Query 042427
Match_columns 229
No_of_seqs 115 out of 394
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:04:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042427.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042427hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3160 Gamma-interferon induc 100.0 3E-54 6.5E-59 371.7 12.8 178 25-205 37-217 (220)
2 PF03227 GILT: Gamma interfero 100.0 3.3E-38 7.1E-43 245.1 8.3 105 29-136 1-107 (108)
3 cd03023 DsbA_Com1_like DsbA fa 98.5 2.2E-06 4.9E-11 67.7 11.3 137 25-180 3-140 (154)
4 cd03019 DsbA_DsbA DsbA family, 98.2 6.9E-06 1.5E-10 67.0 9.0 135 26-180 14-154 (178)
5 PF13462 Thioredoxin_4: Thiore 98.0 2.3E-05 5E-10 62.8 8.1 146 25-191 10-160 (162)
6 cd03024 DsbA_FrnE DsbA family, 97.2 0.0053 1.2E-07 51.1 11.0 146 31-180 1-186 (201)
7 PRK10954 periplasmic protein d 97.0 0.0046 1E-07 52.7 8.6 134 26-180 36-178 (207)
8 PF13743 Thioredoxin_5: Thiore 96.7 0.0094 2E-07 49.8 8.1 141 33-177 2-155 (176)
9 cd03025 DsbA_FrnE_like DsbA fa 96.3 0.022 4.7E-07 47.0 8.2 146 29-178 1-178 (193)
10 PF01323 DSBA: DSBA-like thior 96.0 0.023 4.9E-07 46.7 6.8 143 30-178 1-176 (193)
11 cd03022 DsbA_HCCA_Iso DsbA fam 94.2 0.085 1.8E-06 43.3 4.9 54 125-180 124-178 (192)
12 COG2761 FrnE Predicted dithiol 89.7 2 4.4E-05 37.7 8.1 168 25-196 2-214 (225)
13 PRK11657 dsbG disulfide isomer 87.6 1.2 2.5E-05 39.4 5.4 43 25-71 115-157 (251)
14 COG1651 DsbG Protein-disulfide 86.6 4.7 0.0001 34.6 8.5 148 26-191 83-239 (244)
15 PF14595 Thioredoxin_9: Thiore 86.0 1.2 2.6E-05 35.5 4.1 44 25-71 39-82 (129)
16 cd02972 DsbA_family DsbA famil 85.7 1.3 2.8E-05 31.2 3.9 41 31-73 1-41 (98)
17 PF07172 GRP: Glycine rich pro 81.6 0.81 1.8E-05 34.8 1.4 21 1-21 1-21 (95)
18 TIGR02189 GlrX-like_plant Glut 81.2 4.9 0.00011 30.2 5.6 50 127-181 24-73 (99)
19 cd02973 TRX_GRX_like Thioredox 79.5 4.3 9.3E-05 27.4 4.4 17 29-45 1-17 (67)
20 KOG2501 Thioredoxin, nucleored 78.3 1.1 2.3E-05 37.3 1.1 60 26-87 32-94 (157)
21 cd03020 DsbA_DsbC_DsbG DsbA fa 78.0 4.3 9.4E-05 33.9 4.8 43 25-73 75-117 (197)
22 TIGR00411 redox_disulf_1 small 76.3 6.1 0.00013 27.4 4.5 26 29-55 1-26 (82)
23 PHA03050 glutaredoxin; Provisi 73.3 9.5 0.00021 29.3 5.3 50 127-181 29-81 (108)
24 KOG1752 Glutaredoxin and relat 70.0 6.4 0.00014 30.4 3.6 43 134-181 37-79 (104)
25 cd03026 AhpF_NTD_C TRX-GRX-lik 67.4 13 0.00029 27.3 4.7 40 26-68 11-50 (89)
26 PF13905 Thioredoxin_8: Thiore 67.1 19 0.00042 25.6 5.6 41 27-69 1-43 (95)
27 cd03027 GRX_DEP Glutaredoxin ( 67.1 11 0.00025 26.0 4.2 47 127-181 17-63 (73)
28 cd03021 DsbA_GSTK DsbA family, 62.3 12 0.00026 31.6 4.1 48 128-177 136-187 (209)
29 PRK10877 protein disulfide iso 61.3 18 0.00039 31.5 5.2 43 25-72 105-147 (232)
30 TIGR02190 GlrX-dom Glutaredoxi 60.2 22 0.00048 25.1 4.7 53 128-190 25-77 (79)
31 PRK11200 grxA glutaredoxin 1; 58.3 10 0.00023 27.1 2.7 15 167-181 56-70 (85)
32 TIGR02190 GlrX-dom Glutaredoxi 56.1 8.6 0.00019 27.3 1.9 21 25-45 4-24 (79)
33 cd02066 GRX_family Glutaredoxi 54.7 9.8 0.00021 25.1 1.9 16 30-45 1-16 (72)
34 TIGR02200 GlrX_actino Glutared 54.3 8.5 0.00018 26.2 1.6 16 30-45 1-16 (77)
35 PF13098 Thioredoxin_2: Thiore 54.0 30 0.00066 25.4 4.7 27 25-52 3-29 (112)
36 COG4665 FcbT2 TRAP-type mannit 51.0 23 0.00049 30.0 3.8 40 12-52 59-98 (182)
37 cd03419 GRX_GRXh_1_2_like Glut 51.0 13 0.00027 25.9 2.1 16 30-45 1-16 (82)
38 PF11287 DUF3088: Protein of u 49.7 8.1 0.00018 30.4 0.9 34 38-74 23-56 (112)
39 PF13728 TraF: F plasmid trans 49.1 16 0.00035 31.5 2.9 39 26-70 119-157 (215)
40 PF00462 Glutaredoxin: Glutare 46.9 15 0.00032 24.4 1.8 15 31-45 1-15 (60)
41 TIGR02180 GRX_euk Glutaredoxin 46.9 13 0.00029 25.8 1.7 15 31-45 1-15 (84)
42 cd03027 GRX_DEP Glutaredoxin ( 46.4 16 0.00034 25.3 2.0 17 30-46 2-18 (73)
43 cd02949 TRX_NTR TRX domain, no 45.9 64 0.0014 23.3 5.3 34 25-60 11-44 (97)
44 cd03418 GRX_GRXb_1_3_like Glut 44.6 14 0.0003 25.3 1.4 13 169-181 51-63 (75)
45 PRK11200 grxA glutaredoxin 1; 42.1 19 0.00041 25.7 1.9 23 30-53 2-24 (85)
46 PRK13728 conjugal transfer pro 41.8 23 0.0005 30.0 2.6 34 31-70 73-106 (181)
47 PHA03050 glutaredoxin; Provisi 41.0 17 0.00036 27.9 1.5 16 30-45 14-29 (108)
48 cd02995 PDI_a_PDI_a'_C PDIa fa 39.9 67 0.0014 22.8 4.6 39 26-66 17-55 (104)
49 COG0695 GrxC Glutaredoxin and 39.5 18 0.0004 26.0 1.4 16 166-181 50-65 (80)
50 PRK13703 conjugal pilus assemb 39.4 23 0.00049 31.5 2.3 38 27-70 143-180 (248)
51 TIGR02196 GlrX_YruB Glutaredox 39.3 17 0.00036 24.1 1.2 15 31-45 2-16 (74)
52 TIGR02181 GRX_bact Glutaredoxi 39.2 17 0.00038 25.3 1.3 15 167-181 47-61 (79)
53 TIGR02189 GlrX-like_plant Glut 38.5 19 0.00041 27.0 1.4 17 30-46 9-25 (99)
54 PHA02291 hypothetical protein 38.5 20 0.00043 28.1 1.5 21 1-21 1-21 (132)
55 PRK12759 bifunctional gluaredo 38.4 49 0.0011 31.3 4.5 55 127-181 18-72 (410)
56 cd03028 GRX_PICOT_like Glutare 38.4 69 0.0015 23.2 4.5 47 127-181 29-75 (90)
57 TIGR02739 TraF type-F conjugat 37.7 25 0.00055 31.4 2.3 38 27-70 150-187 (256)
58 cd02976 NrdH NrdH-redoxin (Nrd 36.9 27 0.00058 23.1 1.9 16 30-45 1-16 (73)
59 cd03029 GRX_hybridPRX5 Glutare 36.7 26 0.00056 24.0 1.8 15 167-181 48-62 (72)
60 cd02965 HyaE HyaE family; HyaE 36.1 72 0.0016 24.8 4.4 21 25-45 25-47 (111)
61 cd03012 TlpA_like_DipZ_like Tl 36.0 85 0.0018 23.8 4.8 40 26-68 22-61 (126)
62 TIGR02183 GRXA Glutaredoxin, G 34.8 25 0.00054 25.4 1.5 14 168-181 56-69 (86)
63 PF00085 Thioredoxin: Thioredo 33.9 70 0.0015 22.5 3.9 33 26-60 16-48 (103)
64 cd01659 TRX_superfamily Thiore 32.1 92 0.002 18.5 3.8 22 31-53 1-22 (69)
65 TIGR01126 pdi_dom protein disu 31.8 95 0.0021 21.8 4.3 21 26-46 12-32 (102)
66 PRK10638 glutaredoxin 3; Provi 31.7 41 0.00088 23.8 2.2 16 30-45 3-18 (83)
67 PRK10824 glutaredoxin-4; Provi 31.6 1.1E+02 0.0023 23.9 4.7 47 127-181 36-82 (115)
68 cd02961 PDI_a_family Protein D 31.5 1.4E+02 0.003 20.5 5.0 29 26-55 14-42 (101)
69 KOG3425 Uncharacterized conser 31.4 70 0.0015 25.7 3.6 35 36-72 42-76 (128)
70 cd03022 DsbA_HCCA_Iso DsbA fam 30.3 86 0.0019 25.2 4.2 35 31-69 1-35 (192)
71 PRK09381 trxA thioredoxin; Pro 30.0 1.5E+02 0.0032 21.6 5.2 33 26-60 20-52 (109)
72 PF13192 Thioredoxin_3: Thiore 28.6 1.7E+02 0.0037 20.3 5.1 35 29-68 1-35 (76)
73 PRK10329 glutaredoxin-like pro 28.3 43 0.00094 24.1 1.9 16 30-45 2-17 (81)
74 PF06692 MNSV_P7B: Melon necro 26.9 76 0.0017 21.9 2.7 30 8-37 17-46 (61)
75 TIGR01295 PedC_BrcD bacterioci 26.9 47 0.001 25.8 2.0 21 26-46 22-42 (122)
76 cd02964 TryX_like_family Trypa 26.9 1.2E+02 0.0027 23.1 4.4 40 26-67 16-56 (132)
77 cd03001 PDI_a_P5 PDIa family, 26.5 1.8E+02 0.0039 20.6 5.0 21 26-46 17-37 (103)
78 TIGR03399 RNA_3prim_cycl RNA 3 26.3 2.9E+02 0.0062 25.5 7.3 47 25-72 108-156 (326)
79 PTZ00051 thioredoxin; Provisio 26.2 1.9E+02 0.0041 20.4 5.1 30 25-55 16-45 (98)
80 TIGR01068 thioredoxin thioredo 26.2 1.5E+02 0.0033 20.6 4.5 29 26-55 13-41 (101)
81 cd02969 PRX_like1 Peroxiredoxi 26.2 1.4E+02 0.003 23.8 4.8 40 26-68 24-63 (171)
82 cd02950 TxlA TRX-like protein 25.6 1.6E+02 0.0036 23.2 5.0 30 25-55 18-47 (142)
83 cd03009 TryX_like_TryX_NRX Try 25.4 1.6E+02 0.0034 22.2 4.7 30 26-56 17-46 (131)
84 PLN03030 cationic peroxidase; 25.2 75 0.0016 29.4 3.2 32 24-56 20-51 (324)
85 cd03002 PDI_a_MPD1_like PDI fa 24.2 1.7E+02 0.0037 21.0 4.6 30 25-55 16-45 (109)
86 TIGR02194 GlrX_NrdH Glutaredox 24.2 42 0.00092 23.0 1.2 11 168-178 47-57 (72)
87 TIGR00365 monothiol glutaredox 23.6 91 0.002 23.1 2.9 47 127-181 33-79 (97)
88 cd02953 DsbDgamma DsbD gamma f 23.0 1.1E+02 0.0024 22.1 3.4 22 26-47 10-31 (104)
89 cd03040 GST_N_mPGES2 GST_N fam 22.0 59 0.0013 22.2 1.6 15 31-45 2-16 (77)
90 COG4545 Glutaredoxin-related p 21.9 65 0.0014 23.8 1.7 16 32-47 5-20 (85)
91 cd02998 PDI_a_ERp38 PDIa famil 21.7 1.7E+02 0.0038 20.5 4.1 22 25-46 16-37 (105)
92 cd02975 PfPDO_like_N Pyrococcu 21.3 2E+02 0.0043 21.7 4.5 18 28-45 22-40 (113)
93 cd02996 PDI_a_ERp44 PDIa famil 20.7 3.2E+02 0.007 19.8 5.5 21 26-46 17-37 (108)
94 TIGR03400 18S_RNA_Rcl1p 18S rR 20.4 4.9E+02 0.011 24.3 7.7 47 25-72 102-153 (360)
95 PF06543 Lac_bphage_repr: Lact 20.3 89 0.0019 20.9 1.9 26 165-190 16-41 (49)
96 TIGR02187 GlrX_arch Glutaredox 20.2 1.9E+02 0.0041 24.3 4.6 21 25-45 131-151 (215)
97 cd03004 PDI_a_ERdj5_C PDIa fam 20.1 3.1E+02 0.0068 19.5 5.3 22 25-46 17-38 (104)
No 1
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-54 Score=371.69 Aligned_cols=178 Identities=42% Similarity=0.852 Sum_probs=163.3
Q ss_pred CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeeceecCC-CceeeeCCchhhccchhhhhhhhhcC
Q 042427 25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPD-GTFVCQHGPGECLLNTIEACTISIYP 103 (229)
Q Consensus 25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~-~~f~CQHG~~EC~gN~~~aCai~~~~ 103 (229)
+.+||+|+||||||||||++||++||.|+|+.++.+++||++||||||+..++ ++|+||||+.||.+|++|||+|++++
T Consensus 37 ~~~~v~ItlyyEaLCPdc~~Fi~~qL~p~~~~~~~~~idl~lvPfGna~~~~~~~~~~CqHG~~EC~lN~LqaCvI~~l~ 116 (220)
T KOG3160|consen 37 QAPKVNITLYYEALCPDCSKFIRNQLYPFFDNLLPSILDLTLVPFGNAQCRNDGGTFTCQHGEEECKLNKLQACVIDTLP 116 (220)
T ss_pred cCCeeEEEEEEEecCccHHHHHHHHHHHHHhhcccceeEEEEEccCCceeecCceEEEecCCHHHHhhhHHHHHHHHhhh
Confidence 56699999999999999999999999999996578999999999999998877 79999999999999999999999999
Q ss_pred CccchhhhhhhhhcchhhhhhHHHHHHHhhcCCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCeechh
Q 042427 104 DVVQHFSFIHCVERLALEKRQAEWINCFELTKLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQE 182 (229)
Q Consensus 104 ~~~~~~~fi~C~~~~~~~~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~~ 182 (229)
+...+++||.||++. ...+.|.+|+++.++++..| +|++|++|.+|+.++|++|..+.|+|.|||||+|||++.++
T Consensus 117 ~~~~~l~~i~C~~~~---~~~~~~~~C~~~~~~~~~~i~~Ca~s~~g~~L~~~~~~~T~~~~p~~~~VPwi~vNg~~~~~ 193 (220)
T KOG3160|consen 117 DQSDQLPFIRCIQGK---QKLSEAEDCLEKYGLNEKKIRECANSRLGAKLLLKYAQETAALAPPHPWVPWILVNGQPLQD 193 (220)
T ss_pred chHhhhceehhhhcc---cchhHHHHHHhhcCCCHHHHHHHhcCchHHHHHHHHHHhhcccCCCCCCcCeEEECCcchHH
Confidence 999999999999982 23456778999999988889 99999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhhcCCC-CCCCCC
Q 042427 183 DFMNFANHVCKAYKGTG-LPEACR 205 (229)
Q Consensus 183 ~~~nl~~~VC~~y~g~~-~P~~C~ 205 (229)
+..||...+|.+|+++. +|..|.
