BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042428
(106 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440,
chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2
SV=1
Length = 444
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 39/57 (68%)
Query: 1 MAQKRSSCLPSGRRRVFGGVILNMHMHWKKHEIVKVFCKPSKPGQINEFAEEIARLS 57
M K + +P GRR ++ GVILNMH+HWKKH+ ++V K P ++ E A E+ARL+
Sbjct: 188 MGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLT 244
>sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Oryza sativa subsp. japonica
GN=Os08g0360100 PE=2 SV=1
Length = 725
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 12 GRRRVFGGVILNMHMHWKKHEIVKVFCKPSKPGQI 46
GRR VF GVI +H HWK E+VKV K ++ QI
Sbjct: 588 GRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQI 622
>sp|Q9FYT6|CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1
Length = 715
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 12 GRRRVFGGVILNMHMHWKKHEIVKVFCKPSKPGQI 46
GRR +F GVI +H HWK E+VKV K ++ QI
Sbjct: 586 GRRGIFDGVIEEIHQHWKHKEVVKVITKQNQTRQI 620
>sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=2
SV=2
Length = 720
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 4 KRSSCLPSGRRRVFGGVILNMHMHWKKHEIVKV 36
K +S L GRR VF GV+ +H HWK E+ KV
Sbjct: 586 KMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKV 618
>sp|Q07356|PDS_ARATH 15-cis-phytoene desaturase, chloroplastic/chromoplastic
OS=Arabidopsis thaliana GN=PDS PE=1 SV=1
Length = 566
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 14 RRVFGGVILNMHMHWKKHEIVKVFCKPSKPGQINEF 49
+ +FG + +N + WK+H ++ F PSKPG+ + F
Sbjct: 157 QNLFGELGINDRLQWKEHSMI--FAMPSKPGEFSRF 190
>sp|P28554|CRTI_SOLLC Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Solanum
lycopersicum GN=PDS PE=2 SV=1
Length = 583
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 14 RRVFGGVILNMHMHWKKHEIVKVFCKPSKPGQINEF 49
+ +FG + +N + WK+H ++ F PSKPG+ + F
Sbjct: 176 QNLFGELGINDRLQWKEHSMI--FAMPSKPGEFSRF 209
>sp|P28553|CRTI_SOYBN Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Glycine max
GN=PDS1 PE=2 SV=1
Length = 570
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 14 RRVFGGVILNMHMHWKKHEIVKVFCKPSKPGQINEF 49
+ +FG + +N + WK+H + +F P+KPG+ + F
Sbjct: 163 QNLFGELGINDRLQWKEHSM--IFAMPNKPGEFSRF 196
>sp|P80093|PDS_CAPAN 15-cis-phytoene desaturase, chloroplastic/chromoplastic OS=Capsicum
annuum GN=PDS PE=1 SV=1
Length = 582
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 14 RRVFGGVILNMHMHWKKHEIVKVFCKPSKPGQINEF 49
+ +FG + +N + WK+H + +F P+KPG+ + F
Sbjct: 175 QNLFGELGINDRLQWKEHSM--IFAMPNKPGEFSRF 208
>sp|Q0DUI8|CRTI_ORYSJ Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa
subsp. japonica GN=PDS PE=2 SV=2
Length = 578
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 14 RRVFGGVILNMHMHWKKHEIVKVFCKPSKPGQINEF 49
+ +FG + +N + WK+H + +F P+KPG+ + F
Sbjct: 169 QNLFGELGINDRLQWKEHSM--IFAMPNKPGEFSRF 202
>sp|A2XDA1|CRTI_ORYSI Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa
subsp. indica GN=PDS1 PE=2 SV=2
Length = 578
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 14 RRVFGGVILNMHMHWKKHEIVKVFCKPSKPGQINEF 49
+ +FG + +N + WK+H + +F P+KPG+ + F
Sbjct: 169 QNLFGELGINDRLQWKEHSM--IFAMPNKPGEFSRF 202
>sp|Q40406|CRTI_NARPS Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Narcissus
pseudonarcissus GN=PDS1 PE=1 SV=1
Length = 570
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 14 RRVFGGVILNMHMHWKKHEIVKVFCKPSKPGQINEF 49
