCchHHHHH
Q 042424 59 TLTNPVYNGKTAVAE 73 (138)
Q Consensus 59 ~l~aPTGsGKTlva~ 73 (138)
.|.+|.|||||...-
T Consensus 33 ~l~G~nGsGKSTLlk 47 (250)
T 2d2e_A 33 ALMGPNGAGKSTLGK 47 (250)
T ss_dssp EEECSTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 499999999998764
No 473
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=64.68 E-value=6.8 Score=32.05 Aligned_cols=49 Identities=14% Similarity=0.010 Sum_probs=38.7
Q ss_pred cCCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCcC-------CCCCCEEEecH
Q 042424 82 DKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTL-------SPNASCLVMTT 130 (138)
Q Consensus 82 ~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~~-------~~~~~IiVtTp 130 (138)
.+.++|+++|++.-+++.++.|++.--.+..++|+... +...+|+|||.
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~ 242 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD 242 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTHHHHGGGGGSSCCSEEEECG
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHHHHHHHhhccCCceEEEECC
Confidence 46799999999999999999998742278888887542 22678999995
No 474
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=64.63 E-value=3.1 Score=31.10 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=13.0
Q ss_pred ceEECcCCCchHHHHH
Q 042424 58 GTLTNPVYNGKTAVAE 73 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~ 73 (138)
..|.+|.|||||...-
T Consensus 38 ~~iiG~NGsGKSTLlk 53 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLK 53 (214)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3499999999997653
No 475
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=64.56 E-value=4.3 Score=29.99 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=14.3
Q ss_pred ceEECcCCCchHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ 74 (138)
..|+++.|||||.++..
T Consensus 19 i~i~G~~gsGKst~~~~ 35 (236)
T 1q3t_A 19 IAIDGPASSGKSTVAKI 35 (236)
T ss_dssp EEEECSSCSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 44999999999998853
No 476
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=63.99 E-value=2.4 Score=33.61 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=13.2
Q ss_pred ceEECcCCCchHHHHH
Q 042424 58 GTLTNPVYNGKTAVAE 73 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~ 73 (138)
..|.+|+|||||...-
T Consensus 83 vaivG~sGsGKSTLl~ 98 (306)
T 3nh6_A 83 LALVGPSGAGKSTILR 98 (306)
T ss_dssp EEEESSSCHHHHHHHH
T ss_pred EEEECCCCchHHHHHH
Confidence 4599999999997653
No 477
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=63.88 E-value=9.3 Score=28.39 Aligned_cols=30 Identities=10% Similarity=0.094 Sum_probs=19.5
Q ss_pred eEECcCCCchHHHHHHHHHHHHHcCC-cEEE
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFRDKQ-RVIY 88 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~~~~-rviy 88 (138)
++.++.|||||..+.....+.-..|. .+++
T Consensus 7 ~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~ 37 (213)
T 4tmk_A 7 VIEGLEGAGKTTARNVVVETLEQLGIRDMVF 37 (213)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCCccee
Confidence 48999999999988654433223454 4443
No 478
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=63.69 E-value=7 Score=34.27 Aligned_cols=51 Identities=12% Similarity=0.031 Sum_probs=39.8
Q ss_pred HcCCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCcC-------CCCCCEEEecHH
Q 042424 81 RDKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTL-------SPNASCLVMTTE 131 (138)
Q Consensus 81 ~~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~~-------~~~~~IiVtTpe 131 (138)
..+.++|+++|++.-+++.++.|++.--.+..++|+... +.+.+|+|||..
T Consensus 408 ~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTdv 465 (673)
T 2wv9_A 408 DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRKSYDTEYPKCKNGDWDFVITTDI 465 (673)
T ss_dssp SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSSSHHHHGGGGGTCCCSEEEECGG
T ss_pred hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChHHHHHHHHHHHCCCceEEEECch
Confidence 357899999999999999999998842288999986421 226789999953
No 479
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=63.28 E-value=4.3 Score=34.72 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=15.8
Q ss_pred CCceEECcCCCchHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEY 74 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~ 74 (138)
...++.+|+|+|||.++..