T Consensus 194 ~~~~l~~~~C~~~~~~~~~~~~~~ 217 (220)
T KOG3160|consen 194 AEQDLVTLLCEAYKGKKQKPLKCQ 217 (220)
T ss_pred HHHHHHHHHHHHHhhccccCcccc
Confidence 98899999999999842 455443
No 2
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=100.00 E-value=3.3e-38 Score=245.15 Aligned_cols=105 Identities=38% Similarity=0.797 Sum_probs=92.1
Q ss_pred eEEEEEEEeCChhhHHHHHHhHHHHHH-hcCCCceeEEEEEeeeceecCCCc-eeeeCCchhhccchhhhhhhhhcCCcc
Q 042427 29 VTVSVYYETLCPYCADFIVNHLVKLFQ-KGLNSIVNLRMIPWGNSMMQPDGT-FVCQHGPGECLLNTIEACTISIYPDVV 106 (229)
Q Consensus 29 V~V~vyyESlCPds~~Fi~~qL~p~~~-~~l~~~vdl~lvP~G~a~~~~~~~-f~CQHG~~EC~gN~~~aCai~~~~~~~ 106 (229)
|+|+|||||+||||++||++||.|+|. .++.++|||+|||||||+...+++ |+|||||.||+||++|+|+++++++..
T Consensus 1 V~v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~~~~l~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~~q~C~l~~~~~~~ 80 (108)
T PF03227_consen 1 VNVEVYYESLCPDCRRFITNQLFPVWTYEKLSDIMNLTLVPFGNAKVSSSGNEFTCQHGPDECYGNKLQACALKHLPDTN 80 (108)
T ss_pred CEEEEEEEecCHhHHHHHHHHHHHHHHHhhccceEEEEEEEEeccEEecCCceeecCCcHHHHHcCHHHHhHHHhcCChh
Confidence 789999999999999999999999773 259999999999999999876554 999999999999999999999999988
Q ss_pred chhhhhhhhhcchhhhhhHHHHHHHhhcCC
Q 042427 107 QHFSFIHCVERLALEKRQAEWINCFELTKL 136 (229)
Q Consensus 107 ~~~~fi~C~~~~~~~~~~~~~~~Ca~~~gl 136 (229)
.+|+||+||++... ....+. |+++.+.
T Consensus 81 ~~~~~i~Cm~~~~~--~~~~~~-Ca~~~~~ 107 (108)
T PF03227_consen 81 AALPFIACMESSQD--FPKAIK-CAKKYGI 107 (108)
T ss_pred hhcCEEEEEcCCCC--Cchhhh-hHHhcCC
Confidence 89999999998642 223343 9999875
No 3
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.48 E-value=2.2e-06 Score=67.66 Aligned_cols=137 Identities=11% Similarity=0.123 Sum_probs=86.8
Q ss_pred CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeeceecCCCceeeeCCchhhccchhhhhhhhhcCC
Q 042427 25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPD 104 (229)
Q Consensus 25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~f~CQHG~~EC~gN~~~aCai~~~~~ 104 (229)
.+.++.|.+|+.-.||.|++|. ..|.+.+.+ ..+ +++.++||--.. ... -..-..-.|+.. .+
T Consensus 3 ~~a~~~i~~f~D~~Cp~C~~~~-~~l~~~~~~-~~~-~~~~~~~~p~~~--~~~----------~~~~~~~~~~~~--~~ 65 (154)
T cd03023 3 PNGDVTIVEFFDYNCGYCKKLA-PELEKLLKE-DPD-VRVVFKEFPILG--ESS----------VLAARVALAVWK--NG 65 (154)
T ss_pred CCCCEEEEEEECCCChhHHHhh-HHHHHHHHH-CCC-ceEEEEeCCccC--cch----------HHHHHHHHHHHH--hC
Confidence 3568999999999999999995 466666653 444 667766663211 110 001111112222 13
Q ss_pred ccchhhhhhhhhcchhhhhhHHHHHHHhhcCCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCeec
Q 042427 105 VVQHFSFIHCVERLALEKRQAEWINCFELTKLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPL 180 (229)
Q Consensus 105 ~~~~~~fi~C~~~~~~~~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~ 180 (229)
....++|..=+...............++..|++.+.+ +|.+++...+.+.+..+....+ .+..+||++|||+..
T Consensus 66 ~~~~~~~~~~lf~~~~~~~~~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--gi~gtPt~~v~g~~~ 140 (154)
T cd03023 66 PGKYLEFHNALMATRGRLNEESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARAL--GITGTPAFIIGDTVI 140 (154)
T ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHc--CCCcCCeEEECCEEe
Confidence 3445555433322111111234557789999999999 9999988888888777777765 578999999999865
No 4
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.24 E-value=6.9e-06 Score=67.00 Aligned_cols=135 Identities=17% Similarity=0.091 Sum_probs=88.2
Q ss_pred CCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeeceecCCCceeeeCCchhhccchhhhhhhhhcCCc
Q 042427 26 SENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPDV 105 (229)
Q Consensus 26 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~f~CQHG~~EC~gN~~~aCai~~~~~~ 105 (229)
+.++.|..|+.-.||.|++|- ..+.++..+ ..+.+.++++|+...... +. ...+..+.+.. .
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~~----------~aa~a~~aa~~-~--- 75 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFE-PILEAWVKK-LPKDVKFEKVPVVFGGGE--GE----------PLARAFYAAEA-L--- 75 (178)
T ss_pred CCCcEEEEEECCCCcchhhhh-HHHHHHHHh-CCCCceEEEcCCcccccc--ch----------HHHHHHHHHHH-c---
Confidence 679999999999999999995 567888875 677889999997643211 00 11111111211 1
Q ss_pred cchhhhhhhhhcc----h-hhhhhHHHHHHHhhcCCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCee
Q 042427 106 VQHFSFIHCVERL----A-LEKRQAEWINCFELTKLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQP 179 (229)
Q Consensus 106 ~~~~~fi~C~~~~----~-~~~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~ 179 (229)
...+.|..=+... . .....+.+.+.+++.|++.+.+ .|.++++-++.+.+..+....+ .+..+||++|||+.
T Consensus 76 ~~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gl~~~~~~~~~~s~~~~~~i~~~~~~~~~~--gi~gTPt~iInG~~ 153 (178)
T cd03019 76 GLEDKLHAALFEAIHEKRKRLLDPDDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLAKKY--KITGVPAFVVNGKY 153 (178)
T ss_pred CcHhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHc--CCCCCCeEEECCEE
Confidence 1122322211111 0 0111345778999999999888 9999877667777776766654 57999999999986
Q ss_pred c
Q 042427 180 L 180 (229)
Q Consensus 180 ~ 180 (229)
.
T Consensus 154 ~ 154 (178)
T cd03019 154 V 154 (178)
T ss_pred E
Confidence 4
No 5
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.04 E-value=2.3e-05 Score=62.78 Aligned_cols=146 Identities=14% Similarity=0.145 Sum_probs=89.8
Q ss_pred CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcC--CCceeEEEEEeeeceecCCCceeeeCCchhhccchhhhhhhhhc
Q 042427 25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGL--NSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIY 102 (229)
Q Consensus 25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l--~~~vdl~lvP~G~a~~~~~~~f~CQHG~~EC~gN~~~aCai~~~ 102 (229)
.+.++.|.+|..-.||.|++|.. .+.+++++ + .+.+.+.++|+-... .....+-.+..|+.+.
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~-~~~~~~~~-~i~~~~v~~~~~~~~~~~------------~~~~~a~~~~~~~~~~- 74 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHE-ELEKLLKK-YIDPGKVKFVFRPVPLDK------------HSSLRAAMAAECVADQ- 74 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHH-HHHHHHHH-HTTTTTEEEEEEESSSSH------------HHHHHHHHHHHHHHHH-
T ss_pred CCCCeEEEEEECCCCHhHHHHHH-HHhhhhhh-ccCCCceEEEEEEccccc------------hhHHHHHHHHHHHHHH-
Confidence 56799999999999999999965 45577775 5 578899888872221 1145556666666654
Q ss_pred CCccchhhhhhhhhcchhhhhhHHHHHHHhhcCCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCeech
Q 042427 103 PDVVQHFSFIHCVERLALEKRQAEWINCFELTKLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQ 181 (229)
Q Consensus 103 ~~~~~~~~fi~C~~~~~~~~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~ 181 (229)
+ +.++.+..-+.......... +.=+.+.+.+.+.+ +|+.+..-...+....+.+... .++.+|+++|||+.+.
T Consensus 75 -~-~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~tPt~~inG~~~~ 148 (162)
T PF13462_consen 75 -G-KYFWFFHELLFSQQENFENK--KDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQL--GITGTPTFFINGKYVV 148 (162)
T ss_dssp -T-HHHHHHHHHHHHHCHSTSSH--HHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHH--T-SSSSEEEETTCEEE
T ss_pred -h-HHHHHHHHHHHHhhhccchh--HHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHc--CCccccEEEECCEEeC
Confidence 2 34455554444322111111 11112334445667 9988876666666555555554 5789999999999864
Q ss_pred h--hhhhHHHHH
Q 042427 182 E--DFMNFANHV 191 (229)
Q Consensus 182 ~--~~~nl~~~V 191 (229)
. ..++|...|
T Consensus 149 ~~~~~~~l~~~I 160 (162)
T PF13462_consen 149 GPYTIEELKELI 160 (162)
T ss_dssp TTTSHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 2 355665554
No 6
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=97.20 E-value=0.0053 Score=51.08 Aligned_cols=146 Identities=16% Similarity=0.195 Sum_probs=92.2
Q ss_pred EEEEEEeCChhhHHHHHHhHHHHHHhcCC--CceeEEEEEeeeceec-CCC----ceee-eCCc----------------
Q 042427 31 VSVYYETLCPYCADFIVNHLVKLFQKGLN--SIVNLRMIPWGNSMMQ-PDG----TFVC-QHGP---------------- 86 (229)
Q Consensus 31 V~vyyESlCPds~~Fi~~qL~p~~~~~l~--~~vdl~lvP~G~a~~~-~~~----~f~C-QHG~---------------- 86 (229)
|++|+.-.||.|--.. .+|..+.+. +. +-++|++.||+-.... ..+ .... +||.
