BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042428
(106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PJ0|A Chain A, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH
FERROUS IONS At Neutral Ph
pdb|1PJ0|B Chain B, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH
FERROUS IONS At Neutral Ph
pdb|1PJ1|A Chain A, Ribonucleotide Reductase R2-D84eW48F SOAKED WITH FERROUS
Ions At Ph 5
pdb|1PJ1|B Chain B, Ribonucleotide Reductase R2-D84eW48F SOAKED WITH FERROUS
Ions At Ph 5
Length = 375
Score = 29.3 bits (64), Expect = 0.63, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 57 SVPPPGVDVWLPSDSLGTAFPQVDIEDAGLSTSESDHEDDSLSIFPL 103
S P P ++ WL SD++ A +V++ + +S+ + D LS F L
Sbjct: 329 SNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL 375
>pdb|1BIQ|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant
E238a
pdb|1RSV|A Chain A, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of
Ribonucleotide Reductase
pdb|1RSV|B Chain B, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of
Ribonucleotide Reductase
Length = 375
Score = 29.3 bits (64), Expect = 0.63, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 57 SVPPPGVDVWLPSDSLGTAFPQVDIEDAGLSTSESDHEDDSLSIFPL 103
S P P ++ WL SD++ A +V++ + +S+ + D LS F L
Sbjct: 329 SNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL 375
>pdb|1RNR|A Chain A, Autocatalytic Generation Of Dopa In The Engineered Protein
R2 F208y From Escherichia Coli Ribonucleotide Reductase
And Crystal Structure Of The Dopa-208 Protein
pdb|1RNR|B Chain B, Autocatalytic Generation Of Dopa In The Engineered Protein
R2 F208y From Escherichia Coli Ribonucleotide Reductase
And Crystal Structure Of The Dopa-208 Protein
Length = 375
Score = 29.3 bits (64), Expect = 0.63, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 57 SVPPPGVDVWLPSDSLGTAFPQVDIEDAGLSTSESDHEDDSLSIFPL 103
S P P ++ WL SD++ A +V++ + +S+ + D LS F L
Sbjct: 329 SNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL 375
>pdb|1MRR|A Chain A, Substitution Of Manganese For Iron In Ribonucleotide
Reductase From Escherichia Coli. Spectroscopic And
Crystallographic Characterization
pdb|1MRR|B Chain B, Substitution Of Manganese For Iron In Ribonucleotide
Reductase From Escherichia Coli. Spectroscopic And
Crystallographic Characterization
pdb|1RIB|A Chain A, Structure And Function Of The Escherichia Coli
Ribonucleotide Reductase Protein R2
pdb|1RIB|B Chain B, Structure And Function Of The Escherichia Coli
Ribonucleotide Reductase Protein R2
Length = 375
Score = 29.3 bits (64), Expect = 0.63, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 57 SVPPPGVDVWLPSDSLGTAFPQVDIEDAGLSTSESDHEDDSLSIFPL 103
S P P ++ WL SD++ A +V++ + +S+ + D LS F L
Sbjct: 329 SNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL 375
>pdb|1XIK|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
pdb|1XIK|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
pdb|1JPR|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Nitric Oxide
pdb|1JPR|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Nitric Oxide
pdb|1JQC|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Hydrogen Peroxide And Hydroxylamine
pdb|1JQC|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Hydrogen Peroxide And Hydroxylamine
pdb|1MXR|A Chain A, High Resolution Structure Of Ribonucleotide Reductase R2
From E. Coli In Its Oxidised (met) Form
pdb|1MXR|B Chain B, High Resolution Structure Of Ribonucleotide Reductase R2
From E. Coli In Its Oxidised (met) Form
pdb|3UUS|E Chain E, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|F Chain F, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|G Chain G, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|H Chain H, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|4ERM|E Chain E, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|F Chain F, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|G Chain G, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|H Chain H, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERP|E Chain E, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|F Chain F, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|G Chain G, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|H Chain H, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
Length = 375
Score = 29.3 bits (64), Expect = 0.63, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 57 SVPPPGVDVWLPSDSLGTAFPQVDIEDAGLSTSESDHEDDSLSIFPL 103