T Consensus 61 ~~vll~Gp~GtGKTtlar~ 79 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQA 79 (604)
T ss_dssp CCEEEECCTTSSHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHH
Confidence 4667999999999988753
No 480
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=63.20 E-value=3.4 Score=31.73 Aligned_cols=14 Identities=14% Similarity=0.240 Sum_probs=12.2
Q ss_pred eEECcCCCchHHHH
Q 042424 59 TLTNPVYNGKTAVA 72 (138)
Q Consensus 59 ~l~aPTGsGKTlva 72 (138)
.|.+|.|||||...
T Consensus 37 ~liG~nGsGKSTLl 50 (266)
T 2yz2_A 37 LVAGNTGSGKSTLL 50 (266)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCCcHHHHH
Confidence 49999999999764
No 481
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=63.08 E-value=3.5 Score=30.47 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=12.8
Q ss_pred eEECcCCCchHHHHH
Q 042424 59 TLTNPVYNGKTAVAE 73 (138)
Q Consensus 59 ~l~aPTGsGKTlva~ 73 (138)
.+.+|.|||||..+.
T Consensus 24 ~i~G~~GsGKSTl~~ 38 (230)
T 2vp4_A 24 LIEGNIGSGKTTYLN 38 (230)
T ss_dssp EEECSTTSCHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 399999999998664
No 482
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=62.71 E-value=5.2 Score=31.36 Aligned_cols=16 Identities=44% Similarity=0.451 Sum_probs=14.3
Q ss_pred ceEECcCCCchHHHHH
Q 042424 58 GTLTNPVYNGKTAVAE 73 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~ 73 (138)
.++.+|.|+|||+.+.
T Consensus 107 ~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 107 IWLFGPATTGKTNIAE 122 (267)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 4599999999999887
No 483
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=62.61 E-value=2.8 Score=32.32 Aligned_cols=16 Identities=13% Similarity=0.077 Sum_probs=13.2
Q ss_pred ceEECcCCCchHHHHH
Q 042424 58 GTLTNPVYNGKTAVAE 73 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~ 73 (138)
..+.||+|+|||...-
T Consensus 5 v~lvG~nGaGKSTLln 20 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVN 20 (270)
T ss_dssp EEEEESSSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 4599999999997753
No 484
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=62.59 E-value=3.5 Score=31.47 Aligned_cols=14 Identities=14% Similarity=0.140 Sum_probs=12.2
Q ss_pred eEECcCCCchHHHH
Q 042424 59 TLTNPVYNGKTAVA 72 (138)
Q Consensus 59 ~l~aPTGsGKTlva 72 (138)
.|.+|.|||||...
T Consensus 35 ~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 35 AVLGQNGCGKSTLL 48 (253)
T ss_dssp EEECCSSSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 49999999999764
No 485
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=62.45 E-value=3.5 Score=31.78 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=13.0
Q ss_pred ceEECcCCCchHHHHH
Q 042424 58 GTLTNPVYNGKTAVAE 73 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~ 73 (138)
..|.+|.|||||...-
T Consensus 53 ~~liG~NGsGKSTLlk 68 (263)
T 2olj_A 53 VVVIGPSGSGKSTFLR 68 (263)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEEcCCCCcHHHHHH
Confidence 3499999999997653
No 486
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=62.43 E-value=3.6 Score=31.59 Aligned_cols=15 Identities=33% Similarity=0.355 Sum_probs=12.6
Q ss_pred eEECcCCCchHHHHH
Q 042424 59 TLTNPVYNGKTAVAE 73 (138)
Q Consensus 59 ~l~aPTGsGKTlva~ 73 (138)
.|.+|.|||||...-
T Consensus 45 ~l~G~NGsGKSTLlk 59 (256)
T 1vpl_A 45 GLIGPNGAGKTTTLR 59 (256)
T ss_dssp EEECCTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 499999999997653
No 487
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=62.30 E-value=3.6 Score=31.77 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=12.9
Q ss_pred ceEECcCCCchHHHHH
Q 042424 58 GTLTNPVYNGKTAVAE 73 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~ 73 (138)
..|.+|.|||||...-
T Consensus 48 ~~i~G~nGsGKSTLlk 63 (271)
T 2ixe_A 48 TALVGPNGSGKSTVAA 63 (271)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3499999999997653
No 488
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=62.29 E-value=7.4 Score=27.77 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=15.1
Q ss_pred CceEECcCCCchHHHHHHHH
Q 042424 57 HGTLTNPVYNGKTAVAEYAI 76 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~~ai 76 (138)
..++.++.|+|||......+
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~ 51 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTI 51 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 45599999999998765333
No 489
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=62.10 E-value=3.7 Score=31.40 Aligned_cols=15 Identities=27% Similarity=0.394 Sum_probs=12.6
Q ss_pred eEECcCCCchHHHHH
Q 042424 59 TLTNPVYNGKTAVAE 73 (138)
Q Consensus 59 ~l~aPTGsGKTlva~ 73 (138)
.|.+|.|||||....