T Consensus 1 I~~~~D~~cP~cyl~~-~~l~~~~~~-~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~ 78 (201)
T cd03024 1 IDIWSDVVCPWCYIGK-RRLEKALAE-LGDEVDVEIEWRPFELNPDMPPEGEDRREYLARKYGSTAEQAAAMRRVEAAAA 78 (201)
T ss_pred CeEEecCcCccHHHHH-HHHHHHHHh-CCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 5799999999999774 577777764 53 2589999999644321 111 0000 1110
Q ss_pred ---------hhhccchhhhhhhhhc-CCccchhhhhhhhhcchhh-----hhhHHHHHHHhhcCCCCCcc-ccccCcchh
Q 042427 87 ---------GECLLNTIEACTISIY-PDVVQHFSFIHCVERLALE-----KRQAEWINCFELTKLGRVPI-DCYRNGLGK 150 (229)
Q Consensus 87 ---------~EC~gN~~~aCai~~~-~~~~~~~~fi~C~~~~~~~-----~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~ 150 (229)
..-..|...+|.+-.. .......+|..=+...... +........++..|+|.+.+ ++.+++..+
T Consensus 79 ~~gi~~~~~~~~~~~s~~a~~~~~~a~~~~~~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~ 158 (201)
T cd03024 79 AEGLEFDFDRVRPPNTFDAHRLIHLAKEQGKQDALVEALFRAYFTEGKDIGDRDVLVDLAEEAGLDAAEARAVLASDEYA 158 (201)
T ss_pred HcCCcccCCCCccCCcHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCcccc
Confidence 0111355555543322 1233556666655432111 12334667899999999888 999998888
Q ss_pred HHHHHHHHHhhhcCCCCeeeeEEEECCeec
Q 042427 151 LLEQKYATETAQLKPPHRFVPWVVVNNQPL 180 (229)
Q Consensus 151 ~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~ 180 (229)
+.+.+..+++..+ .+..+||++|||+..
T Consensus 159 ~~~~~~~~~a~~~--gv~G~Pt~vv~g~~~ 186 (201)
T cd03024 159 DEVRADEARARQL--GISGVPFFVFNGKYA 186 (201)
T ss_pred hHHHHHHHHHHHC--CCCcCCEEEECCeEe
Confidence 8888777777654 579999999999753
No 7
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=96.97 E-value=0.0046 Score=52.68 Aligned_cols=134 Identities=14% Similarity=0.114 Sum_probs=78.6
Q ss_pred CCceEEEEEEEeCChhhHHHHHHhH--HHHHHhcCCCceeEEEEEeeeceecCC------CceeeeCCchhhccchhhhh
Q 042427 26 SENVTVSVYYETLCPYCADFIVNHL--VKLFQKGLNSIVNLRMIPWGNSMMQPD------GTFVCQHGPGECLLNTIEAC 97 (229)
Q Consensus 26 ~~kV~V~vyyESlCPds~~Fi~~qL--~p~~~~~l~~~vdl~lvP~G~a~~~~~------~~f~CQHG~~EC~gN~~~aC 97 (229)
..++.|.-|+-=.||.|.+|-. .| .+.|.+.+.+-+.+..+|+--...... ....|...+ ++.+
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~-~l~~~~~~~~~~~~~v~~~~~~~~f~~~~~~~~~~a~~~a~~~~~~-----~k~~-- 107 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEE-VYHVSDNVKKKLPEGTKMTKYHVEFLGPLGKELTQAWAVAMALGVE-----DKVT-- 107 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcc-cccchHHHHHhCCCCCeEEEecccccchhhHHHHHHHHHHHHhCcH-----HHHH--
Confidence 3577899999999999999943 33 366665566666666655421110000 001111100 1110
Q ss_pred hhhhcCCccchhhhhhhhhcchhhhhhHHHHHHHhhcCCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEEC
Q 042427 98 TISIYPDVVQHFSFIHCVERLALEKRQAEWINCFELTKLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVN 176 (229)
Q Consensus 98 ai~~~~~~~~~~~fi~C~~~~~~~~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iN 176 (229)
...++.+ +..... ........-+...|+|.+.+ +|.++..-...+.+..+.+..+ .++-+|+++||
T Consensus 108 --------~~lf~~i--~~~~~~-~~~~~L~~~a~~~Gld~~~f~~~l~s~~~~~~v~~~~~~a~~~--gI~gtPtfiIn 174 (207)
T PRK10954 108 --------PPLFEGV--QKTQTI-QSAADIRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKAAADL--QLRGVPAMFVN 174 (207)
T ss_pred --------HHHHHHH--HccCCC-CCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHc--CCCCCCEEEEC
Confidence 0011111 111111 12234556788899999999 9999877777777666666654 57999999999
Q ss_pred Ceec
Q 042427 177 NQPL 180 (229)
Q Consensus 177 G~~~ 180 (229)
|++.
T Consensus 175 Gky~ 178 (207)
T PRK10954 175 GKYM 178 (207)
T ss_pred CEEE
Confidence 9974
No 8
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=96.68 E-value=0.0094 Score=49.82 Aligned_cols=141 Identities=16% Similarity=0.150 Sum_probs=81.3
Q ss_pred EEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeeceecCCC--ceeeeCCch--hhccchhhhhh---hhhcCCc
Q 042427 33 VYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDG--TFVCQHGPG--ECLLNTIEACT---ISIYPDV 105 (229)
Q Consensus 33 vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~--~f~CQHG~~--EC~gN~~~aCa---i~~~~~~ 105 (229)
+|+.-+|+.|-.+ ...|..+.. .+...+++++||.|+.....+. ...+.+..- +=......+|. ...+...
T Consensus 2 ~F~dPlc~~C~~~-E~~l~kl~~-~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~la~kAA~~qg~ 79 (176)
T PF13743_consen 2 LFVDPLCSWCWGF-EPELRKLKE-EYGNKIEFRFIPGGLMPDINDFMPRMPINGDFWRNEPRSSSYPACLAYKAAQLQGK 79 (176)
T ss_dssp EEE-TT-HHHHHH-HHHHHHHHH-HS-TTEEEEEEE--SS-S--SB--H----TTHHHS--BS--HHHHHHHHHHHTTT-
T ss_pred eeeCCCChHHHHh-HHHHHHHHH-HcCCcEEEEEEEccchHHHHHHHHhcCCCHHHhcCCCCCCchHHHHHHHHHHHhCh
Confidence 4677899999988 334555555 4889999999999998643111 111222211 11234555552 1123356
Q ss_pred cchhhhhhhhhcchhh-----hhhHHHHHHHhhcCCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECC
Q 042427 106 VQHFSFIHCVERLALE-----KRQAEWINCFELTKLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNN 177 (229)
Q Consensus 106 ~~~~~fi~C~~~~~~~-----~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG 177 (229)
++...|+.-+.+.... +..+....+|++.|+|.+.. +=.+|+..++.+.+--+.+..+. ++-.|+++|.+
T Consensus 80 k~~~~fL~~lQ~a~~~~~~~~s~~~~l~~iA~~~gLD~~~F~~d~~S~~~~~~~~~D~~la~~m~--I~~~Ptlvi~~ 155 (176)
T PF13743_consen 80 KKARRFLRALQEALFLEGKNYSDEELLLEIAEELGLDVEMFKEDLHSDEAKQAFQEDQQLAREMG--ITGFPTLVIFN 155 (176)
T ss_dssp H--HHHHHHHHHHHHTS---TTSHHHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTT---SSSSEEEEE-
T ss_pred hhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCHHHHHHHHhChHHHHHHHHHHHHHHHcC--CCCCCEEEEEe
Confidence 7778898888754321 22356779999999999988 55677888888887778888775 69999999865
No 9
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=96.33 E-value=0.022 Score=46.96 Aligned_cols=146 Identities=12% Similarity=0.066 Sum_probs=89.0
Q ss_pred eEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeeceecCC--------------------CceeeeCCchh
Q 042427 29 VTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPD--------------------GTFVCQHGPGE 88 (229)
Q Consensus 29 V~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~--------------------~~f~CQHG~~E 88 (229)
++|.+|+.-+||+|-... .+|..+.+. +...++|++.+++-.....+ .+..-..++.+
T Consensus 1 ~~i~~~~D~~cp~c~~~~-~~l~~l~~~-~~~~~~v~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 78 (193)
T cd03025 1 LELYYFIDPLCGWCYGFE-PLLEKLKEE-YGGGIEVELHLGGLLPGNNARQITKQWRIYVHWHKARIALTGQPFGEDYLE 78 (193)
T ss_pred CeEEEEECCCCchhhCch-HHHHHHHHH-hCCCceEEEEeccccCCCCCCCcchHHHHHHhHHHHHHHhcCCccCchhHh
Confidence 468999999999998774 456666653 54458888887764332110 00111111110
Q ss_pred ---hccchhhhhhhhhc---CCccchhhhhhhhhcchh-----hhhhHHHHHHHhhcCCCCCcc-ccccCcchhHHHHHH
Q 042427 89 ---CLLNTIEACTISIY---PDVVQHFSFIHCVERLAL-----EKRQAEWINCFELTKLGRVPI-DCYRNGLGKLLEQKY 156 (229)
Q Consensus 89 ---C~gN~~~aCai~~~---~~~~~~~~fi~C~~~~~~-----~~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~ 156 (229)
--.|...++..-.. .+......|..-+..... -+..+.....+.+.|+|.+.+ .+.++...++.+.+.
T Consensus 79 ~~~~~~~s~~a~~~~~aa~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~l~~ia~~~Gld~~~~~~~~~s~~~~~~l~~~ 158 (193)
T cd03025 79 LLLFDLDSAPASRAIKAARLQGPERLLEMLKAIQRAHYVEGRDLADTEVLRELAIELGLDVEEFLEDFQSDEAKQAIQED 158 (193)
T ss_pred cccCCCCchHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHcChHHHHHHHHH
Confidence 00123333322111 122355677666644211 122335667899999999888 999998888888888
Q ss_pred HHHhhhcCCCCeeeeEEEECCe
Q 042427 157 ATETAQLKPPHRFVPWVVVNNQ 178 (229)
Q Consensus 157 ~~~T~~l~P~~~~VPwI~iNG~ 178 (229)
.+....+ .+.-+||++|++.
T Consensus 159 ~~~a~~~--gv~g~Ptfvv~~~ 178 (193)
T cd03025 159 QKLAREL--GINGFPTLVLEDD 178 (193)
T ss_pred HHHHHHc--CCCccCEEEEEeC
Confidence 7777765 4699999999764
No 10
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=96.04 E-value=0.023 Score=46.71 Aligned_cols=143 Identities=17% Similarity=0.124 Sum_probs=80.6
Q ss_pred EEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeecee-c-CCC----c--------------------eeee
Q 042427 30 TVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMM-Q-PDG----T--------------------FVCQ 83 (229)
Q Consensus 30 ~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~-~-~~~----~--------------------f~CQ 83 (229)
+|++|+.-.||.|-.+.. .|..+... ..+ ++|++.||.-... . ..+ . +.-.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~-~l~~l~~~-~~~-~~i~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gi~~~ 77 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASP-RLRKLRAE-YPD-VEIEWRPFPLRPDMRRSGGAPPAEDPAKAEYMFQDLERWARRYGIPFN 77 (193)
T ss_dssp EEEEEEBTTBHHHHHHHH-HHHHHHHH-HTT-CEEEEEEESSSTHHHHCT-SCGCGSHHHHHHHHHHHHHHHHHHT--TB
T ss_pred CEEEEEeCCCHHHHHHHH-HHHHHHHH-hcC-CcEEEeccccccccccCCCCCcccChhHHHHHHHHHHHHHHHhcCccc
Confidence 589999999999999864 56666653 434 8999999873321 1 011 1 0000
Q ss_pred CCchhhccchhhhhhhhhc-CCccchhhhhhhh-----hcchhhhhhHHHHHHHhhcCCCCCcc-ccccCcchhHHHHHH
Q 042427 84 HGPGECLLNTIEACTISIY-PDVVQHFSFIHCV-----ERLALEKRQAEWINCFELTKLGRVPI-DCYRNGLGKLLEQKY 156 (229)
Q Consensus 84 HG~~EC~gN~~~aCai~~~-~~~~~~~~fi~C~-----~~~~~~~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~ 156 (229)
..+.. .+|...+..+-.. ........+..=+ .....-+..+.....+++.|+|.+.+ +-..++.++..+.+.
T Consensus 78 ~~~~~-~~~s~~a~~~~~~a~~~~~~~~~~~al~~a~~~~~~~i~~~~vl~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~ 156 (193)
T PF01323_consen 78 FPPPF-PGNSRPAHRAAYAAQEQGKADAFADALFRAYFVEGRDISDPDVLAEIAEEAGLDPDEFDAALDSPEVKAALEED 156 (193)
T ss_dssp TSSTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST-TSSHHHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHH
T ss_pred CCchh-hhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccCCCCHHHHHHHHHHcCCcHHHHHHHhcchHHHHHHHHH
Confidence 00000 0122333322211 1111111221111 11111122344667899999999888 888888888888887
Q ss_pred HHHhhhcCCCCeeeeEEEECCe
Q 042427 157 ATETAQLKPPHRFVPWVVVNNQ 178 (229)
Q Consensus 157 ~~~T~~l~P~~~~VPwI~iNG~ 178 (229)
.++...+ .+..|||++|||+
T Consensus 157 ~~~a~~~--gv~GvP~~vv~g~ 176 (193)
T PF01323_consen 157 TAEARQL--GVFGVPTFVVNGK 176 (193)
T ss_dssp HHHHHHT--TCSSSSEEEETTT
T ss_pred HHHHHHc--CCcccCEEEECCE
Confidence 7777665 5799999999998
No 11
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=94.22 E-value=0.085 Score=43.30 Aligned_cols=54 Identities=15% Similarity=-0.017 Sum_probs=44.9
Q ss_pred HHHHHHHhhcCCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCeec
Q 042427 125 AEWINCFELTKLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPL 180 (229)
Q Consensus 125 ~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~ 180 (229)
+....+++..|+|.+.+ ++.++++.++.+.+..+....+ .+.-||+++|||+..