S P P ++ WL SD++ A +V++ + +S+ + D LS F L
Sbjct: 329 SNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL 375
>pdb|1PIY|A Chain A, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At
Neutral Ph
pdb|1PIY|B Chain B, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At
Neutral Ph
pdb|1R65|A Chain A, Crystal Structure Of Ferrous Soaked Ribonucleotide
Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli
pdb|1R65|B Chain B, Crystal Structure Of Ferrous Soaked Ribonucleotide
Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli
Length = 375
Score = 29.3 bits (64), Expect = 0.64, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 57 SVPPPGVDVWLPSDSLGTAFPQVDIEDAGLSTSESDHEDDSLSIFPL 103
S P P ++ WL SD++ A +V++ + +S+ + D LS F L
Sbjct: 329 SNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL 375
>pdb|1PIM|A Chain A, Dithionite Reduced E. Coli Ribonucleotide Reductase R2
Subunit, D84e Mutant
pdb|1PIM|B Chain B, Dithionite Reduced E. Coli Ribonucleotide Reductase R2
Subunit, D84e Mutant
pdb|1PIU|A Chain A, Oxidized Ribonucleotide Reductase R2-d84e Mutant
Containing Oxo-bridged Diferric Cluster
pdb|1PIU|B Chain B, Oxidized Ribonucleotide Reductase R2-d84e Mutant
Containing Oxo-bridged Diferric Cluster
pdb|1PIZ|A Chain A, Ribonucleotide Reductase R2 D84e Mutant Soaked With
Ferrous Ions At Neutral Ph
pdb|1PIZ|B Chain B, Ribonucleotide Reductase R2 D84e Mutant Soaked With
Ferrous Ions At Neutral Ph
Length = 375
Score = 29.3 bits (64), Expect = 0.64, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 57 SVPPPGVDVWLPSDSLGTAFPQVDIEDAGLSTSESDHEDDSLSIFPL 103
S P P ++ WL SD++ A +V++ + +S+ + D LS F L
Sbjct: 329 SNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL 375
>pdb|1YFD|A Chain A, Crystal Structure Of The Y122h Mutant Of Ribonucleotide
Reductase R2 Protein From E. Coli
pdb|1YFD|B Chain B, Crystal Structure Of The Y122h Mutant Of Ribonucleotide
Reductase R2 Protein From E. Coli
Length = 375
Score = 29.3 bits (64), Expect = 0.65, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 57 SVPPPGVDVWLPSDSLGTAFPQVDIEDAGLSTSESDHEDDSLSIFPL 103
S P P ++ WL SD++ A +V++ + +S+ + D LS F L
Sbjct: 329 SNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL 375
>pdb|1RSR|A Chain A, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of
Ribonucleotide Reductase
pdb|1RSR|B Chain B, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of
Ribonucleotide Reductase
Length = 375
Score = 29.3 bits (64), Expect = 0.65, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 57 SVPPPGVDVWLPSDSLGTAFPQVDIEDAGLSTSESDHEDDSLSIFPL 103
S P P ++ WL SD++ A +V++ + +S+ + D LS F L
Sbjct: 329 SNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL 375
>pdb|2XOF|A Chain A, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of
E. Coli
pdb|2XOF|B Chain B, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of
E. Coli
Length = 375
Score = 29.3 bits (64), Expect = 0.65, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 57 SVPPPGVDVWLPSDSLGTAFPQVDIEDAGLSTSESDHEDDSLSIFPL 103
S P P ++ WL SD++ A +V++ + +S+ + D LS F L
Sbjct: 329 SNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL 375
>pdb|1BIQ|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant
E238a
Length = 375
Score = 28.9 bits (63), Expect = 0.66, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 57 SVPPPGVDVWLPSDSLGTAFPQVDIEDAGLSTSESDHEDDSLSIFPL 103
S P P ++ WL SD++ A +V++ + +S+ + D LS F L
Sbjct: 329 SNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL 375
>pdb|3H0L|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 45 QINEFAEEIARLSVPPPGVDVWLPSDSLGTAFPQVDIEDAGLSTSESDHEDDSLS 99
++ +F EE R P G+ WL +D LG + D G+S ES + + L+
Sbjct: 325 EVGDFFEEAVRHFKEPKGIVNWLINDLLGL------LRDKGISIEESPVKPEHLA 373
>pdb|2BW0|A Chain A, Crystal Structure Of The Hydrolase Domain Of Human 10-
Formyltetrahydrofolate 2 Dehydrogenase
pdb|2CFI|A Chain A, The Hydrolase Domain Of Human 10-Fthfd In Complex With
6- Formyltetrahydropterin
Length = 329
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 25 HMHWKKHEIVKVFCKPSKPGQINEFAEEIARLSVPPPGVDVWLPSDSLGTAFPQV 79
H+ + HE+V VF P K G+ + E + VP W + G A P V
Sbjct: 40 HLRKEGHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRW---RAKGQALPDV 91
>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
Length = 504
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 57 SVPPPGVDVWLPSDSLGTAFPQVDIEDAGLST 88