T Consensus 30 ~liG~NGsGKSTLlk 44 (249)
T 2qi9_C 30 HLVGPNGAGKSTLLA 44 (249)
T ss_dssp EEECCTTSSHHHHHH
T ss_pred EEECCCCCcHHHHHH
Confidence 499999999997653
No 490
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=62.02 E-value=3.6 Score=31.95 Aligned_cols=15 Identities=27% Similarity=0.060 Sum_probs=12.6
Q ss_pred ceEECcCCCchHHHH
Q 042424 58 GTLTNPVYNGKTAVA 72 (138)
Q Consensus 58 ~~l~aPTGsGKTlva 72 (138)
..|.+|.|||||...
T Consensus 50 ~~liG~NGsGKSTLl 64 (279)
T 2ihy_A 50 WILYGLNGAGKTTLL 64 (279)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 349999999999764
No 491
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=61.74 E-value=4.5 Score=36.09 Aligned_cols=20 Identities=25% Similarity=0.137 Sum_probs=16.2
Q ss_pred CCceEECcCCCchHHHHHHH
Q 042424 56 THGTLTNPVYNGKTAVAEYA 75 (138)
Q Consensus 56 ~~~~l~aPTGsGKTlva~~a 75 (138)
.+.++.+|+|+|||.++...
T Consensus 512 ~~vLL~GppGtGKT~Lakal 531 (806)
T 1ypw_A 512 KGVLFYGPPGCGKTLLAKAI 531 (806)
T ss_dssp CCCCCBCCTTSSHHHHHHHH
T ss_pred ceeEEECCCCCCHHHHHHHH
Confidence 45679999999999987543
No 492
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=61.47 E-value=1.9 Score=32.77 Aligned_cols=15 Identities=27% Similarity=0.257 Sum_probs=12.7
Q ss_pred eEECcCCCchHHHHH
Q 042424 59 TLTNPVYNGKTAVAE 73 (138)
Q Consensus 59 ~l~aPTGsGKTlva~ 73 (138)
.|.+|+|||||.+..
T Consensus 31 ~i~GpnGsGKSTll~ 45 (227)
T 1qhl_A 31 TLSGGNGAGKSTTMA 45 (227)
T ss_dssp HHHSCCSHHHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 489999999998754
No 493
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=61.08 E-value=11 Score=28.38 Aligned_cols=30 Identities=13% Similarity=-0.020 Sum_probs=20.7
Q ss_pred eEECcCCCchHHHHHHHHHHHHH-cCCcEEE
Q 042424 59 TLTNPVYNGKTAVAEYAIAMAFR-DKQRVIY 88 (138)
Q Consensus 59 ~l~aPTGsGKTlva~~ai~~~l~-~~~rviy 88 (138)
++.++.|||||..+.......-. .|..+++
T Consensus 25 ~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 25 TFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred EEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 38999999999998654443333 4656665
No 494
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=60.95 E-value=6.2 Score=30.90 Aligned_cols=21 Identities=10% Similarity=-0.183 Sum_probs=16.4
Q ss_pred ceEECcCCCchHHHHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYAIAM 78 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~~ 78 (138)
.++.||.|.|||.++......