T Consensus 124 ~~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~--gi~gvPtfvv~g~~~ 178 (192)
T cd03022 124 AVLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIAR--GVFGVPTFVVDGEMF 178 (192)
T ss_pred HHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHc--CCCcCCeEEECCeee
Confidence 34667999999999888 9999988877777777776665 589999999999864
No 12
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.72 E-value=2 Score=37.66 Aligned_cols=168 Identities=15% Similarity=0.166 Sum_probs=97.4
Q ss_pred CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEE--EEeeeceec-CCC-----------ce----eeeCC-
Q 042427 25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRM--IPWGNSMMQ-PDG-----------TF----VCQHG- 85 (229)
Q Consensus 25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~l--vP~G~a~~~-~~~-----------~f----~CQHG- 85 (229)
...+++|+||..=.||.|--. ..-|..+... +.+.+++++ -||--.-.. +.| +. .=.|.
T Consensus 2 ~~~~i~I~v~sD~vCPwC~ig-~~rL~ka~~~-~~~~~~v~i~w~pf~l~p~~~~~g~~~~~~l~~k~g~~~~~~~~~~~ 79 (225)
T COG2761 2 NPMKIEIDVFSDVVCPWCYIG-KRRLEKALAE-YPQEVRVEIRWRPFELDPDLPPEGLDRKEYLAQKYGISEEQKAAHAR 79 (225)
T ss_pred CCceEEEEEEeCCcCchhhcC-HHHHHHHHHh-cCcceeEEEEecccccCCCCCcccccHHHHHHHHhCccHHHHHHHHH
Confidence 356899999999999999765 4456666653 665555544 444321110 100 00 00000
Q ss_pred ----chh-----------hccchhhhhhhhhcC-Ccc-chhhhhhhhhcchhh-----hhhHHHHHHHhhcCCCCCcc-c
Q 042427 86 ----PGE-----------CLLNTIEACTISIYP-DVV-QHFSFIHCVERLALE-----KRQAEWINCFELTKLGRVPI-D 142 (229)
Q Consensus 86 ----~~E-----------C~gN~~~aCai~~~~-~~~-~~~~fi~C~~~~~~~-----~~~~~~~~Ca~~~gl~~~~I-~ 142 (229)
-.| =..|.+.||-+-++. ... .+..|+.=+.+..+. ++.+..-.||..+|||.+.+ .
T Consensus 80 ~~~~~~~~Gi~~~f~~~~~~~nt~~Ah~l~~~A~~~G~~~~~~~~~lf~AyF~eg~nI~D~dVL~diA~~~GLD~~~~~~ 159 (225)
T COG2761 80 LEELAEEEGIDFNFDAIVPAPNTLDAHRLIKAAELQGKAQDRFLEALFEAYFEEGRNIGDEDVLADIAEEVGLDREEFKA 159 (225)
T ss_pred HHHhhHhcCcccchhhccCCCchHHHHHHHHHHHHhCchHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhCCCHHHHHH
Confidence 111 234557777665542 122 477777776554332 23445668999999998877 6
Q ss_pred cccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCeec--h-hhhhhHHHHHHHhhc
Q 042427 143 CYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPL--Q-EDFMNFANHVCKAYK 196 (229)
Q Consensus 143 C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~--~-~~~~nl~~~VC~~y~ 196 (229)
=..|+..++=...-.+.+.. -.++-||+.+|+|++. + ...+-|...+=+...
T Consensus 160 ~L~s~~~~~avr~d~~~A~e--~gI~gVP~fv~d~~~~V~Gaq~~~v~~~al~~~~~ 214 (225)
T COG2761 160 DLASDAAKDAVRQDEAAAQE--MGIRGVPTFVFDGKYAVSGAQPYDVLEDALRQLLA 214 (225)
T ss_pred HHhChHHHHHHHHHHHHHHH--CCCccCceEEEcCcEeecCCCCHHHHHHHHHHHHh
Confidence 66676665555555555554 4689999999977653 1 123345555554443
No 13
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=87.63 E-value=1.2 Score=39.41 Aligned_cols=43 Identities=28% Similarity=0.457 Sum_probs=34.4
Q ss_pred CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeee
Q 042427 25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGN 71 (229)
Q Consensus 25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~ 71 (229)
.+.+..|.||..-.||+|++|-. .+.|..+. ..+.++++|++-
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~-~l~~~~~~---g~V~v~~ip~~~ 157 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQ-QARPWVDS---GKVQLRHILVGI 157 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHH-HHHHHhhc---CceEEEEEeccc
Confidence 56789999999999999999964 57776652 348889998765
No 14
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=86.62 E-value=4.7 Score=34.56 Aligned_cols=148 Identities=18% Similarity=0.181 Sum_probs=78.5
Q ss_pred CCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeeceecCCCceeeeCCchhhccchhhhhhhhhcCCc
Q 042427 26 SENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPDV 105 (229)
Q Consensus 26 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~f~CQHG~~EC~gN~~~aCai~~~~~~ 105 (229)
..+|.|.+|.+-.||.|.+.+. .|...+.. ..+ +++.+++|--...... .|++ +-..-.|+.+.-.
T Consensus 83 ~~~v~v~~f~d~~Cp~C~~~~~-~l~~~~i~-~~~-~~~~~~~~~f~~~~~~---~~~~------a~~~~~~~~~~~~-- 148 (244)
T COG1651 83 YAPVTVVEFFDYTCPYCKEAFP-ELKKKYID-DGK-VRLVLREFPFLDPACP---YCRR------AAQAARCAADQGI-- 148 (244)
T ss_pred CCCceEEEEecCcCccHHHHHH-HHHHHhhh-cCC-CceEEEEeecCCCCcH---HHHH------HHHHHHHhccccc--
Confidence 4499999999999999966543 34333331 222 2444444433321101 1333 3334445554221
Q ss_pred cchhhhhhhhhcchhhhhhHHHHHHHhhc------CCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCe
Q 042427 106 VQHFSFIHCVERLALEKRQAEWINCFELT------KLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQ 178 (229)
Q Consensus 106 ~~~~~fi~C~~~~~~~~~~~~~~~Ca~~~------gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~ 178 (229)
..+|.|..=+.+... .....+..|+... ..+ ... .|........+..+.-+....+ .++..|+++|||+
T Consensus 149 ~~y~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~a~~~--gv~gTPt~~v~~~ 224 (244)
T COG1651 149 VRYWAFHDALFGSQA-EAWAASILCAKDLAKADLAALD-EGKKAKLNQKACDALIAKNYKLAQQL--GVNGTPTFIVNGK 224 (244)
T ss_pred hhHHHHHHHHhhccc-cchhhhhhhhhhhhhhhHHHHH-hhhhhccChHHHHHHHHHHHHHHHhc--CCCcCCeEEECCe
Confidence 357777766655321 1223344454432 121 234 7765444556666666665554 4899999999997
Q ss_pred echh--hhhhHHHHH
Q 042427 179 PLQE--DFMNFANHV 191 (229)
Q Consensus 179 ~~~~--~~~nl~~~V 191 (229)
.+.. ....|...|
T Consensus 225 ~~~g~~~~~~l~~~i 239 (244)
T COG1651 225 LVPGLPDLDELKAII 239 (244)
T ss_pred eecCCCCHHHHHHHH
Confidence 5421 234444443
No 15
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=86.00 E-value=1.2 Score=35.46 Aligned_cols=44 Identities=25% Similarity=0.350 Sum_probs=26.2
Q ss_pred CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeee
Q 042427 25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGN 71 (229)
Q Consensus 25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~ 71 (229)
-..++++.|+.|+-||||++++= .|..+.+ ....++++++.-..
T Consensus 39 ~~~~~~ilvi~e~WCgD~~~~vP-~l~kiae--~~p~i~~~~i~rd~ 82 (129)
T PF14595_consen 39 IQKPYNILVITETWCGDCARNVP-VLAKIAE--ANPNIEVRIILRDE 82 (129)
T ss_dssp --S-EEEEEE--TT-HHHHHHHH-HHHHHHH--H-TTEEEEEE-HHH
T ss_pred cCCCcEEEEEECCCchhHHHHHH-HHHHHHH--hCCCCeEEEEEecC
Confidence 46788999999999999999862 3444443 34468888887543
No 16
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=85.73 E-value=1.3 Score=31.17 Aligned_cols=41 Identities=27% Similarity=0.483 Sum_probs=32.4
Q ss_pred EEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeece
Q 042427 31 VSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSM 73 (229)
Q Consensus 31 V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~ 73 (229)
|.+|+.-.||.|..+. .+|.++.. ...+.++++++|+.-..
T Consensus 1 i~~f~d~~Cp~C~~~~-~~l~~~~~-~~~~~~~~~~~~~~~~~ 41 (98)
T cd02972 1 IVEFFDPLCPYCYLFE-PELEKLLY-ADDGGVRVVYRPFPLLG 41 (98)
T ss_pred CeEEECCCCHhHHhhh-HHHHHHHh-hcCCcEEEEEeccccCC
Confidence 4688999999999995 46777764 35677999999987665
No 17
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=81.57 E-value=0.81 Score=34.82 Aligned_cols=21 Identities=38% Similarity=0.305 Sum_probs=12.9
Q ss_pred CcchhhHhHHHHHHHHHhhcc
Q 042427 1 MASTKLLTFFFPASLLLLSIS 21 (229)
Q Consensus 1 ~~~~~~~~~~~~~~ll~~~~~ 21 (229)
|+|.+++++.++.+.|||+++
T Consensus 1 MaSK~~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISS 21 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHh
Confidence 899887766555443444444
No 18
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=81.17 E-value=4.9 Score=30.22 Aligned_cols=50 Identities=14% Similarity=0.058 Sum_probs=36.5
Q ss_pred HHHHHhhcCCCCCccccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCeech
Q 042427 127 WINCFELTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQ 181 (229)
Q Consensus 127 ~~~Ca~~~gl~~~~I~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~ 181 (229)
.++-+++.|++...++--..+.+.++.....+.|. .+.||.|.|||++++
T Consensus 24 ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg-----~~tvP~Vfi~g~~iG 73 (99)
T TIGR02189 24 VKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGC-----SPAVPAVFVGGKLVG 73 (99)
T ss_pred HHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcC-----CCCcCeEEECCEEEc
Confidence 34456677887765544456778888887776663 468999999999874
No 19
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=79.51 E-value=4.3 Score=27.40 Aligned_cols=17 Identities=41% Similarity=1.071 Sum_probs=15.6
Q ss_pred eEEEEEEEeCChhhHHH
Q 042427 29 VTVSVYYETLCPYCADF 45 (229)
Q Consensus 29 V~V~vyyESlCPds~~F 45 (229)
|+|.+|+-+-||.|++.
T Consensus 1 ~~v~~f~~~~C~~C~~~ 17 (67)
T cd02973 1 VNIEVFVSPTCPYCPDA 17 (67)
T ss_pred CEEEEEECCCCCCcHHH
Confidence 68999999999999876
No 20
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=78.29 E-value=1.1 Score=37.33 Aligned_cols=60 Identities=18% Similarity=0.321 Sum_probs=36.0
Q ss_pred CCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCc-eeEEEEEeeece--ecCCCceeeeCCch
Q 042427 26 SENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSI-VNLRMIPWGNSM--MQPDGTFVCQHGPG 87 (229)
Q Consensus 26 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~-vdl~lvP~G~a~--~~~~~~f~CQHG~~ 87 (229)
..||-+-.|--.-||.||.| +-.|.++|+. +.+- -.|++|-.-.-+ .+-+--+.++||+-
T Consensus 32 ~gKvV~lyFsA~wC~pCR~F-TP~Lk~fYe~-l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W 94 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDF-TPILKDFYEE-LKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDW 94 (157)
T ss_pred CCcEEEEEEEEEECCchhhC-CchHHHHHHH-HHhcCCceEEEEEecCCCHHHHHHHHHhcCCCe
Confidence 34776666667889999999 6788899884 5542 134444322211 11112467888763
No 21
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=77.99 E-value=4.3 Score=33.88 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=32.7
Q ss_pred CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeece
Q 042427 25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSM 73 (229)
Q Consensus 25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~ 73 (229)
.+.++.|.+|..-.||+|++|.. .|.+ ..+-+.|+++||....
T Consensus 75 ~~~~~~i~~f~D~~Cp~C~~~~~-~l~~-----~~~~v~v~~~~~p~~~ 117 (197)
T cd03020 75 GNGKRVVYVFTDPDCPYCRKLEK-ELKP-----NADGVTVRIFPVPILG 117 (197)
T ss_pred CCCCEEEEEEECCCCccHHHHHH-HHhh-----ccCceEEEEEEcCcCC
Confidence 45789999999999999999953 4555 2345788888886543
No 22
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=76.27 E-value=6.1 Score=27.42 Aligned_cols=26 Identities=19% Similarity=0.580 Sum_probs=19.9
Q ss_pred eEEEEEEEeCChhhHHHHHHhHHHHHH
Q 042427 29 VTVSVYYETLCPYCADFIVNHLVKLFQ 55 (229)
Q Consensus 29 V~V~vyyESlCPds~~Fi~~qL~p~~~ 55 (229)
|+|.+|+-+-||.|+... ..|..+..