+ +FG + +N + WK+H + +F P+KPG+ + F
Sbjct: 162 QNLFGELGINDRLQWKEHSM--IFAMPNKPGEFSRF 195
>sp|Q8PM62|RNT_XANAC Ribonuclease T OS=Xanthomonas axonopodis pv. citri (strain 306)
GN=rnt PE=3 SV=1
Length = 213
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 2 AQKRSSCLPSGRR-RVFGGVILNMH---MHWKKHEIVKVFCKPSKPGQINEF--AEEIAR 55
AQ S LP RR R + V++++ W KH ++++ C P + G F E +
Sbjct: 9 AQPAPSFLPMSRRFRGYLPVVVDVETGGFDWNKHALLEIACVPIEMGADGRFFPGETASA 68
Query: 56 LSVPPPGVDV 65
VP PG+++
Sbjct: 69 HLVPAPGLEI 78
>sp|Q9XV66|UNC80_CAEEL Protein unc-80 OS=Caenorhabditis elegans GN=unc-80 PE=2 SV=4
Length = 3263
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 54 ARLSVPPPGVDVWLPSDSLG-TAFPQVD 80
A VPPPG+D LPS ++G + P VD
Sbjct: 1836 ASFKVPPPGIDFTLPSPAIGQSQLPVVD 1863
>sp|P49086|CRTI_MAIZE Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Zea mays
GN=PDS1 PE=2 SV=1
Length = 571
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 14 RRVFGGVILNMHMHWKKHEIVKVFCKPSKPGQINEF 49
+ +FG + + + WK+H ++ F P+KPG+ + F
Sbjct: 161 QNLFGELRIEDRLQWKEHSMI--FAMPNKPGEFSRF 194
>sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0495900 PE=2 SV=1
Length = 701
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 12 GRRRVFGGVILNMHMHWKKHEIVKVFCK 39
GR + ++ N+H HWK+ + K+ CK
Sbjct: 207 GRDGLTHNMLENIHSHWKRKRVCKIKCK 234
>sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1
SV=1
Length = 674
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 9 LPSGRRRVFGGVILNMHMHWKKHEIVKVFCK 39
L GR + ++ N+H HWK+ + K+ CK
Sbjct: 204 LNMGRDGLTHNMLENIHSHWKRKRVCKIKCK 234
>sp|Q9LXA8|BXL6_ARATH Probable beta-D-xylosidase 6 OS=Arabidopsis thaliana GN=BXL6 PE=2
SV=1
Length = 792
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 16/83 (19%)
Query: 22 LNMHMHWKKHEIVKVFCKPSKPGQINEFAEEIARLSVPP---------------PGVDVW 66
+++ + + +V + P K GQ++ A + RL +PP PGV +
Sbjct: 45 VSLSIKQRAISLVSLLMLPEKIGQLSNTAASVPRLGIPPYEWWSESLHGLADNGPGVS-F 103
Query: 67 LPSDSLGTAFPQVDIEDAGLSTS 89
S S T+FPQV + A + +
Sbjct: 104 NGSISAATSFPQVIVSAASFNRT 126
>sp|P37427|RIR2_SALTY Ribonucleoside-diphosphate reductase 1 subunit beta OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=nrdB PE=3 SV=3
Length = 376
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 57 SVPPPGVDVWLPSDSLGTAFPQVDIEDAGLSTSESDHEDDSLSIFPL 103
S P P ++ WL SD++ A +V++ + +S+ + D LS F L
Sbjct: 330 SNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL 376
>sp|P69924|RIR2_ECOLI Ribonucleoside-diphosphate reductase 1 subunit beta OS=Escherichia
coli (strain K12) GN=nrdB PE=1 SV=2
Length = 376
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 57 SVPPPGVDVWLPSDSLGTAFPQVDIEDAGLSTSESDHEDDSLSIFPL 103
S P P ++ WL SD++ A +V++ + +S+ + D LS F L
Sbjct: 330 SNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL 376
>sp|P69925|RIR2_ECO57 Ribonucleoside-diphosphate reductase 1 subunit beta OS=Escherichia
coli O157:H7 GN=nrdB PE=3 SV=2
Length = 376
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 57 SVPPPGVDVWLPSDSLGTAFPQVDIEDAGLSTSESDHEDDSLSIFPL 103
S P P ++ WL SD++ A +V++ + +S+ + D LS F L
Sbjct: 330 SNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL 376
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,896,494
Number of Sequences: 539616
Number of extensions: 1677458
Number of successful extensions: 3670
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3650
Number of HSP's gapped (non-prelim): 27
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)