S+P G+D W SDS + F Q+ AGL T
Sbjct: 337 SIPALGIDAWDNSDS--SVFAQIAPMPAGLET 366
>pdb|3B6D|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant (1.2a)
Length = 504
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 57 SVPPPGVDVWLPSDSLGTAFPQVDIEDAGLST 88
S+P G+D W SDS + F Q+ AGL T
Sbjct: 337 SIPALGIDAWDNSDS--SVFAQIAPMPAGLET 366
>pdb|3B3R|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant Bound To Glycerol (0.98a)
Length = 506
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 57 SVPPPGVDVWLPSDSLGTAFPQVDIEDAGLST 88
S+P G+D W SDS + F Q+ AGL T
Sbjct: 339 SIPALGIDAWDNSDS--SVFAQIAPMPAGLET 368
>pdb|3UPT|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
pdb|3UPT|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
Length = 711
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 44 GQINEFAEEIARLSVPPPGVDVWLPSDSLGTA 75
G ++ E +A L + P +DVW P+D++ TA
Sbjct: 516 GPTHQSVEHVASLRLIP-NLDVWRPADTVETA 546
>pdb|3UK1|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
pdb|3UK1|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
Length = 711
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 44 GQINEFAEEIARLSVPPPGVDVWLPSDSLGTA 75
G ++ E +A L + P +DVW P+D++ TA
Sbjct: 516 GPTHQSVEHVASLRLIP-NLDVWRPADTVETA 546
>pdb|3BXW|B Chain B, Crystal Structure Of Stabilin-1 Interacting
Chitinase-Like Protein, Si-Clp
pdb|3BXW|A Chain A, Crystal Structure Of Stabilin-1 Interacting
Chitinase-Like Protein, Si-Clp
Length = 393
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 3 QKRSSCLPSGRRRVFGGVILNMHMHWKKH--EIVKVF 37
+ RS C R R F G +L W H ++ KVF
Sbjct: 63 EHRSYCSAKARDRHFAGDVLGYVTPWNSHGYDVTKVF 99
>pdb|1VTM|P Chain P, Structure Of The U2 Strain Of Tobacco Mosaic Virus
Refined At 3.5 Angstroms Resolution Using X-Ray Fiber
Diffraction
Length = 158
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 47 NEFAEEIARLSVPPPGVDVWLPSDSLGTAFPQVDI 81
N+F + AR +V D W PS + FP D
Sbjct: 33 NQFQTQQARTTVQQQFADAWKPSPVMTVRFPASDF 67
>pdb|3J0F|I Chain I, Sindbis Virion
pdb|3J0F|J Chain J, Sindbis Virion
pdb|3J0F|K Chain K, Sindbis Virion
pdb|3J0F|L Chain L, Sindbis Virion
Length = 423
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 28 WKKHEIVKVFCKPSKPGQINEFAEEIAR 55
W HE V+V+ + S PG + + EI +
Sbjct: 330 WGNHEPVRVYAQESAPGDPHGWPHEIVQ 357
>pdb|3KOW|E Chain E, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOW|F Chain F, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOW|G Chain G, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOW|H Chain H, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOX|E Chain E, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOX|F Chain F, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOX|G Chain G, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOX|H Chain H, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOY|E Chain E, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOY|F Chain F, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOY|G Chain G, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOY|H Chain H, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOZ|E Chain E, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KOZ|F Chain F, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KOZ|G Chain G, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KOZ|H Chain H, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KP0|E Chain E, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP0|F Chain F, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP0|G Chain G, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP0|H Chain H, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP1|E Chain E, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
pdb|3KP1|F Chain F, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
pdb|3KP1|H Chain H, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
pdb|3KP1|G Chain G, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
Length = 121
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 77 PQVDIEDAGLSTSESDHEDDSLSIFP 102
+ + +AGL+ SE + DD++ IF
Sbjct: 92 KNISVREAGLALSEGKYWDDAIQIFK 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,376,807
Number of Sequences: 62578
Number of extensions: 125523
Number of successful extensions: 322
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 307
Number of HSP's gapped (non-prelim): 22
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)