T Consensus 1 ~~v~~f~~~~C~~C~~~~-~~l~~l~~ 26 (82)
T TIGR00411 1 VKIELFTSPTCPYCPAAK-RVVEEVAK 26 (82)
T ss_pred CEEEEEECCCCcchHHHH-HHHHHHHH
Confidence 789999999999999874 34444444
No 23
>PHA03050 glutaredoxin; Provisional
Probab=73.29 E-value=9.5 Score=29.30 Aligned_cols=50 Identities=12% Similarity=0.103 Sum_probs=32.2
Q ss_pred HHHHHhhcCCC---CCccccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCeech
Q 042427 127 WINCFELTKLG---RVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQ 181 (229)
Q Consensus 127 ~~~Ca~~~gl~---~~~I~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~ 181 (229)
+++.++..|++ ++.++=-....+.++..+..+.|. .+.||.|+|||++++
T Consensus 29 ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG-----~~tVP~IfI~g~~iG 81 (108)
T PHA03050 29 ALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITG-----GRTVPRIFFGKTSIG 81 (108)
T ss_pred HHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcC-----CCCcCEEEECCEEEe
Confidence 44567777773 333333333446667666666664 368999999999874
No 24
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=70.00 E-value=6.4 Score=30.37 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=30.7
Q ss_pred cCCCCCccccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCeech
Q 042427 134 TKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQ 181 (229)
Q Consensus 134 ~gl~~~~I~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~ 181 (229)
.+.....++=-..++|.+++....+.|.+ +.||.|.|||++++
T Consensus 37 ~~v~~~vvELD~~~~g~eiq~~l~~~tg~-----~tvP~vFI~Gk~iG 79 (104)
T KOG1752|consen 37 LGVNPKVVELDEDEDGSEIQKALKKLTGQ-----RTVPNVFIGGKFIG 79 (104)
T ss_pred CCCCCEEEEccCCCCcHHHHHHHHHhcCC-----CCCCEEEECCEEEc
Confidence 44443333333457888998888877754 58999999999985
No 25
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=67.35 E-value=13 Score=27.33 Aligned_cols=40 Identities=23% Similarity=0.433 Sum_probs=26.8
Q ss_pred CCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEE
Q 042427 26 SENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIP 68 (229)
Q Consensus 26 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP 68 (229)
..+|+|.+|+-.-||+|... .++..-+.. ..+.+++..+=
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~--~~~~~~l~~-~~~~i~~~~vd 50 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDV--VQALNLMAV-LNPNIEHEMID 50 (89)
T ss_pred CCCEEEEEEECCCCCCcHHH--HHHHHHHHH-HCCCceEEEEE
Confidence 67899999999999999965 344443332 23345555554
No 26
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=67.13 E-value=19 Score=25.65 Aligned_cols=41 Identities=17% Similarity=0.460 Sum_probs=29.4
Q ss_pred CceEEEEEEEeCChhhHHHHHHhHHHHHHhcCC--CceeEEEEEe
Q 042427 27 ENVTVSVYYETLCPYCADFIVNHLVKLFQKGLN--SIVNLRMIPW 69 (229)
Q Consensus 27 ~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~--~~vdl~lvP~ 69 (229)
.|+.+-.|+-+-||.|++++ ..|..++++ +. +-++|=.|..
T Consensus 1 gK~~ll~fwa~~c~~c~~~~-~~l~~l~~~-~~~~~~v~~v~Vs~ 43 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKEL-PKLKELYKK-YKKKDDVEFVFVSL 43 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHH-HHHHHHHHH-HTTTTTEEEEEEE-
T ss_pred CCEEEEEEECCCCHHHHHHH-HHHHHHHHH-hCCCCCEEEEEEEe
Confidence 36788889999999999996 468888774 55 5566655554
No 27
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=67.11 E-value=11 Score=25.98 Aligned_cols=47 Identities=15% Similarity=0.023 Sum_probs=29.7
Q ss_pred HHHHHhhcCCCCCccccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCeech
Q 042427 127 WINCFELTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQ 181 (229)
Q Consensus 127 ~~~Ca~~~gl~~~~I~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~ 181 (229)
+.+.+++.|+++..++..+... ...+..+.+ + ...||.|.|||++++
T Consensus 17 a~~~L~~~gi~~~~~di~~~~~---~~~el~~~~----g-~~~vP~v~i~~~~iG 63 (73)
T cd03027 17 VRLFLREKGLPYVEINIDIFPE---RKAELEERT----G-SSVVPQIFFNEKLVG 63 (73)
T ss_pred HHHHHHHCCCceEEEECCCCHH---HHHHHHHHh----C-CCCcCEEEECCEEEe
Confidence 4567788899887665554332 222222222 2 367899999999885
No 28
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=62.35 E-value=12 Score=31.59 Aligned_cols=48 Identities=15% Similarity=0.015 Sum_probs=34.5
Q ss_pred HHHHhhcCCCCCcc----ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECC
Q 042427 128 INCFELTKLGRVPI----DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNN 177 (229)
Q Consensus 128 ~~Ca~~~gl~~~~I----~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG 177 (229)
..++...|+|++.. .-+.++.+++.+.+..++..+ -.+.-||+++||+
T Consensus 136 ~~~a~~~Gld~~~~~~~l~~~~~~~~~~~l~~~~~~A~~--~Gv~GVP~fvv~~ 187 (209)
T cd03021 136 SVAADKLGGSAEQAEKLLKAASTPEVKNRLKENTDEALK--YGAFGLPWIVVTN 187 (209)
T ss_pred HHHHHHcCCCcccHHHHHHHccCHHHHHHHHHHHHHHHH--cCCCCCCEEEEEc
Confidence 58899999987654 434566766666666555544 3689999999964
No 29
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=61.32 E-value=18 Score=31.48 Aligned_cols=43 Identities=14% Similarity=0.390 Sum_probs=30.6
Q ss_pred CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeec
Q 042427 25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNS 72 (229)
Q Consensus 25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a 72 (229)
.+.+..|.+|..-.||+|+++-. +|.+..+ .-+.+.+++|...
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~-~l~~~~~----~~v~v~~~~~P~~ 147 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHE-QMKDYNA----LGITVRYLAFPRQ 147 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHH-HHHHHhc----CCeEEEEEeccCC
Confidence 46788999999999999999953 4444322 1267777766654
No 30
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=60.23 E-value=22 Score=25.10 Aligned_cols=53 Identities=13% Similarity=0.047 Sum_probs=30.9
Q ss_pred HHHHhhcCCCCCccccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCeechhhhhhHHHH
Q 042427 128 INCFELTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQEDFMNFANH 190 (229)
Q Consensus 128 ~~Ca~~~gl~~~~I~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~~~~~nl~~~ 190 (229)
++-++..|+++..+..-+..++..+ .+.+ +...||.|.|||+.+.. ..+|.++
T Consensus 25 k~~L~~~gi~y~~idi~~~~~~~~~----~~~~-----g~~~vP~i~i~g~~igG-~~~l~~~ 77 (79)
T TIGR02190 25 KATLKEKGYDFEEIPLGNDARGRSL----RAVT-----GATTVPQVFIGGKLIGG-SDELEAY 77 (79)
T ss_pred HHHHHHcCCCcEEEECCCChHHHHH----HHHH-----CCCCcCeEEECCEEEcC-HHHHHHH
Confidence 3445667888876654443343322 1122 34789999999998753 2344443
No 31
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=58.30 E-value=10 Score=27.08 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=13.0
Q ss_pred CeeeeEEEECCeech
Q 042427 167 HRFVPWVVVNNQPLQ 181 (229)
Q Consensus 167 ~~~VPwI~iNG~~~~ 181 (229)
...||.|+|||+++.
T Consensus 56 ~~~vP~ifi~g~~ig 70 (85)
T PRK11200 56 VETVPQIFVDQKHIG 70 (85)
T ss_pred CCcCCEEEECCEEEc
Confidence 468999999999875
No 32
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=56.07 E-value=8.6 Score=27.28 Aligned_cols=21 Identities=29% Similarity=0.683 Sum_probs=17.4
Q ss_pred CCCceEEEEEEEeCChhhHHH
Q 042427 25 SSENVTVSVYYETLCPYCADF 45 (229)
Q Consensus 25 ~~~kV~V~vyyESlCPds~~F 45 (229)
..++-+|.||.-+.||+|++-
T Consensus 4 ~~~~~~V~ly~~~~Cp~C~~a 24 (79)
T TIGR02190 4 ARKPESVVVFTKPGCPFCAKA 24 (79)
T ss_pred cCCCCCEEEEECCCCHhHHHH
Confidence 345557889999999999987
No 33
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=54.66 E-value=9.8 Score=25.05 Aligned_cols=16 Identities=38% Similarity=0.955 Sum_probs=12.3
Q ss_pred EEEEEEEeCChhhHHH
Q 042427 30 TVSVYYETLCPYCADF 45 (229)
Q Consensus 30 ~V~vyyESlCPds~~F 45 (229)
+|.+|....||+|++.
T Consensus 1 ~v~ly~~~~Cp~C~~~ 16 (72)
T cd02066 1 KVVVFSKSTCPYCKRA 16 (72)
T ss_pred CEEEEECCCCHHHHHH
Confidence 3678888888888866
No 34
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=54.27 E-value=8.5 Score=26.25 Aligned_cols=16 Identities=50% Similarity=1.051 Sum_probs=13.8
Q ss_pred EEEEEEEeCChhhHHH
Q 042427 30 TVSVYYETLCPYCADF 45 (229)
Q Consensus 30 ~V~vyyESlCPds~~F 45 (229)
+|.||+-+.||+|++.
T Consensus 1 ~v~ly~~~~C~~C~~~ 16 (77)
T TIGR02200 1 TITVYGTTWCGYCAQL 16 (77)
T ss_pred CEEEEECCCChhHHHH
Confidence 4789999999999975
No 35
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=53.99 E-value=30 Score=25.38 Aligned_cols=27 Identities=26% Similarity=0.618 Sum_probs=19.4
Q ss_pred CCCceEEEEEEEeCChhhHHHHHHhHHH
Q 042427 25 SSENVTVSVYYETLCPYCADFIVNHLVK 52 (229)
Q Consensus 25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p 52 (229)
..++..|-+|+.--||+|+.+-. ++.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~-~~~~ 29 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEK-ELFP 29 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHH-HHHH
T ss_pred CCCCEEEEEEECCCCHHHHHHHH-HHHH
Confidence 45677888899999999999854 5555
No 36
>COG4665 FcbT2 TRAP-type mannitol/chloroaromatic compound transport system, small permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=51.04 E-value=23 Score=30.00 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=29.5
Q ss_pred HHHHHHhhccCCCCCCceEEEEEEEeCChhhHHHHHHhHHH
Q 042427 12 PASLLLLSISPFGSSENVTVSVYYETLCPYCADFIVNHLVK 52 (229)
Q Consensus 12 ~~~ll~~~~~~~~~~~kV~V~vyyESlCPds~~Fi~~qL~p 52 (229)
.+.|++-...+...++.|.|+++|+++=|-.|.++ +-|.-
T Consensus 59 ~~vFllaaaYtL~~neHVRvDi~Y~~ls~R~qa~v-DllGt 98 (182)
T COG4665 59 GAVFLLAAAYTLKQNEHVRVDIIYGSLSRRTQAWV-DLLGT 98 (182)
T ss_pred HHHHHHHHHHHHhcCCceEEEeeccccCHHHHHHH-HHHHH
Confidence 44444444456678999999999999999999885 34433
No 37
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=51.02 E-value=13 Score=25.87 Aligned_cols=16 Identities=38% Similarity=0.982 Sum_probs=12.7
Q ss_pred EEEEEEEeCChhhHHH
Q 042427 30 TVSVYYETLCPYCADF 45 (229)
Q Consensus 30 ~V~vyyESlCPds~~F 45 (229)
+|.+|+...||+|...
T Consensus 1 ~v~~y~~~~Cp~C~~~ 16 (82)
T cd03419 1 PVVVFSKSYCPYCKRA 16 (82)
T ss_pred CEEEEEcCCCHHHHHH
Confidence 3678888888888876
No 38
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=49.68 E-value=8.1 Score=30.35 Aligned_cols=34 Identities=24% Similarity=0.535 Sum_probs=27.3
Q ss_pred CChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeecee
Q 042427 38 LCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMM 74 (229)
Q Consensus 38 lCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~ 74 (229)
.||+|... +-|.-.+- .+.+.+||+.|+|-+.+.