T Consensus 27 ~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 27 LLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHHHH
Confidence 469999999999988744433
No 495
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=60.68 E-value=13 Score=33.74 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=40.2
Q ss_pred cCCcEEEEechHHHHHHHHHHHHHhcC-ceEEEecCCcCCC-----------C--CCEEEec
Q 042424 82 DKQRVIYTSSLKALSNQKYRELHKEFK-DVGLMTGDVTLSP-----------N--ASCLVMT 129 (138)
Q Consensus 82 ~~~rviyv~P~kaLv~Q~~~~l~~~f~-~v~~~tGd~~~~~-----------~--~~IiVtT 129 (138)
.+.++|++++++.-++...+.|++.++ .+..++|+..... + .+|+|||
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT 563 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS 563 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec
Confidence 478999999999999999999987566 8899999876431 3 7899998
No 496
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=60.17 E-value=4.7 Score=32.01 Aligned_cols=17 Identities=12% Similarity=0.171 Sum_probs=14.2
Q ss_pred CceEECcCCCchHHHHH
Q 042424 57 HGTLTNPVYNGKTAVAE 73 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~ 73 (138)
...|.+|+|||||..+.
T Consensus 172 k~~IvG~nGsGKSTLlk 188 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVN 188 (365)
T ss_dssp EEEEECCTTSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 45599999999998764
No 497
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=60.07 E-value=5.5 Score=32.34 Aligned_cols=16 Identities=19% Similarity=0.416 Sum_probs=13.5
Q ss_pred ceEECcCCCchHHHHH
Q 042424 58 GTLTNPVYNGKTAVAE 73 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~ 73 (138)
.+|.+|+|||||.+..
T Consensus 29 ~~i~G~nG~GKstll~ 44 (430)
T 1w1w_A 29 TSIIGPNGSGKSNMMD 44 (430)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3599999999998764
No 498
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=59.78 E-value=7.6 Score=28.96 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=15.8
Q ss_pred ceEECcCCCchHHHHHHHHH
Q 042424 58 GTLTNPVYNGKTAVAEYAIA 77 (138)
Q Consensus 58 ~~l~aPTGsGKTlva~~ai~ 77 (138)
.+++++.|+|||..++..+.
T Consensus 19 vli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 19 VLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEESSSSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 45999999999987765543
No 499
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=59.56 E-value=11 Score=32.49 Aligned_cols=50 Identities=14% Similarity=0.008 Sum_probs=39.6
Q ss_pred HcCCcEEEEechHHHHHHHHHHHHHhcCceEEEecCCcC-------CCCCCEEEecH
Q 042424 81 RDKQRVIYTSSLKALSNQKYRELHKEFKDVGLMTGDVTL-------SPNASCLVMTT 130 (138)
Q Consensus 81 ~~~~rviyv~P~kaLv~Q~~~~l~~~f~~v~~~tGd~~~-------~~~~~IiVtTp 130 (138)
..+.++|++++++.-+++.++.|++..-.+..++|+... +.+.+|||||.
T Consensus 353 ~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd 409 (618)
T 2whx_A 353 DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD 409 (618)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTTHHHHTTHHHHSCCSEEEECG
T ss_pred hCCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChHHHHHHHHhhcCCCcEEEEECc
Confidence 357899999999999999999999843388888886432 12678999996
No 500
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=59.51 E-value=5 Score=33.55 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=14.1
Q ss_pred CceEECcCCCchHHHHH
Q 042424 57 HGTLTNPVYNGKTAVAE 73 (138)
Q Consensus 57 ~~~l~aPTGsGKTlva~ 73 (138)
...|.+|+|||||....
T Consensus 140 ~v~IvGpnGsGKSTLlr 156 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSR 156 (460)
T ss_dssp CEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 34599999999998764
Done!