T Consensus 23 ~Cp~c~~i--EGlLa~~P-~l~~~ldV~rV~f~RPR~ 56 (112)
T PF11287_consen 23 YCPHCAAI--EGLLASFP-DLRERLDVRRVDFPRPRQ 56 (112)
T ss_pred ECCchHHH--HhHHhhCh-hhhhcccEEEeCCCCchH
Confidence 59999966 56666665 488899999999998764
No 39
>PF13728 TraF: F plasmid transfer operon protein
Probab=49.12 E-value=16 Score=31.46 Aligned_cols=39 Identities=21% Similarity=0.578 Sum_probs=28.1
Q ss_pred CCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEee
Q 042427 26 SENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWG 70 (229)
Q Consensus 26 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G 70 (229)
.++.-+-++|+|-||+|+.|. |++.. +.+.-.|+++|+-
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~-----pil~~-~~~~yg~~v~~vs 157 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQA-----PILQQ-FADKYGFSVIPVS 157 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHH-----HHHHH-HHHHhCCEEEEEe
Confidence 467889999999999999873 55542 4444566776654
No 40
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=46.91 E-value=15 Score=24.37 Aligned_cols=15 Identities=47% Similarity=0.995 Sum_probs=9.0
Q ss_pred EEEEEEeCChhhHHH
Q 042427 31 VSVYYETLCPYCADF 45 (229)
Q Consensus 31 V~vyyESlCPds~~F 45 (229)
|.+|...-||+|++.
T Consensus 1 V~vy~~~~C~~C~~~ 15 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKA 15 (60)
T ss_dssp EEEEESTTSHHHHHH
T ss_pred cEEEEcCCCcCHHHH
Confidence 455666666666655
No 41
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=46.86 E-value=13 Score=25.76 Aligned_cols=15 Identities=40% Similarity=1.063 Sum_probs=11.0
Q ss_pred EEEEEEeCChhhHHH
Q 042427 31 VSVYYETLCPYCADF 45 (229)
Q Consensus 31 V~vyyESlCPds~~F 45 (229)
|.+|+.+.||+|++.
T Consensus 1 V~~f~~~~Cp~C~~~ 15 (84)
T TIGR02180 1 VVVFSKSYCPYCKKA 15 (84)
T ss_pred CEEEECCCChhHHHH
Confidence 467777778887766
No 42
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=46.44 E-value=16 Score=25.27 Aligned_cols=17 Identities=24% Similarity=0.512 Sum_probs=15.0
Q ss_pred EEEEEEEeCChhhHHHH
Q 042427 30 TVSVYYETLCPYCADFI 46 (229)
Q Consensus 30 ~V~vyyESlCPds~~Fi 46 (229)
+|.||.-+.||+|++-.
T Consensus 2 ~v~ly~~~~C~~C~ka~ 18 (73)
T cd03027 2 RVTIYSRLGCEDCTAVR 18 (73)
T ss_pred EEEEEecCCChhHHHHH
Confidence 58899999999999874
No 43
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=45.94 E-value=64 Score=23.28 Aligned_cols=34 Identities=18% Similarity=0.424 Sum_probs=25.8
Q ss_pred CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCC
Q 042427 25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNS 60 (229)
Q Consensus 25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~ 60 (229)
.++++-+-+|+.+-||.|+.+. ..|.++.++ +.+
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~-~~l~~l~~~-~~~ 44 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLK-PILNKVIDE-FDG 44 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHH-HHHHHHHHH-hCC
Confidence 5778889999999999999985 345565553 554
No 44
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=44.64 E-value=14 Score=25.32 Aligned_cols=13 Identities=15% Similarity=0.365 Sum_probs=10.1
Q ss_pred eeeEEEECCeech
Q 042427 169 FVPWVVVNNQPLQ 181 (229)
Q Consensus 169 ~VPwI~iNG~~~~ 181 (229)
.||.|+|||+.+.
T Consensus 51 ~vP~v~i~g~~ig 63 (75)
T cd03418 51 TVPQIFIGDVHIG 63 (75)
T ss_pred ccCEEEECCEEEe
Confidence 6888888887764
No 45
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=42.06 E-value=19 Score=25.69 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=17.8
Q ss_pred EEEEEEEeCChhhHHHHHHhHHHH
Q 042427 30 TVSVYYETLCPYCADFIVNHLVKL 53 (229)
Q Consensus 30 ~V~vyyESlCPds~~Fi~~qL~p~ 53 (229)
+|.+|+-+-||.|.+.. +.|..+
T Consensus 2 ~v~iy~~~~C~~C~~a~-~~L~~l 24 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAK-ELAEKL 24 (85)
T ss_pred EEEEEeCCCChhHHHHH-HHHHhh
Confidence 68999999999999873 344443
No 46
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=41.84 E-value=23 Score=30.00 Aligned_cols=34 Identities=29% Similarity=0.703 Sum_probs=24.1
Q ss_pred EEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEee
Q 042427 31 VSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWG 70 (229)
Q Consensus 31 V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G 70 (229)
|-+|+.|-||.|+.++ -.|..++++ . .+.++++.
T Consensus 73 lV~FwaswCp~C~~e~-P~L~~l~~~-~----g~~Vi~Vs 106 (181)
T PRK13728 73 VVLFMQGHCPYCHQFD-PVLKQLAQQ-Y----GFSVFPYT 106 (181)
T ss_pred EEEEECCCCHhHHHHH-HHHHHHHHH-c----CCEEEEEE
Confidence 6689999999999996 345555553 3 46666654
No 47
>PHA03050 glutaredoxin; Provisional
Probab=40.96 E-value=17 Score=27.93 Aligned_cols=16 Identities=25% Similarity=0.932 Sum_probs=14.6
Q ss_pred EEEEEEEeCChhhHHH
Q 042427 30 TVSVYYETLCPYCADF 45 (229)
Q Consensus 30 ~V~vyyESlCPds~~F 45 (229)
+|.||.-+-||+|.+-
T Consensus 14 ~V~vys~~~CPyC~~a 29 (108)
T PHA03050 14 KVTIFVKFTCPFCRNA 29 (108)
T ss_pred CEEEEECCCChHHHHH
Confidence 5889999999999976
No 48
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=39.94 E-value=67 Score=22.83 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=24.8
Q ss_pred CCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEE
Q 042427 26 SENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRM 66 (229)
Q Consensus 26 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~l 66 (229)
..+.-+-.||-+-|+.|+.+. .++..+.+. +.+..++.+
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~-~~~~~~~~~-~~~~~~~~~ 55 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALA-PIYEELAEK-LKGDDNVVI 55 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHh-hHHHHHHHH-hcCCCCEEE
Confidence 346677788999999999884 345555442 444333333
No 49
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=39.45 E-value=18 Score=26.03 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=12.3
Q ss_pred CCeeeeEEEECCeech
Q 042427 166 PHRFVPWVVVNNQPLQ 181 (229)
Q Consensus 166 ~~~~VPwI~iNG~~~~ 181 (229)
+.+.||.|+|||++..
T Consensus 50 g~~tvP~I~i~~~~ig 65 (80)
T COG0695 50 GQRTVPQIFIGGKHVG 65 (80)
T ss_pred CCCCcCEEEECCEEEe
Confidence 3578889999888763
No 50
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=39.44 E-value=23 Score=31.51 Aligned_cols=38 Identities=16% Similarity=0.340 Sum_probs=26.9
Q ss_pred CceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEee
Q 042427 27 ENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWG 70 (229)
Q Consensus 27 ~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G 70 (229)
++--+=+||+|-||+|..|. |++.. +.+.-.|.++|+-
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~a-----Pil~~-fa~~yg~~v~~VS 180 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLA-----QVIND-FRDTYGLSVIPVS 180 (248)
T ss_pred hcceEEEEECCCCchhHHHH-----HHHHH-HHHHhCCeEEEEe
Confidence 34678899999999999773 55553 5555566777754
No 51
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=39.32 E-value=17 Score=24.10 Aligned_cols=15 Identities=40% Similarity=0.831 Sum_probs=12.5
Q ss_pred EEEEEEeCChhhHHH
Q 042427 31 VSVYYETLCPYCADF 45 (229)
Q Consensus 31 V~vyyESlCPds~~F 45 (229)
|.+|+-+-||.|++.
T Consensus 2 i~lf~~~~C~~C~~~ 16 (74)
T TIGR02196 2 VKVYTTPWCPPCKKA 16 (74)
T ss_pred EEEEcCCCChhHHHH
Confidence 678888999999864
No 52
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=39.22 E-value=17 Score=25.29 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=12.1
Q ss_pred CeeeeEEEECCeech
Q 042427 167 HRFVPWVVVNNQPLQ 181 (229)
Q Consensus 167 ~~~VPwI~iNG~~~~ 181 (229)
...||.|+|||+.+.
T Consensus 47 ~~~vP~i~i~g~~ig 61 (79)
T TIGR02181 47 RRTVPQIFIGDVHVG 61 (79)
T ss_pred CCCcCEEEECCEEEc
Confidence 468899999998764
No 53
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=38.54 E-value=19 Score=27.00 Aligned_cols=17 Identities=18% Similarity=0.454 Sum_probs=15.1
Q ss_pred EEEEEEEeCChhhHHHH
Q 042427 30 TVSVYYETLCPYCADFI 46 (229)
Q Consensus 30 ~V~vyyESlCPds~~Fi 46 (229)
+|.||.-+.||+|.+.-
T Consensus 9 ~Vvvysk~~Cp~C~~ak 25 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVK 25 (99)
T ss_pred CEEEEECCCCHHHHHHH
Confidence 58899999999999873
No 54
>PHA02291 hypothetical protein
Probab=38.45 E-value=20 Score=28.13 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=18.3
Q ss_pred CcchhhHhHHHHHHHHHhhcc
Q 042427 1 MASTKLLTFFFPASLLLLSIS 21 (229)
Q Consensus 1 ~~~~~~~~~~~~~~ll~~~~~ 21 (229)
|+|.+.+|-+++++.|+++++
T Consensus 1 MS~K~~iFYiL~~~VL~~si~ 21 (132)
T PHA02291 1 MSRKASIFYILVVIVLAFSIS 21 (132)
T ss_pred CCcchhhHHHHHHHHHHHHHH
Confidence 899999999999888888776
No 55
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=38.41 E-value=49 Score=31.32 Aligned_cols=55 Identities=11% Similarity=0.035 Sum_probs=34.4
Q ss_pred HHHHHhhcCCCCCccccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCeech
Q 042427 127 WINCFELTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQ 181 (229)
Q Consensus 127 ~~~Ca~~~gl~~~~I~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~ 181 (229)
+++.++..|++...|.--+...+.+++.+..+.--...-+.+.||.|.|||++++
T Consensus 18 aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~ig 72 (410)
T PRK12759 18 AKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIG 72 (410)
T ss_pred HHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEe
Confidence 5577888899888763335555555555543220011124578999999999874
No 56
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=38.39 E-value=69 Score=23.23 Aligned_cols=47 Identities=11% Similarity=0.069 Sum_probs=29.6
Q ss_pred HHHHHhhcCCCCCccccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCeech
Q 042427 127 WINCFELTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQ 181 (229)
Q Consensus 127 ~~~Ca~~~gl~~~~I~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~ 181 (229)
+++-++..|++...++-.. ..++.....+.|. .+.||.|.|||+++.
T Consensus 29 ak~~L~~~~i~y~~idv~~---~~~~~~~l~~~~g-----~~tvP~vfi~g~~iG 75 (90)
T cd03028 29 VVQILNQLGVDFGTFDILE---DEEVRQGLKEYSN-----WPTFPQLYVNGELVG 75 (90)
T ss_pred HHHHHHHcCCCeEEEEcCC---CHHHHHHHHHHhC-----CCCCCEEEECCEEEe
Confidence 4456777788776653222 1344444444443 367999999999874
No 57
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=37.72 E-value=25 Score=31.36 Aligned_cols=38 Identities=13% Similarity=0.309 Sum_probs=27.1
Q ss_pred CceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEee
Q 042427 27 ENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWG 70 (229)
Q Consensus 27 ~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G 70 (229)
++--+=++|+|.||+|+.|. |++.. +.+.-.|.++|+-
T Consensus 150 ~~~gL~fFy~~~C~~C~~~a-----pil~~-fa~~ygi~v~~VS 187 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMA-----PVIQA-FAKEYGISVIPIS 187 (256)
T ss_pred hceeEEEEECCCCchhHHHH-----HHHHH-HHHHhCCeEEEEe
Confidence 45778899999999999774 55542 5445566777764
No 58
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=36.93 E-value=27 Score=23.05 Aligned_cols=16 Identities=44% Similarity=0.976 Sum_probs=12.8
Q ss_pred EEEEEEEeCChhhHHH
Q 042427 30 TVSVYYETLCPYCADF 45 (229)
Q Consensus 30 ~V~vyyESlCPds~~F 45 (229)
+|.+|+.+-||+|++.
T Consensus 1 ~v~l~~~~~c~~c~~~ 16 (73)
T cd02976 1 EVTVYTKPDCPYCKAT 16 (73)
T ss_pred CEEEEeCCCChhHHHH
Confidence 3678888889999874
No 59
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=36.74 E-value=26 Score=23.99 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=10.3
Q ss_pred CeeeeEEEECCeech
Q 042427 167 HRFVPWVVVNNQPLQ 181 (229)
Q Consensus 167 ~~~VPwI~iNG~~~~ 181 (229)
...||.|.|||+.+.
T Consensus 48 ~~~vP~ifi~g~~ig 62 (72)
T cd03029 48 AMTVPQVFIDGELIG 62 (72)
T ss_pred CCCcCeEEECCEEEe
Confidence 356777777777664
No 60
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=36.08 E-value=72 Score=24.80 Aligned_cols=21 Identities=14% Similarity=0.053 Sum_probs=14.3
Q ss_pred CCCceEEEEEEEe--CChhhHHH
Q 042427 25 SSENVTVSVYYET--LCPYCADF 45 (229)
Q Consensus 25 ~~~kV~V~vyyES--lCPds~~F 45 (229)
..+.+.|-.||.. .||+|+.+
T Consensus 25 ~~~~~~v~~f~~~~~~cp~c~~i 47 (111)
T cd02965 25 AAGGDLVLLLAGDPVRFPEVLDV 47 (111)
T ss_pred hCCCCEEEEecCCcccCcchhhh
Confidence 3444556666666 79999976
No 61
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=35.99 E-value=85 Score=23.77 Aligned_cols=40 Identities=23% Similarity=0.300 Sum_probs=28.8
Q ss_pred CCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEE
Q 042427 26 SENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIP 68 (229)
Q Consensus 26 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP 68 (229)
..|+-|-.|+-+-||.|++.+- .|..++++ +.+ -++.++.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p-~l~~l~~~-~~~-~~~~vi~ 61 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLP-YLTDLEQK-YKD-DGLVVIG 61 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHH-HHHHHHHH-cCc-CCeEEEE
Confidence 4578888889999999998864 57777774 654 2455543
No 62
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=34.75 E-value=25 Score=25.40 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=11.3
Q ss_pred eeeeEEEECCeech
Q 042427 168 RFVPWVVVNNQPLQ 181 (229)
Q Consensus 168 ~~VPwI~iNG~~~~ 181 (229)
..||.|.|||++++
T Consensus 56 ~tVP~ifi~g~~ig 69 (86)
T TIGR02183 56 ETVPQIFVDEKHVG 69 (86)
T ss_pred CCcCeEEECCEEec
Confidence 57888888888874
No 63
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=33.91 E-value=70 Score=22.55 Aligned_cols=33 Identities=30% Similarity=0.577 Sum_probs=22.6
Q ss_pred CCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCC
Q 042427 26 SENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNS 60 (229)
Q Consensus 26 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~ 60 (229)
.++.-|-.||...||.|+++. ..|..+.+. +.+
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~-~~~~~~~~~-~~~ 48 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFK-PILEKLAKE-YKD 48 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHH-HHHHHHHHH-TTT
T ss_pred cCCCEEEEEeCCCCCcccccc-ceecccccc-ccc
Confidence 356677778889999999984 345555543 444
No 64
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=32.13 E-value=92 Score=18.47 Aligned_cols=22 Identities=27% Similarity=0.836 Sum_probs=15.9
Q ss_pred EEEEEEeCChhhHHHHHHhHHHH
Q 042427 31 VSVYYETLCPYCADFIVNHLVKL 53 (229)
Q Consensus 31 V~vyyESlCPds~~Fi~~qL~p~ 53 (229)
|.+|+.+-||+|++... ++...
T Consensus 1 l~~~~~~~c~~c~~~~~-~~~~~ 22 (69)
T cd01659 1 LVLFYAPWCPFCQALRP-VLAEL 22 (69)
T ss_pred CEEEECCCChhHHhhhh-HHHHH
Confidence 35789999999998843 44443
No 65
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=31.78 E-value=95 Score=21.84 Aligned_cols=21 Identities=19% Similarity=0.547 Sum_probs=18.9
Q ss_pred CCceEEEEEEEeCChhhHHHH
Q 042427 26 SENVTVSVYYETLCPYCADFI 46 (229)
Q Consensus 26 ~~kV~V~vyyESlCPds~~Fi 46 (229)
.+++.+-.||.+-||.|+.+.
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~ 32 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLA 32 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhC
Confidence 578889999999999999984
No 66
>PRK10638 glutaredoxin 3; Provisional
Probab=31.69 E-value=41 Score=23.84 Aligned_cols=16 Identities=31% Similarity=0.955 Sum_probs=9.7
Q ss_pred EEEEEEEeCChhhHHH
Q 042427 30 TVSVYYETLCPYCADF 45 (229)
Q Consensus 30 ~V~vyyESlCPds~~F 45 (229)
+|.+|..+-||+|++.
T Consensus 3 ~v~ly~~~~Cp~C~~a 18 (83)
T PRK10638 3 NVEIYTKATCPFCHRA 18 (83)
T ss_pred cEEEEECCCChhHHHH
Confidence 3556666666666654
No 67
>PRK10824 glutaredoxin-4; Provisional
Probab=31.65 E-value=1.1e+02 Score=23.95 Aligned_cols=47 Identities=6% Similarity=0.022 Sum_probs=28.6
Q ss_pred HHHHHhhcCCCCCccccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCeech
Q 042427 127 WINCFELTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQ 181 (229)
Q Consensus 127 ~~~Ca~~~gl~~~~I~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~ 181 (229)
+..-++..|+++..+.=.. ..++.....+.|. ...||-|.|||++++
T Consensus 36 ak~lL~~~~i~~~~idi~~---d~~~~~~l~~~sg-----~~TVPQIFI~G~~IG 82 (115)
T PRK10824 36 AVQALSACGERFAYVDILQ---NPDIRAELPKYAN-----WPTFPQLWVDGELVG 82 (115)
T ss_pred HHHHHHHcCCCceEEEecC---CHHHHHHHHHHhC-----CCCCCeEEECCEEEc
Confidence 3445666677766551111 1245555555553 369999999999974
No 68
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=31.48 E-value=1.4e+02 Score=20.50 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=20.7
Q ss_pred CCceEEEEEEEeCChhhHHHHHHhHHHHHH
Q 042427 26 SENVTVSVYYETLCPYCADFIVNHLVKLFQ 55 (229)
Q Consensus 26 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~~ 55 (229)
+++..|-.||.+-||.|+.+.. .+..+.+
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~-~~~~~~~ 42 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAP-EYEKLAK 42 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhH-HHHHHHH
Confidence 3447788888899999999843 4544444
No 69
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.44 E-value=70 Score=25.66 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=21.4
Q ss_pred EeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeec
Q 042427 36 ETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNS 72 (229)
Q Consensus 36 ESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a 72 (229)
+|-||||++.- -.+..+++ ....-+.|-.|.-|+-
T Consensus 42 qSWCPdCV~AE-Pvi~~alk-~ap~~~~~v~v~VG~r 76 (128)
T KOG3425|consen 42 QSWCPDCVAAE-PVINEALK-HAPEDVHFVHVYVGNR 76 (128)
T ss_pred CcCCchHHHhh-HHHHHHHH-hCCCceEEEEEEecCC
Confidence 45599999873 23344554 2556566666666653
No 70
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=30.31 E-value=86 Score=25.23 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=25.2
Q ss_pred EEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEe
Q 042427 31 VSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPW 69 (229)
Q Consensus 31 V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~ 69 (229)
|++|+.-.||.|--.. ..|..+... +. ++|++.||
T Consensus 1 i~~~~D~~cP~cy~~~-~~l~~~~~~-~~--~~i~~~p~ 35 (192)
T cd03022 1 IDFYFDFSSPYSYLAH-ERLPALAAR-HG--ATVRYRPI 35 (192)
T ss_pred CeEEEeCCChHHHHHH-HHHHHHHHH-hC--CeeEEeee
Confidence 5799999999998764 355555442 32 67888888
No 71
>PRK09381 trxA thioredoxin; Provisional
Probab=30.04 E-value=1.5e+02 Score=21.58 Aligned_cols=33 Identities=9% Similarity=0.284 Sum_probs=22.1
Q ss_pred CCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCC
Q 042427 26 SENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNS 60 (229)
Q Consensus 26 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~ 60 (229)
.++.-|-.+|-+-||.|+.+. ..|..+.++ +.+
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~-p~~~~l~~~-~~~ 52 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIA-PILDEIADE-YQG 52 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHh-HHHHHHHHH-hCC
Confidence 355667788889999999885 244444443 444
No 72
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=28.63 E-value=1.7e+02 Score=20.30 Aligned_cols=35 Identities=23% Similarity=0.704 Sum_probs=19.0
Q ss_pred eEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEE
Q 042427 29 VTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIP 68 (229)
Q Consensus 29 V~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP 68 (229)
++|.+ +-+-||.|.... .-+..+..+ . + ++++.+-
T Consensus 1 m~I~v-~~~~C~~C~~~~-~~~~~~~~~-~-~-i~~ei~~ 35 (76)
T PF13192_consen 1 MKIKV-FSPGCPYCPELV-QLLKEAAEE-L-G-IEVEIID 35 (76)
T ss_dssp EEEEE-ECSSCTTHHHHH-HHHHHHHHH-T-T-EEEEEEE
T ss_pred CEEEE-eCCCCCCcHHHH-HHHHHHHHh-c-C-CeEEEEE
Confidence 46777 555688888553 233344443 3 3 5555544
No 73
>PRK10329 glutaredoxin-like protein; Provisional
Probab=28.28 E-value=43 Score=24.05 Aligned_cols=16 Identities=19% Similarity=0.553 Sum_probs=12.4
Q ss_pred EEEEEEEeCChhhHHH
Q 042427 30 TVSVYYETLCPYCADF 45 (229)
Q Consensus 30 ~V~vyyESlCPds~~F 45 (229)
+|+||.-+-||+|.+-
T Consensus 2 ~v~lYt~~~Cp~C~~a 17 (81)
T PRK10329 2 RITIYTRNDCVQCHAT 17 (81)
T ss_pred EEEEEeCCCCHhHHHH
Confidence 5778888888888864
No 74
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=26.93 E-value=76 Score=21.93 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhhccCCCCCCceEEEEEEEe
Q 042427 8 TFFFPASLLLLSISPFGSSENVTVSVYYET 37 (229)
Q Consensus 8 ~~~~~~~ll~~~~~~~~~~~kV~V~vyyES 37 (229)
++++..+|+++++..++..+++.+.=|-+|
T Consensus 17 lLiliis~~f~lI~~l~qq~~~y~HH~d~S 46 (61)
T PF06692_consen 17 LLILIISFVFFLITSLGQQGNTYVHHFDNS 46 (61)
T ss_pred HHHHHHHHHHHHHhhhccCCCeeEEeecCc
Confidence 445677778888888877777777666554
No 75
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=26.91 E-value=47 Score=25.78 Aligned_cols=21 Identities=24% Similarity=0.605 Sum_probs=16.6
Q ss_pred CCceEEEEEEEeCChhhHHHH
Q 042427 26 SENVTVSVYYETLCPYCADFI 46 (229)
Q Consensus 26 ~~kV~V~vyyESlCPds~~Fi 46 (229)
..+.-|-.|+-+-||+|+.|-
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~ 42 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFS 42 (122)
T ss_pred cCCcEEEEEECCCChhHHHHh
Confidence 345567788999999999883
No 76
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=26.91 E-value=1.2e+02 Score=23.09 Aligned_cols=40 Identities=23% Similarity=0.522 Sum_probs=26.7
Q ss_pred CCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCc-eeEEEE
Q 042427 26 SENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSI-VNLRMI 67 (229)
Q Consensus 26 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~-vdl~lv 67 (229)
..|+-|-.|+-+-||.|+..+. .|..++++ +.+. -+++++
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p-~l~~l~~~-~~~~~~~v~vi 56 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTP-KLVEFYEK-LKEEGKNFEIV 56 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHH-HHHHHHHH-HhhcCCCeEEE
Confidence 4588888888999999999864 46666653 4332 234444
No 77
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=26.50 E-value=1.8e+02 Score=20.57 Aligned_cols=21 Identities=24% Similarity=0.642 Sum_probs=16.1
Q ss_pred CCceEEEEEEEeCChhhHHHH
Q 042427 26 SENVTVSVYYETLCPYCADFI 46 (229)
Q Consensus 26 ~~kV~V~vyyESlCPds~~Fi 46 (229)
.++.-+-.+|-.-|+.|+.|.
T Consensus 17 ~~~~vlv~f~a~~C~~C~~~~ 37 (103)
T cd03001 17 SDDVWLVEFYAPWCGHCKNLA 37 (103)
T ss_pred CCCcEEEEEECCCCHHHHHHh
Confidence 345566677788999999984
No 78
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=26.26 E-value=2.9e+02 Score=25.47 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=38.8
Q ss_pred CCCceEEEEEEEeCChh--hHHHHHHhHHHHHHhcCCCceeEEEEEeeec
Q 042427 25 SSENVTVSVYYETLCPY--CADFIVNHLVKLFQKGLNSIVNLRMIPWGNS 72 (229)
Q Consensus 25 ~~~kV~V~vyyESlCPd--s~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a 72 (229)
.+.++.|++-.-+.-|- +.+|+.+.+.|++++ +.-.+++++.=.|..
T Consensus 108 ~~~p~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~-~G~~~~l~v~rRG~y 156 (326)
T TIGR03399 108 ANGPSRVTVSGGTDVPWAPPVDYLRNVFLPLLER-MGIRAELELLRRGFY 156 (326)
T ss_pred CCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHh-CCCcEEEEEEeCCcC
Confidence 46788999999988887 899999999999986 655588888766654
No 79
>PTZ00051 thioredoxin; Provisional
Probab=26.19 E-value=1.9e+02 Score=20.39 Aligned_cols=30 Identities=13% Similarity=0.341 Sum_probs=21.7
Q ss_pred CCCceEEEEEEEeCChhhHHHHHHhHHHHHH
Q 042427 25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQ 55 (229)
Q Consensus 25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~ 55 (229)
..++.-|-.||-+-||.|+.+. ..|..+.+
T Consensus 16 ~~~~~vli~f~~~~C~~C~~~~-~~l~~l~~ 45 (98)
T PTZ00051 16 SQNELVIVDFYAEWCGPCKRIA-PFYEECSK 45 (98)
T ss_pred hcCCeEEEEEECCCCHHHHHHh-HHHHHHHH
Confidence 3456778888999999999985 34444444
No 80
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=26.19 E-value=1.5e+02 Score=20.55 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=20.3
Q ss_pred CCceEEEEEEEeCChhhHHHHHHhHHHHHH
Q 042427 26 SENVTVSVYYETLCPYCADFIVNHLVKLFQ 55 (229)
Q Consensus 26 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~~ 55 (229)
.++.-|-.+|..-||.|+.+.. .|..+.+
T Consensus 13 ~~~~vvi~f~~~~C~~C~~~~~-~l~~~~~ 41 (101)
T TIGR01068 13 SDKPVLVDFWAPWCGPCKMIAP-ILEELAK 41 (101)
T ss_pred cCCcEEEEEECCCCHHHHHhCH-HHHHHHH
Confidence 3556777888999999998853 4444443
No 81
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=26.15 E-value=1.4e+02 Score=23.85 Aligned_cols=40 Identities=15% Similarity=0.384 Sum_probs=27.9
Q ss_pred CCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEE
Q 042427 26 SENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIP 68 (229)
Q Consensus 26 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP 68 (229)
.+++.|-.|+-+-||.|++-+ ..|..+.++ +.+ -++++|-
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~-~~l~~l~~~-~~~-~~v~~v~ 63 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIE-DRLNRLAKE-YGA-KGVAVVA 63 (171)
T ss_pred CCCEEEEEEECCCCccHHHHH-HHHHHHHHH-Hhh-CCeEEEE
Confidence 567888889999999998775 467776663 543 2455443
No 82
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=25.57 E-value=1.6e+02 Score=23.18 Aligned_cols=30 Identities=27% Similarity=0.526 Sum_probs=21.0
Q ss_pred CCCceEEEEEEEeCChhhHHHHHHhHHHHHH
Q 042427 25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQ 55 (229)
Q Consensus 25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~ 55 (229)
..+++-|-.||-+-||.|+.+.- .|..+.+
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~p-~l~~l~~ 47 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMAP-DVAKLKQ 47 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhHH-HHHHHHH
Confidence 45677777888999999998742 3444443
No 83
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=25.36 E-value=1.6e+02 Score=22.23 Aligned_cols=30 Identities=23% Similarity=0.567 Sum_probs=21.3
Q ss_pred CCceEEEEEEEeCChhhHHHHHHhHHHHHHh
Q 042427 26 SENVTVSVYYETLCPYCADFIVNHLVKLFQK 56 (229)
Q Consensus 26 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~ 56 (229)
.+|+-|-.+|-+-||.|++.+ ..|..++++
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~-p~l~~~~~~ 46 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFT-PKLVEFYEK 46 (131)
T ss_pred CCcEEEEEEECCCChHHHHHh-HHHHHHHHH
Confidence 356667777789999999875 356555553
No 84
>PLN03030 cationic peroxidase; Provisional
Probab=25.24 E-value=75 Score=29.44 Aligned_cols=32 Identities=22% Similarity=0.486 Sum_probs=25.3
Q ss_pred CCCCceEEEEEEEeCChhhHHHHHHhHHHHHHh
Q 042427 24 GSSENVTVSVYYETLCPYCADFIVNHLVKLFQK 56 (229)
Q Consensus 24 ~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~ 56 (229)
.....+.+. ||..-||+-..-|.+.+...+.+
T Consensus 20 ~~~~~L~~~-fY~~sCP~aE~iV~~~v~~~~~~ 51 (324)
T PLN03030 20 VQGQGTRVG-FYSTTCPQAESIVRKTVQSHFQS 51 (324)
T ss_pred chhccCccc-hhhCcCCCHHHHHHHHHHHHHhh
Confidence 344557777 67788999999999999988864
No 85
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=24.24 E-value=1.7e+02 Score=21.04 Aligned_cols=30 Identities=17% Similarity=0.405 Sum_probs=20.8
Q ss_pred CCCceEEEEEEEeCChhhHHHHHHhHHHHHH
Q 042427 25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQ 55 (229)
Q Consensus 25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~ 55 (229)
..++.-|-.||-+-||.|+++.. .+..+.+
T Consensus 16 ~~~~~~lv~f~a~wC~~C~~~~~-~~~~~a~ 45 (109)
T cd03002 16 NTNYTTLVEFYAPWCGHCKNLKP-EYAKAAK 45 (109)
T ss_pred cCCCeEEEEEECCCCHHHHhhCh-HHHHHHH
Confidence 45666788888899999998742 3444433
No 86
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=24.23 E-value=42 Score=23.04 Aligned_cols=11 Identities=36% Similarity=0.625 Sum_probs=6.4
Q ss_pred eeeeEEEECCe
Q 042427 168 RFVPWVVVNNQ 178 (229)
Q Consensus 168 ~~VPwI~iNG~ 178 (229)
..||.|++||.
T Consensus 47 ~~vP~v~~~g~ 57 (72)
T TIGR02194 47 RQVPVIVADGD 57 (72)
T ss_pred cccCEEEECCC
Confidence 45666666554
No 87
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=23.58 E-value=91 Score=23.12 Aligned_cols=47 Identities=6% Similarity=0.060 Sum_probs=28.4
Q ss_pred HHHHHhhcCCCCCccccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCeech
Q 042427 127 WINCFELTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQ 181 (229)
Q Consensus 127 ~~~Ca~~~gl~~~~I~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~ 181 (229)
+++-++..|++...+.=.+. .++.....+.|. ...||.|.|||++++
T Consensus 33 ak~lL~~~~i~~~~~di~~~---~~~~~~l~~~tg-----~~tvP~vfi~g~~iG 79 (97)
T TIGR00365 33 AVQILKACGVPFAYVNVLED---PEIRQGIKEYSN-----WPTIPQLYVKGEFVG 79 (97)
T ss_pred HHHHHHHcCCCEEEEECCCC---HHHHHHHHHHhC-----CCCCCEEEECCEEEe
Confidence 34456667887665522222 344444444443 359999999999874
No 88
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=23.03 E-value=1.1e+02 Score=22.08 Aligned_cols=22 Identities=9% Similarity=0.087 Sum_probs=17.1
Q ss_pred CCceEEEEEEEeCChhhHHHHH
Q 042427 26 SENVTVSVYYETLCPYCADFIV 47 (229)
Q Consensus 26 ~~kV~V~vyyESlCPds~~Fi~ 47 (229)
.+++-|-.||-.-||.|+.+..
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~ 31 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEK 31 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHH
Confidence 4466666888899999999853
No 89
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=22.00 E-value=59 Score=22.24 Aligned_cols=15 Identities=27% Similarity=1.008 Sum_probs=7.2
Q ss_pred EEEEEEeCChhhHHH
Q 042427 31 VSVYYETLCPYCADF 45 (229)
Q Consensus 31 V~vyyESlCPds~~F 45 (229)
++||+-..||.|++-
T Consensus 2 i~Ly~~~~~p~c~kv 16 (77)
T cd03040 2 ITLYQYKTCPFCCKV 16 (77)
T ss_pred EEEEEcCCCHHHHHH
Confidence 344554555555443
No 90
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.90 E-value=65 Score=23.83 Aligned_cols=16 Identities=31% Similarity=0.752 Sum_probs=14.0
Q ss_pred EEEEEeCChhhHHHHH
Q 042427 32 SVYYETLCPYCADFIV 47 (229)
Q Consensus 32 ~vyyESlCPds~~Fi~ 47 (229)
.+|+--+||||.-|+.
T Consensus 5 ~lfgsn~Cpdca~a~e 20 (85)
T COG4545 5 KLFGSNLCPDCAPAVE 20 (85)
T ss_pred eeeccccCcchHHHHH
Confidence 6899999999999864
No 91
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=21.74 E-value=1.7e+02 Score=20.53 Aligned_cols=22 Identities=14% Similarity=0.508 Sum_probs=17.7
Q ss_pred CCCceEEEEEEEeCChhhHHHH
Q 042427 25 SSENVTVSVYYETLCPYCADFI 46 (229)
Q Consensus 25 ~~~kV~V~vyyESlCPds~~Fi 46 (229)
+.++.-|-.||-+-||.|+++.
T Consensus 16 ~~~~~~~v~f~a~~C~~C~~~~ 37 (105)
T cd02998 16 DDKKDVLVEFYAPWCGHCKNLA 37 (105)
T ss_pred CCCCcEEEEEECCCCHHHHhhC
Confidence 3455678888999999999883
No 92
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=21.27 E-value=2e+02 Score=21.66 Aligned_cols=18 Identities=28% Similarity=0.595 Sum_probs=13.2
Q ss_pred ceEEEEE-EEeCChhhHHH
Q 042427 28 NVTVSVY-YETLCPYCADF 45 (229)
Q Consensus 28 kV~V~vy-yESlCPds~~F 45 (229)
++.|-|+ +-+-||.|+.+
T Consensus 22 ~~~vvv~f~a~wC~~C~~~ 40 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVT 40 (113)
T ss_pred CeEEEEEeCCCCCCChHHH
Confidence 5556666 56799999865
No 93
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=20.68 E-value=3.2e+02 Score=19.78 Aligned_cols=21 Identities=14% Similarity=0.447 Sum_probs=16.9
Q ss_pred CCceEEEEEEEeCChhhHHHH
Q 042427 26 SENVTVSVYYETLCPYCADFI 46 (229)
Q Consensus 26 ~~kV~V~vyyESlCPds~~Fi 46 (229)
..+.-+-.||-+-||.|+++.
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~ 37 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLH 37 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhH
Confidence 345667888999999999874
No 94
>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Members of this strictly eukaryotic protein family are not RNA 3'-phosphate cyclase (6.5.1.4), but rather a homolog with a distinct function, found in the nucleolus and required for ribosomal RNA processing. Homo sapiens has both a member of this RCL (RNA terminal phosphate cyclase like) family and EC 6.5.1.4, while Saccharomyces has a member of this family only.
Probab=20.40 E-value=4.9e+02 Score=24.29 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=37.3
Q ss_pred CCCceEEEEEEEeCCh--hhHHHHHHhHHHHHHhcCCC---ceeEEEEEeeec
Q 042427 25 SSENVTVSVYYETLCP--YCADFIVNHLVKLFQKGLNS---IVNLRMIPWGNS 72 (229)
Q Consensus 25 ~~~kV~V~vyyESlCP--ds~~Fi~~qL~p~~~~~l~~---~vdl~lvP~G~a 72 (229)
.+.++.|++-.-+--| -+.+|+.+.+.|++++ +.- .+++++.=.|..
T Consensus 102 ~~~~~~l~l~GgT~v~~sPsvDy~~~v~lp~l~~-~G~~~~~~~l~l~~RG~y 153 (360)
T TIGR03400 102 SKKPLSITLKGITNSTGDPSVDTIRTATLPLLKK-FGIPDEGLELKILKRGAA 153 (360)
T ss_pred CCCCeEEEEEeecCCCCCCCHHHHHHHHHHHHHH-cCCCCCceEEEEEecccc
Confidence 4668889998888766 4899999999999985 554 689988766653
No 95
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=20.26 E-value=89 Score=20.91 Aligned_cols=26 Identities=19% Similarity=0.489 Sum_probs=19.5
Q ss_pred CCCeeeeEEEECCeechhhhhhHHHH
Q 042427 165 PPHRFVPWVVVNNQPLQEDFMNFANH 190 (229)
Q Consensus 165 P~~~~VPwI~iNG~~~~~~~~nl~~~ 190 (229)
|.+.|--||.++|+++.+..+.-++.
T Consensus 16 ~kvdWd~wvSf~GrPltdevK~a~k~ 41 (49)
T PF06543_consen 16 PKVDWDKWVSFDGRPLTDEVKEAMKL 41 (49)
T ss_pred cccchHHheeeCCeeCCHHHHHHHHH
Confidence 56789999999999997655444443
No 96
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=20.21 E-value=1.9e+02 Score=24.32 Aligned_cols=21 Identities=33% Similarity=0.751 Sum_probs=18.3
Q ss_pred CCCceEEEEEEEeCChhhHHH
Q 042427 25 SSENVTVSVYYETLCPYCADF 45 (229)
Q Consensus 25 ~~~kV~V~vyyESlCPds~~F 45 (229)
...+|.|.+|+-+-||+|...
T Consensus 131 ~~~pv~I~~F~a~~C~~C~~~ 151 (215)
T TIGR02187 131 LDEPVRIEVFVTPTCPYCPYA 151 (215)
T ss_pred cCCCcEEEEEECCCCCCcHHH
Confidence 367889999999999999965
No 97
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=20.09 E-value=3.1e+02 Score=19.54 Aligned_cols=22 Identities=14% Similarity=0.460 Sum_probs=17.2
Q ss_pred CCCceEEEEEEEeCChhhHHHH
Q 042427 25 SSENVTVSVYYETLCPYCADFI 46 (229)
Q Consensus 25 ~~~kV~V~vyyESlCPds~~Fi 46 (229)
..+++-|-.||-+-||.|+++.
T Consensus 17 ~~~~~v~v~f~a~wC~~C~~~~ 38 (104)
T cd03004 17 NRKEPWLVDFYAPWCGPCQALL 38 (104)
T ss_pred cCCCeEEEEEECCCCHHHHHHH
Confidence 3445677788899999999873
Done!